BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036198
         (499 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/477 (74%), Positives = 403/477 (84%), Gaps = 25/477 (5%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           VSD  KLY+AI +N+N   +MEKALD +GV LTTD V+ +L +  FEEK+AFRFFMWAGH
Sbjct: 233 VSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGH 292

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           QD Y+HEP AYN MIDILSSTKYK KQFR+VC MLDYMKRN+K  VPV+VLLMIL++YTE
Sbjct: 293 QDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE 352

Query: 168 K-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           K             I+VKTQPEINALNLLLDALCKC LV+ A+ + +RVKNKVKP+ANTY
Sbjct: 353 KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTY 412

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           NIL            GM+ LEEMI+MGH PD+FTYNTAID+FCKA MVTEA +LFEFMRT
Sbjct: 413 NILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRT 472

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           KGST+SSPTAKTYAIMI+ALVQ+DR EECF L+  MINSG LPDVSTYK+V+EGMCLAGK
Sbjct: 473 KGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGK 532

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           VEEAYKFLEEMGNKGY PDIVTYNCFL VLC+NK  +EAL LYGRMIE GC PSV T+NM
Sbjct: 533 VEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNM 592

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LISM+FE+GEPDGAFETWHEMDKRGCA+D DTYCVMI+GLF+C+K+E+ACFLL+EVVNKG
Sbjct: 593 LISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKG 652

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           +KLPYRKFD +LMQLS+IGDL AIHKLS+HMRKFYNP +ARR ALNQKR  +SLR K
Sbjct: 653 IKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLRGK 709


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/475 (73%), Positives = 402/475 (84%), Gaps = 25/475 (5%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           VSD  KLY+AI +N+N   +MEKALD +GV LTTD V+ +L +  FEEK+AFRFFMWAGH
Sbjct: 206 VSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGH 265

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           QD Y+HEP AYN MIDILSSTKYK KQFR+VC MLDYMKRN+K  VPV+VLLMIL++YTE
Sbjct: 266 QDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE 325

Query: 168 K-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           K             I+VKTQPEINALNLLLDALCKC LV+ A+ + +RVKNKVKP+ANTY
Sbjct: 326 KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTY 385

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           NIL            GM+ LEEMI+MGH PD+FTYNTAID+FCKA MVTEA +LFEFMRT
Sbjct: 386 NILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRT 445

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           KGST+SSPTAKTYAIMI+ALVQ+DR EECF L+  MINSG LPDVSTYK+V+EGMCLAGK
Sbjct: 446 KGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGK 505

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           VEEAYKFLEEMGNKGY PDIVTYNCFL VLC+NK  +EAL LYGRMIE GC PSV T+NM
Sbjct: 506 VEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNM 565

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LISM+FE+GEPDGAFETWHEMDKRGCA+D DTYCVMI+GLF+C+K+E+ACFLL+EV+NKG
Sbjct: 566 LISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKG 625

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLR 497
           +KLPYRKFD +LMQLS+IGDL AIHKLS+HMRKFYNP +ARR ALNQKR  +SLR
Sbjct: 626 IKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLR 680


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/458 (71%), Positives = 386/458 (84%), Gaps = 25/458 (5%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           N+EK LD LG+ LTTD V+ VL R  FEEK +FRFFMWAGHQ NY+HEP AYN MIDIL+
Sbjct: 15  NLEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILT 74

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-------------IKVKT 173
           STKYKA+QFR+VC MLDYMKRNNK  VPV+VLL IL+ YTEK             I+VKT
Sbjct: 75  STKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNYTEKYLTRVQKFAKKKRIRVKT 134

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           QPEINA NLLLDALCKC L + AE + KRVKNKVKP+ANTYN++            GM+ 
Sbjct: 135 QPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGMKV 194

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEMIQ+GH PD+FTY TAID FC+A MV EAA+LFEFMRTKGST+SSPTAKTYAIMI A
Sbjct: 195 LEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGA 254

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+N+RM+ECF LL  MINSGCLPDVST+KE++EGMC AGK++EAY+FL+EMGNKGYPPD
Sbjct: 255 LVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPD 314

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTYNCFLKVLC+NKN +EALRLY RMIE GC+PSVQT+NMLISM+FE+G+PDGAFETW+
Sbjct: 315 IVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETWY 374

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EMDKRGCAQDVDTY VMIDGLF C+KVE+ACFL+E++VNKG+KLPY+KFDS+LMQLSVIG
Sbjct: 375 EMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLSVIG 434

Query: 462 DLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           ++ AIH+LS+HMR F+NP +ARR  LNQKR  +S+R +
Sbjct: 435 NIRAIHRLSEHMRTFHNPSMARRYVLNQKRKSMSVRGR 472


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/466 (69%), Positives = 388/466 (83%), Gaps = 25/466 (5%)

Query: 59  IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAY 118
           +DN   ++NMEKAL  LG+PL+T  V GVL R +++EKIA RFF WAGHQ++Y+HEP AY
Sbjct: 1   MDNLAEFNNMEKALGQLGIPLSTPLVTGVLHRLRYDEKIALRFFTWAGHQEDYSHEPCAY 60

Query: 119 NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK---------- 168
           N M+DILSST+YK KQFR+VC +L+YMKRNNK  VPV+VLL+IL++YTEK          
Sbjct: 61  NDMMDILSSTRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKYTEKYLTHVQKFAR 120

Query: 169 ---IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
              I+VKTQPEINA NLLLDALCKC LV+ AET+ K+++  VKPNA TYNI         
Sbjct: 121 KRRIRVKTQPEINAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVR 180

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               GM+ LEEM+++GH PDNF YNTAIDT+CKA MVTEA DLFEFMRTKGS+ISSPTAK
Sbjct: 181 NPTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAK 240

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TYAI+IVAL Q+DRMEECF L+GHMI+SGCLPDV+TYKE++EGMC+ GK++EAYKFLEEM
Sbjct: 241 TYAIIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEM 300

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
           GNK Y PDIVTYNCFLKVLCDNK  ++AL+LYGRMIE+ C PSVQTYNMLISM+FE+ +P
Sbjct: 301 GNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDP 360

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           DGAFETW EMD RGC  D+DTY VMIDGLF+C+KVE+ACFLLEEV+NKG+KLPY+KFDS+
Sbjct: 361 DGAFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGIKLPYKKFDSF 420

Query: 454 LMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           LMQLSVIGDL AIH++S+HMRKFYN  +ARR AL+QKR  +SLR K
Sbjct: 421 LMQLSVIGDLQAIHRVSEHMRKFYNHGMARRYALSQKRKSMSLRGK 466


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/466 (68%), Positives = 385/466 (82%), Gaps = 25/466 (5%)

Query: 59  IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAY 118
           +DN   ++NME AL  LG+PL+T  V G L R +++EKIA RFF WAGHQ++Y+HEP AY
Sbjct: 1   MDNLAGFNNMENALGQLGIPLSTPLVTGGLHRLRYDEKIALRFFTWAGHQEDYSHEPCAY 60

Query: 119 NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK---------- 168
           N M+DILSST+YK KQFR+VC +L+YMKRNN+  VP +VLL+IL++YTEK          
Sbjct: 61  NDMMDILSSTRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKYTEKYLTHMQKFAK 120

Query: 169 ---IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
              I+VKTQ EINA NLLLDALCKC LV+ AE++ K+++  VKPNA TYNIL        
Sbjct: 121 KKRIRVKTQLEINAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVR 180

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               GM+ LEEMI++GH PDNFTYNTAIDT+CK  M+TEA DLFEFMRTKGSTISSPTAK
Sbjct: 181 NPTRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAK 240

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TYAI+IVAL Q+DRME+CF L+GHMI+SGCLPDV+TYKE++EGMC+ GK++EAYKFLEEM
Sbjct: 241 TYAIIIVALAQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEM 300

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
           GNK Y PDIVTYNCFLKVLCDNK  ++AL+LYGRMIE+ C PSVQTYNMLISM+FE+ +P
Sbjct: 301 GNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDP 360

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           DGAFETW E+D RGC  D DTYCVMI+GLF+C+K+E+ACFLLEEV+N+G+KLPY+KFDS+
Sbjct: 361 DGAFETWQEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGVKLPYKKFDSF 420

Query: 454 LMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           LMQLSVIGDL AIH+LS+HM+KFYN  +ARR AL+QKR  +SLR K
Sbjct: 421 LMQLSVIGDLQAIHRLSEHMKKFYNHGMARRFALSQKRKSLSLRGK 466


>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/465 (72%), Positives = 381/465 (81%), Gaps = 37/465 (7%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           VSD  KLY+AI +N+N   +MEKALD +GV LTTD V+ +L +  FEEK+AFRFFMWAGH
Sbjct: 233 VSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGH 292

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           QD Y+HEP AYN MIDILSSTKYK KQFR+VC MLDYMKRN+K  VPV+VLLMIL++YTE
Sbjct: 293 QDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE 352

Query: 168 -------------KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
                        KI+VKTQPEINALNLLLDALCK                   P+    
Sbjct: 353 KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCK------------------NPSR--- 391

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
              GM+ LEEMI+MGH PD+FTYNTAID+FCKA MVTEA +LFEFMRTKGST+SSPTAKT
Sbjct: 392 ---GMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKT 448

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           YAIMI+ALVQ+DR EECF L+  MINSG LPDVSTYK+V+EGMCLAGKVEEAYKFLEEMG
Sbjct: 449 YAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMG 508

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           NKGY PDIVTYNCFL VLC+NK  +EAL LYGRMIE GC PSV T+NMLISM+FE+GEPD
Sbjct: 509 NKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPD 568

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           GAFETWHEMDKRGCA+D DTYCVMI+GLF+C+K+E+ACFLL+EVVNKG+KLPYRKFD +L
Sbjct: 569 GAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFL 628

Query: 455 MQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           MQLS+IGDL AIHKLS+HMRKFYNP +ARR ALNQKR  +SLR K
Sbjct: 629 MQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLRGK 673


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/474 (66%), Positives = 379/474 (79%), Gaps = 25/474 (5%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V  L+EAI+ N NAYD+MEKALD   V LTT  V  +LQR Q+EEK AFRFF WAGHQ++
Sbjct: 95  VGILHEAIMANLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEH 154

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-- 168
           Y+HEP+AYN MIDILSSTKYK KQFR+V  MLDYMKRNNK  V VDVLL IL++Y E+  
Sbjct: 155 YSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYL 214

Query: 169 -----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
                      I+VKTQPEINA N+LLDALCKCGLV   E + +R++++VKP+ANT+N+L
Sbjct: 215 THVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVL 274

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                        M+ LEEMI+ GH P+NFTY  AIDTFC+A MV EAADLF+FM TKGS
Sbjct: 275 FFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGS 334

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
            +S+PTAKT+A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+A KV+E
Sbjct: 335 AVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDE 394

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AYKFL+EM NKGYPPDIVTYNCFL+VLC+N+  DEAL+LYGRM+E  C PSVQTYNMLIS
Sbjct: 395 AYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLIS 454

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           M+FE+ +PDGAF TW EMDKR C QDV+TYC MI+GLFDC + +EACFLLEEVVNKGLKL
Sbjct: 455 MFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           PYR FDS+LM+LS +G+L AIHK+S+HM+KFYN  +ARR AL++KR    LR K
Sbjct: 515 PYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSEKRKSTKLRGK 568


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/464 (66%), Positives = 372/464 (80%), Gaps = 25/464 (5%)

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
           N NAYD+MEKALD   V LTT  V  +LQR Q+EEK AFRFF WAGHQ++Y+HEP+AYN 
Sbjct: 3   NLNAYDDMEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNE 62

Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK------------ 168
           MIDILSSTKYK KQFR+V  MLDYMKRN K  VP D+LL IL++Y E+            
Sbjct: 63  MIDILSSTKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYCERYLTHVQKFAKRK 122

Query: 169 -IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------- 217
            I+VKTQPEINA N+LLDALCKCGLV   E + +R++++VKP+A T+N+L          
Sbjct: 123 RIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDP 182

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              M+ LEEMIQ GH P+NFTY  AIDTFC+A MV EAADLFEFM TKGS +S+PTAKT+
Sbjct: 183 KKAMKLLEEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTF 242

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+AGKVEEAYKFL+EM N
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSN 302

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KGYPPDIVTYNCFL+VLC+N+  DEAL+LYGRM+E  C PSVQTYNMLISM+FE+ +PDG
Sbjct: 303 KGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 362

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           AF TW EMD+R C QD++TYCVMI+GLFDC + +EACFLLEEVVNKGLKLPYR FDS+LM
Sbjct: 363 AFNTWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLM 422

Query: 456 QLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           +LS +G+L AIHKLS+HM+KFYN  +ARR AL++KR    LR K
Sbjct: 423 RLSTVGNLKAIHKLSEHMKKFYNHSMARRFALSEKRKSTKLRGK 466


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/464 (66%), Positives = 372/464 (80%), Gaps = 25/464 (5%)

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
           N NAYD+MEKALD   V LTT  V  +LQR Q+EEK AFRFF WAGHQ++Y+HEP+AYN 
Sbjct: 3   NLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNE 62

Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK------------ 168
           MIDILSSTKYK KQFR+V  MLDYMKRNNK  V VDVLL IL++Y E+            
Sbjct: 63  MIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTHVQKFAKRK 122

Query: 169 -IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------- 217
            I+VKTQPEINA N+LLDALCKCGLV   E + +R++++VKP+ANT+N+L          
Sbjct: 123 RIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDP 182

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              M+ LEEMI+ GH P+NFTY  AIDTFC+A MV EAADLF+FM TKGS +S+PTAKT+
Sbjct: 183 KKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 242

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+A KV+EAYKFL+EM N
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSN 302

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KGYPPDIVTYNCFL+VLC+N+  DEAL+LYGRM+E  C PSVQTYNMLISM+FE+ +PDG
Sbjct: 303 KGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 362

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           AF TW EMDKR C QDV+TYC MI+GLFDC + +EACFLLEEVVNKGLKLPYR FDS+LM
Sbjct: 363 AFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLM 422

Query: 456 QLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           +LS +G+L AIHK+S+HM+KFYN  +ARR AL++KR    LR K
Sbjct: 423 RLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSEKRKSTKLRGK 466


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/476 (66%), Positives = 378/476 (79%), Gaps = 25/476 (5%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           ++  KL+ AI+DNS A+ +ME ALD +GV LTTD V  +L R +F+EK+AFRFF WA  Q
Sbjct: 84  TNADKLHRAIVDNSYAHHDMEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQ 143

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
           +NY+HEP  YN MIDILSST+YK KQFR+VC +LDYMKRN+K  VPV+VL  IL+ YT+K
Sbjct: 144 ENYSHEPRVYNEMIDILSSTRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDK 203

Query: 169 -------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
                        + VK QPEINA NLLLDALCKC LV+ AE + K+VK K+KP+ANTYN
Sbjct: 204 YLTCLQKFAKKKKVIVKRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYN 263

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           I+            GM+ LEEMI++G  PDNFTYNTAI +FCKA M+ EA +LFEFMRTK
Sbjct: 264 IMFFGWCRVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTK 323

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           GS +SSPTAKTYAIMIVALV N RMEECF  L +MI SGCLPDVSTYKE++EG+C+AGKV
Sbjct: 324 GSALSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKV 383

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +EAY FLEEMG KGYPPDIVTYNCFLKVLCDNK  D+ALR   RMIEVGC PSVQTYNML
Sbjct: 384 QEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNML 443

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ISM+FE+ + +GAF+ W EMD+ GC +DVD+YC+MI+GLF C+KV +AC LLEEVVNKG+
Sbjct: 444 ISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGM 503

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           KLP+RKFDS+LMQLSV G+L  IH+LS+HMRKFYN  +ARR +LNQKR+ +SLR K
Sbjct: 504 KLPFRKFDSFLMQLSVNGNLKGIHRLSEHMRKFYNRAMARRFSLNQKRMSVSLRGK 559


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/476 (66%), Positives = 378/476 (79%), Gaps = 25/476 (5%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           ++  KL+ AI+DNS A+ +ME ALD +GV LTTD V  +L R +F+EK+AFRFF WA  Q
Sbjct: 84  TNADKLHRAIVDNSYAHHDMEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQ 143

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
           +NY+HEP  YN MIDILSST+YK KQFR+VC +LDYMKRN+K  VPV+VL  IL+ YT+K
Sbjct: 144 ENYSHEPRVYNEMIDILSSTRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDK 203

Query: 169 -------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
                        + VK QPEINA NLLLDALCKC LV+ AE + K+VK K+KP+ANTYN
Sbjct: 204 YLTCLQKFAKKKKVIVKRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYN 263

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           I+            GM+ LEEMI++G  PDNFTYNTAI +FCKA M+ EA +LFEFMRTK
Sbjct: 264 IMXFGWCRVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTK 323

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           GS +SSPTAKTYAIMIVALV N RMEECF  L +MI SGCLPDVSTYKE++EG+C+AGKV
Sbjct: 324 GSALSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKV 383

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +EAY FLEEMG KGYPPDIVTYNCFLKVLCDNK  D+ALR   RMIEVGC PSVQTYNML
Sbjct: 384 QEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNML 443

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ISM+FE+ + +GAF+ W EMD+ GC +DVD+YC+MI+GLF C+KV +AC LLEEVVNKG+
Sbjct: 444 ISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGM 503

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           KLP+RKFDS+LMQLSV G+L  IH+LS+HMRKFYN  +ARR +LNQKR+ +SLR K
Sbjct: 504 KLPFRKFDSFLMQLSVNGNLKGIHRLSEHMRKFYNRAMARRFSLNQKRMSVSLRGK 559


>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
 gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
          Length = 551

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/484 (55%), Positives = 350/484 (72%), Gaps = 28/484 (5%)

Query: 42  DESSDSVSDVAKLYEAIIDN-SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           DE   ++SD  ++Y+A+I   + + +  E ALD+LG  LTT  V  VL R ++EEK+AFR
Sbjct: 70  DERYATLSD--RIYDAVIKTGAESNEGTEAALDALGTELTTPLVADVLHRLRYEEKLAFR 127

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WA HQD Y+HE   YN +IDILS T+YK++QF ++C++LD+MKR+    VPV+ LL 
Sbjct: 128 FFAWASHQDGYSHESATYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGTRSVPVEDLLE 187

Query: 161 ILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           IL+ YTEK             ++++T PE +ALN+LLDA CKCG+V  AE +  RVK ++
Sbjct: 188 ILRAYTEKHLTHMRKLAKKRRVRLRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRRL 247

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
             NA TY+IL             M+ LEEMIQM H P++FTY  AI++FC A +V+EA +
Sbjct: 248 LGNAETYSILFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYIAAIESFCSAGLVSEARE 307

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFEFMRT+GSTISSPTAKTY+IMIVAL + DRMEECF LL  M + GC+PDVSTYKE++E
Sbjct: 308 LFEFMRTEGSTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVSTYKELIE 367

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           GMCL GK++ AY+ LEEMG  G+PPDIVTYNCFL VLC  +  D+AL L  RMIE  C P
Sbjct: 368 GMCLVGKLDAAYRVLEEMGRAGFPPDIVTYNCFLNVLCSLRKADDALELCERMIEAHCEP 427

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           SV TYNML+ M+FE+GE   A + W EMD RGC + +DTY +MIDGLFDC K E A  LL
Sbjct: 428 SVHTYNMLMVMFFEMGEAHRALDIWLEMDTRGCQRAIDTYEIMIDGLFDCGKTEHATSLL 487

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
           +EV+N+ +KL Y+KFD+ +++LS +GDLGAIH+LS+HMR+FYN  ++RR A+ QK+  IS
Sbjct: 488 DEVINRDMKLSYKKFDAIMLRLSAVGDLGAIHRLSEHMRRFYNVAMSRRFAITQKKKSIS 547

Query: 496 LREK 499
           LR K
Sbjct: 548 LRRK 551


>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
 gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 555

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/484 (54%), Positives = 344/484 (71%), Gaps = 28/484 (5%)

Query: 42  DESSDSVSDVAKLYEAIIDNS-NAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           DE   ++SD  ++Y+A+I+ +  + +  E ALD+LG  LTT  V  VL R +++EK+AFR
Sbjct: 74  DERFAALSD--RIYDAVIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFR 131

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF+WA HQD Y HE   YN +IDILS T+YKA+QF ++C +LD+MKR     VPVD LL 
Sbjct: 132 FFVWASHQDGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLG 191

Query: 161 ILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           IL+ YTEK             ++++T PE +ALN+LLDA CKCG+V  AE +  RVK K+
Sbjct: 192 ILRAYTEKHLTHLRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVREAEVVFSRVKRKL 251

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
             NA TY+IL             M+ LEEMIQM H P+NFTYN AID+FC A +V+EA D
Sbjct: 252 LGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARD 311

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFEFMRT+GSTISSPTAKTY+IMI AL +  +MEECF L+  M   GC+PDVSTYK+++E
Sbjct: 312 LFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIE 371

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           GM L  K++ AY  L+EM   G+PPDIVTYNCFLKVLC  +  D+AL L  RMIE  C P
Sbjct: 372 GMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEP 431

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           SV TYNML+ M+FE+ EPD A   W EMDKRGC + VDTY  MIDGLFD  + E+A  LL
Sbjct: 432 SVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALL 491

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
           +EV+N+G+KL Y+KFD+ +++LS +G+LGAIH+LS+HMR+FYN  ++RR A+ QK+  I 
Sbjct: 492 DEVINRGMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFAITQKKKSIG 551

Query: 496 LREK 499
           LR K
Sbjct: 552 LRRK 555


>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Brachypodium distachyon]
          Length = 548

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/484 (53%), Positives = 349/484 (72%), Gaps = 28/484 (5%)

Query: 42  DESSDSVSDVAKLYEAIIDNS-NAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           +E   S+SD  ++Y+A+      + D  E ALD+LG  LTT  V  V+ R ++EEK+AFR
Sbjct: 67  EERVASLSD--RIYDAVTGTEEGSNDGTEAALDALGAELTTPLVSDVMHRLRYEEKLAFR 124

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WA  QDNY H+  AYN +ID LS T+YKA+QF ++C +LD+MKR+    VPV+ LL 
Sbjct: 125 FFAWASQQDNYEHDQAAYNEVIDTLSGTRYKARQFGVLCDVLDHMKRHRTRSVPVEDLLA 184

Query: 161 ILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           IL+ YTEK             ++++T PE +ALN+LLDA CKCG+V  AET+  RVK K+
Sbjct: 185 ILRAYTEKHLTNLRKLAKKRRVRMRTPPETDALNILLDAFCKCGMVREAETVFGRVKRKL 244

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           + NA TYNIL             M+ LEEMI M HAP++FTY  AID+FC A +V+EA +
Sbjct: 245 QGNAETYNILFFGWCRARDPKKAMKVLEEMILMKHAPESFTYIAAIDSFCSAGLVSEAKE 304

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFEFMRT+GS+ISSPTAK Y++MIVALV+ DRM++CF L+  MI  GC+PDVST+K+++E
Sbjct: 305 LFEFMRTEGSSISSPTAKAYSVMIVALVKADRMDDCFELISDMIKLGCMPDVSTFKDLIE 364

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           GMCL  K++ AY  LEEMG  G+PPDIVTYNCFL+VLC+ +  D+AL+L  RMIE  C P
Sbjct: 365 GMCLVDKIDTAYFVLEEMGKAGFPPDIVTYNCFLEVLCNLQKADDALKLCERMIEAHCEP 424

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           SV TYNML+ M+F++ EP  A + W EMDKRGC + VDTY +MIDGLFDC + E+A  LL
Sbjct: 425 SVHTYNMLMVMFFQMREPHRALDIWLEMDKRGCRRAVDTYEIMIDGLFDCGRTEDATNLL 484

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
           +EV+N  +KL Y+KFD+ ++QLS +G+LGAIH+LS+HMRKFYN  ++RR ++ QK+  I 
Sbjct: 485 DEVINHDMKLSYKKFDAIMLQLSAVGNLGAIHRLSEHMRKFYNVAMSRRFSITQKKKSIG 544

Query: 496 LREK 499
           +R +
Sbjct: 545 MRRR 548


>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/484 (53%), Positives = 347/484 (71%), Gaps = 28/484 (5%)

Query: 42  DESSDSVSDVAKLYEAIIDN-SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           DE   ++SD  ++Y+A+I   + + +  E ALD+LG  LTT  V  VL R ++EEK+AFR
Sbjct: 70  DERFATLSD--RIYDAVIKTGTESNEGTEAALDALGAELTTPLVADVLHRLRYEEKLAFR 127

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WA  QD Y+HEP  YN +IDILS T+YK++QF ++C++LD+MKR+    VPV+ LL 
Sbjct: 128 FFAWASQQDGYSHEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEGLLE 187

Query: 161 ILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           IL+ YTEK             ++++T PE +ALN+LLDA CKCG+V  AE +  RVK K+
Sbjct: 188 ILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKL 247

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
             NA TY+ L             M+ LEEMIQM H P++FTY  AI++FC A +V+EA +
Sbjct: 248 LGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIESFCSAGLVSEARE 307

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFEFMRT+G T+SSPTAKTY+IMIVAL + DRMEECF LL  M   GC+PDV+TYK+++E
Sbjct: 308 LFEFMRTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIE 367

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           GMCL G+++ AY+ L+EMG  G+PPDIVTYNCFL VLC  +N D+AL L  RMIE  C P
Sbjct: 368 GMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEP 427

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           SV TYNML+ M+FE+GE   A + W EMDKRGC + +DTY +MI GLFDC + E A  LL
Sbjct: 428 SVHTYNMLMMMFFEMGEAHRALDIWLEMDKRGCQRAIDTYEIMIYGLFDCGETEYATALL 487

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
           +EV+N+ +KL Y+KFD+ +++LS +G+LGAIH+LS+HMRKFYN  ++RR A+ QK+  I 
Sbjct: 488 DEVINRDMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRKFYNVAMSRRFAITQKKKSIG 547

Query: 496 LREK 499
           LR K
Sbjct: 548 LRRK 551


>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
          Length = 555

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/484 (54%), Positives = 342/484 (70%), Gaps = 28/484 (5%)

Query: 42  DESSDSVSDVAKLYEAIIDNS-NAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           DE   ++SD  ++Y+A+I+ +  + +  E ALD+LG  LTT  V  VL R +++EK+AFR
Sbjct: 74  DERFAALSD--RIYDAVIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFR 131

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF+WA HQ  Y HE   YN +IDILS T+YKA+QF ++C +LD+MKR     VPVD LL 
Sbjct: 132 FFVWASHQGGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLG 191

Query: 161 ILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           IL+ YTEK             ++++T PE +ALN+LLDA CK G+V  AE +  RVK K+
Sbjct: 192 ILRAYTEKHLTHLRKLAKKRRVRMRTPPETDALNVLLDAFCKSGMVREAEAVFSRVKRKL 251

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
             NA TY+IL             M+ LEEMIQM H P+NFTYN AID+FC A +V+EA D
Sbjct: 252 LGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARD 311

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFEFMRT+GSTISSPTAKTY+IMI AL +  +MEECF L+  M   GC+PDVSTYK+++E
Sbjct: 312 LFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIE 371

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           GM L  K++ AY  L+EM   G+PPDIVTYNCFLKVLC  +  D+AL L  RMIE  C P
Sbjct: 372 GMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEP 431

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           SV TYNML+ M+FE+ EPD A   W EMDKRGC + VDTY  MIDGLFD  + E+A  LL
Sbjct: 432 SVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATTLL 491

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
           +EV+N+G+KL Y+KFD+ +++LS +G+LGAIH+LS+HMR+FYN  ++RR A+ QK+  I 
Sbjct: 492 DEVINRGMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFAITQKKKSIG 551

Query: 496 LREK 499
           LR K
Sbjct: 552 LRRK 555


>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/484 (53%), Positives = 345/484 (71%), Gaps = 28/484 (5%)

Query: 42  DESSDSVSDVAKLYEAIIDN-SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           DE   ++SD  ++Y+A+I   + + +  E ALD+LG  LTT  V  VL R  +EEK+AFR
Sbjct: 70  DERFATLSD--RIYDAVIKTGTESNEGTEAALDALGAELTTPLVADVLHRLLYEEKLAFR 127

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WA  QD Y+HEP  YN +IDILS T+YK++QF ++C++LD+MKR+    VPV+ LL 
Sbjct: 128 FFAWASQQDGYSHEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEGLLE 187

Query: 161 ILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           IL+ YTEK             ++++T PE +ALN+LLDA CKCG+V  AE +  RVK K+
Sbjct: 188 ILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKL 247

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
             NA TY+ L             M+ LEEMIQM H P++FTY  AI++FC A +V+EA +
Sbjct: 248 LGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIESFCSAGLVSEARE 307

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFEFMRT+G T+SSPTAKTY+IMIVAL + DRMEECF LL  M   GC+PDV+TYK+++E
Sbjct: 308 LFEFMRTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIE 367

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           GMCL G+++ AY+ L+EMG  G+PPDIVTYNCFL VLC  +N D+AL L  RMIE  C P
Sbjct: 368 GMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEP 427

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           SV TYNML+ M+FE+GE   A + W EMDKRGC + +DTY +MI GLFDC + E A  LL
Sbjct: 428 SVHTYNMLMMMFFEMGEAHRALDIWLEMDKRGCQRAIDTYEIMIYGLFDCGETEYATALL 487

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
           +EV+N+ +KL Y+KFD+ +++LS +G+LGAIH+LS+HMRKFYN  ++RR A+ QK+  I 
Sbjct: 488 DEVINRDMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRKFYNVAMSRRFAITQKKKSIG 547

Query: 496 LREK 499
           L  K
Sbjct: 548 LIRK 551


>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
          Length = 520

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/472 (53%), Positives = 335/472 (70%), Gaps = 25/472 (5%)

Query: 53  KLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYA 112
           ++Y+A+I      +  + ALD+LG  LTT  V  VL R ++EEK+AFRFF WA  QD Y 
Sbjct: 49  RIYDAVIKTGTESNAGKAALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYN 108

Query: 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK---- 168
           HEP  YN +IDILS T+YK++QF ++C++LD+MKR+    VPV+ LL IL+ YTEK    
Sbjct: 109 HEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEDLLEILRAYTEKHLTH 168

Query: 169 ---------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
                    ++++T PE +ALN+LLDA CKCG+V  AE +  RVK K+  NA TY+ L  
Sbjct: 169 MRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFF 228

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M+ LEEMIQM H P++FTY  AI +FC A +V+EA +LFEFMRT+G TI
Sbjct: 229 GWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTI 288

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
           SSPTAKTY+IMIVAL + DRMEECF LL  M + GC+PDV+TYK+++EGMCL GK++ AY
Sbjct: 289 SSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAY 348

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L+EMG  G+PPDIVTYNCFL V C ++  D+AL L  RMIE  C PSV TYNM++ M+
Sbjct: 349 RVLDEMGRAGFPPDIVTYNCFLNVFCSHRKADDALELCERMIEAHCEPSVHTYNMMMMMF 408

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           FE+GE   A +   EMDKR C + +DTY +MI GLFDC + E A  LL+EV+N+ +KL Y
Sbjct: 409 FEMGEAHRALDICLEMDKRRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSY 468

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           +KFD+ +++LS +G+LGAIH+LS+HMRKFYN  +ARR A+ QK+  I LR K
Sbjct: 469 KKFDAIMLRLSDVGNLGAIHRLSEHMRKFYNVAMARRFAITQKKKSIGLRRK 520


>gi|255561709|ref|XP_002521864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538902|gb|EEF40500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 428

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 259/452 (57%), Positives = 316/452 (69%), Gaps = 70/452 (15%)

Query: 46  DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA 105
           D+V+D  K Y  ++++SN   +MEKAL+ L + LTTD VV VL R +FEEKIAFRFFMWA
Sbjct: 42  DNVAD--KTYAVVMESSN---HMEKALNQLNLELTTDLVVEVLLRLRFEEKIAFRFFMWA 96

Query: 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165
           G Q NY HEP AYN M+DILSSTKYK KQFR+VC MLDYMKRNNK  VPV+VLL IL+ Y
Sbjct: 97  GRQQNYTHEPCAYNEMMDILSSTKYKVKQFRIVCDMLDYMKRNNKNIVPVEVLLTILRNY 156

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           T+K     Q                    +A+   KR++ K +P  N +N+L        
Sbjct: 157 TQKYLTHVQK-------------------FAKK--KRIRVKTQPEINAFNLL-------- 187

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
                          +D  CK  +V +A  +F+ ++ K                     N
Sbjct: 188 ---------------LDALCKCSLVEDAETIFKRVKNK---------------------N 211

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           DRM+EC  LLGHMINSGCLPDVSTYKE++EGMCLAGK++EAY+ L+EMGNKGYPPDIVTY
Sbjct: 212 DRMDECSKLLGHMINSGCLPDVSTYKELMEGMCLAGKIDEAYRVLQEMGNKGYPPDIVTY 271

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           NCFLKVLC+N   DEALRLYGRMIEV C PSVQTYNMLISMYFE+G+PDGAF+TW EM  
Sbjct: 272 NCFLKVLCENMKSDEALRLYGRMIEVDCLPSVQTYNMLISMYFEMGDPDGAFDTWDEMHN 331

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           RGCA+D+DTY VMIDGLF C+KV++AC L+E+V+ KG+KLPY+KFDS+LM+LS IGDL  
Sbjct: 332 RGCAKDIDTYSVMIDGLFGCNKVQDACLLIEDVMTKGMKLPYQKFDSFLMKLSEIGDLQT 391

Query: 466 IHKLSDHMRKFYNPVIARRLALNQKRVRISLR 497
           IHKLS+HMRK+YN  +ARR ALN+KR  +S R
Sbjct: 392 IHKLSEHMRKYYNSSMARRFALNEKRKSMSFR 423


>gi|413932621|gb|AFW67172.1| PHD finger protein [Zea mays]
          Length = 1166

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/435 (50%), Positives = 296/435 (68%), Gaps = 35/435 (8%)

Query: 47  SVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAG 106
           S   + ++Y+A+I      +  + ALD+LG  LTT  V  VL R ++EEK+AFRFF WA 
Sbjct: 435 SSKKMRQIYDAVIKTGTESNAGKAALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWAS 494

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
            QD Y HEP  YN +IDILS T+YK++QF ++C++LD+MKR+    VPV+ LL IL+ YT
Sbjct: 495 QQDGYNHEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEDLLEILRAYT 554

Query: 167 EK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
           EK             ++++T PE +ALN+LLDA CKCG+V  AE +  RVK K+  NA T
Sbjct: 555 EKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAET 614

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L             M+ LEEMIQM H P++FTY  AI +FC A +V+EA +LFEFMR
Sbjct: 615 YSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMR 674

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           T+G TISSPTAKTY+IMIVAL + DRMEECF LL  M + GC+PDV+TYK+++EGMCL G
Sbjct: 675 TEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVG 734

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K++ AY+ L+EMG  G+PPDIVT+          +  D+AL L  RMIE  C PSV TYN
Sbjct: 735 KLDAAYRVLDEMGRAGFPPDIVTH----------RKADDALELCERMIEAHCEPSVHTYN 784

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           M++ M+FE+GE   A +   EMDKR C + +DTY +MI GLFDC + E A  LL+EV+N+
Sbjct: 785 MMMMMFFEMGEAHRALDICLEMDKRRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINR 844

Query: 442 GLKLPYRKFDSYLMQ 456
            +KL Y+KFD+ +++
Sbjct: 845 DMKLSYKKFDAIMLR 859


>gi|212275500|ref|NP_001130935.1| uncharacterized protein LOC100192040 [Zea mays]
 gi|194690482|gb|ACF79325.1| unknown [Zea mays]
          Length = 380

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/380 (54%), Positives = 270/380 (71%), Gaps = 25/380 (6%)

Query: 145 MKRNNKVFVPVDVLLMILKQYTEK-------------IKVKTQPEINALNLLLDALCKCG 191
           MKR+    VPV+ LL IL+ YTEK             ++++T PE +ALN+LLDA CKCG
Sbjct: 1   MKRHGSRSVPVEDLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCG 60

Query: 192 LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNT 239
           +V  AE +  RVK K+  NA TY+ L             M+ LEEMIQM H P++FTY  
Sbjct: 61  MVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVA 120

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
           AI +FC A +V+EA +LFEFMRT+G TISSPTAKTY+IMIVAL + DRMEECF LL  M 
Sbjct: 121 AIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMR 180

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
           + GC+PDV+TYK+++EGMCL GK++ AY+ L+EMG  G+PPDIVTYNCFL V C ++  D
Sbjct: 181 SCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVFCSHRKAD 240

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +AL L  RMIE  C PSV TYNM++ M+FE+GE   A +   EMDKR C + +DTY +MI
Sbjct: 241 DALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALDICLEMDKRRCQRAIDTYEIMI 300

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            GLFDC + E A  LL+EV+N+ +KL Y+KFD+ +++LS +G+LGAIH+LS+HMRKFYN 
Sbjct: 301 YGLFDCGETEYATALLDEVINRDMKLSYKKFDAIMLRLSDVGNLGAIHRLSEHMRKFYNV 360

Query: 480 VIARRLALNQKRVRISLREK 499
            +ARR A+ QK+  I LR K
Sbjct: 361 AMARRFAITQKKKSIGLRRK 380


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 148/479 (30%), Positives = 247/479 (51%), Gaps = 41/479 (8%)

Query: 47  SVSDVAKLYEA--IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           S +D A++++   +ID   A D NME  LD  G+ L+ D V+ VL+RF+   K AFRFF 
Sbjct: 69  STADPAEVHKVCKVIDELFALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFC 128

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
           WA  +  + H+   Y+ M+ IL+    KA+QF  + SML+ M    K  + +D   + ++
Sbjct: 129 WAAEKPGFVHDSRTYHSMMIILA----KARQFETMMSMLEEM--GEKRLLTLDTFSIAMR 182

Query: 164 QYT---EKIKV----------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
            +    E+ K           K +  +  +N LLD+L +  L   A+ +  +++ +  PN
Sbjct: 183 AFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFGKLEGRFTPN 242

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             TY +L              +   EM+  G  PD  T+N  ++   +++  ++A   FE
Sbjct: 243 LRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFE 302

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M+ KG    SP  ++Y I+I  L +  +M+E       M++SGC PD + Y  ++ G  
Sbjct: 303 VMKAKGP---SPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYG 359

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
              +++  Y+ L+EM  KG PPD  TYN  +K++   +  D+A+R+Y +MI+ G  PS+ 
Sbjct: 360 NHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIH 419

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           +YNM++  YF +   +     W EM K+G   D ++Y V I GL    + EEAC  LEE+
Sbjct: 420 SYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEM 479

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR---KF-YNPVIARRLALNQKRVR 493
           + KG+K P   ++ +    S  G    + +L+  M+   KF  + V AR   + +KRV+
Sbjct: 480 IEKGMKAPQLDYNKFAADFSRAGKPDILEELAQKMKFSGKFEVSNVFARWAEMMKKRVK 538


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 229/458 (50%), Gaps = 37/458 (8%)

Query: 44  SSDSVSDVAKLYEA--IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           S +S +D  ++     +ID   A D NME  LD  GV L+ D VV VLQRF+   K AFR
Sbjct: 164 SGESCADPVEVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFR 223

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WAG +  +AH+   YN M+ +L  T+    QF  + +ML+ M    K  + ++   +
Sbjct: 224 FFCWAGKRPGFAHDSRTYNFMMCVLGRTR----QFETMVAMLEEM--GEKGLLTMETFSI 277

Query: 161 ILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
            +K + E  + K              +  ++ +N LLD+L    L   A+ + +++K++ 
Sbjct: 278 AIKAFAEAKQRKKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRF 337

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            P+  TY IL              +   EMI  G  PD   +N  ++   K +  ++A  
Sbjct: 338 TPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIK 397

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFE M+ KG    SP  ++Y IMI    +   M E       M++ GC PD + Y  ++ 
Sbjct: 398 LFEIMKAKGP---SPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLIT 454

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G     K++  Y  L+EM  +G PPD  TYN  +K++      D+A+R+Y +MI+ G  P
Sbjct: 455 GFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKP 514

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           ++ TYNM++  YF     +   E W EM ++GC  D ++Y V I GL    +  EAC  L
Sbjct: 515 TIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYL 574

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           EE++ KG+K P   ++ +   +S  G+   + +L+  M
Sbjct: 575 EEMLEKGMKAPKLDYNKFASDISKTGNAVILEELARKM 612


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 235/470 (50%), Gaps = 47/470 (10%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +ID   A D NME  LD  G+ L+ D V+ VL+RF    K AFRFF WAG +  + H+  
Sbjct: 71  VIDELFALDRNMEAVLDECGINLSHDLVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSR 130

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN-----------KVFVPVD------VLL 159
            YN M+ IL+ T+    QF  V SML+ M               + F           + 
Sbjct: 131 TYNSMMSILAKTR----QFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKKAVAMF 186

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
            ++K+Y  K+ V+T      +N LLD+L +  L   A+ + + +K +  PN  TY +L  
Sbjct: 187 ELMKKYNYKVGVET------INHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLN 240

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                           EMI  G  PD   +N  ++   +++  ++A  LF  M+ KG   
Sbjct: 241 GWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGP-- 298

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            SP  ++Y I+I  L +  +MEE       MI+SGC PD + Y  ++ G     +++  Y
Sbjct: 299 -SPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVY 357

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             L+EM  +G PPD +TYN  +K++   K  D+A R+Y +M + G  P++ TYNM++  Y
Sbjct: 358 DLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSY 417

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           F+    +     W EM ++G   D ++Y V+I GL    +  EAC  LEE++ KG+K P 
Sbjct: 418 FQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQ 477

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMR---KF-YNPVIARRLALNQKRVR 493
             ++ +   LS  G+   + +L+  ++   KF  + V+A    + QKRV+
Sbjct: 478 LDYNKFGADLSRGGNPDILEELAQRLKFSGKFGVSNVLASWAGMIQKRVK 527


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/464 (31%), Positives = 231/464 (49%), Gaps = 35/464 (7%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +ID   A D NME  LD   V L+   VVGVL+RF+   K AFRFF WAG +  + H   
Sbjct: 211 VIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSR 270

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN----KVFVPVDVLLMILKQYTEKIKV- 171
            YN M+ +L  T+    QF  +  ML  M        + F          K+  + + V 
Sbjct: 271 TYNAMMSVLGRTR----QFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVF 326

Query: 172 ------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
                      ++ +N LLD L +  L   A+ + ++++++  PN  TY +L        
Sbjct: 327 ELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIK 386

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +T  EMI  G  PD   ++T ++   K +  ++A  LFE M+ KG    SP  +
Sbjct: 387 NLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGP---SPNVR 443

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I+I  L +  +M+E       M++SGC PD + Y  ++ G     K+++ Y  L+EM
Sbjct: 444 TYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 503

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG P D  TYN  +K++ + +  D+A+R+Y +MI+ G  P++ TYNM++  YF     
Sbjct: 504 KEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNY 563

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           +     W EM ++GC  D ++Y V I GL    + EEAC  LEE++ KG+K P   ++ +
Sbjct: 564 EMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKF 623

Query: 454 LMQLSVIGDLGAIHKLSDHMR---KF-YNPVIARRLALNQKRVR 493
               S  G    + +L+  M+   KF  + V AR   + +KRV+
Sbjct: 624 AADFSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVK 667


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 230/464 (49%), Gaps = 35/464 (7%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +ID   A D NME  LD   V L+   VVGVL+RF+   K AFRFF WAG +  + H   
Sbjct: 211 VIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSR 270

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN----KVFVPVDVLLMILKQYTEKIKV- 171
            YN M+ +L  T+    QF  +  ML  M        + F          K+  + + V 
Sbjct: 271 TYNAMMSVLGRTR----QFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVF 326

Query: 172 ------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
                      ++ +N LLD L +  L   A+ + ++++++  PN  TY +L        
Sbjct: 327 ELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIK 386

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +T  EMI  G  PD   ++T ++   K +  ++A  LFE M+ KG    SP  +
Sbjct: 387 NLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGP---SPNVR 443

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I+I  L +  +M+E       M++SGC PD + Y  ++ G     K+++ Y  L+EM
Sbjct: 444 TYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 503

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG P D  TYN  +K++ + +  D+A+R+Y +MI+ G   ++ TYNM++  YF     
Sbjct: 504 KEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNY 563

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           +     W EM ++GC  D ++Y V I GL    + EEAC  LEE++ KG+K P   ++ +
Sbjct: 564 EMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKF 623

Query: 454 LMQLSVIGDLGAIHKLSDHMR---KF-YNPVIARRLALNQKRVR 493
               S  G    + +L+  M+   KF  + V AR   + +KRV+
Sbjct: 624 AADFSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVK 667


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 147/470 (31%), Positives = 230/470 (48%), Gaps = 47/470 (10%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +ID   A D NME  LD  GV L+ D V+ VL RF+   K AFRFF WA  +  +AH+  
Sbjct: 151 VIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSK 210

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN-----------KVFVPVDV------LL 159
            YN M+ IL  T+    QF  + S+L+ M               K F           +L
Sbjct: 211 TYNTMMTILGKTR----QFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKKAVGVL 266

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
            ++K+Y  K+ V+T      +N LLD+L +  L   A TI +++  +  PN  TY +L  
Sbjct: 267 ELMKKYKYKVGVET------INCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLN 320

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       +   +MI     PD   +NT ++   + +  ++A  LFE M+ KG   
Sbjct: 321 GWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGP-- 378

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            SP  K+Y I++    +  +M+E       M  +GC PD + Y  ++ G     +++  Y
Sbjct: 379 -SPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVY 437

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             L+EM   G PPD  TYN  +K++ + +  D+A+R+Y +MIE G  P+  TY+M++  Y
Sbjct: 438 GLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSY 497

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           F+    +     W EM  +GC  D ++Y V I GL    +  EA   LEE++ KG+K P 
Sbjct: 498 FQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQ 557

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMR---KF-YNPVIARRLALNQKRVR 493
             ++ +    S  G    + +L+  M+   KF  + VIAR   + +KRV+
Sbjct: 558 LDYNKFAADFSRAGRPDILEELAQKMKFSGKFEASNVIARWAEMMRKRVK 607


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 227/461 (49%), Gaps = 43/461 (9%)

Query: 44  SSDSVSDVAKLYEA--IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           S +S +D  ++     +ID   A D NME  LD  GV L+ D VV VLQRF+   K AFR
Sbjct: 26  SGESCADPVEVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFR 85

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF  AG +  +AH+   YN M+ +L  T+    QF  + + L+ M    K  + ++   +
Sbjct: 86  FFCXAGKRPGFAHDSRTYNFMMCVLGRTR----QFETMVAKLEEM--GEKGLLTMETFSI 139

Query: 161 ILKQYTEKIKVKTQPEI-------------NALNLLLDALCKCGLVDYAETICKRVKNKV 207
            +K + E  + K +  I             + +N LLD+L    L   A+ + +++K++ 
Sbjct: 140 AIKAFAEAKQRKKEVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRF 199

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            P+  TY IL              +   EMI  G  PD   +N  ++   K +  ++A  
Sbjct: 200 TPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIK 259

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LFE M+ KG    SP  ++Y IMI    +   M E       M++ GC PD + Y  ++ 
Sbjct: 260 LFEIMKAKGP---SPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLIT 316

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G     K++  Y  L+EM  +G PPD  TYN  +K++      D+A+R+Y +MI+ G  P
Sbjct: 317 GFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKP 376

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           ++ TYNM++  YF     +   E W EM  +GC  D ++Y V I GL    +  EAC  L
Sbjct: 377 TIHTYNMIMKSYFVTKNYEMGHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEACKYL 436

Query: 436 EEVVNKG---LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           EE++ KG   LKL Y KF S    +S  G+   + +L+  M
Sbjct: 437 EEMLEKGMKALKLDYNKFAS---DISKTGNAVILEELARKM 474


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 137/426 (32%), Positives = 213/426 (50%), Gaps = 46/426 (10%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +ID   A D NME  LD + V L+ D +V VL+RF+   K AFRFF WA  +  +AH+  
Sbjct: 146 VIDELFALDRNMEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFFCWAAEKQGFAHDSR 205

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM---------------- 160
            YN M+ IL+ T+    QF  + S+L+ M     + +    + M                
Sbjct: 206 TYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIF 261

Query: 161 -ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
            ++K+Y  KI V+T      +N LLD+L +  L   A+ +  ++K +  PN  TY +L  
Sbjct: 262 ELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 315

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       +   +MI  G  PD   +N  ++   ++R  ++A  LF  M++KG   
Sbjct: 316 GWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPC- 374

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P  ++Y IMI    +   ME        M++SG  PD + Y  ++ G     K++  Y
Sbjct: 375 --PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVY 432

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L+EM  KG+PPD  TYN  +K++ + K  + A R+Y +MI+    PS+ T+NM++  Y
Sbjct: 433 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSY 492

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP- 446
           F     +     W EM K+G   D ++Y V+I GL    K  EAC  LEE+++KG+K P 
Sbjct: 493 FMARNYEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPL 552

Query: 447 --YRKF 450
             Y KF
Sbjct: 553 IDYNKF 558



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 110/284 (38%), Gaps = 34/284 (11%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI 216
           L+   + + + I    +P+I A N++L+ L +      A  +   +K+K   PN  +Y I
Sbjct: 323 LIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTI 382

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++  ++M+  G  PD   Y   I  F   + +    +L + M+ KG
Sbjct: 383 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 442

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P  KTY  +I  +      E    +   MI +   P + T+  +++   +A   E
Sbjct: 443 H---PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYE 499

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                 +EM  KG  PD  +Y   ++ L       EA R    M++ G    +  YN   
Sbjct: 500 MGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFA 559

Query: 385 SMYFELGEPD------------------GAFETWHEMDKRGCAQ 410
           + + + G+P+                    F  W +M +R C Q
Sbjct: 560 ADFHKGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 603


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 222/441 (50%), Gaps = 47/441 (10%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           ESS +  +V ++ + +ID   A D NME  LD + + L+ D +V VL+RF+   K AFRF
Sbjct: 123 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 181

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
           F WA  +  +AH+   YN M+ IL+ T+    QF  + S+L+ M     + +    + M 
Sbjct: 182 FCWAAERQGFAHDSRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 237

Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
                           ++K+Y  KI V+T      +N LLD+L +  L   A+ +  ++K
Sbjct: 238 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 291

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            +  PN  TY +L              +   +MI  G  PD   +N  ++   ++R  ++
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  LF  M++KG     P  ++Y IMI    +   ME        M++SG  PD + Y  
Sbjct: 352 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 408

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++ G     K++  Y+ L+EM  KG+PPD  TYN  +K++ + K  + A R+Y +MI+  
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE 468

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             PS+ T+NM++  YF     +     W EM K+G   D ++Y V+I GL    K  EAC
Sbjct: 469 IEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREAC 528

Query: 433 FLLEEVVNKGLKLP---YRKF 450
             LEE+++KG+K P   Y KF
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKF 549



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 106/263 (40%), Gaps = 20/263 (7%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI 216
           L+   + + + I    +P+I A N++L+ L +      A  +   +K+K   PN  +Y I
Sbjct: 314 LIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTI 373

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++  ++M+  G  PD   Y   I  F   + +    +L + M+ KG
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P  KTY  +I  +      E    +   MI +   P + T+  +++   +A   E
Sbjct: 434 H---PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYE 490

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                 EEM  KG  PD  +Y   ++ L       EA R    M++ G    +  YN   
Sbjct: 491 MGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550

Query: 385 SMYFELGEPDGAFETWHEMDKRG 407
           + +   G+P    E + E+ +R 
Sbjct: 551 ADFHRGGQP----EIFEELAQRA 569


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 220/441 (49%), Gaps = 47/441 (10%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           ESS +  +V ++ + +ID   A D NME  LD + + L+ D +V VL+RF+   K AFRF
Sbjct: 122 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 180

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
           F WA  +  +AH+   YN M+ IL+ T+    QF  + S+L+ M     + +    + M 
Sbjct: 181 FCWAAERQGFAHDSRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 236

Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
                           ++K+Y  KI V+T      +N LLD+L +  L   A+ +  ++K
Sbjct: 237 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 290

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            +  PN  TY +L              +   +MI  G  PD   +N  ++   ++   ++
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  LF  M++KG     P  ++Y IMI    +   ME        M++SG  PD + Y  
Sbjct: 351 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 407

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++ G     K++  Y+ L+EM  KG+PPD  TYN  +K++ + K  +   R+Y +MI+  
Sbjct: 408 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 467

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             PS+ T+NM++  YF     +     W EM K+G   D ++Y V+I GL    K  EAC
Sbjct: 468 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 527

Query: 433 FLLEEVVNKGLKLP---YRKF 450
             LEE+++KG+K P   Y KF
Sbjct: 528 RYLEEMLDKGMKTPLIDYNKF 548



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 34/284 (11%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI 216
           L+   + + + I    +P+I A N++L+ L +      A  +   +K+K   PN  +Y I
Sbjct: 313 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 372

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++  ++M+  G  PD   Y   I  F   + +    +L + M+ KG
Sbjct: 373 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 432

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P  KTY  +I  +      E    +   MI +   P + T+  +++   +A   E
Sbjct: 433 H---PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYE 489

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                 +EM  KG  PD  +Y   ++ L       EA R    M++ G    +  YN   
Sbjct: 490 MGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 549

Query: 385 SMYFELGEPD------------------GAFETWHEMDKRGCAQ 410
           + +   G+P+                    F  W +M +R C Q
Sbjct: 550 ADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 593


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 219/441 (49%), Gaps = 47/441 (10%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           ESS +  +V ++ + +ID   A D NME  LD + + L+ D +V VL+RF+   K AFRF
Sbjct: 123 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 181

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
           F WA  +  +AH    YN M+ IL+ T+    QF  + S+L+ M     + +    + M 
Sbjct: 182 FCWAAERQGFAHASRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 237

Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
                           ++K+Y  KI V+T      +N LLD+L +  L   A+ +  ++K
Sbjct: 238 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 291

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            +  PN  TY +L              +   +MI  G  PD   +N  ++   ++   ++
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 351

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  LF  M++KG     P  ++Y IMI    +   ME        M++SG  PD + Y  
Sbjct: 352 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 408

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++ G     K++  Y+ L+EM  KG+PPD  TYN  +K++ + K  +   R+Y +MI+  
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 468

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             PS+ T+NM++  YF     +     W EM K+G   D ++Y V+I GL    K  EAC
Sbjct: 469 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 528

Query: 433 FLLEEVVNKGLKLP---YRKF 450
             LEE+++KG+K P   Y KF
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKF 549



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 34/284 (11%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI 216
           L+   + + + I    +P+I A N++L+ L +      A  +   +K+K   PN  +Y I
Sbjct: 314 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 373

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++  ++M+  G  PD   Y   I  F   + +    +L + M+ KG
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P  KTY  +I  +      E    +   MI +   P + T+  +++   +A   E
Sbjct: 434 H---PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYE 490

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                 +EM  KG  PD  +Y   ++ L       EA R    M++ G    +  YN   
Sbjct: 491 MGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550

Query: 385 SMYFELGEPD------------------GAFETWHEMDKRGCAQ 410
           + +   G+P+                    F  W +M +R C Q
Sbjct: 551 ADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 594


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 222/460 (48%), Gaps = 39/460 (8%)

Query: 44  SSDSVSDVAKLYEAIID--NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           +S     V ++  AI D   + A  N+E  L +L  PL+   V+ VL RF+   + + RF
Sbjct: 165 ASSHPEHVGRVCAAIADVMAAGADANLEATLSALSPPLSEALVLAVLDRFKHAHRPSRRF 224

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161
           F WA   D + H P+ Y  M+ IL     KA+QF  + +++  M +   + +  D   + 
Sbjct: 225 FQWAAASDEFEHTPVTYCKMLHILG----KARQFETMVALVQEMGKAGALCM--DAFKIA 278

Query: 162 LKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK 208
           +K +    ++K                 + + N LL AL + GL   A  +  R++++  
Sbjct: 279 IKSFAAAGEIKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQYT 338

Query: 209 PNANTYNILGM------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P+  +Y  L +            +   +M++ G  PD   +NT ID   + +   EA  +
Sbjct: 339 PDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKM 398

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           FE M+ KG     P   TY ++I    +  +++        M  +GC P+V+TY  +L G
Sbjct: 399 FELMKAKGP---PPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVG 455

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              A +++     LEEM  KG PPD  TYN  +K+L +    D+A+R+Y +MI  G  P+
Sbjct: 456 YGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPT 515

Query: 377 VQTYNMLISMYFELGEPDGAF--ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           + TYNM++  YF LG  + A     W EM ++G   DV++Y V I+G     +  EAC  
Sbjct: 516 IHTYNMMMKSYF-LGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKF 574

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           LEE++ KG+K P   ++ +    S  G    +++L+  ++
Sbjct: 575 LEEMIQKGMKAPQIDYNKFAADFSKAGKPDILYELAQKVK 614


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 221/462 (47%), Gaps = 39/462 (8%)

Query: 42  DESSDSVSDVAKLYEAIID--NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
           D ++ +   V ++  AI D   + A  N+E AL +L  PL    V+ VL RF+   + ++
Sbjct: 151 DAATSNPEGVGRVCAAIADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSY 210

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
           RFF WA     + H  + Y  M+ IL  T+    QF  + ++L  M +   +   +D   
Sbjct: 211 RFFRWATASGGFTHTTITYCKMLLILGKTR----QFESMVALLQEMGKAGTL--SMDAFK 264

Query: 160 MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
           + +K +    ++K                 + + N LL AL   GL   A  +  ++  +
Sbjct: 265 VAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQ 324

Query: 207 VKPNANTYNILGM------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
             P+  +Y  L +            +   EM++ G  PD   +NT I+   + +   EA 
Sbjct: 325 YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAV 384

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            +FE M+ KG     P   TY ++I    +  +M+        M  + C PDV+TY  +L
Sbjct: 385 KMFELMKAKGP---PPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLL 441

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G   A +++     LEEM  KG PPD  TYN  +K+L + K  D+A R+Y +MI+ G  
Sbjct: 442 VGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLD 501

Query: 375 PSVQTYNMLISMYFELGEPDGAF--ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           P++ TYNM++  YF LG+ + A     W EM +RG   DV++Y V I G     + EEA 
Sbjct: 502 PTIHTYNMMMKSYF-LGDRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAY 560

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             +EE++NKG+K P    + +   LS  G L  +++L+  ++
Sbjct: 561 KYIEEMINKGMKAPQIDCNKFAADLSKAGKLDMLYELAQKVK 602


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 206/408 (50%), Gaps = 35/408 (8%)

Query: 62  SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121
           S++   ++ ALD  GV ++   V  VL++F+    +A+RFF WA  Q +Y H   A++ +
Sbjct: 3   SSSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTV 62

Query: 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK--------- 172
           ID L+    K +Q++L+  ++  MK  +K  V V+   +I+++Y    KV+         
Sbjct: 63  IDSLA----KIRQYQLMWDVVKVMK--SKRMVNVETFCIIMRKYARAQKVEEAVYTFNIM 116

Query: 173 ----TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----------- 217
                 P + A N LL ALCK   V  A+ I   +K++  P++ TY+IL           
Sbjct: 117 DKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLP 176

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              +   EM+  G  PD  TY   +D  CKA  V EA  +   M    ST+  PT   Y+
Sbjct: 177 KAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEM---DSTVCKPTPFIYS 233

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++      +R+E+  S    M N+G  PDV+ Y  ++   C A +++  Y+ L EM  K
Sbjct: 234 VLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCK 293

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P+  T+N  L  L      DEA R++ RMI+V C P   TY M+I M+ E  E   A
Sbjct: 294 GVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKV-CEPDADTYTMMIKMFCERDELKKA 352

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            + W  M  +     + T+ V+I+GL +   V +AC LLEE++ KG++
Sbjct: 353 LKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIR 400



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------ 217
           + E +    +P+I    +++D LCK G VD A  I   + + V KP    Y++L      
Sbjct: 182 FREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGI 241

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T  EM   G  PD   YN  I  FCKA  +     +   M  KG T   P 
Sbjct: 242 ENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVT---PN 298

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           ++T+ I++ +L+     +E + +   MI   C PD  TY  +++  C   ++++A K  +
Sbjct: 299 SRTFNIILSSLIGRGETDEAYRVFLRMIKV-CEPDADTYTMMIKMFCERDELKKALKVWK 357

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  K + P + T+   +  LC+  +  +A  L   MIE G  PS  T+  L  +  + G
Sbjct: 358 YMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEG 417

Query: 392 EPD 394
             D
Sbjct: 418 RED 420


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 205/402 (50%), Gaps = 35/402 (8%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E ALD  G+ ++ +    VL+RF+    +A+RFF WA  Q NY H   AY+ MI+ L+ 
Sbjct: 9   LETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLA- 67

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK-------------TQ 174
              K +Q+++V  +++ M+  NK  + V+   +I+++Y    KV+              +
Sbjct: 68  ---KIRQYQMVWDLVNAMR--NKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMK 122

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + A N LL ALCK   V  A+ I   +K++  P++ TY+IL              +  
Sbjct: 123 PNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIY 182

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EMI  G  PD  TY+  +D  CKA  V EA ++ + M         P++  Y++++   
Sbjct: 183 REMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNC---KPSSFIYSVLVHTY 239

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
              +R+E+  S    M  +G + DV+ Y  ++   C A K++  Y+ L++M  KG  P+ 
Sbjct: 240 GVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNS 299

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T N  +  L      DEA +++ RMI+V C P V +Y M+I M+    E D A + W  
Sbjct: 300 RTCNIIINSLIGRGETDEAFKIFRRMIKV-CEPDVDSYTMIIKMFCGRKELDMALKIWKY 358

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           M K+     + T+ V+I+GL       +AC LLEE++ KG++
Sbjct: 359 MKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIR 400



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 17/243 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------ 217
           Y E I     P+    ++++D LCK G VD A  I K +  N  KP++  Y++L      
Sbjct: 182 YREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGV 241

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T  EM + G   D   YN  I  FCKA  +     + + M  KG    +P 
Sbjct: 242 ENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGV---NPN 298

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           ++T  I+I +L+     +E F +   MI   C PDV +Y  +++  C   +++ A K  +
Sbjct: 299 SRTCNIIINSLIGRGETDEAFKIFRRMIKV-CEPDVDSYTMIIKMFCGRKELDMALKIWK 357

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  K + P + T++  +  LC   N  +A  L   MIE G  PS  T+  L  +  + G
Sbjct: 358 YMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEG 417

Query: 392 EPD 394
             D
Sbjct: 418 RKD 420


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 220/462 (47%), Gaps = 39/462 (8%)

Query: 42  DESSDSVSDVAKLYEAIID--NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
           + ++ +   V ++  AI D   S A  N+E AL +L  PL    V+ VL RF+   + ++
Sbjct: 153 EAAASNPEGVDRVCAAIADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSY 212

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
           RFF WA     + H  + Y  M+ IL  T+    QF  + +M+  M +   +   +D   
Sbjct: 213 RFFRWATVSGGFTHTTITYCKMLHILGKTR----QFESMVAMIQEMGKAGAL--SMDAFK 266

Query: 160 MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
           + +K +    ++K                 + + N LL AL K GL   A  +  ++  +
Sbjct: 267 VAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQ 326

Query: 207 VKPNANTYNILGM------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
             P+  +Y  L +            +   EM++ G  PD   +NT I+   + +   EA 
Sbjct: 327 YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAV 386

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            +FE M+ KG     P   TY ++I    +  +M+        M  + C PDV+TY  +L
Sbjct: 387 KMFELMKAKGP---PPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLL 443

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G   A +++     LEEM  KG PPD  TYN  +K+L +    D+A R+Y +MI+ G  
Sbjct: 444 VGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 503

Query: 375 PSVQTYNMLISMYFELGEPDGAF--ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           P++ TYNM++  YF +G+ + A     W EM +RG   DV++Y V I+G     + EEA 
Sbjct: 504 PTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAY 562

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             +EE++NKG+K P   ++ +    S  G    + +L+  ++
Sbjct: 563 KYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVK 604


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 38/425 (8%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V ++   + D  N + ++E +L++    ++T+ V  VL+R +     A RFF+WA     
Sbjct: 48  VNEISRILSDQRNPHHDLETSLNAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPG 107

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-- 168
           + H   +Y+++++IL +++    QF ++   L  M+ ++   +  +++ ++ + Y+    
Sbjct: 108 FEHSEESYHILVNILGTSR----QFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANL 163

Query: 169 -----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
                       +   +P ++ L+ LL  LCKC  V  A+    RVK+K +  A TY+IL
Sbjct: 164 PSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHKFEAKAKTYSIL 223

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         +  +EM   G A D   YN+ ++  CK   V EA  +F   R  GS
Sbjct: 224 VRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMF---REIGS 280

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P A +YAI I A  + + +   FS+L  M     +P+V TY  +++ +C  GKVE+
Sbjct: 281 HGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVED 340

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AY+ L EM  +G  PD  +YN  L   C++   + A +L   M++  C P   +YNML+ 
Sbjct: 341 AYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLK 400

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNKG 442
           +   +G  D A E W  M +RG    V TY VMI GL  C    K+EEAC   E ++++G
Sbjct: 401 LLVRVGRFDRATEIWESMGERGFYPSVSTYSVMIHGL--CKKKGKLEEACRYFETMIDEG 458

Query: 443 LKLPY 447
           +  PY
Sbjct: 459 IP-PY 462



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +A +  + M   G  P +   +  L VLC  K+   A + + R ++       +TY++L+
Sbjct: 166 DAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDR-VKHKFEAKAKTYSILV 224

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + ++GE   A + + EM  RGCA DV  Y  +++ L     V+EA  +  E+ + G++
Sbjct: 225 RGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVE 284

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
                +  ++       ++ ++  + D M+++
Sbjct: 285 PDACSYAIFIRAYCEANNIHSVFSVLDRMKRY 316


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 224/447 (50%), Gaps = 42/447 (9%)

Query: 30  IGKVPSLVCKVF-----DESSDSVSDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTD 82
           I +     CK F       SS+ V DVA + + I  +  S+    ++ ALD  G+ ++ +
Sbjct: 42  INRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQE 101

Query: 83  SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
            V  VL RF+    + +RFF W+  Q +Y H   AY++MI+    +  K +Q++L+  ++
Sbjct: 102 VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIE----STAKIRQYKLMWDLI 157

Query: 143 DYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-------------PEINALNLLLDALCK 189
           + M++  K  + V+   +++++Y    KV                P + A N LL ALCK
Sbjct: 158 NAMRK--KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK 215

Query: 190 CGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
              V  A+ + + ++++  P++ TY+IL              +   EMI  G  PD  TY
Sbjct: 216 SKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTY 275

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           +  +D  CKA  V EA  +   +R+   +I  PT   Y++++      +R+EE       
Sbjct: 276 SIMVDILCKAGRVDEALGI---VRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLE 332

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M  SG   DV+ +  ++   C A +++  Y+ L+EM +KG  P+  + N  L+ L +   
Sbjct: 333 MERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGE 392

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DEA  ++ +MI+V C P   TY M+I M+ E  E + A + W  M K+G    + T+ V
Sbjct: 393 KDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSV 451

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +I+GL +    ++AC LLEE++  G++
Sbjct: 452 LINGLCEERTTQKACVLLEEMIEMGIR 478



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 17/232 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------ 217
           + E I     P+I   ++++D LCK G VD A  I + +   + KP    Y++L      
Sbjct: 260 FREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGT 319

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T  EM + G   D   +N+ I  FCKA  +     + + M++KG T   P 
Sbjct: 320 ENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVT---PN 376

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           +K+  I++  L++    +E F +   MI   C PD  TY  V++  C   ++E A K  +
Sbjct: 377 SKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWK 435

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            M  KG  P + T++  +  LC+ +   +A  L   MIE+G  PS  T+  L
Sbjct: 436 YMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRL 487


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 228/452 (50%), Gaps = 38/452 (8%)

Query: 20  VIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAI--IDNSNAYDNMEKALDSLGV 77
           +IR  + QS +     L  +++  SS+ V DVA + + I  +  S+    ++ ALD  G+
Sbjct: 3   MIRILNRQSRLCSKSFLSARLYS-SSEQVRDVADVAKNISKVLMSSPQLVIDSALDQSGL 61

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRL 137
            ++ + V  VL RF+    +A+RFF W+  Q +Y H   AY++MI+    +  K +Q++L
Sbjct: 62  RVSPEVVEDVLYRFRNAGLLAYRFFQWSEKQRHYEHSVRAYHMMIE----STAKIRQYKL 117

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-------------PEINALNLLL 184
           +  +++ M +  K  + V+   +++++Y    KV                P + A N LL
Sbjct: 118 MWDLINAMMK--KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLL 175

Query: 185 DALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP 232
            ALCK   V  A+ I + ++++  P++ TY+IL              +   EM+  G  P
Sbjct: 176 SALCKSKNVRKAQEIFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLP 235

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  TY+  +D  CKA  V EA  +   +R+   +I  PT   Y++++       R+EE  
Sbjct: 236 DIVTYSIMVDILCKAGRVDEALGI---VRSMDPSICKPTTFIYSVLVHTYGTETRLEEAV 292

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
                M  SG   DV+ +  ++   C   +++  Y+ L+EM +KG  P+  + N  L+ L
Sbjct: 293 DTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHL 352

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
            D    DEA  ++ +MI+V C P   TY M+I M+ E  E + A + W  M K+G    +
Sbjct: 353 IDRGEKDEAFDVFRKMIKV-CEPDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSM 411

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            T+ V+I+GL +    ++AC LLEE++  G++
Sbjct: 412 HTFSVLINGLCEEPNTQKACVLLEEMIEMGIR 443



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 17/232 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------ 217
           + E +   + P+I   ++++D LCK G VD A  I + +   + KP    Y++L      
Sbjct: 225 FREMVDAGSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGT 284

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T  EM + G   D   +N+ I  FCK   +     + + M++KG T   P 
Sbjct: 285 ETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVT---PN 341

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           +K+  I++  L+     +E F +   MI   C PD  TY  +++  C   ++E A K  +
Sbjct: 342 SKSCNIILRHLIDRGEKDEAFDVFRKMIKV-CEPDADTYTMMIKMFCEKKEMETADKVWK 400

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            M  KG  P + T++  +  LC+  N  +A  L   MIE+G  PS  T+  L
Sbjct: 401 YMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEMGIRPSGATFGRL 452


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 219/462 (47%), Gaps = 39/462 (8%)

Query: 42  DESSDSVSDVAKLYEAIID--NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
           + ++ +   V ++  AI D   S A  N+E AL +L  PL    V+ VL RF+   + ++
Sbjct: 153 EAAASNPEGVDRVCAAIADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSY 212

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
           RFF WA     + H  + Y  M+ IL  T    +QF  + +M+  M +     + +D   
Sbjct: 213 RFFRWATVSGGFTHTTITYCKMLHILGKT----RQFESMVAMIQEMGKAGA--LSMDAFK 266

Query: 160 MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
           + +K +    ++K                 + + N LL AL K GL   A  +  ++  +
Sbjct: 267 VAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQ 326

Query: 207 VKPNANTYNILGM------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
             P+  +Y  L +            +   EM++ G  PD   +NT I+   + +   EA 
Sbjct: 327 YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAV 386

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            +FE M+ KG     P   TY ++I    +  +M+        M  + C PDV+TY  +L
Sbjct: 387 KMFELMKAKG---PPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLL 443

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G   A +++     LEEM  KG PPD  TYN  +K+L +    D+A R+Y +MI+ G  
Sbjct: 444 VGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLE 503

Query: 375 PSVQTYNMLISMYFELGEPDGAF--ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           P++ TYNM++  YF +G+ + A     W EM +RG   DV++Y V I+      + EEA 
Sbjct: 504 PTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAY 562

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             +EE++NKG+K P   ++ +    S  G    + +L+  ++
Sbjct: 563 KYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVK 604


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 207/431 (48%), Gaps = 37/431 (8%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           N+E AL +L  PL    V+ VL RF+   + ++RFF WA     + H  + Y  M+ IL 
Sbjct: 182 NLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLHILG 241

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT------------- 173
            T+    QF ++ +++  M +   +   +D   + +K +    ++K              
Sbjct: 242 KTR----QFEMMVAIIQEMGKVGAL--SMDAFKVAIKSFAAAGEIKNAVGVFELMKKNGF 295

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM------------QT 221
              + + N LL AL   GL   A  +  ++  +  P+  +Y  L +            + 
Sbjct: 296 DDGVESFNCLLVALANEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRV 355

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM++ G  PD   +NT I+   + +   EA  +FE M+ KG     P   TY ++I  
Sbjct: 356 WNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGP---PPNVWTYTMLIRD 412

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +M+        M  + C PDV+TY  +L G   A +++     LEEM  KG PPD
Sbjct: 413 HCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPD 472

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF--ET 399
             TYN  +K+L + K  D+A R+Y +MI+ G  P++ TYNM++  YF LG+ + A     
Sbjct: 473 ARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF-LGDRNYAMGCAV 531

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           W EM +RG   DV++Y V I+G     + EEA   +EE++NKG+  P   ++ +    S 
Sbjct: 532 WEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYNKFAADFSK 591

Query: 460 IGDLGAIHKLS 470
            G    +++L+
Sbjct: 592 AGKPDILYELA 602


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 224/447 (50%), Gaps = 42/447 (9%)

Query: 30  IGKVPSLVCKVF-----DESSDSVSDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTD 82
           I +     CK F       SS+ V DVA + + I  +  S+    ++ ALD  G+ ++ +
Sbjct: 6   INRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQE 65

Query: 83  SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
            V  VL RF+    + +RFF W+  Q +Y H   AY++MI+    +  K +Q++L+  ++
Sbjct: 66  VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIE----STAKIRQYKLMWDLI 121

Query: 143 DYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-------------PEINALNLLLDALCK 189
           + M++  K  + V+   +++++Y    KV                P + A N LL ALCK
Sbjct: 122 NAMRK--KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK 179

Query: 190 CGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
              V  A+ + + ++++  P++ TY+IL              +   EMI  G  PD  TY
Sbjct: 180 SKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTY 239

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           +  +D  CKA  V EA  +   +R+   +I  PT   Y++++      +R+EE       
Sbjct: 240 SIMVDILCKAGRVDEALGI---VRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLE 296

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M  SG   DV+ +  ++   C A +++  Y+ L+EM +KG  P+  + N  L+ L +   
Sbjct: 297 MERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGE 356

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DEA  ++ +MI+V C P   TY M+I M+ E  E + A + W  M K+G    + T+ V
Sbjct: 357 KDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSV 415

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +I+GL +    ++AC LLEE++  G++
Sbjct: 416 LINGLCEERTTQKACVLLEEMIEMGIR 442



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 17/232 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------ 217
           + E I     P+I   ++++D LCK G VD A  I + +   + KP    Y++L      
Sbjct: 224 FREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGT 283

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T  EM + G   D   +N+ I  FCKA  +     + + M++KG T   P 
Sbjct: 284 ENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVT---PN 340

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           +K+  I++  L++    +E F +   MI   C PD  TY  V++  C   ++E A K  +
Sbjct: 341 SKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWK 399

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            M  KG  P + T++  +  LC+ +   +A  L   MIE+G  PS  T+  L
Sbjct: 400 YMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRL 451


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 200/402 (49%), Gaps = 35/402 (8%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +  ALD  G+ ++ + V  VL+RF+    +A+RFF WA  Q +Y H   AY+ MI+ L+ 
Sbjct: 9   LHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLA- 67

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK-------------TQ 174
              K +Q++++  +++ MKR  K  + V+   +I+++Y    K++               
Sbjct: 68  ---KIRQYQIMWDLINAMKR--KRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVP 122

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + A N L  ALCK   V  A+ I    K++  P++ TY IL              +  
Sbjct: 123 PNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIF 182

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM+ +G +PD  TY   +D  CKA  V EA D+ + M     TI  PT+  Y+++I   
Sbjct: 183 REMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDL---TICKPTSFIYSVLIHTY 239

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
              +R+E+       M  +G   DV+ Y  ++   C   K +  Y+ L EM  KG  P+ 
Sbjct: 240 GIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNS 299

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T N  L  L      DEA R++ RMI+V C P   TY M+I M+ E  E + A + W  
Sbjct: 300 RTLNIILNNLIARGETDEAFRVFRRMIKV-CEPDADTYTMMIKMFCERNELEMALKVWKY 358

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           M K+     + T+ V+I+GL +   V  AC +LE+++ KG++
Sbjct: 359 MKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIR 400



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 17/243 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------ 217
           + E + V   P+I    +++D LCK G VD A  I K +   + KP +  Y++L      
Sbjct: 182 FREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGI 241

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T   M + G   D   YN  I  FCK         +   M  KG     P 
Sbjct: 242 ENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGM---QPN 298

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           ++T  I++  L+     +E F +   MI   C PD  TY  +++  C   ++E A K  +
Sbjct: 299 SRTLNIILNNLIARGETDEAFRVFRRMIKV-CEPDADTYTMMIKMFCERNELEMALKVWK 357

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  K + P + T++  +  LC+  +   A  +   MIE G  PS  T+  L  +  + G
Sbjct: 358 YMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEG 417

Query: 392 EPD 394
             D
Sbjct: 418 RED 420


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 214/439 (48%), Gaps = 41/439 (9%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH----QDNYAHEPLAYNLMI 122
           ++E AL +L  PL+   V+ VL RF+   + + RFF WA         +AH  + Y  M+
Sbjct: 169 SLEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMV 228

Query: 123 DILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT--------- 173
            IL     KA+QF+ + +++  M +   + +  D   + +K +    ++K          
Sbjct: 229 HILG----KARQFQSMVALIQEMGKEGALCM--DAFKIAIKSFAAAGEIKNAVGVFEMMR 282

Query: 174 ----QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM---------- 219
                  + + N LL AL + GL   A  +  R++++  P+  +Y  L +          
Sbjct: 283 THGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVE 342

Query: 220 --QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +   EM++ G  PD   +NT I+   + +   EA  +FE M+ KG    +P   TY +
Sbjct: 343 AGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP---APNVWTYTM 399

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I    +  +M+        M + GC PDV+TY  +L G   A +++     LEEM  KG
Sbjct: 400 LIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKG 459

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD--G 395
            PPD  TYN  +K+L +    D+A R+Y +MI+ G  P++ TYNM++  YF LG  +   
Sbjct: 460 CPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF-LGGRNYMM 518

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
               W EM ++G   DV++Y V I+G     + EEAC  +EE++ KG+K P   ++ +  
Sbjct: 519 GCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAA 578

Query: 456 QLSVIGDLGAIHKLSDHMR 474
             S  G    +++L+  ++
Sbjct: 579 DFSKAGKPDILYELAQKVK 597


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 206/423 (48%), Gaps = 41/423 (9%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH----QDNYAHEPLAYNLMI 122
           ++E AL +L  PL+   V+ VL RF+   + + RFF WA         +AH  + Y  M+
Sbjct: 169 SLEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMV 228

Query: 123 DILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT--------- 173
            IL     KA+QF+ + +++  M +   + +  D   + +K +    ++K          
Sbjct: 229 HILG----KARQFQSMVALIQEMGKEGALCM--DAFKIAIKSFAAAGEIKNAVGVFEMMR 282

Query: 174 ----QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM---------- 219
                  + + N LL AL + GL   A  +  R++++  P+  +Y  L +          
Sbjct: 283 THGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVE 342

Query: 220 --QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +   EM++ G  PD   +NT I+   + +   EA  +FE M+ KG    +P   TY +
Sbjct: 343 AGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP---APNVWTYTM 399

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I    +  +M+        M + GC PDV+TY  +L G   A +++     LEEM  KG
Sbjct: 400 LIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKG 459

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD--G 395
            PPD  TYN  +K+L +    D+A R+Y +MI+ G  P++ TYNM++  YF LG  +   
Sbjct: 460 CPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF-LGGRNYMM 518

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
               W EM ++G   DV++Y V I+G     + EEAC  +EE++ KG+K P   ++ +  
Sbjct: 519 GCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAA 578

Query: 456 QLS 458
             S
Sbjct: 579 DFS 581


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 215/432 (49%), Gaps = 41/432 (9%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           S D V++++++   + D+ N + ++E +L +    ++T  V  VL+R +     A RFF+
Sbjct: 40  SPDLVNEISRI---LSDHRNPHHDLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQRFFL 96

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
           WA     + H   +Y++++DIL S+K    QF L+   L  ++ +    +   V  ++ +
Sbjct: 97  WAKRIPGFDHSKESYHILVDILGSSK----QFALLWDFLIEIRESQDFEISPQVFWLVFR 152

Query: 164 QYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
            Y+               ++   +P I+ L+ LL  LCK     +A+ I  RVK++ +  
Sbjct: 153 AYSRANLPSDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKHQFQTR 212

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
           A TY+IL              +  +EM +   A D   YN+ ++ FCK   V+EA  +F 
Sbjct: 213 AKTYSILVRGWGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMF- 271

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
             R  GS    P A T++I I A  + + +   + +L  M     +P+V TY  +++ +C
Sbjct: 272 --REMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLC 329

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
              KVEEAY+ L E+  +   PD  +YN  L   C++   + A RL  RM++  C P   
Sbjct: 330 KKEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKH 389

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLL 435
           +YNML+ +   +G  D A E W  M ++G    V TY VM+ GL  C    K+EEAC   
Sbjct: 390 SYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGL--CKKKGKLEEACKYF 447

Query: 436 EEVVNKGLKLPY 447
           E ++++G+  PY
Sbjct: 448 EMMIDEGIP-PY 458



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 1/164 (0%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V      A    +A +  + M   G  P I   +  L VLC  K+   A +++ R ++  
Sbjct: 150 VFRAYSRANLPSDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDR-VKHQ 208

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
                +TY++L+  + ++GE   A + + EM ++ CA DV  Y  +++      KV EA 
Sbjct: 209 FQTRAKTYSILVRGWGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAY 268

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +  E+ + G+K     F  ++       D+   +++ D M+++
Sbjct: 269 KMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRY 312


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 203/429 (47%), Gaps = 43/429 (10%)

Query: 50  DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD 109
           D   + + ++ + N +  ME +L   G+ L+T  V   L R +   KIA  FF+WA  Q 
Sbjct: 52  DADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKDQA 111

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN--------KVFVPVDVLLMI 161
           +++H+ ++YNL+IDIL+    K +QF +    +  M +N+        ++ +   V   +
Sbjct: 112 HHSHDVVSYNLIIDILA----KVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGL 167

Query: 162 LKQYTEKIK-----VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
            +Q           V+   + +    LLD L K G V  A  I  + K K + NA  Y I
Sbjct: 168 TRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTI 227

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK----------ARMVTEAA 254
           L              + L EM++ G   +  TYN  ++  C+           R + +A 
Sbjct: 228 LIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAE 287

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            + + MR KG     P   +Y+I+I    +  + E     L  M + G  P V+TY  V+
Sbjct: 288 KVLDEMRQKGI---EPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVV 344

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGC 373
           + +C  G++E+A + + +M   G  P   TYNCF K     K+ D ALRLY +M  E  C
Sbjct: 345 KCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSC 404

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P + TYN+L+ M+ +L   +   E W +M   G   D+D+Y ++I GL +  K +EAC 
Sbjct: 405 LPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACH 464

Query: 434 LLEEVVNKG 442
              E++ KG
Sbjct: 465 FFVEMIEKG 473



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 26/179 (14%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           P +     ++  LC CG L D  E +   VK+ V P+A TYN    +             
Sbjct: 335 PTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKE------------- 381

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              Y    D+         A  L+  M+ + S +  P   TY I++   V+ +RME    
Sbjct: 382 ---YRGRKDS-------DNALRLYRKMKEEYSCL--PDMHTYNILVGMFVKLNRMEIVQE 429

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           +   M  SG  PD+ +Y  ++ G+C   K +EA  F  EM  KGY P  +T+    + L
Sbjct: 430 IWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGL 488



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 67/294 (22%)

Query: 176 EINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTL 222
           ++ + NL++D L K    D A + I +  +N ++P + T+ IL             ++  
Sbjct: 116 DVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAF 175

Query: 223 EEM---IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           ++M   ++     D+F Y   +DT  K   V  A+ +F   + K        AK Y I+I
Sbjct: 176 DDMSCFVEKDADSDDFCY--LLDTLSKYGYVKLASQIFNQRKFKFEA----NAKMYTILI 229

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                                               G C   +V  A + L EM  +G  
Sbjct: 230 Y-----------------------------------GWCKINRVSIAERLLGEMVERGIE 254

Query: 340 PDIVTYNCFLKVLCDN----------KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++VTYN  L  +C            +   +A ++   M + G  P V +Y+++I +Y  
Sbjct: 255 ANVVTYNVLLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSR 314

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +P+   +    M  +G    V TY  ++  L  C ++E+A  L+ ++V  G+
Sbjct: 315 AHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGV 368


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 203/421 (48%), Gaps = 32/421 (7%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
            SDV K+Y  +    +    +E AL   GV L       VL R      +A++FF+WA  
Sbjct: 48  ASDVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVWASK 107

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT- 166
           Q  Y H    Y  MI +LS    K KQF  V ++L+ M+R+N V +  +V +++++++  
Sbjct: 108 QPCYRHCYENYKAMIKVLS----KMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFAS 163

Query: 167 ------------EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
                       E  K   +P+      LLDALCK G V  A ++ + ++ +  P+   +
Sbjct: 164 SRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFSPSLKHF 223

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
             L                L +M + G  PD   YN  +  +  A  + +A DL + +R 
Sbjct: 224 TCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRR 283

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           KG     P A +Y I+I AL   ++M+E   +   M  SGC  DV TY  ++ G C    
Sbjct: 284 KGC---DPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRM 340

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++ Y+ L+ M  KG+ P+ +TY   +      +  +E   L G M ++GC P +  YN+
Sbjct: 341 IDKGYQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNV 400

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I +  +LGE +   + W+EM+  G +  +DT+ +MI+G      + EAC   +E+V +G
Sbjct: 401 VIRLACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERG 460

Query: 443 L 443
           L
Sbjct: 461 L 461


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 211/432 (48%), Gaps = 41/432 (9%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           SS  +++++++   + D  + + ++E+ L +    +T   V  VL+R +     A RFF+
Sbjct: 46  SSQYINEISRI---LSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSAHRFFL 102

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
           WA     + H   +Y++++DIL S+    KQF L+   L  M+      +  ++  +I +
Sbjct: 103 WAKRLPGFEHSKESYHILVDILGSS----KQFPLIWDFLSDMRETRCCEICPEIFWLIFR 158

Query: 164 QY------TEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
            Y       + I+   Q         +  ++ LL  LCK   V  A+    +V  +V PN
Sbjct: 159 AYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPN 218

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
           A TY+IL              +  EEM + G A D   YN+ ++  CK   V EA  LF 
Sbjct: 219 AKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLF- 277

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
             R  GS   +P A +Y+I I A  + + +   F +L  M     +P+V TY  +++ +C
Sbjct: 278 --REMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLC 335

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            + KV+EAY+ L+EM  +G  PD+ +YN      CD+   ++ALRL  RM +  C P   
Sbjct: 336 KSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRH 395

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLL 435
           TYNM++ M   +G  D   + W  M++RG      TY VM+ G   C    K+EEAC   
Sbjct: 396 TYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGF--CKKKGKLEEACKYF 453

Query: 436 EEVVNKGLKLPY 447
           E +++ G+  PY
Sbjct: 454 EMMIDDGIP-PY 464



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL---PDVSTYKEVLEGMCLAGKVEEAY 327
           + ++Y I++  L  + +    +  L  M  + C    P++  +  +    C A    +A 
Sbjct: 113 SKESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEI--FWLIFRAYCRANLPGDAI 170

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +   +MG+ G    +   +  L VLC  K+  +A   + + + V   P+ +TY++L+  +
Sbjct: 171 RAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDK-VNVEVMPNAKTYSILMRGW 229

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            ++G+   A + + EM +RGCA DV  Y  +++ L     V+EA  L  E+ + GL    
Sbjct: 230 GDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDA 289

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
             +  ++     + D+ +  ++ D MR++
Sbjct: 290 CSYSIFIRAYCEVNDIHSAFQVLDRMRRY 318


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 203/402 (50%), Gaps = 35/402 (8%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           ++ +L   G+ ++   V  VL+RF+    +A++FF WAG Q NY H   AY+ MI+ L+ 
Sbjct: 30  LDTSLSESGIRVSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYTHSIRAYHTMIESLA- 88

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK-------------TQ 174
              K +Q++++  +++ M R+ K+ + V+   +I+++Y    KVK               
Sbjct: 89  ---KIRQYQIMWDLVNKM-RSLKI-LNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVP 143

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + A N LL ALCK   V  A+ I   +K++  P++ TY+IL              +  
Sbjct: 144 PNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIF 203

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM+ MG  PD  TY   +D  CKA  V EA  + + M    S++  PT+  Y++++   
Sbjct: 204 REMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEM---DSSVCKPTSFIYSVLVHTY 260

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
              +R+E+       M  +    DV+ Y  ++   C   K++ AY+ L EM  KG  P+ 
Sbjct: 261 GIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNS 320

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T N  L  L    + DEA R++ RMI+V C P   TY M+I M+ E  + + A + W  
Sbjct: 321 RTCNIILNSLISCGDTDEAFRVFRRMIKV-CDPDADTYTMMIKMFCENDKLEMALKVWKY 379

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           M  +     + T+ V+I+GL       +AC LLEE++ KG++
Sbjct: 380 MRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIR 421


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/429 (28%), Positives = 202/429 (47%), Gaps = 43/429 (10%)

Query: 50  DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD 109
           D   + + ++ + N +  ME +L   G+ L+T  V   L R +   KIA  FF+WA  Q 
Sbjct: 52  DADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKDQA 111

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN--------KVFVPVDVLLMI 161
           +++H+ ++YNL+IDIL+    K +QF +    +  M +N+        ++ +   V   +
Sbjct: 112 HHSHDVVSYNLIIDILA----KVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGL 167

Query: 162 LKQYTEKIK-----VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
            +Q           V+   + +    LLD L K G V  A  I  + K K + NA  Y I
Sbjct: 168 TRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTI 227

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA----------RMVTEAA 254
           L              + L EM++ G   +  TYN  ++  C+           R + +A 
Sbjct: 228 LIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDAE 287

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            + + MR  G     P   +Y+I+I    +  + E     L  M + G  P V+TY  V+
Sbjct: 288 KVLDEMRQXGI---EPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVV 344

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGC 373
           + +C  G++E+A + + +M   G  P   TYNCF K     K+ D ALRLY +M  E  C
Sbjct: 345 KCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSC 404

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P + TYN+L+ M+ +L   +   E W +M   G   D+D+Y ++I GL +  K +EAC 
Sbjct: 405 LPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACH 464

Query: 434 LLEEVVNKG 442
              E++ KG
Sbjct: 465 FFVEMIEKG 473



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 26/179 (14%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           P +     ++  LC CG L D  E +   VK+ V P+A TYN    +             
Sbjct: 335 PTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKE------------- 381

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              Y    D+         A  L+  M+ + S +  P   TY I++   V+ +RME    
Sbjct: 382 ---YRGRKDS-------DNALRLYRKMKEEYSCL--PDMHTYNILVGMFVKLNRMEIVQE 429

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           +   M  SG  PD+ +Y  ++ G+C   K +EA  F  EM  KGY P  +T+    + L
Sbjct: 430 IWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGL 488



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 67/294 (22%)

Query: 176 EINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTL 222
           ++ + NL++D L K    D A + I +  +N ++P + T+ IL             ++  
Sbjct: 116 DVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAF 175

Query: 223 EEM---IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           ++M   ++     D+F Y   +DT  K   V  A+ +F   + K        AK Y I+I
Sbjct: 176 DDMSCFVEKDADSDDFCY--LLDTLSKYGYVKLASQIFNQRKFKFEA----NAKMYTILI 229

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                                               G C   +V  A + L EM  +G  
Sbjct: 230 Y-----------------------------------GWCKINRVSIAERLLGEMVERGJX 254

Query: 340 PDIVTYNCFLKVLCD----------NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++VTYN  L  +C            +   +A ++   M + G  P V +Y+++I +Y  
Sbjct: 255 ANVVTYNVLLNGICRXASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSR 314

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +P+   +    M  +G    V TY  ++  L  C ++E+A  L+ ++V  G+
Sbjct: 315 AHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGV 368


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 214/464 (46%), Gaps = 73/464 (15%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +ID   A D NME  LD   V L+   VVGVL+RF+   K AFRFF WAG +  + H   
Sbjct: 166 VIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSR 225

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN----KVFVPVDVLLMILKQYTEKIKV- 171
            YN M+ +L  T+    QF  +  ML  M        + F          K+  + + V 
Sbjct: 226 TYNAMMSVLGRTR----QFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVF 281

Query: 172 ------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
                      ++ +N LLD L +  L   A+ + ++++++  PN  TY +L        
Sbjct: 282 ELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIK 341

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +T  EMI  G  PD   ++T ++   K +  ++A  LFE M+ KG    SP  +
Sbjct: 342 NLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGP---SPNVR 398

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I+I  L +  +M+E       M++SGC PD + Y  ++ G     K+++ Y  L+EM
Sbjct: 399 TYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 458

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG P D  TYN  +K++ + +  D+A+R+Y +MI+ G   ++ TYNM++  YF     
Sbjct: 459 KEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYF----- 513

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
              +   +EM   GCA                           E++ KG+K P   ++ +
Sbjct: 514 ---YTRNYEM---GCA---------------------------EMIEKGMKAPQLDYNKF 540

Query: 454 LMQLSVIGDLGAIHKLSDHMR---KF-YNPVIARRLALNQKRVR 493
               S  G    + +L+  M+   KF  + V AR   + +KRV+
Sbjct: 541 AADFSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVK 584


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 205/428 (47%), Gaps = 33/428 (7%)

Query: 42  DESSDS-VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           D + D   SDV K+Y  +    +    +E AL   GV +       VL R      +A+R
Sbjct: 82  DHTHDEFASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYR 141

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           F+ WA  Q  +  +  AY  MI +LS    + +QF  V ++++ M++ N   +   V ++
Sbjct: 142 FYSWASKQSGHRLDHDAYKAMIKVLS----RMRQFGAVWALIEEMRQENPHLITPQVFVI 197

Query: 161 ILKQYT-------------EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           +++++              E  K   +P+      LLDALCK G V  A ++ + ++ + 
Sbjct: 198 LMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYRW 257

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           KP+   +  L                L +M  MG  PD   YN  +  + +A  + +A D
Sbjct: 258 KPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYD 317

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L + MR K      P A +Y ++I +L +++R+EE   L   M  +GC  DV TY  ++ 
Sbjct: 318 LLKEMRRKRC---EPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLIS 374

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G C  GK++  Y+ L+EM  +G+ P+ V Y   +      +  +E   L   M ++GC P
Sbjct: 375 GFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAP 434

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            +  YN +I +  +LGE     + W+EM+  G +  +DT+ +MI+G  +   + EAC   
Sbjct: 435 DLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYF 494

Query: 436 EEVVNKGL 443
           +E+V +GL
Sbjct: 495 KEMVGRGL 502


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 214/459 (46%), Gaps = 46/459 (10%)

Query: 19  RVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVP 78
           R +  + L S +G   +LV        D+     +L++ II    A   +E  LD  GV 
Sbjct: 12  RKVFVRMLSSGVGGGDALV--------DTADPAKRLFKLIISCRKA-SAVEHELDHSGVR 62

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD--NYAHEPLAYNLMIDILSSTKYKAKQFR 136
           +T D    VL+R      +A+RFF WA  Q     AH   +Y+ ++  L+    K +Q++
Sbjct: 63  VTPDVAERVLERLDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASLA----KIRQYQ 118

Query: 137 LVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-------------PEINALNLL 183
           L+  ++  M+R   V   V+   +I+++Y    KV                P + A N L
Sbjct: 119 LMWDVVAVMRREGAV--NVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSL 176

Query: 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHA 231
           L ALCK   V  A+ I  ++ ++  P+A TY+IL              +   EM+  G  
Sbjct: 177 LGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCE 236

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  TY   +D+ CK   V EA  + + M ++G     PT   Y++++       R+E+ 
Sbjct: 237 PDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGC---QPTTYIYSVLVHTYGVEMRIEDA 293

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            +    M   G +PD+  Y  ++   C A K E A++ L +M   G   +  T+N  L  
Sbjct: 294 VATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNH 353

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           L      DEA +++ RMI+  C P   TY M+I M+ E  + + A + W  M  +     
Sbjct: 354 LISLGRDDEAYKVFRRMIKC-CQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPS 412

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           + T+ V+I+GL D  +V +AC LLE+++ KG++ P   F
Sbjct: 413 MHTFSVLINGLCDKREVSQACVLLEDMIEKGIRPPGSTF 451



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 17/243 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y+E +    +P+I    +++D+LCK G V+ A  + + + ++  +P    Y++L      
Sbjct: 227 YSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGV 286

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T  +M + G  PD   YN  +  FCKA+    A  +   M   G T +S  
Sbjct: 287 EMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNS-- 344

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            +T+ I++  L+   R +E + +   MI   C PD  TY  +++  C   KVE A K  +
Sbjct: 345 -RTWNIILNHLISLGRDDEAYKVFRRMIKC-CQPDCDTYTMMIKMFCENDKVEMALKVWK 402

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  K + P + T++  +  LCD +   +A  L   MIE G  P   T+  L  +  + G
Sbjct: 403 YMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEG 462

Query: 392 EPD 394
             D
Sbjct: 463 RKD 465


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 198/430 (46%), Gaps = 33/430 (7%)

Query: 40  VFDESSDSVS-DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
            +D++ D  S DV K+Y  +    +    +E AL   GV + +     VL R      + 
Sbjct: 46  TYDQNYDEFSADVEKVYRILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLG 105

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
           +RFF+WA  Q  Y H    Y  MI IL     K +QF  V ++++ M+R N  FV   V 
Sbjct: 106 YRFFVWASKQPGYRHSYEVYKAMIKILG----KMRQFGAVWALIEEMRRENPQFVSPYVF 161

Query: 159 LMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKN 205
           +++++++     VK              +P+ +    LLDALCK G V  A ++ + ++ 
Sbjct: 162 VVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRI 221

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           +  P    +  L                L ++ + G  PD   YN  +  +  A  + +A
Sbjct: 222 RFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDA 281

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
            DL + MR K      P   ++  +I AL    +MEE   +   M + GC  D  TY  +
Sbjct: 282 YDLLKEMRRKEC---EPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTL 338

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C  GK+ + Y+ L+ M  +G+ P+ +TY   +      +  +E + L   M ++GC
Sbjct: 339 ISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGC 398

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P +  YN++I +  +LGE       W+EM+  G +  +DT+ +MI G      + EAC 
Sbjct: 399 TPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACE 458

Query: 434 LLEEVVNKGL 443
             +E+V +GL
Sbjct: 459 FFKEMVGRGL 468



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 3/247 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+      Y   I    K R       L E MR +     SP    + +++       
Sbjct: 115 QPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPY--VFVVLMRRFASAR 172

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +++   +L  M   GC PD   +  +L+ +C  G V+EA    E+M  + + P +  + 
Sbjct: 173 MVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIR-FTPTLKHFT 231

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C      EA  +  ++ E G  P +  YN L++ Y   G+   A++   EM ++
Sbjct: 232 SLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRK 291

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
            C  +V ++  +I  L    K+EEA  +  E+ + G       + + +      G +   
Sbjct: 292 ECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKG 351

Query: 467 HKLSDHM 473
           ++L D+M
Sbjct: 352 YELLDNM 358



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 18/217 (8%)

Query: 183 LLDALCKCGLVDYA-ETICKRVKNKVKPNANTY-NILG-----------MQTLEEMIQMG 229
           L+   CK G +    E +   ++    PN  TY +I+            ++ +EEM ++G
Sbjct: 338 LISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG 397

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD   YN  I   CK   + E   ++  M   G    SP   T+ IMI   +    + 
Sbjct: 398 CTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGL---SPGLDTFVIMIHGFLSQRCLV 454

Query: 290 ECFSLLGHMINSGCL--PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           E       M+  G L  P   T KE+L  +  A K+E +      +  KG   ++  +  
Sbjct: 455 EACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTI 514

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           ++  L  N +  EA      M++ G  P   T+  L+
Sbjct: 515 WIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLM 551


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 201/431 (46%), Gaps = 36/431 (8%)

Query: 42  DESSDSV----SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI 97
           D SS  V     DV K+Y  + +  +    +E AL   GV +       VL R      +
Sbjct: 63  DNSSSKVDEFAKDVEKVYRILRNFHSRVPKLELALQESGVTMRAGLTERVLNRCGDAGNL 122

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
            +RFF+WA  Q  Y H    Y  M+ I S    K +QF  V ++L+ M+++N V +  ++
Sbjct: 123 GYRFFVWASKQPGYRHSYENYKAMVKIFS----KMRQFGAVWALLEEMRKDNSVLITSEL 178

Query: 158 LLMILKQYT-------------EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
            +++++++              E  K   +P+      LLDALCK G V  A ++ + ++
Sbjct: 179 FIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMR 238

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            +  P+   +  L                L +M + G  PD   +N  +  +  A  +T+
Sbjct: 239 VRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTD 298

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A DL + M  KG     P A +Y IMI A    ++M+E   +   M  +GC  DV TY  
Sbjct: 299 AFDLLKEMVRKGC---EPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTA 355

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++ G C  GK+   Y+ L+ M  KG+ P+ +TY   L      +  +E L L   M  VG
Sbjct: 356 LISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMRMVG 415

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C P +  YN++I +  +LGE     + W+EM+    + ++DT+ +MI G      + EAC
Sbjct: 416 CVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGCLVEAC 475

Query: 433 FLLEEVVNKGL 443
              +E++ +GL
Sbjct: 476 EYFKEMIGRGL 486



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 3/249 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+      Y   +  F K R       L E MR   S +   T++ + ++I       
Sbjct: 133 QPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVL--ITSELFIVLIRRFASAR 190

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +E+   +L  M   GC PD   +  +L+ +C  G V++A    E+M  + + P +  + 
Sbjct: 191 LVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMRVR-FSPSLRHFT 249

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C      EA  +  +M E G  P +  +N L+S Y   G+   AF+   EM ++
Sbjct: 250 SLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRK 309

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  + ++Y +MI       K++EA  +  E+   G +     + + +      G +   
Sbjct: 310 GCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRG 369

Query: 467 HKLSDHMRK 475
           +++ D M++
Sbjct: 370 YQILDAMKQ 378


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 41/430 (9%)

Query: 46  DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA 105
           D V+++++L   + D+   + ++E +L+     L+T+ V  VL+R +     A RFF+WA
Sbjct: 45  DLVNEISRL---LSDHRYPHHDLELSLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWA 101

Query: 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165
                + H  ++++++++IL S     KQF ++   L  M+ ++   +  ++  +I + Y
Sbjct: 102 KSIPGFQHSVMSFHILVEILGS----CKQFAILWDFLTEMRESHHYEINSEIFWLIFRAY 157

Query: 166 TEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN 212
           ++               +   +P I+ L+ LL  LCK   V  A+ +  + KN+    A 
Sbjct: 158 SQANLPDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAK 217

Query: 213 TYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           TY+IL                 + M++ G   D   YN  +   CK   V EA ++F  M
Sbjct: 218 TYSILISGWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDM 277

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
            +K      P A TY+I I +    D ++  F +L  M     LP+V TY  +++ +C  
Sbjct: 278 LSKRV---EPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKN 334

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
             VEEAY+ L+EM ++G  PD  +YN      CD+   + ALRL  RM +  C P   TY
Sbjct: 335 EHVEEAYQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTY 394

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEE 437
           NM++ +   +G  D   E W  M  +     V TY VMI G   C    K+EEAC   E 
Sbjct: 395 NMVLKLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGF--CKKKGKLEEACKYFEM 452

Query: 438 VVNKGLKLPY 447
           ++++G+  PY
Sbjct: 453 MIDEGIP-PY 461



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 74/151 (49%), Gaps = 1/151 (0%)

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +    M   G  P I   +  L +LC  K+  +A +L+ +        + +TY++LIS
Sbjct: 166 AIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSL-TAKTYSILIS 224

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            + E+G+ + A + +  M ++GC  D+  Y  ++  L    +V+EA  +  ++++K ++ 
Sbjct: 225 GWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEP 284

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
               +  ++       D+ +  ++ D MR++
Sbjct: 285 DAFTYSIFIHSYCDADDVQSAFRVLDKMRRY 315


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 196/416 (47%), Gaps = 36/416 (8%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
            ++ AL+  GV ++ D V  VL+RF+     AFRFF WA  Q  Y+H   AY+LMI+ L+
Sbjct: 30  GLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLA 89

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ------------ 174
               K +Q+++V  ++  M++  K  + V+   +++++Y    KV               
Sbjct: 90  ----KIRQYQIVWDLVSAMRK--KGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDV 143

Query: 175 -PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
            P + A N LL ALCK   V  A+ I   +K +  P+  +Y+IL              + 
Sbjct: 144 VPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREV 203

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM++ G  PD  TY   +D  CKA  V EA ++ + M         PT+  Y++++  
Sbjct: 204 FREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGN---CRPTSFIYSVLVHT 260

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                R+E+       M   G   DV  Y  ++   C   K +  ++ L+EM + G  P+
Sbjct: 261 YGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPN 320

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T N  +  +      D A R++ RMI++ C P   TY M+I M+ E  E + A + W 
Sbjct: 321 SRTCNVIISSMIGQGQTDRAFRVFCRMIKL-CEPDADTYTMMIKMFCEKNELEMALKIWK 379

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M  +     + T+  +I GL +     +AC ++EE++ KG++ P R     L QL
Sbjct: 380 YMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIR-PSRITFGRLRQL 434



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------ 217
           + E ++    P++    +++D LCK G VD A  + K +     +P +  Y++L      
Sbjct: 204 FREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGV 263

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + T  EM + G   D   YN  I  FCK         + + M + G    +P 
Sbjct: 264 EHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGV---APN 320

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           ++T  ++I +++   + +  F +   MI   C PD  TY  +++  C   ++E A K  +
Sbjct: 321 SRTCNVIISSMIGQGQTDRAFRVFCRMIKL-CEPDADTYTMMIKMFCEKNELEMALKIWK 379

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M +K + P + T++  +K LC+  N  +A  +   MIE G  PS  T+  L  +  + G
Sbjct: 380 YMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLLIKEG 439

Query: 392 EPD 394
             D
Sbjct: 440 RED 442



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 119/280 (42%), Gaps = 12/280 (4%)

Query: 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           D  E + KR +N   P    +     +  E+  Q G++     Y+  I++  K R     
Sbjct: 45  DLVENVLKRFENAGMPAFRFF-----EWAEK--QRGYSHSIRAYHLMIESLAKIRQYQIV 97

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
            DL   MR KG        +T+ IM+    + ++++E       M     +P+++ +  +
Sbjct: 98  WDLVSAMRKKGML----NVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGL 153

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           L  +C +  V +A +  + M  + + PD  +Y+  L+      N   A  ++  M+E GC
Sbjct: 154 LSALCKSNNVRKAQEIFDAMKGQ-FVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGC 212

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P V TY +++ +  + G  D A E   EMD   C      Y V++       ++E+A  
Sbjct: 213 DPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAID 272

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              E+  KG+K     +++ +     +     +H++   M
Sbjct: 273 TFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEM 312


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 225/474 (47%), Gaps = 43/474 (9%)

Query: 34  PSLVCKVFDESSDSVSDVAKLYEAIIDNSNA-YDNMEKALDSLGVPLTTDSVVGVLQRFQ 92
           P L  K   E S  + DV K+   + +  ++ +D++ +ALD  G  ++   V+ VL+RF 
Sbjct: 129 PKLFAKPSLEESIHLEDVEKISTFLKEQRHSSHDHVVQALDGSGFRVSNSLVMQVLKRFG 188

Query: 93  FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF 152
            +   A+ FF+WA  Q  Y H P  YNLM+DIL     KAK+F L+  ++  MKR    +
Sbjct: 189 NDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILG----KAKEFDLMWKLVKEMKRIEG-Y 243

Query: 153 VPVDVLLMILKQYTEKI-------------KVKTQPEINALNLLLDALCKCGLVDYAETI 199
           V +D +  +++++ +               K   + +  ALN LLDAL K   ++ A  +
Sbjct: 244 VCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHNV 303

Query: 200 CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
               K+ V  ++ ++NIL              + +EE  + G  PD FTYN  I+++C  
Sbjct: 304 LDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHD 363

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           +   +  ++ E MR  G     P A TY I+++   +  ++ +       M   G +PD 
Sbjct: 364 KDFRKVDEVLEEMRGNGC---PPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDT 420

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
             Y  ++  +  AG++++A +  ++M  +G   D+VTYN  +   C +   + ALRL   
Sbjct: 421 PFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKE 480

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M E  C P +QTY+ L+ M  +             M K     D  TY +++  L +  K
Sbjct: 481 MEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGK 540

Query: 428 VEEACFLLEEVVNKG-------LKLPYRKFD--SYLMQLSVIGDLGAIHKLSDH 472
           + EAC   EE+V+KG       +KL  RK +  S L +   I +L A H L + 
Sbjct: 541 LVEACTFFEEMVSKGFTPMETTVKLLTRKLEIKSMLKEKDQIEELMAGHVLGEQ 594


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 231/477 (48%), Gaps = 38/477 (7%)

Query: 29  YIGKVP-SLVCKVF-DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVG 86
           YI K P SL+  +F   +  S++D  ++   II +S++  N++++L S G+ L+ D +  
Sbjct: 14  YISKTPISLLANLFFSTNPTSLNDDVEVVYRIITSSSSVQNLKQSLTSTGIFLSNDLIDK 73

Query: 87  VLQRFQFEEK---IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLD 143
           VL+R +F       A  FF +  ++  + H P + + ++ IL     ++++F  +  +L 
Sbjct: 74  VLKRVRFSHGNPLQALEFFYYTDNRKGFYHTPYSLDTILYILG----RSRKFDHIWDVLI 129

Query: 144 YMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-------------INALNLLLDALCKC 190
            MKR ++  +    + ++L +  +   V+   E                 N LL  LC+ 
Sbjct: 130 KMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFRKFKKFVSVLDTTCFNALLRTLCQE 189

Query: 191 GLVDYAETICKRVKNKVKPNANTYNIL--GMQT-------LEEMIQMGHAPDNFTYNTAI 241
             +  A  +  R+K + KPN  T+NIL  G +         EEM ++G  PD  +YN+ I
Sbjct: 190 KSMTDARNVYHRLKKEFKPNLQTFNILLSGWKQSEEAELFFEEMRELGIKPDVVSYNSLI 249

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           D +CK R + +A  + E MR +     SP   TY  +I  L    + ++   +L  M   
Sbjct: 250 DVYCKDREMEKAYKVVEKMREEDI---SPDVITYTSIIGGLGLVGQPDKARDILNEMKEY 306

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           GC PDV+ Y  V+   C+A ++ +A   ++EM +KG  P+  TYN F +V   + +   +
Sbjct: 307 GCYPDVAAYNAVIRNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNS 366

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             LY RM+E GC P+ Q+   LI ++ +  + + A   W++M ++G    +    V+ D 
Sbjct: 367 WSLYRRMMESGCLPNTQSCMFLIRLFRKHEKVEMALTLWNDMVEKGFGSYILVSDVLFDL 426

Query: 422 LFDCSKVEEA--CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           L D  K+ EA  CFL  +++ KG K     F    + + ++    A+  L   M  F
Sbjct: 427 LCDMGKLVEAEKCFL--QMIEKGHKPSNVSFRRIKVLMELVNKHDALLNLQKKMAIF 481


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 195/428 (45%), Gaps = 33/428 (7%)

Query: 42  DESSDSVS-DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           D  +D  S DV K+Y  +         +E AL   GV + +     VL R      + +R
Sbjct: 67  DRDADEFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYR 126

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF+WA  Q  Y H    Y  MI  L     K +QF  V ++++ M++ N   +  +V ++
Sbjct: 127 FFVWASKQPGYRHSYEVYKAMIKTLG----KMRQFGAVWALIEEMRKENPYMLTPEVFIV 182

Query: 161 ILKQYT-------------EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           +++++              E  K   +P+      LLDALCK G V  A ++ + ++ + 
Sbjct: 183 LMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRF 242

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            PN   +  L                L ++ + G  PD   YN  +  + +A  + +A D
Sbjct: 243 NPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFD 302

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L   M+        P A ++ I+I +  + ++M+E   +   M  SGC  DV TY  ++ 
Sbjct: 303 LLAEMK---KVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLIS 359

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G C  G  ++AY+ L++M  KG+ P  ++Y C +      +  +E + L   M ++GC P
Sbjct: 360 GFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVP 419

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            +  YN +I +  +LG+   A   W EM   G    +DTY +M+ G      + EAC   
Sbjct: 420 DLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYF 479

Query: 436 EEVVNKGL 443
           +E+V +GL
Sbjct: 480 KEMVERGL 487



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 4/254 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+      Y   I T  K R       L E MR +   + +P  + + +++       
Sbjct: 134 QPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTP--EVFIVLMRRFASVR 191

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +++   +L  M   GC PD   +  +L+ +C  G V+EA    E+M  + + P++  + 
Sbjct: 192 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFT 250

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C      EA  +  ++ E G  P +  YN L+  Y + G+   AF+   EM K 
Sbjct: 251 SLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKV 310

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
            C  +  ++ ++I       K++EA  +  E+   G +     + + +      G+    
Sbjct: 311 NCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKA 370

Query: 467 HKLSDHM-RKFYNP 479
           +++ D M +K ++P
Sbjct: 371 YEILDDMIQKGHDP 384



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 18/238 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           ++ +TE      + ++     L+   CK G  D A E +   ++    P+  +Y  +   
Sbjct: 336 MRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMA 395

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     M+ +EEM ++G  PD   YNT I   CK   + EA  L+  M+  G    
Sbjct: 396 HEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGL--- 452

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL--PDVSTYKEVLEGMCLAGKVEEA 326
           +P   TY +M+   +    + E       M+  G L  P   T KE+   +  A K+E A
Sbjct: 453 NPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMA 512

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                 M  KG   ++  +  ++  L  N +  EA      M++    P   T+  L+
Sbjct: 513 KNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLM 570


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 195/428 (45%), Gaps = 33/428 (7%)

Query: 42  DESSDSVS-DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           D  +D  S DV K+Y  +         +E AL   GV + +     VL R      + +R
Sbjct: 90  DRDADEFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYR 149

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF+WA  Q  Y H    Y  MI  L     K +QF  V ++++ M++ N   +  +V ++
Sbjct: 150 FFVWASKQPGYRHSYEVYKAMIKTLG----KMRQFGAVWALIEEMRKENPYMLTPEVFIV 205

Query: 161 ILKQYT-------------EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           +++++              E  K   +P+      LLDALCK G V  A ++ + ++ + 
Sbjct: 206 LMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRF 265

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            PN   +  L                L ++ + G  PD   YN  +  + +A  + +A D
Sbjct: 266 NPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFD 325

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L   M+        P A ++ I+I +  + ++M+E   +   M  SGC  DV TY  ++ 
Sbjct: 326 LLAEMK---KVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLIS 382

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G C  G  ++AY+ L++M  KG+ P  ++Y C +      +  +E + L   M ++GC P
Sbjct: 383 GFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVP 442

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            +  YN +I +  +LG+   A   W EM   G    +DTY +M+ G      + EAC   
Sbjct: 443 DLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYF 502

Query: 436 EEVVNKGL 443
           +E+V +GL
Sbjct: 503 KEMVERGL 510



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 4/254 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+      Y   I T  K R       L E MR +   + +P  + + +++       
Sbjct: 157 QPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTP--EVFIVLMRRFASVR 214

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +++   +L  M   GC PD   +  +L+ +C  G V+EA    E+M  + + P++  + 
Sbjct: 215 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFT 273

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C      EA  +  ++ E G  P +  YN L+  Y + G+   AF+   EM K 
Sbjct: 274 SLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKV 333

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
            C  +  ++ ++I       K++EA  +  E+   G +     + + +      G+    
Sbjct: 334 NCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKA 393

Query: 467 HKLSDHM-RKFYNP 479
           +++ D M +K ++P
Sbjct: 394 YEILDDMIQKGHDP 407



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 18/238 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           ++ +TE      + ++     L+   CK G  D A E +   ++    P+  +Y  +   
Sbjct: 359 MRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMA 418

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     M+ +EEM ++G  PD   YNT I   CK   + EA  L+  M+  G    
Sbjct: 419 HEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGL--- 475

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL--PDVSTYKEVLEGMCLAGKVEEA 326
           +P   TY +M+   +    + E       M+  G L  P   T KE+   +  A K+E A
Sbjct: 476 NPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMA 535

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                 M  KG   ++  +  ++  L  N +  EA      M++    P   T+  L+
Sbjct: 536 KNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLM 593


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 203/428 (47%), Gaps = 33/428 (7%)

Query: 42  DESSDS-VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           D++ D   SDV K+Y  +    +    +E AL   GV +       VL R      +A+R
Sbjct: 56  DQTHDEFASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYR 115

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           F+ WA  Q  +  +  AY  MI +LS    + +QF  V ++++ M++ N   +   V ++
Sbjct: 116 FYSWASKQSGHRLDHDAYKAMIKVLS----RMRQFGAVWALIEEMRQENPHLITPQVFVI 171

Query: 161 ILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           +++++     V               +P+      LLDAL K G V  A ++ + ++ + 
Sbjct: 172 LMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYRW 231

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           KP+   +  L                L +M   G  PD   YN  +  + +A  + +A D
Sbjct: 232 KPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYD 291

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L + MR KG     P A +Y ++I +L +++R+EE   +   M  +GC  D+ TY  ++ 
Sbjct: 292 LLKEMRRKGC---EPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLIS 348

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G C  GK++  Y+ L+EM  +G+ P+ V Y   +      +  +E   L   M ++GC P
Sbjct: 349 GFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAP 408

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            +  YN +I +  +LGE       W+EM+  G +  +DT+ +MI+G  +   + EAC   
Sbjct: 409 DLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYF 468

Query: 436 EEVVNKGL 443
           +E+V +GL
Sbjct: 469 KEMVGRGL 476



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 6/258 (2%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q GH  D+  Y   I    + R       L E MR +   + +P  + + I++       
Sbjct: 123 QSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITP--QVFVILMRRFASAR 180

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            + +   +L  M N GC PD   +  +L+ +   G V+EA    EE+  + + P +  + 
Sbjct: 181 MVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYR-WKPSVKHFT 239

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C      EA  +  +M + G  P +  YN L+  Y +  +   A++   EM ++
Sbjct: 240 SLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRK 299

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  +  +Y V+I  L    ++EEA  +  E+   G +     + + +      G +   
Sbjct: 300 GCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRG 359

Query: 467 HKLSDHMRK---FYNPVI 481
           ++L D M +   F N VI
Sbjct: 360 YELLDEMIQQGHFPNQVI 377


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 239/511 (46%), Gaps = 39/511 (7%)

Query: 16  VLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL 75
           +L+R    +S  +YI   PS + +    SS+   DV K++  I+ +++  + ++++L S 
Sbjct: 1   MLLRRFSFQSPSNYIP--PSTLIRHRLLSSNQNDDVQKVF-GILSSTSTPEQLKQSLKSS 57

Query: 76  GVPLTTDSVVGVLQRFQFEE---KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKA 132
           GV L+ D +  VL+R +F          FF + G +  + H   + + M+ IL     ++
Sbjct: 58  GVFLSNDVIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHSSFSLDTMLYILG----RS 113

Query: 133 KQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-------------INA 179
           + F  V  +L   +R ++  +    ++++L +  +   V+   E              N 
Sbjct: 114 RMFGQVWELLIEARRKDQTAITARTVMVVLGRIAKVCSVRQTVESFRKFRKLVQEFDTNC 173

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLE-------EMIQMGH 230
            N LL  LC+   +  A  +   +K++ +PN  T+NIL  G +T E       EM +MG 
Sbjct: 174 FNALLRTLCQEKSMADARNVYHSLKHRFRPNLQTFNILLSGWKTPEDADLFFKEMKEMGV 233

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            PD  TYN+ +D +CK R + +A  + + MR +     SP   TY  +I  L    + ++
Sbjct: 234 TPDVVTYNSLMDVYCKGREIEKAYKMLDEMRDQDF---SPDVITYTCIIGGLGLIGQPDK 290

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             ++L  M   GC PD + Y   +   C+A ++ +A+  +EEM  KG  P+  TYN F +
Sbjct: 291 ARNVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFR 350

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
           V   + +   +  +Y RM+  GC P+ Q+   LI ++    + + A + W +M ++G   
Sbjct: 351 VFYWSNDLQSSWNMYQRMMVEGCLPNTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFGS 410

Query: 411 DVDTYCVMIDGLFDCSKVEEA--CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
                 V+ D L D  K+EEA  CFL  E+V KG K  +  F    + + +     A+  
Sbjct: 411 YTLVSDVLFDLLCDMGKLEEAEKCFL--EMVEKGQKPSHVSFRRIKVLMELANRHEALQS 468

Query: 469 LSDHMRKFYNPVIARRLALNQKRVRISLREK 499
           L   M  F  P+   +  +N      SL  K
Sbjct: 469 LMQKMAMFGRPLQVDQSTVNPAETSDSLFTK 499


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 203/435 (46%), Gaps = 34/435 (7%)

Query: 35  SLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFE 94
            LVC    E  +   +V K+Y  + ++ +    +E AL+  G+ L    ++ VL R    
Sbjct: 52  GLVCPEKHED-EFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDA 110

Query: 95  EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
             + +RFF+WA  Q  Y H       M+ ILS    K +QF  V  +++ M++ N   + 
Sbjct: 111 GNLGYRFFLWATKQPGYFHSYEVCKSMVMILS----KMRQFGAVWGLIEEMRKTNPELIE 166

Query: 155 VDVLLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICK 201
            ++ +++++++     VK              +P+      LLDALCK G V  A  + +
Sbjct: 167 PELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFE 226

Query: 202 RVKNKVKPNANTYNILG---------MQTLEEMIQMGHA---PDNFTYNTAIDTFCKARM 249
            ++ K  PN   +  L          M+  E ++QM  A   PD   +   +  +  A  
Sbjct: 227 DMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK 286

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVS 308
           + +A DL   MR +G     P    Y ++I AL + + RM+E   +   M   GC  D+ 
Sbjct: 287 MADAYDLMNDMRKRGF---EPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIV 343

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G C  G +++ Y  L++M  KG  P  VTY   +      +  +E L L  +M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
              GC P +  YN++I +  +LGE   A   W+EM+  G +  VDT+ +MI+G      +
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463

Query: 429 EEACFLLEEVVNKGL 443
            EAC   +E+V++G+
Sbjct: 464 IEACNHFKEMVSRGI 478


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 203/435 (46%), Gaps = 34/435 (7%)

Query: 35  SLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFE 94
            LVC    E  +   +V K+Y  + ++ +    +E AL+  G+ L    ++ VL R    
Sbjct: 52  GLVCPEKHED-EFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDA 110

Query: 95  EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
             + +RFF+WA  Q  Y H       M+ ILS    K +QF  V  +++ M++ N   + 
Sbjct: 111 GNLGYRFFLWATKQPGYFHSYEVCKSMVMILS----KMRQFGAVWGLIEEMRKTNPELIE 166

Query: 155 VDVLLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICK 201
            ++ +++++++     VK              +P+      LLDALCK G V  A  + +
Sbjct: 167 PELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFE 226

Query: 202 RVKNKVKPNANTYNILG---------MQTLEEMIQMGHA---PDNFTYNTAIDTFCKARM 249
            ++ K  PN   +  L          M+  E ++QM  A   PD   +   +  +  A  
Sbjct: 227 DMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK 286

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVS 308
           + +A DL   MR +G     P    Y ++I AL + + RM+E   +   M   GC  D+ 
Sbjct: 287 MADAYDLMNDMRKRGF---EPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIV 343

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G C  G +++ Y  L++M  KG  P  VTY   +      +  +E L L  +M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
              GC P +  YN++I +  +LGE   A   W+EM+  G +  VDT+ +MI+G      +
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463

Query: 429 EEACFLLEEVVNKGL 443
            EAC   +E+V++G+
Sbjct: 464 IEACNHFKEMVSRGI 478


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 208/431 (48%), Gaps = 38/431 (8%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           S D V++++++   + D+ N  D++E  L +    ++++ V  VL+R +     A RFF+
Sbjct: 34  SPDLVNEISRV---LSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFL 90

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
           WA    ++AH   +Y+++++IL S+K    QF L+   L   +  N   +   V  ++ +
Sbjct: 91  WARRIPDFAHSLESYHILVEILGSSK----QFALLWDFLIEAREYNYFEISSKVFWIVFR 146

Query: 164 QYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKP 209
            Y+               ++   +P ++ L+ LL +LC    V++A+    + K   + P
Sbjct: 147 AYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVP 206

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +A TY+IL              +  +EM++     D   YN  +D  CK+  V     +F
Sbjct: 207 SAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMF 266

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + M   G+    P A ++AI I A      +   + +L  M     +P+V T+  +++ +
Sbjct: 267 QEM---GNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTL 323

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C   KV++AY  L+EM  KG  PD  TYN  +   CD+   + A +L  RM    C P  
Sbjct: 324 CKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDR 383

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLE 436
            TYNM++ +   +G  D A E W  M +R     V TY VMI GL     K+EEAC   E
Sbjct: 384 HTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFE 443

Query: 437 EVVNKGLKLPY 447
            ++++G+  PY
Sbjct: 444 MMIDEGIP-PY 453



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 17/246 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           K + E ++     ++ A N LLDALCK G VD    + + + N  +KP+A ++ I     
Sbjct: 229 KVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAY 288

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     + L+ M +    P+ +T+N  I T CK   V +A  L + M  KG+   +
Sbjct: 289 CDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGA---N 345

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  ++     +  +     LL  M  + CLPD  TY  VL+ +   G+ + A + 
Sbjct: 346 PDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEI 405

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNG-DEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            E M  + + P + TY   +  L   K   +EA R +  MI+ G  P   T  ML +   
Sbjct: 406 WEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLV 465

Query: 389 ELGEPD 394
             G+ D
Sbjct: 466 GWGQMD 471



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V      A    EA +    M   G  P +   +  L  LCD K+ + A   +G+    G
Sbjct: 144 VFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFG 203

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             PS +TY++L+  +  + +  GA + + EM +R C  D+  Y  ++D L     V+   
Sbjct: 204 IVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGY 263

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            + +E+ N GLK     F  ++      GD+ + +K+ D M+++
Sbjct: 264 KMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRY 307


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 200/432 (46%), Gaps = 35/432 (8%)

Query: 40  VFDESSDS--VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI 97
           VF E  +     DV K+Y  + +  +    +E +L+  G+ L    +V VL R      +
Sbjct: 57  VFPEKHEDEFAGDVEKIYRILRNYHSRVPKLELSLNESGIDLRPGLIVRVLSRCGDAGNL 116

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
            +RFF+WA  Q  Y H       M+ ILS    K +QF  V  +++ M++ N   +  ++
Sbjct: 117 GYRFFLWATKQPGYCHSYEVCKSMVKILS----KMRQFGAVWGLIEEMRKENPELIEPEL 172

Query: 158 LLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVK 204
            +++++++     VK              +P+      LLDALCK G V  A  + + ++
Sbjct: 173 FVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMR 232

Query: 205 NKVKPNANTYNILG---------MQTLEEMIQMGHA---PDNFTYNTAIDTFCKARMVTE 252
            K+ PN   +  L          M+  E ++QM  A   PD   +   +  +  A  + +
Sbjct: 233 EKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMAD 292

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYK 311
           A DL   MR +G     P A  Y ++I AL + + RM+E   +   M   GC  D+ TY 
Sbjct: 293 AYDLLNDMRKRGY---EPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYT 349

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++ G C  G +++ Y  L++M  KG  P  VTY   L      +  +E L L  +M ++
Sbjct: 350 ALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQI 409

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC P +  YN++I +     E   A   W+EM+  G +   D + +MI+G      + EA
Sbjct: 410 GCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEA 469

Query: 432 CFLLEEVVNKGL 443
           C   +E+V++G+
Sbjct: 470 CSHFKEMVSRGI 481


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 197/425 (46%), Gaps = 38/425 (8%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V+++   + D  N + ++E  L S    ++TD V  VL+R +     A RFF+WA     
Sbjct: 51  VSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKRIPG 110

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT---- 166
           +     +Y++++DIL S+     QF ++   L  ++      +  ++   +   Y+    
Sbjct: 111 FEPSDDSYHIVVDILGSSG----QFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADL 166

Query: 167 --EKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
             + I+          +  ++ L+ LL  LCK   V +A+    +VK+   P+  TY+IL
Sbjct: 167 PQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVKTYSIL 226

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         +  +EM + G   D   YN+ ++  CK     EA  +F  M + G 
Sbjct: 227 TRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGV 286

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P A TY+I I +  Q + +   + +L        LP+V TY  V++ +C    VEE
Sbjct: 287 ---DPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEE 343

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AY+ L+EM  +G  PD  +YN      CD+   + AL L  RM    C P   TYNM++ 
Sbjct: 344 AYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLK 403

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKG 442
           +   +G  D A E W  M KRG    V TY VMI G   C    K+EEAC   E ++++G
Sbjct: 404 LLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGF--CKKKWKLEEACKYFEMMIDEG 461

Query: 443 LKLPY 447
           +  PY
Sbjct: 462 IP-PY 465


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 210/438 (47%), Gaps = 37/438 (8%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           D     +S+ AK+   I+ ++     +   LD+LGV ++ + V  VL+       +A  F
Sbjct: 89  DGPPVGMSEAAKMVCRIV-STQPEPKIASTLDALGVAVSPELVAEVLKNLSNAGMLALAF 147

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161
           F WA  Q+ +++    ++ +I+ L     K KQFRLV S+++ M+   +  +  D   +I
Sbjct: 148 FRWAERQEGFSYTAEGFHNLIEALG----KIKQFRLVWSLVETMR--CRGLLSKDTFKLI 201

Query: 162 LKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK 208
           +++Y    KVK              + E++  N L+D L K   V  A+ I K +K K K
Sbjct: 202 VRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGK 261

Query: 209 --PNANTYNILG-----------MQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
             P+  TY +L            ++T+ +EMI  G  PD   Y   I  FCK+    EA 
Sbjct: 262 FVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAI 321

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            +F  M   G     P+   Y ++I  L   +R++E      H   SG   +V T   V+
Sbjct: 322 KVFYEMEASGCM---PSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVV 378

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
              C A K + A+K ++EM      P+  TY+  L  L  ++  +EA  ++ RM   GC 
Sbjct: 379 GAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCE 438

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P + TY M++ M+   G  D A + W +M ++G    +  +  +I+GL   +++EEAC  
Sbjct: 439 PQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVY 498

Query: 435 LEEVVNKGLKLPYRKFDS 452
            +E+++KG++ P + F +
Sbjct: 499 FQEMLDKGIRPPGQLFSN 516



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 141/315 (44%), Gaps = 37/315 (11%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV---------------LLMIL 162
           YN +ID LS    K+KQ +   ++   MKR  K FVP D+               LLM+ 
Sbjct: 233 YNWLIDTLS----KSKQVKKAQAIYKEMKRKGK-FVP-DLKTYTVLMEGWGHEKDLLMVK 286

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY----NIL 217
             Y E I    +P++ A  +L+ A CK G  D A  +   ++ +   P+ + Y    N L
Sbjct: 287 TMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGL 346

Query: 218 G--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
           G        ++  E   + G   +  T N  +  +C+A     A  + + MR        
Sbjct: 347 GSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMR---KCKVG 403

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P ++TY +++  L+++ + EE +++   M   GC P ++TY  ++   C  G+V+ A K 
Sbjct: 404 PNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKV 463

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++MG KG  P +  ++  +  LC     +EA   +  M++ G  P  Q ++ L     +
Sbjct: 464 WKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVQ 523

Query: 390 LGEPDGAFETWHEMD 404
            G    A E   ++D
Sbjct: 524 GGRISLAQEVALKLD 538


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 208/460 (45%), Gaps = 38/460 (8%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           D + DS     +L + II    A   +E  LD   + +T D    VL+R      +A+RF
Sbjct: 29  DVAVDSFDPAKRLCKLIISCQKA-SGLELELDHSDLRVTPDVAERVLERLDNAGMLAYRF 87

Query: 102 FMWAGHQDNYA--HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
           F WA  Q      H   +Y+ ++  L+    K +Q++L+  ++  M+R     V V+   
Sbjct: 88  FEWARKQKRGGCNHTIRSYHTVVASLA----KIRQYQLMWDVVAIMRREG--VVNVETFG 141

Query: 160 MILKQYTEKIKVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNK 206
           +I+++Y    K                 P + A N LL ALCK   V  A+ I  ++  +
Sbjct: 142 IIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNGR 201

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
             P+A TY+IL              +   EM+  G  PD  TY   +D+ CK   V EA 
Sbjct: 202 FNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAV 261

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            + + M ++G     PT   Y++++       R+E+  +    M   G +PDV  Y  ++
Sbjct: 262 LVVQDMSSRGC---QPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALV 318

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
              C   K E A++ +++M   G  P+  T+N  L  L      DEA R++ RMI+  C 
Sbjct: 319 TAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQ 377

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P   TY M+I M+ E    + A + W  M  +     + T+ V+I+GL D  +V +AC L
Sbjct: 378 PDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVL 437

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           LE+++ KG++ P   F      L   G    +  L D M+
Sbjct: 438 LEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMK 477


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 200/437 (45%), Gaps = 38/437 (8%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF 102
           ES +   D  K  + I  N N+   +E  LD   + L+   +V VL++      +A  FF
Sbjct: 86  ESDEIAQDAEKFCKLISKNPNSC--IESLLDGAPMELSPALIVEVLKKLSNAGFLALSFF 143

Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL 162
            WA  Q  + H   +YNL+I+ L     K KQF ++ +++  MKR  K  +  +   +I 
Sbjct: 144 RWAEKQKGFKHTTESYNLLIEALG----KIKQFNVIWNLVSDMKR--KGILSRETFALIT 197

Query: 163 KQYTEKIKVKTQPE-------------INALNLLLDALCKCGLVDYAETICKRVKN-KVK 208
           ++Y    KVK   E             ++  N LLD LCK   V  A+ +  ++K+ + K
Sbjct: 198 RRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFK 257

Query: 209 PNANTYNIL----GM--------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P+  +Y IL    G         +   EM   G  PD  T+   I+  CKAR   EA  L
Sbjct: 258 PDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRL 317

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           F  M  K      P+   +  +I  L    R++E       +  SG  P+  TY  V+  
Sbjct: 318 FHEMEAKNI---KPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGA 374

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWP 375
            C + K+  AY+ ++EM   G  P+  TY+  L  L   +   EA  ++ RM  E GC P
Sbjct: 375 YCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEP 434

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           ++ TY+++I M+      D A + W EM  +G    +  +  +I+ L    K+E+AC   
Sbjct: 435 TLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYF 494

Query: 436 EEVVNKGLKLPYRKFDS 452
           +E+++ G++ P   F +
Sbjct: 495 QEMLDVGIRPPATMFSN 511



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 17/254 (6%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY-- 214
           LL + + Y E      +P++    +L++A CK    D A  +   ++ K +KP+ + +  
Sbjct: 276 LLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCT 335

Query: 215 --NILG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
             N LG        ++  E++   G AP+  TYN  +  +C +  +  A  + + MR  G
Sbjct: 336 LINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSG 395

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKV 323
                P ++TY I++  L++  + +E +S+   M    GC P +STY  ++   C   +V
Sbjct: 396 V---GPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERV 452

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           + A +  +EM  KG  P +  ++  +  LC     ++A   +  M++VG  P    ++ L
Sbjct: 453 DMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNL 512

Query: 384 ISMYFELGEPDGAF 397
                + G  D A 
Sbjct: 513 KQALLDDGRKDTAL 526



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 111/249 (44%), Gaps = 4/249 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G      +YN  I+   K +      +L   M+ KG      + +T+A++     +  
Sbjct: 149 QKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGIL----SRETFALITRRYARAR 204

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +++E       M   G    VS +  +L+ +C +  V++A +  ++M +  + PDI +Y 
Sbjct: 205 KVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYT 264

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L+    ++N  +   +Y  M + G  P V T+ +LI+ + +  + D A   +HEM+ +
Sbjct: 265 ILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAK 324

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
                   +C +I+GL    +++EA    E++   G       +++ +        +   
Sbjct: 325 NIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYA 384

Query: 467 HKLSDHMRK 475
           +++ D MRK
Sbjct: 385 YRMVDEMRK 393


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 185/402 (46%), Gaps = 32/402 (7%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
            +E AL   GV + +     VL R      + +RFF+WA  Q  Y H    Y  MI IL 
Sbjct: 107 KLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILG 166

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT------------- 173
               K +QF  V ++++ M+R N  FV   V +++++++     VK              
Sbjct: 167 ----KMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGC 222

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           +P+ +    LLDALCK G V  A ++ + ++ +  P    +  L                
Sbjct: 223 EPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYV 282

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L ++ + G  PD   YN  +  +  A  + +A DL + MR K      P   ++  +I A
Sbjct: 283 LVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKEC---EPNVMSFTTLIQA 339

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    +MEE   +   M + GC  D  TY  ++ G C  GK+ + Y+ L+ M  +G+ P+
Sbjct: 340 LCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPN 399

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +TY   +      +  +E + L   M ++GC P +  YN++I +  +LGE       W+
Sbjct: 400 PMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWN 459

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM+  G +  +DT+ +MI G      + EAC   +E+V +GL
Sbjct: 460 EMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGL 501



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 3/247 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+      Y   I    K R       L E MR +     SP    + +++       
Sbjct: 148 QPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPY--VFVVLMRRFASAR 205

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +++   +L  M   GC PD   +  +L+ +C  G V+EA    E+M  + + P +  + 
Sbjct: 206 MVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIR-FTPTLKHFT 264

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C      EA  +  ++ E G  P +  YN L++ Y   G+   A++   EM ++
Sbjct: 265 SLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRK 324

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
            C  +V ++  +I  L    K+EEA  +  E+ + G       + + +      G +   
Sbjct: 325 ECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKG 384

Query: 467 HKLSDHM 473
           ++L D+M
Sbjct: 385 YELLDNM 391



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 18/217 (8%)

Query: 183 LLDALCKCGLVDYA-ETICKRVKNKVKPNANTY-NILG-----------MQTLEEMIQMG 229
           L+   CK G +    E +   ++    PN  TY +I+            ++ +EEM ++G
Sbjct: 371 LISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIG 430

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD   YN  I   CK   + E   ++  M   G    SP   T+ IMI   +    + 
Sbjct: 431 CTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGL---SPGLDTFVIMIHGFLSQRCLV 487

Query: 290 ECFSLLGHMINSGCL--PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           E       M+  G L  P   T KE+L  +  A K+E +      +  KG   ++  +  
Sbjct: 488 EACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTI 547

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           ++  L  N +  EA      M++ G  P   T+  L+
Sbjct: 548 WIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLM 584


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 200/437 (45%), Gaps = 38/437 (8%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF 102
           ES +   D  K  + I  N N+   +E  LD   + L+   +V VL++      +A  FF
Sbjct: 86  ESDEIAQDAEKFCKLISKNPNSC--IESLLDGAPMELSPALIVEVLKKLSNAGFLALSFF 143

Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL 162
            WA  Q  + H   +YNL+I+ L     K KQF ++ +++  MKR  K  +  +   +I 
Sbjct: 144 RWAEKQKGFKHTTESYNLLIEALG----KIKQFNVIWNLVSDMKR--KGILSRETFALIT 197

Query: 163 KQYTEKIKVKTQPE-------------INALNLLLDALCKCGLVDYAETICKRVKN-KVK 208
           ++Y    KVK   E             ++  N LLD LCK   V  A+ +  ++K+ + K
Sbjct: 198 RRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFK 257

Query: 209 PNANTYNIL----GM--------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P+  +Y IL    G         +   EM   G  PD  T+   I+  CKAR   EA  L
Sbjct: 258 PDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRL 317

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           F  M  K      P+   +  +I  L    R++E       +  SG  P+  TY  V+  
Sbjct: 318 FHEMEAKNI---KPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGA 374

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWP 375
            C + K+  AY+ ++EM   G  P+  TY+  L  L   +   EA  ++ RM  E GC P
Sbjct: 375 YCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEP 434

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           ++ TY+++I M+      D A + W EM  +G    +  +  +I+ L    K+E+AC   
Sbjct: 435 TLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYF 494

Query: 436 EEVVNKGLKLPYRKFDS 452
           +E+++ G++ P   F +
Sbjct: 495 QEMLDVGIRPPATMFSN 511



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 17/254 (6%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY-- 214
           LL + + Y E      +P++    +L++A CK    D A  +   ++ K +KP+ + +  
Sbjct: 276 LLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCT 335

Query: 215 --NILG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
             N LG        ++  E++   G AP+  TYN  +  +C +  +  A  + + MR  G
Sbjct: 336 LINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSG 395

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKV 323
                P ++TY I++  L++  + +E +S+   M    GC P +STY  ++   C   +V
Sbjct: 396 V---GPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERV 452

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           + A +  +EM  KG  P +  ++  +  LC     ++A   +  M++VG  P    ++ L
Sbjct: 453 DMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNL 512

Query: 384 ISMYFELGEPDGAF 397
                + G  D A 
Sbjct: 513 KQALLDDGRKDTAL 526



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 111/249 (44%), Gaps = 4/249 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G      +YN  I+   K +      +L   M+ KG      + +T+A++     +  
Sbjct: 149 QKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGIL----SRETFALITRRYARAR 204

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +++E       M   G    VS +  +L+ +C +  V++A +  ++M +  + PDI +Y 
Sbjct: 205 KVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYT 264

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L+    ++N  +   +Y  M + G  P V T+ +LI+ + +  + D A   +HEM+ +
Sbjct: 265 ILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAK 324

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
                   +C +I+GL    +++EA    E++   G       +++ +        +   
Sbjct: 325 NIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYA 384

Query: 467 HKLSDHMRK 475
           +++ D MRK
Sbjct: 385 YRMVDEMRK 393



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 16/182 (8%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P A TYN +              + ++EM + G  P++ TY+  +    K R   EA  +
Sbjct: 363 PEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSV 422

Query: 257 FEFM-RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           F+ M R  G     PT  TY IMI      +R++    +   M   G LP +  +  ++ 
Sbjct: 423 FQRMSREPGC---EPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLIN 479

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            +C   K+E+A  + +EM + G  P    ++   + L D+   D AL +  ++ ++   P
Sbjct: 480 SLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIXKLRKAP 539

Query: 376 SV 377
            V
Sbjct: 540 LV 541


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 208/438 (47%), Gaps = 37/438 (8%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           D     +S+ AK+   I+ ++     +   LD+LGV ++ + V  VL+       +A  F
Sbjct: 93  DGPPVGISEAAKMVCRIV-STQPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAF 151

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161
           F WA  Q+ +++    ++ +I+ L     K KQF+LV S+++ M+   +  +  D   +I
Sbjct: 152 FRWAERQEGFSYTAEGFHNLIEALG----KIKQFKLVWSLVETMR--CRGLLSKDTFKLI 205

Query: 162 LKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK 208
           +++Y    KVK              + E++  N L+D L K   V  A+ I K +K K K
Sbjct: 206 VRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGK 265

Query: 209 --PNANTYNILG-----------MQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
             P+  TY +L            ++T+ +EMI  G  PD   Y   I  FCK+    EA 
Sbjct: 266 FVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAI 325

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            +F  M   G     P+   Y ++I  L   +R++E          SG   +V T   V+
Sbjct: 326 KVFYEMEASGCM---PSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVV 382

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
              C A K E A+K ++EM      P+  TY+  L  L  ++  +EA  ++ RM   GC 
Sbjct: 383 GAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCE 442

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P + TY M++ M+   G  D A   W +M +RG    +  +  +I+GL   +++EEAC  
Sbjct: 443 PQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVY 502

Query: 435 LEEVVNKGLKLPYRKFDS 452
            +E+++KG++ P + F +
Sbjct: 503 FQEMLDKGIRPPGQLFSN 520



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 141/315 (44%), Gaps = 37/315 (11%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV---------------LLMIL 162
           YN +ID LS    K+KQ +   ++   MKR  K FVP D+               LLM+ 
Sbjct: 237 YNWLIDTLS----KSKQVKKAQAIYKEMKRKGK-FVP-DLKTYTVLMEGWGHEKDLLMVK 290

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY----NIL 217
             Y E I    +P++ A  +L+ A CK G  D A  +   ++ +   P+ + Y    N L
Sbjct: 291 TMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGL 350

Query: 218 G--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
           G        ++  E+  + G   +  T N  +  +C+A     A  + + MR        
Sbjct: 351 GSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMR---ECKIG 407

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P ++TY +++  L+++ + EE +++   M   GC P ++TY  ++   C  G+V+ A   
Sbjct: 408 PNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNV 467

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++MG +G  P +  ++  +  LC     +EA   +  M++ G  P  Q ++ L     E
Sbjct: 468 WKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVE 527

Query: 390 LGEPDGAFETWHEMD 404
            G    A E   ++D
Sbjct: 528 GGRISLAQEMASKLD 542


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 196/425 (46%), Gaps = 38/425 (8%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V+++   + D  N + ++E  L S    ++TD V  VL+R +     A RFF+WA     
Sbjct: 51  VSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKRIPG 110

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT---- 166
           +     +Y++++DIL  +     QF ++   L  ++      +  ++   +   Y+    
Sbjct: 111 FEPSDDSYHIVVDILGGSG----QFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADL 166

Query: 167 --EKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
             + I+          +  ++ L+ LL  LCK   V +A+    +VK+   P+  TY+IL
Sbjct: 167 PQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVKTYSIL 226

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         +  +EM + G   D   YN+ ++  CK     EA  +F  M + G 
Sbjct: 227 TRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGV 286

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P A TY+I I +  Q + +   + +L        LP+V TY  V++ +C    VEE
Sbjct: 287 ---DPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEE 343

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AY+ L+EM  +G  PD  +YN      CD+   + AL L  RM    C P   TYNM++ 
Sbjct: 344 AYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLK 403

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKG 442
           +   +G  D A E W  M KRG    V TY VMI G   C    K+EEAC   E ++++G
Sbjct: 404 LLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGF--CKKKWKLEEACKYFEMMIDEG 461

Query: 443 LKLPY 447
           +  PY
Sbjct: 462 IP-PY 465


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 206/447 (46%), Gaps = 41/447 (9%)

Query: 31  GKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQR 90
           G   S+ C +    S   SD++K    +I +      +E  LD  GV +T +    VL+ 
Sbjct: 24  GGGASMACDI----SVDASDLSKRLCKLIISCRKASALEHELDHSGVRVTPEIAESVLKH 79

Query: 91  FQFEEKIAFRFFMWAGHQDNY--AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN 148
                 +A+RFF WA  Q     AH   +Y+ ++  L+    K +Q++L+  ++  M++ 
Sbjct: 80  LDNAGMLAYRFFEWARKQKRGVCAHTVRSYHTVVTSLA----KIRQYQLMWDVVAIMRKE 135

Query: 149 NKVFVPVDVLLMILKQYTEKIKVK-------------TQPEINALNLLLDALCKCGLVDY 195
                 V+   +I+++Y    K+                  + A N LL ALCK   V  
Sbjct: 136 G--VANVETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLSALCKSKNVRK 193

Query: 196 AETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDT 243
           A+ I  ++ N+  P+A TY+IL              +   +M+  G  PD  TY   +D 
Sbjct: 194 AQEIFDKMNNRFSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDA 253

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            CK   V EA  + + M ++G     PT   Y+I++     + R+E+  +    M   G 
Sbjct: 254 LCKTGRVEEAVCVVQDMSSRGC---QPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGI 310

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +PDV  Y  ++   C   K E A++ +++M   G  P+  T+N  L  L      DEA R
Sbjct: 311 MPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYR 370

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           ++  MI+  C P   TY M+I M+ E  + + A + W  M  +     + T+ V+I+GL 
Sbjct: 371 VFRSMIK-RCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLC 429

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKF 450
           D  +V +AC LLE+++ KG++ P   F
Sbjct: 430 DKGEVSQACVLLEDMIEKGIRPPGSTF 456



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 38/310 (12%)

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ------- 164
           AH   A+N ++  L     K+K  R    + D M  NN+ F P      IL +       
Sbjct: 172 AHNLAAFNSLLSALC----KSKNVRKAQEIFDKM--NNR-FSPDAKTYSILLEGWGRAPS 224

Query: 165 -------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
                  Y++ +    QP+I    +++DALCK G V+ A  + + + ++  +P    Y+I
Sbjct: 225 LPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSI 284

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             +    +M + G  PD   YN  I  FCK +    A  + + M+  G
Sbjct: 285 LVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHG 344

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP ++T+ I++  L+   + +E + +   MI   C PD  TY  +++  C   K+E
Sbjct: 345 I---SPNSRTWNIILNTLISLGKDDEAYRVFRSMIKR-CKPDSDTYTMMIKMFCENDKIE 400

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A K  + M  K + P + T++  +  LCD     +A  L   MIE G  P   T+  L 
Sbjct: 401 MALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLR 460

Query: 385 SMYFELGEPD 394
            +  + G  D
Sbjct: 461 QLLLKEGRKD 470


>gi|356557763|ref|XP_003547180.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14820, mitochondrial-like [Glycine max]
          Length = 492

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 204/449 (45%), Gaps = 63/449 (14%)

Query: 42  DESSDSVSDVAKLYEA--IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
           D S +S +D A++     +ID   A D NME  LD  GV L+ D VV +LQRF+     A
Sbjct: 54  DVSGESCADPAEVERVCKVIDELFALDRNMEAVLDECGVRLSHDLVVDMLQRFKHAXP-A 112

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
           FRFF WAG +  + H+   YN M+ +L  T+    QF  + +ML+ M       + ++  
Sbjct: 113 FRFFCWAGKRPGFDHDSRTYNCMMCVLGRTR----QFETMVAMLEEMGEMG--LLTMETF 166

Query: 159 LMILKQYTEKIKVKTQPEI-------------NALNLLLDALCKCGLVDYAETIC-KRVK 204
            + +K + E  + K    I             + +N LLD+L    L   A+ +  KRV 
Sbjct: 167 SVAIKTFAEANQRKKAAGIFDLMKKYEFKVGVDVINFLLDSLSAAKLGKEAQAVFEKRVW 226

Query: 205 NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           N                  EMI  G  PD   +N  ++   K +  ++A  LFE M+ K 
Sbjct: 227 N------------------EMIDRGFKPDIVAHNVMLEGLLKCKK-SDAXKLFEIMKAK- 266

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP  ++Y IMI    +   M E    +  M++  C PD + Y  ++ G     K++
Sbjct: 267 --CPSPNVRSYTIMIQDFCKQKMMGEVVEYIDEMVDRECQPDAALYTCLITGFGXKKKMD 324

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
             Y  L+EM  +G  PD  TYN  +K+    +  D+A+R+Y +M + G  P++ TYNM++
Sbjct: 325 MVYNLLKEMRKRGCSPDGGTYNALIKLXTSQQMPDDAVRIYKKMSQSGIKPTIHTYNMIM 384

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             YF     +     W  M ++GC  D ++Y V I                  ++ KG+K
Sbjct: 385 RSYFVTKNYEIGHAIWDXMHQKGCCPDDNSYSVYIG-----------------MLEKGMK 427

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            P   ++     +S IG+   + +L+  M
Sbjct: 428 APQLDYNKCASDISKIGNAVILEELARKM 456



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 4/256 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM +MG      T++ AI TF +A    +AA +F+ M+     +           + A
Sbjct: 152 LEEMGEMGLLTME-TFSVAIKTFAEANQRKKAAGIFDLMKKYEFKVGVDVINFLLDSLSA 210

Query: 282 LVQNDRMEECFS--LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                  +  F   +   MI+ G  PD+  +  +LEG+ L  K  +A K  E M  K   
Sbjct: 211 AKLGKEAQAVFEKRVWNEMIDRGFKPDIVAHNVMLEGL-LKCKKSDAXKLFEIMKAKCPS 269

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P++ +Y   ++  C  K   E +     M++  C P    Y  LI+ +    + D  +  
Sbjct: 270 PNVRSYTIMIQDFCKQKMMGEVVEYIDEMVDRECQPDAALYTCLITGFGXKKKMDMVYNL 329

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             EM KRGC+ D  TY  +I         ++A  + +++   G+K     ++  +    V
Sbjct: 330 LKEMRKRGCSPDGGTYNALIKLXTSQQMPDDAVRIYKKMSQSGIKPTIHTYNMIMRSYFV 389

Query: 460 IGDLGAIHKLSDHMRK 475
             +    H + D M +
Sbjct: 390 TKNYEIGHAIWDXMHQ 405


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 211/458 (46%), Gaps = 40/458 (8%)

Query: 46  DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA 105
           D V+++++L   + D+   + ++E +L+     ++T+ V  VL+R       A RFF+WA
Sbjct: 45  DLVNEISRL---LSDHRYPHHDLELSLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLWA 101

Query: 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165
                + H  ++++++++IL S     KQF ++   L  M+ +    +  ++  +I + Y
Sbjct: 102 KSIPGFQHSVMSFHILVEILGS----CKQFAILWDFLIEMRGSCHYEINSEIFWLIFRAY 157

Query: 166 TEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN 212
           ++               +   +P IN  + LL  LCK   V  A+    + KN+    A 
Sbjct: 158 SQANLPDGAIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAK 217

Query: 213 TYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           TY+IL              +  + M++ G   D   YN  +   CK   V EA  +F  M
Sbjct: 218 TYSILISGWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDM 277

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
            +K      P A TY+I I +    D ++    +L  M     LP+V TY  +++ +C  
Sbjct: 278 LSKRV---EPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKN 334

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
             VEEAY  L+EM ++G  PD  +YN      CD+   + A+RL  RM +  C P   TY
Sbjct: 335 EHVEEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTY 394

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEE 437
           NM++ +   +G  D   + W  M  +     V TY VMI G   C    K+EEAC   E 
Sbjct: 395 NMVLKLLIRIGRFDKVTKVWGNMGDKKFYPSVSTYSVMIHGF--CKKKGKLEEACKYFEM 452

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++++G+       +    QL  +G L  I  L+  MR+
Sbjct: 453 MIDEGIPPYVTTVEMLRNQLLGLGFLDHIEILAAKMRQ 490



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +    M   G  P I  ++  L +LC  K+  +A + + +  +     + +TY++LIS
Sbjct: 166 AIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQA-KNRFLLTAKTYSILIS 224

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            + ++G+ + A E +  M ++GC  D+  Y  ++  L     V+EA  +  ++++K ++ 
Sbjct: 225 GWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEP 284

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF--------YNPVIAR 483
               +  ++       D+ +  ++ D MR++        YN +I R
Sbjct: 285 DAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKR 330


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 202/420 (48%), Gaps = 33/420 (7%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           SD+ K+ E +    ++ D + +AL   GV ++   V  VL+RF  +   AF FF WA  Q
Sbjct: 87  SDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQVLKRFSNDWIPAFGFFKWAKAQ 146

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
             Y H   +YN M+DIL     K K+F L+  +++ M R    +V +  +  ++++    
Sbjct: 147 TGYRHSMNSYNSMVDILG----KLKKFDLMWELVEEMDRLGG-YVSLATMTKVMRRLARA 201

Query: 169 IKVK-------------TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
            + K              + +  A+N L+DAL K   V++A  +    K+ +  N +T+N
Sbjct: 202 SRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNPHTFN 261

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           +L             ++++ EM + G  PD  +Y + ++ +C+ +   +   +   M  K
Sbjct: 262 VLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEK 321

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY I++ AL +   + +   +   M  S C+PD S Y  ++  +  AG++
Sbjct: 322 GCP---PNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRL 378

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           ++A    E+M  +G  PD++TYN  +   C +   ++AL+L  +M E  C P + TY+ L
Sbjct: 379 KDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPL 438

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + M              + M K   + +V TY +++ GL    K+E AC   EE+V+KGL
Sbjct: 439 LKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSKGL 498


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 209/444 (47%), Gaps = 50/444 (11%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           S +  +D   + E ++++ N +  ME +L   G+ L++  +   L R +   KIA  FF 
Sbjct: 32  SLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALSFFH 91

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
           ++    + +     YNL+IDILS    K +QF +   ++  M +NN        L++I +
Sbjct: 92  YSLSLPSSSVNTTTYNLIIDILS----KVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRR 147

Query: 164 QYTEKIKVKTQPEINALN----------------LLLDALCKCGLVDYAETICKRVKNKV 207
             +      T+  I A +                 LLD LCK G +  A  +  + K + 
Sbjct: 148 LISAGF---TRQAIRAFDDMESFIAETVNQTHFCFLLDTLCKYGYIKVAVEVFNKRKFRF 204

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK--------- 246
            PN   Y +L              + + EM +MG   +  TYN  +D  C+         
Sbjct: 205 LPNVRIYTVLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGR 264

Query: 247 -ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
             R + +A  +F+ MR KG     P   +++I++    +  + +     L  M   G  P
Sbjct: 265 FERTIMKADKVFDEMRQKGI---EPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICP 321

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
            V+TY  VL+ +C  G++++A + LE+M   G  P+  TYNCF K     K+ + AL+LY
Sbjct: 322 TVATYTSVLKCLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLY 381

Query: 366 GRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            ++ +   C PSV TYN+L+ M+ +L   +   E W+++   G   D+D+Y +++ GL +
Sbjct: 382 RKIRQENLCDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCE 441

Query: 425 CSKVEEACFLLEEVVNKGLKLPYR 448
             K ++AC    E++ KGL LP +
Sbjct: 442 KQKWQKACQFFVEMIEKGL-LPQK 464



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 24/171 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     +L  LC CG +D AE +                      LE+M++ G +P+ 
Sbjct: 321 PTVATYTSVLKCLCSCGRIDDAEEL----------------------LEQMVRNGVSPNA 358

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN     + + R   E A L  + + +   +  P+  TY I++   ++ +R      +
Sbjct: 359 ATYNCFFKEY-RGRKDPETA-LKLYRKIRQENLCDPSVHTYNILLGMFMKLNRFNIVNEI 416

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
              + +SG  PD+ +Y  ++ G+C   K ++A +F  EM  KG  P   T+
Sbjct: 417 WNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGLLPQKATF 467


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 207/453 (45%), Gaps = 38/453 (8%)

Query: 50  DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ- 108
           D AK    +I +      +E  LD   + +T D    VL+R      +A+RFF WA  Q 
Sbjct: 34  DPAKRLCKLIISCRQASGLEIELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQR 93

Query: 109 --DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
                AH   +++ ++  L+    K +Q++L+  ++  M+R     V V+   +I+++Y 
Sbjct: 94  RGGGCAHTVRSFHTVVASLA----KIRQYQLMWDVVAIMRRQG--VVNVETFGIIMRKYA 147

Query: 167 EKIKVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
              KV                P + A N LL ALCK   V  A+ I +++  +  P+A T
Sbjct: 148 RAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGRFSPDAKT 207

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+IL              +   +M+  G  PD  TY   +D+ CK   V EA  + + M 
Sbjct: 208 YSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMT 267

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           ++G     PT   Y++++       R+E+  +    M   G +PDV  Y  ++   C   
Sbjct: 268 SRGC---QPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVK 324

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K + A++ +++M   G  P+  T+N  L  L      DEA R++ RMI+  C P   TY 
Sbjct: 325 KFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYT 383

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           M+I M+ E    + A + W  M  +     + T+ V+I+GL D  +V +AC LLE+++ K
Sbjct: 384 MMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEK 443

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           G++ P   F      L   G    +  L D M+
Sbjct: 444 GIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMK 476


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 199/432 (46%), Gaps = 38/432 (8%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
             D  KL + +  +SN+  ++E  L+   V ++   V+ VL++      IA  FF WA  
Sbjct: 80  AQDTGKLCKLLCTHSNS--SIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEK 137

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           Q  + +    YN +I+ L     K KQF+++ ++++ M+  +K  +  +   +I ++Y  
Sbjct: 138 QKGFKYSTENYNALIEALG----KIKQFKMIWNLVNDMR--SKGLLTQETFALISRRYAR 191

Query: 168 KIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANT 213
             KVK              QP ++  N LLDALCK   V+ A+ +  ++K+ K +P+  +
Sbjct: 192 ARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKS 251

Query: 214 YNIL----GMQ--------TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y IL    G +           EM   G  PD  TY   I+  CKAR    A +LF  M 
Sbjct: 252 YTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKME 311

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
                   PT   Y  +I  L    R+ E          SG  P+  TY  V+   C + 
Sbjct: 312 ANKCM---PTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSM 368

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY-GRMIEVGCWPSVQTY 380
           ++++AY+ ++EM   G  P   TY+  L  L   +   EA R++ G   E GC PSV TY
Sbjct: 369 RMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTY 428

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            +++ M+      D A   W EM  +G    +  +  +I+ L   +K++EAC    E+++
Sbjct: 429 EIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLD 488

Query: 441 KGLKLPYRKFDS 452
            G++ P   F +
Sbjct: 489 MGIRPPAAMFSN 500



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 127/295 (43%), Gaps = 7/295 (2%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           N  +++L     VD + T+   V  K+  N+    +   +  E+     ++ +N  YN  
Sbjct: 95  NSSIESLLNGASVDVSPTLVLEVLKKLS-NSGVIALSFFRWAEKQKGFKYSTEN--YNAL 151

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I+   K +      +L   MR+KG      T +T+A++     +  +++E       M  
Sbjct: 152 IEALGKIKQFKMIWNLVNDMRSKGLL----TQETFALISRRYARARKVKEAVETFEKMEK 207

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  P +S +  +L+ +C +  VE A +  ++M ++ + PDI +Y   L+     +N   
Sbjct: 208 FGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLR 267

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
              +Y  M + G  P   TY +LI+ + +    D A E +H+M+   C      YC +I+
Sbjct: 268 LDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLIN 327

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           GL    ++ EA    E     G       +++ +        +   +++ D MRK
Sbjct: 328 GLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRK 382



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 52/263 (19%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTY-- 214
           LL + + Y E      +P+     +L++A CK    D A E   K   NK  P  + Y  
Sbjct: 265 LLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCT 324

Query: 215 --NILG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
             N LG        +Q  E     G  P+  TYN  + ++C++  + +A  + + MR  G
Sbjct: 325 LINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCG 384

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTY------------- 310
                P  +TY I++  L++  R +E + +   M +  GC P VSTY             
Sbjct: 385 V---GPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERV 441

Query: 311 ------------KEVLEGM----------CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
                       K VL GM          C   K++EA K+  EM + G  P    ++  
Sbjct: 442 DMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNL 501

Query: 349 LKVLCDNKNGDEALRLYGRMIEV 371
            + L D    D  L L  ++ ++
Sbjct: 502 KQTLLDEGKQDMVLILAQKLDKI 524


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 208/433 (48%), Gaps = 38/433 (8%)

Query: 49  SDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAG 106
           SDV+++ E +  + +S     +  ALD+LGV ++ + V  VL+       +A  FF WA 
Sbjct: 93  SDVSEVAERVCRVVSSQPEPRIASALDALGVNMSPELVAEVLRNLSNAGILALAFFRWAE 152

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
            Q  + +   +++ +I+ L     K KQFRLV S+++ M+   +  +  D   +I+++Y 
Sbjct: 153 RQQGFRYTAESFHNLIEALG----KIKQFRLVWSLVEAMR--CRGLLSKDTFRLIVRRYA 206

Query: 167 EKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK--PNA 211
              KVK              + +++  N L+D L K   V  A  I K +K   +  P+ 
Sbjct: 207 RARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDL 266

Query: 212 NTYNIL----GMQ--------TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            TY +L    G +          +EM+  G  PD   Y T I +FCK+    EA  +F  
Sbjct: 267 KTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFRE 326

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M   G     P+   Y ++I  L   +R++E          SG   +V T   V+   C 
Sbjct: 327 MEANGCM---PSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCR 383

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           + K + A+K ++EM   G  P+  TY+  L+ L  ++  +EA  ++ RM   GC P + T
Sbjct: 384 SSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNT 443

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           Y M++ M+      D A + W +M ++G    +  +  +I+GL   +++EEAC   +E++
Sbjct: 444 YTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEML 503

Query: 440 NKGLKLPYRKFDS 452
           +KG++ P + F +
Sbjct: 504 DKGIRPPGQLFSN 516



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 37/302 (12%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV---------------LLMIL 162
           YN +ID+LS    K+KQ +   ++   MKRN + FVP D+               LLM+ 
Sbjct: 233 YNWLIDVLS----KSKQVKKAHAIFKEMKRNGR-FVP-DLKTYTVLMEGWGHEKDLLMLK 286

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY----NIL 217
             Y E +    +P++ A   L+ + CK G  D A  + + ++ N   P+ + Y    N L
Sbjct: 287 SVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGL 346

Query: 218 GMQ-TLEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
           G +  L+E ++        G   +  T N  +  +C++     A  + + MR  G     
Sbjct: 347 GSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGI---G 403

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P A+TY I++  L+++ ++EE +++   M   GC P ++TY  ++   C   +V+ A K 
Sbjct: 404 PNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKV 463

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++M  KG  P +  ++  +  LC     +EA   +  M++ G  P  Q ++ L     E
Sbjct: 464 WKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALIE 523

Query: 390 LG 391
            G
Sbjct: 524 GG 525



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 17/177 (9%)

Query: 164 QYTEKIKVKTQP-EINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---- 217
           +Y E  K    P E+   N ++ A C+     +A + + +  K  + PNA TY+I+    
Sbjct: 357 KYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYL 416

Query: 218 -GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
              Q +EE       M   G  P   TY   +  FC    V  A  +++ M+ KG     
Sbjct: 417 IKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVL--- 473

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           P    ++ +I  L   +R+EE       M++ G  P    +  + E +   G++  A
Sbjct: 474 PCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALIEGGRISLA 530


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 200/429 (46%), Gaps = 37/429 (8%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           SD+AK    +I +      +E  LD  GV +T +    VL+R      +A+RFF WA  Q
Sbjct: 36  SDLAKRLCKLIISCRKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFFEWARRQ 95

Query: 109 D--NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
                AH   +Y+ ++  L+    K +Q++L+  ++  M++       V+   +I+++Y 
Sbjct: 96  KRGGCAHTVRSYHTVVASLA----KIRQYQLMWDVVAVMRKEG--VANVETFSIIMRKYA 149

Query: 167 EKIKVK-------------TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
              K                   + A N LL ALCK   V  A+ I  ++ N+  P+A T
Sbjct: 150 RAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKT 209

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+IL              +   +M+  G  PD  TY   +D  CK   V EA  + + M 
Sbjct: 210 YSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMS 269

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           ++G     PT   Y++++     + R+E+  +    M   G +PDV  Y  ++   C   
Sbjct: 270 SRGC---QPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVK 326

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K + A++ +++M   G  P+  T+N  L  L      DEA R++  MI+  C P   TY 
Sbjct: 327 KFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIK-RCKPDSDTYT 385

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           M+I M+ E  + + A + W  M  +     + T+ V+I+GL D  +V +AC LLE+++ K
Sbjct: 386 MMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEK 445

Query: 442 GLKLPYRKF 450
           G++ P   F
Sbjct: 446 GIRPPGSTF 454



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 38/310 (12%)

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ------- 164
           AH   A+N ++  L     K+K  R    + D M  NN+ F P      IL +       
Sbjct: 170 AHNLAAFNSLLGALC----KSKNVRKAQEIFDKM--NNR-FSPDAKTYSILLEGWGRAPN 222

Query: 165 -------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
                  Y++ +    QP+I    +++DALCK G V+ A  + + + ++  +P    Y++
Sbjct: 223 LPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSV 282

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             + T  +M + G  PD   YN  +  FCK +    A  + + M   G
Sbjct: 283 LVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHG 342

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP ++T+ I++  L+   + +E + +  +MI   C PD  TY  +++  C   K+E
Sbjct: 343 I---SPNSRTWNIILNTLISLGKDDEAYRVFRNMIKR-CKPDSDTYTMMIKMFCENDKIE 398

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A K  + M  K + P + T++  +  LCD     +A  L   MIE G  P   T+  L 
Sbjct: 399 MALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLR 458

Query: 385 SMYFELGEPD 394
            +  + G  D
Sbjct: 459 QLLLKEGRKD 468


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 194/421 (46%), Gaps = 32/421 (7%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
            SDV K Y  +    +    +E AL+  GV L    +  VL R      + +RFF+WA  
Sbjct: 80  ASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAK 139

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           Q  Y H    Y  M+ ILS    K +QF  V  +++ M++ N   +  ++ +++++++  
Sbjct: 140 QPRYCHSIEVYKSMVKILS----KMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFAS 195

Query: 168 KIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
              VK              +P+      LLDALCK G V  A  + + ++ +   N   +
Sbjct: 196 ADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYF 255

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
             L                L +M + G  PD   Y   +  +  A  + +A DL   MR 
Sbjct: 256 TSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRR 315

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           +G     P A  Y ++I AL + DRMEE   +   M    C  DV TY  ++ G C  GK
Sbjct: 316 RGF---EPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGK 372

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++ Y  L++M  KG  P  +TY   +      ++ +E L L  +M ++   P +  YN+
Sbjct: 373 IDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNV 432

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I +  +LGE   A   W+EM++ G +  VDT+ +MI+GL     + EA    +E+V +G
Sbjct: 433 VIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRG 492

Query: 443 L 443
           L
Sbjct: 493 L 493


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 191/411 (46%), Gaps = 31/411 (7%)

Query: 71  ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
           A+D   V +T   V  +L RF  +   AF FFMW G Q  Y H   +Y+LM+DIL     
Sbjct: 122 AMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILG---- 177

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK-----QYTEKI-------KVKTQPEIN 178
           K KQF L+  +++ M     +   + +  ++ +     ++TE I       +     +  
Sbjct: 178 KFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTK 237

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
           A+N+LLD LCK   V  A  + + ++  + P+ N++N L             + T+EEM 
Sbjct: 238 AMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 297

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G +P   TY + ++ +C  +       L + MR +      P   TY I++ AL +  
Sbjct: 298 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRC---PPNVVTYTILMHALGKAG 354

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  E       +   G  PD S Y  ++  +  AG++E+AY  +EEM   G  P++ T+N
Sbjct: 355 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFN 414

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   CD+   + AL+L  +M E  C P ++TY  L+ +  +             M ++
Sbjct: 415 TLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRK 474

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + D  TY +++  L    KV ++C  LEE+V+KG       FD  + +L
Sbjct: 475 DISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKL 525



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 1/193 (0%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R  E       M   G + D      +L+ +C    V+ A    +E+     PPD
Sbjct: 211 LAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPD 269

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             ++N  +   C  +   EAL     M + G  PSV TY  L+  Y    +    +    
Sbjct: 270 ENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLD 329

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM KR C  +V TY +++  L    +  EA    +++   G+      ++S +  L   G
Sbjct: 330 EMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAG 389

Query: 462 DLGAIHKLSDHMR 474
            L   + + + MR
Sbjct: 390 RLEDAYSVVEEMR 402


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 191/411 (46%), Gaps = 31/411 (7%)

Query: 71  ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
           A+D   V +T   V  +L RF  +   AF FFMW G Q  Y H   +Y+LM+DIL     
Sbjct: 181 AMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILG---- 236

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK-----QYTEKI-------KVKTQPEIN 178
           K KQF L+  +++ M     +   + +  ++ +     ++TE I       +     +  
Sbjct: 237 KFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTK 296

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
           A+N+LLD LCK   V  A  + + ++  + P+ N++N L             + T+EEM 
Sbjct: 297 AMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 356

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G +P   TY + ++ +C  +       L + MR +      P   TY I++ AL +  
Sbjct: 357 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRC---PPNVVTYTILMHALGKAG 413

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  E       +   G  PD S Y  ++  +  AG++E+AY  +EEM   G  P++ T+N
Sbjct: 414 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFN 473

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   CD+   + AL+L  +M E  C P ++TY  L+ +  +             M ++
Sbjct: 474 TLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRK 533

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + D  TY +++  L    KV ++C  LEE+V+KG       FD  + +L
Sbjct: 534 DISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKL 584



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 1/193 (0%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R  E       M   G + D      +L+ +C    V+ A    +E+     PPD
Sbjct: 270 LAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPD 328

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             ++N  +   C  +   EAL     M + G  PSV TY  L+  Y    +    +    
Sbjct: 329 ENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLD 388

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM KR C  +V TY +++  L    +  EA    +++   G+      ++S +  L   G
Sbjct: 389 EMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAG 448

Query: 462 DLGAIHKLSDHMR 474
            L   + + + MR
Sbjct: 449 RLEDAYSVVEEMR 461


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 220/455 (48%), Gaps = 42/455 (9%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK---IAFRFFMWAGHQDNYAHE 114
           II NS +  N++++L S GV L+ D +  VL+R +F       A  FF +   +  + H 
Sbjct: 49  IISNSTSSQNLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHS 108

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
             + + M+ IL     ++++F  +  +L  +KR ++  +    L ++L +  +   V+  
Sbjct: 109 SYSLDTMLYILG----RSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMT 164

Query: 175 PE-------------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GM 219
            E              +  N LL  LC+   +  A  +   +K   +PN  T+NIL  G 
Sbjct: 165 VESFWKFKRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGW 224

Query: 220 QT-------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           ++        EEM ++G  PD  TYN+ ID FCK R + +A  +   MR +      P  
Sbjct: 225 KSSEEAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDIL---PDV 281

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I  L    + ++   +L  M   GC PDV+ Y  V+   C+A +++ AY  + E
Sbjct: 282 ITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAE 341

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M +KG  P+  +YN F +V   + +   +   YGRM++ GC P+ Q+   LI ++    +
Sbjct: 342 MESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEK 401

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA--CFLLEEVVNKGLK---LPY 447
            + A + W++M ++G    +    V++  L D  K+ EA  CFL  ++V KG K   + +
Sbjct: 402 VEMALQLWNDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFL--QMVEKGHKPSNVSF 459

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482
           R+    LM+L+   D  AI  LS+ M  F + + A
Sbjct: 460 RRI-KVLMELANKHD--AIRNLSEKMAIFGSSIRA 491


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 200/424 (47%), Gaps = 35/424 (8%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V ++   + D+ N  D++E  L +    ++++ V  VL+R +     A RFF+WA    +
Sbjct: 38  VNEISRVLSDHRNPKDDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWAKRIPD 97

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-- 168
           + H   +Y+++++IL  +K    QF L+   L   +  N   +   V  ++ + Y+    
Sbjct: 98  FEHSLESYHILVEILGCSK----QFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANL 153

Query: 169 -----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI 216
                      ++   +P ++ L+ LL +LC    V++A+    + K   + P+A TY+I
Sbjct: 154 PSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAKTYSI 213

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L              +  +EM++     D   YN  +D  CK+  V  A  +F+ M   G
Sbjct: 214 LVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEM---G 270

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
           +    P A ++AI I +      +   + +L  M     +P+V T+  +++ +C   KV+
Sbjct: 271 NLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVD 330

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +AY  L+EM  KG  PD  TYN  +   CD+   + A +L  RM    C P   TYNM++
Sbjct: 331 DAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVL 390

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEVVNKGL 443
            +   +G  D   E W  M +R     V TY VMI GL     K+EEAC   E ++++G+
Sbjct: 391 KLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGI 450

Query: 444 KLPY 447
             PY
Sbjct: 451 P-PY 453



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 103/230 (44%), Gaps = 17/230 (7%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEM 225
           A N LLDALCK G VD A  + + + N  +KP+A ++ I               Q L+ M
Sbjct: 245 AYNALLDALCKSGDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRM 304

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            +    P+ +T+N  I T CK   V +A  L + M  KG+   +P   TY  ++     +
Sbjct: 305 KRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGA---NPDTWTYNSIMAYHCDH 361

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             +     LL  M  + CLPD  TY  VL+ +   G+ +   +  E M  + + P + TY
Sbjct: 362 CEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATY 421

Query: 346 NCFLKVLCDNKNG-DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
              +  L   K   +EA R +  MI+ G  P   T  ML +     G+ D
Sbjct: 422 TVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMD 471



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V      A    EA +    M   G  P +   +  L  LCD K+ + A   + +    G
Sbjct: 144 VFRAYSRANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFG 203

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             PS +TY++L+  +  + +  GA + + EM +  C  D+  Y  ++D L     V+ A 
Sbjct: 204 IVPSAKTYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAY 263

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            + +E+ N GLK     F  ++       D+ + +++ D M+++
Sbjct: 264 KMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRY 307


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 191/411 (46%), Gaps = 31/411 (7%)

Query: 71   ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
            A+D   V +T   V  +L RF  +   AF FFMW G Q  Y H   +Y+LM+DIL     
Sbjct: 1401 AMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILG---- 1456

Query: 131  KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK-----QYTEKI-------KVKTQPEIN 178
            K KQF L+  +++ M     +   + +  ++ +     ++TE I       +     +  
Sbjct: 1457 KFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTK 1516

Query: 179  ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
            A+N+LLD LCK   V  A  + + ++  + P+ N++N L             + T+EEM 
Sbjct: 1517 AMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 1576

Query: 227  QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
            Q G +P   TY + ++ +C  +       L + MR +      P   TY I++ AL +  
Sbjct: 1577 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRC---PPNVVTYTILMHALGKAG 1633

Query: 287  RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            R  E       +   G  PD S Y  ++  +  AG++E+AY  +EEM   G  P++ T+N
Sbjct: 1634 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFN 1693

Query: 347  CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
              +   CD+   + AL+L  +M E  C P ++TY  L+ +  +             M ++
Sbjct: 1694 TLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRK 1753

Query: 407  GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
              + D  TY +++  L    KV ++C  LEE+V+KG       FD  + +L
Sbjct: 1754 DISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKL 1804



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 1/193 (0%)

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            L    R  E       M   G + D      +L+ +C    V+ A    +E+     PPD
Sbjct: 1490 LAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPD 1548

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              ++N  +   C  +   EAL     M + G  PSV TY  L+  Y    +    +    
Sbjct: 1549 ENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLD 1608

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            EM KR C  +V TY +++  L    +  EA    +++   G+      ++S +  L   G
Sbjct: 1609 EMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAG 1668

Query: 462  DLGAIHKLSDHMR 474
             L   + + + MR
Sbjct: 1669 RLEDAYSVVEEMR 1681


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 188/411 (45%), Gaps = 31/411 (7%)

Query: 71   ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
            A+D   V +T   V  +L RF  +   AF FFMW G Q  Y H   +Y+LM+DIL     
Sbjct: 1442 AMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILG---- 1497

Query: 131  KAKQFRLVCSMLDYMKRNNKVF-----VPVDVLLMILKQYTEKI-------KVKTQPEIN 178
            K KQF L+  +++ M     +        V   L    ++TE I       +     +  
Sbjct: 1498 KFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTK 1557

Query: 179  ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
            A+N+LLD LCK   V  A  + + ++  + P+ N++N L             + T+EEM 
Sbjct: 1558 AMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMK 1617

Query: 227  QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
            Q G +P   TY + ++ +C  +       L + MR +      P   TY I++ AL +  
Sbjct: 1618 QHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRC---PPNVVTYTILMHALGKAG 1674

Query: 287  RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            R  E       +   G  PD S Y  ++  +  AG++E+AY  +EEM   G  P++ T+N
Sbjct: 1675 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFN 1734

Query: 347  CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
              +   CD+   + AL+L  +M E  C P ++TY  L+ +  +             M ++
Sbjct: 1735 TLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRK 1794

Query: 407  GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
              + D  TY +++  L    KV ++C  LEE+V+KG       FD  + +L
Sbjct: 1795 DISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKL 1845



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 1/193 (0%)

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            L    R  E       M   G + D      +L+ +C    V+ A    +E+     PPD
Sbjct: 1531 LAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPD 1589

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              ++N  +   C  +   EAL     M + G  PSV TY  L+  Y    +    +    
Sbjct: 1590 ENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLD 1649

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            EM KR C  +V TY +++  L    +  EA    +++   G+      ++S +  L   G
Sbjct: 1650 EMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAG 1709

Query: 462  DLGAIHKLSDHMR 474
             L   + + + MR
Sbjct: 1710 RLEDAYSVVEEMR 1722


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 192/421 (45%), Gaps = 32/421 (7%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
            SDV K Y  +    +    +E AL+  GV L    +  VL R      + +RFF+WA  
Sbjct: 81  ASDVEKAYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAK 140

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           Q  Y H    Y  M+ ILS    K +QF  V  +++ M++ N   +  ++ +++++++  
Sbjct: 141 QPRYCHSIEVYKSMVKILS----KMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFAS 196

Query: 168 KIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
              VK              +P+      LLDALCK G V  A  + + ++ +   N   +
Sbjct: 197 ADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLRFPVNLRYF 256

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
             L                L +M + G  PD   Y   +  +  A  + +A DL + MR 
Sbjct: 257 TSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRR 316

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           +G     P A  Y ++I AL + DRMEE   +   M    C  DV TY  ++ G C  GK
Sbjct: 317 RGF---EPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGK 373

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++ Y  L++M  KG  P  +TY   +      +   E L L  +M ++   P +  YN+
Sbjct: 374 IDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNV 433

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I +  +LGE   A   W+EM+  G +   DT+ ++I+GL     + EAC   +E+V +G
Sbjct: 434 VIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARG 493

Query: 443 L 443
           L
Sbjct: 494 L 494


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 183/388 (47%), Gaps = 25/388 (6%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
            SDV K Y  +    +    +E AL+  GV L    +  VL R      + +RFF+WA  
Sbjct: 73  ASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAK 132

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           Q  Y H    Y  M+ ILS    K +QF  V  +++ M++ N   +  ++ +++++++  
Sbjct: 133 QPRYCHSIEVYKSMVKILS----KMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFAS 188

Query: 168 KIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
              VK              +P+      LLDALCK G V  A  + + ++ +V       
Sbjct: 189 ADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRVGKMMEAK 248

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
            +L      +M + G  PD   Y   +  +  A  + +A DL   MR +G     P A  
Sbjct: 249 YVLV-----QMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGF---EPNANC 300

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y ++I AL + DRMEE   +   M    C  DV TY  ++ G C  GK+++ Y  L++M 
Sbjct: 301 YTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMI 360

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P  +TY   +      ++ +E L L  +M ++   P +  YN++I +  +LGE  
Sbjct: 361 KKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVK 420

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            A   W+EM++ G +  VDT+ +MI+GL
Sbjct: 421 EAVRLWNEMEENGLSPGVDTFVIMINGL 448


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 197/426 (46%), Gaps = 39/426 (9%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V ++   + D+ +   ++E +L      ++TD V  VL+R       A RFF+WA     
Sbjct: 43  VNEISRIVSDHRHPRHDLELSLTPFSTQISTDLVEQVLKRCNHLGFSAHRFFLWAKSIPG 102

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-------DYMKRNNKVFVPV-------D 156
           + H   +++++++IL     ++KQF ++   L          K  N++F  +       D
Sbjct: 103 FQHSVQSFHILVEILG----RSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRAD 158

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
           +    ++ +    +   +P I  ++LLL  LCK   V  A+    +VK+       TY+I
Sbjct: 159 LPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTTKTYSI 218

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L              +  + M++ G   D   YN  ++  CK   V EA D    M +K 
Sbjct: 219 LINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKK 278

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P A TY+I I +    + +   F +L  M     LP+V TY  +++ +C   KVE
Sbjct: 279 V---EPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVE 335

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EAY+ L+EM + G  PD  +YN      CD+   + AL+L  RM +  C+P   TYNM++
Sbjct: 336 EAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVL 395

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNK 441
            +   +G  D A E W  M  +     V TY VMI GL  C    K+EEAC     ++++
Sbjct: 396 KLLIRIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGL--CKKKGKLEEACKYFAMMIDE 453

Query: 442 GLKLPY 447
           G+  PY
Sbjct: 454 GIP-PY 458


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 191/426 (44%), Gaps = 40/426 (9%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V  L   + D      ++  ALD     LT  +   VL+R +     + RFF++A     
Sbjct: 50  VGALCRVLSDFRGPRHDLRAALDGFAPRLTPAAAADVLRRCRNLPVPSLRFFLFAAALPG 109

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT---- 166
           + H P +    + IL+ +   A+ F L+ S+L  + R     +  D+  ++ + Y     
Sbjct: 110 FTHLPES----LLILAGSLAGARLFPLLRSLLSDLPRPA---LSRDLFPLLFRAYARAGL 162

Query: 167 --EKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
             + I+  +        P +  L+ LL  L   GLV++AE   +    +   +A TY IL
Sbjct: 163 PDDAIRAFSSMERFGFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPIQFDVSAKTYTIL 222

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKG 264
                         +  +EMI+ G  PD   YN  ID  C+   V  A + L +  R++G
Sbjct: 223 ISGWAVVAKPEKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRSRG 282

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               +P A TY   + +   +        +L  M      P+V TY  V+  +C  G+V+
Sbjct: 283 L---APDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEVD 339

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EAY  L EM   G  PD+ +YN  L   C  K  ++ALRL  RM E  C P+  +YNM++
Sbjct: 340 EAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMIL 399

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVVNKG 442
            M   +G  D A E W  M+KRG      TY VMI GL  C K   EEAC     +V+ G
Sbjct: 400 KMLIAIGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGL-SCKKGRAEEACSYFLRMVDDG 458

Query: 443 LKLPYR 448
           +  PY+
Sbjct: 459 IP-PYQ 463


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 198/416 (47%), Gaps = 23/416 (5%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           VSD+ ++ E +  +    D++ +AL+  GV  T + +  +L RF  +   A   F WA H
Sbjct: 98  VSDIDRVSEILKKHYPCTDSVVQALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWAKH 157

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM--------LDYMKRNNKVFVPVDVLL 159
           Q  Y H P  Y+LM+DIL   K  +  + LV  M        L  MK+  +         
Sbjct: 158 QTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMENLEGYVSLVTMKKVMRRLARAGNFQ 217

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
             ++ +    K+  + +I ALN+L+DAL K G V++A +     K+ +  +  ++NIL  
Sbjct: 218 DAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLH 277

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       + ++EM + G  P+  +Y   I+ +CK +       +F  M+ K    
Sbjct: 278 GYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSC-- 335

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY I + AL +  ++ +   +   M ++ C+PD S Y  ++  +  +G++++A+
Sbjct: 336 -KPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAW 394

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              E+M  +G  PD++TYN  +   C +   + AL+L  RM E  C P +QTY  L+ M 
Sbjct: 395 DVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMC 454

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                        + M K   + D+ TY +++ GL    K+E AC   EE+V KGL
Sbjct: 455 CRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGL 510



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 16/204 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------ 217
           ++E  +   +P +    + + AL K   V+ A  + + +K N   P+A+ Y+ L      
Sbjct: 327 FSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQ 386

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                      E+M + G +PD  TYNT I + C      E  +  + +R        P 
Sbjct: 387 SGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTH---LEEENALKLLRRMEEDSCKPD 443

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            +TYA ++    +  R++    LL HM  +    D+ TY  ++ G+C +GK+E A  F E
Sbjct: 444 IQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFE 503

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDN 355
           EM  KG  P   TY   ++ L  N
Sbjct: 504 EMVMKGLIPRDRTYKMLVEELEQN 527


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 15/315 (4%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL----------- 217
            ++  P+    + L+D LCKCG +D A ++    +     PN  TYN L           
Sbjct: 174 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 233

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST--ISSPTAKT 274
                +E M+  G  PD  TY+  +D FCKA  V EA +L   M ++G T  +  P   T
Sbjct: 234 RAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVT 293

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           + I+I    +    E+  +L   M+     PDV T+  +++G+C AG+VE A   L+ MG
Sbjct: 294 FNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMG 353

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           N G PP++VTYN  +  LC +   +EA +    M+  GC P   TY  L+         D
Sbjct: 354 NLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 413

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A +   E+   G   D  TY +++DGL+   K E+A  +LEE+V KG +     F +  
Sbjct: 414 DALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACF 473

Query: 455 MQLSVIGDLGAIHKL 469
             L   G+L    +L
Sbjct: 474 SGLHRSGNLAGTMEL 488



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 153/357 (42%), Gaps = 61/357 (17%)

Query: 181 NLLLDALCKCGLVDYAETICKR--VKNKVKPNANTYNIL------------GMQTLEEMI 226
           N++L +LC+ G    A  I +    ++ V P   TYN +            GM+  EE++
Sbjct: 5   NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + GH PD  TYNT ID+ CKA  + EA  L   M ++G     P   TY+++I  L +  
Sbjct: 65  ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCV---PNVVTYSVLINGLCKVG 121

Query: 287 RMEECFSLLGHMINSGC---------------------------------------LPDV 307
           R++E   L+  M    C                                        PD 
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 181

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            T+  +++G+C  G+++EA    ++M   GY P+++TYN  +  LC     + A  +   
Sbjct: 182 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 241

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV-----DTYCVMIDGL 422
           M++ G  P V TY++L+  + +    D A E  H M  RGC  +V      T+ ++I G 
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGA 301

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
                 E+A  L EE+V K L+     F + +  L   G + A   + D M     P
Sbjct: 302 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 358



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 21/281 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA----ETICKR--VKNKVKPNANTYNIL----------- 217
           P++   ++L+DA CK   VD A      +  R    N + P+  T+NIL           
Sbjct: 249 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFE 308

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                 EEM+     PD  T+   ID  CKA  V  A D+ + M   G     P   TY 
Sbjct: 309 QASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV---PPNVVTYN 365

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L ++ R+EE    L  M++SGC+PD  TY  ++  +C A + ++A + + E+ + 
Sbjct: 366 ALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSF 425

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+ PD VTYN  +  L  +   ++A+ +   M+  G  P   T+    S     G   G 
Sbjct: 426 GWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGT 485

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            E    +  +G   D  T   ++D +    K+++   +++E
Sbjct: 486 MELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKE 526



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 24/219 (10%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN  + + C+A     A ++F     +     +PT  TY  +I  L +++ +     L  
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGV--APTIVTYNTIINGLCKSNDLGAGMELFE 61

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            ++  G  PDV TY  +++ +C AG +EEA +   +M ++G  P++VTY+  +  LC   
Sbjct: 62  ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 357 NGDEALRLYGRMIEVGC--WPSVQTYNMLI------SMYFELGE-----PDGAFETWHEM 403
             DEA  L   M    C   P++ TYN  +      SM  E  E      DG+       
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV---- 177

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
                + D  T+  +IDGL  C +++EAC + ++++  G
Sbjct: 178 -----SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGG 211



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           V+ Y  VL+ +C AG    A + F  EM   G  P IVTYN  +  LC + +    + L+
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             ++E G  P V TYN LI    + G+ + A     +M  RGC  +V TY V+I+GL   
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 426 SKVEEACFLLEEVVNK 441
            +++EA  L++E+  K
Sbjct: 121 GRIDEARELIQEMTRK 136



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 342 IVTYNCFLKVLCDNKNGDEALRLY-GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +  YN  L+ LC   +   AL ++ G M   G  P++ TYN +I+   +  +     E +
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            E+ +RG   DV TY  +ID L     +EEA  L  ++ ++G       +   +  L  +
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 461 GDLGAIHKLSDHMRK 475
           G +    +L   M +
Sbjct: 121 GRIDEARELIQEMTR 135


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 202/439 (46%), Gaps = 34/439 (7%)

Query: 71  ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
           +L +  V ++ + VV VL +      +A  FF WA  Q  + H    ++ +I+ L     
Sbjct: 76  SLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALG---- 131

Query: 131 KAKQFRLVCSMLDYMKRNN-----------KVFVPVDVLLMILKQYTEKIKVKTQPEINA 179
           K +QF+++ +++D MK+             + +V   V+   LK +    K   +P+I+ 
Sbjct: 132 KIRQFKMIWNLVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISD 191

Query: 180 LNLLLDALCKCGL-VDYAETICKRVKN-KVKPNANTYNIL-----GMQTL-------EEM 225
            N L+D LCK    V+ A+ +  +++   ++PN  +Y IL       Q L        EM
Sbjct: 192 FNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREM 251

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
              G  PD  TY   I+ +CKA+   EA  ++  M +K     +P+   Y   I  L   
Sbjct: 252 KDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNV---NPSPHIYCTFITGLGNG 308

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            RM+E F        SG  P+  TY  V+   C + ++++AY+ + EM   G  P+  TY
Sbjct: 309 SRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTY 368

Query: 346 NCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           +  L  L       EA  ++ RM  E GC PSV TY +++ M+    + D A   W+EM 
Sbjct: 369 DIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMK 428

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            +G    +  +  +I  L   +K+++AC   +++++ G++     F ++   L   G   
Sbjct: 429 DKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMEN 488

Query: 465 AIHKLSDHMRKFYN-PVIA 482
            +   +  + K  N P+IA
Sbjct: 489 TVIHFAKKVDKLRNTPLIA 507


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 201/428 (46%), Gaps = 41/428 (9%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           V D+ K+ + +     +++++ K L    V +T   V+ VL+RF      A+ FF+WA  
Sbjct: 99  VEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANS 158

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-FVPVDVLLMILKQYT 166
           Q  Y H    YN M+D+L     K + F L+  +++ M +N +   V +D +  ++++  
Sbjct: 159 QTGYVHSGHTYNAMVDVLG----KCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLA 214

Query: 167 EKIK----------------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
           +  K                VKT  +  A+N L+DAL K   +++A  +  ++ + +KP+
Sbjct: 215 KSGKYNKAVDAFLEMEKSYGVKT--DTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPD 272

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
           A T+NIL                ++ M      PD  TY + ++ +CK        ++ E
Sbjct: 273 ARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLE 332

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            MR  G    +P   TY I++ +L ++ ++ E   +   M   GC+PD   Y  ++  + 
Sbjct: 333 EMRENG---CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILS 389

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE---VGCWP 375
             G+ ++A +  E+M N+G   D++ YN  +     +   + ALRL  RM +     C P
Sbjct: 390 KTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSP 449

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +V+TY  L+ M     +        H M K   + DV TY ++I GL    KVEEAC   
Sbjct: 450 NVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFF 509

Query: 436 EEVVNKGL 443
           EE V KG+
Sbjct: 510 EEAVRKGM 517



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 118/264 (44%), Gaps = 23/264 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           N ++D L KC   D    +     N++  N  +  ++ + T+ ++  M     +  YN A
Sbjct: 170 NAMVDVLGKCRNFDLMWELV----NEMNKNEES-KLVTLDTMSKV--MRRLAKSGKYNKA 222

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +D F             E  ++ G  + + T    ++M  ALV+ + +E    +   + +
Sbjct: 223 VDAF------------LEMEKSYG--VKTDTIAMNSLMD-ALVKENSIEHAHEVFLKLFD 267

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +   PD  T+  ++ G C A K ++A   ++ M    + PD+VTY  F++  C   +   
Sbjct: 268 T-IKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRR 326

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
              +   M E GC P+V TY +++    +  +   A   + +M + GC  D   Y  +I 
Sbjct: 327 VNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIH 386

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
            L    + ++A  + E++ N+G++
Sbjct: 387 ILSKTGRFKDAAEIFEDMTNQGVR 410



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 15/281 (5%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+     TYN  +D   K R      +L   M  K       T  T + ++  L ++ 
Sbjct: 159 QTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEM-NKNEESKLVTLDTMSKVMRRLAKSG 217

Query: 287 RMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +  +       M  S G   D      +++ +     +E A++   ++ +    PD  T+
Sbjct: 218 KYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDT-IKPDARTF 276

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +   C  +  D+A  +   M      P V TY   +  Y + G+     E   EM +
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRE 336

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ-LSVIGDLG 464
            GC  +V TY +++  L    +V EA  + E++   G  +P  KF S L+  LS  G   
Sbjct: 337 NGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGC-VPDAKFYSSLIHILSKTGRFK 395

Query: 465 AIHKLSDHMRK--------FYNPVIARRLALNQKRVRISLR 497
              ++ + M           YN +I+   AL+  R  ++LR
Sbjct: 396 DAAEIFEDMTNQGVRRDVLVYNTMIS--AALHHSRDEMALR 434


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 159/312 (50%), Gaps = 18/312 (5%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM------------QTLEE 224
           + + N LL AL + GL   A  +  R++++  P+  +Y  L +            +   E
Sbjct: 36  VESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNE 95

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M++ G  PD   +NT I+   + +   EA  +FE M+ KG    +P   TY ++I    +
Sbjct: 96  MLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP---APNVWTYTMLIRDHCK 152

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             +M+        M + GC PDV+TY  +L G   A +++     LEEM  KG PPD  T
Sbjct: 153 RGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRT 212

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD--GAFETWHE 402
           YN  +K+L +    D+A R+Y +MI+ G  P++ TYNM++  YF LG  +       W E
Sbjct: 213 YNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF-LGGRNYMMGCAVWEE 271

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M ++G   DV++Y V I+G     + EEAC  +EE++ KG+K P   ++ +    S  G 
Sbjct: 272 MHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGK 331

Query: 463 LGAIHKLSDHMR 474
              +++L+  ++
Sbjct: 332 PDILYELAQKVK 343



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +  +K  ++    AG+++ A    E M   G+   + ++NC L  L     G EA +++ 
Sbjct: 1   MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFD 60

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           RM +    P +++Y  L+  +        A   W+EM + G   DV  +  MI+GL    
Sbjct: 61  RMRDRYA-PDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQ 119

Query: 427 KVEEACFLLEEVVNKG 442
           +  EA  + E +  KG
Sbjct: 120 RRPEAVKMFELMKAKG 135


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 197/423 (46%), Gaps = 33/423 (7%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           +D   V ++   V  VL RF  +   AF FFMWAG Q+ Y H   +Y++M+DIL     K
Sbjct: 154 MDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQEGYCHCADSYDMMVDILG----K 209

Query: 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ------YTEKI-------KVKTQPEIN 178
            KQF L+C ++  M     + V +  +  ++++      +++ I       +     +  
Sbjct: 210 FKQFDLMCGLIGQMHEIGGL-VSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVAKDTK 268

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
           A+N+LLD LCK   V  A    + +K  + P+ +++N L              +T++EM 
Sbjct: 269 AMNVLLDTLCKERSVKRARGAFQALKGTIPPDESSFNTLVHGWCKARMLKEARETMKEME 328

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G +P   TY   I+ +C  +       + + M TKG T   P   TY I++ AL +  
Sbjct: 329 RHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCT---PNIITYTIVMHALGKAG 385

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R +E       +   GC  D S Y  ++  +C AG++++A   +EEM   G  P++ T+N
Sbjct: 386 RTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFN 445

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   CD+   + AL+L  +M E  C P ++TY  L+ +                M ++
Sbjct: 446 TLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRK 505

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
               D  TY +++  L    ++ ++C  LEE+V KG       FD  L +L  +  L A+
Sbjct: 506 DITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATFDLVLEKLKNMHMLSAV 565

Query: 467 HKL 469
            K+
Sbjct: 566 RKI 568


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 197/456 (43%), Gaps = 45/456 (9%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V  L   + D      ++  AL      LT      VL+R +     + RFF++AG    
Sbjct: 65  VGSLCRVLSDFRGPRHDLPAALRGFAPWLTPGDAAAVLRRCRHLPLPSLRFFLFAGELPG 124

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN--------------NKVFVPVD 156
           ++H P +    + +L+++   A+ F L+ S+L  +  +              ++  +P D
Sbjct: 125 FSHHPDS----LLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLFRAYSRARLPED 180

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
            +    + ++        P I   + LL AL + GLV+Y E   +    +   +A  Y I
Sbjct: 181 AI----RAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESSAQFDVSAKAYTI 236

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L                 +EM++ G   D   YN  ID  C+   +T A +    M+   
Sbjct: 237 LISGWAVVKKPENARSLFDEMVERGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSH 296

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
             +  P A TY   + A   +  +     +L  M      P+V TY  V+  +C  G++ 
Sbjct: 297 GLV--PNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEIN 354

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EAY  L+E+  +G  PD+ +YN  L   C  K  ++ALRL  RM +  C P   +YNML+
Sbjct: 355 EAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLL 414

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD-CSKVEEACFLLEEVVNKGL 443
            M   +G  D A E W  M+KRG      TY VMI GL     + E+AC     +V++G+
Sbjct: 415 KMLIGVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGI 474

Query: 444 KLPYRK----FDSYLMQLSVIGDLGAIHKLSDHMRK 475
             PY+         L+ L +   LG    L+D MR+
Sbjct: 475 P-PYQATCEVLRDRLLMLGLRDQLGV---LTDRMRR 506


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 202/443 (45%), Gaps = 37/443 (8%)

Query: 50  DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD 109
           + A L   I+ +SN    + + L S  +  T   V  +L+R   +   A +FF    H  
Sbjct: 37  EAAALATLILTSSNP-QALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHP 95

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
           +Y+H P +Y+  IDI +  +       LV     Y  R+ ++        +I ++Y    
Sbjct: 96  SYSHHPSSYDHAIDISARLRDSPSLRSLV-----YRMRSARLGPTPKTFAIIAERYASAG 150

Query: 170 KVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
           K                  ++ + N +LD LCK   V+ A  + K  K K + +  +YN+
Sbjct: 151 KPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNV 210

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++ L+EM++ G  P+  +YNT +  + +A  + EA D F  M+ + 
Sbjct: 211 MVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRD 270

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
             I      TY  +I        ++    +   M+  G LP V+TY   ++ +C    V+
Sbjct: 271 CEID---VITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVD 327

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A    EEM  KGY P+ +TYN  ++ LC     + A+   GRM + GC P+VQTYN++I
Sbjct: 328 NAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVI 387

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNK 441
             + + GE D A + + +M    C  ++DTY ++I  +F   K ++   A  LL E+V++
Sbjct: 388 RYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDR 447

Query: 442 GLKLPYRKFDSYLMQLSVIGDLG 464
           G       F+  L  L + G+ G
Sbjct: 448 GFVPRKFTFNRVLNGLLLTGNQG 470



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 3/224 (1%)

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A   F  +    S    P++  +AI I A +++       SL+  M ++   P   T+ 
Sbjct: 83  KALQFFNLLSHHPSYSHHPSSYDHAIDISARLRDS--PSLRSLVYRMRSARLGPTPKTFA 140

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            + E    AGK   A K    M   G   D+ ++N  L VLC +K  + A  L+ ++ + 
Sbjct: 141 IIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLF-KVFKG 199

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                  +YN++++ +  +   + A E   EM KRG   ++ +Y  M+ G F   ++ EA
Sbjct: 200 KFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEA 259

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
                E+  +  ++    + + +    V G++    K+ D M K
Sbjct: 260 WDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVK 303


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 194/397 (48%), Gaps = 47/397 (11%)

Query: 58   IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
            I+++  A++  E AL+     LTT  V  VLQ  +  +  A  FF WA  Q+ Y H+   
Sbjct: 788  ILNSRFAWEYAETALERFTGKLTTTVVGKVLQGVRNGDA-ALGFFDWATSQEGYNHDTYT 846

Query: 118  YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
             N ++  L          RL        KR      P D L +       + K+   P +
Sbjct: 847  CNCLLQAL---------LRL--------KR------PKDALQVY------RNKLCCSPNM 877

Query: 178  NALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEE 224
                +L+  LC+ G +  A  + K + ++ V  N   +N++             ++  +E
Sbjct: 878  FTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKE 937

Query: 225  MIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M + G  P D FTY+T +D+  K+  V +A  L E M +KG    SP   TY+ ++  L 
Sbjct: 938  MEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGC---SPNVVTYSSLLHGLC 994

Query: 284  QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            +  +++E  +LL  M  SGC P++ TY  +++G C  G+++EAY  LEEM + G  P++V
Sbjct: 995  KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVV 1054

Query: 344  TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            TY   L   C     ++A+ L   M+E G  P++ TYN L+ M+ +  E + A +    M
Sbjct: 1055 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM 1114

Query: 404  DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             ++GC  +V +Y  +I GL   +KV E   LLE++++
Sbjct: 1115 IQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS 1151



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 183/401 (45%), Gaps = 24/401 (5%)

Query: 56  EAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEP 115
           E I+  ++    +  ALD     L+ + V  VLQR   +   A  FF WA  +D Y HE 
Sbjct: 68  ERIVQGASDEQALRVALDEYRGQLSPEIVGKVLQRL-IDPGAALVFFEWAETRDGYQHEI 126

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTE 167
              N ++++L      ++   L  S ++     + V        F+    +L   + + E
Sbjct: 127 FCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDE 186

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------- 217
             +   +        +L  LC  G    A    + +     P++ TYN +          
Sbjct: 187 MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 246

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ LEEM+  G AP+ F+YNT +  FCKA  V  A  L E M T+G     P   +Y
Sbjct: 247 DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGC---PPDVVSY 303

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L + D+++E   ++  MI  GC P+V TY  +++G C  G ++ A + + +M  
Sbjct: 304 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 363

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +GY P+ +TYN  + V C   + + A ++   MI+ GC P    Y+ +IS + + G+   
Sbjct: 364 RGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLRE 423

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           A +   +M +RGC  DV     +ID L   + ++ A  LL 
Sbjct: 424 AHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLR 464



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 151/313 (48%), Gaps = 45/313 (14%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           I+   QP +     L+D  C+ G +D A E + K  +   +PNA TYN +          
Sbjct: 327 IQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDM 386

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------STI 267
               Q L+ MIQ G  PD   Y+T I  FCKA  + EA DL E M  +G        ST+
Sbjct: 387 ERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTL 446

Query: 268 ------------------------SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
                                    +P    Y+I+I AL +  R+ E  S L  M+ + C
Sbjct: 447 IDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRC 506

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PDV TY  V++G+C + ++ +A+   + M   G  PD+VTY+  +   C + N D A +
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFK 566

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +  RM E  C P V TY+ LI+   + G  D AF+ + EM   GCA ++ TY  +IDGL 
Sbjct: 567 MLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLC 626

Query: 424 DCSKVEEACFLLE 436
             +KVE+A  +LE
Sbjct: 627 KINKVEQAAEMLE 639



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 137/286 (47%), Gaps = 23/286 (8%)

Query: 175  PEINALNLLLDALCKCGLVDYAETICKRVKNKVK----PNANTYNIL------------G 218
            P +   N LLD  CK    D  E  C+ + + ++    PN  +YN +            G
Sbjct: 1086 PNLFTYNSLLDMFCK---KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 1142

Query: 219  MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +  LE+M+     PD  T+NT ID  CK   V  A +LF  ++  G T   P   TY  +
Sbjct: 1143 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCT---PNLVTYNSL 1199

Query: 279  IVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            +  L ++ R ++   LL  M    GC PD+ TY  V++G+C + +V+ AYK   +M + G
Sbjct: 1200 VHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDG 1259

Query: 338  YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              PD VTY+  +  LC  +  DEA  +   M++ G  P   TY  LI  + + G  D A 
Sbjct: 1260 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 1319

Query: 398  ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            E    +  +G   DV T+ + ID L    ++ +A  LLE ++  GL
Sbjct: 1320 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGL 1365



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 149/323 (46%), Gaps = 18/323 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
           Q EI   N LL+ L K      A  + + R++ +   +  TY+ L              +
Sbjct: 123 QHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYE 182

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM + G       + + +   C A   ++A   F  M    S    P + TY  MI 
Sbjct: 183 LFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM----SKTCPPDSVTYNTMIN 238

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++DR+++   LL  M+++G  P+V +Y  VL G C A +VE A   LE+M  +G PP
Sbjct: 239 GLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPP 298

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+V+Y   +  LC     DEA R+  +MI+ GC P+V TY  L+  +  +G+ DGA E  
Sbjct: 299 DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELV 358

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +M +RG   +  TY  ++      + +E A  +L+ ++  G       + + +      
Sbjct: 359 RKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKA 418

Query: 461 GDLGAIHKLSDHM-RKFYNPVIA 482
           G L   H L + M R+   P +A
Sbjct: 419 GKLREAHDLLEQMIRRGCRPDVA 441



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 159/338 (47%), Gaps = 26/338 (7%)

Query: 175  PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
            P+I   N ++DA+CK   VD A  +   ++ +   PN  TYN L                
Sbjct: 1156 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 1215

Query: 222  LEEMIQ-MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM +  G +PD  TYNT ID  CK++ V  A  LF  M + G    +P   TY+I+I 
Sbjct: 1216 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL---APDDVTYSIVIS 1272

Query: 281  ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            +L +   M+E  ++L  M+ +G  P   TY  +++G C  G +++A + L+ + +KG  P
Sbjct: 1273 SLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYP 1332

Query: 341  DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            D+VT++ F+  L       +A  L   M+  G  P   TYN L+  + +    + A + +
Sbjct: 1333 DVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLF 1392

Query: 401  HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV----VNKGLKLPYRKFDSYLMQ 456
              M + GC  D  TY  ++  L D    ++   LL EV    V+ G KL +         
Sbjct: 1393 EVMRQCGCEPDNATYTTLVGHLVDKKSYKD---LLAEVSKSMVDTGFKLNHELSSKLEAS 1449

Query: 457  LSVIGDLGAIHKLSDHMRKFYNPVIARRL--ALNQKRV 492
            + V  D+     + D   K  +P  AR++   ++Q+ V
Sbjct: 1450 IEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNV 1487



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 143/355 (40%), Gaps = 46/355 (12%)

Query: 116  LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK------- 168
            + YN +ID L  +K   + ++L   ML      + V   + +  +   ++ ++       
Sbjct: 1230 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 1289

Query: 169  -IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL--------- 217
             +K    P       L+D  CK G +D A  I + + +K   P+  T++I          
Sbjct: 1290 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 1349

Query: 218  ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                 + LE M++ G  PD  TYNT +  FC A +  +A DLFE MR  G     P   T
Sbjct: 1350 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCG---CEPDNAT 1406

Query: 275  YAIMIVALVQNDRMEECFS-----------LLGHMINSGCLPDVSTYKEVLEGMCLA--- 320
            Y  ++  LV     ++  +            L H ++S     +    +V  G  +    
Sbjct: 1407 YTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMF 1466

Query: 321  ---GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
               G  ++A K  E M  +    ++V ++  L V   +K  ++A  L+  M   G  P  
Sbjct: 1467 GKCGSPQDARKVFEGMDQR----NVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDA 1522

Query: 378  QTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEA 431
             T+  L++M    G  D A + +  + +  G    VD +  +ID L     V EA
Sbjct: 1523 VTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEA 1577



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 36/174 (20%)

Query: 303  CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
            C P++ T+  ++ G+C AG +  AY+ L+EM   G P +++ +N  +K LC  +  D AL
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 363  RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDG 421
             L+                                    EM++ G C  DV TY  ++D 
Sbjct: 933  ELF-----------------------------------KEMEESGSCPPDVFTYSTIVDS 957

Query: 422  LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            L    KV++AC L+E++V+KG       + S L  L   G L     L   M +
Sbjct: 958  LVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR 1011



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 36/142 (25%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDG 395
           GY  +I   NC L VL       +A  L+   IE G W     TY+ LIS +   G+   
Sbjct: 121 GYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIE-GQWGGDTVTYSTLISGFIRAGKILP 179

Query: 396 AFETWHEMDKRG----------------------------------CAQDVDTYCVMIDG 421
           A+E + EM+++G                                  C  D  TY  MI+G
Sbjct: 180 AYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMING 239

Query: 422 LFDCSKVEEACFLLEEVVNKGL 443
           L    ++++A  LLEE+V+ G 
Sbjct: 240 LSKSDRLDDAIRLLEEMVDNGF 261



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 11/159 (6%)

Query: 241  IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
            +D F K     +A  +FE M  +   +       ++ M+   V + + E+ F L   M  
Sbjct: 1463 VDMFGKCGSPQDARKVFEGMDQRNVVL-------WSAMLGVYVFHKQEEQAFGLWRVMGL 1515

Query: 301  SGCLPDVSTYKEVLEGMCLAGKVEEAY-KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             G  PD  T+  +L   C AG ++ A  +F+    + G  P +  ++C + +L      +
Sbjct: 1516 EGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVN 1575

Query: 360  EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            EA  L   M+ + C PS  T+N L+S Y   G+ + A  
Sbjct: 1576 EAEDL---MLGMPCKPSAATWNCLLSAYKICGDFERALR 1611



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 25/134 (18%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E +     P +   N L+D LCK               NKV+  A        + LE 
Sbjct: 603 FQEMLGCGCAPNLVTYNTLIDGLCKI--------------NKVEQAA--------EMLEI 640

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M +    PD+ TY   I+  C A  + EA  +   M+ KG     P   TY  ++ AL +
Sbjct: 641 MRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCL---PDRMTYGTLLRALQK 697

Query: 285 NDRMEECFSLLGHM 298
            + +E    LL  M
Sbjct: 698 TNNLELVEQLLKEM 711


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 217/483 (44%), Gaps = 50/483 (10%)

Query: 25  SLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSV 84
           S+   +  +P        E ++  +D+ ++   +  +  + + +  A+D   V ++   V
Sbjct: 70  SVSKPLSILPGCPAPASHEEAEFEADIDEVSRILSSHFASPEAIVIAMDCCPVRVSGRMV 129

Query: 85  VGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY 144
             +L+RF  +   AF FFMWAG Q+ Y H    YNLM+DIL     K KQF L+  ++  
Sbjct: 130 DKILRRFGSDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILG----KFKQFDLLWGLIRQ 185

Query: 145 MKRNNKVFVPVDVLLMILKQ------YTEKIKVKTQ-------PEINALNLLLDALCKCG 191
           M       V +  +  ++++      +T+ I    +        +  A+N LLD LCK  
Sbjct: 186 MDEIG-CLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCKEK 244

Query: 192 LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNT 239
            V  A  + + ++  V P+ +++N L               T++EM + G +P   TY +
Sbjct: 245 SVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTS 304

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I+ +C  +       +   M +KG     P   TY I++ AL +  R +E   +   + 
Sbjct: 305 LIEAYCMEKDFQTVYAILNEMCSKGC---RPNVITYTIVMHALGKAGRTQEALDVFDKVK 361

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GC+PD S Y  ++  +  AG++E+A    +EM   G PP +  +N  +   CD+   +
Sbjct: 362 RDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAE 421

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE--------MDKRGCAQD 411
            AL++  +M E  C P ++TY  L+ +  +          W +        M ++  + D
Sbjct: 422 NALKILVKMEEQSCKPDIKTYTPLLKLCCK--------RQWMKILPFLICHMFRKDISPD 473

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
             TY +++  L    K  ++C  LEE+V KG       FD  + +L   G+L +  K   
Sbjct: 474 FSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFMPKQETFDLVMEKLDK-GNLHSAKKKIQ 532

Query: 472 HMR 474
           H++
Sbjct: 533 HLK 535


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 229/489 (46%), Gaps = 38/489 (7%)

Query: 26  LQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVV 85
           L+ Y  K P         + +   DV K+Y  I+  +++ + ++++L S  + L+ + + 
Sbjct: 3   LRHYTSKSPFTSILRRLSTFNPNDDVHKVY-TILTTTSSPETLKQSLKSTQIFLSNELID 61

Query: 86  GVLQRFQF---EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
            VL+R +F          FF + G +  + H   + + M+ IL     +++ F  V  +L
Sbjct: 62  QVLKRVRFGHANPNQTLEFFRYTGRRKGFYHTAYSLDTMLYILG----RSRMFDHVWELL 117

Query: 143 DYMKRNNK-VFVPVDVLLMI--------LKQYTEKIKV--KTQPE--INALNLLLDALCK 189
              +R ++ V  P  V++++        ++Q  E  +   K  P+  +N  N LL  LC+
Sbjct: 118 IEARRKDQNVITPRTVMVVLGRVAKVCSVRQTVETFRKFKKIVPDYGVNCFNALLRTLCQ 177

Query: 190 CGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLE-------EMIQMGHAPDNFTYNTA 240
              +  A  +   +K+  +PN  T+NIL  G + +E       EM +MG  PD  TYN+ 
Sbjct: 178 EKSMTDARNVYHSLKHNFRPNLQTFNILLSGWKNVEDAELFVNEMKEMGVEPDVVTYNSL 237

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +D +CK R + +A  +F+ MR K     SP   TY  +I  L    + ++   +L  M  
Sbjct: 238 VDVYCKGREIEKAYKVFDEMREKDL---SPDVITYTSVIGGLGLVGQPDKARDVLKEMKE 294

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  PDV  Y   +   C+A ++  A++ ++EM NKG  P+  TYN F +V   + +   
Sbjct: 295 YGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQS 354

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           +  LY RM+  GC P  Q+   LI ++    + + A + W EM ++G         V+ D
Sbjct: 355 SWNLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMALQLWGEMVEKGFGSYTLVSDVLFD 414

Query: 421 GLFDCSKVEEA--CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478
            L D  K+ EA  CFL  E++ KG +     F    + + +     AI  L+  M  F  
Sbjct: 415 MLCDMGKLMEAEKCFL--EMIEKGQRPSNVSFKRIKVLMELANKHEAIQNLTQKMAIFGR 472

Query: 479 PV-IARRLA 486
           P+ +  R+A
Sbjct: 473 PLQVHERVA 481


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 216/458 (47%), Gaps = 44/458 (9%)

Query: 33  VPSLVCKVFDESSDSVS-DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRF 91
           VPSL  +  D   D +S DV  + + + +  +     ++ L+   V L+   VV VL R 
Sbjct: 16  VPSLQLRFRD---DRLSQDVKTILDIMHEMGSGPSQTKQKLEHCSVDLSAKLVVEVLLRT 72

Query: 92  QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN-- 149
           + + + AF FF+WAG Q  YAH    Y+ MI IL     K ++F    ++++ M+R    
Sbjct: 73  RNDWEAAFTFFLWAGKQPGYAHSIREYHSMISILG----KMRKFDTAWNLIEEMRRGRTG 128

Query: 150 -KVFVPVDVLLMILK------------QYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
             +  P  +L+MI K             +    +   Q  +   + LL ALC+   V  A
Sbjct: 129 PSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDA 188

Query: 197 ETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-------------DNFTYNTAIDT 243
           E +    KN    +  ++NI+       ++   HA              D  +Y + I  
Sbjct: 189 EHLLFCNKNLFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISC 248

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           + K+  + +   +F+ M+ +  T   P  K Y  +I AL +   ++E  +L+G + ++  
Sbjct: 249 YSKSSKLYKVLRMFDEMKKRKIT---PDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDV 305

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            P+V TY  +++ +C AGKV+EA +   E+  +   P I T++ F ++L   +  +E   
Sbjct: 306 TPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKRHLSPTIQTFHAFFRIL---RTKEEVFE 362

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L  +M E+GC+P+++TY ML+  +    + D  F+ W  M + G   D  +Y V+I GLF
Sbjct: 363 LLDKMKELGCYPTIETYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIVLIHGLF 422

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              K+EEA     E+  KG  LP  K +  ++Q  V G
Sbjct: 423 LNGKLEEAHTYYAEMQEKGF-LPEPKTEE-MLQAWVSG 458


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 224/463 (48%), Gaps = 40/463 (8%)

Query: 41  FDESSDSVS---DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK- 96
           F  S+D+ S   ++  ++  I  +S++ D M+ +L+S  V L+ + + GVL+R +F    
Sbjct: 29  FSSSTDNQSLHQNIETVFRIITTSSSSTD-MKHSLESSRVFLSNELIDGVLKRVRFSHGN 87

Query: 97  --IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
              A  FF +   +  + H   + + M+ IL     ++++F  +  +L  +K  +   + 
Sbjct: 88  PLQALEFFNYTAKRRGFYHTSFSVDTMLYILG----RSRKFDKIWDVLLDVKFKDPSLIS 143

Query: 155 VDVLLMIL---------KQYTEKIKV--KTQPE--INALNLLLDALCKCGLVDYAETICK 201
           +  ++++L         +Q  E  +   K  PE  +   N LL  LC+   +  A  +  
Sbjct: 144 LRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYH 203

Query: 202 RVKNKVKPNANTYNIL--GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            +K+  +PN  T+NIL  G ++ EE       MI+MG  PD  +YN  +D +CK R + +
Sbjct: 204 GLKSMFRPNLQTFNILLSGWKSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDK 263

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  +   MR +          TY  +I  L    + ++  ++L  M   GC PDV+ Y  
Sbjct: 264 AFKVVGKMRDEDIPAD---VITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNA 320

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
            +   C+A ++ EA+  L+EM NKG  P+  TYN F ++   + +   A  LY RM++ G
Sbjct: 321 TIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTG 380

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA- 431
           C P+ Q+   L+ ++ +  + + A E W++M ++G    +     + D L D  K+ EA 
Sbjct: 381 CLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAE 440

Query: 432 -CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            CFL  ++V+KG K  Y  F    + + +     A+  LS  M
Sbjct: 441 SCFL--QMVDKGHKPSYTSFKRIKVLMELANKHEALQNLSKKM 481


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 224/463 (48%), Gaps = 40/463 (8%)

Query: 41  FDESSDSVS---DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK- 96
           F  S+D+ S   ++  ++  I  +S++ D M+ +L+S  V L+ + + GVL+R +F    
Sbjct: 29  FSSSTDNQSLHQNIETVFRIITTSSSSTD-MKHSLESSRVFLSNELIDGVLKRVRFSHGN 87

Query: 97  --IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
              A  FF +   +  + H   + + M+ IL     ++++F  +  +L  +K  +   + 
Sbjct: 88  PLQALEFFNYTAKRRGFYHTSFSVDTMLYILG----RSRKFDKIWDVLLDVKFKDPSLIS 143

Query: 155 VDVLLMIL---------KQYTEKIKV--KTQPE--INALNLLLDALCKCGLVDYAETICK 201
           +  ++++L         +Q  E  +   K  PE  +   N LL  LC+   +  A  +  
Sbjct: 144 LRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYH 203

Query: 202 RVKNKVKPNANTYNIL--GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            +K+  +PN  T+NIL  G ++ EE       MI+MG  PD  +YN  +D +CK R + +
Sbjct: 204 GLKSMFRPNLQTFNILLSGWKSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDK 263

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  +   MR +          TY  +I  L    + ++  ++L  M   GC PDV+ Y  
Sbjct: 264 AFKVVGKMRDEDIPAD---VITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNA 320

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
            +   C+A ++ EA+  L+EM NKG  P+  TYN F ++   + +   A  LY RM++ G
Sbjct: 321 TIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTG 380

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA- 431
           C P+ Q+   L+ ++ +  + + A E W++M ++G    +     + D L D  K+ EA 
Sbjct: 381 CLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAE 440

Query: 432 -CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            CFL  ++V+KG K  Y  F    + + +     A+  LS  M
Sbjct: 441 SCFL--QMVDKGHKPSYTSFKRIKVLMELANKHEALQNLSKKM 481


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 227/495 (45%), Gaps = 46/495 (9%)

Query: 36  LVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEE 95
           L C + DE      DV K+ + + D  +    +   L+   V  + + VV +L R + + 
Sbjct: 84  LGCSISDELVSE--DVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDW 141

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           + AF FF+WAG Q  Y      Y+ MI IL     K ++F    +++D M++ +   V  
Sbjct: 142 ETAFTFFVWAGKQQGYVRSVREYHSMISILG----KMRKFDTAWTLIDEMRKFSPSLVNS 197

Query: 156 DVLLMILKQYTEKIKV-------------KTQPEINALNLLLDALCKCGLVDYAETICKR 202
             LL+++++Y     V             K +  I+    LL ALC+   V  A  +   
Sbjct: 198 QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFC 257

Query: 203 VKNKVKPNANTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
            K+K   +A ++NI+               +   EM  +G   D  +Y++ I  + K   
Sbjct: 258 NKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGS 317

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVS 308
           + +   LF+ M+ +      P  K Y  ++ AL +   + E  +L+  M    G  P+V 
Sbjct: 318 LNKVLKLFDRMKKE---CIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVV 374

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  +++ +C A K EEA +  +EM  KG  P I TY+ F+++L   + G+E   L  +M
Sbjct: 375 TYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL---RTGEEVFELLAKM 431

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            ++GC P+V+TY MLI       + D     W EM ++    D+ +Y VMI GLF   K+
Sbjct: 432 RKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKI 491

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA-- 486
           EEA    +E+ +KG++ P    +  ++Q    G   A  +++D   +     I ++    
Sbjct: 492 EEAYGYYKEMKDKGMR-PNENVED-MIQSWFSGKQYAEQRITDSKGEVNKGAIVKKSERE 549

Query: 487 ---LNQKRVRISLRE 498
              L Q  VR  +RE
Sbjct: 550 KNFLQQPEVRKVVRE 564


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 227/495 (45%), Gaps = 46/495 (9%)

Query: 36  LVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEE 95
           L C + DE      DV K+ + + D  +    +   L+   V  + + VV +L R + + 
Sbjct: 44  LGCSISDELVSE--DVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDW 101

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           + AF FF+WAG Q  Y      Y+ MI IL     K ++F    +++D M++ +   V  
Sbjct: 102 ETAFTFFVWAGKQQGYVRSVREYHSMISILG----KMRKFDTAWTLIDEMRKFSPSLVNS 157

Query: 156 DVLLMILKQYTEKIKV-------------KTQPEINALNLLLDALCKCGLVDYAETICKR 202
             LL+++++Y     V             K +  I+    LL ALC+   V  A  +   
Sbjct: 158 QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFC 217

Query: 203 VKNKVKPNANTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
            K+K   +A ++NI+               +   EM  +G   D  +Y++ I  + K   
Sbjct: 218 NKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGS 277

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVS 308
           + +   LF+ M+ +      P  K Y  ++ AL +   + E  +L+  M    G  P+V 
Sbjct: 278 LNKVLKLFDRMKKE---CIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVV 334

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  +++ +C A K EEA +  +EM  KG  P I TY+ F+++L   + G+E   L  +M
Sbjct: 335 TYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL---RTGEEVFELLAKM 391

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            ++GC P+V+TY MLI       + D     W EM ++    D+ +Y VMI GLF   K+
Sbjct: 392 RKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKI 451

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA-- 486
           EEA    +E+ +KG++ P    +  ++Q    G   A  +++D   +     I ++    
Sbjct: 452 EEAYGYYKEMKDKGMR-PNENVED-MIQSWFSGKQYAEQRITDSKGEVNKGAIVKKSERE 509

Query: 487 ---LNQKRVRISLRE 498
              L Q  VR  +RE
Sbjct: 510 KNFLQQPEVRKVVRE 524


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 206/435 (47%), Gaps = 33/435 (7%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           VS+  KL E +    ++   + KAL+  G+  T + V  +L RF     +AF  F+WA +
Sbjct: 55  VSNADKLSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKN 114

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
           Q +Y H P  Y+ MIDIL     K K+F L+ S+++ MK  N  +V +     ++++  +
Sbjct: 115 QTSYVHTPELYDYMIDILG----KFKKFSLMWSLVEQMKGLNG-YVSLATASKVMRRLAK 169

Query: 168 KIKVKTQPEI-------------NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
             K K   ++              ALN+L+DAL K G V+ A +     K+ +  +++++
Sbjct: 170 ARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSF 229

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           NIL              + +EEM + G  PD  +Y+  I  +C+ +       +F+ M+ 
Sbjct: 230 NILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQE 289

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           KG     P   TY  ++ AL +  ++ E   +   M  +GCLPD   Y  ++  +  +G+
Sbjct: 290 KGC---KPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGR 346

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A+   E+M  +G   ++  YN  +   C +  G  AL+L  RM    C P V+TY  
Sbjct: 347 IKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAP 406

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+ M                M K   + D+ TY ++++      K+E ACF  +E V KG
Sbjct: 407 LLKMCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKG 466

Query: 443 LKLPYRKFDSYLMQL 457
           +    + F + + +L
Sbjct: 467 MVPMVKTFKALVEEL 481



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 17/200 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P +     ++ AL K   ++ A  + +++K N   P++  Y+ L               
Sbjct: 293 KPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWD 352

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E+M + G   + + YNT I + C       A  L E  R +G +   P  KTYA ++ 
Sbjct: 353 VFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLE--RMEGDSCK-PDVKTYAPLLK 409

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   ++    LL HM  +    D+ TY  ++   C  GK+E A  + +E   KG  P
Sbjct: 410 MCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVP 469

Query: 341 DIVTYNCFLKVLCDNKNGDE 360
            + T+   ++ L + KN  E
Sbjct: 470 MVKTFKALVEEL-EQKNMKE 488


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 155/314 (49%), Gaps = 19/314 (6%)

Query: 183 LLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  LCK   ++ A   + K V     P+  TY  +              + LEEM    
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY   ID  CK   V EA  L   MR K      PTA TY  +I  L + +R  
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK----CVPTAVTYNSLISGLCKAERAS 132

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E + LL  M+ SGC+PD+ TY  ++ G C + K ++A +  E++  +G+ PD+VTY+C +
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 350 KVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
             LC      EA+ L+GRMI+ G C P+  TYN LIS +  +G+ D A      M + G 
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIH 467
           + DV TY  +++G    +++++A  LL ++  KGL      F S +  L     L  A+H
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 468 KLSDHMRKFYNPVI 481
            L +  RK  +P +
Sbjct: 313 ILGEMRRKSCSPTV 326



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 135/278 (48%), Gaps = 17/278 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P +    +L+D LCK G VD A  +  +++ K  P A TYN L                L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLL 138

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EEM+  G  PD FTY T I  FCK++   +A  +FE +  +G     P   TY+ +I  L
Sbjct: 139 EEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG---FRPDVVTYSCLIDGL 195

Query: 283 VQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            +  R++E   L G MI SG C+P+  TY  ++ G C  GK++EA   LE M   G  PD
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +   C     D+A  L  +M   G  P V T+  L+           A     
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA-CFLLEEV 438
           EM ++ C+  V TY  ++DG    +++EEA  F+LEE+
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 148/330 (44%), Gaps = 55/330 (16%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL-- 217
           L+ + + +    +P++   + L+D LCK G +  A  +  R+       PN  TYN L  
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  LE M + G +PD  TY T ++ FCK   + +A DL   M  KG T 
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT- 288

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  ++  L + +R+ +   +LG M    C P V TY  +L+G C A ++EEA 
Sbjct: 289 --PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 328 KFL---------------------------------EEMGNKGYPPDIVTYNCFLKVLCD 354
           KF+                                 EE   +   PD+V Y   +  LC 
Sbjct: 347 KFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCR 406

Query: 355 NKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            K  DEA R+Y +M+ E GC P+  TY+ L++     G  D A        ++GC  ++ 
Sbjct: 407 EKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA----RGYIEKGCVPNIG 462

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           TY ++ID     ++ E+A  LL+++V +G 
Sbjct: 463 TYNLLIDAFRKANRDEDARELLDDMVQRGF 492



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 1/171 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L +  R+E+    LG M++ G  PDV TY  V+  +C+  ++ EA KFLEEM
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            N+   P++VTY   +  LC     DEA+ L  +M +  C P+  TYN LIS   +    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A++   EM   GC  D+ TY  +I G     K ++A  + E++V +G +
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 1/142 (0%)

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           + C  D  TY  +++G+C   ++E+A  FL +M +KG+ PD+ TY   +  LC      E
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A +    M      P+V TY +LI    + G  D A     +M K+ C     TY  +I 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLIS 123

Query: 421 GLFDCSKVEEACFLLEEVVNKG 442
           GL    +  EA  LLEE+V  G
Sbjct: 124 GLCKAERASEAYDLLEEMVYSG 145



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 26/211 (12%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D + R N++   V +L        E  +    P +   N +LD  C+   ++ A   
Sbjct: 296 SLMDGLCRENRLSDAVHIL-------GEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348

Query: 200 CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
               +    PN  ++NI+             M+ +EE  +    PD   Y T ID  C+ 
Sbjct: 349 MLE-EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCRE 407

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           + V EA  ++  M  +   +  P + TY+ ++  L     ++         I  GC+P++
Sbjct: 408 KKVDEACRVYRKMLEEPGCL--PNSITYSTLVTGLCNAGMLDRARGY----IEKGCVPNI 461

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            TY  +++    A + E+A + L++M  +G+
Sbjct: 462 GTYNLLIDAFRKANRDEDARELLDDMVQRGF 492


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 204/435 (46%), Gaps = 39/435 (8%)

Query: 71  ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
           ALD+LG  ++   V  VL+       +A  FF WA  Q  + +   +++ +I+ L     
Sbjct: 135 ALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFVYTADSFHNLIEALG---- 190

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------QPEI 177
           K KQFRLV S+++ M+   +  +  D   +I+++Y    KVK              + ++
Sbjct: 191 KIKQFRLVWSLVEAMR--CRGLLSKDTFRLIVRRYARARKVKEAVETFEKMAGFGLKADL 248

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL----GMQ--------TLE 223
           +  N L+D L K   V  A  I K +K   +  P+  TY +L    G +          +
Sbjct: 249 SDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQ 308

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM+  G  PD   Y   I +FCK+    EA  +F  M T G     P+   Y ++I  L 
Sbjct: 309 EMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCM---PSPHVYCMLINGLG 365

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
             +R++E          SG   +V T   V+   C + K + A+K ++EM   G  P+  
Sbjct: 366 SEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSR 425

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  L  L  ++  +EA  ++  M + GC P + TY M++ M+      D A + W++M
Sbjct: 426 TYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQM 485

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            ++G    +  +  +I+GL   +++EEAC   +E++++G++ P + F +    L   G +
Sbjct: 486 KEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPPGQLFSNLKEALIEGGRI 545

Query: 464 GAIHKLS---DHMRK 475
               +++   D +RK
Sbjct: 546 SLAQEMALKLDELRK 560


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 205/432 (47%), Gaps = 38/432 (8%)

Query: 41  FDESSDSVS-DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
           F  S D VS DV  + + + +  +    +   L+   V  + + VV +L + + + + AF
Sbjct: 35  FTISDDGVSEDVGTIVKLLKNCGSDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAF 94

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
            FF+WAG Q  Y      Y+ MI IL     K ++F    +++D M++ +   V    LL
Sbjct: 95  TFFVWAGKQQGYVRSVREYHSMISILG----KMRKFDTAWTLIDEMRKFSPSLVNSQTLL 150

Query: 160 MILKQYTEKIKV-------------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
           +++++Y     V             K +  I+    LL ALC+   V  AE +    K+ 
Sbjct: 151 IMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDT 210

Query: 207 VKPNANTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
              +A ++NI+               +   EM  +G   D  +Y++ I  + K   + + 
Sbjct: 211 YPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKV 270

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKE 312
             LF+  R K  +I  P  K Y  +I AL +   + E  +L+  M    G  P+V TY  
Sbjct: 271 LKLFD--RMKKESIE-PDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNS 327

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++ +C A K EEA +  +EM  KG  P I TY+ F+++L   + G+E   L  +M ++G
Sbjct: 328 LIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL---RTGEEVFELLAKMRKMG 384

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C P+V TY MLI       + D     W+EM ++G   D+ +Y VMI GLF   K+EEA 
Sbjct: 385 CQPTVDTYIMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAY 444

Query: 433 FLLEEVVNKGLK 444
              +E+  KG++
Sbjct: 445 GYYKEMKEKGMR 456



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 94/227 (41%), Gaps = 27/227 (11%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           +LK +    K   +P+    N ++ AL K   V  A  +                   M+
Sbjct: 270 VLKLFDRMKKESIEPDRKVYNAVIHALAKASFVSEARNL-------------------MK 310

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           T+EE  + G  P+  TYN+ I   CKAR   EA  +F+ M  KG     PT +TY   + 
Sbjct: 311 TMEE--EKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLF---PTIRTYHAFMR 365

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L      EE F LL  M   GC P V TY  ++  +C     +       EM  KG  P
Sbjct: 366 ILRTG---EEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLWNEMKEKGVGP 422

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           D+ +Y   +  L  N   +EA   Y  M E G  P+    +M+ S +
Sbjct: 423 DLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKGMRPNENVEDMIQSWF 469


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 155/314 (49%), Gaps = 19/314 (6%)

Query: 183 LLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  LCK   ++ A   + K V     P+  TY  +              + LEEM    
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY   ID  CK   V EA  L   MR K      PTA TY  +I  L + +R  
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK----CVPTAVTYNSLISGLCKAERAS 132

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E + LL  M+ SGC+PD+ TY  ++ G C + K ++A +  E++  +G+ PD+VTY+C +
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 350 KVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
             LC      EA+ L+GRMI+ G C P+  TYN LIS +  +G+ D A      M + G 
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIH 467
           + DV TY  +++G    +++++A  LL ++  KGL      F S +  L     L  A+H
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 468 KLSDHMRKFYNPVI 481
            L +  RK  +P +
Sbjct: 313 ILGEMRRKSCSPTV 326



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 135/278 (48%), Gaps = 17/278 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P +    +L+D LCK G VD A  +  +++ K  P A TYN L                L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLL 138

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EEM+  G  PD FTY T I  FCK++   +A  +FE +  +G     P   TY+ +I  L
Sbjct: 139 EEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG---FRPDVVTYSCLIDGL 195

Query: 283 VQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            +  R++E   L G MI SG C+P+  TY  ++ G C  GK++EA   LE M   G  PD
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +   C     D+A  L  +M   G  P V T+  L+           A     
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA-CFLLEEV 438
           EM ++ C+  V TY  ++DG    +++EEA  F+LEE+
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 148/330 (44%), Gaps = 55/330 (16%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL-- 217
           L+ + + +    +P++   + L+D LCK G +  A  +  R+       PN  TYN L  
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  LE M + G +PD  TY T ++ FCK   + +A DL   M  KG T 
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT- 288

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  ++  L + +R+ +   +LG M    C P V TY  +L+G C A ++EEA 
Sbjct: 289 --PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 328 KFL---------------------------------EEMGNKGYPPDIVTYNCFLKVLCD 354
           KF+                                 EE   +   PD+V Y   +  LC 
Sbjct: 347 KFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCR 406

Query: 355 NKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            K  DEA R+Y +M+ E GC P+  TY+ LI+     G  D A        ++GC  ++ 
Sbjct: 407 EKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA----RGYIEKGCVPNIG 462

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           TY ++ID     ++ E+A  LL+++V +G 
Sbjct: 463 TYNLLIDAFRKANRDEDARELLDDMVQRGF 492



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 1/171 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L +  R+E+    LG M++ G  PDV TY  V+  +C+  ++ EA KFLEEM
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            N+   P++VTY   +  LC     DEA+ L  +M +  C P+  TYN LIS   +    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A++   EM   GC  D+ TY  +I G     K ++A  + E++V +G +
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 1/142 (0%)

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           + C  D  TY  +++G+C   ++E+A  FL +M +KG+ PD+ TY   +  LC      E
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A +    M      P+V TY +LI    + G  D A     +M K+ C     TY  +I 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLIS 123

Query: 421 GLFDCSKVEEACFLLEEVVNKG 442
           GL    +  EA  LLEE+V  G
Sbjct: 124 GLCKAERASEAYDLLEEMVYSG 145



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 26/211 (12%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D + R N++   V +L        E  +    P +   N +LD  C+   ++ A   
Sbjct: 296 SLMDGLCRENRLSDAVHIL-------GEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348

Query: 200 CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
               +    PN  ++NI+             M+ +EE  +    PD   Y T ID  C+ 
Sbjct: 349 MLE-EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCRE 407

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           + V EA  ++  M  +   +  P + TY+ +I  L     ++         I  GC+P++
Sbjct: 408 KKVDEACRVYRKMLEEPGCL--PNSITYSTLITGLCNAGMLDRARGY----IEKGCVPNI 461

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            TY  +++    A + E+A + L++M  +G+
Sbjct: 462 GTYNLLIDAFRKANRDEDARELLDDMVQRGF 492


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 189/408 (46%), Gaps = 36/408 (8%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           LD+LGV ++   V  VL+       +A  FF WA  Q  + +    ++ +I+ L     K
Sbjct: 111 LDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALG----K 166

Query: 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-------------IN 178
            KQFRLV S+++ M+   +  +  D   +I+++Y    KVK   E             ++
Sbjct: 167 IKQFRLVWSLVEAMR--CRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLS 224

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL----GMQ--------TLEE 224
             N L+D L K   V  A  I K +K K +  P+  TY +L    G +          +E
Sbjct: 225 DYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQE 284

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G  PD   Y   I  FCK+    EA  +F  M   G     P+   Y ++I  L  
Sbjct: 285 MLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCM---PSPHVYCMLINGLGS 341

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            +R++E          SG   +V T   V+   C A +   A+K ++EM   G  P+  T
Sbjct: 342 MERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRT 401

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+  L  L  ++  +EA  L+ RM   GC P + TY M++ M+      D A + W +M 
Sbjct: 402 YDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMK 461

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
           ++G    +  +  +I+GL   +++EEAC   +E+++KG++ P + F +
Sbjct: 462 EKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSN 509



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 141/302 (46%), Gaps = 37/302 (12%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV---------------LLMIL 162
           YN +IDILS    K+KQ +   ++   MKR  + F+P D+               LLM+ 
Sbjct: 226 YNWLIDILS----KSKQVKKAHAIFKEMKRKGR-FIP-DLKTYTVLMEGWGHEKDLLMLK 279

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY----NIL 217
             Y E +    +P++ A  +L+ A CK G  D A  +   ++ +   P+ + Y    N L
Sbjct: 280 AVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGL 339

Query: 218 G-MQTLEEMI-------QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
           G M+ L+E +       + G   +  T N  I  +C+A     A  + + MR  G     
Sbjct: 340 GSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGI---G 396

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P  +TY I++  L++++++EE ++L   M   GC P+++TY  ++   C   +V+ A K 
Sbjct: 397 PNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKV 456

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++M  KG  P +  ++  +  LC     +EA   +  M++ G  P  Q ++ L     E
Sbjct: 457 WKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVE 516

Query: 390 LG 391
            G
Sbjct: 517 GG 518



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 70/171 (40%), Gaps = 16/171 (9%)

Query: 176 EINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTL 222
           E+   N ++ A C+     +A + + +  K+ + PN  TY+I+                 
Sbjct: 363 EVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLF 422

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M + G  P+  TY   +  FC    V  A  +++ M+ KG     P    ++ +I  L
Sbjct: 423 QRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVL---PCMHMFSALINGL 479

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
              +R+EE       M++ G  P    +  + E +   G++  A +  + +
Sbjct: 480 CFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRL 530


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 153/286 (53%), Gaps = 17/286 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           I+   QP +     L+D  C+ G +D A E + K  +   +PNA TYN +          
Sbjct: 141 IQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKL 200

Query: 218 --GMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
              +Q  +EM + G  P D FTY+T +D+  K+  V +A  L E M +KG    SP   T
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGC---SPNVVT 257

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y+ ++  L +  +++E  +LL  M  SGC P++ TY  +++G C  G+++EAY  LEEM 
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 317

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           + G  P++VTY   L   C     ++A+ L   M+E G  P++ TYN L+ M+ +  E +
Sbjct: 318 DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVE 377

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            A +    M ++GC  +V +Y  +I GL   +KV E   LLE++++
Sbjct: 378 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS 423



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 171/354 (48%), Gaps = 31/354 (8%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL------------LMI 161
           + + YN MI+ LS +       RL+  M+D     N VF    VL            L +
Sbjct: 43  DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPN-VFSYNTVLHGFCKANRVENALWL 101

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           L+Q   +      P++ +   +++ LCK   VD A   + K ++   +PN  TY  L   
Sbjct: 102 LEQMVMR---GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 158

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     ++ + +M + G+ P+  TYN  +   C  R +  A  LF+ M   GS   
Sbjct: 159 FCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGS--C 216

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+ ++ +LV++ ++++   L+  M++ GC P+V TY  +L G+C AGK++EA  
Sbjct: 217 PPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 276

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L+ M   G  P+IVTYN  +   C     DEA  L   M++ GC P+V TY +L+  + 
Sbjct: 277 LLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC 336

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + G+ + A      M ++G   ++ TY  ++D      +VE AC LL  ++ KG
Sbjct: 337 KCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 390



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 125/275 (45%), Gaps = 40/275 (14%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + + +   C A   ++A   F  M    S    P + TY  MI  L ++DR+++   LL 
Sbjct: 13  HKSILRGLCDAGQCSDAVLHFREM----SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLE 68

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+++G  P+V +Y  VL G C A +VE A   LE+M  +G PPD+V+Y   +  LC   
Sbjct: 69  EMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLD 128

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG--------- 407
             DEA R+  +MI+ GC P+V TY  L+  +  +G+ DGA E   +M +RG         
Sbjct: 129 QVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYN 188

Query: 408 ---------------------------CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
                                      C  DV TY  ++D L    KV++AC L+E +V+
Sbjct: 189 NIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVS 248

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           KG       + S L  L   G L     L   M +
Sbjct: 249 KGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR 283



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 137/286 (47%), Gaps = 23/286 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVK----PNANTYNIL------------G 218
           P +   N LLD  CK    D  E  C+ + + ++    PN  +YN +            G
Sbjct: 358 PNLFTYNSLLDMFCK---KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 414

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  LE+M+     PD  T+NT ID  CK   V  A +LF  ++  G T   P   TY  +
Sbjct: 415 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCT---PNLVTYNSL 471

Query: 279 IVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +  L ++ R ++   LL  M    GC PD+ TY  V++G+C + +V+ AYK   +M + G
Sbjct: 472 VHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDG 531

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD VTY+  +  LC  +  DEA  +   M++ G  P   TY  LI  + + G  D A 
Sbjct: 532 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 591

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           E    +  +G   DV T+ + ID L    ++ +A  LLE ++  GL
Sbjct: 592 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGL 637



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 17/323 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------- 217
           E +    QP +    +LLDA CKCG  + A  + +  V+    PN  TYN L        
Sbjct: 315 EMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 374

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 Q L  MIQ G  P+  +YNT I   CKA  V E   L E M +       P   
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCV---PDIV 431

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+  +I A+ +  R++  + L   +  SGC P++ TY  ++ G+C + + ++A   L EM
Sbjct: 432 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 491

Query: 334 GNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
             K G  PDI+TYN  +  LC +K  D A +L+ +M+  G  P   TY+++IS   +   
Sbjct: 492 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 551

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A      M K G      TY  +IDG      +++A  +L+ +++KG       F  
Sbjct: 552 MDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSI 611

Query: 453 YLMQLSVIGDLGAIHKLSDHMRK 475
           ++  LS  G L    +L + M +
Sbjct: 612 FIDWLSKRGRLRQAGELLETMLR 634



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 143/300 (47%), Gaps = 18/300 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D  L + K+  E       P++   + ++D+L K G VD A  + + + +K   PN  T
Sbjct: 200 LDSALQLFKEMEES--GSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVT 257

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L                L+ M + G +P+  TYNT ID  CK   + EA  L E M 
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 317

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P   TY +++ A  +  + E+   L+  M+  G +P++ TY  +L+  C   
Sbjct: 318 DGGC---QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 374

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +VE A + L  M  KG  P++V+YN  +  LC      E + L  +M+   C P + T+N
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +I    +    D A+E ++ + + GC  ++ TY  ++ GL    + ++A +LL E+  K
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRK 494



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 24/291 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P+I   N ++DA+CK   VD A  +   ++ +   PN  TYN L                
Sbjct: 428 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 487

Query: 222 LEEMI-QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           L EM  + G +PD  TYNT ID  CK++ V  A  LF  M + G    +P   TY+I+I 
Sbjct: 488 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL---APDDVTYSIVIS 544

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L +   M+E  ++L  M+ +G  P   TY  +++G C  G +++A + L+ + +KG  P
Sbjct: 545 SLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYP 604

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VT++ F+  L       +A  L   M+  G  P   TYN L+  + +    + A + +
Sbjct: 605 DVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLF 664

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV----VNKGLKLPY 447
             M + GC  D  TY  ++  L D    ++   LL EV    V+ G KL +
Sbjct: 665 EVMRQCGCEPDNATYTTLVGHLVDKKSYKD---LLAEVSKSMVDTGFKLNH 712



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   G       +K +L G+C AG+  +A     EM +K  PPD VTYN  +  L  +  
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDR 59

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D+A+RL   M++ G  P+V +YN ++  + +    + A     +M  RGC  DV +Y  
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKF 476
           +I+GL    +V+EAC ++++++ +G +     + + +     +GDL GA+  +     + 
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 477 YNP 479
           Y P
Sbjct: 180 YRP 182



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 52/242 (21%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175
           + YN +ID L  +K   + ++L   ML      +    P DV                  
Sbjct: 502 ITYNTVIDGLCKSKRVDRAYKLFLQML------SDGLAPDDV------------------ 537

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNF 235
                ++++ +LCK   +D A  +                      LE M++ G  P   
Sbjct: 538 ---TYSIVISSLCKWRFMDEANNV----------------------LELMLKNGFDPGAI 572

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY T ID FCK   + +A ++ + + +KGS    P   T++I I  L +  R+ +   LL
Sbjct: 573 TYGTLIDGFCKTGNLDKALEILQLLLSKGSY---PDVVTFSIFIDWLSKRGRLRQAGELL 629

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+ +G +PD  TY  +L+G C A + E+A    E M   G  PD  TY   +  L D 
Sbjct: 630 ETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDK 689

Query: 356 KN 357
           K+
Sbjct: 690 KS 691


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 189/408 (46%), Gaps = 36/408 (8%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           LD+LGV ++   V  VL+       +A  FF WA  Q  + +    ++ +I+ L     K
Sbjct: 111 LDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALG----K 166

Query: 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-------------IN 178
            KQFRLV S+++ M+   +  +  D   +I+++Y    KVK   E             ++
Sbjct: 167 IKQFRLVWSLVEAMR--CRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLS 224

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL----GMQ--------TLEE 224
             N L+D L K   V  A  I K +K K +  P+  TY +L    G +          +E
Sbjct: 225 DYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQE 284

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G  PD   Y   I  FCK+    EA  +F  M   G     P+   Y ++I  L  
Sbjct: 285 MLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCM---PSPHVYCMLINGLGS 341

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            +R++E          SG   +V T   V+   C A +   A+K ++EM   G  P+  T
Sbjct: 342 MERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRT 401

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+  L  L  ++  +EA  L+ RM   GC P + TY M++ M+      D A + W +M 
Sbjct: 402 YDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMK 461

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
           ++G    +  +  +I+GL   +++EEAC   +E+++KG++ P + F +
Sbjct: 462 EKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSN 509



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 37/302 (12%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV---------------LLMIL 162
           YN +IDILS    K+KQ +   ++   MKR  + F+P D+               LLM+ 
Sbjct: 226 YNWLIDILS----KSKQVKKAHAIFKEMKRKGR-FIP-DLKTYTVLMEGWGHEKDLLMLK 279

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY----NIL 217
             Y E +    +P++ A  +L+ A CK G  D A  +   ++ +   P+ + Y    N L
Sbjct: 280 AVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGL 339

Query: 218 G-MQTLEEMI-------QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
           G M+ L+E +       + G   +  T N  I  +C+A     A  + + MR  G     
Sbjct: 340 GSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGI---G 396

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P  +TY I++  L++++++EE ++L   M   GC P+++TY  ++   C   +V+ A K 
Sbjct: 397 PNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKV 456

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++M  KG  P +  ++  +  LC +   +EA   +  M++ G  P  Q ++ L     E
Sbjct: 457 WKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVE 516

Query: 390 LG 391
            G
Sbjct: 517 GG 518



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 16/171 (9%)

Query: 176 EINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTL 222
           E+   N ++ A C+     +A + + +  K+ + PN  TY+I+                 
Sbjct: 363 EVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLF 422

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M + G  P+  TY   +  FC    V  A  +++ M+ KG     P    ++ +I  L
Sbjct: 423 QRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVL---PCMHMFSALINGL 479

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
             ++R+EE       M++ G  P    +  + E +   G++  A +  + +
Sbjct: 480 CFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRL 530


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 195/456 (42%), Gaps = 45/456 (9%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V  L   + D      ++  AL              VL+R +     + RFF++AG    
Sbjct: 58  VGSLCRVLSDFRGRGQDLPAALRGFAPGFQPRDAAAVLRRCRHLPLPSLRFFLFAGELPG 117

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN--------------NKVFVPVD 156
           ++H P +    + +L+++   A+ F L+ S+L  +  +              ++  +P D
Sbjct: 118 FSHHPDS----LLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLFRAYSRARLPED 173

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
            +    + ++        P I   + LL AL + GLV+Y E   +    +   +A  Y I
Sbjct: 174 AI----RAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESTAQFDVSAKAYTI 229

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L                 +EM++ G   D   YN  ID  C+   +T A +    M+   
Sbjct: 230 LISGWAVVKKPENARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSH 289

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
             +  P A TY   + A   +  +     +L  M      P+V TY  V+  +C  G++ 
Sbjct: 290 GLV--PNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEIN 347

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EAY  L+E+  +G  PD+ +YN  L   C  K  ++ALRL  RM +  C P   +YNML+
Sbjct: 348 EAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLL 407

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD-CSKVEEACFLLEEVVNKGL 443
            M   +G  D A E W  M+KRG      TY VMI GL     + E+AC     +V++G+
Sbjct: 408 KMLISVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGI 467

Query: 444 KLPYRK----FDSYLMQLSVIGDLGAIHKLSDHMRK 475
             PY+         L+ L +   LG    L+D MR+
Sbjct: 468 P-PYQATCEVLRDRLLMLGLRDQLGV---LTDRMRR 499


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 196/436 (44%), Gaps = 50/436 (11%)

Query: 50  DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD 109
           D   + + ++ + N + +ME +L    +  ++  +   L R     KIA  FF +A    
Sbjct: 37  DADLVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSFFDYANSLP 96

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
           +      +YN+++DIL+    K +QF     ++  M          D  L+++++     
Sbjct: 97  SNPISTTSYNILLDILA----KVRQFDAAWHLILQMDHKG-----TDTFLLLIRRLISSG 147

Query: 170 KVK--------------TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
           + +               +  I+    LLD LCK G V  A  +  + K +   +   Y 
Sbjct: 148 RTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKEEFGVDVKIYT 207

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK----------ARMVTEA 253
           IL              + L++M++ G  P+  TYN  ++  C+           + +  A
Sbjct: 208 ILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTIRHA 267

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             +F+ MR +G     P   +++I++    +  + E     L  M   G  P V+TY  V
Sbjct: 268 EKVFDEMRKRGI---EPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSV 324

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE-VG 372
           ++ +C  G++E+    +EEM   G  P   TYNCF K     K+G  ALRLY +M E   
Sbjct: 325 IKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCL 384

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C PS+ TYN+L++++  L + +   E W++M + G   D+D+Y  +I GL +  +  EAC
Sbjct: 385 CAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEAC 444

Query: 433 FLLEEVVNKGLKLPYR 448
               E++ +G  LP +
Sbjct: 445 QFFVEMIERGF-LPQK 459



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 19/204 (9%)

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN---------- 355
           DV  Y  ++ G C  G+ E A +FL++M  +G  P++VTYN  L  +C            
Sbjct: 202 DVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFE 261

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           K    A +++  M + G  P V ++++++ +Y    +P+ + +   +M + G +  V TY
Sbjct: 262 KTIRHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATY 321

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             +I  L  C ++E+   L+EE+V  G+      ++ +  +     D     +L   MR+
Sbjct: 322 TSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMRE 381

Query: 476 ---------FYNPVIARRLALNQK 490
                     YN ++A  L L++K
Sbjct: 382 DCLCAPSLHTYNILLALFLNLDKK 405



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 19/219 (8%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           K + E  K   +P++ + +++L    +    + +    K++K   + P   TY  +    
Sbjct: 269 KVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCL 328

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                   G   +EEM++ G +P   TYN     +   +    A  L++ MR     + +
Sbjct: 329 CSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMRE--DCLCA 386

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+  TY I++   +  D+ E    L   M  SG  PD+ +Y  ++ G+C   +  EA +F
Sbjct: 387 PSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEACQF 446

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
             EM  +G+ P  VT+    + L  +    + LR + R+
Sbjct: 447 FVEMIERGFLPQKVTFEMLYRGLIQS----DMLRTWRRL 481


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 154/297 (51%), Gaps = 21/297 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN---------- 215
           E +  +  P     N+L+D  C+   V  A+ + + ++ + ++PN  TYN          
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 216 ----ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                LG+Q  ++M  MG  P+  TYN  I+ FCK +M+ EA ++ + +  +G    +P 
Sbjct: 349 KLDEALGLQ--DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL---APN 403

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I A  +  RM++ F L   M+++G  P+VSTY  ++ G C  G V+EA K  +
Sbjct: 404 VITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAK 463

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM   G   D+VTYN  +  LC      +A+RL   M EVG  PS  TYN LI  YF  G
Sbjct: 464 EMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREG 523

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
               A      M+K+G   ++ TY V+I G  +  K+EEA  LL E++ KGL +P R
Sbjct: 524 NSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL-IPNR 579



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 16/303 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E I+ +    +   +++++ LCK G    A  + + +K     P+  TYN +      
Sbjct: 217 YKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCK 276

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L+EM+     P+  T+N  ID FC+   VT A  +FE M+ +G     P 
Sbjct: 277 AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQG---LQPN 333

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L  N +++E   L   M   G  P+V TY  ++ G C    ++EA + L+
Sbjct: 334 VVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           ++G +G  P+++T+N  +         D+A  L   M++ G  P+V TYN LI  +   G
Sbjct: 394 DIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREG 453

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               A +   EM+  G   D+ TY +++D L    +  +A  LL+E+   GL   +  ++
Sbjct: 454 NVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYN 513

Query: 452 SYL 454
           + +
Sbjct: 514 ALI 516



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N +L +L K G +   E++ K  ++ ++  N  T++++                +E+M  
Sbjct: 198 NPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA 257

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G +P   TYNT ID +CKA  + +A  L + M  K      P   T+ I+I    +++ 
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI---HPNEITFNILIDGFCRDEN 314

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +     +   M   G  P+V TY  ++ G+C  GK++EA    ++M   G  P++VTYN 
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNA 374

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C  K   EA  +   + + G  P+V T+N LI  Y + G  D AF     M   G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              +V TY  +I G      V+EA  L +E+   GLK     ++  +  L   G+     
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAV 494

Query: 468 KLSDHM 473
           +L D M
Sbjct: 495 RLLDEM 500


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 197/444 (44%), Gaps = 50/444 (11%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           SS + +D   + + ++ + N Y   E +L   G+ LT   +   L   +   KIA     
Sbjct: 24  SSQTQNDAELISKILLTHHNPYHFTESSLQLNGITLTPILLTQTLTLLKHHSKIALSLHN 83

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
           ++    N      +YNL+IDI+S    K  QF L   ++  M + N    P    ++I +
Sbjct: 84  FSKSLPNPPLSLQSYNLLIDIVS----KVHQFDLASQLIVEMDQINLPPTPTTFFILIKR 139

Query: 164 QYTEKIKVKTQPEINALN----------------LLLDALCKCGLVDYAETICKRVKNKV 207
             +  +   T+  + A N                 LLD LCK G V +A  +  R  N+ 
Sbjct: 140 LISANL---TRQAVRAFNEIESYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNRNSNRF 196

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA-------- 247
             +   Y +L             +  L EM   G  P+  TYN  ++  C+         
Sbjct: 197 VADVKMYTVLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEER 256

Query: 248 --RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
             R + +A  +F+ MR  G     P   +++I++    +  + +     LG M   G  P
Sbjct: 257 FERTIRDAEKVFDEMRESGI---EPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICP 313

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V TY  V++ +C  G++EEA   ++EM   G  P   TYNCF K     K+ D+AL+ +
Sbjct: 314 NVVTYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFF 373

Query: 366 GRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            +M E G C P+  TY +LI+M+ +        E W++M + G   D+D+Y V+I GL +
Sbjct: 374 KKMKEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCE 433

Query: 425 CSKVEEACFLLEEVVNKGLKLPYR 448
             K  EAC    E++ KG  LP +
Sbjct: 434 SKKWREACQYFVEMIEKGF-LPQK 456



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 28/194 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     ++  LC CG ++ AE +                      ++EM++ G +P  
Sbjct: 313 PNVVTYTSVIKCLCSCGRIEEAEDL----------------------IDEMVRNGVSPCA 350

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN     +   +   +A   F+ M+  G  +  PT  TY ++I   ++ D +     +
Sbjct: 351 ATYNCFFKEYRGRKDADKALKFFKKMKEDG--LCEPTTHTYGVLIAMFLKADMIGVVKEI 408

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+ SG  PD+ +Y  ++ G+C + K  EA ++  EM  KG+ P  VT+    + L  
Sbjct: 409 WNDMMESGVGPDLDSYTVLIHGLCESKKWREACQYFVEMIEKGFLPQKVTFETLYRGLIQ 468

Query: 355 NKNGDEALRLYGRM 368
           +    + LR + R+
Sbjct: 469 S----DMLRTWRRL 478


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 208/440 (47%), Gaps = 40/440 (9%)

Query: 50  DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD 109
           DV  +   + +  +    +++ L+   + L+ + VV VL R + + + AF FF+WAG Q 
Sbjct: 127 DVKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQP 186

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK--RNNKVFVPVDVLLMILKQYTE 167
            YAH    Y+ MI IL     K ++F    ++++ M+  RN    V    LL+++++Y  
Sbjct: 187 GYAHSVREYHSMISILG----KMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMIRKYCA 242

Query: 168 KIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
              V               +  +   + LL ALC+   V  AE +    K+    +  ++
Sbjct: 243 VHDVARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPLDTKSF 302

Query: 215 NIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           NI+               +   EMI+     D  +Y + I  + K+  + +   +F+ M+
Sbjct: 303 NIILNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMK 362

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +  T   P  K Y  +I AL +   ++E  +L+G M  +   PDV TY  +++ +C A 
Sbjct: 363 KRKIT---PDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAH 419

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           KV+EA +  +EM  +   P I T++ F ++L   +  +E   L  +M E+ C+P+++TY 
Sbjct: 420 KVDEAKQLFDEMLKRHLSPTIQTFHAFFRIL---RTKEEVFELLDKMKELRCYPTIETYI 476

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           MLI  +    + D  F+ W  M +   + D  +Y V+I GLF   K+EEA     E+  K
Sbjct: 477 MLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQEK 536

Query: 442 GLKLPYRKFDSYLMQLSVIG 461
           G  LP  K +  ++Q  V G
Sbjct: 537 GF-LPEPKTEE-MLQAWVSG 554


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 192/448 (42%), Gaps = 45/448 (10%)

Query: 38  CKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI 97
           C +   S    SD   + + ++ + N +   E  L   G+ LT   +   L R +   KI
Sbjct: 24  CSLPPPSPRDESDAELISKLLLQHHNPFHATESPLQLHGITLTPTLLFHTLLRLKNHSKI 83

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           A   F +A    N      ++ L+ID ++    K +QF +   ++  M + + +      
Sbjct: 84  ALSLFHYAKTLPNPPLSHSSFTLLIDTMA----KVRQFDVAWQLIVEMDQRHHLTPTPST 139

Query: 158 LLMILKQYT----EKIKVKTQPEINALN----------LLLDALCKCGLVDYAETICKRV 203
            L ++++       +  V+   +I+A +          +LLD LCK G V  A  +  + 
Sbjct: 140 FLTLIRRLICAGLTRQAVRAFHDIDAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFNKN 199

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA---- 247
           K+   P    Y +L                L EMI  G  P+  TYN  ++  C+     
Sbjct: 200 KHTFPPTVKMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLH 259

Query: 248 ------RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
                 R +  A ++F+ MR  G     P   +++I++    +  + +     L  M   
Sbjct: 260 PEERFERTIRNAEEVFDQMRESGI---EPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEK 316

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G  P+V  Y  V++ +   G +E+A + L EM   G  P   TYNCF K     K+G+ A
Sbjct: 317 GICPNVVMYTSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESA 376

Query: 362 LRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           LR++ RM E G C PS  TY +LI M+  L       E W +M + G   D+D Y V+I 
Sbjct: 377 LRMFKRMKEDGLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIH 436

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           GL +  +  EAC    E++  G  LP +
Sbjct: 437 GLCERQRWREACHYFVEMIENGF-LPLK 463


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 201/436 (46%), Gaps = 41/436 (9%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           V DV  + + I    +    +++ L+   V  +++ VV VL R + + + AF FF+WAG 
Sbjct: 98  VKDVKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGK 157

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN---KVFVPVDVLLMILKQ 164
           Q  Y H    Y+ MI +L     K ++F    ++++ M+R      +  P  +L+MI K 
Sbjct: 158 QPGYDHSVREYHSMISVLG----KMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKY 213

Query: 165 -------------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211
                        Y  K +   Q  +     LL ALC+   V  AE +    KN    + 
Sbjct: 214 CAVHDVGRAINTFYAFK-RFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDT 272

Query: 212 NTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
            ++NI+               +  EEM +     D  +Y + I  + K+  +     LFE
Sbjct: 273 KSFNIILNGWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLFE 332

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M+ +  T   P  K Y  +I +L +N  ++E  +L+  M ++   PD  TY  +++ +C
Sbjct: 333 QMKKRNIT---PDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLC 389

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            A K++EA +    M  +G  P I T++ F ++L   +  +E   L  +M E+GC P+++
Sbjct: 390 KARKIDEAKEIFNVMLERGISPSIRTFHAFFRIL---RVKEEVFELLDKMKELGCNPTIE 446

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY MLI  +    + D     W+ M + G   D  +Y V+I GLF   KVEEA     E+
Sbjct: 447 TYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEM 506

Query: 439 VNKGLKLPYRKFDSYL 454
             KG  LP  K +S L
Sbjct: 507 QEKGF-LPEPKTESML 521


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 168/351 (47%), Gaps = 34/351 (9%)

Query: 125 LSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT------EKIKVKTQ---- 174
           L  + + +KQF L+   L  M+      +  ++  +I + Y       + I+   Q    
Sbjct: 93  LGFSAHSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDF 152

Query: 175 ---PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GM 219
                +  ++ LL  LCK   V  A+    +V  +V PNA TY+IL              
Sbjct: 153 GVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEAR 212

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  EEM + G A D   YN+ ++  CK   V EA  LF   R  GS   +P A +Y+I I
Sbjct: 213 KLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLF---REMGSNGLAPDACSYSIFI 269

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A  + + +   F +L  M     +P+V TY  +++ +C + KV+EAY+ L+EM  +G  
Sbjct: 270 RAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVS 329

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+ +YN      CD+   ++ALRL  RM +  C P   TYNM++ M   +G  D   + 
Sbjct: 330 PDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDV 389

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNKGLKLPY 447
           W  M++RG      TY VM+ G   C    K+EEAC   E +++ G+  PY
Sbjct: 390 WGGMEERGFYPAASTYAVMVHGF--CKKKGKLEEACKYFEMMIDDGIP-PY 437



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +    C A    +A +   +MG+ G    +   +  L VLC  K+  +A   + + + V 
Sbjct: 129 IFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDK-VNVE 187

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+ +TY++L+  + ++G+   A + + EM +RGCA DV  Y  +++ L     V+EA 
Sbjct: 188 VMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAY 247

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            L  E+ + GL      +  ++     + D+ +  ++ D MR++
Sbjct: 248 KLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRY 291


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 198/444 (44%), Gaps = 59/444 (13%)

Query: 41  FDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           FDE+S  ++      EAI+           A+D   V ++   V  +L+RF  +   AF 
Sbjct: 96  FDEASRILTSCFASPEAIV----------IAMDCCPVRVSDRMVDKILRRFGSDWVAAFG 145

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FFMWAG Q+ Y H   +YN M+DIL     K KQF L+  ++  M     + V +  +  
Sbjct: 146 FFMWAGAQEGYRHSADSYNSMVDILG----KFKQFDLMWGLISQMDEIGGL-VSLATMTK 200

Query: 161 ILKQ------YTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
           ++++      +T+ I    +        +  A+N+LLD LCK   V  A    + ++  V
Sbjct: 201 VMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSV 260

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            P+ +++N L                ++EM + G  P   TY + I+ +C  +       
Sbjct: 261 PPDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYA 320

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           +   MR+KG     P   TY I++ AL +  R +E   +   +   GC PD S Y  ++ 
Sbjct: 321 ILNEMRSKGC---PPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIY 377

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            +  AG++E+A   +++M   G  P + T+N  +   CD+   + AL++  +M E  C P
Sbjct: 378 ILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKP 437

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHE--------MDKRGCAQDVDTYCVMIDGLFDCSK 427
            ++TY  L+ +  +          W +        M ++    D  TY +++  L    K
Sbjct: 438 DIKTYTPLLKLCCK--------RQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGK 489

Query: 428 VEEACFLLEEVVNKGLKLPYRKFD 451
             ++C  LEE+V KG       FD
Sbjct: 490 PAQSCLFLEEMVLKGFAPKKETFD 513



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 4/248 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+     +YN+ +D   K +       L   M   G  +S     T   ++  L    
Sbjct: 153 QEGYRHSADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVS---LATMTKVMRRLAGAS 209

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  +       M   G + D +    +L+ +C    V+ A    +E+     PPD  ++N
Sbjct: 210 RWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQEL-RGSVPPDESSFN 268

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C  +  +EA  +   M E G  PSV TY  LI  Y    +    +   +EM  +
Sbjct: 269 TLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSK 328

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  +V TY +++  L    + +EA  + ++V   G       ++S +  L   G L   
Sbjct: 329 GCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDA 388

Query: 467 HKLSDHMR 474
           + + D MR
Sbjct: 389 NSVVDKMR 396


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 238/506 (47%), Gaps = 41/506 (8%)

Query: 1   MTLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLV--CKVFDESSDSVSDVAKLYEAI 58
           M L  L   + ++YA  +  I   S       V S +   +   E++    DV  ++  I
Sbjct: 8   MILKPLSLQSSSRYAPSISTIGLNSNPQNPSSVFSRLYWSETIAETTVDNGDVETVFR-I 66

Query: 59  IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR---FFMWAGHQDNYAHEP 115
           + ++++  N++++L S GV L+ D +  VL+R +F     F+   FF +   +  + H P
Sbjct: 67  VSSASSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQALAFFNYTNKRKGFYHTP 126

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV-PVDVLLMI--------LKQYT 166
            + + M+ IL     ++++F  +  +L  M+R ++  + P  V +++        +KQ  
Sbjct: 127 FSLDTMLYILG----RSRRFDQIWELLVDMRRKDQSLISPRSVQVVLGRIAKVCSVKQTV 182

Query: 167 EKIKV--KTQPEINA--LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQ 220
           E  +   K  PE +    N LL  LC+   +  A  +   +K+  +P+  T+NIL  G +
Sbjct: 183 ESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRTFNILLSGWK 242

Query: 221 TLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
           + EE       M +MG  PD  +YN  ID +CK R +  A  + + MR +     SP   
Sbjct: 243 SAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQI---SPDVI 299

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I  L    + ++   +L  M   GC PDV+ Y   +   C+A ++ +A   ++EM
Sbjct: 300 SYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIANRLGDADGLMDEM 359

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG  P+  TYN F +    + +   +  LY RM + GC P+ Q+   L  ++    + 
Sbjct: 360 VGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQSCMFLTRLFRRQEKV 419

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKLPYRKF 450
           + A E W++M ++G    +    V+ D L D  K   VE+ C  + E  +K   + +R+ 
Sbjct: 420 EMALELWNDMVEKGFGSYILVSDVLFDMLCDMGKLVEVEKCCLQMIEKGHKPSNVSFRRI 479

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRKF 476
              LM+L+   +  A+  L++ M  F
Sbjct: 480 -KVLMELANKHE--ALQNLTEKMAMF 502


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 197/436 (45%), Gaps = 41/436 (9%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           V DV  +   +   S     M+  ++  GV ++ + V+ VL R + + + AF FF+WAG 
Sbjct: 94  VQDVTIIMSILHQLSGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWEAAFTFFLWAGR 153

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM---KRNNKVFVPVDVLLMILKQ 164
           Q  Y+H    Y+ MI IL     K ++F    +++D M   K    +  P  +L+MI K 
Sbjct: 154 QLGYSHSVREYHAMISILG----KMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKY 209

Query: 165 -------------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211
                        Y  K + K    I+    LL ALC+   V  AE +    K+    N 
Sbjct: 210 CAVHDVGRAINTFYAHK-RFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKDVFPFNT 268

Query: 212 NTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
            ++NI+               +   EM +     D  +Y + I  + KA  + +   L+ 
Sbjct: 269 KSFNIVLNGWCNVIGSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYN 328

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M+  G     P  K Y  +I AL +   + E  +L+  M   G  P+  TY  +++ +C
Sbjct: 329 QMKEVGI---EPDRKIYNSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLC 385

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            A K++EA    +EM   G+ P I TY+ F + L   + G+E   L   M ++GC P++ 
Sbjct: 386 RARKIDEARGLFDEMLQHGHSPTIRTYHAFFRSL---RTGEEVFALLENMRKLGCHPTID 442

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY MLI  +    + D  F+ W+++ + G   D  +Y V+I GLF   K+EEA     ++
Sbjct: 443 TYIMLIRKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADM 502

Query: 439 VNKGLKLPYRKFDSYL 454
             K L LP  K D  L
Sbjct: 503 KEKQL-LPDPKLDEML 517



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 119/303 (39%), Gaps = 39/303 (12%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI------- 279
           Q+G++     Y+  I    K R    A  L + MR   + IS  T +T  IMI       
Sbjct: 154 QLGYSHSVREYHAMISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKYCAVH 213

Query: 280 -VALVQN--------------DRMEECFSLL---------GHMI--NSGCLP-DVSTYKE 312
            V    N              D  +   S L          H++  N    P +  ++  
Sbjct: 214 DVGRAINTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 273

Query: 313 VLEGMC-LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           VL G C + G   EA +   EM  +    D+V+Y   +       N  +  +LY +M EV
Sbjct: 274 VLNGWCNVIGSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEV 333

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P  + YN +I    +      A      M+++G A +  TY  +I  L    K++EA
Sbjct: 334 GIEPDRKIYNSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEA 393

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY-NPVIARRLALNQK 490
             L +E++  G     R + ++   L    ++ A   L ++MRK   +P I   + L +K
Sbjct: 394 RGLFDEMLQHGHSPTIRTYHAFFRSLRTGEEVFA---LLENMRKLGCHPTIDTYIMLIRK 450

Query: 491 RVR 493
             R
Sbjct: 451 FCR 453


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 168/349 (48%), Gaps = 16/349 (4%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           ++LD + R  K+   + +   +L + +  +  +  P +   ++L+D LCK   V  A  +
Sbjct: 154 TLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVEL 213

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
            + +K +   P+  TY IL              + L EM+  G  P+  TYN+ +   C+
Sbjct: 214 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 273

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           AR V++A  L   M  +G T   P   TY  +I  L +  R+++  ++L  MI+ G  PD
Sbjct: 274 ARRVSDALALMRDMTCRGCT---PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 330

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +  Y  ++ G+C A +V+E+   L    + G  PD+VTY+  +  LC +   DEA RL  
Sbjct: 331 LMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL 390

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            +   GC P V  Y+ LI    + G+ D AF+ +  M   GC  DV TY  +IDGL    
Sbjct: 391 YVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAG 450

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +V+EA  LL  +V  G       ++S +  L  +  L    +L + M +
Sbjct: 451 RVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMER 499



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 160/357 (44%), Gaps = 38/357 (10%)

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM---------------LDYMKRNNKVFV 153
           D  +   + Y+++ID L      ++   L+ SM               +D + + +KV  
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 154 PVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNAN 212
             +VL        E +     P +   N LL  LC+   V  A  + + +  +   PN  
Sbjct: 245 AWEVL-------REMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVV 297

Query: 213 TYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           TY  L                L +MI  G  PD   YN  I+  CKA  V E+      +
Sbjct: 298 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDES---IALL 354

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R   S    P   TY+ +I  L +++R++E   LL ++ + GC PDV  Y  +++G+C A
Sbjct: 355 RRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKA 414

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GKV+EA+   E M   G   D+VTY+  +  LC     DEA  L  RM+ +G  PS  TY
Sbjct: 415 GKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTY 474

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
           N LI    +L   D A E   EM++  CA    TY ++I G+    +V+ A  LLE+
Sbjct: 475 NSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQ 531



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 146/330 (44%), Gaps = 23/330 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYA-----ETICKR---VKNKVKPNANTYNIL---- 217
            V+  P +   N LLD L + G ++ A     E + +R   + ++  PN  TY++L    
Sbjct: 142 SVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGL 201

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++ LE M   G +PD  TY   +D  CK   V  A ++   M   G     
Sbjct: 202 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV--- 258

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  ++  L +  R+ +  +L+  M   GC P+V TY  +++G+C  G+V++A   
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L +M +KG  PD++ YN  +  LC     DE++ L  R +  G  P V TY+ +I     
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 378

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
               D A      +  RGC  DV  Y  +IDGL    KV+EA  L E +   G       
Sbjct: 379 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVT 438

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           + + +  L   G +   H L   M +   P
Sbjct: 439 YSTLIDGLCKAGRVDEAHLLLARMVRMGTP 468



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L EM   G  P+  TYN+ ID  CK      A +LFE M+   S   SP+  TY  
Sbjct: 98  ALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMK---SVECSPSMVTYNT 154

Query: 278 MIVALVQNDRMEECFSLL-------GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           ++  L +  ++E   +L         H ++  C P+V TY  +++G+C A +V +A + L
Sbjct: 155 LLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELL 214

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           E M  +G  PD++TY   +  LC       A  +   M++ GC P++ TYN L+      
Sbjct: 215 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRA 274

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
                A     +M  RGC  +V TY  +IDGL    +V++AC +L ++++KG
Sbjct: 275 RRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKG 326



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 136/327 (41%), Gaps = 59/327 (18%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P +     L+D LCK G V D    +   +     P+   YN+L             +  
Sbjct: 294 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 353

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L   +  G  PD  TY++ I   C++  + EA  L  +++++G     P    Y+ +I  
Sbjct: 354 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC---PPDVILYSTLIDG 410

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  +++E F L   M   GC  DV TY  +++G+C AG+V+EA+  L  M   G PP 
Sbjct: 411 LCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPS 470

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA----- 396
            +TYN  +K LCD  + DEA+ L   M    C PS  TYN+LI     +   D A     
Sbjct: 471 TMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLE 530

Query: 397 -----------------------------------FETWHEMDKRGCAQDVDTYCVMIDG 421
                                               + + EM   G   D  TY ++++G
Sbjct: 531 QAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEG 590

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYR 448
           L     + E   L   V+++ ++L YR
Sbjct: 591 LKKSKDLHE---LRHLVLDQMVQLGYR 614



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 10/218 (4%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD +TY   +  FC+   + +A   F+ MR+K      P     +I+I  L +  R  + 
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLV---PNVFLCSILIDGLCKAKRSIDA 63

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
                 M  SG + D   Y  +L G+    ++++A   L EM + G  P++VTYN  +  
Sbjct: 64  LRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRG--- 407
           LC N   D A  L+  M  V C PS+ TYN L+   F  G+ + A   + EM D+R    
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDM 183

Query: 408 ---CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              C+ +V TY V+IDGL   ++V +A  LLE +  +G
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARG 221



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 126/276 (45%), Gaps = 32/276 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP++     LL   C+ G +D A+                      +  +EM      P+
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQ----------------------RCFDEMRSKNLVPN 43

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            F  +  ID  CKA+   +A   F  M  +GS I + T   Y  ++  L +  R+++  +
Sbjct: 44  VFLCSILIDGLCKAKRSIDALRCFRAM--QGSGIVADTV-IYTALLSGLWKEKRLDQALA 100

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +L  M + GC P+V TY  +++G+C   + + A +  E M +    P +VTYN  L  L 
Sbjct: 101 ILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLF 160

Query: 354 DNKNGDEALRLYGRMIEV-------GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                + A+ L+  M++         C P+V TY++LI    +      A E    M  R
Sbjct: 161 RTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKAR 220

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           GC+ DV TY +++DGL   SKV  A  +L E+++ G
Sbjct: 221 GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 256



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%)

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           I  P   TYA ++    +   +++       M +   +P+V     +++G+C A +  +A
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +    M   G   D V Y   L  L   K  D+AL +   M + GC P+V TYN LI  
Sbjct: 64  LRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             +  EPD A E +  M    C+  + TY  ++DGLF   K+E A  L +E++++
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDR 178



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 57/136 (41%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+ TY   L+  C     D+A R +  M      P+V   ++LI    +      A   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           +  M   G   D   Y  ++ GL+   ++++A  +L E+ + G +     ++S +  L  
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 460 IGDLGAIHKLSDHMRK 475
             +     +L +HM+ 
Sbjct: 127 NNEPDRAQELFEHMKS 142


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 181/382 (47%), Gaps = 28/382 (7%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL---------KQYT 166
           + YN ++D L  T    +   L   MLD  +R++ V +  ++L+  L          ++ 
Sbjct: 46  VTYNTLLDGLFRTGKLERAMALFQEMLD--RRSHDV-ISFNILVTGLCRAGKIETALEFF 102

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
            K+  +  P +   ++L+D LCK   V  A  + + +K +   P+  TY IL        
Sbjct: 103 RKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKES 162

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L EM+  G  P+  TYN+ +   C+AR V++A  L   M  +G T   P   
Sbjct: 163 KVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCT---PNVV 219

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L +  R+++  ++L  MI+ G  PD+  Y  ++ G+C A +V+E+   L   
Sbjct: 220 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 279

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            + G  PD+VTY+  +  LC +   DEA RL   +   GC P V  Y+ LI    + G+ 
Sbjct: 280 VSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKV 339

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D AF+ +  M   GC  DV TY  +IDGL    +V+EA  LL  +V  G       ++S 
Sbjct: 340 DEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSL 399

Query: 454 LMQLSVIGDLGAIHKLSDHMRK 475
           +  L  +  L    +L + M +
Sbjct: 400 IKGLCDLNHLDEAIELVEEMER 421



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 172/389 (44%), Gaps = 43/389 (11%)

Query: 84  VVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM-- 141
           V G+ +  + E  + F    +    D  +   + Y+++ID L      ++   L+ SM  
Sbjct: 86  VTGLCRAGKIETALEF----FRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKA 141

Query: 142 -------------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
                        +D + + +KV    +VL        E +     P +   N LL  LC
Sbjct: 142 RGCSPDVITYTILVDGLCKESKVAAAWEVL-------REMLDAGCVPNLVTYNSLLHGLC 194

Query: 189 KCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNF 235
           +   V  A  + + +  +   PN  TY  L                L +MI  G  PD  
Sbjct: 195 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 254

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            YN  I+  CKA  V E+      +R   S    P   TY+ +I  L +++R++E   LL
Sbjct: 255 IYNMLINGLCKADQVDES---IALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLL 311

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
            ++ + GC PDV  Y  +++G+C AGKV+EA+   E M   G   D+VTY+  +  LC  
Sbjct: 312 LYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKA 371

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              DEA  L  RM+ +G  PS  TYN LI    +L   D A E   EM++  CA    TY
Sbjct: 372 GRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTY 431

Query: 416 CVMIDGLFDCSKVEEACF-LLEEVVNKGL 443
            ++I G+    +V+ A     +E+++ G+
Sbjct: 432 NILIHGMCRMERVDSAALDYFQEMIDNGV 460



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 15/316 (4%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           ++ + N+L+  LC+ G ++ A    +++ ++  PN  TY++L             ++ LE
Sbjct: 78  DVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLE 137

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M   G +PD  TY   +D  CK   V  A ++   M   G     P   TY  ++  L 
Sbjct: 138 SMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV---PNLVTYNSLLHGLC 194

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R+ +  +L+  M   GC P+V TY  +++G+C  G+V++A   L +M +KG  PD++
Sbjct: 195 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 254

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            YN  +  LC     DE++ L  R +  G  P V TY+ +I         D A      +
Sbjct: 255 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYV 314

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             RGC  DV  Y  +IDGL    KV+EA  L E +   G       + + +  L   G +
Sbjct: 315 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRV 374

Query: 464 GAIHKLSDHMRKFYNP 479
              H L   M +   P
Sbjct: 375 DEAHLLLARMVRMGTP 390



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 18/284 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P +   N L+D LCK    D A+ + + +K+ +  P+  TYN L             M 
Sbjct: 7   EPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMA 66

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+    + D  ++N  +   C+A  +  A + F  M  +     SP   TY+++I 
Sbjct: 67  LFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEFFRKMDDR----CSPNVITYSVLID 121

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L + +R+ +   LL  M   GC PDV TY  +++G+C   KV  A++ L EM + G  P
Sbjct: 122 GLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVP 181

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  L  LC  +   +AL L   M   GC P+V TY  LI    ++G    A    
Sbjct: 182 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 241

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +M  +G   D+  Y ++I+GL    +V+E+  LL   V+ G+K
Sbjct: 242 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIK 285



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 144/284 (50%), Gaps = 14/284 (4%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GM-------Q 220
            V+  P +   N LLD L + G ++ A  + + + ++   +  ++NIL  G+        
Sbjct: 38  SVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIET 97

Query: 221 TLEEMIQMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            LE   +M    +P+  TY+  ID  CKA  V++A +L E M+ +G    SP   TY I+
Sbjct: 98  ALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARG---CSPDVITYTIL 154

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L +  ++   + +L  M+++GC+P++ TY  +L G+C A +V +A   + +M  +G 
Sbjct: 155 VDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGC 214

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P++VTY   +  LC      +A  +   MI+ G  P +  YNMLI+   +  + D +  
Sbjct: 215 TPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIA 274

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
                   G   DV TY  +I GL   ++++EAC LL  V ++G
Sbjct: 275 LLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 318



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 113/251 (45%), Gaps = 36/251 (14%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M   G  P+  TYN+ ID  CK      A +LFE M+   S   SP+  TY  ++  L +
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMK---SVECSPSMVTYNTLLDGLFR 57

Query: 285 NDRMEECFSLLGHMI---------------------------------NSGCLPDVSTYK 311
             ++E   +L   M+                                 +  C P+V TY 
Sbjct: 58  TGKLERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYS 117

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +++G+C A +V +A + LE M  +G  PD++TY   +  LC       A  +   M++ 
Sbjct: 118 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA 177

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC P++ TYN L+           A     +M  RGC  +V TY  +IDGL    +V++A
Sbjct: 178 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 237

Query: 432 CFLLEEVVNKG 442
           C +L ++++KG
Sbjct: 238 CAMLADMIDKG 248


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 191/400 (47%), Gaps = 35/400 (8%)

Query: 76  GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQF 135
            +P++ + V  +L RF+ + K A   F WA  +  Y H P AY++M+DIL     K KQ 
Sbjct: 73  AIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILG----KLKQV 128

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMI----LKQYTEKIKV-------KTQPEINALNLLL 184
             + ++++ M++ N V +      M       ++ + ++V       + +    ++NLLL
Sbjct: 129 DKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLL 188

Query: 185 DALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP 232
           D LCK   V+ A  I   +K  + PN +T+NI                T++EM   G  P
Sbjct: 189 DTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRP 248

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
              +Y+T I ++C+     +  +L + M+ +G    +P   TY  ++ +L + ++ EE  
Sbjct: 249 CVISYSTIIQSYCRQSNFRKVYELLDDMQAQG---CAPNVVTYTTIMCSLTKVEQFEEAL 305

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE-EMGNKGYPPDIVTYNCFLKV 351
            +   M + GC PD   Y  ++  +  AG++ EA +  E EM   G PP+  TYN  + +
Sbjct: 306 QIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAM 365

Query: 352 LCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRGC 408
            C +    +AL L  R IE    C P +QTY  ++   F+ G+ D       +M +K   
Sbjct: 366 FCHHSQEQKALNLL-REIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHL 424

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + DV  Y ++I GL   +K E    L EE+V K +   Y+
Sbjct: 425 SLDVSAYTLLIHGLCRANKCEWGYNLFEEMVGKAITPRYK 464


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 196/419 (46%), Gaps = 36/419 (8%)

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
           ++++  + +K L+   + ++   VV VL+R      IA  FF WA  Q  + +   +YN 
Sbjct: 103 STHSGSHADKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQKGFKYNTESYNA 162

Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT------- 173
           +I+ L     K KQF+L+ S+++ MK  ++  +  D   +I +++    KV+        
Sbjct: 163 LIEALG----KIKQFKLIRSLVNEMK--SRKLLNKDTFALISRRHARARKVEEAIEAFER 216

Query: 174 ------QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--------G 218
                 + E +  N LLD LCK   V+ A  +  ++K  +  P+  +Y IL         
Sbjct: 217 MEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHN 276

Query: 219 MQTLEEM-IQM---GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
           +  L+E+ ++M   G  PD  TY   I  +CKA+    A +LF  M  K      PT   
Sbjct: 277 LLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNC---KPTPHV 333

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L    R+ E         + G  P+  TY  ++   C + ++++A++ ++EM 
Sbjct: 334 YCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMR 393

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEP 393
                P+  TY+  L  L   +  +EA   + +M  E GC P+V TY +++ M+      
Sbjct: 394 KHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRV 453

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
           D A + W +M  +G    +  Y  +I  L   +K+ EAC   +E+++ G++ P + F +
Sbjct: 454 DLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSN 512



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 18/249 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY----NILG--------MQ 220
           +P++    +L+ A CK    D A  +   ++ K  KP  + Y    N LG        ++
Sbjct: 293 EPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALE 352

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E     G  P+  TYN+ +  +C +  + +A  + + MR   +    P ++TY I++ 
Sbjct: 353 FFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSA---GPNSRTYDIILH 409

Query: 281 ALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            L++  R  E +     M N  GC P VSTY+ ++   C   +V+ A +  ++M  KG  
Sbjct: 410 HLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVL 469

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P +  Y+  +  LC      EA + +  M++ G  P  + ++ L     + G+ D A   
Sbjct: 470 PGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNL 529

Query: 400 WHEMDK-RG 407
             +++K RG
Sbjct: 530 ARKINKLRG 538


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 148/293 (50%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           Y E ++   +P++ + N L++ LC  G  + A  + K++ +N  KPN  TYN +      
Sbjct: 186 YNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCK 245

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  M  L EM+  G  PD  TYN+ +   C    + EA  LF+ M   G     P 
Sbjct: 246 DRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGC---KPD 302

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY I+I +L ++  + +    L  M++ G  PDV TY  +L G+C  G++ EA +  +
Sbjct: 303 VVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFK 362

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  KG  PD+V YN  +  LC ++  ++A+     M++ G  P+  TY+ ++  +  LG
Sbjct: 363 KMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLG 422

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + D A + + EM  R    +  T+ +++DGL     V EA ++ E +  KG++
Sbjct: 423 QLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVE 475



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 202/435 (46%), Gaps = 51/435 (11%)

Query: 55  YEAIIDNSNAYDNMEKALDSL------GVP---LTTDSVV-GVLQRFQFEEKIAFRFFMW 104
           Y  IID+      +  A+D L      G+P   +T +S+V G+    Q  E  A R F  
Sbjct: 236 YNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNE--ATRLFKR 293

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL------ 158
              Q+    + + YN++ID L    YK    RLV    D++       +P DV+      
Sbjct: 294 M-EQNGCKPDVVTYNIIIDSL----YKD---RLVNDAADFLSEMVDQGIPPDVVTYTTIL 345

Query: 159 --LMILKQYTEKIKV-------KTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVK 208
             L  L Q  E I++         +P++ A N ++D+LCK  LV D  E + + V   + 
Sbjct: 346 HGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIP 405

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PNA TY+ +              Q  +EM+     P+  T++  +D  C+  MV+EA  +
Sbjct: 406 PNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWV 465

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           FE M  KG     P   TY  ++       +M E   +   M+  GC PD+ +Y  ++ G
Sbjct: 466 FETMTEKGV---EPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILING 522

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C + ++++A   L +M  K   P+ VTYN  +K LC      +A  L+ +M   G  P+
Sbjct: 523 YCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPT 582

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           + TY++L++   + G  D A + +  M ++    D+  Y ++I+G+F   K+E A  L  
Sbjct: 583 LMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFS 642

Query: 437 EVVNKGLKLPYRKFD 451
           ++   G++ P R ++
Sbjct: 643 KLSADGIQPPGRTYN 657



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 23/332 (6%)

Query: 162 LKQYTEKIKVKTQPE-------INALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANT 213
           +KQY+  + +  Q +       + +LN+L++ LC+   VD+A ++  K  K  ++P+  T
Sbjct: 106 MKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVIT 165

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +  L             ++   EM++ GH PD  +YNT I+  C +     A  +F+ M 
Sbjct: 166 FTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKME 225

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P   TY  +I +L ++  + +    L  M+  G  PD  TY  ++ G+C  G
Sbjct: 226 QNGC---KPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLG 282

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++ EA +  + M   G  PD+VTYN  +  L  ++  ++A      M++ G  P V TY 
Sbjct: 283 QLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYT 342

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            ++     LG+ + A   + +M+++GC  DV  Y  +ID L     V +A   L E+V++
Sbjct: 343 TILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDR 402

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G+      + + L     +G L    +L   M
Sbjct: 403 GIPPNAVTYSTILHGFCNLGQLDEATQLFKEM 434



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 170/388 (43%), Gaps = 38/388 (9%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL--------LMILKQYTE 167
           + YN +ID L          RLV   +D++       +P D +        L  L Q  E
Sbjct: 234 VTYNTIIDSLCKD-------RLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNE 286

Query: 168 KIKV-------KTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL-- 217
             ++         +P++   N+++D+L K  LV D A+ + + V   + P+  TY  +  
Sbjct: 287 ATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILH 346

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      ++  ++M Q G  PD   YNT ID+ CK R+V +A +    M  +G   
Sbjct: 347 GLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGI-- 404

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P A TY+ ++       +++E   L   M+    +P+  T+  +++G+C  G V EA 
Sbjct: 405 -PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEAR 463

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              E M  KG  P+I TYN  +   C     +EA +++  M+  GC P + +YN+LI+ Y
Sbjct: 464 WVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGY 523

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
                 D A     +M  +    +  TY  ++ GL    ++ +A  L +++ + G+    
Sbjct: 524 CNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTL 583

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             +   L  L   G L    KL   M++
Sbjct: 584 MTYSILLNGLCKHGHLDEALKLFKSMKE 611



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 162/378 (42%), Gaps = 35/378 (9%)

Query: 55  YEAIIDN-------SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI--AFRFFMWA 105
           Y  IID+       ++A D + + +D  G+P    +   +L    +  ++  A R F   
Sbjct: 306 YNIIIDSLYKDRLVNDAADFLSEMVDQ-GIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDV 157
             Q     + +AYN +ID L   +        +  M+D     N V        F  +  
Sbjct: 365 -EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQ 423

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           L    + + E +     P     ++L+D LC+ G+V  A  + + +  K V+PN  TYN 
Sbjct: 424 LDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNA 483

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L              +  E M+  G APD  +YN  I+ +C +R + +A  L   M  K 
Sbjct: 484 LMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKK 543

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
            T   P   TY  ++  L    R+ +   L   M +SG LP + TY  +L G+C  G ++
Sbjct: 544 LT---PNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLD 600

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EA K  + M  K   PDI+ Y   ++ +      + A  L+ ++   G  P  +TYN++I
Sbjct: 601 EALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMI 660

Query: 385 SMYFELGEPDGAFETWHE 402
               + G  D A+E + +
Sbjct: 661 KGLLKEGLSDEAYELFRK 678



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 3/241 (1%)

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           ++ N  I+  C+   V  A  ++  M   G     P   T+  +I  +    +++    L
Sbjct: 129 YSLNILINCLCRLNHVDFAVSVWGKMFKLGI---QPDVITFTTLINGVCNEGKIKVAVEL 185

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+ SG  PDV +Y  ++ G+C +G    A    ++M   G  P++VTYN  +  LC 
Sbjct: 186 YNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCK 245

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           ++  ++A+     M+  G  P   TYN ++     LG+ + A   +  M++ GC  DV T
Sbjct: 246 DRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVT 305

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           Y ++ID L+    V +A   L E+V++G+      + + L  L  +G L    +L   M 
Sbjct: 306 YNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKME 365

Query: 475 K 475
           +
Sbjct: 366 Q 366



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V++A      M      P IV +  FL  +   K     + L  +M   G   +V + N+
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+    L   D A   W +M K G   DV T+  +I+G+ +  K++ A  L  E+V  G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 152/312 (48%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N L+DA CK G +D A  + K + +K ++PN  +YN++              + 
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 306

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM   G  PD  TYNT ++ +CK     +A  +   M   G    SP+  TY  +I +
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGV---SPSVVTYTALINS 363

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +   +         M   G  P+  TY  +++G    G + EAY+ L EM   G+ P 
Sbjct: 364 MCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 423

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN F+   C  +  +EAL +   M+E G  P V +Y+ +IS +   GE D AF+   
Sbjct: 424 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQ 483

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM ++G + D  TY  +I GL +  ++ EAC L +E+++ GL      + + +    V G
Sbjct: 484 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 543

Query: 462 DLGAIHKLSDHM 473
           DL     L D M
Sbjct: 544 DLNKALHLHDEM 555



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 179/411 (43%), Gaps = 42/411 (10%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMI----DILSS 127
           LDSL    T  S    L + QF++ +  +F  WA +   +       +L I     +  +
Sbjct: 48  LDSLSSRFTPQSASYFLLKSQFDQTLTLKFLTWARNHPFFDSHCKCLSLHILTRFKLYKT 107

Query: 128 TKYKAKQFRLVCS----------MLDYMKRNNKVFVPVDVL------LMILKQYTEKIKV 171
            +  A++  L  S          + D     N      D++      L ++ Q    I +
Sbjct: 108 AQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINL 167

Query: 172 KTQ----PEINALNLLLDALCKC-GLVDYA--ETICKRVKNKVKPNANTYNIL------- 217
                  P + + N +LDA+ +  G V  +  E   + ++++V PN  TYNIL       
Sbjct: 168 AKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSV 227

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                G+    EM + G  P+  TYNT ID +CK   + EA  L + M +KG     P  
Sbjct: 228 GELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKG---MQPNL 284

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y ++I  L +   M+E + +L  M   G  PD  TY  +L G C  G   +A     E
Sbjct: 285 ISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAE 344

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  P +VTY   +  +C  +N + A+  + +M   G  P+ +TY  LI  +   G 
Sbjct: 345 MVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGL 404

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + A+   +EM + G +  V TY   I G     ++EEA  +++E+V KGL
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 455



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 133/278 (47%), Gaps = 16/278 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N LL+  CK G    A  I  + V+N V P+  TY  L             M+ 
Sbjct: 317 PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEF 376

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M   G  P+  TY T ID F +  ++ EA  +   M   G    SP+  TY   I  
Sbjct: 377 FDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF---SPSVVTYNAFIHG 433

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
               +RMEE   ++  M+  G  PDV +Y  ++ G C  G+++ A++  +EM  KG  PD
Sbjct: 434 HCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 493

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTY+  ++ LC+ +   EA  L   M+++G  P   TY  LI+ Y   G+ + A     
Sbjct: 494 AVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD 553

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           EM  +G   D  TY V+I+GL   ++  EA  LL +++
Sbjct: 554 EMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 591



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 20/305 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D    +LK  + K     QP + + N++++ LC+ G +  A  I + +  K   P+  T
Sbjct: 265 IDEAFGLLKSMSSK---GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L             +    EM++ G +P   TY   I++ CKAR +  A + F+ MR
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR 381

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +G     P  +TY  +I    +   + E + +L  M  SG  P V TY   + G C+  
Sbjct: 382 IRGL---RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 438

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++EEA   ++EM  KG  PD+V+Y+  +   C     D A ++   M+E G  P   TY+
Sbjct: 439 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 498

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI    E+     A +   EM   G   D  TY  +I+       + +A  L +E+++K
Sbjct: 499 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 558

Query: 442 GLKLP 446
           G  LP
Sbjct: 559 GF-LP 562



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 42/264 (15%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTE--AADLF-EFMRTKGSTISSPTAKTYAIMIVALVQN 285
           G  P   +YN+ +D   ++R   +  A +++ E +R++     SP   TY I+I      
Sbjct: 172 GFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSR----VSPNVYTYNILIRGFCSV 227

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKE--------------------------------- 312
             +++     G M  +GCLP+V TY                                   
Sbjct: 228 GELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISY 287

Query: 313 --VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G+C  G ++EA++ LEEMG KG+ PD VTYN  L   C   N  +AL ++  M+ 
Sbjct: 288 NVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR 347

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  PSV TY  LI+   +    + A E + +M  RG   +  TY  +IDG      + E
Sbjct: 348 NGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNE 407

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYL 454
           A  +L E+   G       +++++
Sbjct: 408 AYRILNEMTESGFSPSVVTYNAFI 431



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 38/312 (12%)

Query: 164 QYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---- 217
           ++ ++++++  +P       L+D   + GL++ A  I   + ++   P+  TYN      
Sbjct: 375 EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGH 434

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +  ++EM++ G APD  +Y+T I  FC+   +  A  + + M  KG    S
Sbjct: 435 CVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV---S 491

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P A TY+ +I  L +  R+ E   L   M++ G  PD  TY  ++   C+ G + +A   
Sbjct: 492 PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL 551

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---- 385
            +EM +KG+ PD VTY+  +  L       EA RL  ++I     PS  TY+ LI     
Sbjct: 552 HDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSN 611

Query: 386 --------------MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                         M   + E D  FE+   M +R        Y V+I G      + +A
Sbjct: 612 IEFKSVVALIKGFCMKGLMHEADRVFES---MVERNHKPGEAVYNVIIHGHCRGGNLPKA 668

Query: 432 CFLLEEVVNKGL 443
             L +E+++ G 
Sbjct: 669 FNLYKEMIHSGF 680



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 33/254 (12%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTL--- 222
           E ++    P++ + + ++   C+ G +D A  + +  V+  V P+A TY+ L +Q L   
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSL-IQGLCEM 507

Query: 223 ----------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                     +EM+ MG  PD FTY T I+ +C    + +A  L + M  KG     P A
Sbjct: 508 RRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL---PDA 564

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE---------------GM 317
            TY+++I  L +  R  E   LL  +I    +P   TY  ++E               G 
Sbjct: 565 VTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGF 624

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C+ G + EA +  E M  + + P    YN  +   C   N  +A  LY  MI  G  P  
Sbjct: 625 CMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHT 684

Query: 378 QTYNMLISMYFELG 391
            T   LI   F+ G
Sbjct: 685 VTVITLIKALFKEG 698



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 11/243 (4%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-----RMEEC 291
           ++  + ++    M+ +A +     ++ G     P   +Y  ++ A+V++        EE 
Sbjct: 145 FDLMVKSYSHLNMIDQAVNTINLAKSSGFM---PGVLSYNSVLDAIVRSRGSVKLSAEEV 201

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           +     MI S   P+V TY  ++ G C  G++++      EM   G  P++VTYN  +  
Sbjct: 202 YR---EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDA 258

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C     DEA  L   M   G  P++ +YN++I+     G    A+E   EM  +G   D
Sbjct: 259 YCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPD 318

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
             TY  +++G        +A  +  E+V  G+      + + +  +    +L    +  D
Sbjct: 319 EVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFD 378

Query: 472 HMR 474
            MR
Sbjct: 379 QMR 381


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 160/349 (45%), Gaps = 52/349 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P +   N+L+DALCK  +V  A+ + K+ ++    PN  T+N L              + 
Sbjct: 90  PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 149

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M+  G  P+  TY+  ID  CK++   EA ++ E M+  G T   P A TY+ +I  
Sbjct: 150 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVT---PDAFTYSALIHG 206

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + D++EE   +L  M  SGC PDV  Y  ++   C +GK+ EA K L+EM  +   PD
Sbjct: 207 LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 266

Query: 342 IVTYNCFLKVLCD--------------NKNGD----------------------EALRLY 365
           +VTYN  +  LC                ++GD                      EA +L 
Sbjct: 267 VVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 326

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            RM + GC P V TY  +I    + G  + A      M + GCA +V TY  +I GL   
Sbjct: 327 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 386

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
            KV+EA  ++EE+ N G       +++ +  L V G +    +L   M+
Sbjct: 387 RKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 435



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 144/292 (49%), Gaps = 18/292 (6%)

Query: 163 KQYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           K+  E++K     P+    + L+  LCK   ++ AE + +R+      P+   Y+ +   
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +TL+EM +   +PD  TYNT ID  CK   + EA  + + M+  G  + 
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVL- 300

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+ +I  L ++D + E   LL  M  +GC PDV TY  +++G+C  G++EEA  
Sbjct: 301 -PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 359

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L+ M   G  P++VTY   +  LC  +  DEA R+   M   GC P++ TYN +++   
Sbjct: 360 LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLC 419

Query: 389 ELGEPDGAFETWHEM-DKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             G    A +    M D R  C+ D  TY  +++ L     V+EA  LLE++
Sbjct: 420 VSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 123/250 (49%), Gaps = 15/250 (6%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  TY  L             M+ LEEM + G  P+  TYN  +D  CK  MV  A D+
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            + M   G    +P   T+  ++    +   +++   LLG M+  G  P+V TY  +++G
Sbjct: 115 VKKMIEGGF---APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C + K  EA + LEEM   G  PD  TY+  +  LC     +EA ++  RM   GC P 
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V  Y+ +I  + + G+   A +T  EM K+  + DV TY  +IDGL    K+ EA  +L+
Sbjct: 232 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291

Query: 437 EVVNKGLKLP 446
           ++   G  LP
Sbjct: 292 QMQESGDVLP 301



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 113/231 (48%), Gaps = 28/231 (12%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
           LL   K   E  K +  P++   N ++D LCK G +  A+ I                  
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI------------------ 289

Query: 218 GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
               L++M + G   PD  TY+T I+  CK+ M+ EA  L + M   G    +P   TY 
Sbjct: 290 ----LDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG---CNPDVVTYT 342

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L +  R+EE   LL  M  +GC P+V TY  ++ G+C A KV+EA + +EEM N 
Sbjct: 343 TIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNA 402

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE--VGCWPSVQTYNMLIS 385
           G PP++VTYN  +  LC +    EA +L  RM +    C P   TY  +++
Sbjct: 403 GCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVN 453



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 119/272 (43%), Gaps = 14/272 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ LEEM   G APD FT+   I     A  +  A D    +R+ G     P   TY  
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD---HLRSMG---CDPNVVTYTA 62

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I A  +  ++EE   LL  M   GC P++ TY  +++ +C    V  A   +++M   G
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P+++T+N  +   C   N D+A +L G M+  G  P+V TY+ LI    +  +   A 
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK 182

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           E   EM   G   D  TY  +I GL    K+EEA  +L  +   G       + S +   
Sbjct: 183 EVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 242

Query: 458 SVIGDLGAIHKLSDHMRK--------FYNPVI 481
              G L    K    MRK         YN VI
Sbjct: 243 CKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI 274



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 6/199 (3%)

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           C A  +  A +L E M++ G    +P A T+  +I A+     ++     + H+ + GC 
Sbjct: 1   CNAGDLHAALELLEEMKSAGF---APDAFTHTPIITAMANAGDLD---GAMDHLRSMGCD 54

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P+V TY  ++     A K+EEA K LEEM  +G PP++VTYN  +  LC       A  +
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
             +MIE G  P+V T+N L+  + + G  D A +    M  +G   +V TY  +IDGL  
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 425 CSKVEEACFLLEEVVNKGL 443
             K  EA  +LEE+   G+
Sbjct: 175 SQKFLEAKEVLEEMKASGV 193



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 27/180 (15%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
           D+L+   K      K    P++     ++D LCKCG ++ AE +                
Sbjct: 317 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL---------------- 360

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 L+ M + G AP+  TY T I   CKAR V EA  + E MR  G     P   TY
Sbjct: 361 ------LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG---CPPNLVTY 411

Query: 276 AIMIVALVQNDRMEECFSLLGHMIN--SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
             M+  L  + R++E   L+  M +  + C PD +TY+ ++  +  +  V+EA + LE+M
Sbjct: 412 NTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 204/438 (46%), Gaps = 31/438 (7%)

Query: 45  SDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMW 104
           S +  D+ K+   +  +  + D + KALD  G+  T D V  +L+RF  +   A   F+W
Sbjct: 29  SGTGGDIDKVKGILKRHFPSEDAVVKALDESGINATNDLVSQLLERFSNQWITALGVFIW 88

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR-NNKV-FVPVDVLLMIL 162
           A +Q  Y H P  Y+L++DIL     K K+F ++  +++ M   N +V F  + +++  L
Sbjct: 89  AKNQTGYVHTPRLYDLVVDILG----KCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRL 144

Query: 163 KQ---YTEKI-------KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN 212
                Y + I       K + + +  ALN+++ AL K G    A ++    K+ +  +++
Sbjct: 145 ASSGMYKDVIDVLRGLEKYRVKKDTVALNMVMHALAKQGGAKDAYSVFLEFKDSITLDSH 204

Query: 213 TYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           ++NIL              +T+EEM + G  PD  +Y   I  +CK +       +   M
Sbjct: 205 SFNILIHGYCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEM 264

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
             KG     P    Y+I I AL +  ++ E   +   M  + C PD   +  ++  +  +
Sbjct: 265 GEKGC---EPDVIAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRS 321

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G++ +A+   E+M N G   D+ TYN  +   C N+ G+ AL+L  RM    C P ++TY
Sbjct: 322 GRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACANRQGNSALKLLERMEVNSCKPDLETY 381

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             L+ M  ++ +          M       D+ TY ++I  L +  K+E ACF  ++ V 
Sbjct: 382 QPLLKMCCKMKDMKVLKFLLSHMFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVL 441

Query: 441 KGLKLPYRKFDSYLMQLS 458
            G+    R ++  L +L 
Sbjct: 442 NGIVPKDRTYEILLKELG 459


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 166/363 (45%), Gaps = 24/363 (6%)

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WAG Q +Y H  L+YN ++++L+ +      +     ML      N       +  +
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSL 62

Query: 161 ILKQYTEKIKV--------KTQPEINALNLLLDALCKCGLVD-YAETICKRVKNKVKPNA 211
              Q  E+ +            P + + ++L+  LC+   VD  AE + + +    +PN 
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 212 NTYNIL-----GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            TY  L      M  L+E       M+  G  PD   YN  ID F K   + EA  LFE 
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M  KG     PT  TY  ++    +        SL   M+  GC+P++ T+  +L+G C 
Sbjct: 183 MLEKGCI---PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
            G + EA++   EM + G PPD+V+YN  ++ +C      EA RL   MI  G  P + +
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN+LI  Y + G  D A + ++E+ K G   D  +Y  +ID L    KV  A  + ++++
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMI 359

Query: 440 NKG 442
             G
Sbjct: 360 ANG 362



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 3/253 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q+ +     +YN  ++   K+         +  M   G     P   TY  ++ +L Q  
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCV---PNTYTYGYLLRSLCQAQ 66

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R EE  S+   M   GC P+V +Y  ++ G+C   KV+EA + L EM + G+ P++VTY 
Sbjct: 67  RFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYG 126

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L  LC      EA+ L+ RM+  GC P    YN+LI  + + G+   A+  + EM ++
Sbjct: 127 SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC   V TY  ++ G     +      L ++++ +G       F++ L     +GD+   
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 467 HKLSDHMRKFYNP 479
           H+L   MR    P
Sbjct: 247 HRLFLEMRSLGCP 259



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 158/390 (40%), Gaps = 64/390 (16%)

Query: 89  QRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN 148
           QRF+ E +  FR     G   N      +Y+++I  L   +   +   L+  M+D   + 
Sbjct: 66  QRFE-EARSVFRGMAAQGCSPNV----FSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 149 NKV--------FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
           N V           +  L   +  ++  +     P+    N+L+D   K G +  A  + 
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 201 KRVKNK-VKPNANTYNIL-----------GMQTL-EEMIQMGHAPDNFTYNTAIDTFCKA 247
           + +  K   P   TYN L            +Q+L ++M++ G  P+ FT+N  +D FCK 
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             + EA  LF  MR+ G     P   +Y  ++  +    +  E   LL  MI SG  PD+
Sbjct: 241 GDMVEAHRLFLEMRSLGCP---PDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 308 STYKEVLEG-----------------------------------MCLAGKVEEAYKFLEE 332
            +Y  +++G                                   +C AGKV  A+   ++
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  PD       +  LC  +   E+  L+  M++  C P +  YN+L+    +   
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKR 417

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            D   E +HE+ +RG + DV+   V+++ L
Sbjct: 418 SDDVCEIFHELTERGFSPDVEISKVILETL 447


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 166/363 (45%), Gaps = 24/363 (6%)

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WAG Q +Y H  L+YN ++++L+ +      +     ML      N       +  +
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSL 62

Query: 161 ILKQYTEKIKV--------KTQPEINALNLLLDALCKCGLVD-YAETICKRVKNKVKPNA 211
              Q  E+ +            P + + ++L+  LC+   VD  AE + + +    +PN 
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 212 NTYNIL-----GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            TY  L      M  L+E       M+  G  PD   YN  ID F K   + EA  LFE 
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M  KG     PT  TY  ++    +        SL   M+  GC+P++ T+  +L+G C 
Sbjct: 183 MLEKGCI---PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
            G + EA++   EM + G PPD+V+YN  ++ +C      EA RL   MI  G  P + +
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN+LI  Y + G  D A + ++E+ K G   D  +Y  +ID L    KV  A  + ++++
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMI 359

Query: 440 NKG 442
             G
Sbjct: 360 ANG 362



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 3/253 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q+ +     +YN  ++   K+         +  M   G     P   TY  ++ +L Q  
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCV---PNTYTYGYLLRSLCQAQ 66

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R EE  S+   M   GC P+V +Y  ++ G+C   KV+EA + L EM + G+ P++VTY 
Sbjct: 67  RFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYG 126

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L  LC      EA+ L+ RM+  GC P    YN+LI  + + G+   A+  + EM ++
Sbjct: 127 SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC   V TY  ++ G     +      L ++++ +G       F++ L     +GD+   
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 467 HKLSDHMRKFYNP 479
           H+L   MR    P
Sbjct: 247 HRLFLEMRSLGCP 259



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 158/390 (40%), Gaps = 64/390 (16%)

Query: 89  QRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN 148
           QRF+ E +  FR     G   N      +Y+++I  L   +   +   L+  M+D   + 
Sbjct: 66  QRFE-EARSVFRGMAAQGCSPNV----FSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 149 NKV--------FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
           N V           +  L   +  ++  +     P+    N+L+D   K G +  A  + 
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 201 KRVKNK-VKPNANTYNIL-----------GMQTL-EEMIQMGHAPDNFTYNTAIDTFCKA 247
           + +  K   P   TYN L            +Q+L ++M++ G  P+ FT+N  +D FCK 
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             + EA  LF  MR+ G     P   +Y  +I  +    +  E   LL  MI SG  PD+
Sbjct: 241 GDMVEAHRLFLEMRSLGCP---PDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 308 STYKEVLEG-----------------------------------MCLAGKVEEAYKFLEE 332
            +Y  +++G                                   +C AGKV  A+   ++
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  PD       +  LC  +   E+  L+  M++  C P +  YN+L+    +   
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKR 417

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            D   E +HE+ +RG + DV+   V+++ L
Sbjct: 418 SDDVCEIFHELTERGFSPDVEISKVILETL 447


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 164/352 (46%), Gaps = 31/352 (8%)

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV-----------DVLL 159
           +  + +AY+ +I+ L       +   L+  M  Y   +   + P+           D L 
Sbjct: 76  FKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALA 135

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL- 217
            + +  T  IK    P+    N +L  LC+   V+ A  +  K VK ++ PN  TYN L 
Sbjct: 136 TVEEMATRGIK----PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLI 191

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                        +  +EM   G+ P   +YNT ID FCK + +  A D+F+ M      
Sbjct: 192 NGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCV 251

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY  +I  L ++ +++    +L  M+  G  P+V+TY  +++G C   +V+EA
Sbjct: 252 ---PNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEA 308

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           +K LE+M  +G  P +VTYN  L  LC     ++A +L+  M +  C P+V TYN L+  
Sbjct: 309 HKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 368

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
                + DGA   + EM  +GC  D  TY  +  GL    KV EA  L+E++
Sbjct: 369 LCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 17/276 (6%)

Query: 181 NLLLDALCKCGLVDYAETIC-----KRVKNKVKPNANTYNIL--------GMQTLEEMIQ 227
            +L+  LCK G  D A  +      KR K K    +   N L          + +E+M +
Sbjct: 49  GILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR 108

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  TY   ++  CK + + +A    E M T+G     P A  Y  ++  L Q ++
Sbjct: 109 YA-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGI---KPDAFIYNFVLSGLCQEEK 164

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   L   M+     P+V TY  ++ G+C A ++E AY+  +EM  KGY P  V+YN 
Sbjct: 165 VEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C  K+   A  ++ +M+   C P+V TY  LI    + G+   A E    M K+G
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 284

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              +V TY  +IDG     +V+EA  LLE++V +G+
Sbjct: 285 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 320



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 176/387 (45%), Gaps = 23/387 (5%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM-LDYMKRNNKVFVPVDVLLMIL---- 162
           +  Y      Y ++I  L       + ++L+ +M L   KR    +  +   L  L    
Sbjct: 38  EAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVE 97

Query: 163 --KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-- 217
             ++  EK+     P+      +++ LCK   +D A  T+ +     +KP+A  YN +  
Sbjct: 98  EARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLS 157

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                          E+M++    P+  TYNT I+  CKA  +  A +LF+ M  KG   
Sbjct: 158 GLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV- 216

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             PT  +Y  +I    +   +     +   M+ S C+P+V TY  +++G+  +GKV+ A 
Sbjct: 217 --PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAA 274

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L+ M  KG  P++ TY+C +   C  +  DEA +L  +M+  G  P+V TYN+L++  
Sbjct: 275 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 334

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
               + + AF+ +  M +R C   V TY  ++  L    +++ A  L  E++ KG     
Sbjct: 335 CRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDA 394

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             +D+    L+  G +    +L + M+
Sbjct: 395 ITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 122/311 (39%), Gaps = 72/311 (23%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P   T+NT  D F KA  + +  ++++ M   G T+    A  Y I+I  L +    +E 
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLR---ASGYGILISCLCKVGNFDEA 64

Query: 292 FSLLGHM---------------INSGCL-------------------PDVSTYKEVLEGM 317
           + LL  M               IN  C                    PD  TY  ++E +
Sbjct: 65  YKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERL 124

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C   ++++A   +EEM  +G  PD   YN  L  LC  +  +EA  L+ +M++    P+V
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRG------------------------------ 407
            TYN LI+   +    + A+E + EM  +G                              
Sbjct: 185 VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDK 244

Query: 408 -----CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
                C  +V TY  +IDGL    KV+ A  +L+ +V KG+      +   +     +  
Sbjct: 245 MVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 304

Query: 463 LGAIHKLSDHM 473
           +   HKL + M
Sbjct: 305 VDEAHKLLEQM 315



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 63/172 (36%), Gaps = 34/172 (19%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +P  +T+  V +G   AG++E+  +  + M   GY      Y   +  LC   N DEA +
Sbjct: 7   IPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYK 66

Query: 364 L---------------YGRMIEVGCW-------------------PSVQTYNMLISMYFE 389
           L               Y  +I   C                    P   TY  ++    +
Sbjct: 67  LLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCK 126

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
               D A  T  EM  RG   D   Y  ++ GL    KVEEA  L E++V +
Sbjct: 127 TKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ 178


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 191/417 (45%), Gaps = 46/417 (11%)

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI----LKQYT 166
           +A  P   +L +D LS+   + +Q  L  S+L    R+   F P    ++     + Q  
Sbjct: 88  HAVGPSTLDLALD-LSARLRRPRQ--LTNSILGLFPRHRLAFTPRTFPILFERLAVSQRR 144

Query: 167 EKIKVK----------TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
             + V+             ++   N LLDAL K      A ++ + ++ +  P+  TYN 
Sbjct: 145 PDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNT 204

Query: 217 LG------------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             +  L  M++ G AP   TYN  +  F +A  +  A D F  M+ +G
Sbjct: 205 LADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRG 264

Query: 265 STISS--PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           S   S  P   +Y  M+  L    ++E+   +   M   GC P V+TY  +++ +C  G 
Sbjct: 265 SKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGN 324

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           VE+A    + M  KGY P++VTY   ++ LC     D  L+L  RM   GC P VQTYN+
Sbjct: 325 VEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNV 384

Query: 383 LISMYFELGEPDGAFETWHEMDK-RGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEV 438
           LI   FE GE +   + + +M K   C  + DTY ++I  +F   + E+   A  ++EE+
Sbjct: 385 LIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEM 444

Query: 439 VNKGLKLPYR-KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRI 494
           V++G  LP R  F+  L  L + G+     KL     K+      RRL   Q+ +R+
Sbjct: 445 VDRGY-LPRRFMFNRVLNGLMLTGNQELSRKLLRMQEKY------RRL---QREIRL 491


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 161/349 (46%), Gaps = 52/349 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P +   N+L+DALCK  +V  A+ + K+ ++    PN  T+N L              + 
Sbjct: 212 PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 271

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M+  G  P+  TY+  ID  CK++   EA ++ E M+T+G T   P A TY+ +I  
Sbjct: 272 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVT---PDAFTYSALIHG 328

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVS--------------------------------- 308
           L + D++EE   +L  M  SGC PDV                                  
Sbjct: 329 LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 388

Query: 309 --TYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPDIVTYNCFLKVLCDNKNGDEALRLY 365
             TY  V++G+C  GK+ EA   LE+M   G   PD+VTY+  +  LC +    EA +L 
Sbjct: 389 VVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 448

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            RM + GC P V TY  +I    + G  + A      M + GCA +V TY  +I GL   
Sbjct: 449 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 508

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
            KV+EA  ++EE+ N G       +++ +  L V G +    +L   M+
Sbjct: 509 RKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 557



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 186/423 (43%), Gaps = 29/423 (6%)

Query: 48  VSDVAKLYEAIID---NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMW 104
           + D+ +   AI++   +   +  +E  L       TT  +VG +     + K+A  FF W
Sbjct: 6   IDDIPRTVTAILNLLHSGRPWSAIEPDLSPFSGASTTPRIVGRVVNSLKDAKLALAFFRW 65

Query: 105 AGHQ-DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKV--FVPV 155
           A      ++H   ++N ++ +L   K   +   L  S L      D    N  +  F   
Sbjct: 66  APASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNA 125

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
             L   L+   E       P+      ++ A+   G +D A    + +     PN  TY 
Sbjct: 126 GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG--CDPNVVTYT 183

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             M+ LEEM + G  P+  TYN  +D  CK  MV  A D+ + M   
Sbjct: 184 ALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG 243

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G    +P   T+  ++    +   +++   LLG M+  G  P+V TY  +++G+C + K 
Sbjct: 244 GF---APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 300

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            EA + LEEM  +G  PD  TY+  +  LC     +EA ++  RM   GC P V  Y+ +
Sbjct: 301 LEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI 360

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I  + + G+   A +T  EM K+  + DV TY  +IDGL    K+ EA  +LE++   G 
Sbjct: 361 IHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGD 420

Query: 444 KLP 446
            LP
Sbjct: 421 VLP 423



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 18/292 (6%)

Query: 163 KQYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           K+  E++K +   P+    + L+  LCK   ++ AE + +R+      P+   Y+ +   
Sbjct: 304 KEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 363

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +TL+EM +   +PD  TYNT ID  CK   + EA  + E M+  G  + 
Sbjct: 364 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVL- 422

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+ +I  L ++D + E   LL  M  +GC PDV TY  +++G+C  G++EEA  
Sbjct: 423 -PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 481

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L+ M   G  P++VTY   +  LC  +  DEA R+   M   GC P++ TYN +++   
Sbjct: 482 LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLC 541

Query: 389 ELGEPDGAFETWHEM-DKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             G    A +    M D R  C+ D  TY  +++ L     V+EA  LLE++
Sbjct: 542 VSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 27/180 (15%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
           D+L+   K      K    P++     ++D LCKCG ++ AE +                
Sbjct: 439 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL---------------- 482

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 L+ M + G AP+  TY T I   CKAR V EA  + E MR  G     P   TY
Sbjct: 483 ------LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG---CPPNLVTY 533

Query: 276 AIMIVALVQNDRMEECFSLLGHMIN--SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
             M+  L  + R++E   L+  M +  + C PD +TY+ ++  +  +  V+EA + LE+M
Sbjct: 534 NTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 15/107 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM---------QTL 222
           P +     L+  LCK   VD AE + + ++N    PN  TYN +  G+         Q L
Sbjct: 493 PNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQL 552

Query: 223 EEMIQMGHA---PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
            + ++ G A   PD  TY T ++    + +V EA  L E M++  S+
Sbjct: 553 VQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSS 599


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 154/316 (48%), Gaps = 27/316 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------------GMQT 221
           P++   N L++ LCK G VD A  +   V     PN  TY+ L               Q 
Sbjct: 188 PDVVTYNSLVNGLCKNGRVDEARMLI--VDKGFSPNVITYSTLISGLCRELRRLESARQL 245

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE+M+  G  PD  +YN  I    + + V+EA  LF  +  +G     P   TY I+I  
Sbjct: 246 LEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGY---EPEVPTYNILIDG 302

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L++ DR+ E F L   ++  G  PD  TY   ++G+C AG+VE+A   L++M  KG  PD
Sbjct: 303 LLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 362

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V++N  +  LC  K  DEA  L   M   GC P+  ++N LI      G+   A  T+ 
Sbjct: 363 VVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFK 422

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           EM KRG    V TY +++DGL       +++EA  L + ++ KG ++P       +   +
Sbjct: 423 EMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKG-RVP-----DVVTYSA 476

Query: 459 VIGDLGAIHKLSDHMR 474
           +I  LG   KL D  R
Sbjct: 477 LIDGLGKAGKLDDARR 492



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 155/325 (47%), Gaps = 49/325 (15%)

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM- 219
           ++ E++ VK   +I+  N+ +  LC+   +  A+T+   + K+   PN  TYN L  G+ 
Sbjct: 37  RFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLC 96

Query: 220 --------QTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   Q L E MI+ G++PD  TYNT +  FCK   + EA  +F+    +G     P
Sbjct: 97  NGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFV---P 153

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE----- 325
              TY  +I    + D+++E   +L  M++   +PDV TY  ++ G+C  G+V+E     
Sbjct: 154 DVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLI 213

Query: 326 ----------------------------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
                                       A + LE+M   G  PDIV+YN  +  L   + 
Sbjct: 214 VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQG 273

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             EAL+L+G ++  G  P V TYN+LI    +    + AFE +  + K G   D  TY V
Sbjct: 274 VSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 333

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKG 442
            IDGL    +VE+A  +L+++  KG
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKG 358



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 158/329 (48%), Gaps = 25/329 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           LK +   ++   +PE+   N+L+D L K   V+ A E     VK+ ++P+A TY +    
Sbjct: 278 LKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 337

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +  L++M + G  PD  ++N  I+  CK + V EA  L   M  KG    
Sbjct: 338 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGC--- 394

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA---GKVEE 325
           SP A ++  +I    +  + ++  +    M+  G  P V TY  +++G+C A   G+++E
Sbjct: 395 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 454

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A    + M  KG  PD+VTY+  +  L      D+A RL G M   GC P+V TYN LIS
Sbjct: 455 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 514

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
               L + D A E +  M ++GC  D  TY  +I  L     V++A  L +  +  G+ +
Sbjct: 515 GLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGV-V 573

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           P        M  S+I  L A+ ++ + ++
Sbjct: 574 PTSG-----MYFSLIDGLCAVARVDEALK 597



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 1/177 (0%)

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           I SP A T  I++ +L+++ ++E+    +  ++  G L D+ST+   + G+C A ++ +A
Sbjct: 11  IYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKG-LCDISTFNIYISGLCRASRIGDA 69

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
               + M   G+ P+ +TYN  L  LC+     +A  LY RMI+ G  P V TYN L+  
Sbjct: 70  QTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHG 129

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + ++G+ D A + +    KRG   DV TY  +I+G     K++EA  +L+ +V++ L
Sbjct: 130 FCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESL 186



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 7/225 (3%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M T+ + +   ++PD +T    + +  K+  + +A    E +  KG    S    T+ I 
Sbjct: 1   MHTVYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDIS----TFNIY 56

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  R+ +  ++   M   G  P+  TY  +L G+C  G++ +A    E M   GY
Sbjct: 57  ISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGY 116

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+VTYN  L   C     DEAL+++   ++ G  P V TYN LI+ + +  + D A  
Sbjct: 117 SPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQR 176

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               M       DV TY  +++GL    +V+EA  L   +V+KG 
Sbjct: 177 ILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGF 218


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 155/313 (49%), Gaps = 20/313 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P     N+L+D  CK   V  A  +   + +  VKPN  TYN L                
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M+     P+  T+N  ++ FCK +MV +A +LF+ M  +G T   P   TY I+I A
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGIT---PNVTTYNILIDA 350

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +++ ME+ F+L   M+  G  PDVSTY  ++ G+C  G +E A   + EM  K    D
Sbjct: 351 YCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKAD 410

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  LC+     +ALRL   M   G  PS  TYN +I  Y + G    A     
Sbjct: 411 LITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRS 470

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLMQLS 458
           +M+K G   +V TY V+I G     K+E+A  LL E++ KGL   ++ Y      +M+  
Sbjct: 471 QMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530

Query: 459 VIGDL-GAIHKLS 470
            + D+ G ++K++
Sbjct: 531 FVPDIEGHLYKVA 543



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 19/327 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E I+ + +P + + N++++ LCK G ++ A  I + +K + V  N  TYN L      
Sbjct: 151 YKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCK 210

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L+EM   G  P+  T+N  ID FCK + V+ A  +F  M  +G    
Sbjct: 211 MGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGV--- 267

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  L  N ++ E  +L   M+NS   P++ T+  +L G C    V++A +
Sbjct: 268 KPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGE 327

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M  +G  P++ TYN  +   C ++N ++A  LY  M+  G  P V TYN LI+   
Sbjct: 328 LFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLC 387

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G+ + A     EMD +    D+ TY ++ID L +  ++++A  LL+E+  KGLK    
Sbjct: 388 RKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQL 447

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +++ +      G+L A   L   M K
Sbjct: 448 TYNTMIDGYCKEGNLRAALNLRSQMEK 474



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 38/206 (18%)

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           I++ A  +N R    F       + G    V++   ++ G+   G++ +     +EM  +
Sbjct: 98  ILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRR 157

Query: 337 GYPPDIVTYNCFLKVLCD----NKNGD--EALRLYGRMIEV------------------- 371
              P ++++N  +  LC     NK GD  E +++ G    V                   
Sbjct: 158 RIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKM 217

Query: 372 -------------GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
                        G  P+  T+N+LI  + +      A + + EM+++G   +V TY  +
Sbjct: 218 YKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL 277

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLK 444
           I+GL +  KV EA  L +++VN  LK
Sbjct: 278 INGLCNNGKVNEATALRDQMVNSCLK 303


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 194/423 (45%), Gaps = 37/423 (8%)

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
           + N   ++EK L      ++   V+ VL+R      +A  FF WA  Q  + +   +YN 
Sbjct: 93  SKNPNSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQKGFMYNTESYNA 152

Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT------- 173
           +ID L     K KQF ++ ++++ MKR  K  +  +   +I ++Y    KVK        
Sbjct: 153 LIDSLG----KIKQFNMIWNLVNDMKR--KGVLTKETFALISRRYARSGKVKEAMNTFEK 206

Query: 174 ------QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL----GMQ-- 220
                 + E    N LLD L K   V  A+ +  ++K  +  P+  +Y IL    G +  
Sbjct: 207 MEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKN 266

Query: 221 ------TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                    EM   G  PD  TY   I+ +CK R   +A +LF  M +K      P+   
Sbjct: 267 LLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNC---QPSPHI 323

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           +  +I  L    R+ E          SG  P+  TY  V+   C + ++++AY+ ++EM 
Sbjct: 324 FCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMR 383

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEP 393
             G  P+  TY+  L  L   +   EA  ++ +M  E  C P+V TY++++ M+  + + 
Sbjct: 384 KSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKV 443

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A + W  M  +G    +  + ++I+ L   +K++ AC   +E+++ G++ P   F S+
Sbjct: 444 ESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALF-SH 502

Query: 454 LMQ 456
           L Q
Sbjct: 503 LKQ 505



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 17/262 (6%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY-- 214
           LL + + Y E      +P++    +L++A CK    D A  + + +++K  +P+ + +  
Sbjct: 267 LLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCT 326

Query: 215 --NILG-MQTLEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
             N LG ++ L E ++        G AP+  TYN  +  +C +  + +A  + + MR  G
Sbjct: 327 LINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSG 386

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKV 323
                P ++TY I++  L++ ++  E FS+   M +   C P VSTY  ++   C   KV
Sbjct: 387 V---GPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKV 443

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E A K  + M  KG  P +  ++  +  LC     D A + +  M++VG  P    ++ L
Sbjct: 444 ESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHL 503

Query: 384 ISMYFELGEPDGAFETWHEMDK 405
                E G  D       ++DK
Sbjct: 504 KQALIEDGRKDTVVLLAQKIDK 525


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 204/427 (47%), Gaps = 40/427 (9%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAG-HQDNYAHEPLAYNLMIDIL 125
            + +AL    +  T D V  V++R       A +FF     H  +Y H P +++  +DI 
Sbjct: 55  TVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIA 114

Query: 126 SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIK----VKT-------- 173
           +  +     + LV  M     R+ ++      L ++ ++Y    K    V+T        
Sbjct: 115 ARMRDFNSAWALVGRM-----RSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHG 169

Query: 174 -QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG------------MQ 220
            + ++++ N LLD LCK   V+ A ++ K + ++ +P+  TYNIL             ++
Sbjct: 170 IRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALR 229

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM+Q G  P   TYNT +  + ++  + EA + +  M+ +   I      TY  +I 
Sbjct: 230 VLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEID---VVTYTTVIH 286

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-P 339
                  +++   +   M+  G +P+V+TY  +++ +C    VE A    EEM  +G   
Sbjct: 287 GFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCV 346

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P++VTYN  ++ LC   + + AL    RM E G    VQTYN++I  + + GE + A E 
Sbjct: 347 PNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEV 406

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKLPYR-KFDSYLM 455
           + +M    C  ++DTY V+I  +F   K E+   A  LL ++V++G  LP +  F+  L 
Sbjct: 407 FGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGF-LPRKFTFNRVLN 465

Query: 456 QLSVIGD 462
            L + G+
Sbjct: 466 GLVITGN 472



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 23/223 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           Y E  K K + ++     ++      G V  A+ +    VK  V PN  TYN L      
Sbjct: 266 YLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCK 325

Query: 218 ------GMQTLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                  +   EEM + G   P+  TYN  I   C    V +      FM   G      
Sbjct: 326 KDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCH---VGDMERALGFMERMGEHGLRA 382

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE---AY 327
             +TY ++I        +E+   + G M +  CLP++ TY  ++  M +  K E+   A 
Sbjct: 383 CVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAG 442

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD---EALRLYGR 367
           K L +M ++G+ P   T+N  L  L    N D   E LR+  R
Sbjct: 443 KLLMDMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSR 485



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 4/225 (1%)

Query: 252 EAADLFEFM-RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
           +A   F+ + R   S   SP++  +A+ I A +++      ++L+G M +    P   T 
Sbjct: 85  KALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRD--FNSAWALVGRMRSLRLGPSPKTL 142

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             + E     GK   A +    M   G   D+ ++N  L +LC +K  + A  L  + + 
Sbjct: 143 AILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLL-KTLT 201

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
               P   TYN+L + Y  +     A     EM +RG    + TY  M+ G F  ++++E
Sbjct: 202 SRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKE 261

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           A     E+  +  ++    + + +    V GD+    ++   M K
Sbjct: 262 AWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVK 306


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 208/461 (45%), Gaps = 56/461 (12%)

Query: 2   TLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDN 61
           TL HL    +   + +V++ +  S +  I ++P  + + F  ++ SV  + + +  I+  
Sbjct: 14  TLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLP--MNQKFPRNNPSVRTLDERFIRILKI 71

Query: 62  SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121
                + EKAL+ L + +    V  VL +   E  +  +FF WAG + N+ H+   Y  +
Sbjct: 72  FKWGPDAEKALEVLKLKVDHRLVREVL-KIDVEIHVKIQFFKWAGKRRNFEHDSTTYMAL 130

Query: 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALN 181
           I  L       + ++ +  M+    R+  V  P D+        +E +KV          
Sbjct: 131 IHCLDEAGMLGEMWKTIQEMV----RSTCVIGPADL--------SEIVKV---------- 168

Query: 182 LLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEEMIQMGHA--------- 231
                L K  +V+ A +I  ++K  K KP +NTYN + +  ++E    GH          
Sbjct: 169 -----LGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQE----GHHEKVHELYNE 219

Query: 232 --------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
                   PD  TY+  I  F K      A  LF+ M+  G     PTAK Y  ++    
Sbjct: 220 MCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGL---HPTAKIYTTILGIYF 276

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R+E+   L+  M   GC   V TY E+++G+  AGKVEEAY     M  +G  PD+V
Sbjct: 277 KLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVV 336

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-GEPDGAFETWHE 402
             N  + +L       +A++L+  M  + C P+V TYN +I   FE       AF  + +
Sbjct: 337 LINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEK 396

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M + G      TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF 437



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 17/300 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K   +P++  +N L++ L K G +  A  + + +++ +  PN  TYN +          
Sbjct: 327 LKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKAR 386

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                   E+M + G  P +FTY+  ID FCK   V +A  L E M  KG    +P    
Sbjct: 387 ASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF---APCPAA 443

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I AL +  R E    L   +  +        Y  +++ +   G++ EA     EM 
Sbjct: 444 YCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMK 503

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  PD+  YN  +  +      DEA  L   M E GC P + ++N++++ +   G P 
Sbjct: 504 KLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPK 563

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           GA E +  M       DV +Y  ++  L      EEA  L++E+ +KG +     + S L
Sbjct: 564 GAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSIL 623



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 15/234 (6%)

Query: 201 KRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
           K  +N V P++ TY+IL             +  LEEM + G AP    Y + I+   KA+
Sbjct: 396 KMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAK 455

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
               A +LF+ +R         +A+ YA+MI  L +  R+ E   L   M   GC PDV 
Sbjct: 456 RYEAANELFQELR---ENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVY 512

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            Y  ++ GM   G  +EA+  L  M   G  PD+ ++N  L           A+ ++ RM
Sbjct: 513 AYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
                 P V +YN ++      G  + A +   EM+ +G   D+ TY  +++ +
Sbjct: 573 KNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAV 626



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 21/307 (6%)

Query: 183 LLDALCKCGLVDYAETI-CKRVKNKVKPNA----NTYNILG--------MQTLEEMIQMG 229
           L+  + K G V+ A +I    +K   KP+     N  N+LG        ++  EEM  + 
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 230 HAPDNFTYNTAIDTF--CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             P+  TYNT I      KAR  +EA   +E M+  G     P++ TY+I+I    + +R
Sbjct: 366 CTPNVVTYNTVIKALFESKAR-ASEAFLWYEKMKENGVV---PSSFTYSILIDGFCKTNR 421

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG-NKGYPPDIVTYN 346
           +E+   LL  M   G  P  + Y  ++  +  A + E A +  +E+  N GY    V Y 
Sbjct: 422 VEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARV-YA 480

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +K L       EA+ L+  M ++GC P V  YN L+S    +G  D A      M++ 
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  D++++ ++++G       + A  +   + N  +K     +++ L  LS  G     
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600

Query: 467 HKLSDHM 473
            KL   M
Sbjct: 601 AKLMKEM 607



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 48/284 (16%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +T++EM++          +  +    KA+MV +A  +F   + KG     PT+ TY  MI
Sbjct: 145 KTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIF--YQIKGRK-CKPTSNTYNSMI 201

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
           + L+Q    E+   L   M N              EG CL                    
Sbjct: 202 LMLMQEGHHEKVHELYNEMCN--------------EGDCL-------------------- 227

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD VTY+  +         D A+ L+  M E G  P+ + Y  ++ +YF+LG  + A   
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             EM ++GCA  V TY  +I G+    KVEEA  +   ++ +G K      ++ +  L  
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGK 347

Query: 460 IGDLGAIHKLSDHMRKF--------YNPVIARRLALNQKRVRIS 495
            G L    KL + M           YN VI    AL + + R S
Sbjct: 348 AGRLADAIKLFEEMESLQCTPNVVTYNTVIK---ALFESKARAS 388


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 204/440 (46%), Gaps = 38/440 (8%)

Query: 52  AKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNY 111
           A    A+I NS     + ++L S  +  T   V  +L+R       A  FF    H  +Y
Sbjct: 29  ATTLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSY 88

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171
            H+  +++  IDI +    + + FR +  ++  M R+ ++        +I ++Y    K 
Sbjct: 89  CHQASSFDHAIDICA----RLRDFRTLWFLVSRM-RSCRLGPSPRTFAIIAERYAAMGKP 143

Query: 172 KTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL- 217
                            ++++ N +LD LCK   V+ A  + K +K K K +  +YNI+ 
Sbjct: 144 HRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIV 203

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++ L+EM++ G  P+  TYN  ++ + +A    EA   F  M+ +   
Sbjct: 204 NGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCD 263

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           I      TY  +I  L     ++   ++   M+  G LP V+T+  +++ +C    VE A
Sbjct: 264 ID---VVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENA 320

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
               EEM  +GY P+ +TYN  ++ LC       A+ L  RM +  C P+VQTYN+LI  
Sbjct: 321 ILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRY 380

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF---DCSKVEEACFLLEEVVNKGL 443
           + + GE +   + + +M    C  ++DTY ++I+ +F   +   +  A  LL E+V++G 
Sbjct: 381 FCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGF 440

Query: 444 KLPYR-KFDSYLMQLSVIGD 462
            LP +  F+  L  L + G+
Sbjct: 441 -LPRKLTFNRVLDGLLLTGN 459



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 21/182 (11%)

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           VK+ V P+  T+N L             +   EEM++ G+ P++ TYN  I   C    +
Sbjct: 293 VKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEM 352

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
             A +L E M         P  +TY I+I        +E+   L   M N  CLP++ TY
Sbjct: 353 QRAMELMERMEDDDC---EPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTY 409

Query: 311 KEVLEGMCLAGKVEE---AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD---EALRL 364
             ++  M +    +    A K L EM ++G+ P  +T+N  L  L    N D   E L L
Sbjct: 410 NILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSL 469

Query: 365 YG 366
            G
Sbjct: 470 QG 471



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 3/224 (1%)

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A   F+ +    S     ++  +AI I A +++ R    + L+  M +    P   T+ 
Sbjct: 74  KALHFFKILSHHPSYCHQASSFDHAIDICARLRDFR--TLWFLVSRMRSCRLGPSPRTFA 131

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            + E     GK   A      M   G   D+ ++N  L VLC +K  + A  L+ + ++ 
Sbjct: 132 IIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLF-KALKG 190

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                  +YN++++ +  +     A E   EM +RG   ++ TY +M++G F   +  EA
Sbjct: 191 KFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEA 250

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
                E+  +   +    + S +  L V+G++     + + M K
Sbjct: 251 WGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVK 294


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 208/461 (45%), Gaps = 56/461 (12%)

Query: 2   TLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDN 61
           TL HL    +   + +V++ +  S +  I ++P  + + F  ++ SV  + + +  I+  
Sbjct: 14  TLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLP--MNQKFPRNNPSVRTLDERFIRILKI 71

Query: 62  SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121
                + EKAL+ L + +    V  VL +   E  +  +FF WAG + N+ H+   Y  +
Sbjct: 72  FKWGPDAEKALEVLKLKVDHRLVREVL-KIDVEIHVKIQFFKWAGKRRNFEHDSTTYMAL 130

Query: 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALN 181
           I  L       + ++ +  M+    R+  V  P D+        +E +KV          
Sbjct: 131 IHCLDEAGMLGEMWKTIQEMV----RSTCVIGPADL--------SEIVKV---------- 168

Query: 182 LLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEEMIQMGHA--------- 231
                L K  +V+ A +I  ++K  K KP +NTYN + +  ++E    GH          
Sbjct: 169 -----LGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQE----GHHEKVHELYNE 219

Query: 232 --------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
                   PD  TY+  I  F K      A  LF+ M+  G     PTAK Y  ++    
Sbjct: 220 MCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGL---HPTAKIYTTILGIYF 276

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R+E+   L+  M   GC   V TY E+++G+  AGKVEEAY     M  +G  PD+V
Sbjct: 277 KLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVV 336

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-GEPDGAFETWHE 402
             N  + +L       +A++L+  M  + C P+V TYN +I   FE       AF  + +
Sbjct: 337 LINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEK 396

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M + G      TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF 437



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 135/308 (43%), Gaps = 17/308 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K   +P++  +N L++ L K G +  A  + + +++ +  PN  TYN +          
Sbjct: 327 LKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKAR 386

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                   E+M + G  P +FTY+  ID FCK   V +A  L E M  KG    +P    
Sbjct: 387 ASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF---APCPAA 443

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I AL +  R E    L   +  +        Y  +++ +   G++ EA     EM 
Sbjct: 444 YCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMK 503

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  PD+  YN  +  +      DEA  L   M E GC P + ++N++++ +   G P 
Sbjct: 504 KLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPK 563

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           GA E +  M       DV +Y  ++  L      EEA  L++E+ +KG +     + S L
Sbjct: 564 GAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSIL 623

Query: 455 MQLSVIGD 462
             +  I +
Sbjct: 624 EAVGKIDE 631



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 21/307 (6%)

Query: 183 LLDALCKCGLVDYAETI-CKRVKNKVKPNA----NTYNILG--------MQTLEEMIQMG 229
           L+  + K G V+ A +I    +K   KP+     N  N+LG        ++  EEM  + 
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 230 HAPDNFTYNTAIDTF--CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             P+  TYNT I      KAR  +EA   +E M+  G     P++ TY+I+I    + +R
Sbjct: 366 CTPNVVTYNTVIKALFESKAR-ASEAFLWYEKMKENGVV---PSSFTYSILIDGFCKTNR 421

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG-NKGYPPDIVTYN 346
           +E+   LL  M   G  P  + Y  ++  +  A + E A +  +E+  N GY    V Y 
Sbjct: 422 VEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARV-YA 480

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +K L       EA+ L+  M ++GC P V  YN L+S    +G  D A      M++ 
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  D++++ ++++G       + A  +   + N  +K     +++ L  LS  G     
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600

Query: 467 HKLSDHM 473
            KL   M
Sbjct: 601 AKLMKEM 607



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 48/284 (16%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +T++EM++          +  +    KA+MV +A  +F   + KG     PT+ TY  MI
Sbjct: 145 KTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIF--YQIKGRK-CKPTSNTYNSMI 201

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
           + L+Q    E+   L   M N              EG CL                    
Sbjct: 202 LMLMQEGHHEKVHELYNEMCN--------------EGDCL-------------------- 227

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD VTY+  +         D A+ L+  M E G  P+ + Y  ++ +YF+LG  + A   
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             EM ++GCA  V TY  +I G+    KVEEA  +   ++ +G K      ++ +  L  
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGK 347

Query: 460 IGDLGAIHKLSDHMRKF--------YNPVIARRLALNQKRVRIS 495
            G L    KL + M           YN VI    AL + + R S
Sbjct: 348 AGRLADAIKLFEEMESLQCTPNVVTYNTVIK---ALFESKARAS 388


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 153/312 (49%), Gaps = 17/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N+++   CK G ++ A ++  R+   V P+  TYN +             M+ L
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS--VSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M+Q    PD  TY   I+  C+   V +A  L + MR +G T   P   TY +++  +
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCT---PDVVTYNVLVNGI 284

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R++E    L  M +SGC P+V T+  +L  MC  G+  +A K L +M  KG+ P +
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VT+N  +  LC       A+ +  +M + GC P+  +YN L+  + +  + D A E    
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M  RGC  D+ TY  M+  L    KVE+A  +L ++ +KG       +++ +  L+  G 
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464

Query: 463 LGAIHKLSDHMR 474
            G   KL D MR
Sbjct: 465 TGKAIKLLDEMR 476



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 140/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   N++L ++C  G  +D  + +   ++    P+  T+NIL             + 
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAID 365

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M + G  P++ +YN  +  FCK + +  A +  E M ++G     P   TY  M+ 
Sbjct: 366 ILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY---PDIVTYNTMLT 422

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ ++E+   +L  + + GC P + TY  V++G+  AGK  +A K L+EM  K   P
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D +TY+  +  L      DEA++ +     +G  P+  T+N ++    +  + D A +  
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFL 542

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M  RGC     +Y ++I+GL      +EA  LL E+ NKGL
Sbjct: 543 VYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 163/364 (44%), Gaps = 29/364 (7%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-----LKQYTEKIK 170
           + YN+MI    S   KA +     S+LD M  +  V     +L  +     LKQ  E + 
Sbjct: 173 ITYNVMI----SGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 171 VKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
              Q    P++    +L++A C+   V  A  +   ++++   P+  TYN+L        
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L +M   G  P+  T+N  + + C      +A  L   M  KG    SP+  
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF---SPSVV 345

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I+I  L +   +     +L  M   GC P+  +Y  +L G C   K++ A ++LE M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G  PDIVTYN  L  LC +   ++A+ +  ++   GC P + TYN +I    + G+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A +   EM  +    D  TY  ++ GL    KV+EA     E    G++     F+S 
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSI 525

Query: 454 LMQL 457
           ++ L
Sbjct: 526 MLGL 529



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 135/283 (47%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P++   N+L++ +CK G +D A      +  +  +PN  T+NI+              + 
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M++ G +P   T+N  I+  C+  ++  A D+ E M   G     P + +Y  ++  
Sbjct: 332 LADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGC---QPNSLSYNPLLHG 388

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +M+     L  M++ GC PD+ TY  +L  +C  GKVE+A + L ++ +KG  P 
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  L       +A++L   M      P   TY+ L+      G+ D A + +H
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           E ++ G   +  T+  ++ GL    + + A   L  ++N+G K
Sbjct: 509 EFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCK 551



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 14/272 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G + LE M+  G+ PD     T I  FC+     +AA + E +   G+    P   TY +
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAV---PDVITYNV 177

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           MI    +   +    S+L  M  S   PDV TY  +L  +C +GK+++A + L+ M  + 
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD++TY   ++  C +    +A++L   M + GC P V TYN+L++   + G  D A 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +  ++M   GC  +V T+ +++  +    +  +A  LL +++ KG       F+  +  L
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354

Query: 458 SVIGDLGAIHKLSDHMRKF--------YNPVI 481
              G LG    + + M K         YNP++
Sbjct: 355 CRKGLLGRAIDILEKMPKHGCQPNSLSYNPLL 386



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 33/233 (14%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+   +EE F  L +M+  G +PD+     ++ G C  GK  +A K LE +   G  PD
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171

Query: 342 --------------------------------IVTYNCFLKVLCDNKNGDEALRLYGRMI 369
                                           +VTYN  L+ LCD+    +A+ +  RM+
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           +  C+P V TY +LI           A +   EM  RGC  DV TY V+++G+    +++
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHMRKFYNPVI 481
           EA   L ++ + G +      +  L  +   G  + A   L+D +RK ++P +
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 10/174 (5%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           L DV +    L  +   G++EE +KFLE M   G  PDI+     ++  C      +A +
Sbjct: 100 LEDVESNNH-LRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAK 158

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +   +   G  P V TYN++IS Y + GE + A      +D+   + DV TY  ++  L 
Sbjct: 159 ILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLC 215

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI---GDLGAIHKLSDHMR 474
           D  K+++A  +L+ ++ +     Y    +Y + +        +G   KL D MR
Sbjct: 216 DSGKLKQAMEVLDRMLQRDC---YPDVITYTILIEATCRDSGVGQAMKLLDEMR 266



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 23/176 (13%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +ML  + ++ KV   V+    IL Q + K      P +   N ++D L K G    A  +
Sbjct: 419 TMLTALCKDGKVEDAVE----ILNQLSSK---GCSPVLITYNTVIDGLAKAGKTGKAIKL 471

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K +KP+  TY+ L             ++   E  +MG  P+  T+N+ +   CK
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCK 531

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            R    A D   +M  +G     PT  +Y I+I  L      +E   LL  + N G
Sbjct: 532 TRQTDRAIDFLVYMINRGC---KPTETSYTILIEGLAYEGMAKEALELLNELCNKG 584


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 155/298 (52%), Gaps = 16/298 (5%)

Query: 179 ALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            +N+L++  CK G +D A + I + V    +P+  TYN L             M+ ++ M
Sbjct: 275 TVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAM 334

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G  PD +TYN+ I   CK   + EA  + + M ++     SP A TY  +I +L + 
Sbjct: 335 LLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDC---SPNAVTYNAIISSLCKE 391

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +R++E   +   + + G LPDV T+  +++G+CL+   + A    EEM  KG  PD  TY
Sbjct: 392 NRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTY 451

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC ++  +EAL L   M   GC  +V  YN LI  + +    + A E + EM+ 
Sbjct: 452 NMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMEL 511

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +G ++D  TY  +IDGL    +VE+A  L+++++ +GL+     ++S L      GD+
Sbjct: 512 QGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDI 569



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 142/296 (47%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTLEE--------- 224
           P+I   N L+  LCK G ++ A  I  + V     PNA TYN +     +E         
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              +   G  PD  T+N+ I   C +     A DLFE M+ KG     P   TY ++I +
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGC---RPDEFTYNMLIDS 457

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  + ++EE  +LL  M  +GC  +V  Y  +++G C   ++EEA +  +EM  +G   D
Sbjct: 458 LCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRD 517

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +  LC +K  ++A +L  +MI  G  P   TYN L++ + + G+   A +   
Sbjct: 518 SVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQ 577

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   GC  D+ TY  +I GL    +V+ A  LL  +  KG+ L    ++  +  L
Sbjct: 578 TMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQAL 633



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 154/361 (42%), Gaps = 24/361 (6%)

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNNKVFVPVDVLLM 160
           F+     + +  +   YN +++ L    +      +V +ML   +  +   +  +   L 
Sbjct: 295 FIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLC 354

Query: 161 ILKQYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNAN 212
            L +  E +K+  Q       P     N ++ +LCK   VD A  I + + +K + P+  
Sbjct: 355 KLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVC 414

Query: 213 TYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           T+N L             M   EEM   G  PD FTYN  ID+ C +R + EA +L + M
Sbjct: 415 TFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEM 474

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
              G    +     Y  +I    +N R+EE   +   M   G   D  TY  +++G+C +
Sbjct: 475 ELNGC---ARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKS 531

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
            +VE+A + +++M  +G  PD  TYN  L   C   +  +A  +   M   GC P + TY
Sbjct: 532 KRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTY 591

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             LIS   + G    A      +  +G       Y  +I  LF  ++  EA  L  E+++
Sbjct: 592 ATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLD 651

Query: 441 K 441
           K
Sbjct: 652 K 652



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 176/396 (44%), Gaps = 42/396 (10%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
            T   ++  L+R Q +E  A R F WA  Q N+      Y  ++  L     KA  F  +
Sbjct: 62  FTPKQLIETLRR-QTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLG----KAGSFEYM 116

Query: 139 CSMLDYMKRNN--------KVFVPV-------DVLLMILKQYTEKIKVKTQPEINALNLL 183
             +L+ MK +          +FV         D ++ I+K   ++ ++K  P+    N+L
Sbjct: 117 RRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIK--PDTRFYNVL 174

Query: 184 LDALC---KCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           L+ L    K  LV+ A +    V+ +++ + +T+NIL             +  +EEM   
Sbjct: 175 LNVLVDANKLKLVESAHS--SMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSY 232

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G +PD  T+ T +  + +   +  A  + E M   G      T  T  ++I    +  R+
Sbjct: 233 GLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPC---TDVTVNVLINGFCKQGRI 289

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++  S +   ++ G  PD  TY  ++ G+C  G  + A + ++ M   G  PDI TYN  
Sbjct: 290 DQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSL 349

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC     +EA+++  +M+   C P+  TYN +IS   +    D A E    +  +G 
Sbjct: 350 ISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGI 409

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             DV T+  +I GL   S  + A  L EE+  KG +
Sbjct: 410 LPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCR 445



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 134/295 (45%), Gaps = 20/295 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L+  LC       A  + + +K K  +P+  TYN+L             +  
Sbjct: 411 PDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNL 470

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G A +   YNT ID FCK + + EA ++F+ M  +G +  S    TY  +I  
Sbjct: 471 LKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDS---VTYNTLIDG 527

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+E+   L+  MI  G  PD  TY  +L   C  G +++A   ++ M + G  PD
Sbjct: 528 LCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPD 587

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTY   +  LC       A RL   +   G   +   YN +I   F+      A   + 
Sbjct: 588 IVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFR 647

Query: 402 EMDKRGCAQDVDTYCVMIDGLFD-CSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           EM  +    D  TY ++  GL +    + EA     E++ +G  +P  +F S++M
Sbjct: 648 EMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERG-NIP--EFSSFVM 699



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 111/295 (37%), Gaps = 62/295 (21%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSM-LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
             YN++ID L S++   +   L+  M L+   RN  ++  +       K+  E  ++  +
Sbjct: 449 FTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDE 508

Query: 175 PEINAL-------NLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL--------- 217
            E+  +       N L+D LCK   V D A+ + + +   ++P+  TYN L         
Sbjct: 509 MELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGD 568

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  ++ M   G  PD  TY T I   CKA  V  A+ L   ++ KG  +   T   
Sbjct: 569 IKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVL---TPHA 625

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV--------------------- 313
           Y  +I AL + +R  E   L   M++    PD  TYK V                     
Sbjct: 626 YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEM 685

Query: 314 ---------------LEGMCLAGKVEEAYKFLEEMGNKG--YPPDIVTYNCFLKV 351
                           EG+C     +   K ++ +  K      +I T   FLK+
Sbjct: 686 IERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREISTIRGFLKI 740



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 1/177 (0%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +P  S Y+E+L  +  AG  E   + LEEM   G   D   +  F++     +  DE + 
Sbjct: 94  VPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVG 153

Query: 364 LYGRM-IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +   M  E    P  + YN+L+++  +  +          M +R    DV T+ ++I  L
Sbjct: 154 IVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKAL 213

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
               +V  A  ++EE+ + GL      F + +      G+L    ++ + M ++  P
Sbjct: 214 CKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCP 270


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N+++   CK G ++ A ++  R+   V P+  TYN +             M+ L
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS--VSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M+Q    PD  TY   I+  C+   V  A  L + MR +G T   P   TY +++  +
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT---PDVVTYNVLVNGI 284

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R++E    L  M +SGC P+V T+  +L  MC  G+  +A K L +M  KG+ P +
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VT+N  +  LC       A+ +  +M + GC P+  +YN L+  + +  + D A E    
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M  RGC  D+ TY  M+  L    KVE+A  +L ++ +KG       +++ +  L+  G 
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464

Query: 463 LGAIHKLSDHMR 474
            G   KL D MR
Sbjct: 465 TGKAIKLLDEMR 476



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   N++L ++C  G  +D  + +   ++    P+  T+NIL             + 
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAID 365

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M Q G  P++ +YN  +  FCK + +  A +  E M ++G     P   TY  M+ 
Sbjct: 366 ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY---PDIVTYNTMLT 422

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ ++E+   +L  + + GC P + TY  V++G+  AGK  +A K L+EM  K   P
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D +TY+  +  L      DEA++ +     +G  P+  T+N ++    +  + D A +  
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFL 542

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M  RGC  +  +Y ++I+GL      +EA  LL E+ NKGL
Sbjct: 543 VFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 164/364 (45%), Gaps = 29/364 (7%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-----LKQYTEKIK 170
           + YN+MI    S   KA +     S+LD M  +  V     +L  +     LKQ  E + 
Sbjct: 173 ITYNVMI----SGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 171 VKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
              Q    P++    +L++A C+   V +A  +   ++++   P+  TYN+L        
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L +M   G  P+  T+N  + + C      +A  L   M  KG    SP+  
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF---SPSVV 345

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I+I  L +   +     +L  M   GC P+  +Y  +L G C   K++ A ++LE M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G  PDIVTYN  L  LC +   ++A+ +  ++   GC P + TYN +I    + G+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A +   EM  +    D  TY  ++ GL    KV+EA     E    G++     F+S 
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525

Query: 454 LMQL 457
           ++ L
Sbjct: 526 MLGL 529



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 14/272 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G + LE M+  G+ PD     T I  FC+     +AA + E +   G+    P   TY +
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAV---PDVITYNV 177

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           MI    +   +    S+L  M  S   PDV TY  +L  +C +GK+++A + L+ M  + 
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD++TY   ++  C +     A++L   M + GC P V TYN+L++   + G  D A 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +  ++M   GC  +V T+ +++  +    +  +A  LL +++ KG       F+  +  L
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354

Query: 458 SVIGDLGAIHKLSDHMRKF--------YNPVI 481
              G LG    + + M +         YNP++
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLL 386



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 33/233 (14%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           +V+   +EE F  L +M+  G +PD+     ++ G C  GK  +A K LE +   G  PD
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 342 --------------------------------IVTYNCFLKVLCDNKNGDEALRLYGRMI 369
                                           +VTYN  L+ LCD+    +A+ +  RM+
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           +  C+P V TY +LI           A +   EM  RGC  DV TY V+++G+    +++
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHMRKFYNPVI 481
           EA   L ++ + G +      +  L  +   G  + A   L+D +RK ++P +
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           L DV +    L  M   G++EE +KFLE M   G  PDI+     ++  C      +A +
Sbjct: 100 LEDVESNNH-LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAK 158

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +   +   G  P V TYN++IS Y + GE + A      +D+   + DV TY  ++  L 
Sbjct: 159 ILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLC 215

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLGAIH--KLSDHMR 474
           D  K+++A  +L+ ++ +     Y    +Y + + +   D G  H  KL D MR
Sbjct: 216 DSGKLKQAMEVLDRMLQRDC---YPDVITYTILIEATCRDSGVGHAMKLLDEMR 266



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 23/182 (12%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +ML  + ++ KV   V+    IL Q + K      P +   N ++D L K G    A  +
Sbjct: 419 TMLTALCKDGKVEDAVE----ILNQLSSK---GCSPVLITYNTVIDGLAKAGKTGKAIKL 471

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K +KP+  TY+ L             ++   E  +MG  P+  T+N+ +   CK
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           +R    A D   FM  +G     P   +Y I+I  L      +E   LL  + N G +  
Sbjct: 532 SRQTDRAIDFLVFMINRGC---KPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK 588

Query: 307 VS 308
            S
Sbjct: 589 SS 590


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 182/400 (45%), Gaps = 34/400 (8%)

Query: 76  GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQF 135
            + L+ + V  +L RF+ + K A   F WA  +  Y H P AY+ M+DI+     K KQ 
Sbjct: 46  SIHLSHELVDKLLFRFKDDWKSALGVFRWAESRAGYKHSPEAYDTMVDIMG----KMKQM 101

Query: 136 RLVCSMLDYMKRNNKV-----------FVPVDVLLMILKQYTEKIKVKTQPEINALNLLL 184
             +  +L+ M++   V           F        +L+ + +      +    ++NLLL
Sbjct: 102 DQMEFLLEEMEKGQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLL 161

Query: 185 DALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP 232
           D LCK   V+ A  I   +K+ + PNANT+NI                T++EM   G  P
Sbjct: 162 DTLCKERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTP 221

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
              +Y+T +  +C     ++  +L + M  +G     P   TY  ++ AL +++  EE  
Sbjct: 222 CVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLI---PNVVTYTSVMSALAKSEEYEEAL 278

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE-EMGNKGYPPDIVTYNCFLKV 351
            +   M + GC PD   Y  ++  +  AG+ EEA +  E EM N G PP+  TYN  + +
Sbjct: 279 QIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAM 338

Query: 352 LCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE--MDKRGC 408
           LC +    +AL L   +   + C P VQTY  L+   F+ G  D       +  + K   
Sbjct: 339 LCHHSQERKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHL 398

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + D   Y +++ GL   +K E A  L EE++ K +   Y+
Sbjct: 399 SLDFSAYTLLVHGLCRANKCEWAYCLFEEMIGKDMTPKYQ 438



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 7/232 (3%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           H+P+   Y+T +D   K + + +   L E M  KG  ++  T            Q + + 
Sbjct: 83  HSPE--AYDTMVDIMGKMKQMDQMEFLLEEME-KGQHVTLKTVGKAMRRFAGARQWENVL 139

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
             F  LG     G   +  +   +L+ +C   KVE A +   ++ +    P+  T+N F+
Sbjct: 140 RVFDKLG---TFGLEKNTESMNLLLDTLCKERKVELAREIFLDLKSH-ISPNANTFNIFI 195

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C     +EA      M   GC P V +Y+ ++  Y         +E   EM+ +G  
Sbjct: 196 HGWCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLI 255

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            +V TY  ++  L    + EEA  + + + + G K     ++S +  L   G
Sbjct: 256 PNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAG 307


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 159/329 (48%), Gaps = 17/329 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------ 217
           + E    K  P++ + + L+++L + G  + A E + +      KPN  TYN L      
Sbjct: 32  FEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGK 91

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ L EM   G  PD  TYN  I T  KA  ++EA  LF  MR +G     P 
Sbjct: 92  AGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCV---PD 148

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L +  R ++   LL  M   GC PDV TY  ++ G+   G+  +A+K  +
Sbjct: 149 TFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQ 208

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G  PD +T+   +  L      D+AL L   M E G  P V TYN LI+ + ++G
Sbjct: 209 EMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVG 268

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           +   A+    EM + GC  DV TY  +I GL   S+++EAC +L+++  +G       ++
Sbjct: 269 DLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYN 328

Query: 452 SYLMQLSVIGDLGAIHKLSDHMR-KFYNP 479
           + +  L   G L    +L D M+ K  NP
Sbjct: 329 TLINGLGKAGLLNDAGRLFDRMKSKGCNP 357



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 164/370 (44%), Gaps = 43/370 (11%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           YN ++D L     KA QF     +L  M+ N  V                       P++
Sbjct: 82  YNTLVDCLG----KAGQFDEALRLLAEMRDNGCV-----------------------PDV 114

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEE 224
              N L+  L K G +  A T+   ++ +   P+  TYN L             M+ LEE
Sbjct: 115 RTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEE 174

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M + G  PD  TY++ I    K     +A  LF+ M+ +G     P + T+  ++ AL +
Sbjct: 175 MERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR---KPDSITFTALMDALGK 231

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+++   LL  M   G  P V TY  ++ G    G + EAY  L+EM   G  PD+VT
Sbjct: 232 AGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVT 291

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+C +  L      DEA ++  +M + GC P   TYN LI+   + G  + A   +  M 
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            +GC  DV TY  +I  L   ++VE AC L EE+ + G++     + S +  L   G + 
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 465 AIHKLSDHMR 474
              +L   MR
Sbjct: 412 DADRLFSEMR 421



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 147/321 (45%), Gaps = 16/321 (4%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
            K + E  +   +P+      L+DAL K G VD A  +   +K + VKP   TYN L   
Sbjct: 204 FKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAG 263

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L+EM + G  PD  TY+  I    KA  + EA  + + M  +G    
Sbjct: 264 FGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGC--- 320

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  L +   + +   L   M + GC PDV TY  ++  +  A +VE A  
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACV 380

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             EEM + G  PD+ TY   + VL      D+A RL+  M   G  P V TYN  ++   
Sbjct: 381 LFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLG 440

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G    A + + +M + G   DV TY  ++ GL    +V++AC LL+E++ +G      
Sbjct: 441 RGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSL 500

Query: 449 KFDSYLMQLSVIGDLGAIHKL 469
           KFD  L  L+  G++   H+L
Sbjct: 501 KFDECLEILTSWGNVDEAHEL 521



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 161/347 (46%), Gaps = 28/347 (8%)

Query: 140 SMLDYMKRNN-----KVFVPVDVLLMILKQYTEKIKVKTQ-------PEINALNLLLDAL 187
           ++LD MKRN        +  +   L+   Q  E  +V  +       P+    N L++ L
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334

Query: 188 CKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDN 234
            K GL++ A  +  R+K+K   P+  TY+ L                 EEM  +G  PD 
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDL 394

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           FTY + I    KA  V +A  LF  MR KG    SP   TY   + +L +  R +E   +
Sbjct: 395 FTYCSIITVLGKAGQVDDADRLFSEMRGKGL---SPDVITYNAFLNSLGRGGRFKEARKI 451

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M  SG LPDV+TY  +L G+    +V++A   L+E+  +G   D + ++  L++L  
Sbjct: 452 FEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTS 511

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
             N DEA  L       G WP   +YN LI    + G    AF T  ++ ++G   D+ +
Sbjct: 512 WGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVS 571

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           Y  +I  L    +++ A  LLEE+  +GLKL  R + + + +L   G
Sbjct: 572 YSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 11/260 (4%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +P+  TYN+ ++   KA    EA  LFE ++    T   P   +Y+ +I +L +  + E 
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWT---PDVVSYSCLINSLGRAGKWEA 62

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              ++  M   GC P++ TY  +++ +  AG+ +EA + L EM + G  PD+ TYNC + 
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIS 122

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            L       EA  L+  M E GC P   TYN LI    ++G    A E   EM++ GC  
Sbjct: 123 TLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPP 182

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           DV TY  +I GL    +  +A  L +E+  +G K     F + +  L   G +    +L 
Sbjct: 183 DVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELL 242

Query: 471 DHMRK--------FYNPVIA 482
           D M++         YN +IA
Sbjct: 243 DEMKERGVKPGVVTYNALIA 262


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 160/337 (47%), Gaps = 16/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VK 208
           + F  V  L   L  + E  +    P +   N L+DA CK G +D A  + K + +K ++
Sbjct: 18  RGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQ 77

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  +YN++              + LEEM   G  PD  TYNT ++ +CK     +A  +
Sbjct: 78  PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVI 137

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M   G    SP+  TY  +I ++ +   +         M   G  P+  TY  +++G
Sbjct: 138 HAEMVRNGV---SPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 194

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
               G + EAY+ L EM   G+ P +VTYN F+   C  +  +EAL +   M+E G  P 
Sbjct: 195 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 254

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V +Y+ +IS +   GE D AF+   EM ++G + D  TY  +I GL +  ++ EAC L +
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 314

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+++ GL      + + +    V GDL     L D M
Sbjct: 315 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM 351



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 16/274 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N LL+  CK G    A  I  + V+N V P+  TY  L             M+ 
Sbjct: 113 PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEF 172

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M   G  P+  TY T ID F +  ++ EA  +   M   G    SP+  TY   I  
Sbjct: 173 FDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF---SPSVVTYNAFIHG 229

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
               +RMEE   ++  M+  G  PDV +Y  ++ G C  G+++ A++  +EM  KG  PD
Sbjct: 230 HCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 289

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTY+  ++ LC+ +   EA  L   M+++G  P   TY  LI+ Y   G+ + A     
Sbjct: 290 AVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD 349

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           EM  +G   D  TY V+I+GL   ++  EA  LL
Sbjct: 350 EMIHKGFLPDAVTYSVLINGLNKQARTREAKRLL 383



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 131/283 (46%), Gaps = 15/283 (5%)

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           ++++V PN  TYNIL            G+    EM + G  P+  TYNT ID +CK   +
Sbjct: 2   IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 61

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            EA  L + M +KG     P   +Y ++I  L +   M+E + +L  M   G  PD  TY
Sbjct: 62  DEAFGLLKSMSSKG---MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTY 118

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +L G C  G   +A     EM   G  P +VTY   +  +C  +N + A+  + +M  
Sbjct: 119 NTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 178

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+ +TY  LI  +   G  + A+   +EM + G +  V TY   I G     ++EE
Sbjct: 179 RGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEE 238

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           A  +++E+V KGL      + + +      G+L    ++   M
Sbjct: 239 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 281



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 20/305 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D    +LK  + K     QP + + N++++ LC+ G +  A  I + +  K   P+  T
Sbjct: 61  IDEAFGLLKSMSSK---GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 117

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L             +    EM++ G +P   TY   I++ CKAR +  A + F+ MR
Sbjct: 118 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR 177

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +G     P  +TY  +I    +   + E + +L  M  SG  P V TY   + G C+  
Sbjct: 178 IRGL---RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 234

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++EEA   ++EM  KG  PD+V+Y+  +   C     D A ++   M+E G  P   TY+
Sbjct: 235 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 294

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI    E+     A +   EM   G   D  TY  +I+       + +A  L +E+++K
Sbjct: 295 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 354

Query: 442 GLKLP 446
           G  LP
Sbjct: 355 GF-LP 358



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MI+   +P+ +TYN  I  FC    + +    F  M   G     P   TY  +I A  +
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCL---PNVVTYNTLIDAYCK 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R++E F LL  M + G  P++ +Y  ++ G+C  G ++EA++ LEEMG KG+ PD VT
Sbjct: 58  MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  L   C   N  +AL ++  M+  G  PSV TY  LI+   +    + A E + +M 
Sbjct: 118 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            RG   +  TY  +IDG      + EA  +L E+   G       +++++
Sbjct: 178 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 227



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 38/312 (12%)

Query: 164 QYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---- 217
           ++ ++++++  +P       L+D   + GL++ A  I   + ++   P+  TYN      
Sbjct: 171 EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGH 230

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +  ++EM++ G APD  +Y+T I  FC+   +  A  + + M  KG    S
Sbjct: 231 CVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV---S 287

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P A TY+ +I  L +  R+ E   L   M++ G  PD  TY  ++   C+ G + +A   
Sbjct: 288 PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL 347

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---- 385
            +EM +KG+ PD VTY+  +  L       EA RL  ++I     PS  TY+ LI     
Sbjct: 348 HDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSN 407

Query: 386 --------------MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                         M   + E D  FE+   M +R        Y V+I G      + +A
Sbjct: 408 IEFKSVVALIKGFCMKGLMHEADRVFES---MVERNHKPGEAVYNVIIHGHCRGGNLPKA 464

Query: 432 CFLLEEVVNKGL 443
             L +E+++ G 
Sbjct: 465 FNLYKEMIHSGF 476



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 33/254 (12%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTL--- 222
           E ++    P++ + + ++   C+ G +D A  + +  V+  V P+A TY+ L +Q L   
Sbjct: 245 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSL-IQGLCEM 303

Query: 223 ----------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                     +EM+ MG  PD FTY T I+ +C    + +A  L + M  KG     P A
Sbjct: 304 RRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL---PDA 360

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE---------------GM 317
            TY+++I  L +  R  E   LL  +I    +P   TY  ++E               G 
Sbjct: 361 VTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGF 420

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C+ G + EA +  E M  + + P    YN  +   C   N  +A  LY  MI  G  P  
Sbjct: 421 CMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHT 480

Query: 378 QTYNMLISMYFELG 391
            T   LI   F+ G
Sbjct: 481 VTVITLIKALFKEG 494



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 78/177 (44%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           MI S   P+V TY  ++ G C  G++++      EM   G  P++VTYN  +   C    
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DEA  L   M   G  P++ +YN++I+     G    A+E   EM  +G   D  TY  
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           +++G        +A  +  E+V  G+      + + +  +    +L    +  D MR
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR 177


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 191/412 (46%), Gaps = 36/412 (8%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           I+ +S+   ++ KAL      +  D V+ VLQ+ +   ++A  FF WA     YAH P  
Sbjct: 89  ILKSSDGDTDLGKALHRFAGEMDEDVVLRVLQKQRSNWQVALLFFNWAAGLPAYAHGPRT 148

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD-VLLMILKQYTEKIKVKTQPE 176
           Y  M+DIL     + K+ +L+  + D +    +  V  +    ++L +Y    KV+   E
Sbjct: 149 YTEMLDILG----RMKKVKLMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIE 204

Query: 177 -------------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------ 217
                        +    +LL +LC+   V+ AE +  + K++  P   ++NI+      
Sbjct: 205 MFYKRKDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCV 264

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +   ++I     PD FTY T I++  KA  ++ A  LF  M  KG    +P 
Sbjct: 265 KGSLPDAKRIWNQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGI---NPD 321

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
                 +I  L    ++ E   +   M + GC  DV+TY  +++  C   + E+ Y+ L+
Sbjct: 322 VAICNCIIDQLCFKKKIPEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLD 381

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M NKG  P+ +TY+  LK     +   + + L  RM + GC     TYN+++++Y  + 
Sbjct: 382 DMENKGCSPNNMTYSYILKT---TEKPKDVIHLLQRMEKSGCRLDSDTYNLILNLYVSMK 438

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +G  + W EM++ G   D  ++ +M+ GL    ++++A      + ++G+
Sbjct: 439 YENGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGRLDQALQYYTTMKSRGM 490



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFM--RTKGSTISSPTAKTYAIMIVALVQND 286
            H P   TY   +D   + + V     LF+ +    +G  +   T +T+A+++       
Sbjct: 143 AHGPR--TYTEMLDILGRMKKVKLMTQLFDEIPEERRGLVV---TNRTFAVLLNRYAGAH 197

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +++E   +     + G   D+  ++ +L  +C    VEEA     +  ++ +PP I ++N
Sbjct: 198 KVQEAIEMFYKRKDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWN 256

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C   +  +A R++ ++I     P + TY   I+   + G+   A + +  M ++
Sbjct: 257 IILNGWCVKGSLPDAKRIWNQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEK 316

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           G   DV     +ID L    K+ EA  +  E+ ++G +     +++ +     I     +
Sbjct: 317 GINPDVAICNCIIDQLCFKKKIPEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKV 376

Query: 467 HKLSDHM 473
           ++L D M
Sbjct: 377 YELLDDM 383


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 159/358 (44%), Gaps = 54/358 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------------- 217
           P++ A N L+  LCK GLV  +E +  +V K  V PN  T+NI                 
Sbjct: 214 PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRN 273

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------- 264
                  + L +M+  G  PD+ TYN+ ID +CK  MV +A  + +    KG        
Sbjct: 274 SRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTY 333

Query: 265 -STISS-----------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
            S I+                        P+   Y  +I  L Q   +     L+  M  
Sbjct: 334 CSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAE 393

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +GCLP++ TY  V+ G+C  G V +A   +++   KG PPDI TYN  +   C     D 
Sbjct: 394 NGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDS 453

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  +  RM   G  P V TYN L++   + G+ +   E +  M+++GC  ++ TY +++D
Sbjct: 454 ATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVD 513

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478
            L    KV EA  LL E+ +KGLK     F +       IGD+   ++L   M K Y+
Sbjct: 514 SLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYD 571



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 129/284 (45%), Gaps = 19/284 (6%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P I   NL+++ LCK G V D +  +   +     P+  TYN L              + 
Sbjct: 398 PNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEM 457

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +  M   G  PD  TYNT ++  CKA    E  ++F+ M  KG T   P   TY I++ +
Sbjct: 458 VNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCT---PNIITYNIIVDS 514

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-- 339
           L +  ++ E   LLG M + G  PDV ++  +  G C  G ++ AY+    M  K Y   
Sbjct: 515 LCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM-EKQYDVC 573

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
               TYN  +    +  N + A++L+  M   GC P   TY ++I  + ++G     ++ 
Sbjct: 574 HTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKF 633

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             E  ++     + T+  +++ L    KV EA  ++  ++ KG+
Sbjct: 634 LLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGI 677



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 106/247 (42%), Gaps = 46/247 (18%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+I   N L+D  CK   +D A  +  R+ ++ + P+  TYN L             M+ 
Sbjct: 433 PDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEI 492

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------STISSP--- 270
            + M + G  P+  TYN  +D+ CKA+ V EA DL   M++KG         T+ +    
Sbjct: 493 FKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCK 552

Query: 271 ----------------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                 T  TY I++ A  +   M     L   M NSGC PD  
Sbjct: 553 IGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNY 612

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V++G C  G + + YKFL E   K + P + T+   L  LC      EA+ +   M
Sbjct: 613 TYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLM 672

Query: 369 IEVGCWP 375
           ++ G  P
Sbjct: 673 LQKGIVP 679



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 12/236 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + T E M      P   ++N  ++   +     +A  ++  MR +G         TY I
Sbjct: 95  AVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGV---QSDVYTYTI 151

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            I +  +  R      LL +M   GC  +   Y  V+ G+  +G+ + A +  +EM  + 
Sbjct: 152 RIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARC 211

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+V +N  + VLC      E+ RL G++++ G  P++ T+N+ +      G  D A 
Sbjct: 212 LCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAV 271

Query: 398 ---------ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
                    E   +M   G   D  TY  +IDG      V++A  +L++ V KG K
Sbjct: 272 RNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFK 327



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHM---INSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
           TA TY  ++  L  +   EE   LL  M   +N+  L     Y E ++     GKV+EA 
Sbjct: 39  TASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLE--GAYIEAMKNYGRKGKVQEAV 96

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              E M      P + ++N  + +L +    ++A ++Y RM + G    V TY + I  +
Sbjct: 97  DTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSF 156

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +   P  A      M + GC  +   YC ++ GL+D  + + A  L +E++ + L
Sbjct: 157 CKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCL 212



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +++E       M    C P V ++  ++  +   G   +A+K    M ++G   D+ TY 
Sbjct: 91  KVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYT 150

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +K  C       ALRL   M E+GC  +   Y  +++  ++ GE D A E + EM  R
Sbjct: 151 IRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLAR 210

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
               DV  +  ++  L     V E+  LL +V+ +G+      F+ ++  L   G L
Sbjct: 211 CLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGAL 267


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 195/455 (42%), Gaps = 83/455 (18%)

Query: 50  DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD 109
           DV  L   +   SN  + +E+   +L   +    V  VLQR + + + A  FF+WAG + 
Sbjct: 66  DVLDLLGLLQSGSNIRERLEQWRGTLQPAV----VSRVLQRLK-DPQTAIVFFVWAGDR- 119

Query: 110 NYAHEPLAYNLMIDIL----SSTKYKAK--------------QFRLVCSMLDYMKRNNKV 151
            + H     N  +  L    SS +  A                + LV   L  M + +K 
Sbjct: 120 GFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKA 179

Query: 152 FVPVDVLLMILKQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRV------- 203
           F  +D           K KV+  +PE++   +L  A CK G +  A  I + +       
Sbjct: 180 FTMLD-----------KAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIA 228

Query: 204 -------------------------KNKVKPNANTYNIL------------GMQTLEEMI 226
                                    + KV P+  TYNIL              + L EM+
Sbjct: 229 YNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMV 288

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  PD  T+N+ +D  CKA     A  L   M  +      P+  TY  +I  L +  
Sbjct: 289 DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC---RPSCCTYNTLISGLCKQQ 345

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            ++    L+   ++SG +PDV TY  + +G+C  G+++EA++ ++EM  KG  P++VTYN
Sbjct: 346 NVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYN 405

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC     ++A  L   ++  G  P V TY +++    + G  D A +    M KR
Sbjct: 406 TLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKR 465

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           GC   V TY  +++GL    +V+EA  + +E+V+K
Sbjct: 466 GCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 500



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 146/305 (47%), Gaps = 23/305 (7%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTY 214
           D  L  LK+  E+   K  P++   N+L+D LCK    D A E + + V   V P+  T+
Sbjct: 243 DGALEFLKEMNER---KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTF 299

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N +                L  M +    P   TYNT I   CK + V  A DL +   +
Sbjct: 300 NSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVS 359

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P   TY+I+   L +  R++E F L+  M   GC P++ TY  +++G+C A K
Sbjct: 360 SGFV---PDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASK 416

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            E+AY+ LE + + G+ PD+VTY   +  LC     D+AL++   M++ GC PSV TY  
Sbjct: 417 TEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTA 476

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+      G  D A   + EM  + C  D   Y  +++G    S+ +EA    ++VV+  
Sbjct: 477 LMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA----QKVVDGI 532

Query: 443 LKLPY 447
              PY
Sbjct: 533 RGTPY 537



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 173/392 (44%), Gaps = 38/392 (9%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-------------- 161
           + YN +ID L       K + L+ S++      +  FVP  V   I              
Sbjct: 402 VTYNTLIDGLCKASKTEKAYELLESLV------SSGFVPDVVTYTIIVDGLCKEGRLDKA 455

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK------------VKP 209
           LK     +K    P +     L++ LC+ G VD A  I K + +K            V  
Sbjct: 456 LKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNG 515

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
              +      Q + + I+    P    YN  +D +CK   + E  ++FE M  +G     
Sbjct: 516 YCKSSRTKEAQKVVDGIR--GTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCV--- 570

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P  KTY I++  L ++ +++E F  L  M ++GC+PDV +Y  +++G+  A K +EA + 
Sbjct: 571 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 630

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L++M   G PPD VTYN  +   C  +  D+A+ +   MI+ G  P   TYN LIS   +
Sbjct: 631 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 690

Query: 390 LGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                 A+E  HEM + GC      TY  +ID L     +++A  L++ +   G++    
Sbjct: 691 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV 750

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480
            ++ ++ +L   G L     L   M    + V
Sbjct: 751 TYNIFIDRLCKEGRLDEASSLLSEMDTLRDEV 782



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 163/365 (44%), Gaps = 48/365 (13%)

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161
           F+ + H      + ++YN++ID L    +KA + +    +LD M                
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDGL----FKASKPKEARQVLDQM---------------- 634

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--- 217
                  I+    P+    N L+   CK    D A  I K  +K  V P+  TYN L   
Sbjct: 635 -------IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 687

Query: 218 ---------GMQTLEEMIQMGHAPDN-FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      + + EM++ G       TYNT ID  CK   + +A  L + M   G  +
Sbjct: 688 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM--TGHGV 745

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            + T  TY I I  L +  R++E  SLL  M     L D  +Y  V+ G+C A +++ A 
Sbjct: 746 EANTV-TYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAEQLDRAS 801

Query: 328 KFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           K   EM   KG      T+N  +      K  DEAL L G M++ GC PSV TYNM+I+ 
Sbjct: 802 KLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITC 861

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             +L + D A+E + EM  RG      +Y V+I GL    + +EA  +LEE+ +   ++ 
Sbjct: 862 LCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEID 921

Query: 447 YRKFD 451
             K++
Sbjct: 922 DLKWE 926



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 21/283 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N+++D LCK G VD A    + + +    P+  +YNI+              Q 
Sbjct: 571 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 630

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++MIQ G  PD  TYNT +  FCK     +A  + + M   G     P   TY  +I  
Sbjct: 631 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV---DPDNVTYNTLISG 687

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDV-STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           L Q +R+ + + L+  M+ +GC+    +TY  +++ +C  G +++A   ++ M   G   
Sbjct: 688 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 747

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN F+  LC     DEA  L   + E+       +Y  +I    +  + D A +  
Sbjct: 748 NTVTYNIFIDRLCKEGRLDEASSL---LSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLA 804

Query: 401 HEMDK-RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            EM   +G      T+ ++ID      +++EA  LL  +V +G
Sbjct: 805 REMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRG 847


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 197/436 (45%), Gaps = 43/436 (9%)

Query: 51  VAKLYEAIIDNSNAYDNMEK-----ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA 105
           V K  +AI+D    + +  +      L+   + ++ + VV VL R + + + AF FF+WA
Sbjct: 8   VIKDVDAIMDIFRGFRDANRIQVRNKLEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWA 67

Query: 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN---NKVFVPVDVLLMI- 161
           G Q  YAH    Y+ MI IL     K ++F    +++D M+     + +  P  +L+MI 
Sbjct: 68  GKQPGYAHSVREYHSMISILG----KMRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIR 123

Query: 162 -----------LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
                      +  +    +      +     LL ALC+   V  AE +    K+    N
Sbjct: 124 RYCAVHDVAKAINTFYAHKRFGFNIGLEEFQSLLSALCRYKNVKDAEYLLFCNKDVFPFN 183

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             ++NI+              +  +EM + G + D  +Y + I  + K R + +   LFE
Sbjct: 184 TKSFNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFE 243

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M+        P  K Y  +I +L +   ++E   L+  M   G + +V TY  V++ +C
Sbjct: 244 DMK---RMKIDPDRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLC 300

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            A + +EA    EE+  +G  P I TY+ FL+ L   +  +E   L  +M  +GC P+  
Sbjct: 301 KARRFDEARAVFEELLQRGLCPTIQTYHAFLRFL---RTEEEIFELLKKMRTMGCNPTTD 357

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY MLI  +    + D     WHEM + G + D  +Y V+I GLF   K+E+A     E+
Sbjct: 358 TYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEM 417

Query: 439 VNKGLKLPYRKFDSYL 454
             K L LP  K D  L
Sbjct: 418 KEKDL-LPEPKIDEVL 432


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 179/385 (46%), Gaps = 37/385 (9%)

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI----LKQYT 166
           +A  P   +L +D LS+   + +Q  L  S+L    R+   F P    ++     + Q  
Sbjct: 88  HAVGPSTLDLALD-LSARLRRPRQ--LTNSILGLFPRHRLAFTPRTFPILFERLAVSQRR 144

Query: 167 EKIKVK----------TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
             + V+             ++   N LLDAL K      A ++ + ++ +  P+  TYN 
Sbjct: 145 PDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNT 204

Query: 217 LG------------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             +  L  M++ G AP   TYN  +  F +A  +  A D F  M+ +G
Sbjct: 205 LADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRG 264

Query: 265 STISS--PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           S   S  P   +Y  M+  L    ++E+   +   M   GC P V+TY  +++ +C  G 
Sbjct: 265 SKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGN 324

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           VE+A    + M  KGY P++VTY   ++ LC     D  L+L  RM   GC P VQTYN+
Sbjct: 325 VEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNV 384

Query: 383 LISMYFELGEPDGAFETWHEMDK-RGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEV 438
           LI   FE GE +   + + +M K   C  + DTY ++I  +F   + E+   A  +++E+
Sbjct: 385 LIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEM 444

Query: 439 VNKGLKLPYR-KFDSYLMQLSVIGD 462
           V++G  LP R  F+  L  L + G+
Sbjct: 445 VDRGY-LPRRFMFNRVLNGLMLTGN 468


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 144/271 (53%), Gaps = 17/271 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHA---------- 231
           L+  LCK G +D A  +   ++++ + P    +N + ++ L +  + G A          
Sbjct: 36  LIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGV-IRGLCKAGRFGDALGYFKTVAGT 94

Query: 232 ---PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
              PD  T+N  +D   K+  V EA  +FE M T    +  P   TY  +I  L ++ ++
Sbjct: 95  KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCL--PNVVTYTTVINGLCKDGKL 152

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +    LL  M  +GC P+V TY  ++EG+C AG+ ++ +  L+EM  +G+ PD++ YN  
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L  LC ++  DEAL L   MI  GC+P+V TYN L+ ++    + D AF     M +RGC
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             DV  Y  +I GL   +++++A  LL+++V
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMV 303



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 149/322 (46%), Gaps = 23/322 (7%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL------------ 217
           K  P+I   N+L+DAL K G V+ A  I + +    +  PN  TY  +            
Sbjct: 95  KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDR 154

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L+ M + G  P+  TY+  ++  CKA    +   L + M  +G     P    Y  
Sbjct: 155 AIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF---QPDVIMYNT 211

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L ++ R++E   L+  MI SGC P V TY  ++E  C + +V+ A++ ++ M  +G
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG-- 395
            PPD++ YN  +  LC +   D+A  L  +M+   C P V TY+ +I    +    D   
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW 331

Query: 396 ----AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               A E    M + GC  +  TY V+I+GL    K ++A  LL  +++  +      F 
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391

Query: 452 SYLMQLSVIGDLGAIHKLSDHM 473
             +  L    DL A +K+   M
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMM 413



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 29/290 (10%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP++   N LL+ LCK   +D A E +   +++   P   TYN L              +
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            ++ M + G  PD   YNT I   C+   + +A  L + M    +    P   TY+ +I 
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV---AARCVPDVITYSTIID 319

Query: 281 ALVQNDR------MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
            L ++ R      +E    +L  M  +GC P+  TY  V+EG+C A K ++A   L  M 
Sbjct: 320 GLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMI 379

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +    PD+ +++  +  LC + + D A +++G M E  C P+   Y  LI    + GE D
Sbjct: 380 DSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVD 439

Query: 395 GA---FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            A   FE   E  + G    V TY  ++DGL    ++EEA  ++E +++K
Sbjct: 440 KAVRVFELMVESFRPG----VATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 23/324 (7%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM------ 219
           I+    P +   N L++  C+   VD A  + + +  +   P+   YN  I G+      
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARL 292

Query: 220 ----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMV------TEAADLFEFMRTKGSTISS 269
                 L++M+     PD  TY+T ID  CK   V        A ++ E M+  G     
Sbjct: 293 DDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC---P 349

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P A TYA++I  L +  + ++  +LL  MI+S  +PD+S++  V+  +C +  ++ AYK 
Sbjct: 350 PNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI 409

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              M  +   P+ V Y   +  L      D+A+R++  M+E    P V TYN ++     
Sbjct: 410 FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCG 468

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G  + A      M  + C  D  +Y  +I GL   S VEEA  L + V  KG  +    
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           ++  + +L     L   H +++ +
Sbjct: 529 YNVLVNELCKKKRLSDAHGVANKL 552



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 134/289 (46%), Gaps = 23/289 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------------- 217
           P++   N ++  LC+   +D A+ + K+ V  +  P+  TY+ +                
Sbjct: 274 PDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + LE M Q G  P+  TY   I+  C+AR   +A      +R    +   P   ++
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA---LALLRRMIDSEVVPDLSSF 390

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +++I +L ++  ++  + + G M    C P+   Y  +++G+   G+V++A +  E M  
Sbjct: 391 SMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-V 449

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           + + P + TYN  L  LC     +EA+R+   MI   C+P   +Y  LI     +   + 
Sbjct: 450 ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE 509

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           A+E +  ++ +G A +V  Y V+++ L    ++ +A  +  +++  G K
Sbjct: 510 AYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 7/208 (3%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N A++   +A    +A  LF   R        P   TY  +I  L +  ++++ + LL  
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERC------VPNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M + G  P V+ +  V+ G+C AG+  +A  + + +      PDI+T+N  +  L  +  
Sbjct: 56  MRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 358 GDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
            +EA +++  M     C P+V TY  +I+   + G+ D A E    M++ GC  +V TY 
Sbjct: 116 VEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           V+++GL    + ++   LL+E+  +G +
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 37/300 (12%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVF-----VPVDVLLMILKQ 164
           + YN ++++   +K   + FRL+  M       D +  N  +        +D    +LKQ
Sbjct: 242 VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDY---AETICKRV----KNKVKPNANTYNIL 217
               +  +  P++   + ++D LCK   VD     E  C+ +    +    PNA TY ++
Sbjct: 302 M---VAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                        +  L  MI     PD  +++  I + CK+  +  A  +F  M  +  
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P    YA +I  L +   +++   +   M+ S   P V+TY  VL+G+C  G++EE
Sbjct: 419 ---KPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEE 474

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A + +E M +K   PD  +Y   ++ LC     +EA  L+  +   G    V  YN+L++
Sbjct: 475 AVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 45/107 (42%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+  TY   +  LC     D+A  L   M + G  P V  +N +I    + G    A   
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +  +    C  D+ T+ +++D L    +VEEA  + E +      LP
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLP 134


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 198/431 (45%), Gaps = 41/431 (9%)

Query: 40  VFDESSD-SVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
           V D S D  VS++ K    I+ + +    + + L+     +  D V+ VLQ+ +   K+A
Sbjct: 74  VLDGSKDVHVSEIVK----ILKSRDGDSELAEVLNQFSDEMDEDVVLKVLQKQRSNWKVA 129

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
             FF WA     Y H   AY  M+DIL     + K+ RL+  + D +   ++  V  + +
Sbjct: 130 LSFFKWAAGLPQYNHGSRAYTEMLDILG----RMKKVRLMRQLFDEIPMESRQSVITNRM 185

Query: 159 L-MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVK 204
             ++L +Y    KV+              + ++    +LL +LC+   V+ AE +  + K
Sbjct: 186 FAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKK 245

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
           ++  P   ++NI+              +   E+I     PD FTY T I++  K+  ++ 
Sbjct: 246 DEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLST 305

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  LF  M  KG    +P       +I  L    R+ E   + G M + GC  DV+TY  
Sbjct: 306 AVKLFTSMWEKGI---NPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNT 362

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++  C   ++E+ Y+ L++M  KG  P+ +TY+  LK     +   + + L  RM + G
Sbjct: 363 LIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKT---TEKPKDVISLMQRMEKSG 419

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C     TYN+++++Y       G    W EM++ G   D  ++ +M+ GL    K++EA 
Sbjct: 420 CRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHGKLDEAL 479

Query: 433 FLLEEVVNKGL 443
                + ++G+
Sbjct: 480 HYYRTMESRGM 490



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 105/240 (43%), Gaps = 6/240 (2%)

Query: 236 TYNTAIDTFCKARMVTEAADLFE--FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            Y   +D   + + V     LF+   M ++ S I   T + +A+++       +++E   
Sbjct: 148 AYTEMLDILGRMKKVRLMRQLFDEIPMESRQSVI---TNRMFAVLLNRYAGAHKVQEAID 204

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +     + G   D+  ++ +L  +C    VEEA     +  ++ +PP I ++N  L   C
Sbjct: 205 MFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWNIILNGWC 263

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
              +  +A R++  +I     P + TY   I+   + G+   A + +  M ++G   DV 
Sbjct: 264 VKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVA 323

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
               +ID L    ++ EA  +  E+ ++G +     +++ +     I  +  +++L D M
Sbjct: 324 ICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDM 383


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 144/271 (53%), Gaps = 17/271 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHA---------- 231
           L+  LCK G +D A  +   ++++ + P    +N + ++ L +  + G A          
Sbjct: 36  LIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGV-IKGLCKAGRFGDALGYFKTVAGT 94

Query: 232 ---PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
              PD  T+N  +D   K+  V EA  +FE M T    +  P   TY  +I  L ++ ++
Sbjct: 95  KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCL--PNVVTYTTVINGLCKDGKL 152

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +    LL  M  +GC P+V TY  ++EG+C AG+ ++ +  L+EM  +G+ PD++ YN  
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L  LC ++  DEAL L   MI  GC+P+V TYN L+ ++    + D AF     M +RGC
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             DV  Y  +I GL   +++++A  LL+++V
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMV 303



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 149/322 (46%), Gaps = 23/322 (7%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL------------ 217
           K  P+I   N+L+DAL K G V+ A  I + +    +  PN  TY  +            
Sbjct: 95  KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDR 154

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L+ M + G  P+  TY+  ++  CKA    +   L + M  +G     P    Y  
Sbjct: 155 AIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF---QPDVIMYNT 211

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L ++ R++E   L+  MI SGC P V TY  ++E  C + +V+ A++ ++ M  +G
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG-- 395
            PPD++ YN  +  LC +   D+A  L  +M+   C P V TY+ +I    +    D   
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW 331

Query: 396 ----AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               A E    M + GC  +  TY V+I+GL    K ++A  LL  +++  +      F 
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391

Query: 452 SYLMQLSVIGDLGAIHKLSDHM 473
             +  L    DL A +K+   M
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMM 413



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 29/290 (10%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP++   N LL+ LCK   +D A E +   +++   P   TYN L              +
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            ++ M + G  PD   YNT I   C+   + +A  L + M    +    P   TY+ +I 
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV---AARCVPDVITYSTIID 319

Query: 281 ALVQNDR------MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
            L ++ R      +E    +L  M  +GC P+  TY  V+EG+C A K ++A   L  M 
Sbjct: 320 GLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMI 379

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +    PD+ +++  +  LC + + D A +++G M E  C P+   Y  LI    + GE D
Sbjct: 380 DSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVD 439

Query: 395 GA---FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            A   FE   E  + G    V TY  ++DGL    ++EEA  ++E +++K
Sbjct: 440 KAVRVFELMVESFRPG----VATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 23/324 (7%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM------ 219
           I+    P +   N L++  C+   VD A  + + +  +   P+   YN  I G+      
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARL 292

Query: 220 ----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMV------TEAADLFEFMRTKGSTISS 269
                 L++M+     PD  TY+T ID  CK   V        A ++ E M+  G     
Sbjct: 293 DDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC---P 349

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P A TYA++I  L +  + ++  +LL  MI+S  +PD+S++  V+  +C +  ++ AYK 
Sbjct: 350 PNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI 409

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              M  +   P+ V Y   +  L      D+A+R++  M+E    P V TYN ++     
Sbjct: 410 FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCG 468

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G  + A      M  + C  D  +Y  +I GL   S VEEA  L + V  KG  +    
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           ++  + +L     L   H +++ +
Sbjct: 529 YNVLVNELCKKKRLSDAHGVANKL 552



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 134/289 (46%), Gaps = 23/289 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------------- 217
           P++   N ++  LC+   +D A+ + K+ V  +  P+  TY+ +                
Sbjct: 274 PDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + LE M Q G  P+  TY   I+  C+AR   +A      +R    +   P   ++
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA---LALLRRMIDSEVVPDLSSF 390

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +++I +L ++  ++  + + G M    C P+   Y  +++G+   G+V++A +  E M  
Sbjct: 391 SMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-V 449

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           + + P + TYN  L  LC     +EA+R+   MI   C+P   +Y  LI     +   + 
Sbjct: 450 ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE 509

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           A+E +  ++ +G A +V  Y V+++ L    ++ +A  +  +++  G K
Sbjct: 510 AYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 7/208 (3%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N A++   +A    +A  LF   R        P   TY  +I  L +  ++++ + LL  
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERC------VPNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M + G  P V+ +  V++G+C AG+  +A  + + +      PDI+T+N  +  L  +  
Sbjct: 56  MRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 358 GDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
            +EA +++  M     C P+V TY  +I+   + G+ D A E    M++ GC  +V TY 
Sbjct: 116 VEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           V+++GL    + ++   LL+E+  +G +
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 37/300 (12%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVF-----VPVDVLLMILKQ 164
           + YN ++++   +K   + FRL+  M       D +  N  +        +D    +LKQ
Sbjct: 242 VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDY---AETICKRV----KNKVKPNANTYNIL 217
               +  +  P++   + ++D LCK   VD     E  C+ +    +    PNA TY ++
Sbjct: 302 M---VAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                        +  L  MI     PD  +++  I + CK+  +  A  +F  M  +  
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P    YA +I  L +   +++   +   M+ S   P V+TY  VL+G+C  G++EE
Sbjct: 419 ---KPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEE 474

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A + +E M +K   PD  +Y   ++ LC     +EA  L+  +   G    V  YN+L++
Sbjct: 475 AVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 45/107 (42%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+  TY   +  LC     D+A  L   M + G  P V  +N +I    + G    A   
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +  +    C  D+ T+ +++D L    +VEEA  + E +      LP
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLP 134


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 146/296 (49%), Gaps = 20/296 (6%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTY 214
           D L  + +  T  IK    P+    N +L  LC+   V+ A  + ++ VK ++ PN  TY
Sbjct: 27  DALATVEEMATRGIK----PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTY 82

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L              +  +EM   G+ P   +YNT ID FCK + +  A D+F+ M  
Sbjct: 83  NTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR 142

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
                  P   TY  +I  L ++ +++    +L  M+  G  P+V+TY  +++G C   +
Sbjct: 143 SNCV---PNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 199

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V+EA+K LE+M  +G  P +VTYN  L  LC     ++A +L+  M +  C P+V TYN 
Sbjct: 200 VDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNT 259

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           L+       + DGA   + EM  +GC  D  TY  +  GL    KV EA  L+E++
Sbjct: 260 LLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 150/313 (47%), Gaps = 16/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+      +++ LCK   +D A  T+ +     +KP+A  YN +                
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+M++    P+  TYNT I+  CKA  +  A +LF+ M  KG     PT  +Y  +I  
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV---PTEVSYNTLIDG 123

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   +     +   M+ S C+P+V TY  +++G+  +GKV+ A + L+ M  KG  P+
Sbjct: 124 FCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN 183

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TY+C +   C  +  DEA +L  +M+  G  P+V TYN+L++      + + AF+ + 
Sbjct: 184 VATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFR 243

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M +R C   V TY  ++  L    +++ A  L  E++ KG       +D+    L+  G
Sbjct: 244 GMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAG 303

Query: 462 DLGAIHKLSDHMR 474
            +    +L + M+
Sbjct: 304 KVHEAQELMEKMK 316



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%)

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PPD +TY   ++ LC  K  D+AL     M   G  P    YN ++S   +  + + A  
Sbjct: 6   PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARL 65

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            + +M K+    +V TY  +I+GL    ++E A  L +E+  KG
Sbjct: 66  LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKG 109


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 151/326 (46%), Gaps = 52/326 (15%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
             ++     P++ A N ++   C  G +D A  +   +   V+P+A TYN L        
Sbjct: 115 ARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMP--VEPDAYTYNTLIRGLCGRG 172

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                +  L+EM++    PD  TY   ++  CK     +A  L + MR KG T   P   
Sbjct: 173 RTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCT---PDIV 229

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY +++  + Q  R+++    L ++ + GC P+  +Y  VL+G+C A + E+A + + EM
Sbjct: 230 TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM 289

Query: 334 GNKGYPPDIVT-----------------------------------YNCFLKVLCDNKNG 358
           G KG PP++VT                                   YN  L   C  K  
Sbjct: 290 GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 349

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           D+A+     M+  GC+P + +YN L++     GE D A E  H++  +GCA  + +Y  +
Sbjct: 350 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 409

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLK 444
           IDGL    K +EA  LL E+V+KGL+
Sbjct: 410 IDGLTKAGKTKEALELLNEMVSKGLQ 435



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P   + N++L  LC     + AE +   +  K   PN  T+N+L             ++
Sbjct: 260 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 319

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE++ + G  P++ +YN  +  FCK + + +A    + M ++G     P   +Y  ++ 
Sbjct: 320 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY---PDIVSYNTLLT 376

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++  ++    LL  + + GC P + +Y  V++G+  AGK +EA + L EM +KG  P
Sbjct: 377 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 436

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+     LC     ++A+R +G++ ++G  P+   YN +I    +  E   A + +
Sbjct: 437 DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLF 496

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M   GC  +  TY ++I+GL     ++EA  LL+E+ ++G+
Sbjct: 497 AYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV 539



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 139/285 (48%), Gaps = 18/285 (6%)

Query: 201 KRVKNKVKPNANTYNIL-----GMQTLEE----MIQMGHAPDNFTYNTAIDTFC-KARMV 250
           +RV     P+   YN +     G   L+     + +M   PD +TYNT I   C + R  
Sbjct: 116 RRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTA 175

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
              A L E +R +      P   TY I++ A  +    ++   LL  M + GC PD+ TY
Sbjct: 176 NALAVLDEMLRRR----CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTY 231

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             V+ G+C  G+V++A +FL+ + + G  P+ V+YN  LK LC  +  ++A  L G M +
Sbjct: 232 NVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQ 291

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC P+V T+NMLIS     G  + A E   ++ K GC  +  +Y  ++       K+++
Sbjct: 292 KGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDK 351

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA----IHKLSD 471
           A   L+ +V++G       +++ L  L   G++      +H+L D
Sbjct: 352 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD 396



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 16/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E ++ +  P++    +LL+A CK      A  +   +++K   P+  TYN++        
Sbjct: 183 EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 242

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L+ +   G  P+  +YN  +   C A    +A +L   M  KG     P   
Sbjct: 243 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGC---PPNVV 299

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ ++I  L +   +E    +L  +   GC P+  +Y  +L   C   K+++A  FL+ M
Sbjct: 300 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 359

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G  PDIV+YN  L  LC +   D A+ L  ++ + GC P + +YN +I    + G+ 
Sbjct: 360 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 419

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A E  +EM  +G   D+ TY  +  GL    ++E+A     +V + G++
Sbjct: 420 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIR 470



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 9/197 (4%)

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           + R +    +L E +R  GS    P A T A +I  L  + R  E   +L     + C P
Sbjct: 71  RLRSLVRRGELDEALRLVGSA-RRPDAGTCAALIKKLSASGRTAEARRVL-----AACGP 124

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           DV  Y  ++ G C AG+++ A + + EM  +   PD  TYN  ++ LC       AL + 
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVL 181

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M+   C P V TY +L+    +      A +   EM  +GC  D+ TY V+++G+   
Sbjct: 182 DEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 241

Query: 426 SKVEEACFLLEEVVNKG 442
            +V++A   L+ + + G
Sbjct: 242 GRVDDAIEFLKNLPSYG 258


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 166/337 (49%), Gaps = 23/337 (6%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPN 210
           F  V  L   LK +   +K    P++   N L++  CK   +D A+ I +R V   + P+
Sbjct: 55  FCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPD 114

Query: 211 ANTYNIL--GM---QTLEE----MIQMGHAPDNFTYNTAIDTFCKA-RMVTEAADLFEFM 260
             TYN L  G+     ++E    ++  G +P+  TY+T I   C+  R V+EA  LF  +
Sbjct: 115 VVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSV 174

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
             +G     P   TY I+I  L++ DR+ E F L   ++  G  PD  TY   ++G+C A
Sbjct: 175 LKQGY---EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKA 231

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G+VE+A   L++M  KG  PD+V++N  +  LC  K  DEA  L   M   GC P+  ++
Sbjct: 232 GRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISF 291

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEE 437
           N LI      G+   A  T+ EM KRG    V TY +++DGL       +++EA  L + 
Sbjct: 292 NTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDA 351

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           ++ KG      +    +   ++I  LG   KL D  R
Sbjct: 352 MIEKG------RVPDVVTYSALIDGLGKAGKLDDARR 382



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 19/252 (7%)

Query: 204 KNKVKPNANTYNIL--GM---------QTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           K+   PN  TYN L  G+         Q L E MI+ G++PD  TYNT +  FCK   + 
Sbjct: 3   KHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELD 62

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           EA  +F+    +G     P   TY  +I    + D+++E   +L  M++   +PDV TY 
Sbjct: 63  EALKIFDGAVKRGFV---PDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN 119

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG-DEALRLYGRMIE 370
            ++ G+C  G+V+EA   + +   KG+ P+++TY+  +  LC    G  EAL+L+G +++
Sbjct: 120 SLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLK 176

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P V TYN+LI    +    + AFE +  + K G   D  TY V IDGL    +VE+
Sbjct: 177 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 236

Query: 431 ACFLLEEVVNKG 442
           A  +L+++  KG
Sbjct: 237 ALLMLKDMDEKG 248



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 19/274 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           LK +   +K   +PE+   N+L+D L K   V+ A E     VK+ ++P+A TY +    
Sbjct: 168 LKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 227

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +  L++M + G  PD  ++N  I+  CK + V EA  L   M  KG    
Sbjct: 228 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGC--- 284

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA---GKVEE 325
           SP A ++  +I    +  + ++  +    M+  G  P V TY  +++G+C A   G+++E
Sbjct: 285 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 344

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A    + M  KG  PD+VTY+  +  L      D+A RL G M   GC P+V TYN LIS
Sbjct: 345 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 404

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
               L + D A E +  M ++GC  D  TY  +I
Sbjct: 405 GLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 138/319 (43%), Gaps = 56/319 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------------GMQT 221
           P++   N L++ LCK G VD A  +   V     PN  TY+ L              ++ 
Sbjct: 113 PDVVTYNSLVNGLCKNGRVDEARMLI--VDKGFSPNVITYSTLISGLCRELRGVSEALKL 170

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              +++ G+ P+  TYN  ID   K   V EA +LF  +   G     P A TY + I  
Sbjct: 171 FGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGL---EPDAITYTVFIDG 227

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----------------------- 318
           L +  R+E+   +L  M   GC+PDV ++  V+ G+C                       
Sbjct: 228 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 287

Query: 319 ------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD---EALR 363
                        AGK ++A    +EM  +G  P +VTYN  +  LC  +      EA+ 
Sbjct: 288 AISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAIT 347

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  MIE G  P V TY+ LI    + G+ D A      M+ +GC  +V TY  +I GL 
Sbjct: 348 LFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLC 407

Query: 424 DCSKVEEACFLLEEVVNKG 442
              KV+EA  L   +V KG
Sbjct: 408 GLEKVDEALELFVAMVEKG 426



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   G  P+  TY  +L G+C  G++ +A    E M   GY PD+VTYN  L   C    
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DEAL+++   ++ G  P V TYN LI+ + +  + D A      M       DV TY  
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGL 443
           +++GL    +V+EA  L   +V+KG 
Sbjct: 121 LVNGLCKNGRVDEARML---IVDKGF 143


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 196/423 (46%), Gaps = 26/423 (6%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
           +PL+ D V  +L R++ + K A   F WA  + ++ H   +Y++M+DIL   K   K   
Sbjct: 71  IPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVMEKLRD 130

Query: 137 LVCSM-------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK 189
           L+  M       ++ + +  + FV     +  ++ + +   +  +    ++NLLLD LCK
Sbjct: 131 LLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTLCK 190

Query: 190 CGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
              V  A  I   +K  + PNA+T+NI                T++EM   G  P   +Y
Sbjct: 191 EKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISY 250

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           +T I  +C+    +   +L + M+ +G    S    TY  ++ AL +  + EE   +   
Sbjct: 251 STLIQCYCQEGNFSRVYELLDEMQAQG---CSANVITYTSIMCALGKAKKFEEALKVPER 307

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           M +SGC PD   +  ++  +  AG++++A   F  EM   G  P+  TYN  + + C + 
Sbjct: 308 MRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHA 367

Query: 357 NGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGAF-ETWHEM-DKRGCAQDVD 413
               AL +   M    GC P  QTY+ LI   F  G+ DG   E  ++M +K+  + D+ 
Sbjct: 368 QEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLS 427

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY ++I GL    +   A  L EE++++ +   YR     L ++       A  K+ D M
Sbjct: 428 TYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQAAEKIEDLM 487

Query: 474 RKF 476
           +K 
Sbjct: 488 KKL 490


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 194/439 (44%), Gaps = 54/439 (12%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           SD   + + +I N N +  ME +L   G+ LT + +   L R +   KIA  FF +    
Sbjct: 39  SDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSL 98

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
            + +  P ++NL+IDIL     + +QF +V  ++  M + +    P   L+++ +     
Sbjct: 99  PSPSTTPTSFNLIIDILG----RVRQFDVVRQLIVEMDQTS----PETFLILVKRLIAAG 150

Query: 169 IKVKTQPEINALN-----------------LLLDALCKCGLVDYAETICKRVKNKVKPNA 211
           +   T+  + A +                  LLD LCK G    A  +    K +   + 
Sbjct: 151 L---TRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDE 207

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA----------RM 249
             Y IL              + L EMI+ G  P+  TYN  ++  C+           R 
Sbjct: 208 KVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERN 267

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V  A  +F+ MR +G     P   +++I++    +  + E     +  M   G  P + T
Sbjct: 268 VRNAEKVFDEMRQRGI---EPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIET 324

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  V++ +C  G++EEA + LE M   G  P   TYNCF K     K+ + A+ LY +M 
Sbjct: 325 YTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMK 384

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
              C PS QTYN+L+  +  LG+ +   E W ++       D+D+Y  ++ GL    K +
Sbjct: 385 NGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWK 444

Query: 430 EACFLLEEVVNKGLKLPYR 448
           EAC    E++ +G  LP +
Sbjct: 445 EACGYFVEMIERGF-LPQK 462



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M++ G +P + TYN     +   +    A +L+  M+   + +  P+ +TY +++   + 
Sbjct: 348 MVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMK---NGLCKPSTQTYNVLLGTFIN 404

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             +ME    +   +  S   PD+ +Y  ++ G+C   K +EA  +  EM  +G+ P  +T
Sbjct: 405 LGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLT 464

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIE 370
           +    K L  +       RL  ++ E
Sbjct: 465 FETLYKGLIQSNKMRTWRRLKKKLDE 490


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 196/444 (44%), Gaps = 40/444 (9%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           ++D+  A + +EK+L   G  L  D V  V+ R   +   A+  F WAG Q  + H    
Sbjct: 46  VVDSKRAGEGIEKSLGLYGDILVPDLVGKVIHRIP-DPNTAWEVFQWAGKQSKFTHNRFT 104

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL-MILKQYTEKIKVKTQ-- 174
            N ++ +        K  R+  + L +      VF P +V    ++  + +   VK    
Sbjct: 105 CNNLLSVY------VKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALA 158

Query: 175 ----------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------- 217
                       + + N++L  LC  G +  A  + K +     PN  +Y I+       
Sbjct: 159 LFGEMKDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKS 218

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +   ++M+     PD  TY   ID   K R V EA DLFE  R KG     PT 
Sbjct: 219 RKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC---HPTV 275

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            TY  MI  L +  R+E   +L   M+    L PD+ TY  ++ G+ L+ + E+AY+  E
Sbjct: 276 VTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYE 335

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFE 389
           EM + G  PD+VTYN  L  LC +   D+A+ ++ R + VG  C P+V TY +LI  + +
Sbjct: 336 EMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIF-RKMGVGNVCDPNVITYTVLIDRFCK 394

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +     A +   EM+ R    D  T+  +I  L   S+++EA  L E  + K  K     
Sbjct: 395 VDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFES-IGKTCKPDSVL 453

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           F++ L     I  +    KL D M
Sbjct: 454 FNTMLAGYCKITRIDDAKKLHDRM 477



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 146/319 (45%), Gaps = 35/319 (10%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-- 173
           ++Y +MID L  ++   K   L   M+D       ++  V     ++    ++ +VK   
Sbjct: 206 ISYTIMIDGLCKSRKVDKAITLFKQMVD-----KAIYPDVVTYGALIDGLGKQRRVKEAY 260

Query: 174 -----------QPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL--- 217
                       P +   N ++D LCKCG ++ A T+   +  +  +KP+  TY+ L   
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALING 320

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +  EEM+  G +PD  TYNT +D  CK+    +A ++F  M      + 
Sbjct: 321 LNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGV--GNVC 378

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY ++I    + DR+ +   L   M     LPD  T+  V++ +C   +++EA++
Sbjct: 379 DPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHE 438

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E +G K   PD V +N  L   C     D+A +L+ RM++ GC P++ TY  L++ + 
Sbjct: 439 LFESIG-KTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFC 497

Query: 389 ELGEPDGAFETWHEMDKRG 407
             G    A   +HEM + G
Sbjct: 498 RTGRYSDALIMYHEMIEMG 516



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR--VKNKVKPNANTYNIL----- 217
           Y E +     P++   N LLD LCK G  D A  I ++  V N   PN  TY +L     
Sbjct: 334 YEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFC 393

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   ++  +EM      PD  T+ T I   CK   + EA +LFE +   G T   P
Sbjct: 394 KVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESI---GKT-CKP 449

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
            +  +  M+    +  R+++   L   M++SGC P ++TY  ++ G C  G+  +A    
Sbjct: 450 DSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMY 509

Query: 331 EEMGNKGYPPD 341
            EM   G+PP+
Sbjct: 510 HEMIEMGFPPE 520


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 52/325 (16%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
            ++    +P++ A N ++   C  G +D A  +   +   ++P++ TYN L         
Sbjct: 114 RRVLAACEPDVMAYNAMVAGYCVTGQLDAARRLVADMP--MEPDSYTYNTLIRGLCGRGR 171

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               +  L++M++ G  PD  TY   ++  CK     +A  L + MR KG    +P   T
Sbjct: 172 TGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGC---APDIIT 228

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y +++  + Q  R+++    L  + + GC P+  +Y  VL+G+C A + E+A K + EM 
Sbjct: 229 YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 288

Query: 335 NKGYPPDIVT-----------------------------------YNCFLKVLCDNKNGD 359
            KGYPP++VT                                   YN  L   C  K  D
Sbjct: 289 QKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMD 348

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A+     M+  GC+P + +YN L++     GE D A E  H++  +GC   + +Y  +I
Sbjct: 349 RAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 408

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLK 444
           DGL    K +EA  LL E+V KGL+
Sbjct: 409 DGLTKAGKTKEALELLNEMVTKGLQ 433



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 140/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P   + N++L  LC     + AE +   +  K   PN  T+N+L             M+
Sbjct: 258 EPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAME 317

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+++ + G  P++ +YN  +  FCK + +  A    E M ++G     P   +Y  ++ 
Sbjct: 318 VLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCY---PDIVSYNTLLT 374

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +   ++    LL  + + GC P + +Y  V++G+  AGK +EA + L EM  KG  P
Sbjct: 375 ALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQP 434

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+     LC     +EA+R + ++ ++G  P+   YN ++    +  E   A + +
Sbjct: 435 DIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLF 494

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M   GC  +  TY ++I+GL     V+EA  LL E+ ++G+
Sbjct: 495 IYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGV 537



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 23/312 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------GMQTLEEMI-QMGHAPD 233
           L+  LC  G    A    +RV    +P+   YN +         +     ++  M   PD
Sbjct: 100 LIKKLCASGRTAEA----RRVLAACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPMEPD 155

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           ++TYNT I   C       A  + + M  +G     P   TY I++ A  +    ++   
Sbjct: 156 SYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCV---PDVVTYTILLEATCKRSGYKQAMK 212

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  M   GC PD+ TY  V+ G+C  G+V++A +FL+ + + G  P+ V+YN  LK LC
Sbjct: 213 LLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLC 272

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +  ++A +L   M + G  P+V T+NMLIS     G  + A E   ++ K GC  +  
Sbjct: 273 TAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSL 332

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA----IHKL 469
           +Y  ++       K++ A   +E +V++G       +++ L  L   G++ A    +H+L
Sbjct: 333 SYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 392

Query: 470 SDHMRKFYNPVI 481
            D   K   PV+
Sbjct: 393 KD---KGCTPVL 401



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++    +LL+A CK      A  +   ++ K   P+  TYN++             ++ 
Sbjct: 189 PDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEF 248

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ +   G  P+  +YN  +   C A    +A  L   M  KG     P   T+ ++I  
Sbjct: 249 LKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY---PPNVVTFNMLISF 305

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   +E    +L  +   GC P+  +Y  +L   C   K++ A  F+E M ++G  PD
Sbjct: 306 LCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPD 365

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IV+YN  L  LC     D A+ L  ++ + GC P + +YN +I    + G+   A E  +
Sbjct: 366 IVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLN 425

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           EM  +G   D+ TY  +  GL    ++EEA     +V + G++     +++ L+ L
Sbjct: 426 EMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGL 481



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 43/195 (22%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  N R+   F+  G   +   +P  +   + L G+   G +EEA + +E M   G  P 
Sbjct: 36  LTPNSRLN--FAHAGVAASPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESM--SGLEPS 91

Query: 342 IVTYNC--FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-------- 391
                C   +K LC +    EA     R +   C P V  YN +++ Y   G        
Sbjct: 92  AAPGPCAALIKKLCASGRTAEA-----RRVLAACEPDVMAYNAMVAGYCVTGQLDAARRL 146

Query: 392 ------EPDG------------------AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
                 EPD                   A     +M +RGC  DV TY ++++     S 
Sbjct: 147 VADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSG 206

Query: 428 VEEACFLLEEVVNKG 442
            ++A  LL+E+  KG
Sbjct: 207 YKQAMKLLDEMRAKG 221


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 196/456 (42%), Gaps = 65/456 (14%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF-----M 103
           +D   L + ++ + N +  ME +L   G+ LT   +   L R +   KIA   F     +
Sbjct: 55  NDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHNSKIALSLFHHSLSL 114

Query: 104 WAGHQDN--------------YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149
                DN                   + YNLMIDIL+    K +QF +   ++  M + N
Sbjct: 115 PPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILA----KVRQFDVCWQLIVEMDQRN 170

Query: 150 ------------KVFVPVDVLLMILKQYTEKIKVKTQPEINALNL--LLDALCKCGLVDY 195
                       +  V   +    ++ + +     ++P +N  +   LLD LCK G V  
Sbjct: 171 VKPTSETFFVLIRRLVAAGLTRQAIRAFDDMESFVSEP-VNETHFCFLLDTLCKYGYVKV 229

Query: 196 AETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDT 243
              I  + K++  PN   Y +L              + L+E  + G      TYN  ++ 
Sbjct: 230 GVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLKETGERGIEATVVTYNVLLNG 289

Query: 244 FCK----------ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            C+           R +T A +LF+ MR +G     P   +++I++    +  + E    
Sbjct: 290 ICRRASLHPESRFERTITLAENLFDEMRERGI---EPDVTSFSIVLHVYSRAHKPELTLD 346

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
            L  M   G  P V TY  V++ +C  G++E+A + L EM   G     VTYNCF K   
Sbjct: 347 KLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYM 406

Query: 354 DNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
             K+ + AL+LY +M E G     + +YN+L+ M+  L   D   E W ++   G   D+
Sbjct: 407 GRKDAESALKLYKKMREDGLGSLGLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDL 466

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           D+Y ++I GL +  K  EAC    E++ KGL LP +
Sbjct: 467 DSYTMLIHGLCEKEKWREACKFFVEMIEKGL-LPQK 501



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 21/270 (7%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT-YAIM 278
           Q + EM Q    P + T+   I     A +  +A   F+ M    S +S P  +T +  +
Sbjct: 161 QLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDDME---SFVSEPVNETHFCFL 217

Query: 279 IVALVQNDRME---ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +  L +   ++   E F+   H  +    P+V  Y  ++ G C  G+++ A +FL+E G 
Sbjct: 218 LDTLCKYGYVKVGVEIFNKRKHRFS----PNVKMYTVLIYGWCKIGRIDMAERFLKETGE 273

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALR----------LYGRMIEVGCWPSVQTYNMLIS 385
           +G    +VTYN  L  +C   +     R          L+  M E G  P V ++++++ 
Sbjct: 274 RGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFSIVLH 333

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +Y    +P+   +    M ++G    V TY  ++  L  C ++E+A  LL E+V  G+  
Sbjct: 334 VYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRNGVSR 393

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
               ++ +  +     D  +  KL   MR+
Sbjct: 394 TAVTYNCFFKEYMGRKDAESALKLYKKMRE 423



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 28/194 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     ++  LC CG ++ AE +                      L EM++ G +   
Sbjct: 358 PSVVTYTSVVKCLCSCGRIEDAEEL----------------------LGEMVRNGVSRTA 395

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN     +   +    A  L++ MR  G  + S    +Y I++   +  +R++    +
Sbjct: 396 VTYNCFFKEYMGRKDAESALKLYKKMREDG--LGSLGLHSYNILLRMFMMLNRLDIVNEI 453

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              + +SG  PD+ +Y  ++ G+C   K  EA KF  EM  KG  P  VT+    K L  
Sbjct: 454 WEDLKSSGLGPDLDSYTMLIHGLCEKEKWREACKFFVEMIEKGLLPQKVTFETLYKGLIQ 513

Query: 355 NKNGDEALRLYGRM 368
           +    + LR + R+
Sbjct: 514 S----DMLRTWRRL 523


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 188/415 (45%), Gaps = 39/415 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           M+  ++  G+ ++ + V+ VL R + + + AF FF+WA  Q  YAH    Y+ MI IL  
Sbjct: 42  MKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPGYAHSVREYHSMISILG- 100

Query: 128 TKYKAKQFRLVCSMLDYM---KRNNKVFVPVDVLLMILK------------QYTEKIKVK 172
              K ++F     ++D M   K    +  P  +L+MI K             +    + K
Sbjct: 101 ---KMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDVGRAINTFYAYKRFK 157

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------------GM 219
               I     LL ALC+   V  AE +    K     N  ++NI+               
Sbjct: 158 FDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVLNGWCNLIGSPRESE 217

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +   EM + G   D  +Y + +  + KA  +     L++ M+  G     P  K Y  +I
Sbjct: 218 RVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGI---EPDRKVYNAVI 274

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            AL +   + E F+L+  M   G  P++ TY  +++ +C A KVEEA    ++M  +   
Sbjct: 275 HALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRCIS 334

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P I TY+ FL++L   + G+E   L  +M ++GC P   TY MLI  +    + +  F+ 
Sbjct: 335 PTIRTYHAFLRIL---RTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLENVFKL 391

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           W EM + G + D  +Y V+I GLF   +++ A     E+  K L LP  K D  L
Sbjct: 392 WDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQL-LPEPKIDEML 445


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 197/430 (45%), Gaps = 41/430 (9%)

Query: 41  FDESSD-SVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
            D S D  VS++ K    I+ + +    + + L+     +  D V+ VLQ+ +   K+A 
Sbjct: 75  LDGSKDVHVSEIVK----ILKSRDGDSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVAL 130

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
            FF WA     Y H   AY  M+DIL     + K+ RL+  + D +   ++  V  + + 
Sbjct: 131 SFFKWAAGLPQYNHGSRAYTEMLDILG----RMKKVRLMRQLFDEIPVESRQSVVTNRMF 186

Query: 160 -MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKN 205
            ++L +Y    KV+              + ++    +LL +LC+   V+ AE +  + K+
Sbjct: 187 AVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKD 246

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           +  P   ++NI+              +   E+I     PD FTY T I++  K+  ++ A
Sbjct: 247 EFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTA 306

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             LF  M  KG    +P       +I  L    R+ E   + G M + GC  DV+TY  +
Sbjct: 307 VKLFTSMWEKGI---NPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTL 363

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           ++  C   ++E+ Y+ L++M  KG  P+ +TY+  LK     +   + + L  RM + GC
Sbjct: 364 IKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKT---TEKPKDVISLMQRMEKSGC 420

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
                TYN+++++Y       G    W EM++ G   D  ++ +M+ GL    K++EA  
Sbjct: 421 RLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALH 480

Query: 434 LLEEVVNKGL 443
               + ++G+
Sbjct: 481 YYRTMESRGM 490



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 104/238 (43%), Gaps = 2/238 (0%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            Y   +D   + + V     LF+ +  + S  S  T + +A+++       +++E   + 
Sbjct: 148 AYTEMLDILGRMKKVRLMRQLFDEIPVE-SRQSVVTNRMFAVLLNRYAGAHKVQEAIDMF 206

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
               + G   D+  ++ +L  +C    VEEA     +  ++ +PP I ++N  L   C  
Sbjct: 207 YKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWNIILNGWCVK 265

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
            +  +A R++  +I     P + TY   I+   + G+   A + +  M ++G   DV   
Sbjct: 266 GSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAIC 325

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +ID L    ++ EA  +  E+ ++G +     +++ +     I  +  +++L D M
Sbjct: 326 NCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDM 383


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 197/431 (45%), Gaps = 41/431 (9%)

Query: 40  VFDESSD-SVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
             D S D  VS++ K    I+ + +    + + L+     +  D V+ VLQ+ +   K+A
Sbjct: 54  ALDGSKDVHVSEIVK----ILKSRDGDSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVA 109

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
             FF WA     Y H   AY  M+DIL     + K+ RL+  + D +   ++  V  + +
Sbjct: 110 LSFFKWAAGLPQYNHGSRAYTEMLDILG----RMKKVRLMRQLFDEIPVESRQSVVTNRM 165

Query: 159 L-MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVK 204
             ++L +Y    KV+              + ++    +LL +LC+   V+ AE +  + K
Sbjct: 166 FAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKK 225

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
           ++  P   ++NI+              +   E+I     PD FTY T I++  K+  ++ 
Sbjct: 226 DEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLST 285

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  LF  M  KG    +P       +I  L    R+ E   + G M + GC  DV+TY  
Sbjct: 286 AVKLFTSMWEKGI---NPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNT 342

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++  C   ++E+ Y+ L++M  KG  P+ +TY+  LK     +   + + L  RM + G
Sbjct: 343 LIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKT---TEKPKDVISLMQRMEKSG 399

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C     TYN+++++Y       G    W EM++ G   D  ++ +M+ GL    K++EA 
Sbjct: 400 CRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEAL 459

Query: 433 FLLEEVVNKGL 443
                + ++G+
Sbjct: 460 HYYRTMESRGM 470



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 104/238 (43%), Gaps = 2/238 (0%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            Y   +D   + + V     LF+ +  + S  S  T + +A+++       +++E   + 
Sbjct: 128 AYTEMLDILGRMKKVRLMRQLFDEIPVE-SRQSVVTNRMFAVLLNRYAGAHKVQEAIDMF 186

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
               + G   D+  ++ +L  +C    VEEA     +  ++ +PP I ++N  L   C  
Sbjct: 187 YKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWNIILNGWCVK 245

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
            +  +A R++  +I     P + TY   I+   + G+   A + +  M ++G   DV   
Sbjct: 246 GSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAIC 305

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +ID L    ++ EA  +  E+ ++G +     +++ +     I  +  +++L D M
Sbjct: 306 NCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDM 363


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 175/390 (44%), Gaps = 46/390 (11%)

Query: 69  EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
           EKAL+ L + L    V  VL +   E  +  +FF WAG + N+ H+   Y  +I  L   
Sbjct: 80  EKALEVLKLKLDIRLVREVL-KIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIRCLDEN 138

Query: 129 KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
           +   + +R +  M                           +K       + L+ ++  L 
Sbjct: 139 RLVGELWRTIQDM---------------------------VKSPCAIGPSELSEIVKILG 171

Query: 189 KCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMGHA-PDN 234
           +  +V+ A +I  +VK  K +P A TYN + +  ++E            M   GH  PD 
Sbjct: 172 RVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDT 231

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY+  I  F K      A  LF+ M+  G     PTAK Y  ++    +  ++EE  +L
Sbjct: 232 VTYSALISAFGKLNRDDSAVRLFDEMKENGL---QPTAKIYTTLMGIYFKLGKVEEALNL 288

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           +  M    C+P V TY E++ G+  +G+VE+AY   + M   G  PD+V  N  + +L  
Sbjct: 289 VHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGR 348

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRGCAQDVD 413
           +    EA+ L+  M  + C P+V TYN +I   FE   P     +W E M K G      
Sbjct: 349 SDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSF 408

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 409 TYSILIDGFCKTNRVEKALLLLEEMDEKGF 438



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 17/304 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y   +K   +P++  +N L++ L +   +  A  + + ++     PN  TYN +      
Sbjct: 324 YKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFE 383

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                      LE M + G  P +FTY+  ID FCK   V +A  L E M  KG     P
Sbjct: 384 DKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF---PP 440

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y  +I +L +  R E    L   +  +     V  Y  +++     G+  EA    
Sbjct: 441 CPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLF 500

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM   G  PD+  YN  +  +      DEA  L+  M E GC P + ++N++++     
Sbjct: 501 NEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLART 560

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G P  A E + +M       D  +Y  ++  L      EEA  L++E+ +KG +     +
Sbjct: 561 GGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITY 620

Query: 451 DSYL 454
            S L
Sbjct: 621 SSIL 624



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 140/313 (44%), Gaps = 17/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNA----NTYNILG--------MQT 221
           P +     L+  L K G V+ A  + K  +K+  KP+     N  NILG        ++ 
Sbjct: 299 PTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVEL 358

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMV-TEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            EEM  +   P+  TYNT I +  + +   +EA+   E M+  G     P++ TY+I+I 
Sbjct: 359 FEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVV---PSSFTYSILID 415

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              + +R+E+   LL  M   G  P  + Y  ++  +  A + E A +  +E+       
Sbjct: 416 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSS 475

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            +  Y   +K        +EA+ L+  M ++GC P V  YN LI+        D AF  +
Sbjct: 476 SVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLF 535

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
             M++ GC  D++++ ++++GL      + A  +  ++ +  +K     +++ L  LS  
Sbjct: 536 RTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRA 595

Query: 461 GDLGAIHKLSDHM 473
           G      KL   M
Sbjct: 596 GLFEEATKLMKEM 608



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 10/216 (4%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM--IVALVQNDRM-E 289
           D+ TY   I    + R+V E        RT    + SP A   + +  IV ++   +M  
Sbjct: 124 DSTTYMALIRCLDENRLVGE------LWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVN 177

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCF 348
           +  S+   +    C P   TY  V+  +   G  E+ ++   EM ++G+  PD VTY+  
Sbjct: 178 KALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSAL 237

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +         D A+RL+  M E G  P+ + Y  L+ +YF+LG+ + A    HEM  R C
Sbjct: 238 ISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRC 297

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              V TY  +I GL    +VE+A  + + ++  G K
Sbjct: 298 VPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCK 333


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 148/349 (42%), Gaps = 55/349 (15%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKR--VKNKVKPNANTYNIL---------- 217
            ++  P+    + L+D LCKCG  D A   C    +     PN  TYN L          
Sbjct: 218 SLRVSPDTVTFSTLIDGLCKCGQTDEA---CNDDMIAGGYVPNVVTYNALVNGLCKADKM 274

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 +E M+  G  PD  TY+  +D FCKA  V EA +L   M ++G T   P   T+
Sbjct: 275 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCT---PNVVTF 331

Query: 276 AIMIVALVQNDRMEECF-----------------------------------SLLGHMIN 300
             +I  L ++DR  E F                                   +L   M+ 
Sbjct: 332 NSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVA 391

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
               PDV T+  +++G+C AG+VE A   L+ MGN G PP++VTYN  +  LC +   +E
Sbjct: 392 KNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEE 451

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
                  M+  GC P   TY  L+         D A +   ++   G   D  TY +++D
Sbjct: 452 PCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVD 511

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           GL+   K E+A  +LEE+V KG +     F +    L   G+L    +L
Sbjct: 512 GLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMEL 560



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 18/333 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++ + E +K    P++   N L+D+LCK G ++ A  +   + ++   PN  TY++L   
Sbjct: 101 MELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLING 160

Query: 218 ---------GMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      + ++EM +      P+  TYN+ +D  CK  M  EA +L   +R  GS 
Sbjct: 161 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR-DGSL 219

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             SP   T++ +I  L +  + +E  +    MI  G +P+V TY  ++ G+C A K+E A
Sbjct: 220 RVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERA 277

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           +  +E M +KG  PD++TY+  +   C     DEAL L   M   GC P+V T+N +I  
Sbjct: 278 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 337

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             +      AF+   ++  R    D  T+ ++I G       E+A  L EE+V K ++  
Sbjct: 338 LCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPD 397

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
              F + +  L   G + A   + D M     P
Sbjct: 398 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 430



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 140/292 (47%), Gaps = 23/292 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKR--VKNKVKPNANTYNIL------------GMQTLEEMI 226
           N++L +LC+ G    A  I +    ++ V P   TYN +            GM+  EE++
Sbjct: 49  NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 108

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + GH PD  TYNT ID+ CKA  + EA  L   M ++G     P   TY+++I  L +  
Sbjct: 109 KRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCV---PNVVTYSVLINGLCKVG 165

Query: 287 RMEECFSLLGHMINSGC--LPDVSTYKEVLEGMCLAGKVEEAYKFLEEM--GNKGYPPDI 342
           R++E   L+  M    C  LP++ TY   L+G+C      EA + +  +  G+    PD 
Sbjct: 166 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 225

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VT++  +  LC     DEA      MI  G  P+V TYN L++   +  + + A      
Sbjct: 226 VTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIES 283

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           M  +G   DV TY V++D     S+V+EA  LL  + ++G       F+S +
Sbjct: 284 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSII 335



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 133/286 (46%), Gaps = 19/286 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA-- 231
           P++   ++L+DA CK   VD A E +         PN  T+N + +  L +  + G A  
Sbjct: 291 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI-IDGLCKSDRSGEAFQ 349

Query: 232 -----------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                      PD  T+N  I   CKA    +A+ LFE M  K      P   T+  +I 
Sbjct: 350 IALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM---QPDVMTFGALID 406

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  ++E    +L  M N G  P+V TY  ++ G+C +G++EE  +FLEEM + G  P
Sbjct: 407 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVP 466

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + +TY   +  LC     D+AL+L  ++   G  P   TYN+L+   ++ G+ + A    
Sbjct: 467 ESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVL 526

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            EM  +G   D  T+     GL     +     LL  V+ KG+ LP
Sbjct: 527 EEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGM-LP 571



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 115/259 (44%), Gaps = 16/259 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N ++D LCK      A  I  +V N+ + P+  T+NIL                
Sbjct: 326 PNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASAL 385

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM+     PD  T+   ID  CKA  V  A D+ + M   G     P   TY +++  
Sbjct: 386 FEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV---PPNVVTYNVLVHG 442

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+EE    L  M++SGC+P+  TY  ++  +C A + ++A + + ++ + G+ PD
Sbjct: 443 LCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPD 502

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +  L  +   ++A+ +   M+  G  P   T+          G   G  E   
Sbjct: 503 TVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLR 562

Query: 402 EMDKRGCAQDVDTYCVMID 420
            +  +G   D  T   ++D
Sbjct: 563 VVLAKGMLPDATTCSSILD 581



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 8/192 (4%)

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL-GHMINSGCLPDVSTYKEVLE 315
           F F+R+     SS +   Y I++ +L +         +  G M   G  P + TY  ++ 
Sbjct: 35  FFFVRS-----SSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIIN 89

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G+C + ++    +  EE+  +G+ PD+VTYN  +  LC   + +EA RL+G M   GC P
Sbjct: 90  GLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVP 149

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGC--AQDVDTYCVMIDGLFDCSKVEEACF 433
           +V TY++LI+   ++G  D A E   EM ++ C    ++ TY   +DGL   S   EAC 
Sbjct: 150 NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACE 209

Query: 434 LLEEVVNKGLKL 445
           L+  + +  L++
Sbjct: 210 LMRSLRDGSLRV 221



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 117/283 (41%), Gaps = 45/283 (15%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL------------- 162
           + +N +ID L  +    + F++       ++  N++ VP  V   IL             
Sbjct: 329 VTFNSIIDGLCKSDRSGEAFQIA------LQVYNRMLVPDKVTFNILIAGACKAGNFEQA 382

Query: 163 -KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
              + E +    QP++     L+D LCK G V+ A  I                      
Sbjct: 383 SALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDI---------------------- 420

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M  +G  P+  TYN  +   CK+  + E  +  E M + G     P + TY  ++ A
Sbjct: 421 LDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCV---PESMTYGSLVYA 477

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R ++   L+  + + G  PD  TY  +++G+  +GK E+A   LEEM  KG+ PD
Sbjct: 478 LCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPD 537

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
             T+      L  + N    + L   ++  G  P   T + ++
Sbjct: 538 SFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 376 SVQTYNMLISMYFELGEPDGAFETWH-EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           SV  YN+++      GE   A E +  EM + G A  + TY  +I+GL   +++     L
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            EE+V +G       +++ +  L   GDL    +L   M
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGM 142


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 184/398 (46%), Gaps = 32/398 (8%)

Query: 71  ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
           ALD L    ++  V  VL RF  +   A  FF WA  Q  Y H P   NLM+DIL     
Sbjct: 114 ALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQTGYRHSPELCNLMVDILG---- 169

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ-------------YTEKIKVKTQPEI 177
           K K F  +  +++ M +  + +V ++ +  ++++             +    K     + 
Sbjct: 170 KCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHEDAIEAFRRMDKFGVNKDT 229

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            ALN+L+DAL K   V++A  +    K  +  +++++N+L              + +E+M
Sbjct: 230 AALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVLMHGWCRARKFDNARKAMEDM 289

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            ++G  PD F+Y + I+ +C  R   +   + E MR  G     P A TY  +++ L + 
Sbjct: 290 KELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGC---PPNAVTYTTVMLHLGKA 346

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            ++ +   +   M   GC+ D   Y  ++  +  AG++++A    E+M  +G   D+VTY
Sbjct: 347 GQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTY 406

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +   C +   + ALRL   M +  C P+V TY+ L+ M  +             M K
Sbjct: 407 NTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFK 466

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              + D+ TY ++++ L    KV +A   LEE+V KG 
Sbjct: 467 NDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGF 504


>gi|7340725|emb|CAB82968.1| putative protein [Arabidopsis thaliana]
          Length = 308

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 129/260 (49%), Gaps = 18/260 (6%)

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           +  PN  TY +L              +   +MI  G  PD   +N  ++   ++   ++A
Sbjct: 2   RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDA 61

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             LF  M++KG     P  ++Y IMI    +   ME        M++SG  PD + Y  +
Sbjct: 62  IKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL 118

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G     K++  Y+ L+EM  KG+PPD  TYN  +K++ + K  +   R+Y +MI+   
Sbjct: 119 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI 178

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            PS+ T+NM++  YF     +     W EM K+G   D ++Y V+I GL    K  EAC 
Sbjct: 179 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACR 238

Query: 434 LLEEVVNKGLKLP---YRKF 450
            LEE+++KG+K P   Y KF
Sbjct: 239 YLEEMLDKGMKTPLIDYNKF 258



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 34/287 (11%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANT 213
           V  L+   + + + I    +P+I A N++L+ L +      A  +   +K+K   PN  +
Sbjct: 20  VRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 79

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y I+             ++  ++M+  G  PD   Y   I  F   + +    +L + M+
Sbjct: 80  YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 139

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            KG     P  KTY  +I  +      E    +   MI +   P + T+  +++   +A 
Sbjct: 140 EKGH---PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVAR 196

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
             E      +EM  KG  PD  +Y   ++ L       EA R    M++ G    +  YN
Sbjct: 197 NYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYN 256

Query: 382 MLISMYFELGEPD------------------GAFETWHEMDKRGCAQ 410
              + +   G+P+                    F  W +M +R C Q
Sbjct: 257 KFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 303



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P+++TY   L   C  +N  EA R++  MI+ G  P +  +N+++       +   A 
Sbjct: 3   FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAI 62

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + +H M  +G   +V +Y +MI      S +E A    +++V+ GL+     +   +   
Sbjct: 63  KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF 122

Query: 458 SVIGDLGAIHKLSDHMR--------KFYNPVIARRLALNQK 490
                L  +++L   M+        K YN +I  +L  NQK
Sbjct: 123 GTQKKLDTVYELLKEMQEKGHPPDGKTYNALI--KLMANQK 161


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 181/393 (46%), Gaps = 20/393 (5%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           L+S+   L  D+VV VL   Q + + A RFF WA  Q+ Y H   AY  MIDIL     +
Sbjct: 174 LNSMAQDLNPDAVVKVLN-LQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILG----R 228

Query: 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG 191
           AK F  + S+L  M+   +  +   +L   +  Y    + K   E  A NL+ +   + G
Sbjct: 229 AKMFTELQSLLQKMQTQGRE-ITRSMLHSFVMSYGRSGRFKESLE--AFNLMKEMGYEPG 285

Query: 192 LVD--YAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
           L+D  Y   +   VKNK    A            +MI  G + +N TY + I  F     
Sbjct: 286 LIDTAYNSVLVSLVKNKKLDMAENL-------FAQMINNGVSCNNLTYTSMIQCFFLKEK 338

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           + +A  L + M        +P   TY I+I AL +   +E+ + +L  M  +GC P++ T
Sbjct: 339 MEDAMKLLDDMIQNNY---APDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYT 395

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +++G+C   + EEA + +  M   G PP+I TY      LC  +  D A  ++   +
Sbjct: 396 YNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEAL 455

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G  P+  TYN L++ Y        A +   EM +  C  D  TY  +I GL   +++ 
Sbjct: 456 ARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLP 515

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           +A  + +E+ NKG  + +   +     L+ +G+
Sbjct: 516 DALRMHDEMENKGYDVNFDTLNILARGLARVGN 548



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 190/458 (41%), Gaps = 54/458 (11%)

Query: 34  PSLVCKVFDESSDSVSDV-----AKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVL 88
           P  V KV +  +D+ + +     A   E    N++AY  M   +D LG       +  +L
Sbjct: 183 PDAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTM---IDILGRAKMFTELQSLL 239

Query: 89  QRFQFEEKIAFR-----FFMWAGHQDNYAHEPLAYNLMIDI-----LSSTKY-------- 130
           Q+ Q + +   R     F M  G    +     A+NLM ++     L  T Y        
Sbjct: 240 QKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLV 299

Query: 131 KAKQFRLVCSMLDYMKRN----NKVFVPVDVLLMILKQYTEK--------IKVKTQPEIN 178
           K K+  +  ++   M  N    N +     +    LK+  E         I+    P++ 
Sbjct: 300 KNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVV 359

Query: 179 ALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEM 225
              +++ ALCK  +++ A  + ++++ N  +PN  TYN L             ++ +  M
Sbjct: 360 TYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLM 419

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            Q G  P+ +TY       CK R +  A ++F     +G     P   TY  ++    + 
Sbjct: 420 EQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGL---KPNRVTYNTLLNGYCRG 476

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R+ E   +L  M  + C PD  TY  +++G+    ++ +A +  +EM NKGY  +  T 
Sbjct: 477 SRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTL 536

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N   + L    N  +A   Y RM + G   S   Y + I      GE + A    +EM  
Sbjct: 537 NILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMIN 596

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +G + ++ TY  MI G     ++++A  +L  ++  G+
Sbjct: 597 KGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGI 634



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 137/321 (42%), Gaps = 24/321 (7%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLLMILKQYT 166
           Q+NYA + + Y ++I  L   K   + + ++  M +   + N   +  +   L  +++  
Sbjct: 351 QNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPE 410

Query: 167 EKIKVKT-------QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL- 217
           E +++ T        P I    +L   LCK   +D A E   + +   +KPN  TYN L 
Sbjct: 411 EALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLL 470

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       M  L+EM Q    PD+ TY T I    +   + +A  + + M  KG  
Sbjct: 471 NGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYD 530

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           ++     T  I+   L +    ++       M + G     S Y   +  +  AG++EEA
Sbjct: 531 VN---FDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEA 587

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
              L EM NKGY P++ TYN  +K  C     D+A  +   MIE G  P   +YN+LI  
Sbjct: 588 QALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKE 647

Query: 387 YFELGEPDGAFETWHEMDKRG 407
           +   G    A + +    +RG
Sbjct: 648 FHNQGRTQDADQLYATALERG 668


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 181/413 (43%), Gaps = 34/413 (8%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL-------SSTK 129
           +P  T S V  L  F  + + A  FF W   +  + H   +Y+ M++IL        + K
Sbjct: 63  LPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEK 122

Query: 130 YKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK 189
            +    +  CS+ D +      FV     L + ++     + K +P +   N +L +L K
Sbjct: 123 IRISMIKSCCSIEDVL------FV-----LEVFRKMNADGEFKFKPTLRCYNTILMSLSK 171

Query: 190 CGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFT 236
             L+D  +T+  + + N++ PN  T+N +                  +++Q G  PD FT
Sbjct: 172 FLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFT 231

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y + I   C+ + V  A ++F  M  KG         +Y  +I  L +  R+ E   L  
Sbjct: 232 YTSLILGHCRNKGVDNAYEVFLIMPQKGC---QRNEVSYTNLIHGLCEAGRINEALKLFA 288

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M    C P V TY  ++  +  +G+  EA     EM  KG  P++ TY   +  LC   
Sbjct: 289 DMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKEN 348

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             DEA ++   M E G  PSV TYN LI  Y + G  D AFE    M+   C  +  TY 
Sbjct: 349 KMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYN 408

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            +I GL    KV +A  LL +++ + L      ++S +     + DL + ++L
Sbjct: 409 ELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 51/318 (16%)

Query: 175 PEINALNLLLDALCKCGLVD--------------------YAETIC-------------- 200
           P +   N L+D  CK G++D                    Y E IC              
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426

Query: 201 --KRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             K ++ K+ P+  TYN L              + L  M + G  PD +TY+  IDT CK
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              V EA  LF+ ++ KG   +      Y  +I    +  +++  +SLL  M+N  CLP+
Sbjct: 487 EGRVEEAGTLFDSVKAKGVKANE---VIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             TY  ++EG+C   K++EA   + +M   G  P +VTY   +  +  +   D AL+++ 
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+ +G  P V TY   +  YF  G  +   +   +M++ G   D+ TY V+IDG     
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663

Query: 427 KVEEACFLLEEVVNKGLK 444
               A   L+ +V+ G K
Sbjct: 664 LTHRAFDFLKCMVDTGCK 681



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 17/332 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK + +  +    P +    +L+ AL   G    A  +   +K K  +PN +TY +L   
Sbjct: 284 LKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDG 343

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + L EM + G  P   TYN  ID +CK  M+ +A ++ + M    S   
Sbjct: 344 LCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME---SNSC 400

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P  +TY  +I  L +  ++ +  +LL  M+     P + TY  ++ G C    +E AY+
Sbjct: 401 GPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYR 460

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  M   G  PD  TY+ F+  LC     +EA  L+  +   G   +   Y  LI  Y 
Sbjct: 461 LLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC 520

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+ D A+     M    C  +  TY V+I+GL    K++EA  L+ +++  G+K    
Sbjct: 521 KVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVV 580

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKF-YNP 479
            +   + ++   G      K+ +HM    Y P
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 134/322 (41%), Gaps = 45/322 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    ++ +D LCK G V+ A T+   VK K VK N   Y  L                
Sbjct: 472 PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSL 531

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE M+     P+++TYN  I+  CK + + EA+ L   M T G     PT  TY I+I  
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV---KPTVVTYTILIGE 588

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           ++++   +    +  HM++ G  PDV TY   L      G +EE    + +M  +G  PD
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI----------SMYFELG 391
           +VTY   +           A      M++ GC PS+   ++LI              E+G
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 392 -------------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
                              E + A + + +M + GC  DV  Y  +I G     ++EEA 
Sbjct: 709 IDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQ 768

Query: 433 FLLEEVVNKGLKLPYRKFDSYL 454
            L+  +  +G+      ++S L
Sbjct: 769 GLVHHMKERGMSPSEDIYNSLL 790



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 126/336 (37%), Gaps = 74/336 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQT 221
           P     N+L++ LCK   +  A + + K +   VKP   TY IL             ++ 
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL------------------------- 256
              M+ +G+ PD  TY   +  +    M+ E  D+                         
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 257 -------FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG------------- 296
                  F+F++    T   P+    +I+I  L   +RM+E  S +G             
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIA 721

Query: 297 ----------------HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                            M+  GC  DVS Y  ++ G C   ++EEA   +  M  +G  P
Sbjct: 722 DVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 781

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
               YN  L   C      EA+RL   M+E G  P +++Y +L+   +  G  + A   +
Sbjct: 782 SEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVF 841

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           H +   G   D   + V+IDGL     V+E   L++
Sbjct: 842 HGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELID 877


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 153/299 (51%), Gaps = 17/299 (5%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GMQTLEE 224
           ++N+++   CK G V+ A    + + N+    P+  T+N L             ++ ++ 
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+Q G+ PD +TYN+ I   CK   V EA ++ + M T+     SP   TY  +I  L +
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC---SPNTVTYNTLISTLCK 377

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            +++EE   L   + + G LPDV T+  +++G+CL      A +  EEM +KG  PD  T
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +  LC     DEAL +  +M   GC  SV TYN LI  + +  +   A E + EM+
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             G +++  TY  +IDGL    +VE+A  L+++++ +G K     ++S L      GD+
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 142/297 (47%), Gaps = 18/297 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL------EEMIQ 227
           P++   N ++  LCK G V  A E + + +     PN  TYN L + TL      EE  +
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL-ISTLCKENQVEEATE 386

Query: 228 M-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           +       G  PD  T+N+ I   C  R    A +LFE MR+KG     P   TY ++I 
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC---EPDEFTYNMLID 443

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L    +++E  ++L  M  SGC   V TY  +++G C A K  EA +  +EM   G   
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN  +  LC ++  ++A +L  +MI  G  P   TYN L++ +   G+   A +  
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             M   GC  D+ TY  +I GL    +VE A  LL  +  KG+ L    ++  +  L
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 43/399 (10%)

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149
           R Q ++  A R F  A  + N++ EP  Y  ++  L     ++  F  +  +L+ MK ++
Sbjct: 58  RSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLG----RSGSFDDMKKILEDMK-SS 112

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEI-NALNLLLDALCKCGLVDYAETICKRVKNKVK 208
           +  +     L++++ Y +    + Q EI + ++ ++D                     +K
Sbjct: 113 RCEMGTSTFLILIESYAQ---FELQDEILSVVDWMIDEF------------------GLK 151

Query: 209 PNANTYN----ILGMQTLEEMIQMGHA--------PDNFTYNTAIDTFCKARMVTEAADL 256
           P+ + YN    +L      +++++ HA        PD  T+N  I   C+A  +  A  +
Sbjct: 152 PDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILM 211

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            E M + G     P  KT+  ++   ++   ++    +   M+  GC     +   ++ G
Sbjct: 212 LEDMPSYGLV---PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268

Query: 317 MCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            C  G+VE+A  F++EM N+ G+ PD  T+N  +  LC   +   A+ +   M++ G  P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            V TYN +IS   +LGE   A E   +M  R C+ +  TY  +I  L   ++VEEA  L 
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             + +KG+      F+S +  L +  +     +L + MR
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 167/399 (41%), Gaps = 34/399 (8%)

Query: 75  LGVPLTTDSVVGVLQRFQFEEKI--AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKA 132
            G   +  SV  ++  F  E ++  A  F     +QD +  +   +N +++ L     KA
Sbjct: 253 FGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC----KA 308

Query: 133 KQFRLVCSMLDYMKRNN---KVFVPVDVL--LMILKQYTEKIKVKTQ-------PEINAL 180
              +    ++D M +      V+    V+  L  L +  E ++V  Q       P     
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  LCK   V+ A  + + + +K + P+  T+N L             M+  EEM  
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD FTYN  ID+ C    + EA ++ + M   G   S     TY  +I    + ++
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS---VITYNTLIDGFCKANK 485

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             E   +   M   G   +  TY  +++G+C + +VE+A + +++M  +G  PD  TYN 
Sbjct: 486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L   C   +  +A  +   M   GC P + TY  LIS   + G  + A +    +  +G
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                  Y  +I GLF   K  EA  L  E++ +    P
Sbjct: 606 INLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 122/288 (42%), Gaps = 24/288 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D  CK      AE I   ++ + V  N+ TYN L              Q +++MI 
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD +TYN+ +  FC+   + +AAD+ + M + G     P   TY  +I  L +  R
Sbjct: 534 EGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC---EPDIVTYGTLISGLCKAGR 590

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPDIVTYN 346
           +E    LL  +   G       Y  V++G+    K  EA     EM  +   PPD V+Y 
Sbjct: 591 VEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650

Query: 347 CFLKVLCDNKNGD--EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
              + LC N  G   EA+     ++E G  P   +  ML      L   +   +  + + 
Sbjct: 651 IVFRGLC-NGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVM 709

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
           ++  A+  +    M+ GL    K ++A   L  V++   + P R + S
Sbjct: 710 QK--ARFSEEEVSMVKGLLKIRKFQDALATLGGVLDS--RQPRRTYRS 753



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P+ + Y+E+L  +  +G  ++  K LE+M +        T+   ++     +  DE L +
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSV 140

Query: 365 YGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWH-EMDKRGCAQDVDTYCVMIDGL 422
              MI E G  P    YN ++++  + G      E  H +M   G   DV T+ V+I  L
Sbjct: 141 VDWMIDEFGLKPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKAL 199

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
               ++  A  +LE++ + GL    + F + +      GDL    ++ + M +F
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF 253


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 181/381 (47%), Gaps = 35/381 (9%)

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149
           R      +A +FF WAG QD Y H+  +YN ++DIL  + +  +  ++   +L      N
Sbjct: 2   RRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPN 61

Query: 150 KVFVPVDV-----------LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
            V   + +            L  L+   E       P++   N+L+  L K G  D A  
Sbjct: 62  LVTFKILIRGNCKAGQAMRALEFLRALDE---FSVAPDVYIFNVLIHGLFKDGNPDQAVK 118

Query: 199 ICKRVK-NKVKPNANTYN--ILGM----------QTLEEMIQMG--HAPDNFTYNTAIDT 243
           + + ++ ++VKP   TYN  I G+          + LEEMI+ G   APD  TYNT I+ 
Sbjct: 119 LFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINA 178

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           F +A  + EA    E M+  G    +P   T  I++  + ++  +EE   +L  M  +G 
Sbjct: 179 FYRASRIREACAFREKMKAAG---INPDVLTCNILVSGICKDGDVEEALEILDGMKLAGP 235

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +PDV TY  ++  +C+AGKV EA + L+ M      PD+VT+N  L   C       AL 
Sbjct: 236 VPDVITYNSIIHALCVAGKVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALE 292

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +   M      P V TY +L++    +G+   AF    E+ ++G   DV  Y  ++DGL 
Sbjct: 293 VLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLC 352

Query: 424 DCSKVEEACFLLEEVVNKGLK 444
              ++EEA  L++E+  +G +
Sbjct: 353 KSGEIEEAHKLVKEMSVRGCR 373



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 148/289 (51%), Gaps = 14/289 (4%)

Query: 165 YTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN------- 215
           + EK+K     P++   N+L+  +CK G V+ A  I   +K     P+  TYN       
Sbjct: 191 FREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALC 250

Query: 216 ILG--MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
           + G  ++  E +  M  +PD  T+NT +D FCKA M+  A ++ E M  +      P   
Sbjct: 251 VAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENIL---PDVI 307

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I++  L +  +++  F LL  ++  G +PDV  Y  +++G+C +G++EEA+K ++EM
Sbjct: 308 TYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM 367

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G    +V Y+  +   C   N  +A  +   M+ +   P + TYN+++    + G  
Sbjct: 368 SVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSI 427

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             A     ++  RG   DV TY  +IDGL   ++V EAC L +E+ ++G
Sbjct: 428 SKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRG 476



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 144/313 (46%), Gaps = 16/313 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++   N LLD  CK G++  A E + +  +  + P+  TY IL               
Sbjct: 268 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 327

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LEE+++ G+ PD   Y + +D  CK+  + EA  L + M  +G          Y+ ++ 
Sbjct: 328 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTG---VVMYSSLVS 384

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   + +   +L  M++   +P + TY  VL G+   G + +A   + ++  +GY P
Sbjct: 385 GYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVP 444

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTYN  +  LC      EA  L   M   GC+P+  T   ++     +G  D A+   
Sbjct: 445 DVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLV 504

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM ++  A +V  Y  +IDGL    ++++AC +L+ +  +G+ L    +   ++ +S  
Sbjct: 505 VEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHG 564

Query: 461 GDLGAIHKLSDHM 473
           G +     + D M
Sbjct: 565 GRVAEAMAMYDEM 577



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 21/274 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++ A   L+D LCK G ++ A  + K +  +  +     Y+ L              + 
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM+ +   P  FTYN  +    K   +++A  L   +  +G     P   TY  +I  
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV---PDVVTYNTLIDG 455

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + +R+ E   L   M + GC P+  T   V+ G+C  G+V++A+  + EM  K + P+
Sbjct: 456 LCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPN 515

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +  LC +   D+A  +   M   G       Y  LI      G    A   + 
Sbjct: 516 VVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYD 575

Query: 402 EMDKRGCAQDVDTY-----CVMIDGLFDCSKVEE 430
           EM  RG   D  T        M + +F+ + +EE
Sbjct: 576 EMVARGFLPDGSTSKTLEEAAMSNSVFEWTNLEE 609



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A +F +  G + GY  D+ +YN  L +L  + +     ++Y  ++  GC P++ T+ +LI
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILI 69

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               + G+   A E    +D+   A DV  + V+I GLF     ++A  L E + +  +K
Sbjct: 70  RGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVK 129

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +++ +  L   G+L    +L + M
Sbjct: 130 PEIVTYNTVISGLCKSGNLEKARELLEEM 158


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 183/419 (43%), Gaps = 34/419 (8%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL-------SSTK 129
           +P  T S V  L  F  + + A  FF W   +  + H   +Y+ M++IL        + K
Sbjct: 63  LPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEK 122

Query: 130 YKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK 189
            +    +  CS+ D +      FV     L + ++     + K +P +   N +L +L K
Sbjct: 123 IRISMIKSCCSIEDVL------FV-----LEVFRKMNADGEFKFKPTLRCYNTILMSLSK 171

Query: 190 CGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFT 236
             L+D  +T+  + + N++ PN  T+N +                  +++Q G  PD FT
Sbjct: 172 FLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFT 231

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y + I   C+ + V  A ++F  M  KG         +Y  +I  L +  R+ E   L  
Sbjct: 232 YTSLILGHCRNKGVDNAYEVFLIMPQKGC---QRNEVSYTNLIHGLCEAGRINEALKLFA 288

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M    C P V TY  ++  +  +G+  EA     EM  KG  P++ TY   +  LC   
Sbjct: 289 DMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKEN 348

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             DEA ++   M E G  PSV TYN LI  Y + G  D AFE    M+   C  +  TY 
Sbjct: 349 KMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYN 408

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +I GL    KV +A  LL +++ + L      ++S +     + DL + ++L   M +
Sbjct: 409 ELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE 467



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 51/318 (16%)

Query: 175 PEINALNLLLDALCKCGLVD--------------------YAETIC-------------- 200
           P +   N L+D  CK G++D                    Y E IC              
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426

Query: 201 --KRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             K ++ K+ P+  TYN L              + L  M + G  PD +TY+  IDT CK
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              V EA  LF+ ++ KG   +      Y  +I    +  +++  +SLL  M+N  CLP+
Sbjct: 487 EGRVEEAGTLFDSVKAKGVKANEVI---YTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             TY  ++EG+C   K++EA   + +M   G  P +VTY   +  +  +   D AL+++ 
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+ +G  P V TY   +  YF  G  +   +   +M++ G   D+ TY V+IDG     
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663

Query: 427 KVEEACFLLEEVVNKGLK 444
               A   L+ +V+ G K
Sbjct: 664 LTHRAFDFLKCMVDTGCK 681



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 17/332 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK + +  +    P +    +L+ AL   G    A  +   +K K  +PN +TY +L   
Sbjct: 284 LKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDG 343

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + L EM + G  P   TYN  ID +CK  M+ +A ++ + M    S   
Sbjct: 344 LCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME---SNSC 400

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P  +TY  +I  L +  ++ +  +LL  M+     P + TY  ++ G C    +E AY+
Sbjct: 401 GPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYR 460

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  M   G  PD  TY+ F+  LC     +EA  L+  +   G   +   Y  LI  Y 
Sbjct: 461 LLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC 520

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+ D A+     M    C  +  TY V+I+GL    K++EA  L+ +++  G+K    
Sbjct: 521 KVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVV 580

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKF-YNP 479
            +   + ++   G      K+ +HM    Y P
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 140/330 (42%), Gaps = 34/330 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    ++ +D LCK G V+ A T+   VK K VK N   Y  L                
Sbjct: 472 PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSL 531

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE M+     P+++TYN  I+  CK + + EA+ L   M T G     PT  TY I+I  
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV---KPTVVTYTILIGE 588

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           ++++   +    +  HM++ G  PDV TY   L      G +EE    + +M  +G  PD
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI----------SMYFELG 391
           +VTY   +           A      M++ GC PS+   ++LI              E+G
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 392 --------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                   E + A + + +M + GC  DV  Y  +I G     ++EEA  L+  +  +G+
Sbjct: 709 IDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGM 768

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                 ++S L     +G      +L D M
Sbjct: 769 SPSEDIYNSLLDCCCKLGVYAEAVRLVDAM 798



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 63/331 (19%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQT 221
           P     N+L++ LCK   +  A + + K +   VKP   TY IL             ++ 
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL------------------------- 256
              M+ +G+ PD  TY   +  +    M+ E  D+                         
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 257 -------FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG------------- 296
                  F+F++    T   P+    +I+I  L   +RM+E  S +G             
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIA 721

Query: 297 -----HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
                 M+  GC  DVS Y  ++ G C   ++EEA   +  M  +G  P    YN  L  
Sbjct: 722 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDC 781

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C      EA+RL   M+E G  P +++Y +L+   +  G  + A   +H +   G   D
Sbjct: 782 CCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYD 841

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              + V+IDGL     V+E   L++ +  KG
Sbjct: 842 EVAWKVLIDGLLKRDLVDECSELIDIMEEKG 872


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 157/325 (48%), Gaps = 17/325 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL--GMQT 221
           + E I+    P+      L+  LC+ G V D +E   +  K+  +PN   YN+L  G+ +
Sbjct: 138 FDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCS 197

Query: 222 ----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                       EM     +PD  TYNT +D  CKAR V E   LFE MR  G     P 
Sbjct: 198 SGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYV---PN 254

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T++ +I  L +   +E+   + G M+ +GC P+  TY  ++ G+C A KV +A +  E
Sbjct: 255 VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFE 314

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE-VGCWPSVQTYNMLISMYFEL 390
           +M     PPD V YN  +   C   + DEA +LY  M    G  P++ T+N LI  + +L
Sbjct: 315 KMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKL 374

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+   A E   EM  +G A D  TY ++I GL   +K++EA  + +++  K   L     
Sbjct: 375 GKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSC 434

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRK 475
            S++  L   G++   + + +  RK
Sbjct: 435 VSFVGGLCKTGNIDQAYAVFEATRK 459



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 16/287 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           E +     P++ A N ++    +   ++ A  + +  V++  KP+  +Y+IL        
Sbjct: 35  EMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIG 94

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L EM+  G  P    Y++ +    KAR V  A+ LF+ M   G     P   
Sbjct: 95  KLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGH---HPDRL 151

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  +I+ L Q  ++++       M   GC P+V  Y  +L G+C +G++E+A     EM
Sbjct: 152 MFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEM 211

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    PD+VTYN  L  +C  +  +E  +L+  M   G  P+V T++ LI      GE 
Sbjct: 212 KSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGEL 271

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           + A E +  M + GC  +  TY  +I GL    KV +A  L E++  
Sbjct: 272 EKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQ 318



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 120/280 (42%), Gaps = 25/280 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-----RVKNKVKPNANTYNIL------------ 217
           P++   N LLDA+CK   V   E  CK     R    V PN  T++ L            
Sbjct: 218 PDVVTYNTLLDAVCKARRV---EEGCKLFEAMRAAGYV-PNVITFSTLIHGLCRTGELEK 273

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++    M++ G  P+ +TY T I   C+A  V +A +LFE M         P A  Y  
Sbjct: 274 ALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMT---QACIPPDAVAYNS 330

Query: 278 MIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +I    +   M+E   L   M   +G  P + T+  +++G C  GK+  A + + EMG K
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 390

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G   D  TY   +  L      DEAL +Y +M E        +    +    + G  D A
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +  +    K G   + +T+ ++ + L    +VE+A  L+E
Sbjct: 451 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 35/200 (17%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ +I +LV+  + EE + +L  M+ +GC PDV  +  V++G   +  +E+A +  + M
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS-------- 385
              GY PD V+Y+  +  L      DE+L++   M+  G  PS+Q Y+ L+         
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 386 --------------------MYFEL-------GEPDGAFETWHEMDKRGCAQDVDTYCVM 418
                               M++EL       G+   A E + +M K GC  +V  Y V+
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 419 IDGLFDCSKVEEACFLLEEV 438
           + GL    ++E+A  L  E+
Sbjct: 192 LHGLCSSGQLEQANTLFAEM 211



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 70/137 (51%)

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V TY  +++ +    K EE+YK LEEM   G  PD+  +N  ++    + N ++A  +Y
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M+E G  P   +Y++LI    ++G+ D + +   EM  RG    +  Y  ++  L   
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128

Query: 426 SKVEEACFLLEEVVNKG 442
            +V+ A  L +E++  G
Sbjct: 129 RRVDHASSLFDEMIRGG 145



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 140/369 (37%), Gaps = 55/369 (14%)

Query: 22  RTKSLQSYIGKVPSLV--------CKVFDE--SSDSVSDVAKLYEAII---------DNS 62
           +T S+Q+Y   V +L           +FDE        D    YE I+         D S
Sbjct: 111 QTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDAS 170

Query: 63  NAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMI 122
             +  M K      VP+    + G+    Q E+     F     H  + + + + YN ++
Sbjct: 171 ERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTL-FAEMKSH--SCSPDVVTYNTLL 227

Query: 123 DILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI------------LKQYTEKIK 170
           D +     KA++    C + + M+    V   +    +I            L+ +   ++
Sbjct: 228 DAVC----KARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 283

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------GMQT 221
              +P       L+  LC+   V  A  + +++    + P+A  YN L         M  
Sbjct: 284 AGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 343

Query: 222 LEEMIQ-----MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
            E++ +      G  P   T+NT ID FCK   +  A +L   M TKG    S T   Y 
Sbjct: 344 AEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCT---YR 400

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           I+I  L +  +++E   +   M     L D  +    + G+C  G +++AY   E     
Sbjct: 401 ILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKS 460

Query: 337 GYPPDIVTY 345
           G  P+  T+
Sbjct: 461 GAVPNPETF 469



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M +K    ++ TY+  +K L      +E+ ++   M+  GC P V  +N ++  +     
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            + A E +  M + G   D  +Y ++I GL    K++E+  +L E+V +G     + + S
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 453 YLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
            +  L+    +     L D M R  ++P
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHP 148


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 145/293 (49%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           K Y E +++   P++  LN  +D + K G ++    + + +KN    P+A +Y IL    
Sbjct: 535 KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     +    M + G   D   YNT ID FCK+  V +A  L E M+TKG     
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH---E 651

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  
Sbjct: 652 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLI 711

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +EE+  KG  P++ T+NC L  L   +   EAL  +  M ++ C P+  TY++LI    +
Sbjct: 712 MEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCK 771

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G   +V TY  MI GL     + EA  L E+   KG
Sbjct: 772 IRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 193/441 (43%), Gaps = 34/441 (7%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           I++      ++E  L  L +    + V+GVL+R + +   A  +F WA    + AH   A
Sbjct: 74  ILETGPWGSSVENRLAELDLNPNPELVIGVLRRLK-DVNNAVNYFRWAERLTDRAHCREA 132

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMK-----RNNKVFVPVDVLLMILKQYTEKI--- 169
           YN ++ +++ T    ++F  +  +L+ M       +N   + + +  +  ++  E     
Sbjct: 133 YNSLLMVMART----RKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFI 188

Query: 170 ----KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------- 217
               K+K +P  +A   L+ AL      D   T+ ++++      N + +  L       
Sbjct: 189 QTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFARE 248

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +  L+EM      PD   YN  ID F KA  V  A   F  M+  G  +     
Sbjct: 249 GRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDV-- 306

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  MI  L + DR+ E   L  HM  +  +P    Y  ++ G  +AGK E+AY  LE 
Sbjct: 307 -TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
              KG  P +V+YNC L  L      DEAL+ +  M +    P++ TYN++I M  + G+
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGK 424

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            + A      M   G   +V T  +M+D L    ++++AC + E + +K  +     + S
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCS 484

Query: 453 YLMQLSVIGDLGAIHKLSDHM 473
            +  L   G +   +KL + M
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQM 505



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 130/280 (46%), Gaps = 15/280 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + + N +L  L + G VD A    + +K    PN +TYNI+             +   
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVR 432

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M   G  P+  T N  +D  CKA+ + +A  +FE +  K      P A TY  +I  L
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK---TCRPDAVTYCSLIEGL 489

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++ R++E + L   M+++  +P+   Y  ++      G+ E+ +K   EM   G  PD+
Sbjct: 490 GRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDL 549

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +  N ++  +      ++   L+  +  +G  P  ++Y +LI    + G    A+E ++ 
Sbjct: 550 LLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYT 609

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           M ++GC  D   Y  +IDG     KV +A  LLEE+  KG
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKG 649



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 152/332 (45%), Gaps = 18/332 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK++ E++K    P ++  N+++D LCK G ++ A  +   +K+  + PN  T NI+   
Sbjct: 395 LKKF-EEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDR 453

Query: 218 --GMQTLEEMIQMGHA-------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
               Q L++   +          PD  TY + I+   +   V EA  L+E M        
Sbjct: 454 LCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQI-- 511

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P A  Y  +I    +  R E+   +   M+  GC PD+      ++ +  AG++E+   
Sbjct: 512 -PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRA 570

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +E+ N G+ PD  +Y   +  L       EA  L+  M E GC    + YN +I  + 
Sbjct: 571 LFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC 630

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G+ + A++   EM  +G    V TY  +IDGL    +++EA  L EE  +KG++L   
Sbjct: 631 KSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVV 690

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDH-MRKFYNP 479
            + S +     +G +   + + +  M+K   P
Sbjct: 691 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 722



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 105/257 (40%), Gaps = 9/257 (3%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q LEEM   G  P N T    + +F K+R + EA   F F++T       P    Y  +I
Sbjct: 151 QILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA---FTFIQTMRKLKFRPAFSAYTNLI 207

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            AL  +   +   +L   M   G   +V  +  ++      G+V+ A   L+EM +    
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+V YN  +         D A + +  M   G      TY  +I +  +    + A E 
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           +  MD+         Y  MI G     K E+A  LLE    KG  +P     SY   LS 
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGC-IP--SVVSYNCILSC 384

Query: 460 IGDLGAIHKLSDHMRKF 476
           +G  G   ++ + ++KF
Sbjct: 385 LGRKG---QVDEALKKF 398



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 5/241 (2%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            YN+ +    + R       + E M   G     P+  T   ++++ +++ ++ E F+ +
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGF---GPSNNTCIEIVLSFIKSRKLREAFTFI 188

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M      P  S Y  ++  +  +   +      ++M   GY  ++  +   ++V    
Sbjct: 189 QTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFARE 248

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              D AL L   M      P V  YN+ I  + + G+ D A++ +HEM   G   D  TY
Sbjct: 249 GRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTY 308

Query: 416 CVMIDGLFDCSKVEEACFLLEEV-VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             MI  L    ++ EA  L E +  NK +   Y  +++ +M   + G     + L +  R
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAY-AYNTMIMGYGMAGKFEDAYSLLERQR 367

Query: 475 K 475
           +
Sbjct: 368 R 368


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 151/293 (51%), Gaps = 18/293 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNILGMQTL- 222
           + + ++    P++   N+L+D  CK     D A+ + + VK   +PN  TYN L M +L 
Sbjct: 294 FNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTL-MDSLV 352

Query: 223 ------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                       + M++    P +FT+N  ID FCK   +  A +LF+ M  +G     P
Sbjct: 353 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCL---P 409

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY IMI    + +R+++   LL  M  +GC PDV TY  ++ G+C A +V+EAY+  
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 469

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           E + N GY  D+VT +  +  LC ++  D+A +L   M   G  P V  Y +LI  + + 
Sbjct: 470 EVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKA 529

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + D +   + EM  +GC   V TY ++ID L   ++V + C LL+ ++ +G+
Sbjct: 530 DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 582



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 176/415 (42%), Gaps = 26/415 (6%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           +  AK +  ++D+S  ++   + L   G  L    V  VLQ+    +K A +FF W   Q
Sbjct: 67  AQAAKEFLRVLDSSEDFELASRRLCEFGGYLVPSVVGRVLQQLDDLDK-AVKFFDWCTGQ 125

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRL-------VCS--MLDYMKRNNKVFVPVDVLL 159
             Y H     N ++      K   + + L       +CS   + Y    N  F       
Sbjct: 126 PGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLING-FCKARDFQ 184

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
              +   E  K    P     N ++  LC  G VD A    + ++    P+  TY IL  
Sbjct: 185 QAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVD 244

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                         LE+MI+ G AP+  TYNT I+ FCK   + EA  LF  M       
Sbjct: 245 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS--- 301

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            SP   TY I+I    + +R ++   LL  M+  GC P+  TY  +++ +  +GK  +A+
Sbjct: 302 CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAF 361

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              + M  +   P   T+N  + + C     D A  L+  M + GC P + TYN++IS  
Sbjct: 362 NLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGA 421

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
                 D A +    M + GC  DV TY  ++ GL   S+V+EA  + E + N G
Sbjct: 422 CRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGG 476



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 52/348 (14%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++D + ++ K     ++  M+L++         +P     NL++D  CK G +D A  +
Sbjct: 346 TLMDSLVKSGKYIDAFNLAQMMLRR-------DCKPSHFTFNLMIDMFCKVGQLDLAYEL 398

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
            + + ++   P+  TYNI+              Q LE M + G  PD  TYN+ +   CK
Sbjct: 399 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 458

Query: 247 ARMVTEAADLFEFMRTKG--------STI------------------------SSPTAKT 274
           A  V EA +++E +R  G        ST+                        S+P    
Sbjct: 459 ASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVA 518

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y I+I    + D++++  +    M++ GC+P V TY  V++ +C + +V +    L+ M 
Sbjct: 519 YTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTML 578

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            +G  PD + Y   +  LC + + DEA  LY  M + GC P+V TYN+L+    ++   D
Sbjct: 579 ERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLD 638

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            A      M+  GC  D  TY  + DG +  ++ ++A  L + + ++G
Sbjct: 639 EAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRG 686



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 19/301 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNA 211
           +D    +L++ TE       P++   N ++  LCK   VD A  + + ++N    +    
Sbjct: 427 IDDARQLLERMTE---AGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVT 483

Query: 212 NTYNILGM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
            +  I G+          + L EM + G APD   Y   I  FCKA  + ++   F  M 
Sbjct: 484 CSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEML 543

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            KG     PT  TY+I+I  L ++ R+ +   LL  M+  G  PD   Y  V++G+C + 
Sbjct: 544 DKGCV---PTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSD 600

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
             +EAY+  + M   G  P +VTYN  +  LC     DEA+ L   M   GC P   TYN
Sbjct: 601 SYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYN 660

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +   +++  E D AF  +  M  RGC+     Y +++  L    K+++A  + EE +  
Sbjct: 661 SVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEA 720

Query: 442 G 442
           G
Sbjct: 721 G 721



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +PD+ TY+T I+ FCKAR   +A  L + M  +G     P    Y  +I  L  N R++ 
Sbjct: 164 SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIV---PHNAVYNTIIKGLCDNGRVD- 219

Query: 291 CFSLLGHM--INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
             S L H   +   C P V TY  +++ +C + ++ +A   LE+M   G  P++VTYN  
Sbjct: 220 --SALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTL 277

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C   N DEA+ L+ +M+E  C P V TYN+LI  Y +   P    +   EM K GC
Sbjct: 278 INGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC 337

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             +  TY  ++D L    K  +A  L + ++ +  K  +  F+  +     +G L   ++
Sbjct: 338 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 397

Query: 469 L 469
           L
Sbjct: 398 L 398



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 4/235 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+    FT N  +  F + +   EA DLF+  R     + SP + TY+ +I    +  
Sbjct: 125 QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCG---LCSPDSITYSTLINGFCKAR 181

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
             ++ + LL  M   G +P  + Y  +++G+C  G+V+ A     +M  +   P ++TY 
Sbjct: 182 DFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRNCAPSVITYT 240

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC +    +A  +   MIE GC P+V TYN LI+ + +LG  D A   +++M + 
Sbjct: 241 ILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLEN 300

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            C+ DV TY ++IDG     + ++   LL+E+V  G +  +  +++ +  L   G
Sbjct: 301 SCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 355


>gi|116791998|gb|ABK26193.1| unknown [Picea sitchensis]
          Length = 262

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 7/253 (2%)

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           K R   EA  LF  M+  G     P +K+Y I+I AL +  +MEE       M   G   
Sbjct: 7   KGRKKDEALKLFGLMKINGPY---PDSKSYTIVIRALSKLQKMEEASKFFAEMQEHGSPL 63

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           D + Y  ++ G     K+++AY  L+EM  KG P D  TYN  +KV+      DEA +L+
Sbjct: 64  DAAVYTCMITGYGNTKKLDKAYVLLQEMKEKGIPHDCRTYNALIKVMMVLHKPDEATKLF 123

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            +M + G  P++ TYNML+ +YF    P+  F  W +M + GC  DV++Y V I GL   
Sbjct: 124 EKMSQCGFQPTIHTYNMLMKLYFRARNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIRE 183

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF----YNPVI 481
            + EEAC  +E +++KG+K P   ++ +L   S  G      +L+  M+       + V 
Sbjct: 184 GRSEEACAYIESMIDKGMKAPRFDYNKFLADFSRAGRPDIFEELAAKMKHAGKLDISDVF 243

Query: 482 ARRLALNQKRVRI 494
            RR    + RV+I
Sbjct: 244 LRRSQKMKTRVKI 256



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM + G   D  TYN  I          EA  LFE M   G     PT  TY +++  
Sbjct: 88  LQEMKEKGIPHDCRTYNALIKVMMVLHKPDEATKLFEKMSQCG---FQPTIHTYNMLMKL 144

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +    E  F++   M  +GC PDV++Y   + G+   G+ EEA  ++E M +KG    
Sbjct: 145 YFRARNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACAYIESMIDKGMKAP 204

Query: 342 IVTYNCFL 349
              YN FL
Sbjct: 205 RFDYNKFL 212



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L  L   +  DEAL+L+G M   G +P  ++Y ++I    +L + + A + + EM + G 
Sbjct: 2   LGGLFKGRKKDEALKLFGLMKINGPYPDSKSYTIVIRALSKLQKMEEASKFFAEMQEHGS 61

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D   Y  MI G  +  K+++A  LL+E+  KG+    R +++ +  + V+       K
Sbjct: 62  PLDAAVYTCMITGYGNTKKLDKAYVLLQEMKEKGIPHDCRTYNALIKVMMVLHKPDEATK 121

Query: 469 LSDHMRK-FYNPVI 481
           L + M +  + P I
Sbjct: 122 LFEKMSQCGFQPTI 135



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +L G+    K +EA K    M   G  PD  +Y   ++ L   +  +EA + +  M E G
Sbjct: 1   MLGGLFKGRKKDEALKLFGLMKINGPYPDSKSYTIVIRALSKLQKMEEASKFFAEMQEHG 60

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
                  Y  +I+ Y    + D A+    EM ++G   D  TY  +I  +    K +EA 
Sbjct: 61  SPLDAAVYTCMITGYGNTKKLDKAYVLLQEMKEKGIPHDCRTYNALIKVMMVLHKPDEAT 120

Query: 433 FLLEEVVNKGLK 444
            L E++   G +
Sbjct: 121 KLFEKMSQCGFQ 132


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 145/293 (49%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           K Y E +++   P++  LN  +D + K G ++    + + +KN    P+A +Y IL    
Sbjct: 535 KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     +    M + G   D   YNT ID FCK+  V +A  L E M+TKG     
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH---E 651

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  
Sbjct: 652 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLI 711

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +EE+  KG  P++ T+NC L  L   +   EAL  +  M ++ C P+  TY++LI    +
Sbjct: 712 MEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCK 771

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G   +V TY  MI GL     + EA  L E+   KG
Sbjct: 772 IRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 188/444 (42%), Gaps = 71/444 (15%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           I++      ++E  L  L +    + V+GVL+R + +   A  +F WA    + AH   A
Sbjct: 74  ILETGPWGSSVENRLAELDLNPNPELVIGVLRRLK-DVNNAVNYFRWAERLTDRAHCREA 132

Query: 118 YNLMIDILSSTK-------------------------------YKAKQFRLVCSMLDYMK 146
           YN ++ +++ T+                                K+++ R   + +  M+
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 147 RNNKVFVPV-----------------DVLLMILKQYTEKIKVKTQPEINALNLLLDALCK 189
           +    F P                  D +L + +Q  E   +     ++    L+    +
Sbjct: 193 KLK--FRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQE---LGYAVNVHLFTTLIRVFAR 247

Query: 190 CGLVDYAETICKRVK-NKVKPNANTYNI------------LGMQTLEEMIQMGHAPDNFT 236
            G VD A ++   +K N ++P+   YN+            +  +   EM   G   D+ T
Sbjct: 248 EGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVT 307

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y + I   CKA  + EA +LFE M         P A  Y  MI+      + E+ +SLL 
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQV---PCAYAYNTMIMGYGMAGKFEDAYSLLE 364

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
                GC+P V +Y  +L  +   G+V+EA K  EEM  K   P++ TYN  + +LC   
Sbjct: 365 RQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAG 423

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             + AL +   M + G +P+V T N+++    +    D A   +  +D + C  D  TYC
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 417 VMIDGLFDCSKVEEACFLLEEVVN 440
            +I+GL    +V+EA  L E++++
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLD 507



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 130/280 (46%), Gaps = 15/280 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + + N +L  L + G VD A    + +K    PN +TYNI+             +   
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVR 432

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M   G  P+  T N  +D  CKA+ + +A  +FE +  K      P A TY  +I  L
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK---TCRPDAVTYCSLIEGL 489

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++ R++E + L   M+++  +P+   Y  ++      G+ E+ +K   EM   G  PD+
Sbjct: 490 GRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDL 549

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +  N ++  +      ++   L+  +  +G  P  ++Y +LI    + G    A+E ++ 
Sbjct: 550 LLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYT 609

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           M ++GC  D   Y  +IDG     KV +A  LLEE+  KG
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKG 649



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 145/315 (46%), Gaps = 17/315 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK++ E++K    P ++  N+++D LCK G ++ A  +   +K+  + PN  T NI+   
Sbjct: 395 LKKF-EEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDR 453

Query: 218 --GMQTLEEMIQMGHA-------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
               Q L++   +          PD  TY + I+   +   V EA  L+E M        
Sbjct: 454 LCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQI-- 511

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P A  Y  +I    +  R E+   +   M+  GC PD+      ++ +  AG++E+   
Sbjct: 512 -PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRA 570

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +E+ N G+ PD  +Y   +  L       EA  L+  M E GC    + YN +I  + 
Sbjct: 571 LFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC 630

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G+ + A++   EM  +G    V TY  +IDGL    +++EA  L EE  +KG++L   
Sbjct: 631 KSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVV 690

Query: 449 KFDSYLMQLSVIGDL 463
            + S +     +G +
Sbjct: 691 IYSSLIDGFGKVGRI 705



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 110/294 (37%), Gaps = 74/294 (25%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q LEEM   G  P N T    + +F K+R + EA   F F++T       P    Y  +I
Sbjct: 151 QILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA---FTFIQTMRKLKFRPAFSAYTNLI 207

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            AL  +   +   +L   M   G   +V  +  ++      G+V+ A   L+EM +    
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 340 PDIVTYN----CFLK-------------------------------VLCDNKNGDEALRL 364
           PD+V YN    CF K                               VLC     +EA+ L
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 365 ----------------------YG-------------RMIEVGCWPSVQTYNMLISMYFE 389
                                 YG             R    GC PSV +YN ++S    
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGR 387

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G+ D A + + EM K+    ++ TY +MID L    K+E A  + + + + GL
Sbjct: 388 KGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGL 440



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 5/241 (2%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            YN+ +    + R       + E M   G     P+  T   ++++ +++ ++ E F+ +
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGF---GPSNNTCIEIVLSFIKSRKLREAFTFI 188

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M      P  S Y  ++  +  +   +      ++M   GY  ++  +   ++V    
Sbjct: 189 QTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFARE 248

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              D AL L   M      P V  YN+ I  + + G+ D A++ +HEM   G   D  TY
Sbjct: 249 GRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTY 308

Query: 416 CVMIDGLFDCSKVEEACFLLEEV-VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             MI  L    ++ EA  L E +  NK +   Y  +++ +M   + G     + L +  R
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAY-AYNTMIMGYGMAGKFEDAYSLLERQR 367

Query: 475 K 475
           +
Sbjct: 368 R 368


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 194/432 (44%), Gaps = 40/432 (9%)

Query: 49  SDVAKLYEAIIDNSNA-YDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA-G 106
           +D A + + I+ + N  + + +  L +   P T + V  VL+R       A +FF +   
Sbjct: 23  ADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDN 82

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           H   Y H+  +++L IDI +        + L+  M     R+ ++        ++ ++Y 
Sbjct: 83  HHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRM-----RSLRIGPSPKTFAIVAERYA 137

Query: 167 EKIKVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
              K                  ++ + N +LD LCK   V+ A  + + ++ +   +  T
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 197

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN++             ++ L+EM++ G  P+  TYNT +  F +A  +  A + F  M+
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMK 257

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +   I      TY  ++        ++   ++   MI  G LP V+TY  +++ +C   
Sbjct: 258 KRDCEID---VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKD 314

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            VE A    EEM  +GY P++ TYN  ++ L           L  RM   GC P+ QTYN
Sbjct: 315 NVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYN 374

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEV 438
           M+I  Y E  E + A   + +M    C  ++DTY ++I G+F   + E+   A  LL E+
Sbjct: 375 MMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEM 434

Query: 439 VNKGLKLPYRKF 450
           V +G  +P RKF
Sbjct: 435 VERGF-IP-RKF 444



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 1/182 (0%)

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           +SL+  M +    P   T+  V E    AGK ++A K    M   G   D+ ++N  L V
Sbjct: 111 WSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDV 170

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC +K  ++A  L+ R +         TYN++++ +  +     A E   EM +RG   +
Sbjct: 171 LCKSKRVEKAYELF-RALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPN 229

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           + TY  M+ G F   ++  A     E+  +  ++    + + +    V G++     + D
Sbjct: 230 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD 289

Query: 472 HM 473
            M
Sbjct: 290 EM 291


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 151/293 (51%), Gaps = 18/293 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNILGMQTL- 222
           + + ++    P++   N+L+D  CK     D A+ + + VK   +PN  TYN L M +L 
Sbjct: 160 FNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTL-MDSLV 218

Query: 223 ------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                       + M++    P +FT+N  ID FCK   +  A +LF+ M  +G     P
Sbjct: 219 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCL---P 275

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY IMI    + +R+++   LL  M  +GC PDV TY  ++ G+C A +V+EAY+  
Sbjct: 276 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 335

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           E + N GY  D+VT +  +  LC ++  D+A +L   M   G  P V  Y +LI  + + 
Sbjct: 336 EVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKA 395

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + D +   + EM  +GC   V TY ++ID L   ++V + C LL+ ++ +G+
Sbjct: 396 DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 15/280 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P     N ++  LC  G VD A    + ++    P+  TY IL                L
Sbjct: 66  PHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLIL 125

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+MI+ G AP+  TYNT I+ FCK   + EA  LF  M        SP   TY I+I   
Sbjct: 126 EDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS---CSPDVFTYNILIDGY 182

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            + +R ++   LL  M+  GC P+  TY  +++ +  +GK  +A+   + M  +   P  
Sbjct: 183 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSH 242

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T+N  + + C     D A  L+  M + GC P + TYN++IS        D A +    
Sbjct: 243 FTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLER 302

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           M + GC  DV TY  ++ GL   S+V+EA  + E + N G
Sbjct: 303 MTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGG 342



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +PD+ TY+T I+ FCKAR   +A  L + M  +G     P    Y  +I  L  N R++ 
Sbjct: 30  SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIV---PHNAVYNTIIKGLCDNGRVD- 85

Query: 291 CFSLLGHM--INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
             S L H   +   C P V TY  +++ +C + ++ +A   LE+M   G  P++VTYN  
Sbjct: 86  --SALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTL 143

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C   N DEA+ L+ +M+E  C P V TYN+LI  Y +   P    +   EM K GC
Sbjct: 144 INGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC 203

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             +  TY  ++D L    K  +A  L + ++ +  K  +  F+  +     +G L   ++
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 263

Query: 469 L 469
           L
Sbjct: 264 L 264



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 39/256 (15%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM + G  P N  YNT I   C    V  A   +  M+       +P+  TY I++ A
Sbjct: 56  LDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH----CAPSVITYTILVDA 111

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+ +   +L  MI +GC P+V TY  ++ G C  G ++EA     +M      PD
Sbjct: 112 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 171

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY--------------------- 380
           + TYN  +   C  +   +  +L   M++ GC P+  TY                     
Sbjct: 172 VFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQ 231

Query: 381 --------------NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
                         N++I M+ ++G+ D A+E +  M  RGC  D+ TY +MI G    +
Sbjct: 232 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 291

Query: 427 KVEEACFLLEEVVNKG 442
           ++++A  LLE +   G
Sbjct: 292 RIDDARQLLERMTEAG 307



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N  +  F + +   EA DLF   +     + SP + TY+ +I    +    ++ + LL  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLF---KNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDE 58

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   G +P  + Y  +++G+C  G+V+ A     +M  +   P ++TY   +  LC +  
Sbjct: 59  MEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSAR 117

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             +A  +   MIE GC P+V TYN LI+ + +LG  D A   +++M +  C+ DV TY +
Sbjct: 118 ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNI 177

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +IDG     + ++   LL+E+V  G +  +  +++ +  L
Sbjct: 178 LIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSL 217


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 189/409 (46%), Gaps = 38/409 (9%)

Query: 51  VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
           V ++ + + +  ++   ++  L+S GV  +++ VV VL R +   + AF FF+WA  Q  
Sbjct: 83  VRRIVDILQEPGSSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPG 142

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK--RNNKVFVPVDVLLMILKQYTEK 168
           YAH   AY+ MI IL     K ++F    +++D M+  R     V    L +++++Y   
Sbjct: 143 YAHSLRAYHSMISILG----KMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAV 198

Query: 169 IKV-------------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
             V             K    I     LL ALC+   V  AE +    +N    +  ++N
Sbjct: 199 HDVGKAINTFYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLLFCNRNVFPFDTKSFN 258

Query: 216 IL---------GMQTLE----EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           I+          M+  E    EM   G   D  +Y++ I  + K   + +   LF  M+ 
Sbjct: 259 IILNGWCNVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMK- 317

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
                 +P  K Y  ++ AL +   ++E  +L+  M   G  PD  TY  +++ +  A K
Sbjct: 318 --EMEIAPDRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARK 375

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           + EA +  +EM  +G  P I TY+ F ++L   K+G+E   L  +M E GC P   TY M
Sbjct: 376 INEAKEVFDEMLQRGLSPTIRTYHAFFRIL---KSGEEVFMLLEKMKETGCHPDKDTYIM 432

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           LI  +    + D  F+ W EM + G   D  +Y V+I GLF   K+EEA
Sbjct: 433 LIRRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEA 481



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 28/223 (12%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           +LK + +  +++  P+    N ++ AL K   V  A  + K ++ K              
Sbjct: 309 VLKLFNQMKEMEIAPDRKVYNAVVHALAKASFVKEALNLMKAMEGK-------------- 354

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                   G APD+ TYN+ I    +AR + EA ++F+ M  +G    SPT +TY     
Sbjct: 355 --------GIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGL---SPTIRTYHAFFR 403

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L      EE F LL  M  +GC PD  TY  ++   C   +++  +K   EM   G  P
Sbjct: 404 ILKSG---EEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGP 460

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           D  +Y   +  L  N   +EA + Y  M E    P  +T +ML
Sbjct: 461 DRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPKTEDML 503



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 129/317 (40%), Gaps = 49/317 (15%)

Query: 178 NALNLLLDALCKCGLVDYAETICK---RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           ++++L+   L  CG+   +E + +   RV+N  +  A T+ +   +      Q G+A   
Sbjct: 95  SSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEA-AFTFFLWAAK------QPGYAHSL 147

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI--------------- 279
             Y++ I    K R    A  L + MR   +  S  T  T +IMI               
Sbjct: 148 RAYHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGKAINT 207

Query: 280 --------------------VALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMC 318
                                AL +   +++   LL    N    P D  ++  +L G C
Sbjct: 208 FYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLL--FCNRNVFPFDTKSFNIILNGWC 265

Query: 319 -LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
            + G + EA +F  EM N+G   D+V+Y+  +       N ++ L+L+ +M E+   P  
Sbjct: 266 NVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDR 325

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
           + YN ++    +      A      M+ +G A D  TY  +I  L    K+ EA  + +E
Sbjct: 326 KVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDE 385

Query: 438 VVNKGLKLPYRKFDSYL 454
           ++ +GL    R + ++ 
Sbjct: 386 MLQRGLSPTIRTYHAFF 402


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 175/373 (46%), Gaps = 48/373 (12%)

Query: 86  GVLQRFQFEEKIA-FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY 144
           G+    + +E +  F   +W+GH+ N     ++YN +I+ L                   
Sbjct: 175 GLCNEGKIKEAVGLFNEMVWSGHEPNV----ISYNTVINGLC------------------ 212

Query: 145 MKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRV 203
            K  N +        M ++ + +  + + +P +   N ++D+LCK  LV+ A E + + V
Sbjct: 213 -KNGNTI--------MAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMV 263

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
              + P+  TYN +              +  +EM+     PD  T+N  +D  CK  MV+
Sbjct: 264 DRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVS 323

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           EA  + E M  KG+    P A TY  ++     +++M+E   +LG MI  GC P++S+Y 
Sbjct: 324 EARCVSETMTEKGA---EPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYN 380

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++ G C + ++ EA + L EM  K   PD VTY+  ++ LC      EAL L+  M   
Sbjct: 381 ILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSS 440

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P +  Y++L+  + + G  D A +   EM +R    ++  Y ++I G+F   K+E A
Sbjct: 441 GLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVA 500

Query: 432 CFLLEEVVNKGLK 444
             L  ++   G++
Sbjct: 501 KELFSKLSADGIR 513



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 160/347 (46%), Gaps = 24/347 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTE 167
           + YN +ID L   +   +    +  M+D     + V        F  +  L    + + E
Sbjct: 237 VTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKE 296

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------- 217
            +     P+    N+L+D LCK G+V  A  + + +  K  +PNA TYN L         
Sbjct: 297 MVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQ 356

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               ++ L  MI  G AP+  +YN  I+ +CK++ + EA  L   M  K  T   P   T
Sbjct: 357 MDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLT---PDTVT 413

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y+ ++  L Q  R  E  +L   M +SG LPD+  Y  +L+G C  G ++EA K L+EM 
Sbjct: 414 YSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMH 473

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            +   P+I+ Y   ++ +      + A  L+ ++   G  P + TYN++I    + G  D
Sbjct: 474 ERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSD 533

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            A+E + +M+  G   D  +Y V+I G         A  L++E+V K
Sbjct: 534 EAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGK 580



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 151/320 (47%), Gaps = 25/320 (7%)

Query: 163 KQYTEKIKVKTQPE-------INALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTY 214
           KQY+  + +  Q +       + +LN+L++ LC+   VD+A ++  K  K  ++P+A T+
Sbjct: 110 KQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITF 169

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM-R 261
           N L             +    EM+  GH P+  +YNT I+  CK      A  +F  M +
Sbjct: 170 NTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQ 229

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +G     P   TY  +I +L ++  + E    L  M++ G  PDV TY  +L G C  G
Sbjct: 230 NRGK----PNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLG 285

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++ EA +  +EM  +   PD VT+N  +  LC      EA  +   M E G  P+  TYN
Sbjct: 286 QLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYN 345

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+  Y    + D A +    M  +GCA ++ +Y ++I+G     ++ EA  LL E+  K
Sbjct: 346 ALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEK 405

Query: 442 GLKLPYRKFDSYLMQLSVIG 461
            L      + + +  L  +G
Sbjct: 406 NLTPDTVTYSTLMQGLCQVG 425



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 18/226 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTL----------- 222
           P +++ N+L++  CK   ++ A+ +   +  K + P+  TY+ L MQ L           
Sbjct: 374 PNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL-MQGLCQVGRPREALN 432

Query: 223 --EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM   G  PD   Y+  +D FCK   + EA  L + M  +      P    Y I+I 
Sbjct: 433 LFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI---KPNIILYTILIR 489

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            +    ++E    L   +   G  PD+ TY  +++G+   G  +EAY+F  +M + G+ P
Sbjct: 490 GMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLP 549

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           D  +YN  ++    N++   A++L   M+         T+ ML+ +
Sbjct: 550 DSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDL 595



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 90/204 (44%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +   + ++ +  +     SL   M   G   +V +   ++  +C    V+ A   
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           + +M   G  PD +T+N  +  LC+     EA+ L+  M+  G  P+V +YN +I+   +
Sbjct: 154 MGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCK 213

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G    A   + +M++     +V TY  +ID L     V EA   L E+V++G+      
Sbjct: 214 NGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVT 273

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           +++ L     +G L    +L   M
Sbjct: 274 YNTILHGFCSLGQLNEATRLFKEM 297


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 190/411 (46%), Gaps = 33/411 (8%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK---IAFRFFMWAGHQDNYAHE 114
           +I+ SN    ++++L S G+ L+ D +  VL+R +F          F+ +AG +  + H 
Sbjct: 47  MINGSNLQGELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYAGARRGFYHS 106

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
             + + M+ IL     + ++F  +  +L   KR ++  +    + ++L +  +   V+  
Sbjct: 107 SFSLDTMLYILG----RNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQT 162

Query: 175 PE--------------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--- 217
            E                  N LL  LC+   +  A  +   +K++ +P+  T+NIL   
Sbjct: 163 VESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSG 222

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                      EEM   G  PD  TYN+ ID +CK R + +A  L + MR +  T   P 
Sbjct: 223 WKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDET---PD 279

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L    + ++   +L  M   GC PDV+ Y   +   C+A ++ +A K ++
Sbjct: 280 VITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNYCIARRLGDADKLVD 339

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  KG  P+  TYN F +VL    +   +  LY RM+  GC P+ Q+   LI M+    
Sbjct: 340 EMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYERMLGNGCLPNTQSCMFLIKMFKRHE 399

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + D A   W +M  +G         V++D L D +KVEEA   L E+V KG
Sbjct: 400 KVDMAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKG 450



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 16/216 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI----LGM--------Q 220
           +P++   N L+D  CK   ++ A  +  +++ + + P+  TY      LG+        +
Sbjct: 242 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDETPDVITYTTIIGGLGLIGQPDKARE 301

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM + G  PD   YN AI  +C AR + +A  L + M  KG    SP A TY +   
Sbjct: 302 VLKEMKEYGCYPDVAAYNAAIRNYCIARRLGDADKLVDEMVKKGL---SPNATTYNLFFR 358

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L   + +   + L   M+ +GCLP+  +   +++      KV+ A +  E+M  KG+  
Sbjct: 359 VLSLANDLGRSWELYERMLGNGCLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGS 418

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
             +  +  L +LCD    +EA +    M+E G  PS
Sbjct: 419 YSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPS 454



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 133/340 (39%), Gaps = 54/340 (15%)

Query: 177 INALNL---LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLE----EMIQMG 229
           IN  NL   L ++L   G +  ++ +  RV  +V+ +        +QTLE       + G
Sbjct: 48  INGSNLQGELKESLSSSG-IHLSKDLIDRVLKRVRFSHGN----PIQTLEFYRYAGARRG 102

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
               +F+ +T +    + R   +  + L E  R   S IS  T +     +  L    + 
Sbjct: 103 FYHSSFSLDTMLYILGRNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQT 162

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E F     ++      D + +  +L  +C    + +A      + ++ + PD+ T+N  
Sbjct: 163 VESFWKFKRLVPD--FFDTACFNALLRTLCQEKSMTDARNVYHSLKHQ-FQPDLQTFNI- 218

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE------------------- 389
             +L   K+ +EA   +  M   G  P V TYN LI +Y +                   
Sbjct: 219 --LLSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDE 276

Query: 390 ----------------LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
                           +G+PD A E   EM + GC  DV  Y   I       ++ +A  
Sbjct: 277 TPDVITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNYCIARRLGDADK 336

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           L++E+V KGL      ++ +   LS+  DLG   +L + M
Sbjct: 337 LVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYERM 376


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 187/412 (45%), Gaps = 36/412 (8%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           ++ + +A  ++ K L      +  D V+ VLQ+ +   ++A  FF WA     Y H P  
Sbjct: 89  VLKSCDADADLSKYLCWFADEIDEDVVLKVLQKQRSNWQVALLFFTWAAGLPTYEHGPRT 148

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL-MILKQYTEKIKVKTQPE 176
           Y  M+DIL     + K+ RL+  + D +    +  V  + +  ++L +Y    KV+   E
Sbjct: 149 YIEMLDILG----RMKKVRLMRQLFDEIPEQRRGLVVTNRMFAVLLNRYAGAHKVQEAIE 204

Query: 177 I-------------NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------ 217
           I                 +LL +LC+   V+ AE +  + K++  P   ++NI+      
Sbjct: 205 IFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCV 264

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +   E+I     PD FTY T I+   KA  ++ A  LF  M  KG    +P 
Sbjct: 265 KGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKLSTAVKLFTSMWEKGI---NPD 321

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
                 +I  L    ++ E   + G M + GC  DV+TY  +++  C   + E+ Y+ L+
Sbjct: 322 VAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLIKHFCKIRRTEKVYELLD 381

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  KG  P+ +TY   LK     +   + + L  RM E GC     TYN+++++Y  + 
Sbjct: 382 DMEKKGCSPNNMTYTYILKT---TEKPRDVMNLIQRMEESGCKLDSDTYNLILNLYVSMK 438

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              G  + W EM++ G   D  ++ +M+ GL    ++++A      + ++G+
Sbjct: 439 YEKGVQQVWEEMERNGSGPDQRSFTIMVHGLHSQGQLDQALQYYTTMKSRGM 490



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 108/248 (43%), Gaps = 8/248 (3%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFM--RTKGSTISSPTAKTYAIMIVALVQNDR 287
           H P   TY   +D   + + V     LF+ +  + +G  +   T + +A+++       +
Sbjct: 144 HGPR--TYIEMLDILGRMKKVRLMRQLFDEIPEQRRGLVV---TNRMFAVLLNRYAGAHK 198

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++E   +     + G   D+  ++ +L  +C    VEEA     +  ++ +PP I ++N 
Sbjct: 199 VQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWNI 257

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L   C   +  +A R++  +I     P + TY   I+   + G+   A + +  M ++G
Sbjct: 258 ILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKLSTAVKLFTSMWEKG 317

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV     +ID L    K+ EA  +  E+ ++G +     +++ +     I     ++
Sbjct: 318 INPDVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLIKHFCKIRRTEKVY 377

Query: 468 KLSDHMRK 475
           +L D M K
Sbjct: 378 ELLDDMEK 385


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 201/453 (44%), Gaps = 45/453 (9%)

Query: 34  PSLVCKVFDESSDSVSDVAKLYEAIIDNS-NAYDNMEKALDSLGVPLTTDSVVGVLQRFQ 92
           P+    V  E+S S +D++ +   + D S      +E ALD  G+  ++  +  V   F 
Sbjct: 72  PNSAIDVKFEASYSPNDLSTISSILSDRSVRPGAALEDALDRTGIVPSSSLLEAVFDHFD 131

Query: 93  FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNK-- 150
              K     F+WA  +  +      +N +I++L+    K+++F    S++    R  +  
Sbjct: 132 SSPKFLHSLFLWAAKKSGFRPSAALFNRLINVLA----KSREFDSAWSLITSRLRGGEES 187

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINA------------------LNLLLDALCKCGL 192
             V V+V ++++++Y     V  QP I                      +LLD+LCK G 
Sbjct: 188 FLVSVEVFVILIRRYARAGMV--QPAIRTYEFACNLETISGTGSEGLFEILLDSLCKEGH 245

Query: 193 VDYAETICKRVK---NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
           V  A     R +   +  +P+   YNIL              +   EM +   +P   TY
Sbjct: 246 VRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTY 305

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
            T I+ +C+ R V  A +L + MR +G     P A  Y  ++ AL +  R +E   ++  
Sbjct: 306 GTLIEGYCRMRSVEIAIELVDEMRREGI---EPNAIVYNPIVDALGEAGRFKEALGMMER 362

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
            +     P +STY  +++G C AG +  A K L+ M  +G+ P   TYN F +       
Sbjct: 363 FMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGK 422

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            +E++ LY +MIE G  P   TY++L+ M  E    + A +  +EM  RG   D+ T  +
Sbjct: 423 IEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTM 482

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           ++  L    K EEA    E ++++G+   Y  F
Sbjct: 483 LMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTF 515



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 20/242 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN-------- 215
           + E  K K  P +     L++  C+   V+ A E + +  +  ++PNA  YN        
Sbjct: 290 WFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGE 349

Query: 216 ------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  LGM  +E  + +   P   TYN+ +  +CKA  ++ A+ + + M  +G T   
Sbjct: 350 AGRFKEALGM--MERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFT--- 404

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY        +  ++EE  SL   MI SG  PD  TY  +L+ +C   ++  A + 
Sbjct: 405 PTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQV 464

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM  +G+  D+ T    + +LC     +EA   +  MI  G  P   T+  L   + +
Sbjct: 465 CNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMK 524

Query: 390 LG 391
            G
Sbjct: 525 RG 526



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 21/188 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P I+  N L+   CK G +  A  I K  +     P   TYN               M  
Sbjct: 370 PTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSL 429

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI+ G+APD  TY+  +   C+   +  A  +   M+ +G  +   T+    +++  
Sbjct: 430 YNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATS---TMLMHL 486

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-- 339
           L +  + EE F+   HMI+ G +P   T+  + +     G  + A K  E M +  +   
Sbjct: 487 LCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKLQEMMSSVPHSEK 546

Query: 340 -PDIVTYN 346
            PD  TYN
Sbjct: 547 LPD--TYN 552


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 147/310 (47%), Gaps = 28/310 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-------------------ETICKRVKNKV 207
           E I     P+    + L+D LCK G  + A                   ETI +R+ NK 
Sbjct: 103 EMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKY 162

Query: 208 KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                   +LG+     +I  G  P    +N  I+ FCKA+ +  A  L E M  KG   
Sbjct: 163 NSVELASKVLGV-----VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCV- 216

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+ I+I  L + +R+ E   LL  M+  GC P+V TY  V+ G+C  G+V++AY
Sbjct: 217 --PNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAY 274

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  + M  +  PP++VT+N  +  LC  K  +EA +LY RM E GC P + TYN LI   
Sbjct: 275 ELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 334

Query: 388 FELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            +  + D AF+ +  + + G  A +  TY  +  G     ++ +AC +   +V+KG    
Sbjct: 335 CKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD 394

Query: 447 YRKFDSYLMQ 456
              + S +++
Sbjct: 395 LATYTSLILE 404



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P++     L+ ALCK G  D A+ + +  +     P+  T++ L              + 
Sbjct: 76  PDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRV 135

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           LE++IQ G    +  + T I   C K   V  A+ +   +  KG T   PT   + ++I 
Sbjct: 136 LEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFT---PTVLMFNLVIN 192

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   ++  + LL  MI  GC+P+V T+  ++ G+C A +V EA + LE+M   G  P
Sbjct: 193 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSP 252

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTY+  +  LC     D+A  L+  M    C P+V T+N+LI    +    + A + +
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 312

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           H M + GCA D+ TY  +IDGL    +V+EA  L + +   G+
Sbjct: 313 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 355



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 140/316 (44%), Gaps = 52/316 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P +   NL+++  CK   +D A  + +  ++    PN  T+ IL              Q 
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE+M+  G +P+  TY+T I+  CK   V +A +LF+ M  +      P   T+ I+I  
Sbjct: 242 LEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNC---PPNVVTHNILIDG 298

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE---EMG---- 334
           L +  R+EE   L   M  +GC PD+ TY  +++G+C + +V+EA++  +   E G    
Sbjct: 299 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 358

Query: 335 -----------------------------NKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                                        +KG+ PD+ TY   +   C      E + L 
Sbjct: 359 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 418

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M   G  P V T + ++   FE    + A + +  M  RGC  D   Y ++++G+   
Sbjct: 419 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 478

Query: 426 SKVEEACFLLEEVVNK 441
           SK  +A  +LE+V++K
Sbjct: 479 SKHNKALAVLEQVIDK 494



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 17/247 (6%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  TY IL             +Q LEEM   G   +   + T +   C A  V EA + 
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           F  M        +P   TY  ++ AL +  + +E   +L  MI  GC PD  T+  +++G
Sbjct: 67  FRAMAKD----CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE-ALRLYGRMIEVGCWP 375
           +C  G  E+A++ LE++  +G       +   ++ LC+  N  E A ++ G +I  G  P
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP 182

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +V  +N++I+ + +  + D A++    M ++GC  +V T+ ++I GL   ++V EA  LL
Sbjct: 183 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLL 242

Query: 436 EEVVNKG 442
           E++V  G
Sbjct: 243 EKMVTGG 249



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 129/322 (40%), Gaps = 55/322 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL--GMQTLEEM----- 225
           P+I   N L+D LCK   VD A  + + +        NA TY+ L  G   L  M     
Sbjct: 322 PDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACR 381

Query: 226 -----IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                +  G +PD  TY + I  +CK     E  +L E M +KG     P   T + ++ 
Sbjct: 382 IFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF---PPRVNTLSAVLG 438

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM----------------------- 317
            L + +  E    L   M   GC  D   Y  V+EGM                       
Sbjct: 439 GLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRK 498

Query: 318 ---------------CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
                          C  G+ ++A + L +M  +G+   + +YN  L  L   +  DEA 
Sbjct: 499 FNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEAT 558

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +++  M+  G  P + T N++IS      + D A+E    M K GC  D++T   +I G 
Sbjct: 559 QVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGY 618

Query: 423 FDCSKVEEACFLLEEVVNKGLK 444
               + + A  LLEE+   GL+
Sbjct: 619 CKSGRADLARKLLEEMTEAGLE 640



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C+P+  TY  ++ G   AG ++ A + LEEM + G+  + V +   +K LCD     EAL
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEAL 64

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             + R +   C P V TY  L+    + G+ D A     EM  RGCA D  T+  +IDGL
Sbjct: 65  EHF-RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
                 E+A  +LE+V+ +G+      F++ + +L
Sbjct: 124 CKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL 158



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 6/210 (2%)

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           I  P   TY I+I        ++    LL  M ++G   +   +  +++G+C AG+V EA
Sbjct: 4   ICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA 63

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +    M  K   PD++TY   +  LC     DEA  +   MI  GC P   T++ LI  
Sbjct: 64  LEHFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGL 443
             + G  + AF    ++ +RG       +  +I  L  C+K   VE A  +L  V+ KG 
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL--CNKYNSVELASKVLGVVIAKGF 180

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                 F+  +       DL + +KL + M
Sbjct: 181 TPTVLMFNLVINGFCKAKDLDSAYKLLEVM 210



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P +   +  +++ C+     +A  L   M  +G    +    +Y  ++  L +  R +E 
Sbjct: 501 PSSSAVDALVESLCQVGRTDDAKQLLHKMSERGF---AAAVSSYNGLLSGLSRLQRWDEA 557

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +   M+++G  P++ST   V+  +C A KV++AY+ ++ M   G  PDI T N  +  
Sbjct: 558 TQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGG 617

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            C +   D A +L   M E G  P+  T+++L
Sbjct: 618 YCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649


>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
 gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
          Length = 461

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 180/397 (45%), Gaps = 41/397 (10%)

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM-IDILSSTKYKAKQFR 136
           P+T   +  +L R Q + K+A + F           +P  Y+L+  D++ +   +AK F 
Sbjct: 6   PITPFRLASLL-RLQKDPKLALQLF--KNPNPKTPSKPFRYSLLSYDLIITKLGRAKMFN 62

Query: 137 LVCSMLDYMKRNNKVFVPVDVLLM--------------ILKQYTEKIKVKTQPEINALNL 182
            +  +L  +K    +F P + L                 LK   E    + Q  + + N 
Sbjct: 63  EMQEILAQLKEET-LFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQRTVKSYNS 121

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230
           LL     C   D    +   ++   K +A TYN+L              +  +EM   G 
Sbjct: 122 LLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTNRGV 181

Query: 231 APDNFTYNTAIDTFCKARMVTEA----ADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           +P+  T+   I  FC    + EA     D+ +  R        P A  YA +I  + +N 
Sbjct: 182 SPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRV------YPNAYIYASLIKGVCKNG 235

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +   F L   MI +    D + Y  ++ G+  AG+ EEA    E+M  +GY PD VTYN
Sbjct: 236 ELSLAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEALGVWEDMKERGYKPDTVTYN 295

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             + + C +K+ + A RL   M+E GC P V +YN+++   FE G+   A + + +M +R
Sbjct: 296 VIINLFCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRR 355

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           GCA DV +Y ++ DG  +  + +EA F+L+E++ KG 
Sbjct: 356 GCAPDVVSYRILFDGFCNGMQFKEAAFILDEMIFKGF 392



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           L  +  +EMI+     D   Y+T I    KA    EA  ++E M+ +G     P   TY 
Sbjct: 239 LAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEALGVWEDMKERGY---KPDTVTYN 295

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++I    ++   E  + LL  M+  GC PDV +Y  +L  +   GK  EA    E+M  +
Sbjct: 296 VIINLFCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRR 355

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD+V+Y       C+     EA  +   MI  G  P   +    ++   E    D  
Sbjct: 356 GCAPDVVSYRILFDGFCNGMQFKEAAFILDEMIFKGFVPCSASICKFVNRLCEGKNEDLL 415

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
              ++ ++K G   +VD + + +  +F   K+  +  L++ +++
Sbjct: 416 RSAFNTLEK-GKLVNVDLWRMAVAMVFKDDKLSSSFNLVDSLID 458


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 20/306 (6%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG------------MQTLE 223
           ++   N LLDAL K      A ++ + ++ +  P+A TYN L             +  L 
Sbjct: 175 DLPLFNSLLDALVKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKDTSRALDILR 234

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--PTAKTYAIMIVA 281
           +M++ G AP   TYN  +  F ++  +  A D F  M+ +GS   +  P   +Y  ++  
Sbjct: 235 QMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHG 294

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++++   +   M   GC P ++TY  +++  C  G VE+A    ++M  KGY P+
Sbjct: 295 LGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPN 354

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   ++ LC     D A++L  +M   GC P+VQTYN+LI   FE G+ + A   + 
Sbjct: 355 VVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFE 414

Query: 402 EMDK-RGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKLPYR-KFDSYLMQ 456
            M K   C  + DTY ++I  +F   + E+   A  ++ E+V++G  LP R  F+  L  
Sbjct: 415 TMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGY-LPRRFMFNRVLNG 473

Query: 457 LSVIGD 462
           L + G+
Sbjct: 474 LMLTGN 479



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G A D   +N+ +D   K+R   +AA L   +  +      P A TY  +     +    
Sbjct: 171 GVAQDLPLFNSLLDALVKSRHAGKAASLVRALERR----FPPDAVTYNTLADGWCRVKDT 226

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-----PPDIV 343
                +L  M+ SG  P  +TY  +L+G   +G+++ A+ F  +M  +G       PD+V
Sbjct: 227 SRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVV 286

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           +Y   L  L      D+A +++  M   GC PS+ TYN LI +  + G  + A   + +M
Sbjct: 287 SYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDM 346

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            ++G   +V TY V+I GL    K++ A  LL+++  +G
Sbjct: 347 IRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREG 385



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 32/209 (15%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           K + E  +    P I   N L+   CK G V+ A  +                       
Sbjct: 306 KVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAV----------------------F 343

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++MI+ G+ P+  TY   I   C A  +  A  L + M+ +G     P  +TY ++I  L
Sbjct: 344 DDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREG---CEPNVQTYNVLIGYL 400

Query: 283 VQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEE---AYKFLEEMGNKGY 338
            +   +E+   L   M     CLP+  TY  ++  M +  + E+   A + + EM ++GY
Sbjct: 401 FEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGY 460

Query: 339 PPDIVTYNCFLKVLCDNKNGD---EALRL 364
            P    +N  L  L    N +   E LR+
Sbjct: 461 LPRRFMFNRVLNGLMLTGNQELSRELLRM 489


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 17/299 (5%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GMQTLEE 224
           ++N+++   CK G V+ A    + + N+    P+  T+N L             ++ ++ 
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+Q G+ PD +TYN+ I   CK   V EA +  + M T+     SP   TY  +I  L +
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDC---SPNTVTYNTLISTLCK 377

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            +++EE   L   + + G LPDV T+  +++G+CL      A +  EEM +KG  PD  T
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +  LC     DEAL +  +M   GC  SV TYN LI  + +  +   A E + EM+
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEME 497

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             G +++  TY  +IDGL    +VE+A  L+++++ +G K     ++S L      GD+
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDI 556



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 143/297 (48%), Gaps = 18/297 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL------EEMIQ 227
           P++   N ++  LCK G V  A E + + +     PN  TYN L + TL      EE  +
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTL-ISTLCKENQVEEATE 386

Query: 228 M-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           +       G  PD  T+N+ I   C  R    A +LFE MR+KG     P   TY ++I 
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC---EPDEFTYNMLID 443

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L    +++E  ++L  M  SGC   V TY  +++G C A K+ EA +  +EM   G   
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSR 503

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN  +  LC ++  ++A +L  +MI  G  P   TYN L++ +   G+   A +  
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIV 563

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             M   GC  D+ TY  +I GL    +VE A  LL  +  KG+ L    ++  +  L
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGL 620



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 168/399 (42%), Gaps = 34/399 (8%)

Query: 75  LGVPLTTDSVVGVLQRFQFEEKI--AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKA 132
            G   +  SV  ++  F  E ++  A  F     +QD +  +   +N +++ L     KA
Sbjct: 253 FGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC----KA 308

Query: 133 KQFRLVCSMLDYMKRNN---KVFVPVDVL--LMILKQYTEKIKVKTQ-------PEINAL 180
              +    ++D M +      V+    V+  L  L +  E ++   Q       P     
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  LCK   V+ A  + + + +K + P+  T+N L             M+  EEM  
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD FTYN  ID+ C    + EA ++ + M   G   S     TY  +I    + ++
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS---VITYNTLIDGFCKANK 485

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   +   M   G   +  TY  +++G+C + +VE+A + +++M  +G  PD  TYN 
Sbjct: 486 IREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNS 545

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L   C   +  +A  +   M   GC P + TY  LIS   + G  + A +    +  +G
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            A     Y  +I GLF   K  EA  L  E++ +    P
Sbjct: 606 IALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAP 644



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 181/399 (45%), Gaps = 43/399 (10%)

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149
           R Q ++  A R F  A  + N++ EP  Y  ++  L     ++  F  +  +L+ MK N+
Sbjct: 58  RSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLG----RSGSFDDMRKILEDMK-NS 112

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEI-NALNLLLDALCKCGLVDYAETICKRVKNKVK 208
              +     L++++ Y +    + Q EI   ++ ++D        D+           +K
Sbjct: 113 GCEMGTSPFLILIESYAQ---FELQDEILGVVHWMID--------DFG----------LK 151

Query: 209 PNANTYNILGMQTLE----EMIQMGHA--------PDNFTYNTAIDTFCKARMVTEAADL 256
           P+ + YN +    ++    +++++ HA        PD  T+N  I   C+A  +  A  +
Sbjct: 152 PDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILM 211

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            E M + G     P  KT+  ++   ++   ++    +   M+  GC     +   ++ G
Sbjct: 212 LEDMPSYGLV---PDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268

Query: 317 MCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            C  G+VE+A  F++EM N+ G+ PD  T+N  +  LC   +   A+ +   M++ G  P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            V TYN +IS   +LGE   A E   +M  R C+ +  TY  +I  L   ++VEEA  L 
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             + +KG+      F+S +  L +  +     +L + MR
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 53/211 (25%)

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D  CK   +  AE I   ++ + V  N+ TYN L              Q +++MI 
Sbjct: 474 NTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIM 533

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD FTYN+ +  FC+   + +AAD+ + M + G     P   TY  +I  L +  R
Sbjct: 534 EGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGC---EPDIVTYGTLISGLCKAGR 590

Query: 288 ME-----------------------------------ECFSLLGHMINSG-CLPDVSTYK 311
           +E                                   E  +L   M+      PD  +Y+
Sbjct: 591 VEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYR 650

Query: 312 EVLEGMC-LAGKVEEAYKFLEEMGNKGYPPD 341
            V  G+C   G + EA  FL E+  KG+ P+
Sbjct: 651 IVFRGLCNGGGPIREAVDFLVELLEKGFVPE 681



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P+ + Y+E+L  +  +G  ++  K LE+M N G       +   ++     +  DE L +
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGV 140

Query: 365 YGRMIE-VGCWPSVQTYNMLISMYFELGEPDGAFETWH-EMDKRGCAQDVDTYCVMIDGL 422
              MI+  G  P    YN ++++  + G      E  H +M   G   DV T+ V+I  L
Sbjct: 141 VHWMIDDFGLKPDTHFYNRMLNLLVD-GNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKAL 199

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
               ++  A  +LE++ + GL    + F + +      GDL    ++ + M +F
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEF 253


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 152/327 (46%), Gaps = 19/327 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E IK +    +N  N+ ++ LC+ G ++ AE   + +K   + PN  TYN L      
Sbjct: 188 YKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCK 247

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        ++EM+     P+  T+NT ID FCK   V  A   FE M+ +G    
Sbjct: 248 RGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGL--- 304

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  L  N ++EE   L   M+  G  P++ TY  ++ G C    ++EA K
Sbjct: 305 KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATK 364

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +++  +   P+++T+N  +   C     +E   L   M++ G  P+V TYN LI+   
Sbjct: 365 VFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLC 424

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
              +   A E  +EM+ +G   DV TY ++IDGL    K   A  LL E+ N GLK  + 
Sbjct: 425 RKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHV 484

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +++ +    + G L A   +   M K
Sbjct: 485 TYNTLMDGYCMEGKLKAALNVRTRMEK 511



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 143/298 (47%), Gaps = 16/298 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-------- 217
           E +  K  P     N L+D  CK   V  A+   + + K  +KPN  TYN L        
Sbjct: 263 EMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNG 322

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                +   ++M+ +G  P+  TYN  I+ FCK +M+ EA  +F+ +  +      P   
Sbjct: 323 KLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELV---PNVI 379

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+  MI A  +   MEE FSL   M++ G LP+VSTY  ++ G+C    ++ A + L EM
Sbjct: 380 TFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEM 439

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            NKG   D+VTYN  +  LC N     A +L   M  +G  P+  TYN L+  Y   G+ 
Sbjct: 440 ENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKL 499

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             A      M+K     +V TY V+I G    +K+E A  LL E++ KGL      +D
Sbjct: 500 KAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYD 557



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 24/269 (8%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S+++ +  N K+   +D+       + + + +  +P I   N L++  CK  ++  A  +
Sbjct: 313 SLINGLCNNGKLEEAIDL-------WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKV 365

Query: 200 CKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              V K ++ PN  T+N +            G      M+  G  P+  TYN  I   C+
Sbjct: 366 FDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCR 425

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
            + +  A +L   M  KG         TY I+I  L +ND+      LL  M N G  P+
Sbjct: 426 KQDLQAAKELLNEMENKGL---KGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPN 482

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             TY  +++G C+ GK++ A      M  +   P++VTYN  +K  C     + A  L  
Sbjct: 483 HVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLN 542

Query: 367 RMIEVGCWPSVQTYNMLISMYFELG-EPD 394
            M+E G  P+  TY+++     E G  PD
Sbjct: 543 EMLEKGLNPNRTTYDIVRLEMLEKGFSPD 571



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 59/240 (24%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175
           + +N MID         + F L  SMLD                       E I     P
Sbjct: 379 ITFNTMIDAYCKEGMMEEGFSLCSSMLD-----------------------EGI----LP 411

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTL 222
            ++  N L+  LC+   +  A+ +   ++NK +K +  TYNIL              + L
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLL 471

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM  +G  P++ TYNT +D +C    +  A ++   M  +      P   TY ++I   
Sbjct: 472 NEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER---KQPNVVTYNVLIKGY 528

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            + +++E    LL  M+  G  P+ +TY  V                  EM  KG+ PDI
Sbjct: 529 CKINKLEAANGLLNEMLEKGLNPNRTTYDIV----------------RLEMLEKGFSPDI 572



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 40/242 (16%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +D+F K    T ++     +   G      TA    ++++A V+N  +   +       +
Sbjct: 101 LDSFVKNEKHTVSSVFHSLLLDGGR--PGATALIIDMLVLAYVKNLELHCAYEAFTRAKD 158

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G    +++   +L  +    K+ +     +EM  +    ++ T+N F+  LC     ++
Sbjct: 159 YGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNK 218

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP--------------------------- 393
           A      M   G  P+V TYN L+  Y + G                             
Sbjct: 219 AEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNT 278

Query: 394 --DG---------AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             DG         A + + EM K+G   ++ TY  +I+GL +  K+EEA  L +++V  G
Sbjct: 279 LIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLG 338

Query: 443 LK 444
           LK
Sbjct: 339 LK 340


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 143/288 (49%), Gaps = 16/288 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL----------- 217
           ++  +P+    N L+  LC  G    A  +  + ++ +  P+  TY IL           
Sbjct: 25  EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYK 84

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             M+ L+EM   G  PD  TYN  ++  C+   V +A    EF++   S    P   +Y 
Sbjct: 85  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDA---IEFLKNLPSYGCEPNTVSYN 141

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           I++  L   +R E+   L+G M   GC P+V T+  ++  +C  G VE A + LE++   
Sbjct: 142 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKY 201

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P+ ++YN  L   C  K  D+A+     M+  GC+P + +YN L++     GE D A
Sbjct: 202 GCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVA 261

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            E  H++  +GCA  + +Y  +IDGL    K +EA  LL E+V+KGL+
Sbjct: 262 VELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ 309



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 143/281 (50%), Gaps = 16/281 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P   + N++L  LC     + AE +   +  K   PN  T+N+L             ++
Sbjct: 134 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 193

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE++ + G  P++ +YN  +  FCK + + +A    + M ++G     P   +Y  ++ 
Sbjct: 194 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC---YPDIVSYNTLLT 250

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++  ++    LL  + + GC P + +Y  V++G+  AGK +EA + L EM +KG  P
Sbjct: 251 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 310

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+     LC     ++A+R +G++ ++G  P+   YN +I    +  E   A + +
Sbjct: 311 DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLF 370

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             M   GC  +  TY ++I+GL     ++EA  LL+E+ ++
Sbjct: 371 AYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 411



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 227 QMGHAPDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +M   PD +TYNT I   C + R     A L E +R +      P   TY I++ A  + 
Sbjct: 25  EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRR----CVPDVVTYTILLEATCKR 80

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
              ++   LL  M + GC PD+ TY  V+ G+C  G+V++A +FL+ + + G  P+ V+Y
Sbjct: 81  SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 140

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  LK LC  +  ++A  L G M + GC P+V T+NMLIS     G  + A E   ++ K
Sbjct: 141 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 200

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            GC  +  +Y  ++       K+++A   L+ +V++G       +++ L  L   G++  
Sbjct: 201 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 260

Query: 466 ----IHKLSD 471
               +H+L D
Sbjct: 261 AVELLHQLKD 270



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 16/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E ++ +  P++    +LL+A CK      A  +   +++K   P+  TYN++        
Sbjct: 57  EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 116

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L+ +   G  P+  +YN  +   C A    +A +L   M  KG     P   
Sbjct: 117 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGC---PPNVV 173

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ ++I  L +   +E    +L  +   GC P+  +Y  +L   C   K+++A  FL+ M
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G  PDIV+YN  L  LC +   D A+ L  ++ + GC P + +YN +I    + G+ 
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 293

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A E  +EM  +G   D+ TY  +  GL    ++E+A     +V + G++
Sbjct: 294 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIR 344



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            Y  ++ G C AG+++ A + + EM  +   PD  TYN  ++ LC       AL +   M
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +   C P V TY +L+    +      A +   EM  +GC  D+ TY V+++G+    +V
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118

Query: 429 EEACFLLEEVVNKG 442
           ++A   L+ + + G
Sbjct: 119 DDAIEFLKNLPSYG 132


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 147/325 (45%), Gaps = 52/325 (16%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
            ++    +P++ + N ++   C  G +D A  +   +   ++P+  TYN L         
Sbjct: 110 RRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP--MEPDTYTYNTLIRGLCGRGR 167

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               +  L++M++ G  PD  TY   ++  CK     +A  L + MR KG    +P   T
Sbjct: 168 TDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGC---APDIVT 224

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y +++  + Q  R+++    L  + + GC P+  +Y  VL+G+C A + E+A K + EM 
Sbjct: 225 YNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 284

Query: 335 NKGYPPDIVT-----------------------------------YNCFLKVLCDNKNGD 359
            KG PP++VT                                   YN  L   C  K  D
Sbjct: 285 RKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMD 344

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A+     M+  GC+P + +YN L++     GE D A E  H++  +GC   + +Y  +I
Sbjct: 345 RAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 404

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLK 444
           DGL    K EEA  LL E+V KGL+
Sbjct: 405 DGLTKAGKTEEALELLNEMVTKGLQ 429



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------------GMQ 220
           +P   + N++L  LC     + AE +   +  K +P N  T+N+L             M+
Sbjct: 254 EPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAME 313

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+++ + G  P++ +YN  +  FCK + +  A    E M + G     P   +Y  ++ 
Sbjct: 314 ILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCY---PDIVSYNTLLT 370

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +   ++    LL  + + GC P + +Y  V++G+  AGK EEA + L EM  KG  P
Sbjct: 371 ALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQP 430

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+     LC     +EA++ + ++ ++G  P+   YN ++    +      A + +
Sbjct: 431 DIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLF 490

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M   GC  +  TY ++I+GL     V+EA  ++ E+ ++G+
Sbjct: 491 TYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGV 533



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 144/312 (46%), Gaps = 23/312 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------GMQTLEEMIQ-MGHAPD 233
           L+  LC  G    A    +RV    +P+  +YN +         +     ++  M   PD
Sbjct: 96  LIKKLCASGRTAEA----RRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPMEPD 151

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            +TYNT I   C       A  + + M  +G     P   TY I++ A  +    ++   
Sbjct: 152 TYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCV---PDVVTYTILLEATCKRSGYKQAVK 208

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  M + GC PD+ TY  V+ G+C  G+V++A +FL+ + + G  P+ V+YN  LK LC
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLC 268

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +  ++A +L   M   G  P+V T+NMLIS     G  + A E   ++ K GC  +  
Sbjct: 269 TAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA----IHKL 469
           +Y  ++       K++ A   +E +V+ G       +++ L  L   G++ A    +H+L
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 470 SDHMRKFYNPVI 481
            D   K   PV+
Sbjct: 389 KD---KGCTPVL 397



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++    +LL+A CK      A  +   +++K   P+  TYN++             M+ 
Sbjct: 185 PDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEF 244

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ +   G  P+  +YN  +   C A    +A  L   M  KG     P   T+ ++I  
Sbjct: 245 LKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR---PPNVVTFNMLISF 301

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   +E    +L  +   GC P+  +Y  +L   C   K++ A  F+E M + G  PD
Sbjct: 302 LCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPD 361

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IV+YN  L  LC     D A+ L  ++ + GC P + +YN +I    + G+ + A E  +
Sbjct: 362 IVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLN 421

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           EM  +G   D+ TY  +  GL    ++EEA     +V + G++     +++ L+ L
Sbjct: 422 EMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGL 477


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 183/400 (45%), Gaps = 37/400 (9%)

Query: 71  ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
           ALD L    ++  V  VL RF  +   A  FF WA     Y H P  YNLM+DIL     
Sbjct: 117 ALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLTGYRHSPELYNLMVDILG---- 172

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT---------------EKIKVKTQP 175
           K + F  +  +++ M R    +V ++ +  ++++                 EK  VK   
Sbjct: 173 KCRSFDSMSELVEEMARLEG-YVTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKK-- 229

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           +  ALN+L+DAL K   V++A  +    K  +  ++ ++N+L              + +E
Sbjct: 230 DTAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAME 289

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M + G  PD F+Y   I+ +   R   +   + E MR  G     P A TY  +++ L 
Sbjct: 290 DMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGC---PPNAVTYTSVMLHLG 346

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  ++ +   +   M + GC+ D   Y  ++  +  AG++++A    E+M  +G   D+V
Sbjct: 347 KAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGVVRDVV 406

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +   C +   + ALRL   M +  C P+V TY+ L+ M  +             M
Sbjct: 407 TYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHM 466

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            K   + D+ TY ++++ L    KVE+A   LEE+V +G 
Sbjct: 467 FKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGF 506


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 147/303 (48%), Gaps = 21/303 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+    N L+  LC  G +  A     K +    +P+  TY  L          
Sbjct: 174 LKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNT 233

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M+Q    P+   YNT ID+ CK R VTEA +LF  M TKG    SP   TY
Sbjct: 234 SAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGI---SPDIFTY 290

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I AL      +   +LL  M+NS  +P+V  +  V++ +C  G +  A+  ++ M  
Sbjct: 291 NSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIK 350

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  PD+VTY   +   C     DEA++++  M+  GC P+V++YN+LI+ Y ++   D 
Sbjct: 351 RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDK 410

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A     +M  +G   D  TY  +I GL    +++ A  L  E+V  G ++P    YR   
Sbjct: 411 AMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG-QIPDLVTYRILL 469

Query: 452 SYL 454
            YL
Sbjct: 470 DYL 472



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 4/267 (1%)

Query: 209 PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           P+ NT +   + +   M+ M   P    +   + +  K +  +    L   M + G    
Sbjct: 88  PHFNTLDD-ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGI--- 143

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   T  I+I +     R+   FS+L  ++  GC PD +T+  ++ G+C+ GK+ EA  
Sbjct: 144 PPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALH 203

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++   +G+ PD+VTY   +  LC   N   A+RL   M++  C P+V  YN +I    
Sbjct: 204 LFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLC 263

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           +  +   AF  + EM  +G + D+ TY  +I  L +  + +    LL E+VN  +     
Sbjct: 264 KDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVV 323

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            F + +  L   G +   H + D M K
Sbjct: 324 VFSTVVDALCKEGMIAIAHDVVDMMIK 350



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 127/310 (40%), Gaps = 33/310 (10%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVFVPVDV--LL 159
           Q N     +AYN +ID L   +   + F L   M+      D    N+ +    ++    
Sbjct: 245 QKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWK 304

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
            +     E +  K  P +   + ++DALCK G++  A  +                    
Sbjct: 305 HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV-------------------- 344

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             ++ MI+ G  PD  TY   +D  C    + EA  +F+ M  KG     P  ++Y I+I
Sbjct: 345 --VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCV---PNVRSYNILI 399

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               Q  RM++   LL  M   G + D  TY  ++ G+C  G+++ A     EM   G  
Sbjct: 400 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI 459

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+VTY   L  LC N +  EA+ L   +        +  YN+ I      GE + A + 
Sbjct: 460 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDL 519

Query: 400 WHEMDKRGCA 409
           +  +  +G A
Sbjct: 520 FSNLSCQGFA 529



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 106/263 (40%), Gaps = 38/263 (14%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M   G  PD +T N  I++FC  R +  A  +   +   G     P   T+  +I  L 
Sbjct: 137 QMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGC---QPDNTTFNTLIRGLC 193

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              ++ E   L    I  G  PDV TY  ++ G+C  G    A + L  M  K   P+++
Sbjct: 194 VEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVI 253

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE----------- 392
            YN  +  LC ++   EA  L+  MI  G  P + TYN LI     L E           
Sbjct: 254 AYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 313

Query: 393 --------------------PDGAFETWHE----MDKRGCAQDVDTYCVMIDGLFDCSKV 428
                                +G     H+    M KRG   DV TY  ++DG    S++
Sbjct: 314 VNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEM 373

Query: 429 EEACFLLEEVVNKGLKLPYRKFD 451
           +EA  + + +V+KG     R ++
Sbjct: 374 DEAVKVFDTMVHKGCVPNVRSYN 396


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 172/392 (43%), Gaps = 34/392 (8%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           A  FF WA  +  + H P  YN MID+      K + F L   ++D MK  N V + ++ 
Sbjct: 125 ALSFFNWATSRPGFTHHPEPYNEMIDLAG----KVRNFDLGWQVIDLMKARN-VEISIET 179

Query: 158 LLMILKQY------TEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
             +++++Y      +E +           +P+  A ++L+  LC+      A++    +K
Sbjct: 180 FSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLK 239

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
           +K +P+   Y  L              +   EM   G  P+ +TY   ID  C+   +T 
Sbjct: 240 DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITR 299

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A D+F  M   G     P + T+  ++   V+  R E+   +   M   GC PD  TY  
Sbjct: 300 AHDVFAEMLDVGC---EPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNF 356

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++E  C  G ++EA K L  M  KG  P+  T+N     +   ++ + A RLY +M E+ 
Sbjct: 357 LIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELK 416

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C  +  TYN+L+ M+ +    D   +   EMD+     +V+TYCV+I           A 
Sbjct: 417 CKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAY 476

Query: 433 -FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            F  E V  K LK     ++  L QL   G L
Sbjct: 477 KFFREMVEEKCLKPSLPVYEKVLQQLRKAGQL 508



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 25/243 (10%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDY------MKRNN--KVFVPVDVLLMILKQYTEKI 169
           Y ++ID L       +   +   MLD       +  NN  +V V       +L+ Y +  
Sbjct: 284 YTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMK 343

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
           ++   P+    N L+++ CK G +D A + +   VK    PNA+T+N L   ++ ++  +
Sbjct: 344 RMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGL-FGSIAKLRDV 402

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------SPTAKTYA 276
             A  +  Y    +  CKA  VT    +  F+ TK + +              P   TY 
Sbjct: 403 NGA--HRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYC 460

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           ++I            +     M+   CL P +  Y++VL+ +  AG++++  + +  M +
Sbjct: 461 VLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVD 520

Query: 336 KGY 338
           +G+
Sbjct: 521 RGF 523


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 17/281 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+D  CK   V  A  +   ++ + ++PN  TYNIL             +   ++M+ 
Sbjct: 232 NILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVS 291

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P+  T+N  I+ FCK + V EA +LF  M  +G     P A TY  +I A  ++ R
Sbjct: 292 SDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGV---DPNAMTYTTLIDAYCKDGR 348

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ME+ F+L   MI+ G  P+VSTY  ++ G+C  G V+ A   + EM +K    D+VTYN 
Sbjct: 349 MEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNI 408

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC      +A++L   M E G  PS  TYN L+  Y   G    A      M+++G
Sbjct: 409 LIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
              +V T+ V+I G     ++E+A  LL E++ +GL +P R
Sbjct: 469 KQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGL-VPNR 508



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 19/306 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E IK K +  + + N++++ LCK G ++ A  + + +K   V PN  TYN L      
Sbjct: 143 YREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCK 202

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L+EM+  G  P+  TYN  ID FCK   V+ A  +F  M+ +G    
Sbjct: 203 MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQG---L 259

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY I+I  L  + +++E  +L   M++S   P+V T+  ++ G C    V EA  
Sbjct: 260 RPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAIN 319

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M  +G  P+ +TY   +   C +   ++A  LY  MI+ G +P V TYN LI+   
Sbjct: 320 LFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLC 379

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G+   A    +EM  +  + DV TY ++ID L    +  +A  LL+E+  KGL   + 
Sbjct: 380 RKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHV 439

Query: 449 KFDSYL 454
            +++ +
Sbjct: 440 TYNTLM 445



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 6/253 (2%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EMI+     +  ++N  ++  CK   +  A D+ E M+  G    SP   TY  +I    
Sbjct: 145 EMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGV---SPNVITYNTLIDGYC 201

Query: 284 QNDRMEECF---SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +  R+ + +   ++L  M+  G  P+  TY  +++G C    V  A +   EM  +G  P
Sbjct: 202 KMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRP 261

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  +  LC +   DEA+ L  +M+     P+V T+N+LI+ + +    + A   +
Sbjct: 262 NVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLF 321

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           ++M+K+G   +  TY  +ID      ++E+A  L   ++++G+      ++  +  L   
Sbjct: 322 NDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRK 381

Query: 461 GDLGAIHKLSDHM 473
           GD+ A   L + M
Sbjct: 382 GDVKAARSLMNEM 394


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 180/395 (45%), Gaps = 42/395 (10%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN-YAHEPLAYNLMIDILSSTKYKAKQF 135
           V LT+     +L+R   + K A  FF+WA  +   Y+H P A N M+D+L   +   + +
Sbjct: 83  VRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACNRMVDLLGKMRQIDRMW 142

Query: 136 RLVCSMLDYMKRNNKVFVPVDVL---------------LMILKQYTEKIKVKTQPEINAL 180
            L+  M      + +  V VD +                ++L    E + ++   E   +
Sbjct: 143 DLLSEM------HCRGLVTVDTIAKSIRRLAAARRWRDAILLFDQLEDLGLERNTE--TM 194

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N+LLDALCK   V+ A  +   +   + P+A T+NI              M T+EEM   
Sbjct: 195 NVLLDALCKERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMKNR 254

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P   TY   ++ +CK R      ++ + M ++G     P   TY +++ +L + +R 
Sbjct: 255 GFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGC---HPNVITYTMIMTSLTKCERF 311

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNC 347
           EE  S+   M +SGC PD   Y  ++  +  AG + EA + F  EM     P ++ TYN 
Sbjct: 312 EEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVPRNVATYNT 371

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEPDGAFETWHEM-DK 405
            + +LC     D+AL +   M    C P +QTY  L+ + F   G+         E+ D+
Sbjct: 372 MISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLFGRRGQTGAIHHLLSELRDR 431

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            G   D+DTY ++I GL    + + A  L +E+V 
Sbjct: 432 NGLGLDLDTYTLLIHGLCRVGETDWAYQLYDEMVG 466



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 5/216 (2%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G++      N  +D   K R +    DL   M  +G      T  T A  I  L    R 
Sbjct: 117 GYSHTPCACNRMVDLLGKMRQIDRMWDLLSEMHCRGLV----TVDTIAKSIRRLAAARRW 172

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            +   L   + + G   +  T   +L+ +C   KVE A +    M +    PD  T+N F
Sbjct: 173 RDAILLFDQLEDLGLERNTETMNVLLDALCKERKVELAREVFV-MLSPHIAPDAYTFNIF 231

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C  +  DEA+     M   G  P V TY  ++  Y +       +E    M  +GC
Sbjct: 232 VHGWCSVRRIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGC 291

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +V TY +++  L  C + EEA  + + + + G K
Sbjct: 292 HPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCK 327


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 149/334 (44%), Gaps = 52/334 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N+L+   CK G +D A  +  R+   V P+  TYN +             M+ L
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQVLDRMN--VAPDVVTYNTILRTLCDSGKLKQAMEVL 239

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +  +Q    PD  TY   I+  CK   V +A  L + MR KGS    P   TY ++I  +
Sbjct: 240 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS---KPDVVTYNVLINGI 296

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R++E    L +M + GC P+V T+  +L  MC  G+  +A K L +M  KG  P +
Sbjct: 297 CKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSV 356

Query: 343 VTYNCFLKVL-----------------------------------CDNKNGDEALRLYGR 367
           VT+N  +  L                                   C  K  D A+     
Sbjct: 357 VTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDI 416

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+  GC+P + TYN L++   + G+ D A E  +++  +GC+  + TY  +IDGL    K
Sbjct: 417 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 476

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            E A  LL+E+  KGLK     + S +  LS  G
Sbjct: 477 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 510



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 20/313 (6%)

Query: 162 LKQYTEKIKVKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           LKQ  E +  + Q    P++    +L++A CK   V  A  +   ++NK  KP+  TYN+
Sbjct: 232 LKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNV 291

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             ++ L  M   G  P+  T+N  + + C      +A  L   M  KG
Sbjct: 292 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 351

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP+  T+ I+I  L +   +     +L  M   GC P+  +Y  +L G C   K++
Sbjct: 352 C---SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMD 408

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A ++L+ M ++G  PDIVTYN  L  LC +   D A+ +  ++   GC P + TYN +I
Sbjct: 409 RAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVI 468

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               ++G+ + A +   EM ++G   D+ TY  ++ GL    KV+EA     ++   G++
Sbjct: 469 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR 528

Query: 445 LPYRKFDSYLMQL 457
                ++S ++ L
Sbjct: 529 PNAITYNSIMLGL 541



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   N++L ++C  G  +D  + +   ++    P+  T+NIL             + 
Sbjct: 318 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID 377

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M   G  P++ +YN  +  FCK + +  A +  + M ++G     P   TY  ++ 
Sbjct: 378 ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY---PDIVTYNTLLT 434

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ +++    +L  + + GC P + TY  V++G+   GK E A K L+EM  KG  P
Sbjct: 435 ALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKP 494

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  +  L      DEA++ +  +  +G  P+  TYN ++    +  + D A +  
Sbjct: 495 DIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFL 554

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M  + C     TY ++I+G+      +EA  LL E+ ++GL
Sbjct: 555 AYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GM 219
           ++P++   N+L++ +CK G +D A      + +   +PN  T+NI+              
Sbjct: 282 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAE 341

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + L +M++ G +P   T+N  I+  C+  ++  A D+ E M   G T   P + +Y  ++
Sbjct: 342 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCT---PNSLSYNPLL 398

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +  +M+     L  M++ GC PD+ TY  +L  +C  GKV+ A + L ++ +KG  
Sbjct: 399 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 458

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P ++TYN  +  L      + A++L   M   G  P + TY+ L+S     G+ D A + 
Sbjct: 459 PVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF 518

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +H+++  G   +  TY  ++ GL    + + A   L  +++K  K
Sbjct: 519 FHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCK 563



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +E + Q G  PD  TYN  I  +CK+  +  A  + + M        +P   TY  ++  
Sbjct: 172 MEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNV------APDVVTYNTILRT 225

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  + ++++   +L   +   C PDV TY  ++E  C    V +A K L+EM NKG  PD
Sbjct: 226 LCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 285

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +  +C     DEA++    M   GC P+V T+N+++      G    A +   
Sbjct: 286 VVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLS 345

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +M ++GC+  V T+ ++I+ L     +  A  +LE++   G
Sbjct: 346 DMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 386



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+N  +E+ F  L  M+  G +PD+     ++ G C  GK ++A   +E +   G  PD
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +   C +   D AL++  RM      P V TYN ++    + G+   A E   
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              ++ C  DV TY ++I+     S V +A  LL+E+ NKG K
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSK 283


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 147/316 (46%), Gaps = 29/316 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E I    QP+     +LL  LC+   ++ A  +  R+K                    
Sbjct: 30  FQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMK-------------------- 69

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
             +MG  PD+  YN  I  + KA+   +A   F+F+         PT  TY  ++  L +
Sbjct: 70  --EMGCVPDDAIYNALISGYSKAKDFGQA---FKFLAEMVKNHCLPTVVTYTNIVDGLCK 124

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            +R  +   LL  M + GC P++ TY  ++EG+C   K++EA K LEEM  +GY PD+VT
Sbjct: 125 AERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVT 184

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN F+K LC     DEA +   RM      P V +Y  +I+   + G+ D A      M 
Sbjct: 185 YNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            RGC  DV TY  +IDG     +VE A  LL+ ++  G +     ++S L  L  +G +G
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 301

Query: 465 AIHKLSDHM-RKFYNP 479
               +   M R+ + P
Sbjct: 302 KAEDMLVEMERRGFTP 317



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 136/333 (40%), Gaps = 79/333 (23%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
            K   E +K    P +     ++D LCK      A  +   +++K   PN  TYN++   
Sbjct: 97  FKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEG 156

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + LEEM   G+ PD  TYN+ I   CK   V EA      M        
Sbjct: 157 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV------ 210

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   +Y  +I  L ++  ++    +L HM N GC PDV TY  +++G C  G+VE A  
Sbjct: 211 TPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMG 270

Query: 329 FLE-----------------------------------EMGNKGYPPDIVTYNCFLKVLC 353
            L+                                   EM  +G+ PD+V+YN  +  LC
Sbjct: 271 LLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLC 330

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +   +A  ++ RM+E GC P+  +Y+MLI                          D+ 
Sbjct: 331 KAERVKKAKAVFDRMVERGCTPNASSYSMLIV-------------------------DIL 365

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            Y V++DGL    + +EAC L  +V+++ +  P
Sbjct: 366 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEP 398



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 14/250 (5%)

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           MG+  + FTYN  +    +     +A+ +F+ M  K      P A T+AI++  L ++++
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSC---QPDAFTFAILLRGLCRSNQ 57

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   LLG M   GC+PD + Y  ++ G   A    +A+KFL EM      P +VTY  
Sbjct: 58  LEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTN 117

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC  +   +A++L   M + GC P++ TYN+++    E  + D A +   EM  RG
Sbjct: 118 IVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 177

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR----KFDSYLMQLSVIGDL 463
              DV TY   I GL  C +V+EA   L        ++P       + + +  L   GDL
Sbjct: 178 YFPDVVTYNSFIKGLCKCDRVDEARKFLA-------RMPVTPDVVSYTTVINGLCKSGDL 230

Query: 464 GAIHKLSDHM 473
            +  ++ DHM
Sbjct: 231 DSASRMLDHM 240



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 35/307 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN-ILGM-----------QT 221
           P++   + L+D  CK G V+ A  +    +K   +PN   YN +LG              
Sbjct: 247 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDM 306

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV- 280
           L EM + G  PD  +YN  ID  CKA  V +A  +F+ M  +G T   P A +Y+++IV 
Sbjct: 307 LVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCT---PNASSYSMLIVD 363

Query: 281 ---------ALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
                     L +  R +E  +L   +++   C PDV  Y  +L+  C   ++++A +  
Sbjct: 364 ILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIH 423

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           ++M  K    ++VT+N  +  LC +    +A  +   M++ G  P   TY  L+    + 
Sbjct: 424 KQMLEKNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKC 482

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV-------NKGL 443
           G+   A E + E  K GC  DV TY  +I GL   +  EEA  L  ++V       +K L
Sbjct: 483 GKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTL 542

Query: 444 KLPYRKF 450
            L +RK 
Sbjct: 543 GLLHRKL 549



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 28/297 (9%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           ++   P++ +   +++ LCK G +D A  +   + N+   P+  TY+ L           
Sbjct: 207 RMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVE 266

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             M  L+ M+++G  P+   YN+ +    +   + +A D+   M  +G T   P   +Y 
Sbjct: 267 RAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFT---PDVVSYN 323

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV----------LEGMCLAGKVEEA 326
             I  L + +R+++  ++   M+  GC P+ S+Y  +          L+G+C  G+ +EA
Sbjct: 324 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEA 383

Query: 327 YK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
              F + +  K   PD+  YN  L   C  +  D+AL+++ +M+E  C  +V T+N+L+ 
Sbjct: 384 CALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVH 442

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
                     A      M   G   D  TY  ++D +  C K   A  L EE V  G
Sbjct: 443 GLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGG 499



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 15/148 (10%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           +P++   N++LD+ CK   +D A  I K++  K   N  T+NIL                
Sbjct: 397 EPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETM 456

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M+  G  PD  TY T +D  CK      A +LFE    KG  +  P   TY+ +I  
Sbjct: 457 LLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFE-EAVKGGCV--PDVVTYSALITG 513

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVST 309
           LV  +  EE + L   ++    +PD  T
Sbjct: 514 LVHENMAEEAYLLFTKLVERRWVPDDKT 541


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 161/323 (49%), Gaps = 25/323 (7%)

Query: 167  EKIKVKTQPEINALNLLLDALCKCGLVDYAETI----CKRVKNKVKPNANTYNIL----- 217
            E +     P++   N L+D+LCK G ++ A  +      RV     PN  TY++L     
Sbjct: 732  EMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLC 791

Query: 218  -------GMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     + ++EM++      P+  TYN+ +D  CK  M+ EA +L   +R  GS   
Sbjct: 792  KVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLR-DGSLRV 850

Query: 269  SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            SP   T++ +I  L +  + +E  ++   MI  G +P+V TY  ++ G+C   K+E A+ 
Sbjct: 851  SPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHA 910

Query: 329  FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +E M +KG  PD++TY+  +   C   + DEAL L   M   GC P+V T+N +I    
Sbjct: 911  MIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLC 970

Query: 389  ELGEPDGAFETWHEMD-KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            +  +   AF+ + +M  K G A D  TYC +IDGLF      +A  LL+ + +       
Sbjct: 971  KSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDP----DT 1026

Query: 448  RKFDSYLMQLSVIGDLG-AIHKL 469
              F+  +  LS +GD+  A+H++
Sbjct: 1027 YAFNCCINGLSKLGDVSRALHRM 1049



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 163/328 (49%), Gaps = 21/328 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++ + E ++    P++   N L+D+LCK G ++ A  +   + ++   PN  TY++L   
Sbjct: 236 MELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLING 295

Query: 218 ---------GMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      + ++EM +      P+  TYN+ +D  CK  M  EA +L   +R  GS 
Sbjct: 296 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR-DGSL 354

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             SP   T++ +I  L +  +++E  S+   MI  G +P+V TY  ++ G+C A K+E A
Sbjct: 355 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA 414

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           +  +E M +KG  PD++TY+  +   C     DEAL L   M   GC P+V T+N +I  
Sbjct: 415 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 474

Query: 387 YFELGEPDGAFETWHEMD-KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             +      AF+ + +M  K G   D  TYC +IDGLF   +  +A  LL+ + +     
Sbjct: 475 LCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDP---- 530

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
               F+  +  LS +GD+    ++ + M
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRM 558



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 182/413 (44%), Gaps = 30/413 (7%)

Query: 87  VLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK 146
           +L +     ++  +F+ WA     + H   ++N  +++L  +   AK   L  S L    
Sbjct: 83  ILAQLDGNAELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRC 142

Query: 147 RNNKVFVPVDVLLMILKQYTEKIKV--------KTQPEINALNLLLDALCKCGLVDYAET 198
           R N  F    +L    K   +  +          +   +   N++L +LC+ G    A  
Sbjct: 143 RPNH-FTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALE 201

Query: 199 ICKR--VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTF 244
           I +    ++ V P   TYN +            GM+  EE+++ GH PD  TYNT ID+ 
Sbjct: 202 IFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSL 261

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC- 303
           CKA  + EA  L   M ++      P   TY+++I  L +  R++E   L+  M    C 
Sbjct: 262 CKAGDLEEARRLHGDMSSRSCV---PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 318

Query: 304 -LPDVSTYKEVLEGMCLAGKVEEAYKFLEEM--GNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            LP++ TY   L+G+C      EA + +  +  G+    PD VT++  +  LC     DE
Sbjct: 319 VLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDE 378

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  ++  MI  G  P+V TYN L++   +  + + A      M  +G   DV TY V++D
Sbjct: 379 ACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVD 438

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                S+V+EA  LL  + ++G       F+S +  L      G   ++ D M
Sbjct: 439 AFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDM 491



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 214/515 (41%), Gaps = 62/515 (12%)

Query: 1   MTLAHLVSPTEAQYAVLV----RVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYE 56
           M L H + P +  Y  L+    R  R    ++ +  +P      F+   + +S +  +  
Sbjct: 491 MALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSR 550

Query: 57  AIIDNSNAYDNMEKALDSLGVPLTTDSVV------GVLQRFQFEEKIAFRFFMWAGHQDN 110
           A+      Y+ M      L + L  D V       G  +   FE+  A    M A    N
Sbjct: 551 AL----QVYNRM------LELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA---KN 597

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM---------- 160
              + + +  +ID L     KA Q      +LD M     + VP +V+            
Sbjct: 598 LQPDVMTFGALIDGLC----KAGQVEAARDILDLM---GNLGVPPNVVTYNALVHGLCKS 650

Query: 161 -----ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTY 214
                  +   E +     P+      L+ ALC+    D A  +   +K+    P+  TY
Sbjct: 651 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 710

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           NIL             +  LEEM+  GH PD  TYNT ID+ CKA  + EA  L   M +
Sbjct: 711 NILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS 770

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPDVSTYKEVLEGMCLA 320
           + S    P   TY+++I  L +  R++E   L+  M+   C  LP++ TY   L+G+C  
Sbjct: 771 RVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQ 830

Query: 321 GKVEEAYKFLEEM--GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             + EA + +  +  G+    PD VT++  +  LC     DEA  ++  MI  G  P+V 
Sbjct: 831 SMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVV 890

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TYN+L++   +  + + A      M  +G   DV TY V++D     S V+EA  LL  +
Sbjct: 891 TYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGM 950

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            ++G       F+S +  L      G   ++ D M
Sbjct: 951 ASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDM 985



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 146/341 (42%), Gaps = 42/341 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   ++L+DA CK   VD A E +         PN  T+N +              Q 
Sbjct: 428 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQM 487

Query: 222 LEEM-IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR--------------TKGST 266
            ++M ++ G  PD  TY T ID   +     +A  L + M               +K   
Sbjct: 488 FDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGD 547

Query: 267 ISS--------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           +S               P   T+ I+I    +    E+  +L   M+     PDV T+  
Sbjct: 548 VSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 607

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++G+C AG+VE A   L+ MGN G PP++VTYN  +  LC +   +EA +    M+  G
Sbjct: 608 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG 667

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C P   TY  L+         D A +   E+   G   D  TY +++DGL+   + E+A 
Sbjct: 668 CVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAI 727

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            +LEE+V KG       +++ +  L   GDL    +L   M
Sbjct: 728 TVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 768



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 146/338 (43%), Gaps = 51/338 (15%)

Query: 175  PEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNILGMQTLEEMIQMGHA 231
            P +   ++L++ LCK G +D A  + + +  K   V PN  TYN   +  L +   M  A
Sbjct: 778  PNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSF-LDGLCKQSMMAEA 836

Query: 232  ---------------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                           PD  T++T ID  CK     EA ++F+ M   G     P   TY 
Sbjct: 837  CELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYV---PNVVTYN 893

Query: 277  IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +++  L + D+ME   +++  M++ G  PDV TY  +++  C A  V+EA + L  M ++
Sbjct: 894  VLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASR 953

Query: 337  GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELG---- 391
            G  P++VT+N  +  LC +    EA +++  M ++ G  P   TY  LI   F  G    
Sbjct: 954  GCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQ 1013

Query: 392  ---------EPDG-AF--------------ETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
                     +PD  AF                 H M +     D  T+ ++I G      
Sbjct: 1014 AEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGN 1073

Query: 428  VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
             E+A  L EE+V K L+     F + +  L   G + A
Sbjct: 1074 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 1111



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 129/274 (47%), Gaps = 24/274 (8%)

Query: 170  KVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL----------- 217
             ++  P+    + L+D LCKCG  D A  +    +     PN  TYN+L           
Sbjct: 847  SLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKME 906

Query: 218  -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                 +E M+  G  PD  TY+  +D FCKA  V EA +L   M ++G T   P   T+ 
Sbjct: 907  RAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCT---PNVVTFN 963

Query: 277  IMIVALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L ++D+  E F +   M +  G  PD  TY  +++G+   G   +A   L+ M +
Sbjct: 964  SIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD 1023

Query: 336  KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
                PD   +NC +  L  +K GD +  L+ RM+E+   P   T+N+LI+   + G  + 
Sbjct: 1024 ----PDTYAFNCCINGL--SKLGDVSRALH-RMLELELVPDKVTFNILIAGACKAGNFEQ 1076

Query: 396  AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
            A   + EM  +    DV T+  +IDGL    +VE
Sbjct: 1077 ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 147/303 (48%), Gaps = 21/303 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+    N L+  LC  G +  A     K +    +P+  TY  L          
Sbjct: 212 LKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNT 271

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M+Q    P+   YNT ID+ CK R VTEA +LF  M TKG    SP   TY
Sbjct: 272 SAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGI---SPDIFTY 328

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I AL      +   +LL  M+NS  +P+V  +  V++ +C  G +  A+  ++ M  
Sbjct: 329 NSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIK 388

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  PD+VTY   +   C     DEA++++  M+  GC P+V++YN+LI+ Y ++   D 
Sbjct: 389 RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDK 448

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A     +M  +G   D  TY  +I GL    +++ A  L  E+V  G ++P    YR   
Sbjct: 449 AMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG-QIPDLVTYRILL 507

Query: 452 SYL 454
            YL
Sbjct: 508 DYL 510



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 161/358 (44%), Gaps = 24/358 (6%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVFVPVDV--LL 159
           Q N     +AYN +ID L   +   + F L   M+      D    N+ +    ++    
Sbjct: 283 QKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWK 342

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL- 217
            +     E +  K  P +   + ++DALCK G++  A  +    +K  V+P+  TY  L 
Sbjct: 343 HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 402

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++  + M+  G  P+  +YN  I+ +C+ + + +A  L E M  +G  
Sbjct: 403 DGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLI 462

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             + T   Y  +I  L    R++   +L   M+ SG +PD+ TY+ +L+ +C    + EA
Sbjct: 463 ADTVT---YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEA 519

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
              L+ +       DI+ YN  +  +C     + A  L+  +   G  P V+TYN++I  
Sbjct: 520 MVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHG 579

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + G  D A + + +MD+ GC++D   Y  +I G    ++   A  LL+E++ +G  
Sbjct: 580 LCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFS 637



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 4/267 (1%)

Query: 209 PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           P+ NT +   + +   M+ M   P    +   + +  K +  +    L   M + G    
Sbjct: 126 PHFNTLDD-ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGI--- 181

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   T  I+I +     R+   FS+L  ++  GC PD +T+  ++ G+C+ GK+ EA  
Sbjct: 182 PPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALH 241

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++   +G+ PD+VTY   +  LC   N   A+RL   M++  C P+V  YN +I    
Sbjct: 242 LFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLC 301

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           +  +   AF  + EM  +G + D+ TY  +I  L +  + +    LL E+VN  +     
Sbjct: 302 KDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVV 361

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            F + +  L   G +   H + D M K
Sbjct: 362 VFSTVVDALCKEGMIAIAHDVVDMMIK 388



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 106/263 (40%), Gaps = 38/263 (14%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M   G  PD +T N  I++FC  R +  A  +   +   G     P   T+  +I  L 
Sbjct: 175 QMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGC---QPDNTTFNTLIRGLC 231

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              ++ E   L    I  G  PDV TY  ++ G+C  G    A + L  M  K   P+++
Sbjct: 232 VEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVI 291

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE----------- 392
            YN  +  LC ++   EA  L+  MI  G  P + TYN LI     L E           
Sbjct: 292 AYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 351

Query: 393 --------------------PDGAFETWHE----MDKRGCAQDVDTYCVMIDGLFDCSKV 428
                                +G     H+    M KRG   DV TY  ++DG    S++
Sbjct: 352 VNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEM 411

Query: 429 EEACFLLEEVVNKGLKLPYRKFD 451
           +EA  + + +V+KG     R ++
Sbjct: 412 DEAVKVFDTMVHKGCVPNVRSYN 434



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 20/250 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P + + N+L++  C+   +D A  + +++    +  +  TYN L             +  
Sbjct: 428 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 487

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+  G  PD  TY   +D  CK   + EA  L + +  +GS + +     Y I I  
Sbjct: 488 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI--EGSNLDADIL-VYNIAIDG 544

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +   +E    L  ++ + G  PDV TY  ++ G+C  G ++EA K   +M   G   D
Sbjct: 545 MCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRD 604

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  ++    +     A +L   M+  G    V T  +++ M  +    DG  +++ 
Sbjct: 605 GCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSD----DGLDQSFE 660

Query: 402 EMDKRGCAQD 411
            +  RG  ++
Sbjct: 661 RLRLRGVGEE 670


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 178/396 (44%), Gaps = 37/396 (9%)

Query: 73  DSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKA 132
           D  G+ LT + V  +L +F  + K A  FF WA  +D+Y H   A N M+D+L   +   
Sbjct: 40  DCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQID 99

Query: 133 KQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------QPEINA 179
           + + L+  M      + +  V V+ +   +++     + K              +     
Sbjct: 100 QMWELLSDM------HGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTET 153

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           +N+LLD LCK   ++ A  +   +   + P+A T+NI              M T+EEM +
Sbjct: 154 MNVLLDVLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKR 213

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  P   TY T ++ +CK R       ++E + + GS    P   TY +++ +L + +R
Sbjct: 214 RGFPPSVITYTTVLEAYCKQRNFRR---VYEVLDSMGSQGCHPNVITYTMIMTSLAKCER 270

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYN 346
            EE  S+   M +SGC PD   Y  ++  +  +G + EA + F  EM   G   ++ TYN
Sbjct: 271 FEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYN 330

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEPDGAFETWHEM-D 404
             + + C     D+AL +   M    C P +Q+Y  L+ ++    G+ D       E+  
Sbjct: 331 TMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTS 390

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           K     D+DTY ++I GL        A  L +E+V+
Sbjct: 391 KHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 426



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P +    +++ +L KC   + A ++  R+K+   KP+   YN L              Q
Sbjct: 252 HPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQ 311

Query: 221 TLEEMIQMGHAPDNF-TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
                + M     N  TYNT I  FC      +A ++ + M  +      P  ++Y  ++
Sbjct: 312 VFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSC---KPDIQSYRPLL 368

Query: 280 VALV----QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
              +    Q D +    S L    N G   D+ TY  ++ G+C  G    AY+  +EM +
Sbjct: 369 RLFLSRRGQADTVRHLLSELTSKHNLGL--DLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 426

Query: 336 KGYPP 340
               P
Sbjct: 427 SEIAP 431


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 157/331 (47%), Gaps = 26/331 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------GMQTLEEM 225
           P +    +L+D+ CK GL+  A      + +K   PN  TY  L         M   +E+
Sbjct: 493 PSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADEL 552

Query: 226 IQM----GHAPDNFTYNTAIDTFCKARMV-------------TEAADLFEFMRTKGSTIS 268
            +M    G  P+  TY   ID  CKA  +              E++D+ ++ +   +   
Sbjct: 553 FEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCE 612

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  ++  L + +R++E   LL  M+  GC P+   Y  V++G C  GK+++A +
Sbjct: 613 GPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQE 672

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M  +GY P++ TY+ F+  L  +   D  L++  +M+E  C P+V  Y  ++    
Sbjct: 673 VFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLC 732

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+ D A++   +M+++GC  +V TY  MIDG     K+E+   L  ++ +KG    + 
Sbjct: 733 KIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFI 792

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +   +      G L   +KL D M++ Y P
Sbjct: 793 TYRVLINHCCSNGLLDEAYKLLDEMKQTYWP 823



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 129/278 (46%), Gaps = 32/278 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-----------------PNANTYNI 216
           +P +     L+D  CK G ++ A  I  R++  ++                 PN  TY  
Sbjct: 562 KPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGA 621

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L              + L+ M+  G  P+   Y+  ID FCK   + +A ++F  M  +G
Sbjct: 622 LVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERG 681

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP   TY+  I  L +++R++    +L  M+ + C P+V  Y E+++G+C  GK +
Sbjct: 682 Y---SPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTD 738

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EAYK + +M  KG  P++VTY   +     +   ++ L L+  M   GC P+  TY +LI
Sbjct: 739 EAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLI 798

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +     G  D A++   EM +    + + ++  +I+G 
Sbjct: 799 NHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF 836



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 134/309 (43%), Gaps = 51/309 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    N ++  LC+  L + A  I  R+++    PN  TY IL              + 
Sbjct: 277 PDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRI 336

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE----------------FMRTKGS 265
           L  MI  G  P+   +N+ I  +CK+R  + A  LF+                F+ +  S
Sbjct: 337 LSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCS 396

Query: 266 TISSPTA-------KTYAIMI-VALVQND--------------RMEECFSLLGHMINSGC 303
               P++       K Y+ M+ + +V N               + ++ F ++  M+  G 
Sbjct: 397 NEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGF 456

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +PD STY +V+  +C A KVE+A+   EEM   G  P + TY   +   C      +A +
Sbjct: 457 VPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARK 516

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
            +  M+  GC P+V TY  LI  Y +  +   A E +  M   GC  +V TY  +IDG  
Sbjct: 517 WFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHC 576

Query: 424 DCSKVEEAC 432
              ++E+AC
Sbjct: 577 KAGQIEKAC 585



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 159/402 (39%), Gaps = 84/402 (20%)

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           ++  +FF+WAG Q  Y+H P  ++ ++D+L             C++      N    VP+
Sbjct: 120 ELCVKFFLWAGRQIGYSHTPQVFDKLLDLLG------------CNV------NADDRVPL 161

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTY 214
             L+ I     E ++         LN L+   C+ G  + A     R+K+   KP+  TY
Sbjct: 162 KFLMEIKDDDHELLR-------RLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTY 214

Query: 215 NILGMQTLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L    L             EM+      D +T +    + CK     EA DL +    
Sbjct: 215 NALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLID---- 270

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
             +    P    Y  M+  L +    EE   +L  M +S C+P+V TY+ +L G    G+
Sbjct: 271 -EAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQ 329

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +    + L  M  +G  P+   +N  +   C +++   A +L+ +MI+ GC P    YN+
Sbjct: 330 LGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNI 389

Query: 383 LIS-------------------MYFEL----------------------GEPDGAFETWH 401
            I                     Y E+                      G+ D AF+   
Sbjct: 390 FIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIIC 449

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +G   D  TY  +I  L D SKVE+A  L EE+   G+
Sbjct: 450 EMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGI 491



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 145/341 (42%), Gaps = 39/341 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNI----------------- 216
           P     N L+ A CK     YA  + K+ +K   +P    YNI                 
Sbjct: 347 PNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDIL 406

Query: 217 -LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
            L  +   EM+ +G   +    +      C A    +A  +   M  KG     P   TY
Sbjct: 407 DLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFV---PDDSTY 463

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L    ++E+ FSL   M  +G +P V TY  +++  C AG +++A K+ +EM +
Sbjct: 464 SKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLH 523

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG  P++VTY   +      K    A  L+  M+  GC P+V TY  LI  + + G+ + 
Sbjct: 524 KGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEK 583

Query: 396 AFETWHEM---------------DKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M               D   C   +V TY  ++DGL   ++V+EA  LL+ ++
Sbjct: 584 ACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTML 643

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
             G +     +D+ +     IG L    ++   M  + Y+P
Sbjct: 644 AHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSP 684



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+  TY  +I   ++ D+++  + +   M++   + D  T       +C  GK  EA+  
Sbjct: 209 PSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDL 268

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           ++E   + + PD V YN  +  LC+    +EA+ +  RM    C P+V TY +L+S    
Sbjct: 269 IDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLR 326

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G+          M   GC  + + +  +I           A  L ++++  G +  Y  
Sbjct: 327 KGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLV 386

Query: 450 FDSYL 454
           ++ ++
Sbjct: 387 YNIFI 391



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 127/309 (41%), Gaps = 52/309 (16%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S +D + ++N++    D++L +L +  E       P +     ++D LCK G  D A  +
Sbjct: 691 SFIDCLFKDNRL----DLVLKVLSKMLEN---SCTPNVVIYTEMVDGLCKIGKTDEAYKL 743

Query: 200 CKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
             +++ K                      G  P+  TY   ID F K+  + +  +LF  
Sbjct: 744 MLKMEEK----------------------GCNPNVVTYTAMIDGFGKSGKIEQCLELFRD 781

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M +KG    +P   TY ++I     N  ++E + LL  M  +     + ++++++EG   
Sbjct: 782 MCSKG---CAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEG--F 836

Query: 320 AGKVEEAYKFLEEMG-NKGYPPDIVTYNCFLKVLCDN--KNG--DEALRLYGRMIEVGCW 374
           + +   +   L+E+  N+  P D        ++L DN  K G  + AL L   + E+   
Sbjct: 837 SQEFITSIGLLDELSENESVPVD-----SLYRILIDNYIKAGRLEVALDL---LEEISSS 888

Query: 375 PSVQT-----YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           PS        Y  LI       + D A E +  M  +    ++     +I GL    K +
Sbjct: 889 PSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDKWQ 948

Query: 430 EACFLLEEV 438
           EA  L + +
Sbjct: 949 EALQLSDSI 957


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 179/414 (43%), Gaps = 74/414 (17%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV-------CS--------- 140
           +A +FF WAG QD Y H+  +YN ++DIL  + ++ +  ++        CS         
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKIL 68

Query: 141 ------------MLDYMKRNNKVFVPVDVLLM---------------ILKQYTEKIKVKT 173
                        L++++  ++  V  DV +                 +K +      + 
Sbjct: 69  IRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRV 128

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK---RVKNKVKPNANTYNIL------------- 217
            P+I   N ++  LCK G ++ A  + +   R   K  P+  TYN L             
Sbjct: 129 NPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEE 188

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L+ M   G APD  TYN+ I   C A  V EAA++ + M        SP   T+  
Sbjct: 189 ALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSC------SPDLVTFNT 242

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++    +   +     +L  M     LPDV TY  ++ G+C  G+V+ A+  LEE+  +G
Sbjct: 243 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 302

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRL---------YGRMIEVGCWPSVQTYNMLISMYF 388
           Y PD++ Y   +  LC +   +EA +L            M+ +   P + TYN+++    
Sbjct: 303 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLI 362

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + G    A     ++  RG   DV TY  +IDGL   ++V EAC L +E+ + G
Sbjct: 363 KDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLG 416



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 132/292 (45%), Gaps = 20/292 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++   N LLD  CK G++  A E + +  +  + P+  TY IL               
Sbjct: 234 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 293

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------STISSPTAKT 274
            LEE+++ G+ PD   Y + +D  CK+  + EA  L + M  +       S    P   T
Sbjct: 294 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFT 353

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y I++  L+++  + +  SL+  ++  G +PDV TY  +++G+C A +V EA    +EM 
Sbjct: 354 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 413

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           + G  P+ VT    +  LC     D+A  L   M      P+V  Y  LI    +    D
Sbjct: 414 SLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMD 473

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            A      M  +G A D   Y  +I  +    +V EA  + +E+V +G  LP
Sbjct: 474 DACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGF-LP 524



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 21/261 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++ A   L+D LCK G ++ A  + K +  +             + L EM+ +   P  
Sbjct: 305 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAR-------------EILAEMVSINMVPPL 351

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           FTYN  +    K   +++A  L   +  +G     P   TY  +I  L + +R+ E   L
Sbjct: 352 FTYNIVLGGLIKDGSISKAVSLISDLVARGYV---PDVVTYNTLIDGLCKANRVREACDL 408

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M + GC P+  T   V+ G+C  G+V++A+  + EM  K + P++V Y   +  LC 
Sbjct: 409 ADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCK 468

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           +   D+A  +   M   G       Y  LI      G    A   + EM  RG   D  T
Sbjct: 469 SDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGST 528

Query: 415 Y-----CVMIDGLFDCSKVEE 430
                   M + +F+ + +EE
Sbjct: 529 SKTLEEAAMSNSVFEWTNLEE 549



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 3/167 (1%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           +++SGC P++ T+K ++ G C AG+   A +FL  +      PD+  +N  +  L  + N
Sbjct: 53  LLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGN 112

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG--CAQDVDTY 415
            D+A++L+  M      P + TYN +IS   + G  + A E   EM +RG   A D+ TY
Sbjct: 113 PDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTY 172

Query: 416 CVMID-GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
             +I+ G+     VEEA  +L+ +   G       ++S +  L V G
Sbjct: 173 NTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAG 219



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%)

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           DV +Y  +L+ +  +G      K  +++ + G  P++VT+   ++  C       AL   
Sbjct: 26  DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFL 85

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             + E    P V  +N LI   F+ G PD A + +  M+      D+ TY  +I GL   
Sbjct: 86  RALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKS 145

Query: 426 SKVEEACFLLEEVVNKGLK 444
             +E+A  LLEE++ +G K
Sbjct: 146 GNLEKARELLEEMIRRGGK 164



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A +F +  G + GY  D+ +YN  L +L  + +     ++Y  ++  GC P++ T+ +LI
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILI 69

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               + G+   A E    +D+   A DV  +  +I GLF     ++A  L E + +  + 
Sbjct: 70  RGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVN 129

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +++ +  L   G+L    +L + M
Sbjct: 130 PDIFTYNTVISGLCKSGNLEKARELLEEM 158


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 149/334 (44%), Gaps = 52/334 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N+L+   CK G +D A  +  R+   V P+  TYN +             M+ L
Sbjct: 125 PDVITYNVLISGYCKSGEIDNALQVLDRMN--VAPDVVTYNTILRTLCDSGKLKQAMEVL 182

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +  +Q    PD  TY   I+  CK   V +A  L + MR KGS    P   TY ++I  +
Sbjct: 183 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS---KPDVVTYNVLINGI 239

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R++E    L +M + GC P+V T+  +L  MC  G+  +A K L +M  KG  P +
Sbjct: 240 CKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSV 299

Query: 343 VTYNCFLKVL-----------------------------------CDNKNGDEALRLYGR 367
           VT+N  +  L                                   C  K  D A+     
Sbjct: 300 VTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDI 359

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+  GC+P + TYN L++   + G+ D A E  +++  +GC+  + TY  +IDGL    K
Sbjct: 360 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 419

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            E A  LL+E+  KGLK     + S +  LS  G
Sbjct: 420 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 453



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 20/313 (6%)

Query: 162 LKQYTEKIKVKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           LKQ  E +  + Q    P++    +L++A CK   V  A  +   ++NK  KP+  TYN+
Sbjct: 175 LKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNV 234

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             ++ L  M   G  P+  T+N  + + C      +A  L   M  KG
Sbjct: 235 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 294

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP+  T+ I+I  L +   +     +L  M   GC P+  +Y  +L G C   K++
Sbjct: 295 C---SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMD 351

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A ++L+ M ++G  PDIVTYN  L  LC +   D A+ +  ++   GC P + TYN +I
Sbjct: 352 RAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVI 411

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               ++G+ + A +   EM ++G   D+ TY  ++ GL    KV+EA     ++   G++
Sbjct: 412 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR 471

Query: 445 LPYRKFDSYLMQL 457
                ++S ++ L
Sbjct: 472 PNAITYNSIMLGL 484



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   N++L ++C  G  +D  + +   ++    P+  T+NIL             + 
Sbjct: 261 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID 320

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M   G  P++ +YN  +  FCK + +  A +  + M ++G     P   TY  ++ 
Sbjct: 321 ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY---PDIVTYNTLLT 377

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ +++    +L  + + GC P + TY  V++G+   GK E A K L+EM  KG  P
Sbjct: 378 ALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKP 437

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  +  L      DEA++ +  +  +G  P+  TYN ++    +  + D A +  
Sbjct: 438 DIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFL 497

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M  + C     TY ++I+G+      +EA  LL E+ ++GL
Sbjct: 498 AYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GM 219
           ++P++   N+L++ +CK G +D A      + +   +PN  T+NI+              
Sbjct: 225 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAE 284

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + L +M++ G +P   T+N  I+  C+  ++  A D+ E M   G T   P + +Y  ++
Sbjct: 285 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCT---PNSLSYNPLL 341

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +  +M+     L  M++ GC PD+ TY  +L  +C  GKV+ A + L ++ +KG  
Sbjct: 342 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 401

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P ++TYN  +  L      + A++L   M   G  P + TY+ L+S     G+ D A + 
Sbjct: 402 PVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF 461

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +H+++  G   +  TY  ++ GL    + + A   L  +++K  K
Sbjct: 462 FHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCK 506



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +E + Q G  PD  TYN  I  +CK+  +  A  + + M        +P   TY  ++  
Sbjct: 115 MEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNV------APDVVTYNTILRT 168

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  + ++++   +L   +   C PDV TY  ++E  C    V +A K L+EM NKG  PD
Sbjct: 169 LCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 228

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +  +C     DEA++    M   GC P+V T+N+++      G    A +   
Sbjct: 229 VVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLS 288

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +M ++GC+  V T+ ++I+ L     +  A  +LE++   G
Sbjct: 289 DMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 329



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+N  +E+ F  L  M+  G +PD+     ++ G C  GK ++A   +E +   G  PD
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +   C +   D AL++  RM      P V TYN ++    + G+   A E   
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              ++ C  DV TY ++I+     S V +A  LL+E+ NKG K
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSK 226


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 201/470 (42%), Gaps = 44/470 (9%)

Query: 12  AQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKA 71
           A  A+ +R++ T ++      +P  +       S +  ++A+L   ++ + N +   E  
Sbjct: 12  AARAIAIRMLSTNTVPVEAASLPHTLALPPIAPSPAADELARL---LLAHHNPFHPAESP 68

Query: 72  LDSL---GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAH-EPL--AYNLMIDIL 125
           L  L   GV L+ D +V +L R +   K+A      A    ++ + +P   AY+ ++D L
Sbjct: 69  LQLLSGGGVSLSGDLLVQILLRLRGASKLALSLLHAARLHPSFVNTQPRSDAYDAVVDAL 128

Query: 126 SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIK--------VKTQPEI 177
              +     +R+V         + + F  +    +      + I+        V  +P+ 
Sbjct: 129 GRARQFDAAWRVVVDASADGAASPRTFAVLARRYVAAGMTRQAIRAFDDMEAFVSREPDA 188

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
                LLD LCK      A  +  + K K  PN   Y+IL              + L++M
Sbjct: 189 AEFATLLDTLCKYKYPKVATEVFNKRKYKYGPNEKMYSILIYGWCKVNRSDMAKKFLKDM 248

Query: 226 IQMGHAPDNFTYNTAIDTFCKA----------RMVTEAADLFEFMRTKGSTISSPTAKTY 275
           +  G  P+  TYN  ++  C+           R V  A DL + MR +G     P   +Y
Sbjct: 249 LVHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRGRGI---EPDVTSY 305

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I++    +  + E C  +   M   G  P V+TY  V++ +   G++E+    L+EM  
Sbjct: 306 SIILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVA 365

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW--PSVQTYNMLISMYFELGEP 393
           +G  P   TYNCFLK     K+   AL LY +M   G    P + TYN+L+ M+ +L   
Sbjct: 366 EGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKAPGSLTAPDIHTYNILLGMFSKLNRH 425

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               + W +M +     D+D+Y ++I    D  K  EAC    E++ KG 
Sbjct: 426 GTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWREACQFFMEMIEKGF 475



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 128/327 (39%), Gaps = 62/327 (18%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------GM--QT 221
           V TQP  +A + ++DAL +    D A  +          +  T+ +L       GM  Q 
Sbjct: 112 VNTQPRSDAYDAVVDALGRARQFDAAWRVVVDASADGAASPRTFAVLARRYVAAGMTRQA 171

Query: 222 LEEMIQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           +     M       PD   + T +DT CK +    A ++F   + K      P  K Y+I
Sbjct: 172 IRAFDDMEAFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRKYK----YGPNEKMYSI 227

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I                                    G C   + + A KFL++M   G
Sbjct: 228 LIY-----------------------------------GWCKVNRSDMAKKFLKDMLVHG 252

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALR----------LYGRMIEVGCWPSVQTYNMLISMY 387
             P+IVTYN  L  +C + +     R          L   M   G  P V +Y++++ +Y
Sbjct: 253 IEPNIVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRGRGIEPDVTSYSIILHVY 312

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
               +P+     +  M +RG    V TY  +I  L  C ++E+   LL+E+V +G+    
Sbjct: 313 SRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVAEGVCPSP 372

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             ++ +L +     D+ A  +L + M+
Sbjct: 373 ATYNCFLKEYRGRKDVTAALELYNKMK 399



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM+  G  P   TYN  +  +   + VT A +L+  M+  GS +++P   TY I++  
Sbjct: 360 LDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKAPGS-LTAPDIHTYNILLGM 418

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + +R      +   M  S   PD+ +Y  ++   C + K  EA +F  EM  KG+ P 
Sbjct: 419 FSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWREACQFFMEMIEKGFLPQ 478

Query: 342 IVTYNCFLKVL 352
            +T+    + L
Sbjct: 479 KITFETLYRGL 489


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 28/310 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-------------------ETICKRVKNKV 207
           E +     P+    + L+D LCK G  + A                   ETI +R+ NK 
Sbjct: 151 EMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKY 210

Query: 208 KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                   +LG+     +I  G  P    +N  I+ FCKA+ +  A  L E M  KG   
Sbjct: 211 NSVELASKVLGV-----VIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCV- 264

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+ I+I  L + +R+ E   LL  M+  GC P+V TY  V+ G+C  G+V++AY
Sbjct: 265 --PNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAY 322

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  + M  +  PP++VT+N  +  LC  K  +EA +LY RM E GC P + TYN LI   
Sbjct: 323 ELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 382

Query: 388 FELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            +  + D AF+ +  + + G  A +  TY  +  G     ++ +AC +   +V+KG    
Sbjct: 383 CKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD 442

Query: 447 YRKFDSYLMQ 456
              + S +++
Sbjct: 443 LATYTSLILE 452



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P++     L+ ALCK G  D A+ + +  V     P+  T++ L              + 
Sbjct: 124 PDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRV 183

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           LE++IQ G    +  + T I   C K   V  A+ +   +  KG T   PT   + ++I 
Sbjct: 184 LEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFT---PTVLMFNLVIN 240

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   ++  + LL  MI  GC+P+V T+  ++ G+C A +V EA + LE+M   G  P
Sbjct: 241 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSP 300

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTY+  +  LC     D+A  L+  M    C P+V T+N+LI    +    + A + +
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 360

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           H M + GCA D+ TY  +IDGL    +V+EA  L + +   G+
Sbjct: 361 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 403



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 52/316 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P +   NL+++  CK   +D A  + +  ++    PN  T+ IL              Q 
Sbjct: 230 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 289

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE+M+  G +P+  TY+T I+  CK   V +A +LF+ M  +      P   T+ I+I  
Sbjct: 290 LEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNC---PPNVVTHNILIDG 346

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE---EMG---- 334
           L +  R+EE   L   M  +GC PD+ TY  +++G+C + +V+EA++  +   E G    
Sbjct: 347 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 406

Query: 335 -----------------------------NKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                                        +KG+ PD+ TY   +   C      E + L 
Sbjct: 407 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 466

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M   G  P V T + ++   FE    + A + +  M  RGC  D   Y ++++G+   
Sbjct: 467 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 526

Query: 426 SKVEEACFLLEEVVNK 441
           SK ++A  +LE+V++K
Sbjct: 527 SKHDKALAVLEQVIDK 542



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 18/276 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQTLEEMIQ 227
           N  LD LC+      A  + +    ++  PN  TY IL             +Q LEEM  
Sbjct: 26  NCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKS 85

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G   +   + T +   C A  V EA + F  M    +   +P   TY  ++ AL +  +
Sbjct: 86  SGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM----AKDCAPDVMTYTALVHALCKAGK 141

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E   +L  M+  GC PD  T+  +++G+C  G  E+A++ LE++  +G       +  
Sbjct: 142 FDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFET 201

Query: 348 FLKVLCDNKNGDE-ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
            ++ LC+  N  E A ++ G +I  G  P+V  +N++I+ + +  + D A++    M ++
Sbjct: 202 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK 261

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           GC  +V T+ ++I GL   ++V EA  LLE++V  G
Sbjct: 262 GCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGG 297



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 129/322 (40%), Gaps = 55/322 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL--GMQTLEEM----- 225
           P+I   N L+D LCK   VD A  + + +        NA TY+ L  G   L  M     
Sbjct: 370 PDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACR 429

Query: 226 -----IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                +  G +PD  TY + I  +CK     E  +L E M +KG     P   T + ++ 
Sbjct: 430 IFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF---PPRVNTLSAVLG 486

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM----------------------- 317
            L + +  E    L   M   GC  D   Y  V+EGM                       
Sbjct: 487 GLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRK 546

Query: 318 ---------------CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
                          C  GK ++A + L +M  +G+   + +YN  L  L   +  DEA 
Sbjct: 547 FNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEAT 606

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +++  M+  G  P + T N++IS      + D A+E    M K GC  D++T   +I G 
Sbjct: 607 QVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGY 666

Query: 423 FDCSKVEEACFLLEEVVNKGLK 444
               + + A  LLEE+   GL+
Sbjct: 667 CKSGRADLARKLLEEMTEAGLE 688



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 1/176 (0%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + +R +E  +L  + +   C+P+  TY  ++ G   AG ++ A + LEEM + G+  +
Sbjct: 32  LCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGN 91

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V +   +K LCD     EAL  + R +   C P V TY  L+    + G+ D A     
Sbjct: 92  AVVHTTLMKGLCDAGRVVEALEHF-RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLR 150

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           EM  +GCA D  T+  +IDGL      E+A  +LE+V+ +G+      F++ + +L
Sbjct: 151 EMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL 206



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 11/250 (4%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           ++GH  + F+ N A+D  C+     EA  LF   R   + I  P   TY I+I       
Sbjct: 17  RVGH--NVFSCNCALDMLCRLNRRQEALALF---RNAMARICMPNKFTYGILIRGFSSAG 71

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            ++    LL  M +SG   +   +  +++G+C AG+V EA +    M  K   PD++TY 
Sbjct: 72  DLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMA-KDCAPDVMTYT 130

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC     DEA  +   M+  GC P   T++ LI    + G  + AF    ++ +R
Sbjct: 131 ALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQR 190

Query: 407 GCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           G       +  +I  L  C+K   VE A  +L  V+ KG       F+  +       DL
Sbjct: 191 GMGNSDAAFETIIQRL--CNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDL 248

Query: 464 GAIHKLSDHM 473
            + +KL + M
Sbjct: 249 DSAYKLLEVM 258



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P +   +  +++ C+     +A  L   M  +G    +    +Y  ++  L +  R +E 
Sbjct: 549 PSSSAVDALVESLCQVGKTDDAKQLLHKMSERGF---AAAVSSYNRLLSGLSRLQRWDEA 605

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +   M+++G  P++ST   V+  +C A KV++AY+ ++ M   G  PDI T N  +  
Sbjct: 606 TQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGG 665

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            C +   D A +L   M E G  P+  T+++L
Sbjct: 666 YCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 178/396 (44%), Gaps = 37/396 (9%)

Query: 73  DSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKA 132
           D  G+ LT + V  +L +F  + K A  FF WA  +D+Y H   A N M+D+L   +   
Sbjct: 74  DCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQID 133

Query: 133 KQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------QPEINA 179
           + + L+  M      + +  V V+ +   +++     + K              +     
Sbjct: 134 QMWELLSDM------HGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTET 187

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           +N+LLD LCK   ++ A  +   +   + P+A T+NI              M T+EEM +
Sbjct: 188 MNVLLDVLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKR 247

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  P   TY T ++ +CK R       ++E + + GS    P   TY +++ +L + +R
Sbjct: 248 RGFPPSVITYTTVLEAYCKQRNFRR---VYEVLDSMGSQGCHPNVITYTMIMTSLAKCER 304

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYN 346
            EE  S+   M +SGC PD   Y  ++  +  +G + EA + F  EM   G   ++ TYN
Sbjct: 305 FEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYN 364

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEPDGAFETWHEM-D 404
             + + C     D+AL +   M    C P +Q+Y  L+ ++    G+ D       E+  
Sbjct: 365 TMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTS 424

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           K     D+DTY ++I GL        A  L +E+V+
Sbjct: 425 KHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 460



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P +    +++ +L KC   + A ++  R+K+   KP+   YN L              Q
Sbjct: 286 HPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQ 345

Query: 221 TLEEMIQMGHAPDNF-TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
                + M     N  TYNT I  FC      +A ++ + M  +      P  ++Y  ++
Sbjct: 346 VFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSC---KPDIQSYRPLL 402

Query: 280 VALV----QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
              +    Q D +    S L    N G   D+ TY  ++ G+C  G    AY+  +EM +
Sbjct: 403 RLFLSRRGQADTVRHLLSELTSKHNLGL--DLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 460

Query: 336 KGYPP 340
               P
Sbjct: 461 SEIAP 465


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 178/396 (44%), Gaps = 37/396 (9%)

Query: 73  DSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKA 132
           D  G+ LT + V  +L +F  + K A  FF WA  +D+Y H   A N M+D+L   +   
Sbjct: 28  DCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQID 87

Query: 133 KQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------QPEINA 179
           + + L+  M      + +  V V+ +   +++     + K              +     
Sbjct: 88  QMWELLSDM------HGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTET 141

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           +N+LLD LCK   ++ A  +   +   + P+A T+NI              M T+EEM +
Sbjct: 142 MNVLLDVLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKR 201

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  P   TY T ++ +CK R       ++E + + GS    P   TY +++ +L + +R
Sbjct: 202 RGFPPSVITYTTVLEAYCKQRNFRR---VYEVLDSMGSQGCHPNVITYTMIMTSLAKCER 258

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYN 346
            EE  S+   M +SGC PD   Y  ++  +  +G + EA + F  EM   G   ++ TYN
Sbjct: 259 FEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYN 318

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEPDGAFETWHEM-D 404
             + + C     D+AL +   M    C P +Q+Y  L+ ++    G+ D       E+  
Sbjct: 319 TMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTS 378

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           K     D+DTY ++I GL        A  L +E+V+
Sbjct: 379 KHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 414



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P +    +++ +L KC   + A ++  R+K+   KP+   YN L              Q
Sbjct: 240 HPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQ 299

Query: 221 TLEEMIQMGHAPDNF-TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
                + M     N  TYNT I  FC      +A ++ + M  +      P  ++Y  ++
Sbjct: 300 VFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSC---KPDIQSYRPLL 356

Query: 280 VALV----QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
              +    Q D +    S L    N G   D+ TY  ++ G+C  G    AY+  +EM +
Sbjct: 357 RLFLSRRGQADTVRHLLSELTSKHNLGL--DLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 414

Query: 336 KGYPP 340
               P
Sbjct: 415 SEIAP 419


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           +    +P+A T+ IL              Q L  M +MG  PD+  YN  I  + KA+  
Sbjct: 2   IDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDF 61

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A   F+F+         PT  TY  ++  L +  R ++   LL  M + GC P++ TY
Sbjct: 62  GQA---FKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTY 118

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++EG+C   K++EA K LEEM  +GY PD+VTYN F+K LC     DEA +   RM  
Sbjct: 119 NVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM-- 176

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
               P V +Y  +I+   + G+ D A     +M  RGC  DV TY  +IDG     +VE 
Sbjct: 177 -PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVER 235

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
           A  LL+ ++  G +     ++S L  L  +G +G    +   M R+ + P
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTP 285



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 54/333 (16%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
            K   E +K    P +     ++D LCK G    A  +   +++K   PN  TYN++   
Sbjct: 65  FKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEG 124

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + LEEM   G+ PD  TYN+ I   CK   V EA      M        
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV------ 178

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   +Y  +I  L ++  ++    +L  M N GC PDV TY  +++G C  G+VE A  
Sbjct: 179 TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMG 238

Query: 329 FLE-----------------------------------EMGNKGYPPDIVTYNCFLKVLC 353
            L+                                   EM  +G+ PD+V+YN  +  LC
Sbjct: 239 LLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLC 298

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +   +A  ++ RM+E GC P+  +Y+ML+    +  E D A     +  ++    D+ 
Sbjct: 299 KAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDIL 358

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            Y V++DGL    + +EAC L  +V+++ +  P
Sbjct: 359 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEP 391



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 142/288 (49%), Gaps = 18/288 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           ++   P++ +   +++ LCK G +D A  +  ++ N+   P+  TY+ L           
Sbjct: 175 RMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVE 234

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             M  L+ M+++G  P+   YN+ +    +   + +A D+   M  +G T   P   +Y 
Sbjct: 235 RAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFT---PDVVSYN 291

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
             I  L + +R+++  ++   M+  GC P+ S+Y  ++E +C   ++++A   +E+   K
Sbjct: 292 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREK 351

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDG 395
               DI+ Y   L  LC     DEA  L+ +++ E  C P V  YN+++  + +  + D 
Sbjct: 352 YQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDK 411

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A +   +M +R C  +V T+ +++ GL    ++ +A  +L  +V++G 
Sbjct: 412 ALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGF 458



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 129/309 (41%), Gaps = 63/309 (20%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           +D  + +++Q  EK ++    +I    +LLD LCK G  D A  +  +V           
Sbjct: 338 LDDAITLVEQAREKYQI---VDILLYTVLLDGLCKGGRFDEACALFSKV----------- 383

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  L+E I     PD F YN  +D+ CK R + +A  + + M  +          T
Sbjct: 384 -------LDEKI---CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC----NVVT 429

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           + I++  L  +DR+ +  ++L  M++ G +PD  TY  +++ MC  GK   A +  EE  
Sbjct: 430 WNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAV 489

Query: 335 NKGYPPDIVTYNCFLKVL----------------------------CDNKNGDEALRLYG 366
             G  PD+VTY+  +  L                             +N +GD  L+L+ 
Sbjct: 490 KGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFV 549

Query: 367 RMIEVGCWPSVQTYNMLISMYF----ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +IE    P+ +T+   IS        LG+  G F+      K G   D+     +ID  
Sbjct: 550 ELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAV---KGGFFPDLFVANTLIDVF 606

Query: 423 FDCSKVEEA 431
             C  +EEA
Sbjct: 607 AKCGDLEEA 615



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           MI+  C PD  T+  +L G+C + ++E+A + L  M   G  PD   YN  +      K+
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             +A +    M++  C P+V TY  ++    + G    A +   EM  +GC+ ++ TY V
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +++GL +  K++EA  +LEE+  +G       ++S++  L
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 160



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 44/236 (18%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           +P++   N++LD+ CK   +D A  I K++  +   N  T+NIL                
Sbjct: 390 EPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETM 449

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M+  G  PD  TY T +D  CK      A +LFE    KG  +  P   TY+ +I  
Sbjct: 450 LLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFE-EAVKGGCV--PDVVTYSALITG 506

Query: 282 LVQNDRMEECFSL-------------LGH---------------MINSGCLPDVSTY-KE 312
           LV  +  EE + L             LG+               +I S   P+  T+ KE
Sbjct: 507 LVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKE 566

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           +   +  A  + +A    +     G+ PD+   N  + V     + +EA R++  M
Sbjct: 567 ISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 149/326 (45%), Gaps = 52/326 (15%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
             ++     P++ A N ++   C  G VD A   C   +  V+ +A T + L        
Sbjct: 117 ARRVLAACGPDVMAYNAMMAGYCGAGQVDAARRWC--AERAVERDAYTCDTLIRGLCGRG 174

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                +  L+EM++    PD  TY   ++  CK     +A  L + MR KG T   P   
Sbjct: 175 RTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCT---PDIV 231

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY +++  + Q  R+++    L ++ + GC P+  +Y  VL+G+C A + E+A + + EM
Sbjct: 232 TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM 291

Query: 334 GNKGYPPDIVT-----------------------------------YNCFLKVLCDNKNG 358
           G KG PP++VT                                   YN  L   C  K  
Sbjct: 292 GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKM 351

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           D+A+     M+  GC+P + +YN L++     GE D A E  H++  +GCA  + +Y  +
Sbjct: 352 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 411

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLK 444
           IDGL    K +EA  LL E+V+KGL+
Sbjct: 412 IDGLTKAGKTKEALELLNEMVSKGLQ 437



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 145/282 (51%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P   + N++L  LC     + AE +   +  K   PN  T+N+L             ++
Sbjct: 262 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 321

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE++ + G +P++ +YN  +  FCK + + +A    + M ++G     P   +Y  ++ 
Sbjct: 322 VLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY---PDIVSYNTLLT 378

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++  ++    LL  + + GC P + +Y  V++G+  AGK +EA + L EM +KG  P
Sbjct: 379 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 438

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+     LC     ++A+R +G++ ++G  P+   YN +I    +  E   A + +
Sbjct: 439 DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLF 498

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             M   GC  +  TY ++I+GL     ++EA  LL+E+ ++G
Sbjct: 499 AYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 16/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E ++ +  P++    +LL+A CK      A  +   +++K   P+  TYN++        
Sbjct: 185 EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 244

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L+ +   G  P+  +YN  +   C A    +A +L   M  KG     P   
Sbjct: 245 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGC---PPNVV 301

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ ++I  L +   +E    +L  +   GC P+  +Y  +L   C   K+++A  FL+ M
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G  PDIV+YN  L  LC +   D A+ L  ++ + GC P + +YN +I    + G+ 
Sbjct: 362 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 421

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A E  +EM  +G   D+ TY  +  GL    ++E+A     +V + G++
Sbjct: 422 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIR 472



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 38/229 (16%)

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           + R +    +L E +R  GS    P A T A +I  L  + R  E   +L     + C P
Sbjct: 73  RLRSLVRRGELDEALRLVGSA-RRPDAGTCAALIKKLSASGRTAEARRVL-----AACGP 126

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKF--------------------------------LEEM 333
           DV  Y  ++ G C AG+V+ A ++                                L+EM
Sbjct: 127 DVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEM 186

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +   PD+VTY   L+  C      +A++L   M + GC P + TYN++++   + G  
Sbjct: 187 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 246

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           D A E    +   GC  +  +Y +++ GL    + E+A  L+ E+  KG
Sbjct: 247 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG 295


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 190/427 (44%), Gaps = 33/427 (7%)

Query: 76  GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQF 135
           G+  T++ V G+L +F  + K A   F WA    NY H   A + MID+L   +   + +
Sbjct: 78  GIQPTSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQMW 137

Query: 136 RLVCSM-----------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLL 184
            L+  M              ++R        D +L+  K     ++  T+     +N+LL
Sbjct: 138 DLLSDMHCRGLVTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTE----TMNVLL 193

Query: 185 DALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP 232
           DALCK   V+ A  +   +   ++P+A T+NI              M T+EEM   G  P
Sbjct: 194 DALCKEKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGFPP 253

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
              TY T ++ +CK        ++ + M ++G     P   TY +++ +L +    EE  
Sbjct: 254 SVITYTTVLEAYCKQHNFRMVYEILDSMSSEGC---HPNVITYTMIMTSLAKCHMFEEAL 310

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKV 351
           S+   M +SGC PD   Y  ++  +  AG + EA + F  EM   G P  + TYN  + V
Sbjct: 311 SVSHRMKSSGCKPDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISV 370

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEPDGAFETWHE-MDKRGCA 409
            C     ++AL +   M    C P +QTY  L+ ++    G+ D      +E M+K    
Sbjct: 371 FCYKDLDEDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLG 430

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            D+DTY ++I GL    + + A  L +E+V   +   YR  +  L +         + ++
Sbjct: 431 LDLDTYTLLIHGLCRVGETDWAYRLFDEMVGSEIVPRYRTCELLLSEAQRKKMEEWVERI 490

Query: 470 SDHMRKF 476
            ++M +F
Sbjct: 491 QNYMTRF 497


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 150/298 (50%), Gaps = 16/298 (5%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEM 225
            +N+L+   CK G ++   +    + N+  +P+  T+N L             ++ L+ M
Sbjct: 283 TVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +Q G  PD FTYN+ I   CK   V EA ++   M  +     SP   TY  +I  L + 
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDF---SPNTVTYNTLISTLCKE 399

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +++EE   L   + + G LPDV T+  +++G+CL      A +  EEM  KG  PD  TY
Sbjct: 400 NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTY 459

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC     +EAL L   M   GC  +V TYN LI  + +    + A E + EM+ 
Sbjct: 460 NMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMEL 519

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +G +++V TY  +IDGL    +VEEA  L+++++ +GLK     ++S L      GD+
Sbjct: 520 QGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDI 577



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 173/350 (49%), Gaps = 26/350 (7%)

Query: 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALN 181
           ID +S+  ++  +F    S+++ + R   V   +++L ++L++  +       P+I   N
Sbjct: 304 IDEMSNEGFRPDRFTF-NSLVNGLCRIGHVKHALEILDVMLQEGFD-------PDIFTYN 355

Query: 182 LLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL------EEMIQM------ 228
            L+  LCK G V+ A E + + +     PN  TYN L + TL      EE  ++      
Sbjct: 356 SLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTL-ISTLCKENQVEEATELARVLTS 414

Query: 229 -GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  T+N+ I   C       A +LFE M+TKG     P   TY ++I +L    R
Sbjct: 415 KGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGC---HPDEFTYNMLIDSLCSRGR 471

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE  SLL  M +SGC  +V TY  +++G C   ++EEA +  +EM  +G   ++VTYN 
Sbjct: 472 LEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNT 531

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC N+  +EA +L  +M+  G  P   TYN L++ +   G+   A +    M   G
Sbjct: 532 LIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG 591

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           C  D  TY  +I GL    +VE A  LL  V  KG+ L  + ++  +  L
Sbjct: 592 CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKAL 641



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 24/296 (8%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           MIL+ ++        P     N L+  LCK   V+ A  + + + +K + P+  T+N L 
Sbjct: 377 MILRDFS--------PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 428

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       M+  EEM   G  PD FTYN  ID+ C    + EA  L + M + G  
Sbjct: 429 QGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGC- 487

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             S    TY  +I    +N R+EE   +   M   G   +V TY  +++G+C   +VEEA
Sbjct: 488 --SRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEA 545

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            + +++M  +G  PD  TYN  L   C   +  +A  +   M   GC P   TY  LI  
Sbjct: 546 AQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILG 605

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             + G  + A      +  +G      TY  +I  LF   +  EA  L  E++ KG
Sbjct: 606 LSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKG 661



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 145/314 (46%), Gaps = 28/314 (8%)

Query: 162 LKQYTEKIKVKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           +++ TE  +V T     P++   N L+  LC       A  + + +K K   P+  TYN+
Sbjct: 402 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNM 461

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             +  L+EM   G + +  TYNT ID FCK + + EA ++F+ M  +G
Sbjct: 462 LIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQG 521

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               S    TY  +I  L +N R+EE   L+  M+  G  PD  TY  +L   C AG ++
Sbjct: 522 I---SRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIK 578

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +A   ++ M + G  PD VTY   +  L      + A RL   +   G   + QTYN +I
Sbjct: 579 KAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVI 638

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNK 441
              F       A   + EM ++G   D  TY V+  GL  CS    + EA   L E+ +K
Sbjct: 639 KALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGL--CSGGGPIGEAVDFLVEMTDK 696

Query: 442 GLKLPYRKFDSYLM 455
           G  LP   F S+LM
Sbjct: 697 GF-LP--DFSSFLM 707



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL--------GMQTLE----EMIQ 227
           +L+++  K  L D A  +   ++ +  +K +A TYN L         ++ +E     M+ 
Sbjct: 145 ILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVS 204

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  T+N  I   C+A  +  A  + E M   GS   SP  KT+  ++   ++   
Sbjct: 205 RGIKPDVTTFNILIKALCRAHQIRPAILMMEEM---GSYGLSPDEKTFTTLMQGFIEEGN 261

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           M     +   M+ +GC     T   ++ G C  G++EE   F++EM N+G+ PD  T+N 
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNS 321

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC   +   AL +   M++ G  P + TYN LI    +LGE + A E  ++M  R 
Sbjct: 322 LVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRD 381

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
            + +  TY  +I  L   ++VEEA  L   + +KG+      F+S +  L +  +     
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 468 KLSDHMR 474
           +L + M+
Sbjct: 442 ELFEEMK 448



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 46/236 (19%)

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D  CK   ++ AE I   ++   +  N  TYN L              Q +++M+ 
Sbjct: 495 NTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLM 554

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT---------------- 271
            G  PD FTYN+ +  FC+A  + +AAD+ + M + G    S T                
Sbjct: 555 EGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVEL 614

Query: 272 ----------------AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
                            +TY  +I AL +  R  E   L   M+  G  PD  TYK V  
Sbjct: 615 ASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFR 674

Query: 316 GMCLAG-KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
           G+C  G  + EA  FL EM +KG+ PD  ++    + LC     D  ++L  R+++
Sbjct: 675 GLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMK 730


>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
 gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 190/424 (44%), Gaps = 33/424 (7%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
           + ++ D V  +L RF+ + K A   F WAG +  Y H P AY++M+DIL     K KQ  
Sbjct: 36  IEVSNDLVDKLLLRFKDDWKSALGVFRWAGLRPGYKHRPEAYDMMVDILG----KMKQMD 91

Query: 137 LVCSMLDYMKRNNKV-----------FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLD 185
            +  +L+ M RN+ V           F         ++ + E      +    ++NLLLD
Sbjct: 92  QMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWEDAVRMFDELGTFGLEKNAESMNLLLD 151

Query: 186 ALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD 233
            LCK G V+ A  I   +K+ + PNA+T+NI                TL+EM      P 
Sbjct: 152 TLCKEGKVEQARAIFLELKSHILPNAHTFNIFIHGWCKANLVDEAHWTLQEMKGHAFRPC 211

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             +Y+T I  +C+    ++  +L + M  +G     P   TY  +IV L ++   EE   
Sbjct: 212 VISYSTIILFYCRQHNFSKVYELLDEMEAQG---CPPNVVTYTTIIVFLAKSQNTEEALQ 268

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE-EMGNKGYPPDIVTYNCFLKVL 352
           L   M ++GC PD   +  ++  +  AG+ +EA    E EM N G   D  TYN  + +L
Sbjct: 269 LTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIAML 328

Query: 353 CDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEM-DKRGCAQ 410
           C + +  +AL L   M     +    QT+  L+      G+ +   +   +M  K   + 
Sbjct: 329 CHHGHVSKALSLLREMETSAPFKLDGQTFYPLLKSCLRTGDMNLLSQLLDDMVKKHQLSL 388

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           D   Y ++I GL   +K + A  L EE+++K +   Y+     L ++ +        K+ 
Sbjct: 389 DRSAYALLIHGLCRANKCQWAYHLFEEMISKDIVPKYQTCHMLLEEVKLKSMYDTAEKIE 448

Query: 471 DHMR 474
           D M+
Sbjct: 449 DFMK 452


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 23/339 (6%)

Query: 163 KQYTEKIKVKT-QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
           ++  EK+K     P+  A N LL+ LCK   L + ++ + + V+   +P+  +YN +   
Sbjct: 182 RKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC 241

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + LE+MI+    PD  TYN+ +D FCK   + EA  L E M  +     
Sbjct: 242 LCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRC--- 298

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +PT  TY  +I    + DR+ + + ++  M  +G  PD+ TY  +L+G+C AGK+EEA++
Sbjct: 299 APTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHE 358

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            LE M  K   PD+VTY+  +  LC     D+A  L   M+E GC P++ T+N +I  + 
Sbjct: 359 LLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFC 418

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G+ D   +    M +  C  DV TY  +IDG    +++++A  +L      G+     
Sbjct: 419 KAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKA 472

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487
            + S L  L   G +    ++ D M K   P  +   AL
Sbjct: 473 SYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYAL 511



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 151/339 (44%), Gaps = 57/339 (16%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPN 210
           F   D L    +   +  K    P++   N LLD LCK G ++ A  + +  V+    P+
Sbjct: 312 FSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD 371

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             TY+IL                LE M++ G  P+  T+NT ID FCKA  V E   + E
Sbjct: 372 VVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLE 431

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M+    T   P   TY+ +I    + +RM++ F++LG        PD ++Y  +LEG+C
Sbjct: 432 LMKEVSCT---PDVVTYSTLIDGYCKANRMQDAFAILGIS------PDKASYSSMLEGLC 482

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY------------- 365
             GKVEEA + ++ M  +G PP    Y   +  LCD + GDEAL++              
Sbjct: 483 STGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLY 542

Query: 366 ----------------------GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
                                   M+E GC P V TY  LI  + ++ + D A++ +  M
Sbjct: 543 TYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              GC  D   Y ++I G      VE+A  +++ ++ KG
Sbjct: 603 RDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKG 641



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 150/326 (46%), Gaps = 16/326 (4%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           M+L+   E +  +  P++   N +L A C+ G +D A +   R K    P A TY IL  
Sbjct: 42  MVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH-FRGKMWCSPTAFTYCILIH 100

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       Q L+EMIQ    PD   YN  I   CK   +  A ++ + M  +    
Sbjct: 101 GLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCV- 159

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  +IV   Q + ++E   L+  M  SG  PD   Y  +L G+C   ++EE  
Sbjct: 160 --PDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVS 217

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           K LEEM   G  PD  +YN  +  LC++   +EA ++  +MIE  C P V TYN L+  +
Sbjct: 218 KLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGF 277

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            ++ + D A     +M  R CA  V TY  +I G     ++ +A  ++E++   G+    
Sbjct: 278 CKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDL 337

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHM 473
             ++  L  L   G L   H+L + M
Sbjct: 338 VTYNCLLDGLCKAGKLEEAHELLEVM 363



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 193/448 (43%), Gaps = 64/448 (14%)

Query: 81  TDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCS 140
           T  +VG  Q    +E    R  M    +     + +AYN +++ L     K  Q   V  
Sbjct: 166 TSLIVGCCQTNALDEA---RKLMEKMKESGLTPDTVAYNALLNGLC----KQNQLEEVSK 218

Query: 141 MLDYM---KRNNKVFVPVDVLLMILK--QYTEKIKV-------KTQPEINALNLLLDALC 188
           +L+ M    R    F    V+  + +  +Y E  K+       K  P++   N L+D  C
Sbjct: 219 LLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFC 278

Query: 189 KCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNF 235
           K   +D AE + +  V  +  P   TY  L              + +E+M + G +PD  
Sbjct: 279 KVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLV 338

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TYN  +D  CKA  + EA +L E M  K     +P   TY+I++  L +  ++++   LL
Sbjct: 339 TYNCLLDGLCKAGKLEEAHELLEVMVEKDC---APDVVTYSILVNGLCKLGKVDDARLLL 395

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF------- 348
             M+  GC P++ T+  +++G C AGKV+E +K LE M      PD+VTY+         
Sbjct: 396 EMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKA 455

Query: 349 ----------------------LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
                                 L+ LC     +EA  +   M + GC P+   Y ++I  
Sbjct: 456 NRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGG 515

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             ++   D A +    M +RGC  ++ TY ++I+GL    +VE+A  +L+ ++ KG    
Sbjct: 516 LCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPD 575

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
              + S +     I  + A ++    MR
Sbjct: 576 VATYTSLIDGFCKINKMDAAYQCFKTMR 603



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 10/249 (4%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------GMQTLEEMI 226
           QP +   N ++D  CK G VD    + + +K     P+  TY+ L        +  +   
Sbjct: 404 QPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFA 463

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
            +G +PD  +Y++ ++  C    V EA ++ + M  +G     PT+  YA++I  L   +
Sbjct: 464 ILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC---PPTSSHYALIIGGLCDVE 520

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R +E   +L  M   GC P++ TY  ++ G+C   +VE+A   L+ M  KG  PD+ TY 
Sbjct: 521 RGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYT 580

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C     D A + +  M + GC P    YN+LIS + + G  + A E    M ++
Sbjct: 581 SLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEK 640

Query: 407 GCAQDVDTY 415
           GC  D  TY
Sbjct: 641 GCNPDAATY 649



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 10/234 (4%)

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           + F R + S  S P+  TY  +I    +    +    +   M+     PDV T+  +L+ 
Sbjct: 9   YSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKA 68

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C  G ++ A       G     P   TY   +  LC  +  DEA +L   MI+  C P 
Sbjct: 69  YCQIGDLDRALSHFR--GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPD 126

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
              YN LI+   ++G+ D A      M +R C  DV TY  +I G    + ++EA  L+E
Sbjct: 127 AAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLME 186

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF--------YNPVIA 482
           ++   GL      +++ L  L     L  + KL + M +         YN V+A
Sbjct: 187 KMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVA 240


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 150/301 (49%), Gaps = 20/301 (6%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-- 217
           ILK+  E    K  P     N+L+D  CK   +  A  + + ++++ +KP   TYN L  
Sbjct: 290 ILKEMVEN---KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                         L+EM+     P+  TYN  I+ +CK +++ EA +LF+ +  +G T 
Sbjct: 347 GLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT- 405

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  ++    +  +MEE F L   M+  G LP+ STY  ++ G C  GK+EE  
Sbjct: 406 --PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVK 463

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             L EM  +G   D VTYN  +   C+ K   +A RL   M++ G  PS  TYN+L++ Y
Sbjct: 464 NLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGY 523

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
              G    A     +M+K G   +V TY V+I G     K+E+A  LL E++ KGL +P 
Sbjct: 524 CMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGL-IPN 582

Query: 448 R 448
           R
Sbjct: 583 R 583



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 158/327 (48%), Gaps = 19/327 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E I+ K  P +   N +++ LCK G ++ A  +   +K     PN  TYN L      
Sbjct: 218 YKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCK 277

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L+EM++   +P++ T+N  ID FCK   ++ A  +FE M+++G    
Sbjct: 278 MGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGL--- 334

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            PT  TY  ++  L    ++ E   LL  M++S   P+V TY  ++ G C    +EEA +
Sbjct: 335 KPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARE 394

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             + +G +G  P+++T+N  L   C     +EA  L   M+E G  P+  TYN LI  + 
Sbjct: 395 LFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFC 454

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G+ +      +EM  RG   D  TY ++I    +  + ++A  L++E+++KGLK  + 
Sbjct: 455 REGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHL 514

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            ++  L    + G+L A   L   M K
Sbjct: 515 TYNILLNGYCMEGNLRAALNLRKQMEK 541



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 3/170 (1%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ ALV+ +       +   MI     P++ T+  V+ G+C  GK+ +A   +++M   G
Sbjct: 201 LLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWG 260

Query: 338 YPPDIVTYNCFLKVLCD-NKNGD--EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           + P++VTYN  +   C   + G   +A  +   M+E    P+  T+N+LI  + +     
Sbjct: 261 FWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLS 320

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            A + + EM  +G    V TY  +++GL +  K+ EA  LL+E+++  LK
Sbjct: 321 AALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLK 370


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 144/317 (45%), Gaps = 52/317 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N+L+   CK G +  A  +  R+   V P+  TYN +             M+ L
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRMS--VSPDVVTYNTILRTLCDSGKLKEAMEVL 235

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +  +Q    PD  TY   I+  CK   V +A  L + MR KG     P   TY ++I  +
Sbjct: 236 DRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGC---KPDVVTYNVLINGI 292

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R++E    L HM + GC P+V T+  +L  MC  G+  +A KFL EM  KG  P +
Sbjct: 293 CKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSV 352

Query: 343 VT-----------------------------------YNCFLKVLCDNKNGDEALRLYGR 367
           VT                                   YN  L  LC +K  + A+     
Sbjct: 353 VTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDI 412

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+  GC+P + TYN L++   + G+ D A E  +++  +GC+  + TY  +IDGL    K
Sbjct: 413 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGK 472

Query: 428 VEEACFLLEEVVNKGLK 444
            ++A  LL+E+  KGLK
Sbjct: 473 TDDAIKLLDEMKGKGLK 489



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P++   N+L++ +CK G +D A      + +   +PN  T+NI+              +
Sbjct: 279 KPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 338

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EMI+ G +P   T+N  I+  C+  ++  A D+ E M   G T   P + +Y  ++ 
Sbjct: 339 FLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCT---PNSLSYNPLLH 395

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ +ME     L  M++ GC PD+ TY  +L  +C  GKV+ A + L ++G+KG  P
Sbjct: 396 ALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSP 455

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            ++TYN  +  L      D+A++L   M   G  P + TY+ L+      G+ D A   +
Sbjct: 456 VLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFF 515

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           H++++ G   +  TY  ++ GL    +   A   L  +V +G K
Sbjct: 516 HDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCK 559



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 27/316 (8%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   N++L ++C  G  +D  + + + ++    P+  T+NIL             + 
Sbjct: 314 QPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAID 373

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M Q G  P++ +YN  +   CK + +  A +  + M ++G     P   TY  ++ 
Sbjct: 374 VLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCY---PDIVTYNTLLT 430

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ +++    +L  + + GC P + TY  V++G+   GK ++A K L+EM  KG  P
Sbjct: 431 ALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKP 490

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  +  L      DEA+  +  + E+G  P+  TYN ++    +  +   A +  
Sbjct: 491 DIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFL 550

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-----------LKLPYRK 449
             M  RGC     +Y ++I+GL      +EA  LL E+ ++G           +K+P+  
Sbjct: 551 AYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVVKIPFNV 610

Query: 450 FDSYLMQLSVIGDLGA 465
           F  Y +   +   LG+
Sbjct: 611 FYFYFLLHLLFNGLGS 626



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 165/364 (45%), Gaps = 29/364 (7%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-----LKQYTEKIK 170
           + YN++I    S   K  +      +LD M  +  V     +L  +     LK+  E + 
Sbjct: 181 ITYNVLI----SGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 171 VKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
            + Q    P++    +L++A CK   V  A  +   +++K  KP+  TYN+L        
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEG 296

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L  M   G  P+  T+N  + + C      +A      M  KG    SP+  
Sbjct: 297 RLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGC---SPSVV 353

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I+I  L +   +     +L  M   GC P+  +Y  +L  +C   K+E A ++L+ M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G  PDIVTYN  L  LC +   D A+ +  ++   GC P + TYN +I    ++G+ 
Sbjct: 414 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKT 473

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A +   EM  +G   D+ TY  ++ GL    KV+EA     ++   G+K     ++S 
Sbjct: 474 DDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSI 533

Query: 454 LMQL 457
           ++ L
Sbjct: 534 MLGL 537



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 28/268 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+I A   L+  LCK G    A  +                   M+ LE+    G  PD 
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRV-------------------MEILEDS---GAVPDV 180

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN  I  +CK   +  A  L + M        SP   TY  ++  L  + +++E   +
Sbjct: 181 ITYNVLISGYCKTGEIGSALQLLDRMSV------SPDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L   +   C PDV TY  ++E  C    V +A K L+EM +KG  PD+VTYN  +  +C 
Sbjct: 235 LDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICK 294

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               DEA+R    M   GC P+V T+N+++      G    A +   EM ++GC+  V T
Sbjct: 295 EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVT 354

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + ++I+ L     +  A  +LE++   G
Sbjct: 355 FNILINFLCRKGLIGRAIDVLEKMPQHG 382



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 120/258 (46%), Gaps = 16/258 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---- 217
           K   E I+    P +   N+L++ LC+ GL+  A  + +++ ++   PN+ +YN L    
Sbjct: 338 KFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHAL 397

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++ L+ M+  G  PD  TYNT +   CK   V  A ++   + +KG    S
Sbjct: 398 CKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC---S 454

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  +I  L +  + ++   LL  M   G  PD+ TY  ++ G+   GKV+EA  F
Sbjct: 455 PVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAF 514

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             ++   G  P+ +TYN  +  LC  +    A+     M+  GC P+  +Y +LI     
Sbjct: 515 FHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAY 574

Query: 390 LGEPDGAFETWHEMDKRG 407
            G    A E  +E+  RG
Sbjct: 575 EGLAKEALELLNELCSRG 592



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 3/195 (1%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+N  +EE F  L  M+  G +PD+     ++ G+C  GK  +A + +E + + G  PD
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +   C       AL+L  RM      P V TYN ++    + G+   A E   
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              +R C  DV TY ++I+     S V +A  LL+E+ +KG K     ++  +  +   G
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEG 296

Query: 462 DLGAIHKLSDHMRKF 476
            L    +  +HM  +
Sbjct: 297 RLDEAIRFLNHMPSY 311



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 138/336 (41%), Gaps = 47/336 (13%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEP--LAYNLMIDILSST-------KYKAKQFR 136
           G+ +  + +E I F       H  +Y  +P  + +N+++  + ST       K+ A+  R
Sbjct: 291 GICKEGRLDEAIRF-----LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIR 345

Query: 137 LVCS--------MLDYMKRNNKVFVPVDVLLMILKQYTEKI-KVKTQPEINALNLLLDAL 187
             CS        +++++ R   +   +DVL        EK+ +    P   + N LL AL
Sbjct: 346 KGCSPSVVTFNILINFLCRKGLIGRAIDVL--------EKMPQHGCTPNSLSYNPLLHAL 397

Query: 188 CKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDN 234
           CK   ++ A E +   V     P+  TYN L             ++ L ++   G +P  
Sbjct: 398 CKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVL 457

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYNT ID   K     +A  L + M+ KG     P   TY+ ++  L +  +++E  + 
Sbjct: 458 ITYNTVIDGLSKVGKTDDAIKLLDEMKGKGL---KPDIITYSTLVGGLSREGKVDEAIAF 514

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              +   G  P+  TY  ++ G+C A +   A  FL  M  +G  P   +Y   ++ L  
Sbjct: 515 FHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAY 574

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
                EAL L   +   G         +++ + F +
Sbjct: 575 EGLAKEALELLNELCSRGVVKKSSAEQVVVKIPFNV 610


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 134/277 (48%), Gaps = 16/277 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P +   + L+D LCK G V  A+ + KR +   ++PN  TYN L             +  
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 309

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EEM   G  PD  TYNT ID  CK     EA  LF  M+ K     +P   TY+ +I  
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAK---FCNPDVITYSCLIGG 366

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + +R++   +L   M+    LPDV T+  ++EG C AG V++A + LEEM      PD
Sbjct: 367 FCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 426

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TY   +   C      EA R+  RM + GC P+V TY  LI  +   G+P  A++   
Sbjct: 427 VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLE 486

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           EM   G   +V TY  +I G      +EEA  +LE +
Sbjct: 487 EMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERL 523



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 132/276 (47%), Gaps = 16/276 (5%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQM 228
           +++D LCK   +  A T   ++K K   PN  TYN+L                L+EM + 
Sbjct: 12  IMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES 71

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G AP+  TY+T I  FC+   V  A  LF  M   G     P   TY  ++  L +N  M
Sbjct: 72  GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM---PNLVTYNTLLSGLCRNGLM 128

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E + LL  M   G  PD  +Y  ++ G+C  GK++ A K  E+  N   PPD+V Y+  
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC     DEA +L+ +M E  C P V T+  L+    +      A +    M+ R C
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +V TY  +IDGL    +V +A  + + ++ +G++
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 284



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 150/327 (45%), Gaps = 16/327 (4%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL- 217
           M LK + +       P++ A + L+  LCK G +D A  + ++++ N  +P+  T+  L 
Sbjct: 165 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALM 224

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                        Q LE M      P+  TY++ ID  CK   V +A ++F+ M  +G  
Sbjct: 225 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI- 283

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY  +I      + ++    L+  M  +GCLPD+ TY  +++G+C  G+  EA
Sbjct: 284 --EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 341

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   +M  K   PD++TY+C +   C  +  D A  L+  M++    P V T++ L+  
Sbjct: 342 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 401

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           Y   G  D A     EM    C+ DV TY  ++DG     ++ EA  +L+ +  +G +  
Sbjct: 402 YCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 461

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              + + +      G     +KL + M
Sbjct: 462 VVTYTALIDAFCRAGKPTVAYKLLEEM 488



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 17/297 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           K + + ++    P +   N LL  LC+ GL+D A  +   ++ + ++P+  +Y+ L    
Sbjct: 98  KLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 157

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++  E+       PD   Y+T I   CK   + EA  LFE MR        
Sbjct: 158 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSC---E 214

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T+  ++  L + DR++E   +L  M +  C P+V TY  +++G+C  G+V +A + 
Sbjct: 215 PDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEV 274

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            + M  +G  P++VTYN  +   C     D AL L   M   GC P + TYN LI    +
Sbjct: 275 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCK 334

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            G    A   + +M  + C  DV TY  +I G     +++ A  L ++++ + + LP
Sbjct: 335 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAV-LP 390



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 16/270 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P +   + ++   C+   VD A  + ++ V+N   PN  TYN L              + 
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 134

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM + G  PD F+Y+T +   CK   +  A  +FE      +    P    Y+ +I  
Sbjct: 135 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE---DNSNGDCPPDVVAYSTLIAG 191

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R++E   L   M  + C PDV T+  +++G+C   +++EA + LE M ++   P+
Sbjct: 192 LCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 251

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TY+  +  LC      +A  ++ RMI  G  P+V TYN LI  +      D A     
Sbjct: 252 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 311

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           EM   GC  D+ TY  +IDGL    +  EA
Sbjct: 312 EMTATGCLPDIITYNTLIDGLCKTGRAPEA 341



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T+   ID  CKA  + EA   F  M+ KG+    P   TY ++I    +  ++   + L
Sbjct: 8   ITWTIMIDGLCKANRLPEATTYFAKMKKKGTV---PNEWTYNVLINGFCKVHKVHRAYLL 64

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M  SG  P+V TY  V+ G C   KV+ AYK   +M   G  P++VTYN  L  LC 
Sbjct: 65  LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 124

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           N   DEA  L   M E G  P   +Y+ L++   + G+ D A + + +     C  DV  
Sbjct: 125 NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA 184

Query: 415 YCVMIDGLFDCSKVEEACFLLEEV 438
           Y  +I GL    +++EAC L E++
Sbjct: 185 YSTLIAGLCKTGRLDEACKLFEKM 208



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 21/334 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           VD  L+++++ T        P+I   N L+D LCK G    A  +   +K K   P+  T
Sbjct: 303 VDSALLLMEEMT---ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 359

Query: 214 YNIL--GMQTLE----------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L  G   LE          +M++    PD  T++T ++ +C A +V +A  L E M 
Sbjct: 360 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 419

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
              ++  SP   TY  ++    +  RM E   +L  M   GC P+V TY  +++  C AG
Sbjct: 420 ---ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG 476

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTY 380
           K   AYK LEEM   G  P+++TY   +   C   + +EA ++  R+  +  C   +  Y
Sbjct: 477 KPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAY 536

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-V 439
            +++      G    A E    + + G     D Y  +I GL    ++ +A  +LEE+ +
Sbjct: 537 RVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTL 596

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           ++  +     +++ + +L+  G     + L+D +
Sbjct: 597 SRKSRPNAEAYEAVIQELAREGRHEEANALADEL 630



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 98/202 (48%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ IMI  L + +R+ E  +    M   G +P+  TY  ++ G C   KV  AY  L+EM
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P++VTY+  +   C     D A +L+ +M+E GC P++ TYN L+S     G  
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A+E   EM +RG   D  +Y  ++ GL    K++ A  + E+  N         + + 
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 454 LMQLSVIGDLGAIHKLSDHMRK 475
           +  L   G L    KL + MR+
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRE 210



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 120/292 (41%), Gaps = 26/292 (8%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTE 167
           + YN +ID L  T    +  RL   M       + +        F  ++ + M    + +
Sbjct: 323 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 382

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------- 217
            +K    P++   + L++  C  GLVD AE + +  V +   P+  TY  L         
Sbjct: 383 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 442

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                + L+ M + G  P+  TY   ID FC+A   T A  L E M   G     P   T
Sbjct: 443 MVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGV---QPNVIT 499

Query: 275 YAIMIVALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           Y  +I        +EE   +L  +  +  C  D+  Y+ +++G+C  G++  A + LE +
Sbjct: 500 YRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 559

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLI 384
              G PP    Y   ++ LC  K   +A+ +   M +     P+ + Y  +I
Sbjct: 560 KQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVI 611



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%)

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +++T+   +  LC      EA   + +M + G  P+  TYN+LI+ + ++ +   A+   
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM + G A +V TY  +I G    +KV+ A  L  ++V  G       +++ L  L   
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 461 GDLGAIHKLSDHMRK 475
           G +   ++L D MR+
Sbjct: 126 GLMDEAYELLDEMRE 140


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 133/277 (48%), Gaps = 16/277 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P +   + L+D LCK G V  A+ + KR +   ++PN  TYN L             +  
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 428

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EEM   G  PD  TYNT ID  CK     EA  LF  M+ K     +P   TY+ +I  
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAK---FCNPDVITYSCLIGG 485

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + +R++   +L   M+    LPDV T+  ++EG C AG V++A + LEEM      PD
Sbjct: 486 FCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 545

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TY   +   C      EA R+  RM + GC P+V TY  LI  +   G+P  A+    
Sbjct: 546 VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLE 605

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           EM   G   +V TY  +I G      +EEA  +LE +
Sbjct: 606 EMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERL 642



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 158/378 (41%), Gaps = 55/378 (14%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           A RFF WA  Q  + H    YN + + L     +A++    C +L       K   P  +
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEAL----LRARRIDETCHIL-------KNGWPPGI 55

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
                            P +    +++  LCK G +D A                     
Sbjct: 56  ----------------TPNVFTYAVVIQGLCKSGDLDKA--------------------- 78

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             + LEEM + G  PD   YN  I   CKAR   +A D F  M  + + I      T+ I
Sbjct: 79  -CELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVI------TWTI 131

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           MI  L + +R+ E  +    M   G +P+  TY  ++ G C   KV  AY  L+EM   G
Sbjct: 132 MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 191

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P++VTY+  +   C     D A +L+ +M+E GC P++ TYN L+S     G  D A+
Sbjct: 192 LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 251

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           E   EM +RG   D  +Y  ++ GL    K++ A  + E+  N         + + +  L
Sbjct: 252 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 311

Query: 458 SVIGDLGAIHKLSDHMRK 475
              G L    KL + MR+
Sbjct: 312 CKAGRLDEACKLFEKMRE 329



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 16/298 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL- 217
           M LK + +       P++ A + L+  LCK G +D A  + ++++ N  +P+  T+  L 
Sbjct: 284 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALM 343

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                        Q LE M      P+  TY++ ID  CK   V +A ++F+ M  +G  
Sbjct: 344 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI- 402

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY  +I      + ++    L+  M  +GCLPD+ TY  +++G+C  G+  EA
Sbjct: 403 --EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 460

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   +M  K   PD++TY+C +   C  +  D A  L+  M++    P V T++ L+  
Sbjct: 461 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 520

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           Y   G  D A     EM    C+ DV TY  ++DG     ++ EA  +L+ +  +G +
Sbjct: 521 YCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQ 578



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 141/305 (46%), Gaps = 20/305 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           VD    + +Q  E       P +   N LL  LC+ GL+D A  +   ++ + ++P+  +
Sbjct: 212 VDTAYKLFRQMVEN---GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 268

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L             ++  E+       PD   Y+T I   CKA  + EA  LFE MR
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR 328

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
                   P   T+  ++  L + DR++E   +L  M +  C P+V TY  +++G+C  G
Sbjct: 329 ENSC---EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTG 385

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +V +A +  + M  +G  P++VTYN  +   C     D AL L   M   GC P + TYN
Sbjct: 386 QVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYN 445

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI    + G    A   + +M  + C  DV TY  +I G     +++ A  L ++++ +
Sbjct: 446 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 505

Query: 442 GLKLP 446
            + LP
Sbjct: 506 AV-LP 509



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 21/334 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           VD  L+++++ T        P+I   N L+D LCK G    A  +   +K K   P+  T
Sbjct: 422 VDSALLLMEEMT---ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 478

Query: 214 YNIL--GMQTLE----------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L  G   LE          +M++    PD  T++T ++ +C A +V +A  L E M 
Sbjct: 479 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 538

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
              ++  SP   TY  ++    +  RM E   +L  M   GC P+V TY  +++  C AG
Sbjct: 539 ---ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG 595

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTY 380
           K   AY+ LEEM   G  P+++TY   +   C   + +EA ++  R+  +  C   +  Y
Sbjct: 596 KPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAY 655

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-V 439
            +++      G    A E    + + G     D Y  +I GL    ++ +A  +LEE+ +
Sbjct: 656 RVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTL 715

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           ++  +     +++ + +L+  G     + L+D +
Sbjct: 716 SRKSRPNAEAYEAVIQELAREGRHEEANALADEL 749



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 120/292 (41%), Gaps = 26/292 (8%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTE 167
           + YN +ID L  T    +  RL   M       + +        F  ++ + M    + +
Sbjct: 442 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 501

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------- 217
            +K    P++   + L++  C  GLVD AE + +  V +   P+  TY  L         
Sbjct: 502 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 561

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                + L+ M + G  P+  TY   ID FC+A   T A  L E M   G     P   T
Sbjct: 562 MVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV---QPNVIT 618

Query: 275 YAIMIVALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           Y  +I        +EE   +L  +  +  C  D+  Y+ +++G+C  G++  A + LE +
Sbjct: 619 YRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 678

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLI 384
              G PP    Y   ++ LC  K   +A+ +   M +     P+ + Y  +I
Sbjct: 679 KQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVI 730


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 30/283 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           Y E I+ K QP +   N++++ALCK G ++ A  +                      +E+
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDV----------------------MED 248

Query: 225 MIQMGHAPDNFTYNTAIDTFCK----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           M   G++P+  +YNT ID +CK     +M    A L E +  +     SP   T+ I+I 
Sbjct: 249 MKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENE----VSPNLTTFNILID 304

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              ++D +     +   M++   +P+V TY  ++ G+C  GK+ EA    ++M + G  P
Sbjct: 305 GFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQP 364

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +++TY+  +   C N    EAL ++  +   G  P+ + YNMLI  Y +LG+ D  F   
Sbjct: 365 NLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALK 424

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM++ G   DV TY  +I GL     +E A  L +++ NKGL
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL 467



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 155/298 (52%), Gaps = 23/298 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E ++ +  P +   N+L+D   K   +  +  + K + ++ V PN  TYN L        
Sbjct: 286 EMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGG 345

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+  ++M+  G  P+  TY++ I+ FCK  M+ EA D+F+ ++ +G+    PT
Sbjct: 346 KINEAIGMR--DKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGT---RPT 400

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            + Y ++I A  +  ++++ F+L   M   G +PDV TY  ++ G+C  G +E A K  +
Sbjct: 401 TRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD 460

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           ++ NKG P D+VT++  ++  C      +A  L   M ++G  P   TYN+++  Y + G
Sbjct: 461 QLTNKGLP-DLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEG 519

Query: 392 EPDGAFETWHEMDK-RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
               A     +M+K R    +V +Y V++ G     K+E+A  LL E++ KGL +P R
Sbjct: 520 NLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL-VPNR 576



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 3/191 (1%)

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           FE  +  G      +A +   ++VAL++ +R  +   L   MI     P+V T+  V+  
Sbjct: 173 FEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINA 232

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD-NKNGD--EALRLYGRMIEVGC 373
           +C  GK+ +A   +E+M   GY P++V+YN  +   C    NG   +A  +   M+E   
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEV 292

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P++ T+N+LI  +++     G+ + + EM  +    +V TY  +I+GL +  K+ EA  
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIG 352

Query: 434 LLEEVVNKGLK 444
           + +++V+ G++
Sbjct: 353 MRDKMVSAGVQ 363



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N L+  LC+ G ++ A+ +  ++ NK  P+  T++IL                L
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLL 493

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +EM +MG  P + TYN  +  +CK   +  A ++   M  +          +Y +++   
Sbjct: 494 KEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRL--RMNVASYNVLLQGY 551

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            Q  ++E+   LL  M+  G +P+  TY E+++               EEM +KG+ PDI
Sbjct: 552 SQKGKLEDANMLLNEMLEKGLVPNRITY-EIVK---------------EEMVDKGFVPDI 595



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 16/186 (8%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-----------GMQ 220
           T+P     N+L+DA CK G +D    + + ++ + + P+  TYN L             +
Sbjct: 397 TRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAK 456

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L + +     PD  T++  ++ +C      +AA L + M   G     P   TY IM+ 
Sbjct: 457 KLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGL---KPRHLTYNIMMK 513

Query: 281 ALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
              +   ++   ++   M     L  +V++Y  +L+G    GK+E+A   L EM  KG  
Sbjct: 514 GYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLV 573

Query: 340 PDIVTY 345
           P+ +TY
Sbjct: 574 PNRITY 579


>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
          Length = 572

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 187/401 (46%), Gaps = 38/401 (9%)

Query: 71  ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY 130
           ALD  G   + + V  +L+R Q++ K AFR F WAG Q +Y+H    Y+ MI IL   + 
Sbjct: 129 ALDDCGFIPSPNLVQKLLRRLQYDGKAAFRVFQWAGSQPDYSHTVSVYHTMISILGVHRK 188

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE----KIKVKTQPEINALNL---- 182
             K + L+  M      + +  V    L++++K+Y      +  +KT   ++   L    
Sbjct: 189 FDKGWGLIRKM------HERAMVNRQTLMIMIKRYAAAHDARKAIKTFHAMDKFKLAADS 242

Query: 183 -----LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GM-----------QTLEE 224
                LL ALC+   V+ AE +    K        ++N++  G            +  EE
Sbjct: 243 DDFLCLLCALCRNMFVEEAEELIHFNKKCYPLETKSFNVILYGWCNIFVDVYQVKRLWEE 302

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M  +   PD F+Y T I  F KA    +   L++ M+ KG T   P  K Y  +I  L +
Sbjct: 303 MSNLCITPDAFSYTTVICCFSKAGKFYDVVRLYDEMKKKGFT---PNLKVYNAVIYVLSK 359

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              ++E  +L   +   G  P+  TY  ++  +C   K EEAY +L++M  +G+ P I  
Sbjct: 360 ERCVKEALNLFNKIREMGFHPNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVPTIDI 419

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+ F + +   +N     +L+ +M E GC P+++TY M I       + + AF+ W++M+
Sbjct: 420 YHAFFRFV---ENEGAICKLFDKMFENGCAPTMETYIMSIRRCCSWSDYENAFKLWNDME 476

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           K   + D   + ++++G     K EEAC    E+   G  L
Sbjct: 477 KHWFSADSSIHYLLLNGFLLNGKPEEACKCYREMKVNGFSL 517


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 197/425 (46%), Gaps = 35/425 (8%)

Query: 56  EAI--IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAH 113
           EAI  I ++     ++  L ++    + + V+ VL +      +A  FF WA  Q  + H
Sbjct: 59  EAICRILSTTPASTVDACLAAVPAKPSPELVLEVLNKLSNAGVLALSFFRWAEKQSEFKH 118

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR----NNKVFVPVDVLLMILKQYTEKI 169
              A++ +I+ L     K +QF+++ ++++ MK+     +  F  V       ++  E I
Sbjct: 119 TTEAFHALIEALG----KIRQFKMIWTLVNDMKQRKLLTSDTFSLVARRYARARKAKEAI 174

Query: 170 KV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM 219
           K          +P ++  N L+D LCK   V+ A  +  +++  ++ P+  +Y IL  G 
Sbjct: 175 KTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMRKLRLDPDIKSYTILLEGW 234

Query: 220 QTLEEMIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
              + +I++          G   D   Y   ++  CKA+   EA  L+  M+ +G     
Sbjct: 235 SQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARGV---R 291

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   Y  +I  L  + R++E          SG +P+  TY  V+   C + ++++AY+ 
Sbjct: 292 PSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYRM 351

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM--IEVGCWPSVQTYNMLISMY 387
           + EM   G  P+  T++  L  L   +  +EA  ++ RM   E GC PSV TY +++ M+
Sbjct: 352 VGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTYEIMVRMF 411

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
                 D A   W EM  +G    +  +  ++  L   SK++EAC   +E+++ G++ P 
Sbjct: 412 CNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEACKYFQEMLDVGIRPPA 471

Query: 448 RKFDS 452
           + F +
Sbjct: 472 KMFST 476



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY----NILGM-QTLEEMIQ 227
           Q ++ A  ++++A CK    D A  +   +K + V+P+ + Y    N LG  + L+E ++
Sbjct: 256 QLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALE 315

Query: 228 M-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                   G  P+  TYN  +  +C +  + +A  +   M+  G     P ++T+ I++ 
Sbjct: 316 FFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGI---GPNSRTFDIVLH 372

Query: 281 ALVQNDRMEECFSLLGHMINS--GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            L++  R+EE  S+   M     GC P VSTY+ ++   C    ++ A    +EM  KG 
Sbjct: 373 HLIKGRRIEEASSVFRRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGI 432

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            P +  ++  +  LC     DEA + +  M++VG  P  + ++ L     + G
Sbjct: 433 LPGMHMFSTLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAG 485


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +  K  P     N L+D  CK   V  A+   + ++ + +KPN  TYN L        
Sbjct: 263 EMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNG 322

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                +   ++M+ +G  P+  T+N  I+ FCK +M+ EA  LF+ +  +      P A 
Sbjct: 323 KLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLV---PNAI 379

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+  MI A  +   MEE F+L   M++ G  P+VSTY  ++ G+C    V  A K L EM
Sbjct: 380 TFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEM 439

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            N     D+VTYN  +   C +    +A +L G M+ VG  P+  TYN L+  Y   G  
Sbjct: 440 ENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNL 499

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A +   +M+K G   +V TY V+I G     K+E+A  LL E++ KGL      +D  
Sbjct: 500 KAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559

Query: 454 LMQL 457
            +++
Sbjct: 560 RLEM 563



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 155/327 (47%), Gaps = 19/327 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E IK + QP +   N+ ++ LCK G ++ AE + + +K     PN  TYN L      
Sbjct: 188 YKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCK 247

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L+EM+     P+  T+NT ID FCK   V  A + FE M+ +G    
Sbjct: 248 KGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQG---L 304

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  L  N +++E  +L   M+  G  P++ T+  ++ G C    ++EA K
Sbjct: 305 KPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARK 364

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +++  +   P+ +T+N  +   C     +E   L+  M++ G +P+V TYN LI+   
Sbjct: 365 LFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLC 424

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                  A +  +EM+      DV TY ++I G     +  +A  LL E++N G+K  + 
Sbjct: 425 RNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHV 484

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +++ +    + G+L A  K+   M K
Sbjct: 485 TYNTLMDGYCMEGNLKAALKVRTQMEK 511



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 189/417 (45%), Gaps = 35/417 (8%)

Query: 80  TTDSVVGVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRL 137
           TT   + + Q F    + ++  RFF W+  +   ++       ++ +L+++K  +K    
Sbjct: 41  TTKPAIFLDQLFNAGVDSELVLRFFQWSQKEFRISYGLETTGKVLHLLANSKKYSK---- 96

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINAL--NLLLDALCKCGLVDY 195
           V S LD + +N K  V      ++L           +P  NAL  ++L+ A      +  
Sbjct: 97  VRSFLDKLVKNEKHTVSSVFHSLLLGG--------DRPCANALITDMLVLAYVTNLEIHS 148

Query: 196 AETICKRVKN-KVKPNANTYNIL------GMQTLE------EMIQMGHAPDNFTYNTAID 242
           A  + +RV++   K + N+ N L      G +T E      EMI+    P+  T+N  I+
Sbjct: 149 ACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFIN 208

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND---RMEECFSLLGHMI 299
             CKA  + +A D+ E ++  G    SP   TY  +I    +     +M    ++L  M+
Sbjct: 209 GLCKAGKLNKAEDVIEDIKAWGF---SPNIVTYNTLIDGHCKKGSAGKMYRADAILKEML 265

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
            +   P+  T+  +++G C    V  A    EEM  +G  P+IVTYN  +  L +N   D
Sbjct: 266 ANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLD 325

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EA+ L+ +M+ +G  P++ T+N LI+ + +      A + + ++ ++    +  T+  MI
Sbjct: 326 EAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMI 385

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           D       +EE   L   ++++G+      ++  +  L    ++ A  KL + M  +
Sbjct: 386 DAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENY 442


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 158/362 (43%), Gaps = 44/362 (12%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  +FF WA  + NY H+   Y  +I  L   +    Q+  +  M+  M RN        
Sbjct: 105 VKMQFFRWAAKRRNYEHDTSTYMALIRCLEVVE----QYGEMWKMIQEMVRN-------- 152

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
                       I V T  E   L+ ++  L    +V  A  I  ++K  K +P A  YN
Sbjct: 153 -----------PICVVTPTE---LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYN 198

Query: 216 ILGMQTLEE------------MIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            + +  + E            M   GH  PD  TY+  I  FCK      A  L   M+ 
Sbjct: 199 SMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKE 258

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     PT K Y ++I    + D +    SL   M +  C PDV TY E++ G+  AG+
Sbjct: 259 NGM---QPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGR 315

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EAY F  EM  +G  PD V  N  +  L      D+A++L+  M  + C PSV TYN 
Sbjct: 316 IDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNT 375

Query: 383 LISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +I   FE         +W E M + G +    TY ++IDG    +++E+A  LLEE+  K
Sbjct: 376 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 435

Query: 442 GL 443
           G 
Sbjct: 436 GF 437



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 19/296 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTL---------- 222
           +P+   +N +++ L K G +D A  + + +   +  P+  TYN + ++ L          
Sbjct: 332 RPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTI-IKALFESKSRASEV 390

Query: 223 ----EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
               E M + G +P +FTY+  ID FCK   + +A  L E M  KG     P    Y  +
Sbjct: 391 PSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF---PPCPAAYCSL 447

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I AL +  R +    L   +  +        Y  +++ +  AG++++A    +EM   G 
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 507

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  YN  +  L      DEAL    RM E GC P + +YN++++   + G P  A E
Sbjct: 508 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 567

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
               M +     DV +Y  ++  L      EEA  L+EE+   G +     + S L
Sbjct: 568 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSIL 623



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 17/275 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           +K + E   ++  P +   N ++ AL   K    +      +  ++ + P++ TY+IL  
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 414

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  LEEM + G  P    Y + ID   KA+    A +LF+ ++      
Sbjct: 415 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK---ENC 471

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            S +A+ YA+MI  L +  R+++  ++   M   GC PDV  Y  ++ G+   G ++EA 
Sbjct: 472 GSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEAL 531

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             +  M   G  PDI +YN  L  L        A+ +   M +    P V +YN ++   
Sbjct: 532 STMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 591

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              G  + A +   EM+  G   D+ TY  +++ +
Sbjct: 592 SHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAI 626



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 279 IVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +V ++ N +M  +  ++   +    C P    Y  ++  +   G+  + ++   EM  +G
Sbjct: 165 VVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEG 224

Query: 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           +  PD +TY+  +   C     D A +L   M E G  P+ + Y MLI+++F+L +  GA
Sbjct: 225 HCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGA 284

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + EM  + C  DV TY  +I GL    +++EA     E+  +G +      D+ +M 
Sbjct: 285 LSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP-----DTVVMN 339

Query: 457 LSVIGDLGAIHKLSDHMRKF 476
            ++I  LG   +L D M+ F
Sbjct: 340 -NMINFLGKAGRLDDAMKLF 358


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 137/538 (25%), Positives = 221/538 (41%), Gaps = 75/538 (13%)

Query: 5   HLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDV----AKLYEAIID 60
           HL  P  A        + + S   +   +P    +   + SD  S+     +     I+ 
Sbjct: 35  HLRPPPHASKLGSTSTVGSNSRWVFTTPIPPEWVEPLYDLSDLASNPQPQPSPWVNQILK 94

Query: 61  NSNAYDNMEKALDS----LGVPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHE 114
             +   NME  LDS      + L+ + V  VL+      K  IAFRFF WAG Q NY H+
Sbjct: 95  LLDGSVNMESNLDSYCSKFLIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHK 154

Query: 115 PLAYNLMIDILSST-----------KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
              Y  +ID+LS +           ++K K F +     + + R+      V+ LL + +
Sbjct: 155 IECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWR 214

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL----- 217
           +  E      +P +   N LL+ L     ++ AE + + ++  K+ P+  +YN +     
Sbjct: 215 RMKES---GIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYC 271

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   M+   +M +    PD  TY T I              L++ M  +G  I  P
Sbjct: 272 KAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEI-PP 330

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
            A  Y+++I  L ++ R  E  S+  +M   GC  +V+ Y  +++     G V EA    
Sbjct: 331 HA--YSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLF 388

Query: 331 EEMGNKGYPPDIVTYNCFLKVLC----------------DN-----------------KN 357
           E M  +G+ PD VTY   +  LC                DN                 K 
Sbjct: 389 ERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKA 448

Query: 358 G--DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           G  DEA + +  M+E GC      YN LI    + G+ + A   +  M+K GC Q V TY
Sbjct: 449 GRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTY 508

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            ++I GLF   + EEA  L + +++KG+      F +  + L + G +    K+ D +
Sbjct: 509 TILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDEL 566



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 54/248 (21%)

Query: 174 QPEINALNLLLDALCKCGLVDYAET---ICKRVKNKVKPNANTYNIL------------G 218
           +P+     ++++ LCK G +D A      CK   N+V  NA  Y+ L             
Sbjct: 397 EPDDVTYGVIVNGLCKSGRLDEAVEYFEFCK--DNEVAVNAMFYSSLIDGLGKAGRVDEA 454

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +  EEM++ G   D++ YN  ID   K+  + EA  LF+ M  +G      T  TY I+
Sbjct: 455 EKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGC---DQTVYTYTIL 511

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV--------------- 323
           I  L +  R EE   L   MI+ G  P  ++++ +  G+CL+GKV               
Sbjct: 512 ISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGV 571

Query: 324 -------------------EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
                              E+A K  + + ++G           +  L    N D A++L
Sbjct: 572 IPETAFEDMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGNADLAMKL 631

Query: 365 YGRMIEVG 372
               I +G
Sbjct: 632 MHSKIGIG 639


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 154/320 (48%), Gaps = 16/320 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           +++  +P+I A N ++D+LCK   V+ A    K ++ K ++PN  TY  L          
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + L +MI+    P+  TY+  +D F K   V EA +LFE M         P   TY
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI---DPDIVTY 298

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L  +DR++E   +   M++ GCL DV +Y  ++ G C A +VE+  K   EM  
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G   + VTYN  ++      + D+A   + +M   G  P + TYN+L+    + GE + 
Sbjct: 359 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A   + +M KR    D+ TY  +I G+    KVEEA  L   +  KGLK     + + + 
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
            L   G L  +  L   M++
Sbjct: 479 GLCTKGLLHEVEALYTKMKQ 498



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 147/325 (45%), Gaps = 16/325 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI------- 216
           +++ +K +  P I   N LL A+ K    D   ++ K+++   ++ +  T+NI       
Sbjct: 73  FSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCC 132

Query: 217 -----LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                L +  L +M+++G+ PD  T  + ++ FC+   V++A  L + M   G     P 
Sbjct: 133 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY---KPD 189

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I +L +  R+ + F     +   G  P+V TY  ++ G+C + +  +A + L 
Sbjct: 190 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 249

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  K   P+++TY+  L     N    EA  L+  M+ +   P + TY+ LI+      
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 309

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D A + +  M  +GC  DV +Y  +I+G     +VE+   L  E+  +GL      ++
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKF 476
           + +      GD+    +    M  F
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFF 394



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 5/204 (2%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ +   L   M+ S   P +  +  +L  +    K +      ++M   G   D+ T+N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       AL + G+M+++G  P   T   L++ +        A     +M + 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDL 463
           G   D+  Y  +ID L    +V +A    +E+  KG++   + Y    + L   S   D 
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD- 243

Query: 464 GAIHKLSDHMRKFYNPVIARRLAL 487
            A   LSD ++K   P +    AL
Sbjct: 244 -AARLLSDMIKKKITPNVITYSAL 266


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 139/289 (48%), Gaps = 20/289 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------G 218
           K  P++   N+L+D LCK    D A E + + V   V P+  T+N +             
Sbjct: 5   KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 64

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
              L  M +    P   TYNT I   CK + V  A  L +   + G     P   TY+I+
Sbjct: 65  HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFV---PDVVTYSIL 121

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
              L +  R++E F L+  M  +GC P++ TY  +++G+C A K E+AY+ LE + + G+
Sbjct: 122 ADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF 181

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+VTY   +  LC     D+AL++   M++ GC PSV TY  L+      G  D A  
Sbjct: 182 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHH 241

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            + EM  + C  D   Y  +++G    S+ +EA    ++VV+     PY
Sbjct: 242 IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA----QKVVDGIRGTPY 286



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 173/392 (44%), Gaps = 38/392 (9%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-------------- 161
           + YN +ID L       K + L+ +++      +  FVP  V   I              
Sbjct: 151 VTYNTLIDGLCKASKTEKAYELLETLV------SSGFVPDVVTYTIIVDGLCKEGRLDKA 204

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK------------VKP 209
           LK     +K    P +     L++ LC+ G VD A  I K + +K            V  
Sbjct: 205 LKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNG 264

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
              +      Q + + I+    P    YN  +D +CK   + E  ++FE M  +G     
Sbjct: 265 YCKSSRTKEAQKVVDGIR--GTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCV--- 319

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P  KTY I++  L ++ +++E F  L  M ++GC+PDV +Y  +++G+  A K +EA + 
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 379

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L++M   G PPD VTYN  +   C  +  D+A+ +   MI+ G  P   TYN LIS   +
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 439

Query: 390 LGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                 A+E  HEM + GC      TY  +ID L     +++A  L++ +   G++    
Sbjct: 440 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV 499

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480
            ++ ++ +L   G L     L   M    + V
Sbjct: 500 TYNIFIDRLCKEGRLDEASSLLSEMDTLRDEV 531



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 3/243 (1%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           APD FTYN  ID  CKA    +A+++   M  +G T   P   T+  ++  L +  + E 
Sbjct: 7   APDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVT---PDTVTFNSIMDGLCKAGKFER 63

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             SLL  M    C P   TY  ++ G+C    V+ A   ++E  + G+ PD+VTY+    
Sbjct: 64  AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILAD 123

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            LC     DEA  L   M   GC P++ TYN LI    +  + + A+E    +   G   
Sbjct: 124 GLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVP 183

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           DV TY +++DGL    ++++A  ++E ++ +G       + + +  L   G +   H + 
Sbjct: 184 DVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIF 243

Query: 471 DHM 473
             M
Sbjct: 244 KEM 246



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 157/354 (44%), Gaps = 48/354 (13%)

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161
           F+ + H      + ++YN++ID L    +KA + +    +LD M                
Sbjct: 344 FLESMHSAGCVPDVVSYNIIIDGL----FKASKPKEARQVLDQM---------------- 383

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--- 217
                  I+    P+    N L+   CK    D A  I K  +K  V P+  TYN L   
Sbjct: 384 -------IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 436

Query: 218 ---------GMQTLEEMIQMGHAPDN-FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      + + EM++ G       TYNT ID  CK   + +A  L + M   G  +
Sbjct: 437 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM--TGHGV 494

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            + T  TY I I  L +  R++E  SLL  M     L D  +Y  V+ G+C A +++ A 
Sbjct: 495 EANTV-TYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAEQLDRAS 550

Query: 328 KFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           K   EM   KG      T+N  +      K  DEAL L   M++ GC PSV TYNM+I+ 
Sbjct: 551 KLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITC 610

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             +L + D A+E + EM  RG      +Y V+I GL    + +EA  +LEE+ +
Sbjct: 611 LCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMAS 664



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 21/283 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N+++D LCK G VD A    + + +    P+  +YNI+              Q 
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 379

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++MIQ G  PD  TYNT +  FCK     +A  + + M   G     P   TY  +I  
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV---DPDNVTYNTLISG 436

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDV-STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           L Q +R+ + + L+  M+ +GC+    +TY  +++ +C  G +++A   ++ M   G   
Sbjct: 437 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 496

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN F+  LC     DEA  L   + E+       +Y  +I    +  + D A +  
Sbjct: 497 NTVTYNIFIDRLCKEGRLDEASSL---LSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLA 553

Query: 401 HEMDK-RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            EM   +G      T+ ++ID      +++EA  LLE +V +G
Sbjct: 554 REMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRG 596



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 14/204 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEE---------MIQMGH 230
           N ++D LCK G +  A  +   +  + V+ N  TYNI   +  +E         + +M  
Sbjct: 467 NTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT 526

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             D  +Y T I   CKA  +  A+ L  E +  KG  I   T+ T+ ++I A  +  R++
Sbjct: 527 LRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCI---TSHTFNLLIDAFTKTKRLD 583

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +LL  M+  GC P V TY  V+  +C   KV++A++  +EM  +G     V+Y   +
Sbjct: 584 EALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLI 643

Query: 350 KVLCDNKNGDEALRLYGRMIEVGC 373
             LC    G EAL++   M    C
Sbjct: 644 YGLCGQGRGKEALQVLEEMASSDC 667



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 149/361 (41%), Gaps = 49/361 (13%)

Query: 44  SSDSVSDVAKLYEAIIDN---SNAYDNMEKALDSL---GVPLTTDSVVGVLQRFQFEEKI 97
           S+  V DV   Y  IID    ++      + LD +   G+P    +   ++ +F  EE+ 
Sbjct: 350 SAGCVPDVVS-YNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 408

Query: 98  -----AFRFFMWAG-HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151
                  +  + AG   DN     + YN +I  LS T      + L+  ML    RN  V
Sbjct: 409 DDAVGILKNMIKAGVDPDN-----VTYNTLISGLSQTNRLGDAYELMHEML----RNGCV 459

Query: 152 FVPVDVLLMILKQYTEKIKVKTQ-----------PEINAL--NLLLDALCKCGLVDYAET 198
                    I+ +  ++  +K              E N +  N+ +D LCK G +D A +
Sbjct: 460 VSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASS 519

Query: 199 ICKRVKNKVKPNANTYNILGMQTLE----------EMIQM-GHAPDNFTYNTAIDTFCKA 247
           +   +       + T  I+G+   E          EM+ + G    + T+N  ID F K 
Sbjct: 520 LLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 579

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           + + EA  L E M  +G    SP+  TY ++I  L + D++++ + L   M   G +   
Sbjct: 580 KRLDEALTLLELMVQRGC---SPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASS 636

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            +Y  ++ G+C  G+ +EA + LEEM +     D +        L     G+EA  L  R
Sbjct: 637 VSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRR 696

Query: 368 M 368
           M
Sbjct: 697 M 697



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   PD+ TYN  +  LC     D+A  +   M++ G  P   T+N ++    + G+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + A      M +R C     TY  +I GL     V+ A  L++E V+ G 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGF 111



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M++R  A DV TY ++IDGL   SK ++A  +L E+V++G+      F+S +  L   G 
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 463 LGAIHKL 469
               H L
Sbjct: 61  FERAHSL 67


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 198/437 (45%), Gaps = 38/437 (8%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDS----LGVPLTTDSVVGVLQRFQFEEKIA 98
           E +  ++    +    I   N+ D++ ++L S     G+ L+ + +  +L R++ + K A
Sbjct: 44  EQTQDLTRSVDILTTKIGKGNSEDDILQSLISDEGVNGIHLSENLINRLLFRYKDDWKSA 103

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
              F WAG   N+ H   +Y++M+DIL   K   K   ++  M             V   
Sbjct: 104 LAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMRQESLITLNTIAKVMRR 163

Query: 159 LMILKQYTEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211
            +  +Q+ + +++         +    ++N+LLD LCK   V+ A  I   +K+ + PNA
Sbjct: 164 FVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLCKEKFVEQAREIYLELKHYIAPNA 223

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
           +T+NIL               T++EM   G  P   +Y+T I  +C+ +      DL + 
Sbjct: 224 HTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDE 283

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M+ +     SP   TY  ++ AL + ++ EE   ++  M   GC PD   +  ++  +  
Sbjct: 284 MQAQN---CSPNVVTYTTIMCALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGR 340

Query: 320 AGKVEEA-YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSV 377
           AG++++A + F   M      P+  TYN  + + C     + A  +   M + G C P +
Sbjct: 341 AGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERAFGILKEMEKSGLCKPDI 400

Query: 378 QTYNMLISMYFELGEPDGAFETWHE------MDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           QTY+ LI   F++ E D    TW        ++K     D+ TY ++I GL+   + + A
Sbjct: 401 QTYHPLIKSCFKMREID----TWLNDILNDMVNKYHIGLDLSTYTLLIHGLYRADRCKWA 456

Query: 432 CFLLEEVVNKGLKLPYR 448
             L EE+ ++ +   Y+
Sbjct: 457 FDLFEEMADQDIVPRYK 473



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 7/229 (3%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           +Y+  +D   + + + +  ++ E MR +    S  T  T A ++   V   + ++   + 
Sbjct: 122 SYDMMVDILGRMKAMDKMREILEEMRQE----SLITLNTIAKVMRRFVGARQWKDAVRIF 177

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCD 354
             +   G   +  +   +L+ +C    VE+A +   E+  K Y  P+  T+N  +   C+
Sbjct: 178 DDLQFLGLEKNTESMNVLLDTLCKEKFVEQAREIYLEL--KHYIAPNAHTFNILIHGWCN 235

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
            +  +EA      M   GC P V +Y+ +I  Y +    D  ++   EM  + C+ +V T
Sbjct: 236 IRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVT 295

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           Y  ++  L    K EEA  ++E +   G +     F+S +  L   G +
Sbjct: 296 YTTIMCALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRI 344


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 154/320 (48%), Gaps = 16/320 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           +++  +P+I A N ++D+LCK   V+ A    K ++ K ++PN  TY  L          
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + L +MI+    P+  TY+  +D F K   V EA +LFE M         P   TY
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI---DPDIVTY 298

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + ++  L  +DR++E   +   M++ GCL DV +Y  ++ G C A +VE+  K   EM  
Sbjct: 299 SSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G   + VTYN  ++      + D+A   + +M   G  P + TYN+L+    + GE + 
Sbjct: 359 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A   + +M KR    D+ TY  +I G+    KVEEA  L   +  KGLK     + + + 
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
            L   G L  +  L   M++
Sbjct: 479 GLCTKGLLHEVEALYTKMKQ 498



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 147/325 (45%), Gaps = 16/325 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI------- 216
           +++ +K +  P I   N LL A+ K    D   ++ K+++   ++ +  T+NI       
Sbjct: 73  FSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCC 132

Query: 217 -----LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                L +  L +M+++G+ PD  T  + ++ FC+   V++A  L + M   G     P 
Sbjct: 133 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY---KPD 189

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I +L +  R+ + F     +   G  P+V TY  ++ G+C + +  +A + L 
Sbjct: 190 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 249

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  K   P+++TY+  L     N    EA  L+  M+ +   P + TY+ L++      
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHD 309

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D A + +  M  +GC  DV +Y  +I+G     +VE+   L  E+  +GL      ++
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKF 476
           + +      GD+    +    M  F
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFF 394



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 5/204 (2%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ +   L   M+ S   P +  +  +L  +    K +      ++M   G   D+ T+N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       AL + G+M+++G  P   T   L++ +        A     +M + 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDL 463
           G   D+  Y  +ID L    +V +A    +E+  KG++   + Y    + L   S   D 
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD- 243

Query: 464 GAIHKLSDHMRKFYNPVIARRLAL 487
            A   LSD ++K   P +    AL
Sbjct: 244 -AARLLSDMIKKKITPNVITYSAL 266


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 195/420 (46%), Gaps = 33/420 (7%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           ++V K+   + +   + +N+ +AL+     ++   V  +L+RF  +   A+  F WA  Q
Sbjct: 141 NEVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQ 200

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK----- 163
             Y H P +YN M+DIL     KAK FRL+  ++D M       V ++ +  +++     
Sbjct: 201 IPYRHSPESYNSMVDILG----KAKNFRLMWELVDEMNHLAGS-VSLETMSKVIRRLARA 255

Query: 164 -QYTEKI-------KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
            ++ E I       K     +  A+N+L+DAL K   V+ A  + + +K  +  N  ++N
Sbjct: 256 GRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFN 315

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           +L              + + E+ + G  PD  +Y   I+  C+ +       +   M  K
Sbjct: 316 VLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHK 375

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   T+ I++ AL +  ++ E   +   M   GC+PD S Y  ++  +  AG++
Sbjct: 376 G---CKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRL 432

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +  + +E+M  +G  PD++TYN  +   C +   + AL L  +M EV C P ++TY+ L
Sbjct: 433 TDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPL 492

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + M+               M K   + +  TY +++ GL +  K+  AC    E+++K +
Sbjct: 493 LKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAM 552



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 16/223 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P++ +    ++A C+       + +  ++++K  KPN  T+ I+             ++
Sbjct: 343 EPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALK 402

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E+M + G  PD+  Y++ I    KA  +T+  ++ E M  +G T   P   TY  +I 
Sbjct: 403 VYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVT---PDVLTYNTLIS 459

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
               + + E   +LL  M    C PD+ TY  +L+  C   +++     L+ M       
Sbjct: 460 CACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSI 519

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +  TY   ++ LC+N     A   +G M+     P   T+ ML
Sbjct: 520 EAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 562



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 40/241 (16%)

Query: 123 DILSSTKY-----KAKQFRLVCSMLDYM-----KRNNKVFVPVDVLLMILKQYTEKIKVK 172
           D++S T +     + K FR V  +L  M     K N   F  +   L   KQ  E +KV 
Sbjct: 345 DVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVY 404

Query: 173 TQ-------PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------- 217
            +       P+ +  + L+  L K G L D  E +    K  V P+  TYN L       
Sbjct: 405 EKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAH 464

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +  L +M ++   PD  TY+  +  FC+ + +     L + M     +I    A
Sbjct: 465 SQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIE---A 521

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TYAI++  L +N ++    S  G M++   +P  ST+K + E +       E    LEE
Sbjct: 522 GTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEEL-------ERKSMLEE 574

Query: 333 M 333
           M
Sbjct: 575 M 575


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 191/440 (43%), Gaps = 56/440 (12%)

Query: 87  VLQRFQFEEKI--AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTK------YKAKQFRL- 137
           VL+R + E  I  A  +F    +  ++ H PL Y +MI+ L+S +      Y  +Q +L 
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 138 --VCS--------------------------MLDY-MKRNNKVFVPV-DVLL------MI 161
              CS                          M D+ +K   K++  + D LL      MI
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
              Y+   K   +P +   N+LL ALCK   VD A  +   + +K   P+  +Y  L   
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               G       + M   P    YN  I+  CK     EA  L + M  KG     P   
Sbjct: 226 LCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI---DPNVI 282

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I AL     +E   ++L  M   GC P++ T+  +++G  L G   EA  F + M
Sbjct: 283 SYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRM 342

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P++V YN  +  LC  ++  +A+ ++ +M   GC P+V+TY+ LI  Y + G+ 
Sbjct: 343 IREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDL 402

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           DGA E W+ M   GC  +V  Y  M+D L   S   +A  L+E +  +        F+++
Sbjct: 403 DGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           +  L   G +    K+ D M
Sbjct: 463 IKGLCGSGRVDWAIKVFDQM 482



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 172/417 (41%), Gaps = 32/417 (7%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEP--LAYNLMIDILS-------S 127
           VP+    + GV + + FEE  AF+         N   +P  ++Y  +I+ LS       S
Sbjct: 246 VPVYNALINGVCKEYTFEE--AFQLL---DEMMNKGIDPNVISYTTIINALSDAGNVELS 300

Query: 128 TKYKAKQFRLVCS-MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
               AK F   CS  L       K F         L  +   I+    P + A N L+  
Sbjct: 301 LAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHG 360

Query: 187 LC-KCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD 233
           LC K  L D      +   N   PN  TY+ L              +    MI  G  P+
Sbjct: 361 LCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPN 420

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              Y   +D  C+  M  +A  L E M+ +      P   T+   I  L  + R++    
Sbjct: 421 VVAYTCMVDVLCRNSMFNQAYCLIENMQVENC---PPNTVTFNTFIKGLCGSGRVDWAIK 477

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +   M NSGC P+ +TY E+L+ +    +  EA+  +++M ++G   ++VTYN  +   C
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                 EAL L G+M+  G  P   T N++I  Y + G+ + A +    +       D+ 
Sbjct: 538 CAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDII 597

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLGAIHKL 469
            Y  +I G+     VEEA   L  ++++G+      ++  +  L S +G  GA+  L
Sbjct: 598 AYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFL 654



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI------------LGMQT 221
           P +   N L++ +CK    + A  +   + NK + PN  +Y              L +  
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M   G +P+  T+ + I  F       EA D ++ M  +G     P    Y  ++  
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV---PNVVAYNALMHG 360

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L     + +  S+   M  +GC P+V TY  +++G   AG ++ A +    M   G  P+
Sbjct: 361 LCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPN 420

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y C + VLC N   ++A  L   M    C P+  T+N  I      G  D A + + 
Sbjct: 421 VVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFD 480

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M   GC  +  TY  ++D L    +  EA  L++++ ++G++L    +++ +      G
Sbjct: 481 QMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAG 540

Query: 462 DLGAIHKLSDHM 473
            LG   +L   M
Sbjct: 541 MLGEALELLGKM 552



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 16/211 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P     N  +  LC  G VD+A  +  ++ N    PN  TYN L                
Sbjct: 454 PNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGL 513

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++M   G   +  TYNT I  +C A M+ EA +L   M  +G+    P A T  I+I A
Sbjct: 514 VKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGT---KPDAITVNIVIDA 570

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++     L+  +      PD+  Y  ++ G+C    VEEA  +L  M ++G  P+
Sbjct: 571 YCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPN 630

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           + T+N  ++ L  N     A++    ++  G
Sbjct: 631 VATWNVLVRHLFSNMGHSGAVQFLDAVLGSG 661


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 191/440 (43%), Gaps = 56/440 (12%)

Query: 87  VLQRFQFEEKI--AFRFFMWAGHQDNYAHEPLAYNLMIDILSS------TKYKAKQFRL- 137
           VL+R + E  I  A  +F    +  ++ H PL Y +MI+ L+S       +Y  +Q +L 
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 138 --VCS--------------------------MLDY-MKRNNKVFVPV-DVLL------MI 161
              CS                          M D+ +K   K++  + D LL      MI
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
              Y+   K   +P +   N+LL ALCK   VD A  +   + +K   P+  +Y  L   
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               G       + M   P    YN  I+  CK     EA  L + M  KG     P   
Sbjct: 226 LCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI---DPNVI 282

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I AL     +E   ++L  M   GC P++ T+  +++G  L G   EA  F + M
Sbjct: 283 SYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRM 342

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P++V YN  +  LC  ++  +A+ ++ +M   GC P+V+TY+ LI  Y + G+ 
Sbjct: 343 IREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDL 402

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           DGA E W+ M   GC  +V  Y  M+D L   S   +A  L+E +  +        F+++
Sbjct: 403 DGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           +  L   G +    K+ D M
Sbjct: 463 IKGLCGSGRVDWAIKVFDQM 482



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 172/418 (41%), Gaps = 34/418 (8%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFF---MWAGHQDNYAHEPLAYNLMIDILS------- 126
           VP+    + GV + + FEE  AF+     M  G   N     ++Y  +I+ LS       
Sbjct: 246 VPVYNALINGVCKEYTFEE--AFQLLDEMMNKGIDPNV----ISYTTIINALSDAGNVEL 299

Query: 127 STKYKAKQFRLVCS-MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLD 185
           S    AK F   CS  L       K F         L  +   I+    P + A N L+ 
Sbjct: 300 SLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMH 359

Query: 186 ALC-KCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP 232
            LC K  L D      +   N   PN  TY+ L              +    MI  G  P
Sbjct: 360 GLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHP 419

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           +   Y   +D  C+  M  +A  L E M+ +      P   T+   I  L  + R++   
Sbjct: 420 NVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC---PPNTVTFNTFIKGLCGSGRVDWAI 476

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            +   M NSGC P+ +TY E+L+ +    +  EA+  +++M ++G   ++VTYN  +   
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGY 536

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C      EAL L G+M+  G  P   T N++I  Y + G+ + A +    +       D+
Sbjct: 537 CCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDI 596

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLGAIHKL 469
             Y  +I G+     VEEA   L  ++++G+      ++  +  L S +G  GA+  L
Sbjct: 597 IAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFL 654



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 16/303 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI------------LGMQT 221
           P +   N L++ +CK    + A  +   + NK + PN  +Y              L +  
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M   G +P+  T+ + I  F       EA D ++ M  +G     P    Y  ++  
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV---PNVVAYNALMHG 360

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L     + +  S+   M  +GC P+V TY  +++G   AG ++ A +    M   G  P+
Sbjct: 361 LCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPN 420

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y C + VLC N   ++A  L   M    C P+  T+N  I      G  D A + + 
Sbjct: 421 VVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFD 480

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M   GC  +  TY  ++D L    +  EA  L++++ ++G++L    +++ +      G
Sbjct: 481 QMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAG 540

Query: 462 DLG 464
            LG
Sbjct: 541 MLG 543


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 17/278 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P++ + ++L+D  CK   +  AE + K++ +    PN  TYN                  
Sbjct: 480 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 539

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM+  G +PD  TY+T I  F  AR   +A +LFE M ++G     P A TY  ++  
Sbjct: 540 YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGC---RPNAVTYNCLLHG 596

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  + +E   L   M+  GC PD  TY  +L G C  GK+E+A +  +EM +KG+ PD
Sbjct: 597 LCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 656

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V YNC LK         EA +L+  M+   C P   ++N++I    +    D A E + 
Sbjct: 657 VVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFE 716

Query: 402 EMDK-RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            M++  GC+ D+ TY  +I GL    ++ EA  + +E+
Sbjct: 717 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 754



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 145/284 (51%), Gaps = 17/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------GMQTLEE 224
           QP     + ++  LCK G VD A ++ +  +K    P+  T+++L         +Q  +E
Sbjct: 371 QPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE 430

Query: 225 MIQ------MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +Q         +   F+YN+ +++ CKA+ V +A  +F  M ++ S +  P   +Y+I+
Sbjct: 431 FLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFV--PDVVSYSIL 488

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I    + D +     L   MI+  C+P+V+TY   L G+   G++ +A    EEM   G 
Sbjct: 489 IDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGC 548

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD++TY+  +      +  D+A  L+  MI  GC P+  TYN L+    +  +PD A E
Sbjct: 549 SPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHE 608

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            + +M +RGC  D  TY  ++ G  +  K+E+A  + +E+V+KG
Sbjct: 609 LFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 652



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 143/306 (46%), Gaps = 22/306 (7%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT- 213
           VD  L +L+     IK    P++   ++L++ LCK   +  A+   + +  K+   +++ 
Sbjct: 390 VDSALSLLETM---IKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSC 446

Query: 214 --YNIL------------GMQTLEEMI-QMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             YN L                   M+ +    PD  +Y+  ID FCK   +  A  L++
Sbjct: 447 FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYK 506

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M         P   TY   +  L++  R+ +   +   M+ +GC PDV TY  ++ G  
Sbjct: 507 QMIDLNCV---PNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFS 563

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
           LA K ++A++  E M ++G  P+ VTYNC L  LC     DEA  L+ +M+E GC P   
Sbjct: 564 LARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRV 623

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  L+  +  +G+ + A E + EM  +G   DV  Y  ++ G F   K  EA  L + +
Sbjct: 624 TYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVM 683

Query: 439 VNKGLK 444
           V++  K
Sbjct: 684 VSRQCK 689



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 129/272 (47%), Gaps = 17/272 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL--GMQTLEE----------MI 226
           N LL++LCK   V  A  I   +  +    P+  +Y+IL  G   ++E          MI
Sbjct: 450 NSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMI 509

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
            +   P+  TYN  ++   +   + +A  ++E M   G    SP   TY+ +I       
Sbjct: 510 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGC---SPDVITYSTLIHGFSLAR 566

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           + ++   L   MI+ GC P+  TY  +L G+C   K +EA++   +M  +G  PD VTY 
Sbjct: 567 KHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYT 626

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C+    ++A+ ++  M+  G  P V  YN L+  +F  G+P  A + +  M  R
Sbjct: 627 TLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSR 686

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            C  D  ++ +MIDGL    ++++A  + E +
Sbjct: 687 QCKPDTVSHNIMIDGLSKAKRLDDAVEVFERM 718



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 151/314 (48%), Gaps = 16/314 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++L+  L + G +D AE  C  +  + ++P++ T + +             +  LE MI+
Sbjct: 343 DMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIK 402

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G+ PD  T++  I+  CKA  + EA +  + M  K  +  S +  +Y  ++ +L +  +
Sbjct: 403 RGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRK-ISSRSSSCFSYNSLLNSLCKAKK 461

Query: 288 MEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           + + F++   M++    +PDV +Y  +++G C   ++  A K  ++M +    P++ TYN
Sbjct: 462 VHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYN 521

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
            FL  L       +A  +Y  M+  GC P V TY+ LI  +    + D A E +  M  R
Sbjct: 522 AFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISR 581

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GA 465
           GC  +  TY  ++ GL   SK +EA  L  ++V +G       + + L     +G +  A
Sbjct: 582 GCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQA 641

Query: 466 IHKLSDHMRKFYNP 479
           +    + + K ++P
Sbjct: 642 VEVFDEMVSKGHDP 655



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 17/234 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           Y E +     P++   + L+         D A  + +  +    +PNA TYN L      
Sbjct: 540 YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCK 599

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +   +M++ G  PD  TY T +  FC    + +A ++F+ M +KG     P 
Sbjct: 600 ESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH---DPD 656

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  ++    +  +  E   L   M++  C PD  ++  +++G+  A ++++A +  E
Sbjct: 657 VVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFE 716

Query: 332 EM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            M  + G  PD+VTYN  +  LC  +   EA++++  +  +   P    +N+L+
Sbjct: 717 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLL 770



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 133/326 (40%), Gaps = 63/326 (19%)

Query: 203 VKNKVKPNANTYN--ILGMQTLE----------EMIQMGHAP-DNFTYNTAIDTFCKARM 249
           VK+  KP+A  Y+  +L    LE          EM     AP +N  +   +   CK+  
Sbjct: 261 VKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGK 320

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM----EECFSLLGHMINSGCLP 305
           + +A   FE  RT   ++SS +   Y ++I  L+++ R+    E C  + G  I     P
Sbjct: 321 IEQA---FEACRTMQESLSS-SQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQ----P 372

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT--------------------- 344
              T   V++ +C AG+V+ A   LE M  +GY PD+ T                     
Sbjct: 373 SSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFL 432

Query: 345 ----------------YNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMY 387
                           YN  L  LC  K   +A  ++  M+ E    P V +Y++LI  +
Sbjct: 433 QGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGF 492

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            ++ E   A + + +M    C  +V TY   ++GL    ++ +A  + EE+V  G     
Sbjct: 493 CKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDV 552

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHM 473
             + + +   S+       H+L + M
Sbjct: 553 ITYSTLIHGFSLARKHDQAHELFETM 578



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 17/193 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     N LL  LCK    D A E   K V+    P+  TY  L             ++
Sbjct: 584 RPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVE 643

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+  GH PD   YN  +  F +A    EA  LF+ M ++      P   ++ IMI 
Sbjct: 644 VFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC---KPDTVSHNIMID 700

Query: 281 ALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            L +  R+++   +   M  + GC PD+ TY  ++ G+C   ++ EA K  +E+      
Sbjct: 701 GLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLS 760

Query: 340 PDIVTYNCFLKVL 352
           PD   +N  L+ +
Sbjct: 761 PDPHAFNVLLEAI 773



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 9/213 (4%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D FTYN  +D   + R + +A  +FE M  +G     P   TYA+++ +       +E  
Sbjct: 128 DVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVV---PNGFTYAVLVQSSCYERNSDEAV 184

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
              G M++ G  P  + Y++V E +   GK  E  +       K    +++     L   
Sbjct: 185 RFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNF 244

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM--DKRGCAQ 410
                  EA +L+  M++ GC P    Y+ ++  + +L   D AF+ + EM  + +    
Sbjct: 245 VIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLN 304

Query: 411 DVDTYCVMIDGLFDCSKVE---EACFLLEEVVN 440
           +V  +   + GL    K+E   EAC  ++E ++
Sbjct: 305 NV-AWTAFLSGLCKSGKIEQAFEACRTMQESLS 336


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 154/320 (48%), Gaps = 16/320 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           +++  +P+I A N ++D+LCK   V+ A    K ++ K ++PN  TY  L          
Sbjct: 285 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 344

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + L +MI+    P+  TY+  +D F K   V EA +LFE M         P   TY
Sbjct: 345 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI---DPDIVTY 401

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L  +DR++E   +   M++ GCL DV +Y  ++ G C A +VE+  K   EM  
Sbjct: 402 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 461

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G   + VTYN  ++      + D+A   + +M   G  P + TYN+L+    + GE + 
Sbjct: 462 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 521

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A   + +M KR    D+ TY  +I G+    KVEEA  L   +  KGLK     + + + 
Sbjct: 522 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 581

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
            L   G L  +  L   M++
Sbjct: 582 GLCTKGLLHEVEALYTKMKQ 601



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 16/286 (5%)

Query: 172  KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
            K +P +   N ++D LCK   +D A  + K ++ K ++PN  TY+ L             
Sbjct: 865  KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 924

Query: 219  MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
             + L +MI+    PD FT++  ID F K   + EA  L++ M  +      P+  TY+ +
Sbjct: 925  SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI---DPSIVTYSSL 981

Query: 279  IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            I     +DR++E   +   M++  C PDV TY  +++G C   +VEE  +   EM  +G 
Sbjct: 982  INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 1041

Query: 339  PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
              + VTYN  ++ L    + D A  ++  M+  G  P++ TYN L+    + G+ + A  
Sbjct: 1042 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 1101

Query: 399  TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +  + +      + TY +MI+G+    KVE+   L   +  KG+K
Sbjct: 1102 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 1147



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 134/290 (46%), Gaps = 25/290 (8%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            QP++    ++++ LCK G  D A                 +N+L      +M Q    P 
Sbjct: 832  QPDLVTYGVVVNGLCKRGDTDLA-----------------FNLL-----NKMEQGKLEPG 869

Query: 234  NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
               YNT ID  CK + + +A +LF+ M TKG     P   TY+ +I  L    R  +   
Sbjct: 870  VLIYNTIIDGLCKYKHMDDALNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASR 926

Query: 294  LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
            LL  MI     PDV T+  +++     GK+ EA K  +EM  +   P IVTY+  +   C
Sbjct: 927  LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 986

Query: 354  DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +   DEA +++  M+   C+P V TYN LI  + +    +   E + EM +RG   +  
Sbjct: 987  MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 1046

Query: 414  TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            TY ++I GLF     + A  + +E+V+ G+      +++ L  L   G L
Sbjct: 1047 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 1096



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------ 217
           + E +K +  P I   + LL A+ K    D   ++ ++++N   P N  TY+IL      
Sbjct: 683 FGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCR 742

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ P+  T ++ ++ +C ++ ++EA  L + M   G     P 
Sbjct: 743 RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY---QPN 799

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G  + A+  L 
Sbjct: 800 TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 859

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M      P ++ YN  +  LC  K+ D+AL L+  M   G  P+V TY+ LIS     G
Sbjct: 860 KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 919

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    DV T+  +ID      K+ EA  L +E+V + +
Sbjct: 920 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 971



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 147/325 (45%), Gaps = 16/325 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI------- 216
           +++ +K +  P I   N LL A+ K    D   ++ K+++   ++ +  T+NI       
Sbjct: 176 FSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCC 235

Query: 217 -----LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                L +  L +M+++G+ PD  T  + ++ FC+   V++A  L + M   G     P 
Sbjct: 236 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY---KPD 292

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I +L +  R+ + F     +   G  P+V TY  ++ G+C + +  +A + L 
Sbjct: 293 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 352

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  K   P+++TY+  L     N    EA  L+  M+ +   P + TY+ LI+      
Sbjct: 353 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 412

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D A + +  M  +GC  DV +Y  +I+G     +VE+   L  E+  +GL      ++
Sbjct: 413 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 472

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKF 476
           + +      GD+    +    M  F
Sbjct: 473 TLIQGFFQAGDVDKAQEFFSQMDFF 497



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 126/286 (44%), Gaps = 16/286 (5%)

Query: 152  FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPN 210
            FV    L+   K Y E +K    P I   + L++  C    +D A+ + +  V     P+
Sbjct: 950  FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009

Query: 211  ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
              TYN L            GM+   EM Q G   +  TYN  I    +A     A ++F+
Sbjct: 1010 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 1069

Query: 259  FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
             M + G     P   TY  ++  L +N ++E+   +  ++  S   P + TY  ++EGMC
Sbjct: 1070 EMVSDGV---PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 1126

Query: 319  LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             AGKVE+ +     +  KG  PD+V YN  +   C   + +EA  L+  M E G  P+  
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 1186

Query: 379  TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
             YN LI      G+ + + E   EM   G A D  T  ++ + L D
Sbjct: 1187 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 1232



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 30/355 (8%)

Query: 114  EP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY------ 165
            EP  L YN +ID L   K+      L   M     R N   V    L+  L  Y      
Sbjct: 867  EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN--VVTYSSLISCLCNYGRWSDA 924

Query: 166  ----TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
                ++ I+ K  P++   + L+DA  K G LV+  +   + VK  + P+  TY+ L   
Sbjct: 925  SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING 984

Query: 218  ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                       Q  E M+     PD  TYNT I  FCK + V E  ++F  M  +G   +
Sbjct: 985  FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 1044

Query: 269  SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            + T   Y I+I  L Q    +    +   M++ G  P++ TY  +L+G+C  GK+E+A  
Sbjct: 1045 TVT---YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 1101

Query: 329  FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              E +      P I TYN  ++ +C     ++   L+  +   G  P V  YN +IS + 
Sbjct: 1102 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 1161

Query: 389  ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              G  + A   + EM + G   +   Y  +I         E +  L++E+ + G 
Sbjct: 1162 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 1216



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+I+I    +  ++    ++LG M+  G  P++ T   +L G C + ++ EA   +++M
Sbjct: 732 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 791

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY P+ VT+N  +  L  +    EA+ L  RM+  GC P + TY ++++   + G+ 
Sbjct: 792 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 851

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D AF   ++M++      V  Y  +IDGL     +++A  L +E+  KG++     + S 
Sbjct: 852 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 911

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +  L   G    A   LSD + +  NP
Sbjct: 912 ISCLCNYGRWSDASRLLSDMIERKINP 938



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 3/253 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M  +G   +++TY+  I+ FC+   +  A  +   M   G     P   T + ++   
Sbjct: 719 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY---EPNIVTLSSLLNGY 775

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             + R+ E  +L+  M  +G  P+  T+  ++ G+ L  K  EA   ++ M  KG  PD+
Sbjct: 776 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 835

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   + D A  L  +M +    P V  YN +I    +    D A   + E
Sbjct: 836 VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 895

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   +V TY  +I  L +  +  +A  LL +++ + +      F + +      G 
Sbjct: 896 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 955

Query: 463 LGAIHKLSDHMRK 475
           L    KL D M K
Sbjct: 956 LVEAEKLYDEMVK 968



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 16/189 (8%)

Query: 181  NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
            N+L+  L + G  D A+ I K  V + V PN  TYN L             M   E + +
Sbjct: 1049 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 1108

Query: 228  MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
                P  +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +   
Sbjct: 1109 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV---KPDVVAYNTMISGFCRKGS 1165

Query: 288  MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             EE  +L   M   G LP+   Y  ++      G  E + + ++EM + G+  D  T   
Sbjct: 1166 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 1225

Query: 348  FLKVLCDNK 356
               +L D +
Sbjct: 1226 VTNMLHDGR 1234



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 120/278 (43%), Gaps = 26/278 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN----ILGMQTLEEMIQM 228
           +P+I     ++  LC  GL+   E +  ++K + +  N  T +     L  + +++M+  
Sbjct: 570 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSC 629

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-- 286
           G+AP       ++    K+ +  +A  L           S  T+  Y      L +N   
Sbjct: 630 GYAP-------SLLKDIKSGVCKKALSLLR-------AFSGKTSYDYR---EKLSRNGLS 672

Query: 287 --RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++++  +L G M+ S   P +  + ++L  +    K +      E+M N G P +  T
Sbjct: 673 ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 732

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+  +   C       AL + G+M+++G  P++ T + L++ Y        A     +M 
Sbjct: 733 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 792

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             G   +  T+  +I GLF  +K  EA  L++ +V KG
Sbjct: 793 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 830



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 5/204 (2%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ +   L   M+ S   P +  +  +L  +    K +      ++M   G   D+ T+N
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       AL + G+M+++G  P   T   L++ +        A     +M + 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDL 463
           G   D+  Y  +ID L    +V +A    +E+  KG++   + Y    + L   S   D 
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD- 346

Query: 464 GAIHKLSDHMRKFYNPVIARRLAL 487
            A   LSD ++K   P +    AL
Sbjct: 347 -AARLLSDMIKKKITPNVITYSAL 369


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 26/331 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--------GMQTLEEM 225
           P++    +L+D+ CK GL+  A     + V++   PN  TY  L         M +  E+
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 226 IQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------------STIS 268
            +M    G  P+  TY   ID  CK+  + +A  ++  MR                  I 
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  ++  L +  +++E   LL  M   GC P+   Y  +++G C  GK++EA  
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M  +GY P++ TY+  +  L  +K  D AL++  RM+E  C P+V  Y  +I    
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+ D A+     M+++GC  +V TY  MIDG     KV++   L+ ++  KG    + 
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +   +      G L   H+L D M++ Y P
Sbjct: 813 TYRVLINHCCAAGLLDDAHQLLDEMKQTYWP 843



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-----------------NKVKPNANTYNIL 217
           P +     L+D  CK G ++ A  I  R++                 N   PN  TY  L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           L+ M   G  P++  Y+  ID FCK   + EA  +F  M  +G 
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY 702

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY+ +I  L ++ R++    +L  M+ + C P+V  Y E+++G+C  GK +E
Sbjct: 703 ---GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDE 759

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AY+ +  M  KG  P++VTY   +         D+ L L  +M   GC P+  TY +LI+
Sbjct: 760 AYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLIN 819

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
                G  D A +   EM +    + +  Y  +I+G 
Sbjct: 820 HCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 173/445 (38%), Gaps = 79/445 (17%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDN-MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF 102
           S    +D   + + I +  + + +  +K L      L    VV VL   +  E +  +FF
Sbjct: 91  SGRCSNDAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPE-LGVKFF 149

Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL 162
           +WAG Q  Y H    Y+ ++++L             C   D         VP        
Sbjct: 150 IWAGRQIGYGHTGPVYHALLEVLG------------CGGNDR--------VP-------- 181

Query: 163 KQYTEKIKVKTQPEINAL-NLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQ 220
           +Q+  +I+ + +  +  L N+L+   C+ GL + A     R+K+   KP+  TYN L   
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241

Query: 221 TLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEA--------------- 253
            LE            EM   G   D +T    +   CKA    EA               
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVI 301

Query: 254 ----------ADLFE----FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
                     A LFE    F+    S+   P   TY I++   ++  ++  C  +L  MI
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GC P    +  ++   C +G    AYK L++MG+ G  P  V YN  +  +C N+   
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 360 E------ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                  A + YG M++     +    + L       G+ + A+    EM  +G   D  
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I  L + SKV+ A  L EE+
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEM 506



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 20/284 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A+ +  ++  +   PN  TY+ L             ++
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  M++   AP+   Y   ID  CK     EA  L   M  KG     P   TY  MI 
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGC---HPNVVTYTAMID 784

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++++C  L+  M   GC P+  TY+ ++   C AG +++A++ L+EM    +P 
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPK 844

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            +  Y   ++    N+    +L L   + E    P +  Y +LI  + + G  + A E  
Sbjct: 845 HMAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELH 902

Query: 401 HEMDK--RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             M       A D D Y  +I+ L   SKV++A  L  +++ +G
Sbjct: 903 KXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRG 946



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 38/324 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-----------GMQTL 222
           P     N L+ A C+ G   YA  + K++ +   +P    YNIL            +  L
Sbjct: 367 PSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVL 426

Query: 223 E-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           E       EM+      +    +      C A    +A  +   M +KG     P   TY
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI---PDTSTY 483

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L    +++  F L   M ++  +PDV TY  +++  C  G +++A K+ +EM  
Sbjct: 484 SKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVR 543

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P++VTY   +      +    A  L+  M+  GC P+V TY  LI  + + G+ + 
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DGL    KV+EA  LL+ + 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDL 463
            +G +  +  +D+ +     +G L
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKL 687



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 56/260 (21%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D + ++ ++    D+ L +L +  E       P +     ++D LCK G  D A  +
Sbjct: 711 SLIDRLFKDKRL----DLALKVLSRMLEN---SCAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 200 CKRVKNK-VKPNANTYNIL--GM-------QTLEEMIQMGH---APDNFTYNTAIDTFCK 246
              ++ K   PN  TY  +  G        + LE M QMG    AP+  TY   I+  C 
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 247 ARMVTEAADLFEFMRTK------------------------------GSTISSPTAKTYA 276
           A ++ +A  L + M+                                   ++ P    Y 
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYR 883

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCL----PDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           I+I +  +  R+E    L  H   S C      D   Y  ++E + LA KV++A++   +
Sbjct: 884 ILIDSFCKAGRLELALEL--HKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYAD 941

Query: 333 MGNKGYPPDIVTYNCFLKVL 352
           M  +G  P++  +   +K L
Sbjct: 942 MIKRGGIPELSIFFYLVKGL 961



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 14/212 (6%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-----------TYAIMIVALVQND 286
             +++     R   +A  + + +R  G      T K           T  + +++LV+N 
Sbjct: 83  GASVNKSVSGRCSNDAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNP 142

Query: 287 RME-ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +  + F   G  I  G    V  Y  +LE +   G      +FL E+ ++         
Sbjct: 143 ELGVKFFIWAGRQIGYGHTGPV--YHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLL 200

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  ++  C N   + AL   GR+ ++G  PS  TYN L+ ++ E    D A+    EM  
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            G   D  T    +  L    +  EA  L+E+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEK 292



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 5/217 (2%)

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           +F+R           K   ++I    +N         LG + + G  P   TY  ++   
Sbjct: 183 QFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVF 242

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-S 376
             A +++ AY    EM + G+  D  T  CF+ +LC      EAL L    IE   +   
Sbjct: 243 LEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL----IEKEEFKLD 298

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
              Y  +IS   E    + A +    M    C  +V TY +++ G     ++     +L 
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILS 358

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            ++ +G     R F+S +      GD    +KL   M
Sbjct: 359 MMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM 395


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 195/420 (46%), Gaps = 33/420 (7%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           ++V K+   + +   + +N+ +AL+     ++   V  +L+RF  +   A+  F WA  Q
Sbjct: 164 NEVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQ 223

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK----- 163
             Y H P +YN M+DIL     KAK FRL+  ++D M       V ++ +  +++     
Sbjct: 224 IPYRHSPESYNSMVDILG----KAKNFRLMWELVDEMNHLAGS-VSLETMSKVIRRLARA 278

Query: 164 -QYTEKI-------KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
            ++ E I       K     +  A+N+L+DAL K   V+ A  + + +K  +  N  ++N
Sbjct: 279 GRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFN 338

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           +L              + + E+ + G  PD  +Y   I+  C+ +       +   M  K
Sbjct: 339 VLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHK 398

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   T+ I++ AL +  ++ E   +   M   GC+PD S Y  ++  +  AG++
Sbjct: 399 G---CKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRL 455

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +  + +E+M  +G  PD++TYN  +   C +   + AL L  +M EV C P ++TY+ L
Sbjct: 456 TDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPL 515

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + M+               M K   + +  TY +++ GL +  K+  AC    E+++K +
Sbjct: 516 LKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAM 575



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 16/223 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P++ +    ++A C+       + +  ++++K  KPN  T+ I+             ++
Sbjct: 366 EPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALK 425

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E+M + G  PD+  Y++ I    KA  +T+  ++ E M  +G T   P   TY  +I 
Sbjct: 426 VYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVT---PDVLTYNTLIS 482

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
               + + E   +LL  M    C PD+ TY  +L+  C   +++     L+ M       
Sbjct: 483 CACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSI 542

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +  TY   ++ LC+N     A   +G M+     P   T+ ML
Sbjct: 543 EAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 585



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 40/241 (16%)

Query: 123 DILSSTKY-----KAKQFRLVCSMLDYM-----KRNNKVFVPVDVLLMILKQYTEKIKVK 172
           D++S T +     + K FR V  +L  M     K N   F  +   L   KQ  E +KV 
Sbjct: 368 DVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVY 427

Query: 173 TQ-------PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------- 217
            +       P+ +  + L+  L K G L D  E +    K  V P+  TYN L       
Sbjct: 428 EKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAH 487

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +  L +M ++   PD  TY+  +  FC+ + +     L + M     +I    A
Sbjct: 488 SQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIE---A 544

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TYAI++  L +N ++    S  G M++   +P  ST+K + E +       E    LEE
Sbjct: 545 GTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEEL-------ERKSMLEE 597

Query: 333 M 333
           M
Sbjct: 598 M 598


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 26/331 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--------GMQTLEEM 225
           P++    +L+D+ CK GL+  A     + V++   PN  TY  L         M +  E+
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 226 IQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------------STIS 268
            +M    G  P+  TY   ID  CK+  + +A  ++  MR                  I 
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  ++  L +  +++E   LL  M   GC P+   Y  +++G C  GK++EA  
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M  +GY P++ TY+  +  L  +K  D AL++  RM+E  C P+V  Y  +I    
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+ D A+     M+++GC  +V TY  MIDG     KV++   L+ ++  KG    + 
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +   +      G L   H+L D M++ Y P
Sbjct: 813 TYRVLINHCCAAGLLDDAHQLLDEMKQTYWP 843



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-----------------NKVKPNANTYNIL 217
           P +     L+D  CK G ++ A  I  R++                 N   PN  TY  L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           L+ M   G  P++  Y+  ID FCK   + EA  +F  M  +G 
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY 702

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY+ +I  L ++ R++    +L  M+ + C P+V  Y E+++G+C  GK +E
Sbjct: 703 ---GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDE 759

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AY+ +  M  KG  P++VTY   +         D+ L L  +M   GC P+  TY +LI+
Sbjct: 760 AYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLIN 819

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
                G  D A +   EM +    + +  Y  +I+G 
Sbjct: 820 HCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 126/284 (44%), Gaps = 20/284 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A+ +  ++  +   PN  TY+ L             ++
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  M++   AP+   Y   ID  CK     EA  L   M  KG     P   TY  MI 
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGC---HPNVVTYTAMID 784

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++++C  L+  M   GC P+  TY+ ++   C AG +++A++ L+EM    +P 
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPK 844

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            +  Y   ++    N+    +L L   + E    P +  Y +LI  + + G  + A E  
Sbjct: 845 HMAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELH 902

Query: 401 HEMDK--RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            EM       A D D Y  +I+ L   SKV++A  L  +++ +G
Sbjct: 903 KEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRG 946



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 174/445 (39%), Gaps = 79/445 (17%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDN-MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF 102
           S    +D   + + I +  + + +  +K L      L    VV VL   +  E +  +FF
Sbjct: 91  SGRCSNDAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPE-LGVKFF 149

Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL 162
           +WAG Q  Y H    Y+ ++++L                      N++V  P        
Sbjct: 150 IWAGRQIGYGHTGPVYHALLEVLGCGG------------------NDRV--P-------- 181

Query: 163 KQYTEKIKVKTQPEINAL-NLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQ 220
           +Q+  +I+ + +  +  L N+L+   C+ GL + A     R+K+   KP+  TYN L   
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241

Query: 221 TLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEA--------------- 253
            LE            EM   G   D +T    +   CKA    EA               
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVI 301

Query: 254 ----------ADLFE----FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
                     A LFE    F+    S+   P   TY I++   ++  ++  C  +L  MI
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GC P    +  ++   C +G    AYK L++MG+ G  P  V YN  +  +C N+   
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 360 E------ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                  A + YG M++     +    + L       G+ + A+    EM  +G   D  
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I  L + SKV+ A  L EE+
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEM 506



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 38/324 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-----------GMQTL 222
           P     N L+ A C+ G   YA  + K++ +   +P    YNIL            +  L
Sbjct: 367 PSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVL 426

Query: 223 E-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           E       EM+      +    +      C A    +A  +   M +KG     P   TY
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI---PDTSTY 483

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L    +++  F L   M ++  +PDV TY  +++  C  G +++A K+ +EM  
Sbjct: 484 SKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVR 543

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P++VTY   +      +    A  L+  M+  GC P+V TY  LI  + + G+ + 
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DGL    KV+EA  LL+ + 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDL 463
            +G +  +  +D+ +     +G L
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKL 687



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 52/270 (19%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D + ++ ++    D+ L +L +  E       P +     ++D LCK G  D A  +
Sbjct: 711 SLIDRLFKDKRL----DLALKVLSRMLEN---SCAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 200 CKRVKNK-VKPNANTYNIL--GM-------QTLEEMIQMGH---APDNFTYNTAIDTFCK 246
              ++ K   PN  TY  +  G        + LE M QMG    AP+  TY   I+  C 
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 247 ARMVTEAADLFEFMRTK------------------------------GSTISSPTAKTYA 276
           A ++ +A  L + M+                                   ++ P    Y 
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYR 883

Query: 277 IMIVALVQNDRMEECFSLLGHM--INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           I+I +  +  R+E    L   M    S    D   Y  ++E + LA KV++A++   +M 
Sbjct: 884 ILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMI 943

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
            +G  P++  +   +K L      +EAL+L
Sbjct: 944 KRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 14/212 (6%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-----------TYAIMIVALVQND 286
             +++     R   +A  + + +R  G      T K           T  + +++LV+N 
Sbjct: 83  GASVNKSVSGRCSNDAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNP 142

Query: 287 RME-ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +  + F   G  I  G    V  Y  +LE +   G      +FL E+ ++         
Sbjct: 143 ELGVKFFIWAGRQIGYGHTGPV--YHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLL 200

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  ++  C N   + AL   GR+ ++G  PS  TYN L+ ++ E    D A+    EM  
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            G   D  T    +  L    +  EA  L+E+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEK 292



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 3/216 (1%)

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           +F+R           K   ++I    +N         LG + + G  P   TY  ++   
Sbjct: 183 QFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVF 242

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
             A +++ AY    EM + G+  D  T  CF+ +LC      EAL L  +  E     +V
Sbjct: 243 LEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEK--EEFKLDTV 300

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             Y  +IS   E    + A +    M    C  +V TY +++ G     ++     +L  
Sbjct: 301 -IYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           ++ +G     R F+S +      GD    +KL   M
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM 395


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 139/278 (50%), Gaps = 17/278 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P++ + ++L+D  CK   +  AE + K++ +    PN  TYN                  
Sbjct: 155 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 214

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEMI  G +PD  TY+T I  F  AR   +A +LFE M ++G     P A TY  ++  
Sbjct: 215 YEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGC---RPNAVTYNCLLHG 271

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  + +E   L   M+  GC PD  TY  +L G C  GK+E+A +  +EM +KG+ PD
Sbjct: 272 LCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 331

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V YNC LK         EA +L+  M+   C P   ++N++I    +    D A E + 
Sbjct: 332 VVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFE 391

Query: 402 EMDK-RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            M++  GC+ D+ TY  +I GL    ++ EA  + +E+
Sbjct: 392 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 429



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 143/275 (52%), Gaps = 17/275 (6%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------GMQTLEEMIQ------ 227
           ++  LCK G VD A ++ +  +K    P+  T+++L         +Q  +E +Q      
Sbjct: 55  VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTI 114

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
              A   F+YN+ +++ CKA+ V +A  +F  M ++ S +  P   +Y+I+I    + D 
Sbjct: 115 STRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVV--PDVVSYSILIDGFCKIDE 172

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +     L   MI+  C+P+V+TY   L G+   G++ +A    EEM + G  PD++TY+ 
Sbjct: 173 LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +      +  D+A  L+  MI  GC P+  TYN L+    +  +PD A E + +M +RG
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           C  D  TY  ++ G  +  K+E+A  + +E+V+KG
Sbjct: 293 CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 327



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 17/272 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL--GMQTLEE----------MI 226
           N LL++LCK   V  A  I   +  +  V P+  +Y+IL  G   ++E          MI
Sbjct: 125 NSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMI 184

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
            +   P+  TYN  ++   +   + +A  ++E M + G    SP   TY+ +I       
Sbjct: 185 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGC---SPDVITYSTLIHGFSLAR 241

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           + ++   L   MI+ GC P+  TY  +L G+C   K +EA++   +M  +G  PD VTY 
Sbjct: 242 KHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYT 301

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C+    ++A+ ++  M+  G  P V  YN L+  +F  G+P  A + +  M  R
Sbjct: 302 TLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSR 361

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            C  D  ++ +MIDGL    ++++A  + E +
Sbjct: 362 ECKPDTVSHNIMIDGLSKAKRLDDAVEVFERM 393



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 156/331 (47%), Gaps = 21/331 (6%)

Query: 169 IKVKTQPEIN--ALNLLLDALCKCGLVDYAETICKRVKNKVKPN-----ANTYNIL---- 217
           + V+++  +N  A    L  LCK G ++ A   C+ ++  +  +        ++++    
Sbjct: 1   MAVESKAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELC 60

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   +  LE MI+ G+ PD  T++  I+  CKA  + EA +  + M    ST +S 
Sbjct: 61  KAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRAS- 119

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           +  +Y  ++ +L +  ++ + F++   M++    +PDV +Y  +++G C   ++  A K 
Sbjct: 120 SCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKL 179

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++M +    P++ TYN FL  L       +A  +Y  MI  GC P V TY+ LI  +  
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSL 239

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
             + D A E +  M  RGC  +  TY  ++ GL   SK +EA  L  ++V +G       
Sbjct: 240 ARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVT 299

Query: 450 FDSYLMQLSVIGDL-GAIHKLSDHMRKFYNP 479
           + + L     +G +  A+    + + K ++P
Sbjct: 300 YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDP 330



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 17/241 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           Y E I     P++   + L+         D A  + +  +    +PNA TYN L      
Sbjct: 215 YEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCK 274

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +   +M++ G  PD  TY T +  FC    + +A ++F+ M +KG     P 
Sbjct: 275 ESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH---DPD 331

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  ++    +  +  E   L   M++  C PD  ++  +++G+  A ++++A +  E
Sbjct: 332 VVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFE 391

Query: 332 EM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            M  + G  PD+VTYN  +  LC  +   EA++++  +  +   P    +N+L+   +  
Sbjct: 392 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAA 451

Query: 391 G 391
           G
Sbjct: 452 G 452


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 19/287 (6%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG------------MQTLEEMIQ 227
            N LLDAL K      A ++ + ++ +  P+  TYN L             +  L +M +
Sbjct: 173 FNSLLDALGKSRHASKAASLVRALERRFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAE 232

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--PTAKTYAIMIVALVQN 285
            G AP   TYN  +  F +A  +  A + F  M+ +GS   +  P   +Y  +I  L   
Sbjct: 233 SGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVA 292

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            ++++   L   M   GC P ++TY  +++ +C  G VE+A    ++M  K Y P++VTY
Sbjct: 293 GQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTY 352

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              ++ LC     D A++L  RM   GC P VQTYN+LI   FE GE D A   +  M K
Sbjct: 353 TVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSK 412

Query: 406 -RGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKLPYR 448
              C  + DTY ++I  +F   + E+   A  ++ E+V +G  LP R
Sbjct: 413 GEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEMVERGY-LPRR 458



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 9/217 (4%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           A D   +N+ +D   K+R  ++AA L   +  +      P   TY  +     +      
Sbjct: 167 AQDLPLFNSLLDALGKSRHASKAASLVRALERR----FPPDVVTYNTLADGWCRVKDTSR 222

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-----PDIVTY 345
              LL  M  SG  P  +TY  +L+G   AG+++ A+ F  +M  +G       PD+V+Y
Sbjct: 223 ALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSY 282

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  L      D+A +L+  M + GC P++ TYN LI +  + G  + A   + +M +
Sbjct: 283 TTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIR 342

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +    +V TY V+I GL    K++ A  L+E + N+G
Sbjct: 343 KDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEG 379



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 38/171 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHAPD 233
           P +    +L+  LC  G +D A  + +R+KN+  +P   TYN+L   + EE    G    
Sbjct: 347 PNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEE----GE--- 399

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE--- 290
                           + +A  LFE M +KG     P   TY I+I A+    R E+   
Sbjct: 400 ----------------MDKALHLFERM-SKGEE-CLPNQDTYNIVISAMFVRKRAEDMAI 441

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAG---------KVEEAYKFLEE 332
              ++  M+  G LP       VL G+ L G         +++E Y+ L  
Sbjct: 442 AARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQLSRDLLRMQEKYRRLRR 492


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 26/331 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--------GMQTLEEM 225
           P++    +L+D+ CK GL+  A     + V++   PN  TY  L         M +  E+
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 226 IQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------------STIS 268
            +M    G  P+  TY   ID  CK+  + +A  ++  MR                  I 
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  ++  L +  +++E   LL  M   GC P+   Y  +++G C  GK++EA  
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M  +GY P++ TY+  +  L  +K  D AL++  RM+E  C P+V  Y  +I    
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+ D A+     M+++GC  +V TY  MIDG     KV++   L+ ++  KG    + 
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +   +      G L   H+L D M++ Y P
Sbjct: 813 TYRVLINHCCAAGLLDDAHQLLDEMKQTYWP 843



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-----------------NKVKPNANTYNIL 217
           P +     L+D  CK G ++ A  I  R++                 N   PN  TY  L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           L+ M   G  P++  Y+  ID FCK   + EA  +F  M  +G 
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY 702

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY+ +I  L ++ R++    +L  M+ + C P+V  Y E+++G+C  GK +E
Sbjct: 703 ---GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDE 759

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AY+ +  M  KG  P++VTY   +         D+ L L  +M   GC P+  TY +LI+
Sbjct: 760 AYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLIN 819

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
                G  D A +   EM +    + +  Y  +I+G 
Sbjct: 820 HCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 173/445 (38%), Gaps = 79/445 (17%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDN-MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF 102
           S    +D   + + I +  + + +  +K L      L    VV VL   +  E +  +FF
Sbjct: 91  SGRCSNDAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPE-LGVKFF 149

Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL 162
           +WAG Q  Y H    Y+ ++++L             C   D         VP        
Sbjct: 150 IWAGRQIGYGHTGPVYHALLEVLG------------CGGNDR--------VP-------- 181

Query: 163 KQYTEKIKVKTQPEINAL-NLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQ 220
           +Q+  +I+ + +  +  L N+L+   C+ GL + A     R+K+   KP+  TYN L   
Sbjct: 182 EQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRV 241

Query: 221 TLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEA--------------- 253
            LE            EM   G   D +T    +   CKA    EA               
Sbjct: 242 FLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVI 301

Query: 254 ----------ADLFE----FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
                     A LFE    F+    S+   P   TY I++   ++  ++  C  +L  MI
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GC P    +  ++   C +G    AYK L++MG+ G  P  V YN  +  +C N+   
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 360 E------ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                  A + YG M++     +    + L       G+ + A+    EM  +G   D  
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I  L + SKV+ A  L EE+
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEM 506



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 121/306 (39%), Gaps = 51/306 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A+ +  ++  +   PN  TY+ L             ++
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  M++   AP+   Y   ID  CK     EA  L   M  KG     P   TY  MI 
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGC---HPNVVTYTAMID 784

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP- 339
              +  ++++C  L+  M   GC P+  TY+ ++   C AG +++A++ L+EM    +P 
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPK 844

Query: 340 --------------------------------PDIVTYNCFLKVLCDNKNGDEALRLYGR 367
                                           P I  Y   +   C     + AL L+  
Sbjct: 845 HMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKE 904

Query: 368 MIEVGCWPSVQT--YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           M     + +     Y+ LI       + D AFE + +M KRG   ++  +  ++ GL   
Sbjct: 905 MSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRI 964

Query: 426 SKVEEA 431
           ++ EEA
Sbjct: 965 NRWEEA 970



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 38/324 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-----------GMQTL 222
           P     N L+ A C+ G   YA  + K++ +   +P    YNIL            +  L
Sbjct: 367 PSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVL 426

Query: 223 E-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           E       EM+      +    +      C A    +A  +   M +KG     P   TY
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI---PDTSTY 483

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L    +++  F L   M ++  +PDV TY  +++  C  G +++A K+ +EM  
Sbjct: 484 SKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVR 543

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P++VTY   +      +    A  L+  M+  GC P+V TY  LI  + + G+ + 
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DGL    KV+EA  LL+ + 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDL 463
            +G +  +  +D+ +     +G L
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKL 687



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 52/270 (19%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D + ++ ++    D+ L +L +  E       P +     ++D LCK G  D A  +
Sbjct: 711 SLIDRLFKDKRL----DLALKVLSRMLEN---SCAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 200 CKRVKNK-VKPNANTYNIL--GM-------QTLEEMIQMGH---APDNFTYNTAIDTFCK 246
              ++ K   PN  TY  +  G        + LE M QMG    AP+  TY   I+  C 
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 247 ARMVTEAADLFEFMRTK------------------------------GSTISSPTAKTYA 276
           A ++ +A  L + M+                                   ++ P    Y 
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYR 883

Query: 277 IMIVALVQNDRMEECFSLLGHM--INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           I+I +  +  R+E    L   M    S    D   Y  ++E + LA KV++A++   +M 
Sbjct: 884 ILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMI 943

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
            +G  P++  +   +K L      +EAL+L
Sbjct: 944 KRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 14/212 (6%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-----------TYAIMIVALVQND 286
             +++     R   +A  + + +R  G      T K           T  + +++LV+N 
Sbjct: 83  GASVNKSVSGRCSNDAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNP 142

Query: 287 RME-ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +  + F   G  I  G    V  Y  +LE +   G      +FL E+ ++         
Sbjct: 143 ELGVKFFIWAGRQIGYGHTGPV--YHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLL 200

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  ++  C N   + AL   GR+ ++G  PS  TYN L+ ++ E    D A+    EM  
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            G   D  T    +  L    +  EA  L+E+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEK 292



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 5/217 (2%)

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           +F+R           K   ++I    +N         LG + + G  P   TY  ++   
Sbjct: 183 QFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVF 242

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-S 376
             A +++ AY    EM + G+  D  T  CF+ +LC      EAL L    IE   +   
Sbjct: 243 LEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL----IEKEEFKLD 298

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
              Y  +IS   E    + A +    M    C  +V TY +++ G     ++     +L 
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILS 358

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            ++ +G     R F+S +      GD    +KL   M
Sbjct: 359 MMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM 395


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 139/271 (51%), Gaps = 26/271 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            P +   N ++D LCKCG ++ A T+              Y+ +        I  G  P 
Sbjct: 62  HPTVVTYNTMIDGLCKCGRIENALTL--------------YDDMA-------IHFGFRPT 100

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TY+T ID  C+   V +   L E M  +G    +P A TY  ++ AL+   R +E FS
Sbjct: 101 VVTYSTLIDGLCRDHEVDKGCKLLEEMAGRG---CAPNAVTYNTLVNALLGQGRSKEAFS 157

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG--NKGYPPDIVTYNCFLKV 351
           LL  M  +GC P++ T+  +++G+C  G++E A++ ++EM     G  PD++T+N  L  
Sbjct: 158 LLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDG 217

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC  +   +A  ++ R +E GC P+V TY+ LI    ++ + D A +   +M + GC  +
Sbjct: 218 LCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRAN 277

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             TY  ++DGL    ++E+A  +L ++ + G
Sbjct: 278 TVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG 308



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 17/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   + L+D L K   +D A + + K V+   + N  TY+ +             + 
Sbjct: 240 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVV 299

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M   G  PD  TYNT ID F K + + EA  L   M   G     P+  TY  +  
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF---HPSVVTYTTLCH 356

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG-NKGYP 339
            L ++ R +E   +L +M   GC P+  TY  +++G+C AG+V EA  + E+M  ++   
Sbjct: 357 GLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVA 416

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P ++ Y+  +  LC     DEA     RMI  G  P V T+++LI+   + G  D   E 
Sbjct: 417 PHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLEL 476

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  M +RGC  D+ TY  ++D L   S+V+EA  L +++ + GL
Sbjct: 477 FRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGL 520



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 17/263 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           ++D L K G ++ A  + +++++    P+A TYN L             +  L EM++ G
Sbjct: 284 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG 343

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P   TY T     C++    EA ++ ++M  +G    +P A TY+ ++  L +  R+ 
Sbjct: 344 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGC---APNAITYSSIVDGLCKAGRVT 400

Query: 290 ECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E       M     + P V  Y  +++G+C AGK++EAY+FLE M   G  PD+VT++  
Sbjct: 401 EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSIL 460

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LCD    D  L L+  M E GC P + TY  L+         D AF+ + +M   G 
Sbjct: 461 INGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGL 520

Query: 409 AQDVDTYCVMIDGLFDCSKVEEA 431
           + D  T   MI GL + ++ E+A
Sbjct: 521 SPDRSTRRTMIHGLLEVNRDEDA 543



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 27/275 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM--IQMGHAP 232
           PE+    L++  LCK G ++ A                       + ++EM  I+ G +P
Sbjct: 169 PELITFGLIIKGLCKEGEIEAA----------------------FRVVDEMFMIESGLSP 206

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  T+N+ +D  CK + + +A ++F+    +G     P   TY+ +I  L +  +M+E  
Sbjct: 207 DVITFNSVLDGLCKEQRILDAHNVFKRALERGC---RPNVVTYSTLIDGLSKMAKMDEAL 263

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            LL  M+  GC  +  TY  V++G+   G++E+A   L +M + G  PD VTYN  +   
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 323

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
              +   EA+ L   M+E G  PSV TY  L       G  D A E    M  RGCA + 
Sbjct: 324 FKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNA 383

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            TY  ++DGL    +V EA    E++    +  P+
Sbjct: 384 ITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 418



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 127/300 (42%), Gaps = 63/300 (21%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           ++D LCK   VD A T+ K                      +M+     PD  TY   ID
Sbjct: 1   MIDGLCKSRKVDKAITLFK----------------------QMVDKAIYPDVVTYGALID 38

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM-INS 301
              K R V EA DLFE  R KG     PT  TY  MI  L +  R+E   +L   M I+ 
Sbjct: 39  GLGKQRRVKEAYDLFEEARAKGC---HPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHF 95

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G  P V TY  +++G+C   +V++  K LEEM  +G  P+ VTYN  +  L       EA
Sbjct: 96  GFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEA 155

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD----------------- 404
             L  +M   GC P + T+ ++I    + GE + AF    EM                  
Sbjct: 156 FSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 405 --------------------KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
                               +RGC  +V TY  +IDGL   +K++EA  LL ++V  G +
Sbjct: 216 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR 275



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 1/197 (0%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           MI  L ++ ++++  +L   M++    PDV TY  +++G+    +V+EAY   EE   KG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELGEPDGA 396
             P +VTYN  +  LC     + AL LY  M I  G  P+V TY+ LI       E D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            +   EM  RGCA +  TY  +++ L    + +EA  LLE++   G       F   +  
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 457 LSVIGDLGAIHKLSDHM 473
           L   G++ A  ++ D M
Sbjct: 181 LCKEGEIEAAFRVVDEM 197


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 191/439 (43%), Gaps = 44/439 (10%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL---GVPLTTDSVVGVLQRFQFEEKIAF 99
           E S +  ++A+L   ++ + N +   E  L  L   GV LT D +V +L R +   K+A 
Sbjct: 28  EPSPAADELARL---LLAHHNPFHPAESPLQLLSGGGVSLTGDLLVQLLLRLRGASKLAL 84

Query: 100 RFFMWAGHQDNYAHEPLA---YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
                A      A    A   Y+ ++D L   +     +RLV           + F  + 
Sbjct: 85  SLLHAARLHPPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLA 144

Query: 157 VLLMILKQYTEKIK--------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK 208
              +      + ++        V  +P+      LLD LCK      A  +  + K K +
Sbjct: 145 RRYVAAGMTRQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYE 204

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA--------- 247
           PN   Y +L              + L++MI  G  P+  TYN  ++  C+          
Sbjct: 205 PNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRF 264

Query: 248 -RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
            R V  A DL + M  +G     P   +Y++++    +  + E C  +   M   G  P 
Sbjct: 265 DRTVRAAEDLLKEMHQRGI---EPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPT 321

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V+TY  V++ +   G++++A   L+EM ++G  P   TYNCF K     K+ + AL+LY 
Sbjct: 322 VATYTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYN 381

Query: 367 RMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +M   G    P + TYN+L+ M+ +L + D   + W++M +     D+++Y +++ GL D
Sbjct: 382 KMKAPGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCD 441

Query: 425 CSKVEEACFLLEEVVNKGL 443
             K  EAC    E++ +G 
Sbjct: 442 NKKWREACQFFMEMIERGF 460



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     ++  L  CG +D AE++                      L+EM   G  P  
Sbjct: 320 PTVATYTSVIKCLASCGRLDDAESL----------------------LDEMASEGVCPSP 357

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN     +   + V  A  L+  M+  GS  ++P   TY I++   ++ ++ +    +
Sbjct: 358 ATYNCFFKEYRGRKDVNGALQLYNKMKAPGSP-ATPDIHTYNILLGMFIKLNQHDTVMQV 416

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
              M  S   PD+++Y  ++ G+C   K  EA +F  EM  +G+ P  +T+    + L
Sbjct: 417 WNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFLPQKITFETLYRGL 474


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 153/330 (46%), Gaps = 34/330 (10%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           I+   +P + A N L+  LC  G ++ A  +C ++ ++   PN  TY+IL          
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL 400

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +T   MI  G  P+  TY   +D  CK  M  +A  L E M  +G T   P   T+
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT---PNTMTF 457

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
              I  L  N R+E    LL  M   GCLP+++TY E+L+ +    K EEA+   +E+  
Sbjct: 458 NTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA 517

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG---- 391
           +   P++VTYN  L          EAL+L+G+ +  G  P   TYN +I  Y + G    
Sbjct: 518 RNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKI 577

Query: 392 -----EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                E   + + WH         D+ TY  +I G  +   +EEA   L++ +N+G+   
Sbjct: 578 AAQLVERVSSMKEWHP--------DIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPN 629

Query: 447 YRKFDSYLMQ-LSVIGDLGAIHKLSDHMRK 475
           +  +++ +      +G +G IH L D +RK
Sbjct: 630 FATWNALVRCFFDSLGHMGPIHILDDILRK 659



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 164/348 (47%), Gaps = 20/348 (5%)

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195
           R+   +LD +   NK         MI   YT   K    P +   N+LL ALCK   VD 
Sbjct: 145 RIYNHLLDALLSENK-------FQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDA 197

Query: 196 AETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHA--------PDNFTYNTAIDTFCK 246
           A  +   + NK   P+A TY  + + +L +  ++  A        P    YN  ID  CK
Sbjct: 198 AHKLFVEMSNKGCPPDAVTYTTM-VSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCK 256

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              +  A  L   M   G     P   +Y+ +I +L  +  +E  F+L   M   GC  +
Sbjct: 257 EGRIEVAIKLLGEMMDNGV---DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDAN 313

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           + T+  +++G  + GK+ EA    + M   G  P++V YN  +  LC N + +EAL++  
Sbjct: 314 IHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCD 373

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           +M   GC P+V TY++LI  + + G+  GA ETW+ M   GC  +V TY  M+D L   S
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNS 433

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             ++A  L+E++  +G       F++++  L   G +    KL + M+
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQ 481



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 140/311 (45%), Gaps = 16/311 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNI------------LG 218
           + +P +   N L+D +CK G ++ A + + + + N V PN  +Y+             L 
Sbjct: 239 RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA 298

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                +M   G   +  T+   I        + EA DL++ M   G     P    Y  +
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC---EPNVVAYNTL 355

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L  N  +EE   +   M  SGCLP+V+TY  +++G   +G +  A +    M + G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P++VTY C + VLC N   D+A  L  +M   GC P+  T+N  I      G  + A +
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
               M   GC  ++ TY  ++D LF  +K EEA  L +E+  + L+     +++ L   S
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 459 VIGDLGAIHKL 469
             G +G   +L
Sbjct: 536 RAGMMGEALQL 546



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 23/316 (7%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++D M +  ++ V + +L        E +     P + + + ++++LC  G V+ A  +
Sbjct: 249 ALIDGMCKEGRIEVAIKLL-------GEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 200 -CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             +        N +T+  L             +   + MIQ G  P+   YNT I   C 
Sbjct: 302 FAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCS 361

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              + EA  + + M+  G     P   TY+I+I    ++  +         MI+ GC P+
Sbjct: 362 NGSLEEALQVCDQMQRSGCL---PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPN 418

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V TY  +++ +C     ++A   +E+M  +G  P+ +T+N F+K LC N   + A++L  
Sbjct: 419 VVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLE 478

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           RM   GC P++ TYN L+   F + + + AF  + E++ R    ++ TY  ++ G     
Sbjct: 479 RMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAG 538

Query: 427 KVEEACFLLEEVVNKG 442
            + EA  L  + + +G
Sbjct: 539 MMGEALQLFGKALVRG 554



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 8/249 (3%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G  P    YN  +D             L+  M+  G     P   TY I++ AL +ND
Sbjct: 137 EFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI---PNVFTYNILLKALCKND 193

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R++    L   M N GC PD  TY  ++  +C AGK+++A     E+  + + P +  YN
Sbjct: 194 RVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELAGR-FKPSVPVYN 248

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  +C     + A++L G M++ G  P+V +Y+ +I+     G  + AF  + +M  R
Sbjct: 249 ALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR 308

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  ++ T+  +I G F   K+ EA  L + ++  G +     +++ +  L   G L   
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 467 HKLSDHMRK 475
            ++ D M++
Sbjct: 369 LQVCDQMQR 377



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 4/175 (2%)

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEG 316
           F     S     TA TY +MI  L +   M+    +L  M   G  C  D+  +  ++ G
Sbjct: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL--FICIING 118

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
               G  E+A K    +G  G  P +  YN  L  L           LY  M + G  P+
Sbjct: 119 YKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPN 178

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           V TYN+L+    +    D A + + EM  +GC  D  TY  M+  L    K+++A
Sbjct: 179 VFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA 233


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 199/426 (46%), Gaps = 40/426 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAG-HQDNYAHEPLAYNLMIDILS 126
           + +AL    +  T + V   L+R       A  FF     H  +Y H P +++  +DI +
Sbjct: 53  LSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAA 112

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIK----VKT--------- 173
             +     + LV  M     R+ ++      L ++ ++Y    K    V+T         
Sbjct: 113 RMRDFNSAWALVGRM-----RSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGL 167

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG------------MQT 221
             ++++ N LLD LCK   V+ A  + + +K++ +P+  +YNIL             ++ 
Sbjct: 168 HQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRV 227

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM+Q G  P   TYNT +  + ++  + EA + +  M+ +   I      +Y  +I  
Sbjct: 228 LKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEID---VVSYTTVIHG 284

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PP 340
             +   +++   +   M+  G  P+V+TY  +++  C    V+ A    EEM  +G   P
Sbjct: 285 FGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSP 344

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VT+N  ++ LC   + + AL    RM E G   SVQTYN++I  + + GE +   E +
Sbjct: 345 NVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVF 404

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKLPYR-KFDSYLMQ 456
            +M    C  ++DTY V+I  +F   K E+   A  LL E+V +G  LP +  F+  L  
Sbjct: 405 GKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGF-LPRKFTFNRVLNG 463

Query: 457 LSVIGD 462
           L + G+
Sbjct: 464 LVITGN 469



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 6/204 (2%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           ++  ++  L +++R+E    LL   + S   PD  +Y  +  G CL  +   A + L+EM
Sbjct: 173 SFNTLLDILCKSNRVETAHDLL-RTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEM 231

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P +VTYN  LK    +    EA   Y  M +  C   V +Y  +I  + E GE 
Sbjct: 232 VQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEV 291

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDS 452
             A   + EM K G A +V TY  +I        V+ A  + EE+V +G+  P    F+ 
Sbjct: 292 KKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNV 351

Query: 453 YLMQLSVIGD----LGAIHKLSDH 472
            +  L  +GD    LG + ++ +H
Sbjct: 352 VIRGLCHVGDMERALGFMERMGEH 375



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 23/223 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------ 217
           Y E  K K + ++ +   ++    + G V  A+ +  + VK  V PN  TYN L      
Sbjct: 263 YLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCK 322

Query: 218 ------GMQTLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                  +   EEM++ G  +P+  T+N  I   C    V +      FM   G      
Sbjct: 323 KDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCH---VGDMERALGFMERMGEHGLRA 379

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE---AY 327
           + +TY ++I        +E+   + G M +  CLP++ TY  ++  M +  K E+   A 
Sbjct: 380 SVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAG 439

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA---LRLYGR 367
           K L EM  +G+ P   T+N  L  L    N D A   LR+  R
Sbjct: 440 KLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSR 482



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 3/211 (1%)

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
           S   SP++  +A+ I A +++      ++L+G M +    P   T   + E     GK  
Sbjct: 96  SYTHSPSSFDHAVDIAARMRD--FNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPH 153

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A +    M   G   D+ ++N  L +LC +   + A  L  R ++    P   +YN+L 
Sbjct: 154 RAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLL-RTLKSRFRPDTVSYNILA 212

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + Y        A     EM +RG    + TY  M+ G F  ++++EA     E+  +  +
Sbjct: 213 NGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCE 272

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +    + + +      G++    ++ D M K
Sbjct: 273 IDVVSYTTVIHGFGEAGEVKKAKRVFDEMVK 303


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 192/438 (43%), Gaps = 44/438 (10%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E ALD  G+   T  +  V   F    K+    F+WA  Q  +      +N +I+ L  
Sbjct: 76  LETALDQTGIKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINALG- 134

Query: 128 TKYKAKQF-RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE----KIKVKTQPEINALN- 181
              K K+F    C +LD         V  D   +++++YT     +  ++T     +L+ 
Sbjct: 135 ---KMKEFDSAWCLVLDRTG-----LVSSDTFAILIRRYTRAGMPQSAIRTFEYAISLDF 186

Query: 182 -----------LLLDALCKCGLVDYAETIC---KRVKNKVKPNANTYNIL---------- 217
                      +LLD+LCK G V  A+      K++ +   P+   YNI+          
Sbjct: 187 ICDYNCDALLEILLDSLCKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKL 246

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +   EM +   +P   TY T ++ +C+ R V  A +L + MR +G     P A  Y
Sbjct: 247 KHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGI---EPNALVY 303

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I AL +  R +E   ++ + + S   P +STY  +++G C A     A K L+ M +
Sbjct: 304 NPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMMIS 363

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G+ P   TYN F +        +E + LY +MIE G  P   T+++L+ M  E    D 
Sbjct: 364 RGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDL 423

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A +   EM  RGC  D+ T  ++I       + EEA    E+++ KG+   Y  F     
Sbjct: 424 AVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRLND 483

Query: 456 QLSVIGDLGAIHKLSDHM 473
           +L   G +    KLSD M
Sbjct: 484 ELRKRGMVERARKLSDMM 501


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 209/467 (44%), Gaps = 44/467 (9%)

Query: 2   TLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDN 61
           T  H V P+ A       +   K++ S           +  E+SDS  D  K+ E +  +
Sbjct: 69  TNGHFVIPSHANCDKYPNIESHKNIASL---------SLLSEASDS--DAHKVGEILKKH 117

Query: 62  SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121
             + D + +AL+  G+  T D V  +L+RF  +  IA   F+WA +Q  Y H+P  YN M
Sbjct: 118 YLSEDAVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIWAKNQTGYVHKPEIYNSM 177

Query: 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK------QYTEKI------ 169
           IDIL     K+++F L+  ++  M   N  +V +  +  ++K      +Y E I      
Sbjct: 178 IDILG----KSRKFSLMWDLVQEMSGLNG-YVSLVTMGKVMKRLVRDGKYNEAIDAFRGL 232

Query: 170 -KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----------- 217
            K        A+N+L+D L + G V+ A  +    +  +  +  +YNIL           
Sbjct: 233 EKFGLSKSTEAMNVLMDILARNGRVEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFG 292

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              +T+EEM + G  P+  +Y   I+ + + +       +   M+ KG     P   TY 
Sbjct: 293 DARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKGCP---PDLITYT 349

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           + I AL +  ++ +   +   +  +G +     Y  ++  +CL+G++++A+   E++  +
Sbjct: 350 VYIRALGKARQINKALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQ 409

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G   D+  Y   +   C     + AL+L  +M E  C P VQTY  L+ M          
Sbjct: 410 GVGRDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKML 469

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               + M +   + D+ TY +++ GL    K++ ACF  +E V KG+
Sbjct: 470 KFLLNHMFENDVSIDIVTYDLLVHGLRKQGKLKYACFFFQEAVLKGM 516



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 108/281 (38%), Gaps = 12/281 (4%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+      YN+ ID   K+R  +   DL + M      +S     T   ++  LV++ 
Sbjct: 164 QTGYVHKPEIYNSMIDILGKSRKFSLMWDLVQEMSGLNGYVS---LVTMGKVMKRLVRDG 220

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +  E       +   G          +++ +   G+VE+A     E        D  +YN
Sbjct: 221 KYNEAIDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVALEF-EGCLTLDYRSYN 279

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                 C  +   +A +    M E G  P+V +Y   I  Y E  +        +EM ++
Sbjct: 280 ILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEK 339

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  D+ TY V I  L    ++ +A  + EE+   G  L  + + S +  L + G L   
Sbjct: 340 GCPPDLITYTVYIRALGKARQINKALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDA 399

Query: 467 HKLSDHMRK--------FYNPVIARRLALNQKRVRISLREK 499
             + + + K         Y  +I+   AL+Q    + L  K
Sbjct: 400 WNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALKLLHK 440


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 180/392 (45%), Gaps = 46/392 (11%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           + EKAL+ L + +    V  VL +   E  +  +FF WAG + N+ H+   Y  +I  L 
Sbjct: 48  DAEKALEVLKLKVDHRLVREVL-KIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLD 106

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
                 + ++++  M+   +    V  P D+        +E +K+               
Sbjct: 107 DCGLFGEMWKMIQEMV---RSPTCVIGPADL--------SEVVKI--------------- 140

Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMGHA-P 232
           L K  +V+ A ++  ++K+ K KP A+TYN + +  ++E            M   G   P
Sbjct: 141 LGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFP 200

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  TY+  +  F K      A  LF+ M+  G     PTAK Y  ++    ++   E+  
Sbjct: 201 DTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGL---HPTAKIYTTLLAIYFKSGD-EKAL 256

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            L+  M + GC P V TY E+++G+  +G+VE+AY     M   G  PD+V  N  + + 
Sbjct: 257 GLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIF 316

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRGCAQD 411
                 ++AL+L+ +M  + C P+V TYN +I   FE   P     +W E M   G    
Sbjct: 317 GKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPS 376

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 377 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGF 408



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 130/311 (41%), Gaps = 46/311 (14%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K   +P++  +N L++   K G ++ A  +  ++++ K  PN  TYN +          
Sbjct: 298 LKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAP 357

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------S 265
                   E+M   G  P +FTY+  ID FCK   V +A  L E M  KG         S
Sbjct: 358 ASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCS 417

Query: 266 TISS-----------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            I++                        +A+ YA+MI  L +  R  E   L   M   G
Sbjct: 418 LINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIG 477

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C PDV  Y  ++ G+  AG +EEA+  L  M   G  PD+ ++N  L  L      ++A 
Sbjct: 478 CNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQAT 537

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++ +M +    P   +YN ++      G  + A +   EM  RG   D  TY  +++ +
Sbjct: 538 EMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAV 597

Query: 423 FDCSKVEEACF 433
               + +E  F
Sbjct: 598 GKVDEDDEPNF 608



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 11/213 (5%)

Query: 279 IVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +V ++   +M  +  S+   + +  C P  STY  ++  +   G  E+ ++   EM N+G
Sbjct: 137 VVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEG 196

Query: 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              PD +TY+  +         D A+RL+  M   G  P+ + Y  L+++YF+ G+ + A
Sbjct: 197 DCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKA 255

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
                EM  +GCA  V TY  +I GL    +VE+A  +   ++  G K      ++ +  
Sbjct: 256 LGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINI 315

Query: 457 LSVIGDLGAIHKLSDHMRKF--------YNPVI 481
               G L    KL D MR          YN VI
Sbjct: 316 FGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVI 348



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 113/282 (40%), Gaps = 52/282 (18%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           LK + +   +K  P +   N ++ AL   K    + A    K   N V P++ TY+IL  
Sbjct: 326 LKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILID 385

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV----------------- 250
                      +  LEEM + G  P    Y + I+   KA+                   
Sbjct: 386 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRS 445

Query: 251 ------------------TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
                             +EA DLF  M+  G    +P    Y  ++  LV+   +EE F
Sbjct: 446 SARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGC---NPDVYAYNALMSGLVRAGMIEEAF 502

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           S L  M  +GC PD++++  +L G+   G+ E+A +   +M +    PD V+YN  L  L
Sbjct: 503 SALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSL 562

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             +   +EA +L   M   G      TY+ ++    ++ E D
Sbjct: 563 SRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDD 604


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 181/409 (44%), Gaps = 39/409 (9%)

Query: 84  VVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLD 143
           +V VL   +    +A RFF WA  Q  +    ++Y++++DIL+        +  V   + 
Sbjct: 50  LVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAY-CVMEKVV 108

Query: 144 YMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC----------KCGLV 193
            +K  N V   +DV+              ++  + ++ L+LD L           KC LV
Sbjct: 109 SVKMENGV---IDVV------------SSSEVSMPSVKLILDLLLWIYVKKSLLEKCLLV 153

Query: 194 DYAETI---------CKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTF 244
            Y             C RV   ++   N  ++   +    M++ G  P   TYNT +D+F
Sbjct: 154 FYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDV-AREVYNVMVECGICPTVVTYNTMLDSF 212

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           CK  MV EA  L   M+  G    SP   TY +++  L  +  ME+   L+  M+  G  
Sbjct: 213 CKKGMVQEALQLLFQMQAMGC---SPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLE 269

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
             V TY  ++ G C  G++EEA +  EEM ++G  P +VTYN  +  LC      +A +L
Sbjct: 270 VSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKL 329

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              M+     P + +YN LI  Y  LG    AF  + E+  R  A  V TY  +IDGL  
Sbjct: 330 LDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCR 389

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              ++ A  L +E++  G       F +++     +G+L    +L D M
Sbjct: 390 LGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEM 438



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNI------------LGMQT 221
           P +   N L+D LC+ G +D A  +  + +K+   P+  T+              +  + 
Sbjct: 375 PSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKEL 434

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  PD F Y T I    K    ++A  + E M  +G     P   TY + I  
Sbjct: 435 FDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF---PPDLITYNVFIDG 491

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   ++E   L+  M+ +G +PD  TY  ++    +AG + +A     EM +KG  P 
Sbjct: 492 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPS 551

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +           A+  +  M E G  P+V TYN LI+   ++ + D A+  + 
Sbjct: 552 VVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFA 611

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM  +G + +  TY ++I+   +    +EA  L ++++++ ++
Sbjct: 612 EMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQ 654



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 20/271 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY----------- 214
           E IK    P++      +   CK G +  A+ +   + N+ ++P+   Y           
Sbjct: 402 EMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLG 461

Query: 215 ---NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GMQ  EEM+  G  PD  TYN  ID   K   + EA++L + M   G     P 
Sbjct: 462 DPSKAFGMQ--EEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV---PD 516

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I A +    + +  +L   M++ G  P V TY  ++    + G+++ A     
Sbjct: 517 HVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFF 576

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  KG  P+++TYN  +  LC  +  D+A   +  M   G  P+  TY +LI+    LG
Sbjct: 577 EMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLG 636

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               A   + +M  R    D  T+  ++  L
Sbjct: 637 HWQEALRLYKDMLDREIQPDSCTHRSLLKHL 667



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 124/320 (38%), Gaps = 57/320 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N ++  LCK G V  A  +   + NK + P+  +YN L                
Sbjct: 305 PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 364

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS---SPTAKTYAIM 278
             E+     AP   TYNT ID  C+        DL   MR K   I     P   T+   
Sbjct: 365 FAELRYRSLAPSVVTYNTLIDGLCRL------GDLDVAMRLKDEMIKHGPDPDVFTFTTF 418

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +    +   +     L   M+N G  PD   Y   + G    G   +A+   EEM  +G+
Sbjct: 419 VRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 478

Query: 339 PPDIVTYNCFLKVLCDNKNGDEA-------------------------------LR---- 363
           PPD++TYN F+  L    N  EA                               LR    
Sbjct: 479 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 538

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  M+  G +PSV TY +LI  Y   G    A   + EM ++G   +V TY  +I+GL 
Sbjct: 539 LFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLC 598

Query: 424 DCSKVEEACFLLEEVVNKGL 443
              K+++A     E+  KG+
Sbjct: 599 KVRKMDQAYNFFAEMQAKGI 618


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 191/439 (43%), Gaps = 44/439 (10%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL---GVPLTTDSVVGVLQRFQFEEKIAF 99
           E S +  ++A+L   ++ + N +   E  L  L   GV LT D +V +L R +   K+A 
Sbjct: 28  EPSPAADELARL---LLAHHNPFHPAESPLQLLSGGGVSLTGDLLVQLLLRLRGASKLAL 84

Query: 100 RFFMWAGHQDNYAHEPLA---YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
                A      A    A   Y+ ++D L   +     +RLV           + F  + 
Sbjct: 85  SLLHAARLHPPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLA 144

Query: 157 VLLMILKQYTEKIK--------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK 208
              +      + ++        V  +P+      LLD LCK      A  +  + K K +
Sbjct: 145 RRYVAAGMTRQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYE 204

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA--------- 247
           PN   Y +L              + L++MI  G  P+  TYN  ++  C+          
Sbjct: 205 PNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRF 264

Query: 248 -RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
            R V  A DL + M  +G     P   +Y++++    +  + E C  +   M   G  P 
Sbjct: 265 DRTVRAAEDLLKEMHQRGI---EPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPT 321

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V+TY  V++ +   G++++A   L+EM ++G  P   TYNCF K     K+ + AL+LY 
Sbjct: 322 VATYTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYN 381

Query: 367 RMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +M   G    P + TYN+L+ M+ +L + D   + W++M +     D+++Y +++ GL D
Sbjct: 382 KMKAPGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCD 441

Query: 425 CSKVEEACFLLEEVVNKGL 443
             K  EAC    E++ +G 
Sbjct: 442 NKKWREACQFFMEMIERGF 460



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     ++  L  CG +D AE++                      L+EM   G  P  
Sbjct: 320 PTVATYTSVIKCLASCGRLDDAESL----------------------LDEMASEGVCPSP 357

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN     +   + V  A  L+  M+  GS  ++P   TY I++   ++ ++ +    +
Sbjct: 358 ATYNCFFKEYRGRKDVNGALQLYNKMKAPGSP-ATPDIHTYNILLGMFIKLNQHDTVMQV 416

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
              M  S   PD+++Y  ++ G+C   K  EA +F  EM  +G+ P  +T+    + L
Sbjct: 417 WNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFLPQKITFETLYRGL 474


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 192/458 (41%), Gaps = 57/458 (12%)

Query: 3   LAHLVSPTEAQYAVLVR--VIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIID 60
           LA  V  TE Q   + R  V R++   + I +  +   +V DE       + K+++   D
Sbjct: 16  LAWRVKQTENQIVQMFRPLVPRSEEAVAPIERRYTRSVRVMDER---FIRILKIFKWGPD 72

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
              A + +   +D   V     + VGV         +  +FF WA  + NY H+   Y  
Sbjct: 73  AEKALEVLMLKVDHWLVREVMKTDVGV--------NVKMQFFRWAAKKRNYEHDTSTYMA 124

Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINAL 180
           +I  L   +    Q+  +  M+  M RN     PV V+  +                  L
Sbjct: 125 LIRCLEVVE----QYGEMWKMIQEMVRN-----PVCVVTPM-----------------EL 158

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEE------------MIQ 227
           + ++  L    ++  A  I  ++K  K +P A  YN + +  + E            M  
Sbjct: 159 SDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSN 218

Query: 228 MGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
            GH  PD  TY+  I  FCK      A  L   M+  G     PTAK Y ++I    + +
Sbjct: 219 EGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGM---QPTAKIYTMLIALFFKLN 275

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +     L   M +  C PDV TY E++ G+  AG+ +EAY F  EM  +G  PD V  N
Sbjct: 276 NVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVIN 335

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDK 405
             +  L      D+A++L+  M  + C PSV TYN +I   FE         +W E M  
Sbjct: 336 NMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKG 395

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G +    TY ++IDG    ++ E+A  LLEE+  KG 
Sbjct: 396 SGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGF 433



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 19/280 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTL---------- 222
           +P+   +N +++ L K G +D A  + + +   +  P+  TYN + ++ L          
Sbjct: 328 RPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTI-IKALFESKSRISEI 386

Query: 223 ----EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
               E M   G +P  FTY+  ID FCK     +A  L E M  KG     P    Y  +
Sbjct: 387 SSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGF---PPCPAAYCSL 443

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I AL +  R +    L   +  +        Y  +++ +  AG++++A    +EM   G 
Sbjct: 444 IDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGC 503

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P++  YN  +  L      DEAL    RM E GC P + +YN++++   + G P  A E
Sbjct: 504 TPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 563

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
               M +     D  +Y  ++  +      EEA  L++E+
Sbjct: 564 MLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEM 603



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 17/275 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           +K + E   ++  P +   N ++ AL   K  + + +    +   + + P+  TY+IL  
Sbjct: 351 VKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILID 410

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  LEEM + G  P    Y + ID   KA+    A +LF+ ++      
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELK---ENC 467

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            S +A+ YA+MI  L +  R+++  +L   M   GC P+V  Y  ++ G+  AG ++EA 
Sbjct: 468 GSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEAL 527

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             +  M   G  PDI +YN  L  L        A+ +   M +    P   +YN ++   
Sbjct: 528 TTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAM 587

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              G  + A +   EM+  G   D+ TY  +++ +
Sbjct: 588 SHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAI 622



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 12/202 (5%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEA 361
           C P    Y  ++  +   G+ E+ ++   EM N+G+  PD VTY+  +   C     D A
Sbjct: 186 CQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSA 245

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           +RL   M + G  P+ + Y MLI+++F+L    GA   + EM  + C  DV TY  +I G
Sbjct: 246 IRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRG 305

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF----- 476
           L    + +EA     E+  +G +      ++ +  L   G L    KL + M        
Sbjct: 306 LGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPS 365

Query: 477 ---YNPVIARRLALNQKRVRIS 495
              YN +I    AL + + RIS
Sbjct: 366 VVTYNTIIK---ALFESKSRIS 384


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 220/520 (42%), Gaps = 63/520 (12%)

Query: 6   LVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAY 65
           + S T A Y  L+R I   S  + +   P        E+    S +     +I+   N  
Sbjct: 5   VTSSTRAGY--LLRRIPFSSTSTLLHTPP--------EAESDPSHLPHHLLSILSKPNWQ 54

Query: 66  DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL 125
           +N   +L SL +P  T S V  L     +   A +F  W     N+ H   +Y  ++ ++
Sbjct: 55  NN--PSLKSL-LPAITPSHVSSLFSLNLDPHTALQFSYWISQTPNFKHNVDSYASLLTLI 111

Query: 126 SSTKYKAKQFRLVCSML----------------------DYMKRNNKVFVPVDVLLMIL- 162
              K  +   +++ SM+                      D  K + K +  +  LL    
Sbjct: 112 DHHKIVSDVPKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFG 171

Query: 163 ------KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPN--ANT 213
                 + YTE ++     +I   NL+++  CK G V  A+  +CK ++  + P+   +T
Sbjct: 172 LVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTST 231

Query: 214 YNILG----------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
             ILG           +  EEM       +  +YN  I   C+A  + EA  LF  M+  
Sbjct: 232 SFILGYCRSKDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMK-- 285

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
                 P   TY  +I  L + + + +   LL  M+    +PD+ TY  ++ G C AG +
Sbjct: 286 -DDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHL 343

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           + AY+ L  M  +G  PD  TY CF+  LC +   +EA RL+  + E G   +V  Y++L
Sbjct: 344 DSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVL 403

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I  Y ++G+ D A   + +M  + C+ +  T+  +I GL     ++EA  L +++V  GL
Sbjct: 404 IDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGL 463

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483
           K     F+  + ++   GD    HK    M       +AR
Sbjct: 464 KPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVAR 503



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 178/387 (45%), Gaps = 40/387 (10%)

Query: 117 AYNLMIDILSSTKY--KAKQFRLVCSML------DYMKRNNKVF-----VPVDVLLMILK 163
            +NLMI++     +  +AKQF  +C M+      DY    + +        VD    + +
Sbjct: 194 TFNLMINVYCKMGFVKEAKQF--MCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFE 251

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL----- 217
           +   + +V       + N L+  LC+ G +D A ++  R+K+    PN  TY  L     
Sbjct: 252 EMPNRNEV-------SYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLC 304

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  M  L+EM++    PD  TYN+ I   C+A  +  A  L   M+ +G     P 
Sbjct: 305 RKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLV---PD 361

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            +TY   I  L +++R+EE   L   +   G   +V  Y  +++G C  GKV+EA    E
Sbjct: 362 QRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFE 421

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M +K   P+  T+N  +  LC   N  EAL L+ +M+++G  P+V T+N+LI    + G
Sbjct: 422 KMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQG 481

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + D A +   +M   G      TY   I+      KV+EA  ++ ++  +G  +P   F 
Sbjct: 482 DFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG--VPPDDF- 538

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKFYN 478
           +Y   +   G LG  +   D ++  ++
Sbjct: 539 TYTSLIKAYGKLGLTYSAFDVLKSMFD 565



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 16/263 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L+   C+ G +D A  +   +K + + P+  TY                 + 
Sbjct: 325 PDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRL 384

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            + + + G + +   Y+  ID +CK   V EA  LFE M +K     SP A T+  +I  
Sbjct: 385 FDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNC---SPNAYTFNALIHG 441

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L     ++E  SL   M+  G  P V T+  ++  M   G  ++A+K L++M + G  P 
Sbjct: 442 LCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPV 501

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN F++V C      EA  +  +M E G  P   TY  LI  Y +LG    AF+   
Sbjct: 502 ARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLK 561

Query: 402 EMDKRGCAQDVDTYCVMIDGLFD 424
            M    C     T+  +I  LFD
Sbjct: 562 SMFDADCEPSHHTFLSLIKQLFD 584



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 135/333 (40%), Gaps = 49/333 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           L  + + +K+  +P +   N+L+  + K G  D A + + K + +  KP A TYN     
Sbjct: 452 LSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEV 511

Query: 218 -----GMQTLEEM-IQM---GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                 +Q  E+M +QM   G  PD+FTY + I  + K  +   A   F+ +++      
Sbjct: 512 YCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSA---FDVLKSMFDADC 568

Query: 269 SPTAKTYAIMIVALVQNDRMEE-----------------------------CFSLLGHMI 299
            P+  T+  +I  L     + E                                L   M 
Sbjct: 569 EPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEME 628

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GC PD   Y++++ G+C    +  A K L++M  +G  P  + +N  +   C  +   
Sbjct: 629 KHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYG 688

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD--TYCV 417
           EA  +   MI  G  P ++    LI   +E GE +     + ++  RGC  + D   + +
Sbjct: 689 EAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKL--RGCGYNDDEIAWKI 746

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           +IDG+     VEE   L EE+   G     R +
Sbjct: 747 LIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTY 779


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 153/330 (46%), Gaps = 34/330 (10%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           I+   +P + A N L+  LC  G ++ A  +C ++ ++   PN  TY+IL          
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL 400

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +T   MI  G  P+  TY   +D  CK  M  +A  L E M  +G T   P   T+
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT---PNTITF 457

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
              I  L  N R+E    LL  M   GCLP+++TY E+L+ +    K EEA+   +E+  
Sbjct: 458 NTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA 517

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG---- 391
           +   P++VTYN  L          EAL+L+G+ +  G  P   TYN +I  Y + G    
Sbjct: 518 RNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKI 577

Query: 392 -----EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                E   + + WH         D+ TY  +I G  +   +EEA   L++ +N+G+   
Sbjct: 578 AAQLVERVSSMKEWHP--------DIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPN 629

Query: 447 YRKFDSYLMQ-LSVIGDLGAIHKLSDHMRK 475
           +  +++ +      +G +G IH L D +RK
Sbjct: 630 FATWNALVRCFFDSLGHMGPIHILDDILRK 659



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 164/348 (47%), Gaps = 20/348 (5%)

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195
           R+   +LD +   NK         MI   YT   K    P +   N+LL ALCK   VD 
Sbjct: 145 RIYNHLLDALLSENK-------FQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDA 197

Query: 196 AETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHA--------PDNFTYNTAIDTFCK 246
           A  +   + NK   P+A TY  + + +L +  ++  A        P    YN  ID  CK
Sbjct: 198 AHKLFVEMSNKGCPPDAVTYTTM-VSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCK 256

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              +  A  L   M   G     P   +Y+ +I +L  +  +E  F+L   M   GC  +
Sbjct: 257 EGRIEVAIKLLGEMMDNGV---DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDAN 313

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           + T+  +++G  + GK+ EA    + M   G  P++V YN  +  LC N + +EAL++  
Sbjct: 314 IHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCD 373

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           +M   GC P+V TY++LI  + + G+  GA ETW+ M   GC  +V TY  M+D L   S
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNS 433

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             ++A  L+E++  +G       F++++  L   G +    KL + M+
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQ 481



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 140/311 (45%), Gaps = 16/311 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNI------------LG 218
           + +P +   N L+D +CK G ++ A + + + + N V PN  +Y+             L 
Sbjct: 239 RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA 298

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                +M   G   +  T+   I        + EA DL++ M   G     P    Y  +
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC---EPNVVAYNTL 355

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L  N  +EE   +   M  SGCLP+V+TY  +++G   +G +  A +    M + G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P++VTY C + VLC N   D+A  L  +M   GC P+  T+N  I      G  + A +
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
               M   GC  ++ TY  ++D LF  +K EEA  L +E+  + L+     +++ L   S
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 459 VIGDLGAIHKL 469
             G +G   +L
Sbjct: 536 RAGMMGEALQL 546



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 23/316 (7%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++D M +  ++ V + +L        E +     P + + + ++++LC  G V+ A  +
Sbjct: 249 ALIDGMCKEGRIEVAIKLL-------GEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 200 -CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             +        N +T+  L             +   + MIQ G  P+   YNT I   C 
Sbjct: 302 FAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCS 361

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              + EA  + + M+  G     P   TY+I+I    ++  +         MI+ GC P+
Sbjct: 362 NGSLEEALQVCDQMQRSGCL---PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPN 418

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V TY  +++ +C     ++A   +E+M  +G  P+ +T+N F+K LC N   + A++L  
Sbjct: 419 VVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLE 478

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           RM   GC P++ TYN L+   F + + + AF  + E++ R    ++ TY  ++ G     
Sbjct: 479 RMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAG 538

Query: 427 KVEEACFLLEEVVNKG 442
            + EA  L  + + +G
Sbjct: 539 MMGEALQLFGKALVRG 554



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 8/249 (3%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G  P    YN  +D             L+  M+  G     P   TY I++ AL +ND
Sbjct: 137 EFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI---PNVFTYNILLKALCKND 193

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R++    L   M N GC PD  TY  ++  +C AGK+++A     E+  + + P +  YN
Sbjct: 194 RVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELAGR-FKPSVPVYN 248

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  +C     + A++L G M++ G  P+V +Y+ +I+     G  + AF  + +M  R
Sbjct: 249 ALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR 308

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  ++ T+  +I G F   K+ EA  L + ++  G +     +++ +  L   G L   
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 467 HKLSDHMRK 475
            ++ D M++
Sbjct: 369 LQVCDQMQR 377



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 4/175 (2%)

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEG 316
           F     S     TA TY +MI  L +   M+    +L  M   G  C  D+  +  ++ G
Sbjct: 61  FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL--FICIING 118

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
               G  E+A K    +G  G  P +  YN  L  L           LY  M + G  P+
Sbjct: 119 YKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPN 178

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           V TYN+L+    +    D A + + EM  +GC  D  TY  M+  L    K+++A
Sbjct: 179 VFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA 233


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 140/284 (49%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P+    N L+  LC  G    A  + + + +    P+  TY IL             M+
Sbjct: 163 EPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMK 222

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM   G APD  TYN  ++  C+   V +A    EF++   S    P   +Y I++ 
Sbjct: 223 LLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDA---MEFLKNLPSYGCEPNTVSYNIVLK 279

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L   +R E+   L+  M + GC P+V T+  ++  +C  G VE A + LE+M   G  P
Sbjct: 280 GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTP 339

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + ++YN  L   C  K   +A+     M+  GC+P + +YN L++     GE D A E  
Sbjct: 340 NSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELL 399

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           H++  +GC+  + +Y  +IDGL    K +EA  LL+E+ +KGL+
Sbjct: 400 HQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQ 443



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 136/269 (50%), Gaps = 25/269 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +   N+L+  LC+ GLV+ A                      M+ LE+M Q G  P++
Sbjct: 304 PNVVTFNMLISFLCRRGLVEPA----------------------MEVLEQMPQYGCTPNS 341

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            +YN  +  FCK + + +A +  E M ++G     P   +Y  ++ AL +N  ++    L
Sbjct: 342 LSYNPLLHAFCKQKKIHKAMEFVELMVSRGCY---PDIVSYNTLLTALCRNGEVDVAIEL 398

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  + + GC P + +Y  V++G+  AGK +EA + L+EM +KG  PDI+TY+     LC 
Sbjct: 399 LHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCR 458

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               +EA+R + ++ ++G  P+   YN ++    +  E   A + +  M   GC  +  T
Sbjct: 459 EDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNEST 518

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y ++++GL     V+EA  L  ++ ++G+
Sbjct: 519 YTILVEGLAYEGLVKEARELFAQLCSRGV 547



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 145/312 (46%), Gaps = 23/312 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLEE----MIQMGHAPD 233
           L+  LC  G    A    +RV     P+   YN +     G   L+     +  M   PD
Sbjct: 110 LIKKLCASGRTADA----RRVLAASGPDVMVYNAMVAGYCGAGQLDAARRLVADMPVEPD 165

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            +TYNT I   C     + A  + E M  +G     P   TY I++ A  +    ++   
Sbjct: 166 AYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCL---PDVVTYTILLEATCKRSGYKQAMK 222

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  M + GC PD+ TY  VL G+C  G+VE+A +FL+ + + G  P+ V+YN  LK L 
Sbjct: 223 LLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLF 282

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +  ++A +L   M   GC P+V T+NMLIS     G  + A E   +M + GC  +  
Sbjct: 283 TAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSL 342

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA----IHKL 469
           +Y  ++       K+ +A   +E +V++G       +++ L  L   G++      +H+L
Sbjct: 343 SYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQL 402

Query: 470 SDHMRKFYNPVI 481
            D   K  +PV+
Sbjct: 403 KD---KGCSPVL 411


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 175/396 (44%), Gaps = 54/396 (13%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           + EKA++ L + +    V  VL     E +   +FF WAG + ++ H+   Y  +I  L 
Sbjct: 77  DAEKAIEVLKLKVDHRLVHQVLD-IDVEIRAKIQFFKWAGKRQHFQHDSTTYMALIRCLE 135

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
            +    + +R +  M+    R+     P         +++E +K+               
Sbjct: 136 ESGLVDEMWRTIQDMI----RSPCSVGPA--------EWSEILKI--------------- 168

Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEEMIQMGH--------------- 230
           L K  +V+ A ++  ++K  K  P A  YN L +  + E    GH               
Sbjct: 169 LGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHE----GHHEKIHELYNEICSEG 224

Query: 231 --APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
             +PD  TY+  I  F K      A  LF+ M+  G     PT K Y  ++    + +++
Sbjct: 225 NCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGL---HPTEKIYTTILAMYFKLNKV 281

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L+  M   GC P V TY E+++G+   G+V++AY     M   G  PD+V  N  
Sbjct: 282 EAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNL 341

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRG 407
           + +L      ++AL+L+G+M  + C P+V TYN +I   FE   P      W E M   G
Sbjct: 342 INILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANG 401

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            A    TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 402 IAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGF 437



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 130/310 (41%), Gaps = 49/310 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K   +P++  +N L++ L + G ++ A  +  ++ + +  PN  TYN +          
Sbjct: 327 LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAP 386

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------S 265
                   E+M   G AP +FTY   ID FCK   V +A  L E M  KG         S
Sbjct: 387 ASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCS 446

Query: 266 TISS-----------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            I S                        +A+ YA+MI       R+ +   L   M   G
Sbjct: 447 LIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLG 506

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C PDV TY  ++ GM  AG ++EA+  +  M   G  PDI ++N  L  L        A+
Sbjct: 507 CSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAI 566

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++ +M E    P   +YN ++S     G  + A +   EM  +G   D  TY  +++ +
Sbjct: 567 EMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV 626

Query: 423 FDCSKVEEAC 432
               KV+E C
Sbjct: 627 ---GKVDEDC 633



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 10/233 (4%)

Query: 248 RMVTEAADLFEFMRTKGSTISSPTA---KTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           R + E+  + E  RT    I SP +     ++ ++  L +   + +  S+   +    C 
Sbjct: 132 RCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCN 191

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALR 363
           P  + Y  ++  +   G  E+ ++   E+ ++G   PD +TY+  +      +  D A R
Sbjct: 192 PTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFR 251

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  M E G  P+ + Y  +++MYF+L + + A     EM  +GCA  V TY  +I GL 
Sbjct: 252 LFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLG 311

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
              +V++A  L   ++  G K      D  L+  ++I  LG   +L D ++ F
Sbjct: 312 KVGRVDDAYSLFFNMLKDGCKP-----DVVLIN-NLINILGRAGRLEDALKLF 358


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 175/396 (44%), Gaps = 54/396 (13%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           + EKA++ L + +    V  VL     E +   +FF WAG + ++ H+   Y  +I  L 
Sbjct: 77  DAEKAIEVLKLKVDHRLVHQVLD-IDVEIRAKIQFFKWAGKRQHFQHDSTTYMALIRCLE 135

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
            +    + +R +  M+    R+     P         +++E +K+               
Sbjct: 136 ESGLVDEMWRTIQDMI----RSPCSVGPA--------EWSEILKI--------------- 168

Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEEMIQMGH--------------- 230
           L K  +V+ A ++  ++K  K  P A  YN L +  + E    GH               
Sbjct: 169 LGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHE----GHHEKIHELYNEICSEG 224

Query: 231 --APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
             +PD  TY+  I  F K      A  LF+ M+  G     PT K Y  ++    + +++
Sbjct: 225 NCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGL---HPTEKIYTTILAMYFKLNKV 281

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L+  M   GC P V TY E+++G+   G+V++AY     M   G  PD+V  N  
Sbjct: 282 EAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNL 341

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRG 407
           + +L      ++AL+L+G+M  + C P+V TYN +I   FE   P      W E M   G
Sbjct: 342 INILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANG 401

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            A    TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 402 IAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGF 437



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 129/310 (41%), Gaps = 49/310 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K   +P++  +N L++ L + G ++ A  +  ++ + +  PN  TYN +          
Sbjct: 327 LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAP 386

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------S 265
                   E+M   G AP +FTY   ID FCK   V +A  L E M  KG         S
Sbjct: 387 ASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCS 446

Query: 266 TISS-----------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            I S                        +A+ YA+MI       R+ +   L       G
Sbjct: 447 LIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLG 506

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C PDV TY  ++ GM  AG ++EA+  +  M   G  PDI ++N  L  L        A+
Sbjct: 507 CSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAI 566

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++ +M E    P   +YN ++S     G  + A +   EM  +G   D  TY  +++ +
Sbjct: 567 EMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV 626

Query: 423 FDCSKVEEAC 432
               KV+E C
Sbjct: 627 ---GKVDEDC 633



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 10/233 (4%)

Query: 248 RMVTEAADLFEFMRTKGSTISSPTA---KTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           R + E+  + E  RT    I SP +     ++ ++  L +   + +  S+   +    C 
Sbjct: 132 RCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCN 191

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALR 363
           P  + Y  ++  +   G  E+ ++   E+ ++G   PD +TY+  +      +  D A R
Sbjct: 192 PTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFR 251

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  M E G  P+ + Y  +++MYF+L + + A     EM  +GCA  V TY  +I GL 
Sbjct: 252 LFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLG 311

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
              +V++A  L   ++  G K      D  L+  ++I  LG   +L D ++ F
Sbjct: 312 KVGRVDDAYSLFFNMLKDGCKP-----DVVLIN-NLINILGRAGRLEDALKLF 358


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 193/430 (44%), Gaps = 41/430 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E  L+   V L+   +  VL++      +A   F WA +Q  + H    YN +I+ L  
Sbjct: 83  VETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLG- 141

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------Q 174
              K KQF+L+ +++D MK+  K  +  D   +I ++Y    KVK              +
Sbjct: 142 ---KIKQFKLIWNLVDDMKQ--KKLLSKDTFALISRRYARARKVKEAITAFHKMEDYGFK 196

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----GMQ--------T 221
            E +  N +LD L K   V  A+ +  ++K K  +P+  +Y IL    G +         
Sbjct: 197 MESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEV 256

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G  PD   Y   I+ +CKA+   EA   F  M  +      P+   +  +I  
Sbjct: 257 YGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNC---KPSPHIFCSLING 313

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ +         +SG   +  TY  ++   C + ++E+A+K ++EM +KG  P+
Sbjct: 314 LGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRSKGIGPN 373

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+  L  L   +   EA  +Y +M    C P+V TY +++ M+      D A + W 
Sbjct: 374 ARTYDIILHHLIRMQRTKEAYEVYQKM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWD 430

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM  +G    +  +  +I  L   +K++EAC    E+++ G++ P   F S L Q   + 
Sbjct: 431 EMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLF-SRLKQ--TLL 487

Query: 462 DLGAIHKLSD 471
           D G   K++D
Sbjct: 488 DEGRKDKVAD 497



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 42/356 (11%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD-NYAHEPLAYNLMIDILSSTKYKAKQFRL 137
           L+ D+   + +R+    K+      +   +D  +  E   +N M+DILS    K++    
Sbjct: 162 LSKDTFALISRRYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILS----KSRNVGD 217

Query: 138 VCSMLDYMKRNNKVFVPVDV---------------LLMILKQYTEKIKVKTQPEINALNL 182
              + D MK+  K F P D+               LL + + Y E      +P++ A  +
Sbjct: 218 AQKVFDKMKK--KRFEP-DIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGI 274

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTY----NILG--------MQTLEEMIQMG 229
           +++A CK    D A      ++ +  KP+ + +    N LG        ++  E     G
Sbjct: 275 IINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSG 334

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              +  TYN  +  +C ++ + +A    + MR+KG     P A+TY I++  L++  R +
Sbjct: 335 FPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRSKGI---GPNARTYDIILHHLIRMQRTK 391

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E + +   M    C P VSTY+ ++   C   +++ A K  +EM  KG  P +  ++  +
Sbjct: 392 EAYEVYQKM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLI 448

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
             LC     DEA   +  M++VG  P    ++ L     + G  D   +   +MD+
Sbjct: 449 TALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKMDR 504



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 20/289 (6%)

Query: 171 VKTQPEINALNLLLDALCK--CGLVDY-AETICKRVKNKVKP-----------NANTYNI 216
           V+TQ   N ++   D +CK      D   ET+      K+ P           NA    +
Sbjct: 55  VETQVSANDVSQDADKICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLAL 114

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              +  E      H   N  YN  I++  K +      +L + M+ K       +  T+A
Sbjct: 115 SVFKWAENQKGFKHTTSN--YNALIESLGKIKQFKLIWNLVDDMKQKKLL----SKDTFA 168

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++     +  +++E  +    M + G   + S +  +L+ +  +  V +A K  ++M  K
Sbjct: 169 LISRRYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKK 228

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
            + PDI +Y   L+      N      +YG M + G  P V  Y ++I+ Y +  + D A
Sbjct: 229 RFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEA 288

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
              ++EM++R C      +C +I+GL    K+ +A    E   + G  L
Sbjct: 289 VRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPL 337


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 153/340 (45%), Gaps = 43/340 (12%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175
           +AYN +ID L          RLV   +D+                    ++E +K    P
Sbjct: 81  VAYNTIIDSLCKD-------RLVTEAMDF--------------------FSEMVKEGIPP 113

Query: 176 EINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTL 222
           ++   + +L   C  G V+ A ++ K+ V+  V PN  T+ IL                 
Sbjct: 114 DVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVF 173

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E M + G  PD +TYN  +D +C    + EA  LF  M  KG    +P  ++Y I+I   
Sbjct: 174 ETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGC---APNVRSYNILINGH 230

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++ R++E   LL  M +    PD+ TY  ++ G C  G+ +EA + L+EM + G  P++
Sbjct: 231 CKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNL 290

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +TY+  L  LC + + DEA  L   M E    P++  Y +LI      G+ + A E +  
Sbjct: 291 ITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSN 350

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +  +G    V TY VMI GL       EAC L  E+   G
Sbjct: 351 LFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNG 390



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 170 KVKTQPEINALNLLLDALC-KCGLVDYAETICKRVKNKVKPNANTYNI------------ 216
           K+  QP +   N LL  LC K  ++D  +   + VK   +P+  TY+             
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTT 62

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           + +Q L++M + G  P+   YNT ID+ CK R+VTEA D F  M  +G     P   TY+
Sbjct: 63  MALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGI---PPDVFTYS 119

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++       R+ E  SL   M+    +P+  T+  +++G+C    + EA+   E M  K
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD+ TYN  +   C     DEA +L+  M   GC P+V++YN+LI+ + + G  D A
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                EM  +    D+ TY  ++ G     + +EA  LL+E+ + GL LP
Sbjct: 240 KGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGL-LP 288



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 19/299 (6%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL 217
           L +LK+  EK     +P + A N ++D+LCK  LV  A +   + VK  + P+  TY+ +
Sbjct: 65  LQLLKKMEEK---GCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                            ++M++    P+  T+   ID  CK RM++EA  +FE M  KG 
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY  ++       +M+E   L   M   GC P+V +Y  ++ G C +G+++E
Sbjct: 182 ---EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A   L EM +K   PDI TY+  ++  C      EA  L   M   G  P++ TY++++ 
Sbjct: 239 AKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLD 298

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              + G  D AFE    M +     ++  Y ++I+G+    K+E A  L   +  KG++
Sbjct: 299 GLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQ 357



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 126/274 (45%), Gaps = 19/274 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           ++ +  TEK     +P++   N L+D  C    +D A+ +   +  K   PN  +YNIL 
Sbjct: 171 LVFETMTEK---GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILI 227

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                          L EM      PD FTY+T +  FC+     EA +L + M + G  
Sbjct: 228 NGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLL 287

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY+I++  L ++  ++E F LL  M  S   P++  Y  ++EGMC  GK+E A
Sbjct: 288 ---PNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAA 344

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +    +  KG  P +VTY   +  L      +EA  L+  M   GC P+  TYN++I  
Sbjct: 345 RELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQG 404

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           +   G+   A     EM  +G + D  T+ ++ D
Sbjct: 405 FLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 38/254 (14%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M ++G  P   T+NT +   C    + +A  LF+ M   G     P   TY+ +I  L +
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMG---HEPDVITYSTIINGLCK 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
                    LL  M   GC P+V  Y  +++ +C    V EA  F  EM  +G PPD+ T
Sbjct: 58  MGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMI----------------------------------- 369
           Y+  L   C+    +EA  L+ +M+                                   
Sbjct: 118 YSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMT 177

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           E G  P V TYN L+  Y    + D A + ++ MD++GCA +V +Y ++I+G     +++
Sbjct: 178 EKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRID 237

Query: 430 EACFLLEEVVNKGL 443
           EA  LL E+ +K L
Sbjct: 238 EAKGLLAEMSHKSL 251



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P +VT+N  L  LC      +A++L+  M+++G  P V TY+ +I+   ++G    A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            +   +M+++GC  +V  Y  +ID L     V EA     E+V +G+      + S L  
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 457 LSVIGDLGAIHKLSDHM 473
              +G +     L   M
Sbjct: 125 FCNLGRVNEATSLFKQM 141


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 149/321 (46%), Gaps = 21/321 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N+++ + C  G +D A E   + +K+  +P   TY IL             M+ 
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM+  G  PD  TYN  I   CK  MV +A   FE +R+  S    P   TY I++  
Sbjct: 231 LDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKA---FELLRSLSSRGCKPDIITYNILLRT 287

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L+   +  E   L+  MI+ GC P+V T+  ++  +C  GKVEEA   L  M  KG  PD
Sbjct: 288 LLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPD 347

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              Y+  +   C     D A      MI  GC P +  YN +++     G+ D A E + 
Sbjct: 348 AYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFE 407

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLMQLS 458
           ++D+ GC  +V +Y  +   L+       A  ++ +++N+G+   ++ Y    S L +  
Sbjct: 408 KLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDG 467

Query: 459 VIGDLGAIHKLSDHMRKFYNP 479
           ++ +  AI  L D     Y P
Sbjct: 468 MVDE--AIELLVDMQSGRYRP 486



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 19/301 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +DV + +L +   K     +P+    N ++  +CK  +VD A  + + + ++  KP+  T
Sbjct: 224 IDVAMKLLDEMLSK---GLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIIT 280

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YNIL            G + + EMI +G  P+  T++  I T C+   V EA +L   M+
Sbjct: 281 YNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMK 340

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            KG     P A  Y  +I    +  R++     L +MI+ GCLPD+  Y  ++ G+C  G
Sbjct: 341 EKGL---KPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTG 397

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K ++A +  E++   G PP++ +YN     L  + +   AL +  +++  G  P   TYN
Sbjct: 398 KADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYN 457

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LIS     G  D A E   +M       +V +Y +++ GL   ++  +A  +L  +  K
Sbjct: 458 SLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEK 517

Query: 442 G 442
           G
Sbjct: 518 G 518



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 3/238 (1%)

Query: 207 VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           +K   N+ NI     + E+++    PD F YN  I  F KA  +  A  + + M+++G  
Sbjct: 111 IKGFFNSRNIGKATRVMEILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFL 170

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY IMI +     +++    +   ++   C P V TY  ++E   L G ++ A
Sbjct: 171 ---PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVA 227

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            K L+EM +KG  PD +TYN  ++ +C     D+A  L   +   GC P + TYN+L+  
Sbjct: 228 MKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRT 287

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               G+     +   EM   GC  +V T+ ++I  L    KVEEA  LL  +  KGLK
Sbjct: 288 LLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLK 345



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           KP+   YN L              + L+ M   G  PD  TYN  I +FC    +  A +
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           +FE +         PT  TY I+I A + +  ++    LL  M++ G  PD  TY  ++ 
Sbjct: 195 IFEELLKDNC---EPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIR 251

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           GMC    V++A++ L  + ++G  PDI+TYN  L+ L       E  +L   MI +GC P
Sbjct: 252 GMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKP 311

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +V T+++LI      G+ + A      M ++G   D   Y  +I G     +++ A   L
Sbjct: 312 NVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFL 371

Query: 436 EEVVNKG 442
           E +++ G
Sbjct: 372 EYMISDG 378



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PDV  Y  ++ G   A ++E A + L+ M ++G+ PD+VTYN  +   C     D AL +
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  +++  C P+V TY +LI      G  D A +   EM  +G   D  TY  +I G+  
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              V++A  LL  + ++G K     ++  L  L   G      KL   M
Sbjct: 256 EMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEM 304



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 16/168 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+I   N ++  LC+ G  D A  + +++      PN ++YN L             ++ 
Sbjct: 381 PDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEM 440

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + +++  G  PD  TYN+ I   C+  MV EA +L   M+   S    P   +Y I+++ 
Sbjct: 441 ILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQ---SGRYRPNVVSYNIILLG 497

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           L + +R  +   +L  M   GC P+ +TY  ++EG+  +G   EA + 
Sbjct: 498 LCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMEL 545



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 1/158 (0%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +  E    L  M++ G  PDV    ++++G   +  + +A + +E +   G  PD+  YN
Sbjct: 84  KYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDVFAYN 142

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +         + A R+  RM   G  P V TYN++I  +   G+ D A E + E+ K 
Sbjct: 143 ALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKD 202

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            C   V TY ++I+       ++ A  LL+E+++KGL+
Sbjct: 203 NCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLE 240


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 151/297 (50%), Gaps = 21/297 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++  L +++++LC    VD+A   + K +K   +P+A T+  L             +  
Sbjct: 78  PDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 137

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++MI  G  P+  TY T I+  CK R VTEA ++F  M TKG    SP   TY  +I  
Sbjct: 138 FDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGI---SPNIVTYNSLIHG 194

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +    +   +L+  M++S  +PDV T   V++ +C  G V EA+  ++ M ++G  P+
Sbjct: 195 LCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN 254

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +   C     D A++++  M+   C  +V +YN LI+ Y ++   D A   + 
Sbjct: 255 VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFE 314

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFDSYL 454
           EM ++    +  TY  +I GL    ++++A  L  E+V +G ++P    YR    YL
Sbjct: 315 EMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG-QIPDLVTYRTLSDYL 370



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +  K  P++  LN ++DALCK G+V  A  +   + ++ V+PN  TYN L        
Sbjct: 210 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 269

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M+      +  +YNT I+ +CK + V +A  LFE M  +  T   P   
Sbjct: 270 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT---PNTV 326

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R+++  SL   M+  G +PD+ TY+ + + +C    +++A   L+ +
Sbjct: 327 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI 386

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
               + PDI  Y   L  +C     ++A  L+  +   G  P+V TYN++I    + G  
Sbjct: 387 EGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLL 446

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             A + + EM+K GC+ +  TY ++  G    ++      LLEE++ +G  +
Sbjct: 447 AEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSV 498



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 141/304 (46%), Gaps = 50/304 (16%)

Query: 162 LKQYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           +K Y+  + + TQ       P++  LN+L+++ C    + YA ++               
Sbjct: 594 MKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV--------------- 638

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  L +++++G  PD  TY T ++  CK             M TKG    SP   T
Sbjct: 639 -------LAKLLKLGFQPDVVTYGTLMNGLCK-------------MITKGI---SPDIFT 675

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I AL      +   +LL  M+NS  +P+V  +  V++ +C  G +  A+  ++ M 
Sbjct: 676 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 735

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            +G  PD+VTY   +   C     DEA++++  M+  GC P+V++YN+LI+ Y ++   D
Sbjct: 736 KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMD 795

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKF 450
            A     +M  +G   D  TY  +I GL    +++ A  L  E+V  G ++P    YR  
Sbjct: 796 KAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG-QIPDLVTYRIL 854

Query: 451 DSYL 454
             YL
Sbjct: 855 LDYL 858



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 116/265 (43%), Gaps = 25/265 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E +  K  P +   + ++DALCK G++  A  +                      ++ MI
Sbjct: 698 EMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV----------------------VDMMI 735

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G  PD  TY   +D  C    + EA  +F+ M  KG     P  ++Y I+I    Q  
Sbjct: 736 KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCV---PNVRSYNILINGYCQIQ 792

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           RM++   LL  M   G + D  TY  ++ G+C  G+++ A     EM   G  PD+VTY 
Sbjct: 793 RMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 852

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L  LC N +  EA+ L   +        +  YN+ I      GE + A + +  +  +
Sbjct: 853 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSK 912

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEA 431
           G   DV TY +MI GL     ++EA
Sbjct: 913 GLQPDVRTYNIMIHGLCKRGLLDEA 937



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 23/248 (9%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++D + +   + +  DV+ M++K+  E       P++     L+D  C    +D A  +
Sbjct: 713 TVVDALCKEGMIAIAHDVVDMMIKRGVE-------PDVVTYTALMDGHCLRSEMDEAVKV 765

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              + +K   PN  +YNIL             M  LE+M   G   D  TYNT I   C 
Sbjct: 766 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 825

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              +  A  LF  M   G     P   TY I++  L +N  + E   LL  +  S    D
Sbjct: 826 VGRLQHAIALFHEMVASGQI---PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 882

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +  Y   ++GMC AG++E A      + +KG  PD+ TYN  +  LC     DEA +L+ 
Sbjct: 883 ILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFR 942

Query: 367 RMIEVGCW 374
           +M E   W
Sbjct: 943 KMDENDIW 950



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 16/224 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L++  CK   VD A  + + + + ++ PN  TYN L             +    EM+ 
Sbjct: 294 NTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVA 353

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  TY T  D  CK R + +A  L + +  +GS    P  + Y  ++  + +   
Sbjct: 354 RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI--EGSNWD-PDIQIYTTILDGMCRAGE 410

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   L  ++ + G  P+V TY  ++ G+C  G + EA K   EM   G  P+  TYN 
Sbjct: 411 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 470

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
             +    N      + L   M+  G    V T  +L+ M  + G
Sbjct: 471 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 514



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +  ++ ++ +        SL   M + G  PDV T   V+  +C   +V+ A+  
Sbjct: 43  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L ++   G+ PD  T+   ++ LC      EAL L+ +MI  G  P+V TY  LI+   +
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
             +   AF  + EM  +G + ++ TY  +I GL    + +    L+ E+V+  +      
Sbjct: 163 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 222

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
            ++ +  L   G +   H + D M
Sbjct: 223 LNTVVDALCKEGMVAEAHDVVDMM 246



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 111/273 (40%), Gaps = 29/273 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+I     +LD +C+ G ++ A  +   + +K ++PN  TYNI+              + 
Sbjct: 393 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 452

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM + G +P++ TYN     F +        +L E M  +G ++   T      ++V 
Sbjct: 453 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTT----LLVG 508

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA------------GKVEEAYKF 329
           ++ +D +++    +    +S   P  +  + +      +              +++A   
Sbjct: 509 MLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSS 568

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              M +   PP  V +   L  +   K+    L L  +M   G  P V T N+LI+ +  
Sbjct: 569 FNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCH 628

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           L     AF    ++ K G   DV TY  +++GL
Sbjct: 629 LRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGL 661



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 130/369 (35%), Gaps = 104/369 (28%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILG------------MQ 220
           QP +   N+++  LCK GL+  A  +   + KN   PN  TYN++             ++
Sbjct: 427 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 486

Query: 221 TLEEMIQMGHAPDNFTYNTAI-------------DTFCKARMVTEAAD--------LF-- 257
            LEEM+  G + D  T    +                CK    +  +         LF  
Sbjct: 487 LLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLS 546

Query: 258 ----------EFMRTKGSTISS----------PTAKTYAIMIVALVQNDRMEECFSLLGH 297
                         T    +SS          P+   +  ++ ++ +        SL   
Sbjct: 547 SSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQ 606

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M + G  PDV T   ++   C   ++  A+  L ++   G+ PD+VTY   +  LC    
Sbjct: 607 MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC---- 662

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE------------------------- 392
                    +MI  G  P + TYN LI     L E                         
Sbjct: 663 ---------KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFST 713

Query: 393 ------PDGAFETWHE----MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
                  +G     H+    M KRG   DV TY  ++DG    S+++EA  + + +V+KG
Sbjct: 714 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 773

Query: 443 LKLPYRKFD 451
                R ++
Sbjct: 774 CVPNVRSYN 782



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 70/172 (40%)

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           + ++E  S    M++    P    +  +L  +              +M + G PPD+ T 
Sbjct: 24  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  LC     D A     +++++G  P   T+  LI      G+   A   + +M  
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            G   +V TY  +I+GL    +V EA  +  E++ KG+      ++S +  L
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGL 195



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 50/115 (43%)

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           DEAL  + RM+     PS   +N L++   +            +MD  G   DV T  ++
Sbjct: 27  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 86

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           I+ L   ++V+ A   L +++  G +     F + +  L V G +G    L D M
Sbjct: 87  INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 141


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 137/283 (48%), Gaps = 30/283 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           Y E I+ K QP +   N++++ALCK G ++ A  +                      +E+
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDV----------------------MED 248

Query: 225 MIQMGHAPDNFTYNTAIDTFCK----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           M   G +P+  +YNT ID +CK     +M    A L E +        SP   T+ I+I 
Sbjct: 249 MKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEND----VSPNLTTFNILID 304

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              ++D +     +   M++    P+V +Y  ++ G+C  GK+ EA    ++M + G  P
Sbjct: 305 GFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQP 364

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +++TYN  +   C N    EAL ++G +   G  P+ + YNMLI  Y +LG+ D  F   
Sbjct: 365 NLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALK 424

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM++ G   DV TY  +I GL     +E A  L +++ +KGL
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL 467



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E ++    P +   N+L+D   K   +  +  + K + ++ VKPN  +YN L        
Sbjct: 286 EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGG 345

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                +   ++M+  G  P+  TYN  I+ FCK  M+ EA D+F  ++ +G+    PT +
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAV---PTTR 402

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y ++I A  +  ++++ F+L   M   G +PDV TY  ++ G+C  G +E A K  +++
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +KG P D+VT++  ++  C      +A  L   M ++G  P   TYN+++  Y + G  
Sbjct: 463 TSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521

Query: 394 DGAFETWHEMDK-RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             A     +M+K R    +V +Y V++ G     K+E+A  LL E++ KGL +P R
Sbjct: 522 KAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL-VPNR 576



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 98/191 (51%), Gaps = 3/191 (1%)

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           FE  +  G      +A +   +++AL++ +R  +   +   MI     P+V T+  V+  
Sbjct: 173 FEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINA 232

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD-NKNGD--EALRLYGRMIEVGC 373
           +C  GK+ +A   +E+M   G  P++V+YN  +   C    NG   +A  +   M+E   
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDV 292

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P++ T+N+LI  +++     G+ + + EM  +    +V +Y  +I+GL +  K+ EA  
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAIS 352

Query: 434 LLEEVVNKGLK 444
           + +++V+ G++
Sbjct: 353 MRDKMVSAGVQ 363



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 83/226 (36%), Gaps = 53/226 (23%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           +    QP +   N L++  CK  ++  A  +   VK +   P    YN+L          
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKI 417

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G    EEM + G  PD  TYN  I   C+   +  A  LF+ + +KG     P   T+
Sbjct: 418 DDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL----PDLVTF 473

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLP------------------------------ 305
            I++    +     +   LL  M   G  P                              
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533

Query: 306 ------DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
                 +V++Y  +L+G    GK+E+A   L EM  KG  P+ +TY
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           + E  ++  +  G  GY    ++    +  L       +   +Y  MI     P+V T+N
Sbjct: 168 RFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFN 227

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG---LFDCSKVEEACFLLEEV 438
           ++I+   + G+ + A +   +M   GC+ +V +Y  +IDG   L    K+ +A  +L+E+
Sbjct: 228 VVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM 287

Query: 439 V 439
           V
Sbjct: 288 V 288


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 148/336 (44%), Gaps = 52/336 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N+L+   CK G +D A  + +R+   V P+  TYN +             M+ L
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERMS--VAPDVVTYNTILRSLCDSGKLKEAMEVL 231

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +  +Q    PD  TY   I+  C    V +A  L + MR KG     P   TY ++I  +
Sbjct: 232 DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGC---KPDVVTYNVLINGI 288

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R++E    L +M + GC P+V T+  +L  MC  G+  +A + L +M  KG  P +
Sbjct: 289 CKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSV 348

Query: 343 VTYNCFLKVLC-----------------------------------DNKNGDEALRLYGR 367
           VT+N  +  LC                                     K  D A+     
Sbjct: 349 VTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEI 408

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+  GC+P + TYN L++   + G+ D A E  +++  +GC+  + TY  +IDGL    K
Sbjct: 409 MVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 468

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            E A  LLEE+  KGLK     + + L  L   G +
Sbjct: 469 TEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKV 504



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 45/333 (13%)

Query: 170 KVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL----------- 217
           ++   P++   N +L +LC  G L +  E + ++++ +  P+  TY IL           
Sbjct: 201 RMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVG 260

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-------- 268
             M+ L+EM + G  PD  TYN  I+  CK   + EA      M + G   +        
Sbjct: 261 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIIL 320

Query: 269 ------------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                   SP+  T+ I+I  L +   +     +L  M   GC+
Sbjct: 321 RSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCV 380

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P+  +Y  +L G C   K++ A ++LE M ++G  PDIVTYN  L  LC +   D A+ +
Sbjct: 381 PNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEI 440

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
             ++   GC P + TYN +I    ++G+ + A E   EM ++G   D+ TY  ++ GL  
Sbjct: 441 LNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGR 500

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             KV+EA  +  ++    +K     +++ ++ L
Sbjct: 501 EGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 533



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   N++L ++C  G  +D    +   ++    P+  T+NIL             + 
Sbjct: 310 KPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAID 369

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M + G  P++ +YN  +  FC+ + +  A +  E M ++G     P   TY  ++ 
Sbjct: 370 VLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCY---PDIVTYNTLLT 426

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ +++    +L  + + GC P + TY  V++G+   GK E A + LEEM  KG  P
Sbjct: 427 ALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKP 486

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  L+ L      DEA++++  M  +   PS  TYN ++    +  +   A +  
Sbjct: 487 DIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFL 546

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFD 424
             M ++GC     TY ++I+G+ D
Sbjct: 547 AYMVEKGCKPTEATYTILIEGIAD 570



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 137/296 (46%), Gaps = 16/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           +K   E  K   +P++   N+L++ +CK G +D A      + +   KPN  T+NI+   
Sbjct: 263 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRS 322

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + L +M++ G +P   T+N  I+  C+ R++  A D+ E M   G    
Sbjct: 323 MCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCV-- 380

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P + +Y  ++    Q  +M+     L  M++ GC PD+ TY  +L  +C  GKV+ A +
Sbjct: 381 -PNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVE 439

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L ++ +KG  P ++TYN  +  L      + A+ L   M   G  P + TY+ L+    
Sbjct: 440 ILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLG 499

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             G+ D A + +H+M+         TY  ++ GL    +   A   L  +V KG K
Sbjct: 500 REGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCK 555



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 209 PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           PN +  N++GM++    +    + + F  N  +    +   + E     E M  +G    
Sbjct: 82  PNGD-LNVIGMESSPIGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDI-- 138

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P       +I    ++ + ++   ++  + NSG +PDV TY  ++ G C +G++++A +
Sbjct: 139 -PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALE 197

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            LE M      PD+VTYN  L+ LCD+    EA+ +  R ++  C+P V TY +LI    
Sbjct: 198 VLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATC 254

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                  A +   EM K+GC  DV TY V+I+G+    +++EA   L  + + G K    
Sbjct: 255 NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVI 314

Query: 449 KFDSYLMQLSVIGD-LGAIHKLSDHMRKFYNPVI 481
             +  L  +   G  + A   LSD +RK  +P +
Sbjct: 315 THNIILRSMCSTGRWMDAERLLSDMLRKGCSPSV 348



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 19/138 (13%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           VD  + IL Q + K      P +   N ++D L K G  +YA  + + ++ K +KP+  T
Sbjct: 434 VDAAVEILNQLSSK---GCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIIT 490

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L             ++   +M  +   P   TYN  +   CKA+  + A D   +M 
Sbjct: 491 YSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMV 550

Query: 262 TKGSTISSPTAKTYAIMI 279
            KG     PT  TY I+I
Sbjct: 551 EKGC---KPTEATYTILI 565


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 183/414 (44%), Gaps = 36/414 (8%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
           GV     F + +AF  F W+   D +   P  YN M+D+      K +QF L   ++D M
Sbjct: 151 GVRHGIPFLQSLAF--FNWSSSLDGFPASPEPYNEMLDLAG----KLRQFDLAWHVIDLM 204

Query: 146 KRNNKVFVPVDVLLMILKQY------TEKIKVKTQ-------PEINALNLLLDALCKCGL 192
           K +  V + V     ++++Y       E +    +       P++ A ++++ +LCK   
Sbjct: 205 K-SRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRR 263

Query: 193 VDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
            + A++    +K++ +P+   Y  L              +   +M   G  P+ +TY+  
Sbjct: 264 ANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIV 323

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ID+ C+   +T A D+F  M   G     P A T+  ++   V+  R E+   +   M  
Sbjct: 324 IDSLCRCGQITRAHDVFSEMIDAGC---DPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKR 380

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GC  D  +Y  ++E  C    +EEA K L  M  KG  P+  T+N     +    + + 
Sbjct: 381 LGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNG 440

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A R+Y RM E+ C P+  TYN+L+ M+ E    D   +   EMD+     +V+TY ++I 
Sbjct: 441 AHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILIS 500

Query: 421 GLFDCSKVEEACFLLEEVV-NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              D      A  L+ E+V  K L+     +++ L  L   G L    +L D M
Sbjct: 501 MFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKM 554



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC---F 292
           T++  +  + +A +  EA   F  M   G T   P    ++I+I +L +  R  E    F
Sbjct: 215 TFSALVRRYVRAGLAAEAVHAFNRMEDYGCT---PDMVAFSIVISSLCKKRRANEAQSFF 271

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
             L H       PDV  Y  ++ G C AG + +A +   +M   G  P++ TY+  +  L
Sbjct: 272 DSLKHRFE----PDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSL 327

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C       A  ++  MI+ GC P+  T+N L+ ++ + G  +   + +++M + GC  D 
Sbjct: 328 CRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADT 387

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            +Y  +I+       +EEA  +L  +V KG+      F+     ++ + D+   H++   
Sbjct: 388 ISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYAR 447

Query: 473 MRKF 476
           M++ 
Sbjct: 448 MKEL 451



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 292 FSLLGHMIN----SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           F L  H+I+     G    V T+  ++     AG   EA      M + G  PD+V ++ 
Sbjct: 194 FDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSI 253

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC  +  +EA   +  + +    P V  Y  L+  +   G+   A E + +M   G
Sbjct: 254 VISSLCKKRRANEAQSFFDSL-KHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAG 312

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV-IGDLGAI 466
              +V TY ++ID L  C ++  A  +  E+++ G       F+S LM++ V  G    +
Sbjct: 313 IKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNS-LMRVHVKAGRTEKV 371

Query: 467 HKLSDHMRKFYNPV 480
            K+ + M++   P 
Sbjct: 372 LKVYNQMKRLGCPA 385



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 90/193 (46%), Gaps = 19/193 (9%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYNIL-- 217
           +LK Y +  ++    +  + N ++++ C+   L + A+ +   VK  V PNA+T+N +  
Sbjct: 371 VLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFG 430

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK-GST 266
                       +    M ++   P+  TYN  +  F ++R    + D+   M+ +   +
Sbjct: 431 CIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESR----STDMVLKMKKEMDES 486

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEE 325
              P   TY I+I            + L+  M+   CL P++S Y+ VLE +  AG++++
Sbjct: 487 QVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKK 546

Query: 326 AYKFLEEMGNKGY 338
             + +++M  +G+
Sbjct: 547 HEELVDKMVARGF 559


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 185/401 (46%), Gaps = 38/401 (9%)

Query: 76  GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQF 135
            + L+ D V  +LQRF+ + K A   F WA     + H P  Y+++ID L  T    KQ 
Sbjct: 68  SIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKT----KQL 123

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMILK------QYTEKIKV-------KTQPEINALNL 182
             +  ML+ MK      V +D +   ++      Q+   +++         +    ++N+
Sbjct: 124 VKMRGMLEEMKEAR--LVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNV 181

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230
           LLD LCK   V+ A  +   +K+ + PNANT+N+                TLEEM   GH
Sbjct: 182 LLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGH 241

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            P   +Y+T I  +C      +  +L + M  +G         TY  ++ +L +++  EE
Sbjct: 242 RPCVISYSTIILFYCHRCNFNKVYELLDEMDAQG---CPANVITYTTIMCSLTKSEEFEE 298

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE-EMGNKGYPPDIVTYNCFL 349
              +   M ++G  PD   Y  ++  +  AGKV EA    E EM +K   P+  TYN  +
Sbjct: 299 ALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMI 358

Query: 350 KVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETWHE--MDKR 406
            + C     ++A++L   M +   C P VQTY  L+   F  G+ D       +  ++K 
Sbjct: 359 AMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKH 418

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
             + D+ TY ++I GL   +K + A  L E+++++ +K  Y
Sbjct: 419 HLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRY 459


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 165/371 (44%), Gaps = 46/371 (12%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E  ++K +  +   N++++ LCK G +  A+     ++N  VKPN  TYN +      
Sbjct: 224 YAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCS 283

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR---------- 261
                     L+ M   G  PD++TY + I   CK   + EA+ + E M+          
Sbjct: 284 RGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVT 343

Query: 262 ---------TKGSTISS-------------PTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
                     KG  + +             PT  TY ++I AL    +M+E   ++  M 
Sbjct: 344 YNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMG 403

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
           +SG +PD  TY  ++ G C  G  ++A+   +EM +KG  P +VTY   + VL       
Sbjct: 404 DSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMK 463

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A  L+ ++I  G  P +  +N LI  +   G  D AF    EMDKR    D  TY  ++
Sbjct: 464 AADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLM 523

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF-YN 478
            G     KVEEA  LL+E+  +G++  +  +++ +   S  GD+     + D M    +N
Sbjct: 524 QGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFN 583

Query: 479 PVIARRLALNQ 489
           P +    AL Q
Sbjct: 584 PTLLTYNALIQ 594



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 25/295 (8%)

Query: 167 EKIK-VKTQPEINALNLLLDALCKCGLVDYAETICKR---VKNKVKPNANTYNIL----- 217
           EK+K +   P     N L+D  C  G  D  +    R   V+  + P  +TYN+L     
Sbjct: 330 EKMKEIGLLPTAVTYNTLIDGYCNKG--DLVKAFGYRDEMVRRAILPTVSTYNLLIHALF 387

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    GM  +++M   G  PD+ TYN  I+ +C+     +A +L + M +KG    
Sbjct: 388 LEGKMDEADGM--IKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGI--- 442

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            PT  TY  +I  L + +RM+    L   +I  G  PD+  +  +++G C  G ++ A+ 
Sbjct: 443 QPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFA 502

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L+EM  +   PD VTYN  ++  C     +EA  L   M   G  P   +YN LIS Y 
Sbjct: 503 LLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYS 562

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + G+ + AF    EM   G    + TY  +I GL    + + A  LL+E+V+KG+
Sbjct: 563 KRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI 617



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 130/278 (46%), Gaps = 16/278 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E ++    P ++  NLL+ AL   G +D A+ + K + +  + P++ TYNIL        
Sbjct: 366 EMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCG 425

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                    +EMI  G  P   TY + I    K   +  A DLFE +  +G+   SP   
Sbjct: 426 NAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA---SPDLI 482

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  +I     N  ++  F+LL  M     +PD  TY  +++G C  GKVEEA + L+EM
Sbjct: 483 MFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEM 542

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PD ++YN  +       + ++A  +   M+ +G  P++ TYN LI    +  + 
Sbjct: 543 KRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQG 602

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           D A E   EM  +G   D  TY  +I+G+       EA
Sbjct: 603 DLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALV 283
           M + G  P   T+N  +  F K         L+ E  R K   I S T  T+ IMI  L 
Sbjct: 192 MKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLK---IKS-TVYTFNIMINVLC 247

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  ++++    +G M N G  P+V TY  V+ G C  G+VE A   L+ M N+G  PD  
Sbjct: 248 KEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSY 307

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  +C     +EA  +  +M E+G  P+  TYN LI  Y   G+   AF    EM
Sbjct: 308 TYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEM 367

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +R     V TY ++I  LF   K++EA  +++++ + G+
Sbjct: 368 VRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGI 407



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 1/197 (0%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V    D+F  +      + + ++  + ++I A  +  R ++ F     M   G +P + T
Sbjct: 144 VAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIET 203

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           +  +L       + E  +    EM        + T+N  + VLC      +A    G M 
Sbjct: 204 FNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSME 263

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
            +G  P+V TYN +I  Y   G  +GA      M  RG   D  TY  +I G+    K+E
Sbjct: 264 NLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLE 323

Query: 430 EACFLLEEVVNKGLKLP 446
           EA  +LE++   GL LP
Sbjct: 324 EASGILEKMKEIGL-LP 339


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 164/360 (45%), Gaps = 32/360 (8%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ-YTEK------IKVKTQ-------PE 176
           +A Q R    ML+ M  ++    P +     L Q + E+      ++VKT+       P 
Sbjct: 207 RAHQVRTAVLMLEEM--SSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPT 264

Query: 177 INALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
              +N+L++  CK G V D    I K + +  +P+  TYN               ++ ++
Sbjct: 265 RVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMD 324

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M+Q GH PD FTYNT I+   K   + EA  +   M  +G     P   T+  +IVAL 
Sbjct: 325 LMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCL---PDTTTFNTLIVALC 381

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
             +R+EE   L   +   G  PDV T+  ++  +C  G      +  EEM + G  PD V
Sbjct: 382 SQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEV 441

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +  LC       AL L   M   GC  S  TYN +I    +    + A E + +M
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM 501

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           D  G ++   T+  +IDGL    ++++A  L+E++V +GL+     ++S L      GDL
Sbjct: 502 DAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 51/338 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK----------------------- 201
           Y E      QP++  LN L+ ALC+   V  A  + +                       
Sbjct: 183 YNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIE 242

Query: 202 --------RVKNKV-----KPNANTYNIL------------GMQTLEEMIQMGHAPDNFT 236
                   RVK K+      P   T N+L             +  +++ I  G  PD  T
Sbjct: 243 EGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVT 302

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YNT +   C+   V+ A  + + M  +G     P   TY  +I  L +N  ++E   ++ 
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEG---HDPDVFTYNTVINCLSKNGELDEAKGIVN 359

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M++ GCLPD +T+  ++  +C   ++EEA     E+  KG  PD+ T+N  +  LC   
Sbjct: 360 QMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVG 419

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           +    +RL+  M   GC P   TYN+LI     +G+   A +   EM+  GC +   TY 
Sbjct: 420 DPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYN 479

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            +ID L    ++EEA  + +++   G+      F++ +
Sbjct: 480 TIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLI 517



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G  PD  T NT I   C+A  V  A  + E M    S   +P   T+  ++   +
Sbjct: 185 EMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM---SSHAVAPDETTFTTLMQGFI 241

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +E    +   M+ +GC P   T   ++ G C  G+VE+A  ++++    G+ PD V
Sbjct: 242 EEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQV 301

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN F+  LC N +   AL++   M++ G  P V TYN +I+   + GE D A    ++M
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 361

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
             RGC  D  T+  +I  L   +++EEA  L  E+  KGL      F+  +  L  +GD
Sbjct: 362 VDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGD 420



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 139/304 (45%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L++ALCK G       + + +K+    P+  TYNIL             +  
Sbjct: 403 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDL 462

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G      TYNT ID  CK   + EA ++F+ M   G    S +A T+  +I  
Sbjct: 463 LKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI---SRSAVTFNTLIDG 519

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+++   L+  M+  G  P   TY  +L   C  G +++A   LE M   G+  D
Sbjct: 520 LCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEID 579

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC       AL+L   M   G  P+ + YN +I   F       A   + 
Sbjct: 580 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFR 639

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++  GL      ++EA   L E+VNKG  +P  +F S+ M    +
Sbjct: 640 EMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGF-MP--EFSSFRMLAEGL 696

Query: 461 GDLG 464
            +LG
Sbjct: 697 LNLG 700



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 138/296 (46%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQM 228
           P++   N +++ L K G +D A+ I  + V     P+  T+N L         LEE + +
Sbjct: 333 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDL 392

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G +PD +T+N  I+  CK         LFE M++ G    +P   TY I+I  
Sbjct: 393 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGC---APDEVTYNILIDH 449

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++     LL  M ++GC     TY  +++ +C   ++EEA +  ++M   G    
Sbjct: 450 LCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRS 509

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N  +  LC  K  D+A  L  +M++ G  PS  TYN +++ Y + G+   A +   
Sbjct: 510 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILE 569

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   G   DV TY  +I+GL    + + A  LL  +  KG++   + ++  +  L
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 625



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 6/254 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST--ISSPTAKTYAIMI 279
           + EM + GH        + ++++ + R   +A DL   +R + +T  + + TA  Y  ++
Sbjct: 112 VREMRREGHEAGAGVVRSFVESYARLRRFDDAVDL---VRNQLNTFGVQADTA-VYNHLL 167

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +  RM+   S+   M + G  PDV T   +++ +C A +V  A   LEEM +    
Sbjct: 168 NVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVA 227

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD  T+   ++   +  + + ALR+  +M+E GC P+  T N+LI+ Y ++G  + A   
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY 287

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             +    G   D  TY   +  L     V  A  +++ ++ +G       +++ +  LS 
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 347

Query: 460 IGDLGAIHKLSDHM 473
            G+L     + + M
Sbjct: 348 NGELDEAKGIVNQM 361



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 100/244 (40%), Gaps = 4/244 (1%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           AP    Y   I     A        L   MR +G    +   +++   + +  +  R ++
Sbjct: 86  APSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSF---VESYARLRRFDD 142

Query: 291 CFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
              L+ + +N+ G   D + Y  +L  +    +++       EM ++G  PD+VT N  +
Sbjct: 143 AVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLI 202

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           K LC       A+ +   M      P   T+  L+  + E G  + A     +M + GC+
Sbjct: 203 KALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCS 262

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
               T  V+I+G     +VE+A   +++ +  G +     +++++  L   G +    K+
Sbjct: 263 PTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKV 322

Query: 470 SDHM 473
            D M
Sbjct: 323 MDLM 326


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------GM-----QT 221
           P   A   L+  LC     D A E      +    P+  TYN++       GM       
Sbjct: 43  PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDL 102

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++MI+ GH PD  TYNT +D  CK+  V EA  LF  M   G T   P  +++  +I+ 
Sbjct: 103 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCT---PNRRSHNTIILG 159

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q  ++++   +   M      PD  +Y  +++G+  AGK+ EAYK  + M + G  P 
Sbjct: 160 LCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPS 219

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +  +C     DEAL L+  M   GC PS  T+N+LI  + + G+ D AF    
Sbjct: 220 AVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLK 279

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            M   G   DV TY  +I GL   ++V++A  LLE++V +  K
Sbjct: 280 RMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 322



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 163/353 (46%), Gaps = 32/353 (9%)

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQ-------- 164
           P+ YN+MID       K       C ++  M  +  V   V  + ++  L +        
Sbjct: 80  PVTYNVMID----ASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEAL 135

Query: 165 --YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
             + E  ++   P   + N ++  LC+   +D A  +   ++ K + P++ +Y IL    
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGL 195

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     +  + M+  G  P   TYN  I   C A  + EA +LF+ MR+KG     
Sbjct: 196 AKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC---R 252

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+  T+ I+I A  +  +++E F LL  M + G +PDV TY  ++ G+C   +V++A   
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LE+M  +   P +VT N  +  LC      EA  +   M+  G  P V TYN L+  +  
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            G+ + A E   +M  RG A +V TY  ++ GL   +++ EAC +  ++ + G
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--GM---QTLEEMIQM 228
           P+  +  +L+D L K G ++ A  + +R + + + P+A TYN++  GM    TL+E +++
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G  P  FT+N  ID  CK   + EA  L + M   G     P   TY+ +I  
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV---PDVVTYSTLISG 299

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R+++   LL  M+   C P V T   ++ G+C AG+++EA + L+ M + G  PD
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +   C     + A  L   M+  G  P+V TY  L+S   +      A   + 
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFA 419

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M   GCA ++ TY  +I G     +V+    L  E+V  G+
Sbjct: 420 QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 461



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 181/420 (43%), Gaps = 52/420 (12%)

Query: 31  GKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDS----VVG 86
           G VP +V   ++   D +   +++ EA++     ++ ME+    LG      S    ++G
Sbjct: 110 GHVPDVV--TYNTVMDGLCKSSRVEEALL----LFNEMER----LGCTPNRRSHNTIILG 159

Query: 87  VLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK 146
           + Q+ + ++       M A    +   +  +Y ++ID L+      + ++L   MLD   
Sbjct: 160 LCQQSKIDQACQVFHEMEA---KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGI 216

Query: 147 RNNKVFVPVDVLLMILKQYT--------EKIKVKT-QPEINALNLLLDALCKCGLVDYAE 197
             + V   V +  M L  YT        + ++ K  +P     N+L+DA CK G +D A 
Sbjct: 217 TPSAVTYNVVIHGMCL-AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAF 275

Query: 198 TICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
            + KR                      M   GH PD  TY+T I   C    V +A  L 
Sbjct: 276 RLLKR----------------------MTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 313

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           E M  +      PT  T   +I  L +  R++E   +L  M++SG  PDV TY  ++ G 
Sbjct: 314 EDMVKR---QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C AG+ E A + L +M  +G  P++VTY   +  LC      EA  ++ +M   GC P++
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TY  LI  +   G+ DG  + + EM   G + D   Y  +   L    +   A  +L E
Sbjct: 431 FTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +PD+++Y   ID   KA  + +A +LF+ +   G T   P+   Y  +I  L   +  ++
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVT---PSTVAYTSLIHGLCMANSFDD 63

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              L   M   GC P   TY  +++  C  G +EEA   +++M   G+ PD+VTYN  + 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 123

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            LC +   +EAL L+  M  +GC P+ +++N +I    +  + D A + +HEM+ +    
Sbjct: 124 GLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPP 183

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D  +Y ++IDGL    K+ EA  L + +++ G+
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGI 216



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 136/329 (41%), Gaps = 57/329 (17%)

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           +  V P++ +Y IL                 ++++  G  P    Y + I   C A    
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A +LF  M  +G     P+  TY +MI A  +   +EE   L+  MI  G +PDV TY 
Sbjct: 63  DARELFADMNRRG---CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 312 EVLEGMCLAGKVEEAY-----------------------------------KFLEEMGNK 336
            V++G+C + +VEEA                                    +   EM  K
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAK 179

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
             PPD  +Y   +  L      +EA +L+ RM++ G  PS  TYN++I         D A
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFDS 452
            E +  M  +GC     T+ ++ID      K++EA  LL+ + + G  +P    Y    S
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDG-HVPDVVTYSTLIS 298

Query: 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481
            L  ++ + D  A H L D +++   P +
Sbjct: 299 GLCSIARVDD--ARHLLEDMVKRQCKPTV 325



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 18/179 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +     L+  LCK   +  A  +  ++K+    PN  TY  L            G++ 
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--AKTYAIMI 279
             EM+  G +PD+  Y T     CK+     +A   E +R    ++ S     + Y   +
Sbjct: 453 FGEMVCAGISPDHVVYGTLAAELCKS---GRSARALEILREGRESLRSEAWGDEVYRFAV 509

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             L++  +ME     +  M+  G LP       ++ G+C +G+  EA   LEE+ +  Y
Sbjct: 510 DGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAY 568



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   PD  +Y   +  L      ++A  L+ +++  G  PS   Y  LI        
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            D A E + +M++RGC     TY VMID       +EEAC L+++++  G
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDG 110


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E +     P++   N L+   C  G + D  +   K +   + PN  T+NIL      
Sbjct: 235 YSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCK 294

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++ G  PD FTYN+ +D +C  + V +A  +F  +  +G    +P 
Sbjct: 295 ERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGV---NPN 351

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y+IMI    +  +++E  +L   M  +  +PDV TY  +++G+C  GK+  A K ++
Sbjct: 352 IHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVD 411

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G P D +TYN  L  LC N   D+A+ L  +M + G  P + TY  L+    + G
Sbjct: 412 EMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNG 471

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             + A   + ++  +G   DV+ Y  MI G       +E+  LL ++   G
Sbjct: 472 RLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENG 522



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 130/275 (47%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G    A  + +RV  K V+PN   YN +                  EM+  G
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 242

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +PD  TYN  I  FC    + +A DLF  M  +     +P   T+ I++    +  R++
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENI---NPNVYTFNILVDGFCKERRLK 299

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  ++L  M+  G  PDV TY  +++  CL  +V +A      +  +G  P+I +Y+  +
Sbjct: 300 EAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMI 359

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  DEA+ L+  M      P V TYN LI    +LG+   A +   EM  RG  
Sbjct: 360 HGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVP 419

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D  TY  ++D L    +V++A  LL ++ ++G++
Sbjct: 420 HDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 454



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 25/266 (9%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY 214
           +VL M++KQ         +P++   N L+D  C    V+ A+ I   +  + V PN ++Y
Sbjct: 303 NVLAMMMKQ-------GIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSY 355

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           +I+             M   +EM      PD  TYN+ ID  CK   ++ A  L + M  
Sbjct: 356 SIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHD 415

Query: 263 KGSTISSPTAK-TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           +G     P  K TY  ++ AL +N ++++  +LL  M + G  PD+ TY  +++G+C  G
Sbjct: 416 RGV----PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNG 471

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++E+A    E++  KGY  D+  Y   ++  C +   DE+L L  +M E GC P+  TY 
Sbjct: 472 RLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYE 531

Query: 382 MLISMYFELGEPDGAFETWHEMDKRG 407
           ++I   F+  E D A +   EM  RG
Sbjct: 532 IIICSLFDKDENDKAEKLLREMITRG 557



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 135/306 (44%), Gaps = 25/306 (8%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
           +K+  +P +  L  L+  LC  G +  A                      +Q  ++++ +
Sbjct: 134 LKMGYEPNVITLTTLIKGLCLKGQIHQA----------------------LQFHDKVVAL 171

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G   +  +Y T I+  CK   V + +   + +R     +  P    Y  +I ++ +   +
Sbjct: 172 GFHLNKVSYGTLINGLCK---VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLV 228

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E F L   M++ G  PDV TY  ++ G C+ GK+++A     +M  +   P++ T+N  
Sbjct: 229 NEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNIL 288

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C  +   EA  +   M++ G  P V TYN L+  Y  + E + A   ++ + +RG 
Sbjct: 289 VDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGV 348

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             ++ +Y +MI G     KV+EA  L +E+    +      ++S +  L  +G +    K
Sbjct: 349 NPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALK 408

Query: 469 LSDHMR 474
           L D M 
Sbjct: 409 LVDEMH 414



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 122/291 (41%), Gaps = 39/291 (13%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q    P  F +   + +  K+   +    L   M   G T         +I+I    Q  
Sbjct: 65  QKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGIT---SDLVILSILINCFSQLG 121

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF----------------- 329
           +    FS+L  ++  G  P+V T   +++G+CL G++ +A +F                 
Sbjct: 122 QNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYG 181

Query: 330 ------------------LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
                             L  +  K   P++V YN  +  +C  K  +EA  LY  M+  
Sbjct: 182 TLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK 241

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P V TYN LIS +  +G+   A + +++M       +V T+ +++DG     +++EA
Sbjct: 242 GISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEA 301

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVI 481
             +L  ++ +G+K     ++S + +  ++ ++  A H  +   ++  NP I
Sbjct: 302 KNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNI 352


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 183/397 (46%), Gaps = 30/397 (7%)

Query: 76  GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY----- 130
            + L+ D V  +LQRF+ + K A   F WA     + H P  Y+++ID L  TK      
Sbjct: 99  SIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMR 158

Query: 131 ----KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
               + K+ RLV   LD + +  + F         ++ + +      +    ++N+LLD 
Sbjct: 159 GMLEEMKEARLV--TLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLDT 216

Query: 187 LCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDN 234
           LCK   V+ A  +   +K+ + PNANT+N+                TLEEM   GH P  
Sbjct: 217 LCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCV 276

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            +Y+T I  +C      +  +L + M  +G         TY  ++ +L +++  EE   +
Sbjct: 277 ISYSTIILFYCHRCNFNKVYELLDEMDAQG---CPANVITYTTIMCSLTKSEEFEEALQI 333

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE-EMGNKGYPPDIVTYNCFLKVLC 353
              M ++G  PD   Y  ++  +  AGKV EA    E EM +K   P+  TYN  + + C
Sbjct: 334 AERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYC 393

Query: 354 DNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETWHE--MDKRGCAQ 410
                ++A++L   M +   C P VQTY  L+   F  G+ D       +  ++K   + 
Sbjct: 394 RRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKHHLSL 453

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           D+ TY ++I GL   +K + A  L E+++++ +K  Y
Sbjct: 454 DISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRY 490



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 14/277 (5%)

Query: 168 KIKVKTQPEINALNLLLDALCKCGLV--DYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           K++V +  +    +LL D +C    +  D    + +R K+  K     +     +  E +
Sbjct: 77  KVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVF-----RWAESL 131

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
               H PD   Y+  IDT  K + + +   + E M+         T  T A  +      
Sbjct: 132 SGFKHTPD--LYDILIDTLGKTKQLVKMRGMLEEMKEARLV----TLDTVAKAMRRFAGA 185

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            + E    +   +   G   +  +   +L+ +C   KVE+A +   E+ +    P+  T+
Sbjct: 186 GQWENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSH-IAPNANTF 244

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N F+   C     DEA      M   G  P V +Y+ +I  Y      +  +E   EMD 
Sbjct: 245 NMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDA 304

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +GC  +V TY  ++  L    + EEA  + E + + G
Sbjct: 305 QGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAG 341


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E ++V   P I   N L+  LC+ GL +   E + +  ++   P+   Y  +        
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  P+   YNT +   C A    EA +L   M  K   +      
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD---V 357

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M++ GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            + G  P+ V+Y   LK LC      +A  L  +MI+ GC P+  T+N LI+   + G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K EEA  LL  +VNKG+      + S 
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS 574



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 25/264 (9%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           NL+L+A+C+ G VD A                      +  L ++   G   D  +YN  
Sbjct: 185 NLVLNAICEQGCVDEA----------------------VGLLRKLAFFGCEADIVSYNAV 222

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +   C A+      D+ E M        +P   T+  +I  L +N   E    +L  M  
Sbjct: 223 LKGLCMAK---RWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GC PD+  Y  +++G+C  G +E A + L  M + G  P++V YN  LK LC  +   E
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L   M +  C     T+N+L+  + + G  D   E   +M   GC  DV TY  +I+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           G      ++EA  LL+ + + G K
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCK 423



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 54/295 (18%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            N+L+D  C+ GLVD       RV               ++ LE+M+  G  PD  TY T
Sbjct: 359 FNILVDFFCQNGLVD-------RV---------------IELLEQMLSHGCMPDVITYTT 396

Query: 240 AIDTFCKARMVTEAADLFEFMRTKG---STIS---------------------------- 268
            I+ FCK  ++ EA  L + M + G   +T+S                            
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 269 -SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  +I  L +   +E+   LL  M+ +GC PD+ +Y  V++G+  AGK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L  M NKG  P+ + Y+     L      ++ ++++  + +         YN +IS  
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +  E D A + +  M   GC  +  TY ++I GL      +EA  LL E+ ++G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 11/217 (5%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ +T+   +   C    + +A ++ + M  KG    +P    Y +++ A  ++      
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGC---APIPPMYHVILEAACRSGGFRNS 165

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +L  M   GC  D      VL  +C  G V+EA   L ++   G   DIV+YN  LK 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE----MDKRG 407
           LC  K   +   L   M+ V C P++ T+N LI         +G FE  HE    M + G
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR----NGLFERVHEVLAQMSEHG 281

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           C  D+  Y  +IDG+     +E A  +L  + + GLK
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 3/234 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L+EM   G AP    Y+  ++  C++     +  + E M  KG T+ +       +
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN---L 186

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ A+ +   ++E   LL  +   GC  D+ +Y  VL+G+C+A +  +  + ++EM    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+IVT+N  +  LC N   +    +  +M E GC P ++ Y  +I    + G  + A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           E  + M   G   +V  Y  ++ GL    + +EA  LL E+  K   L    F+
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           ++ I+    P     N L++ LCK GLV+ A                      ++ L++M
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQA----------------------IELLKQM 487

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G +PD  +Y+T ID   KA    EA +L   M  KG    SP    Y+ +  AL + 
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG---ISPNTIIYSSIACALSRE 544

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R+ +   +  ++ ++    D   Y  V+  +C   + + A  F   M + G  P+  TY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVG 372
              +K L       EA  L   +   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  Y  ++ G C AG++  A +    +     PP+  T+   ++ LC      +AL +  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M   GC P    Y++++      G    +      M  +GC  D     ++++ + +  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            V+EA  LL ++   G +     +++ L  L +    G + +L D M +
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244


>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
 gi|194690592|gb|ACF79380.1| unknown [Zea mays]
 gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 193/433 (44%), Gaps = 36/433 (8%)

Query: 38  CKVFDESSDSVSDVAKLYEAIIDNSNAYDN--MEKALDSLGVPLTTDSVVGVLQRFQFEE 95
           C      S+ + DV       +  S + DN  +  AL    V +  D ++ VLQ+ +   
Sbjct: 65  CHTTAGMSECLPDVYASQVLKVLKSTSADNTDLSGALHQFAVHMDEDIILMVLQKQRSNW 124

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           ++A  FF WA     YAH   AY  M+DIL   K K +  R +   +   +R  +V V  
Sbjct: 125 QVALAFFNWAATLPGYAHGSRAYTEMLDILGRMK-KVRHMRQLFDEIPEERR--QVVVTN 181

Query: 156 DVLLMILKQYTEKIKVKTQPEINAL-------------NLLLDALCKCGLVDYAETICKR 202
            +  ++L +Y    KV+   E+  L              +LL +LC+   V+ AE + + 
Sbjct: 182 KMFAVLLNRYAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFRE 241

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
            K++      ++NI+              +   ++I      D FT+ T I+   K   +
Sbjct: 242 KKDEFPHVTKSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRI 301

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
           + A  LF+ M  KG    +P       +I  L    ++ E   + G M +  C  DV+TY
Sbjct: 302 SAAVKLFKQMWEKGI---NPDVAICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATY 358

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++ MC   ++E+ Y+ L++M  KG PP+  TY+  LK     +   + + L  RM  
Sbjct: 359 NTLIKYMCKIKRMEKVYELLDDMEAKGCPPNNRTYSYILKT---TEKPKDVIALMQRMER 415

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC      YN+++++Y +     G  + W EM++RG   D  ++ +M+ GL    K++E
Sbjct: 416 TGCKLDSDIYNLILNLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDE 475

Query: 431 ACFLLEEVVNKGL 443
           A      + ++G+
Sbjct: 476 ALQYYTTMKSRGM 488


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 33/334 (9%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKV--FVPVDVLLMILKQYTEKI 169
           YN++I+ L   K  +  ++L   M+      D +  N+ +  F  V  L      + E +
Sbjct: 202 YNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMV 261

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
                P++   ++L+DALCK G +        R KN                L  M++ G
Sbjct: 262 LKNINPDVYTFSILVDALCKDGNI-------TRAKN---------------MLAVMMKQG 299

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TY++ +D +C    V +A  +F  M   G    +P A +Y IMI  L +   ++
Sbjct: 300 VIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGV---APHAHSYNIMINGLGKIKMVD 356

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  SL   M   G  PD  TY  +++G+C  G++  A++ ++EM N G P DI+TYN  +
Sbjct: 357 EALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLI 416

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
            VLC N + D+A+ L  ++ + G  PS+ TYN+LI    + G    A + + ++  +G +
Sbjct: 417 DVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYS 476

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +  TY +MI+GL       EA  LL ++ N G+
Sbjct: 477 VNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGI 510



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 149/331 (45%), Gaps = 23/331 (6%)

Query: 164 QYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYN 215
            YT  I +  Q       P I   N+L++  C  G + +A +I  K +K    P   T+N
Sbjct: 74  HYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFN 133

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +   + +I +G   D  +Y T I+  CK      A  + +  + +
Sbjct: 134 TLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLK--KIE 191

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G  +++     Y I+I +L ++  + + + L   MI     PDV T+  ++ G C+ G++
Sbjct: 192 GKLVNTDVV-MYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQL 250

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +EA+    EM  K   PD+ T++  +  LC + N   A  +   M++ G  P V TY+ L
Sbjct: 251 KEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSL 310

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  Y  + E + A   +  M + G A    +Y +MI+GL     V+EA  L +E+  KG+
Sbjct: 311 MDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGI 370

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
                 ++S +  L  +G +    +L D M 
Sbjct: 371 APDTVTYNSLIDGLCKLGRISYAWQLVDEMH 401



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 130/275 (47%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G    A  + K+++ K V  +   YNI+              Q   EMI   
Sbjct: 170 LINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKR 229

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +PD  T+N+ I  FC    + EA  LF  M  K     +P   T++I++ AL ++  + 
Sbjct: 230 ISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNI---NPDVYTFSILVDALCKDGNIT 286

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
              ++L  M+  G +PDV TY  +++G CL  +V +A      M   G  P   +YN  +
Sbjct: 287 RAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMI 346

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             L   K  DEAL L+  M   G  P   TYN LI    +LG    A++   EM   G  
Sbjct: 347 NGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIP 406

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D+ TY  +ID L     +++A  L++++ ++G++
Sbjct: 407 ADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQ 441



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 18/241 (7%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           ++F  N  + +F +   +     + EF +  GS + +               N+      
Sbjct: 34  NDFDVNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKA--------------NNNHYTTAI 79

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           SL   +   G  P + T+  ++   C  G++  A+    ++   GY P  +T+N  +  +
Sbjct: 80  SLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGI 139

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C N    EAL  +  +I +G      +Y  LI+   ++GE   A +   +++ +    DV
Sbjct: 140 CLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDV 199

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL----GAIHK 468
             Y ++I+ L     V +A  L  E++ K +      F+S ++   V+G L    G  H+
Sbjct: 200 VMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHE 259

Query: 469 L 469
           +
Sbjct: 260 M 260


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 194/434 (44%), Gaps = 38/434 (8%)

Query: 38  CKVFDESSDSVSDVAKLYEAIIDNSNAYDN--MEKALDSLGVPLTTDSVVGVLQRFQFEE 95
           C      SD ++DV       +  S + DN  +  AL    V +  D ++ VLQ+ +   
Sbjct: 73  CHATAGMSDHLTDVYASEVLKVLKSTSADNADLSDALRRFAVHMDEDIILTVLQKQRSNW 132

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           ++A  FF WA     YAH   AY  M+DIL     + K+ R +  + D +    +V V  
Sbjct: 133 QVALAFFNWAATLPGYAHGSRAYTEMLDILG----RMKKVRHMRQLFDEIPEERRVVVVT 188

Query: 156 DVLL-MILKQYTEKIKVKTQPEINAL-------------NLLLDALCKCGLVDYAETICK 201
           + +  ++L +Y    KV+   E+  L              +LL +LC+   V+ AE + +
Sbjct: 189 NKMFAVLLNRYAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFR 248

Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
             K++      ++NI+              +   ++I      D FTY T I+   K   
Sbjct: 249 EKKDEFPHVTKSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTYGTFINALAKNGR 308

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           ++ A  LF+ M   G    +P       +I  L   +R+ E   + G M +  C  DV+T
Sbjct: 309 ISAAVKLFKKMWETGI---NPDVAICNCIIDQLCFKNRIPEALEIFGEMNDRLCQADVAT 365

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +++ +C   ++E+ Y+ L++M  KG  P+  TY+  LK     +   + + L  RM 
Sbjct: 366 YNTLIKYLCKKKRMEKVYELLDDMEAKGCSPNNRTYSYVLKT---TEKPKDVIALMQRME 422

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           + GC     TYN+++++Y       G  + W EM++ G   D  ++ +M+ GL    K++
Sbjct: 423 QTGCELDSDTYNLILNLYTNWKYEKGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGKLD 482

Query: 430 EACFLLEEVVNKGL 443
           EA      + ++G+
Sbjct: 483 EALQYYTTMKSRGM 496



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           N  +   ++ +  A  V EA ++F   +  G  +       + I++++L +   +EE  +
Sbjct: 189 NKMFAVLLNRYAGAHKVQEAIEVFYLRKDYGFELD---LVGFQILLMSLCRYKHVEEAEA 245

Query: 294 LLGHMINSGCLPDVS-TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           L     +    P V+ ++  +L G C+ G + +A +   ++       D+ TY  F+  L
Sbjct: 246 LFREKKDE--FPHVTKSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTYGTFINAL 303

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-SMYFELGEPDGAFETWHEMDKRGCAQD 411
             N     A++L+ +M E G  P V   N +I  + F+   P+ A E + EM+ R C  D
Sbjct: 304 AKNGRISAAVKLFKKMWETGINPDVAICNCIIDQLCFKNRIPE-ALEIFGEMNDRLCQAD 362

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           V TY  +I  L    ++E+   LL+++  KG   P  +  SY+++ +
Sbjct: 363 VATYNTLIKYLCKKKRMEKVYELLDDMEAKGCS-PNNRTYSYVLKTT 408


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E ++V   P I   N L+  LC+ GL +   E + +  ++   P+   Y  +        
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  P+   YNT +   C A    EA +L   M  K   +      
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD---V 357

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M++ GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            + G  P+ V+Y   LK LC      +A  L  +MI+ GC P+  T+N LI+   + G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K EEA  LL  +VNKG+      + S 
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS 574



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 117/264 (44%), Gaps = 25/264 (9%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           NL+L+A+C+ G VD A                    +G+  L ++   G   D  +YN  
Sbjct: 185 NLVLNAICEQGCVDEA--------------------VGL--LRKLAFFGCEADIVSYNAV 222

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +   C A+      D+ E M        +P   T+  +I  L +N   E    +L  M  
Sbjct: 223 LKGLCMAK---RWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GC PD+  Y  +++G+C  G +E A + L  M + G  P++V YN  LK LC  +   E
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L   M +  C     T+N+L+  + + G  D   E   +M   GC  DV TY  +I+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           G      ++EA  LL+ + + G K
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCK 423



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 54/295 (18%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            N+L+D  C+ GLVD       RV               ++ LE+M+  G  PD  TY T
Sbjct: 359 FNILVDFFCQNGLVD-------RV---------------IELLEQMLSHGCMPDVITYTT 396

Query: 240 AIDTFCKARMVTEAADLFEFMRTKG---STIS---------------------------- 268
            I+ FCK  ++ EA  L + M + G   +T+S                            
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 269 -SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  +I  L +   +E+   LL  M+ +GC PD+ +Y  V++G+  AGK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L  M NKG  P+ + Y+     L      ++ ++++  + +         YN +IS  
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +  E D A + +  M   GC  +  TY ++I GL      +EA  LL E+ ++G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 11/217 (5%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ +T+   +   C    + +A ++ + M  KG    +P    Y +++ A  ++      
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGC---APIPPMYHVILEAACRSGGFRNS 165

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +L  M   GC  D      VL  +C  G V+EA   L ++   G   DIV+YN  LK 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE----MDKRG 407
           LC  K   +   L   M+ V C P++ T+N LI         +G FE  HE    M + G
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR----NGLFERVHEVLAQMSEHG 281

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           C  D+  Y  +IDG+     +E A  +L  + + GLK
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 3/234 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L+EM   G AP    Y+  ++  C++     +  + E M  KG T+ +       +
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN---L 186

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ A+ +   ++E   LL  +   GC  D+ +Y  VL+G+C+A +  +  + ++EM    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+IVT+N  +  LC N   +    +  +M E GC P ++ Y  +I    + G  + A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           E  + M   G   +V  Y  ++ GL    + +EA  LL E+  K   L    F+
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           ++ I+    P     N L++ LCK GLV+ A                      ++ L++M
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQA----------------------IELLKQM 487

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G +PD  +Y+T ID   KA    EA +L   M  KG    SP    Y+ +  AL + 
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG---ISPNTIIYSSIACALSRE 544

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R+ +   +  ++ ++    D   Y  V+  +C   + + A  F   M + G  P+  TY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVG 372
              +K L       EA  L   +   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  Y  ++ G C AG++  A +    +     PP+  T+   ++ LC      +AL +  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M   GC P    Y++++      G    +      M  +GC  D     ++++ + +  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            V+EA  LL ++   G +     +++ L  L +    G + +L D M +
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 176/390 (45%), Gaps = 46/390 (11%)

Query: 69  EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
           EKAL+ L + +    V  +L +   E  +  +FF WAG + N+ H+   Y  +I  L   
Sbjct: 73  EKALEVLKLKVDPRLVREIL-KIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIRCLD-- 129

Query: 129 KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
             + + F  V   +  M + +    P +                       L+ ++  L 
Sbjct: 130 --EHRMFGEVWKTIQDMVKGSCAMAPAE-----------------------LSEIVRILG 164

Query: 189 KCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMGHA-PDN 234
           K  +V+ A ++  +VK  K +P A+TYN + +  ++E            M    H  PD 
Sbjct: 165 KAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDT 224

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY+  I  F K      A  LF+ M+  G     PTAK Y  ++    +  ++EE   L
Sbjct: 225 VTYSALISAFAKLNRDDSAIRLFDEMKENGL---QPTAKIYTTLMGIYFKVGKVEEALGL 281

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           +  M    CL  V TY E++ G+  +G+VE+AY   + M   G  PD+V  N  + +L  
Sbjct: 282 VKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGR 341

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRGCAQDVD 413
           + +  +A++L+  M  + C P+V TYN +I   FE   P     +W E M K G      
Sbjct: 342 SNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSF 401

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 402 TYSILIDGYCKTNRVEKALLLLEEMDEKGF 431



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 142/329 (43%), Gaps = 52/329 (15%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNA----NTYNILG--------MQTLEEMIQMG 229
           L+  L K G V+ A    K  +K+  KP+     N  NILG        ++  +EM  + 
Sbjct: 300 LIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLN 359

Query: 230 HAPDNFTYNTAIDTFCKARM-VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            AP+  TYNT I +  +A+  ++EA+  FE M+  G     P++ TY+I+I    + +R+
Sbjct: 360 CAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIV---PSSFTYSILIDGYCKTNRV 416

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLA---------------------------- 320
           E+   LL  M   G  P  + Y  ++  + +A                            
Sbjct: 417 EKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVM 476

Query: 321 -------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
                  G++ EA     EM   G  PD+  YN  +  +   +  DEA  L+  M E GC
Sbjct: 477 IKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGC 536

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P + ++N++++     G P GA E + +M       DV ++  ++  L      EEA  
Sbjct: 537 TPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAK 596

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           L++E+ +KG +     + S L  +  + D
Sbjct: 597 LMQEMSSKGFQYDLITYSSILEAVGKVDD 625



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 125/285 (43%), Gaps = 20/285 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           +K + E   +   P +   N ++ +L   K  L + +    +  K+ + P++ TY+IL  
Sbjct: 349 IKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILID 408

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      +  LEEM + G  P    Y + I+T   A+    A +LF+ ++      
Sbjct: 409 GYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELK---ENC 465

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
              +A+ YA+MI    +  R+ E  +L   M   GC PDV  Y  ++ GM  A +++EA+
Sbjct: 466 GCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAF 525

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
                M   G  PDI ++N  L  L        AL ++ +M      P V ++N ++   
Sbjct: 526 SLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCL 585

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF---DCSKVE 429
              G  + A +   EM  +G   D+ TY  +++ +    DC  VE
Sbjct: 586 SRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKVDDCKMVE 630



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 10/245 (4%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D+ TY   I    + RM  E     + M  KGS   +P   +  + I+   +   +    
Sbjct: 117 DSTTYMALIRCLDEHRMFGEVWKTIQDM-VKGSCAMAPAELSEIVRILG--KAKMVNRAL 173

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKV 351
           S+   +    C P  STY  ++  +   G  E+ ++   EM ++ +  PD VTY+  +  
Sbjct: 174 SVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISA 233

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                  D A+RL+  M E G  P+ + Y  L+ +YF++G+ + A     EM  R C   
Sbjct: 234 FAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLT 293

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           V TY  +I GL    +VE+A    + ++  G K      D  LM  ++I  LG  + L D
Sbjct: 294 VFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKP-----DVVLMN-NLINILGRSNHLRD 347

Query: 472 HMRKF 476
            ++ F
Sbjct: 348 AIKLF 352


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 156/345 (45%), Gaps = 53/345 (15%)

Query: 163 KQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL-- 217
           K   +++K K   P++   N+++   C  G +D A  + + +   N  KP   TY IL  
Sbjct: 64  KTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIE 123

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      ++ L+EM+  G  PD FTYN      CK   V  A   FEF+RT  S  
Sbjct: 124 AYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRA---FEFVRTLNSRG 180

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE-- 325
             P   TY I++ AL+   + +E    +  + + GC P+V TY  ++  +C  GK+EE  
Sbjct: 181 CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESV 240

Query: 326 ---------------------------------AYKFLEEMGNKGYPPDIVTYNCFLKVL 352
                                            A +FL+ M   G+ PDIV YN  +  L
Sbjct: 241 NLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAAL 300

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C N NGD A+ ++G++ EVGC P+V +YN ++S  +  G+   A     +M  +G   DV
Sbjct: 301 CKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDV 360

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            TY  +I  L     V+EA  LL ++++   +     + + L+ L
Sbjct: 361 ITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGL 405



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 207 VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           +K   N+ NI     +  +++    PD F YN  I  FCKA  +  A  + + M+ KG  
Sbjct: 17  IKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKG-- 74

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI-NSGCLPDVSTYKEVLEGMCLAGKVEE 325
             SP   T+ IMI       +++    +   ++ ++ C P + TY  ++E   L G ++E
Sbjct: 75  -FSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDE 133

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A K L+EM ++G  PD  TYN   + LC     D A      +   GC P V TYN+L+ 
Sbjct: 134 ALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLR 193

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                G+ D   +   E+  RGC  +V TY ++I  L    K+EE+  L++ +  KGL
Sbjct: 194 ALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGL 251



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 46/314 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK   E +    +P+    N++   LCK G VD A    + + ++  KP+  TYNIL   
Sbjct: 135 LKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRA 194

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G + + E+   G  P+  TY+  I + C+   + E+ +L + M+ KG T  
Sbjct: 195 LLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPD 254

Query: 269 S--------------------------------PTAKTYAIMIVALVQNDRMEECFSLLG 296
           +                                P    Y  ++ AL +N   +    + G
Sbjct: 255 AYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFG 314

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            +   GC P+VS+Y  +L  +  +G    A   + +M +KG  PD++TYN  +  LC + 
Sbjct: 315 KLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDG 374

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             DEA+ L   M+     P++ +Y  ++    +    D A E    M + GC  +  TY 
Sbjct: 375 MVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYT 434

Query: 417 VMIDGL-FDCSKVE 429
           ++I+G+ F  S+ +
Sbjct: 435 LLIEGIGFSGSRTQ 448



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+   + PD       I  F  +R + +A  +   +   G     P    Y  +I    +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGK----PDVFAYNAVISGFCK 56

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE-MGNKGYPPDIV 343
            +R+E   ++L  M   G  PDV T+  ++   C  GK++ A K  EE + +    P ++
Sbjct: 57  ANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLI 116

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   ++        DEAL+L   M+  G  P   TYN++     + G+ D AFE    +
Sbjct: 117 TYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTL 176

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + RGC  DV TY +++  L +  K +E    + E+ ++G
Sbjct: 177 NSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRG 215



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PDV  Y  V+ G C A ++E A   L+ M  KG+ PD+VT+N  +   C     D AL++
Sbjct: 42  PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 365 YGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +  ++ +  C P++ TY +LI  Y   G  D A +   EM  RG   D  TY V+  GL 
Sbjct: 102 FEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLC 161

Query: 424 DCSKVEEACFLLEEVVNKGLK 444
              KV+ A   +  + ++G K
Sbjct: 162 KEGKVDRAFEFVRTLNSRGCK 182



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 20/190 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+I   N ++ ALCK G  D+A  I  ++      PN ++YN +             +  
Sbjct: 288 PDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGM 347

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + +M+  G  PD  TYN+ I   C+  MV EA  L   M    S    P   +Y  +++ 
Sbjct: 348 ISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADML---SGRFQPNIVSYKTVLLG 404

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+++   +L  MI +GC P+ +TY  ++EG+  +G   +A     E+ N  Y  +
Sbjct: 405 LCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAM----ELANSLYIMN 460

Query: 342 IVTYNCFLKV 351
            ++ + F ++
Sbjct: 461 AISEDSFKRL 470


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 27/332 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P++     L+D+ CK G ++ A      + ++   PN  TY  L              + 
Sbjct: 255 PDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEV 314

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI-------------- 267
            E M+  G  P+  TY   ID  CKA  + +A+ +++ M+ +   I              
Sbjct: 315 YEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGAS 374

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
           + P   TY  ++  L +  +++E   LL  M   GC P+   Y  +++G C AGK++EA 
Sbjct: 375 NEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +    M   GY P++ TY+  +  L  +K  D AL++  +M+E  C P+V  Y  +I   
Sbjct: 435 EVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGL 494

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            ++G+ D A++    M+++GC  +V TY  MIDG     +VE+   LL+++ +KG    +
Sbjct: 495 CKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNF 554

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             +   +      G L   HKL + M++ Y P
Sbjct: 555 VTYRVLINHCCSTGLLDEAHKLLEEMKQTYWP 586



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 123/278 (44%), Gaps = 33/278 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKV------------------KPNANTYNI 216
           P I     L+D LCK G ++ A  I K +K +                   +PN  TY  
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGA 384

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L                L+ M   G  P++  Y+  ID  CKA  + EA ++F  M   G
Sbjct: 385 LVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECG 444

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P   TY+ +I  L ++ R++    +L  M+ + C P+V  Y E+++G+C  GK +
Sbjct: 445 Y---DPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD 501

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EAYK +  M  KG  P++VTY   +     +   ++ L L  +M   GC P+  TY +LI
Sbjct: 502 EAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLI 561

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +     G  D A +   EM +    + V  Y  +I+G 
Sbjct: 562 NHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF 599



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 123/277 (44%), Gaps = 30/277 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P     N L+ A C+ G  DYA                       + L++M+Q G  P  
Sbjct: 110 PSPRIFNSLVHAYCRSG--DYA--------------------YAYKLLKKMVQCGCQPGY 147

Query: 235 FTYNTAIDTFCKAR-----MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             YN  I   C +      ++  A   +  M   G  ++      ++  +  +    + E
Sbjct: 148 VVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGI---GKFE 204

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           + ++++  M++ G +PD STY +V+  +C A KVE+A++  +EM   G  PD+  Y   +
Sbjct: 205 KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C     ++A   +  M   GC P+V TY  LI  Y +  +   A E +  M  +GC 
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCT 324

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            ++ TY  +IDGL    K+E+A  + + +  + +++P
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIP 361



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 126/315 (40%), Gaps = 55/315 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A E     ++    PN  TY+ L             ++
Sbjct: 411 EPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALK 470

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   ID  CK     EA  L   M  KG    +P   TY  MI 
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGC---NPNVVTYTAMID 527

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              ++ R+E+C  LL  M + GC P+  TY+ ++   C  G ++EA+K LEEM    +P 
Sbjct: 528 GFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPR 587

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG--------- 391
            +  Y   ++    N+    +L L   + E    P    Y +LI  + + G         
Sbjct: 588 HVAGYRKVIEGF--NREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELN 645

Query: 392 ----------------------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
                                       + D AFE + +M  RG   ++     +I GL 
Sbjct: 646 EELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLL 705

Query: 424 DCSKVEEACFLLEEV 438
             ++ EEA  LL+ +
Sbjct: 706 RVNRWEEALQLLDSI 720



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 99/259 (38%), Gaps = 46/259 (17%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M  MG+  D FT      + CK+    EA  L E    K   +  P    Y  MI  L +
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLE----KEEFV--PDTVLYTKMISGLCE 54

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
               EE    L  M  S CLP+V TY+ +L G     K+    + L  M  +G  P    
Sbjct: 55  ASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRI 114

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS------------------M 386
           +N  +   C + +   A +L  +M++ GC P    YN+LI                    
Sbjct: 115 FNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKA 174

Query: 387 YFEL----------------------GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           Y E+                      G+ + A+    EM  +G   D  TY  +I  L +
Sbjct: 175 YGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCN 234

Query: 425 CSKVEEACFLLEEVVNKGL 443
            SKVE+A  L +E+   G+
Sbjct: 235 ASKVEKAFQLFQEMKRNGI 253



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 19/205 (9%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +M+D   ++ +V    +  L +L+Q + K      P      +L++  C  GL+D A  +
Sbjct: 524 AMIDGFGKSGRV----EKCLELLQQMSSK---GCAPNFVTYRVLINHCCSTGLLDEAHKL 576

Query: 200 CKRVKN-----------KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
            + +K            KV    N   I  +    E+ +    P    Y   ID F KA 
Sbjct: 577 LEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAG 636

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            +  A +L E + +  S  S+     +  +I  L    + ++ F L   MI+ G +P++S
Sbjct: 637 RLEIALELNEEL-SSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELS 695

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEM 333
               +++G+    + EEA + L+ +
Sbjct: 696 ILVHLIKGLLRVNRWEEALQLLDSI 720



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   GY  D  T  CF   LC +    EAL L  +   V   P    Y  +IS   E   
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEKEEFV---PDTVLYTKMISGLCEASL 57

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            + A +    M    C  +V TY +++ G  +  K+     +L  ++ +G     R F+S
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 453 YLMQLSVIGDLGAIHKLSDHM 473
            +      GD    +KL   M
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKM 138


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 147/336 (43%), Gaps = 52/336 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P++   N+L+   CK G +D A  + +R+   V P+  TYN +             M+ L
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERMS--VAPDVVTYNTILRSLCDSGKLKEAMEVL 232

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +  +Q    PD  TY   I+  C    V +A  L + MR KG     P   TY ++I  +
Sbjct: 233 DRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGC---KPDVVTYNVLINGI 289

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R++E    L +M   GC P+V T+  +L  MC  G+  +A + L +M  KG  P +
Sbjct: 290 CKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSV 349

Query: 343 VTYNCFLKVLC-----------------------------------DNKNGDEALRLYGR 367
           VT+N  +  LC                                     K  D A+     
Sbjct: 350 VTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEI 409

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+  GC+P + TYN L++   + G+ D A E  +++  +GC+  + TY  +IDGL    K
Sbjct: 410 MVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 469

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            E A  LLEE+  KGLK     + + L  L   G +
Sbjct: 470 TEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKV 505



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 154/339 (45%), Gaps = 47/339 (13%)

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL----- 217
           Q  E++ V   P++   N +L +LC  G L +  E + ++++ +  P+  TY IL     
Sbjct: 198 QVLERMSV--APDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATC 255

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM---------- 260
                   M+ L+EM + G  PD  TYN  I+  CK   + EA      M          
Sbjct: 256 NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVI 315

Query: 261 ------RTKGSTIS----------------SPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
                 R+  ST                  SP+  T+ I+I  L +   +     +L  M
Sbjct: 316 THNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKM 375

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
              GC+P+  +Y  +L G C   K++ A ++LE M ++G  PDIVTYN  L  LC +   
Sbjct: 376 PKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKA 435

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           D A+ +  ++   GC P + TYN +I    ++G+ + A E   EM ++G   D+ TY  +
Sbjct: 436 DAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTL 495

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + GL    KV+EA  +  ++    +K     +++ ++ L
Sbjct: 496 LRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 534



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 130/264 (49%), Gaps = 16/264 (6%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   N++L ++C  G  +D    +   ++    P+  T+NIL             + 
Sbjct: 311 QPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAID 370

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M + G  P++ +YN  +  FC+ + +  A +  E M ++G     P   TY  ++ 
Sbjct: 371 VLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCY---PDIVTYNTLLT 427

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ + +    +L  + + GC P + TY  V++G+   GK E A + LEEM  KG  P
Sbjct: 428 ALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKP 487

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  L+ L      DEA++++  M  +   PS  TYN ++    +  +   A +  
Sbjct: 488 DIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFL 547

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFD 424
             M ++GC     TY ++I+G+ D
Sbjct: 548 AYMVEKGCKPTKATYTILIEGIAD 571



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 22/299 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN----KVKPNANTYNIL 217
           +K   E  K   +P++   N+L++ +CK G +D A    K + N      +PN  T+NI+
Sbjct: 264 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEA---IKFLNNMPLYGCQPNVITHNII 320

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         + L +M++ G +P   T+N  I+  C+ R++  A D+ E M   G 
Sbjct: 321 LRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGC 380

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P + +Y  ++    Q  +M+     L  M++ GC PD+ TY  +L  +C  GK + 
Sbjct: 381 M---PNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADA 437

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A + L ++ +KG  P ++TYN  +  L      + A  L   M   G  P + TY+ L+ 
Sbjct: 438 AVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLR 497

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
                G+ D A + +H+M+         TY  ++ GL    +   A   L  +V KG K
Sbjct: 498 GLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCK 556



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G++ LE MI  G  PD     + I  FC++    +A  + E +   G+    P   TY +
Sbjct: 126 GLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAV---PDVITYNV 182

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I    ++  +++   +L  M      PDV TY  +L  +C +GK++EA + L+    + 
Sbjct: 183 LIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRE 239

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD++TY   ++  C++    +A++L   M + GC P V TYN+LI+   + G  D A 
Sbjct: 240 CYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAI 299

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +  + M   GC  +V T+ +++  +    +  +A  LL +++ KG
Sbjct: 300 KFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG 344



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 3/168 (1%)

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           I +  LV+N  +EE    L  MI  G +PDV     ++ G C +GK  +A + +E + N 
Sbjct: 112 IHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENS 171

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD++TYN  +   C +   D+AL++  RM      P V TYN ++    + G+   A
Sbjct: 172 GAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEA 228

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            E      +R C  DV TY ++I+   + S V +A  LL+E+  KG K
Sbjct: 229 MEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCK 276



 Score = 38.5 bits (88), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%)

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  L+ L  N   +E L+   RMI  G  P V     LI  +   G+   A      ++ 
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            G   DV TY V+I G     ++++A  +LE +
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERM 203


>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g43820
 gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 546

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 181/411 (44%), Gaps = 26/411 (6%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           ++K+L SLG+ L+ D V  VL R     +    FF WA  +     +  +Y++++  L  
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163

Query: 128 TKYKAKQFRLVCSM--------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINA 179
            K  +    ++  M        L+ +      FV V  +   ++ + E      +    +
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI-------LGM-----QTLEEMIQ 227
            N LL  LC+   V  A+++    K  +  ++ +YNI       LG      + L+EM++
Sbjct: 224 FNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVE 283

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  +Y+  I+   +   + ++ ++F+ ++ KG+    P A  Y  MI   +    
Sbjct: 284 SGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNV---PDANVYNAMICNFISARD 340

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E       M++  C P++ TY +++ G+    KV +A +  EEM ++G  P       
Sbjct: 341 FDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTS 400

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           FLK LC       A+ +Y +  + GC  S   Y +L+      G+       W EM + G
Sbjct: 401 FLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESG 460

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLM 455
              DV+ Y  ++DGL     +E A  ++EE + KG    +  Y +  S LM
Sbjct: 461 YPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLM 511



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/407 (19%), Positives = 162/407 (39%), Gaps = 78/407 (19%)

Query: 7   VSPTEAQYAVLVRVIRTKSLQSYIGKV-PSLVCKVFDESSDSVSDVAKLYEAIIDNSNAY 65
           V+     Y+V++R +  + L S++  V   +VC+  +   + ++     +  +     A 
Sbjct: 147 VTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAI 206

Query: 66  DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL 125
           +  E++ +S GV  +T+S   +L+       ++    ++   + N   +  +YN+MI   
Sbjct: 207 ELFEES-ESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGW 265

Query: 126 SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLD 185
           S                            V+ +  +LK+  E       P+  + + L++
Sbjct: 266 SK------------------------LGEVEEMEKVLKEMVES---GFGPDCLSYSHLIE 298

Query: 186 ALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------------GMQTLEEMIQMGHAP 232
            L + G ++ +  I   +K+K   P+AN YN +             M+    M+     P
Sbjct: 299 GLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEP 358

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY-----------AIMIVA 281
           +  TY+  +    K R V++A ++FE M ++G   ++    ++           A M++ 
Sbjct: 359 NLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVI- 417

Query: 282 LVQNDRMEEC----------------FSLLGHMIN-------SGCLPDVSTYKEVLEGMC 318
             Q  R   C                F   G ++N       SG   DV  Y+ +++G+C
Sbjct: 418 -YQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLC 476

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           + G +E A   +EE   KG+ P+   Y+     L  +   + A +L+
Sbjct: 477 IIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLF 523


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 149/299 (49%), Gaps = 21/299 (7%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL 217
           L ++++ TEK      P++    +++D LC+ G VD A E   K ++     N   YN L
Sbjct: 30  LEMVEEMTEK---GVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNAL 86

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         + LEEM   G+ PDN TYNT +   C+   V+EA   F+ M ++G 
Sbjct: 87  INGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRG- 145

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLG--HMINSGCLPDVSTYKEVLEGMCLAGKV 323
              SP    Y  ++ AL +  ++ E + L     M +    PD+ TY  +++G C   K 
Sbjct: 146 --YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKT 203

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +EA K  +++  KGY PD VTYN  L  L    N DEA  ++ +M++ GC P+  TY+++
Sbjct: 204 DEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIV 263

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +S +  +G      E + EM ++  + DV     +ID L    KV++A  +LEE+   G
Sbjct: 264 LSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIG 322



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 146/315 (46%), Gaps = 18/315 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------------G 218
           +P+    N +L  LC+ G V  A+     + ++   P+   YN L              G
Sbjct: 112 EPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWG 171

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +    +M     APD  TYNT ID FC+     EA  LF+ +  KG     P   TY  +
Sbjct: 172 LFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYM---PDTVTYNSI 228

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           ++ L +   M+E   +   M++SGC P+ +TY  VL G C  G +    +  EEM  K +
Sbjct: 229 LLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRF 288

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD++  N  + +LC  K  D+A ++   M ++G  P V TYN+L+    +    D A E
Sbjct: 289 SPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHE 348

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +  M   GCA D+ +Y V+++GL   +KV +A  L + ++ + L      F+  +  L 
Sbjct: 349 LFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLC 408

Query: 459 VIGDLGAIHKLSDHM 473
             G L     L D M
Sbjct: 409 KAGKLDEAKDLLDVM 423



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M + G  PD  TY+T I   CK   VTEA ++ E M  KG    +P   TY I++  L +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGV---NPDVATYTIIVDRLCR 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             +++E   L   MI  GC  +   Y  ++ G+C    +E AYK LEEM +KGY PD +T
Sbjct: 58  AGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNIT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  L  LC      EA + +  M   G  P V  YN L+   ++ G+   A+  +  MD
Sbjct: 118 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMD 177

Query: 405 --KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              R  A D+ TY  +IDG     K +EA  L ++V+ KG       ++S L+ L+
Sbjct: 178 MADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLA 233



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 181/426 (42%), Gaps = 63/426 (14%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM--------LDYMKRNNKV--FVPVDVLL 159
            Y+ + +AYN ++D L      A+ + L  +M         D +  N  +  F  V+   
Sbjct: 145 GYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTD 204

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL- 217
             +K + + I     P+    N +L  L +   +D AE + K+ V +   PN  TY+I+ 
Sbjct: 205 EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++  EEM +   +PD    N  ID  CKA+ V +A  + E M   G+ 
Sbjct: 265 SGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAV 324

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL------------ 314
              P   TY I++  L + + +++   L   M+++GC PD+ +Y  VL            
Sbjct: 325 ---PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDA 381

Query: 315 -----------------------EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
                                  +G+C AGK++EA   L+ M      PD VT    +  
Sbjct: 382 RVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHG 441

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC--A 409
           LC +K  DEA+RL+  M+E G    V  +N++++     G+   A   +  M K     +
Sbjct: 442 LCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFS 501

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            DV TY  +++ L +  +V++A    +++   G    Y  +++ +  L   G      +L
Sbjct: 502 PDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRL 561

Query: 470 SDHMRK 475
           +  M++
Sbjct: 562 TQAMKE 567



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 18/264 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---- 217
           K   E  K+   P++   N+LLD LCK  LVD A E     V N   P+  +Y+++    
Sbjct: 313 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                        + MI+    PD  T+N  +D  CKA  + EA DL + M         
Sbjct: 373 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVL--- 429

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T   ++  L ++ R +E   L  +M+  G + DV  +  VL G+C  GK+ +A  F
Sbjct: 430 PDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLF 489

Query: 330 LEEM--GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
            + M   +  + PD+VTY   +  L +    D+A+  + +M   GC P    YN L++  
Sbjct: 490 FKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGL 549

Query: 388 FELGEPDGAFETWHEMDKRGCAQD 411
            + G    A      M ++G   D
Sbjct: 550 RKQGRHIQADRLTQAMKEKGFLSD 573



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 136/307 (44%), Gaps = 23/307 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L+ Y E  + +  P++   N ++D LCK   VD A  + + + K    P+  TYNIL   
Sbjct: 277 LELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDG 336

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +    M+  G APD  +Y+  ++  CK   V +A  LF+ M  +     
Sbjct: 337 LCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLV-- 394

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   T+ I++  L +  +++E   LL  M     LPD  T   ++ G+C   + +EA +
Sbjct: 395 -PDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVR 453

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC--WPSVQTYNMLISM 386
             + M  KG   D++ +N  L  LC      +AL  +  M++      P V TY  L++ 
Sbjct: 454 LFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNA 513

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG---- 442
             E G  D A + + +M   GCA D   Y  +++GL    +  +A  L + +  KG    
Sbjct: 514 LIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573

Query: 443 -LKLPYR 448
             K P R
Sbjct: 574 CFKAPLR 580



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 1/148 (0%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  KG+ PD+VTY+  +  LC      EAL +   M E G  P V TY +++      G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A E +H+M +RGC+ +   Y  +I+GL     +E A  LLEE+ +KG +     +++
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 453 YLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
            L  L  +G +    +  D M  + Y+P
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSP 148



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 24/248 (9%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ---------YT 166
           + YN+++D L  T    K   L  +M+D     + V   V VL  + K          + 
Sbjct: 328 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV-VLNGLCKTNKVHDARVLFD 386

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-------- 217
             I+ K  P++   N+L+D LCK G +D A+ +   + ++ V P+  T   L        
Sbjct: 387 RMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDK 446

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M++ G   D   +N  +   C+   + +A   F+ M  K     SP   
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSM-VKSDGEFSPDVV 505

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  ++ AL++  R+++       M  SGC PD   Y  ++ G+   G+  +A +  + M
Sbjct: 506 TYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 565

Query: 334 GNKGYPPD 341
             KG+  D
Sbjct: 566 KEKGFLSD 573


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E ++V   P I   N L+  LC+ GL +   E + +  ++   P+   Y  +        
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  P+   YNT +   C A    EA +L   M  K   +      
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD---V 357

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M++ GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            + G  P+ V+Y   LK LC      +A  L  +MI+ GC P+  T+N LI+   + G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K EEA  LL  +VNKG+      + S 
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS 574



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 25/264 (9%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           NL+L+A+C+ G VD A                      +  L ++   G   D  +YN  
Sbjct: 185 NLVLNAICEQGCVDEA----------------------VGLLRKLAFFGCEADIVSYNAV 222

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +   C A+      D+ E M        +P   T+  +I  L +N   E    +L  M  
Sbjct: 223 LKGLCMAK---RWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GC PD+  Y  +++G+C  G +E A + L  M + G  P++V YN  LK LC  +   E
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L   M +  C     T+N+L+  + + G  D   E   +M   GC  DV TY  +I+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           G      ++EA  LL+ + + G K
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCK 423



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 54/295 (18%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            N+L+D  C+ GLVD       RV               ++ LE+M+  G  PD  TY T
Sbjct: 359 FNILVDFFCQNGLVD-------RV---------------IELLEQMLSHGCMPDVITYTT 396

Query: 240 AIDTFCKARMVTEAADLFEFMRTKG---STIS---------------------------- 268
            I+ FCK  ++ EA  L + M + G   +T+S                            
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 269 -SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  +I  L +   +E+   LL  M+ +GC PD+ +Y  V++G+  AGK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L  M NKG  P+ + Y+     L      ++ ++++  + +         YN +IS  
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +  E D A + +  M   GC  +  TY ++I GL      +EA  LL E+ ++G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 11/217 (5%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ +T+   +   C    + +A ++ + M  KG    +P    Y +++ A  ++      
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGC---APIPPMYHVILEAACRSGGFRNS 165

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +L  M   GC  D      VL  +C  G V+EA   L ++   G   DIV+YN  LK 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE----MDKRG 407
           LC  K   +   L   M+ V C P++ T+N LI         +G FE  HE    M + G
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR----NGLFERVHEVLAQMSEHG 281

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           C  D+  Y  +IDG+     +E A  +L  + + GLK
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 3/234 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L+EM   G AP    Y+  ++  C++     +  + E M  KG T+ +       +
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN---L 186

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ A+ +   ++E   LL  +   GC  D+ +Y  VL+G+C+A +  +  + ++EM    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+IVT+N  +  LC N   +    +  +M E GC P ++ Y  +I    + G  + A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           E  + M   G   +V  Y  ++ GL    + +EA  LL E+  K   L    F+
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           ++ I+    P     N L++ LCK GLV+ A                      ++ L++M
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQA----------------------IELLKQM 487

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G +PD  +Y+T ID   KA    EA +L   M  KG    SP    Y+ +  AL + 
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG---ISPNTIIYSSIACALSRE 544

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R+ +   +  ++ ++    D   Y  V+  +C   + + A  F   M + G  P+  TY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVG 372
              +K L       EA  L   +   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  Y  ++ G C AG++  A +    +     PP+  T+   ++ LC      +AL +  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M   GC P    Y++++      G    +      M  +GC  D     ++++ + +  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            V+EA  LL ++   G +     +++ L  L +    G + +L D M +
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E ++V   P I   N L+  LC+ GL +   E + +  ++   P+   Y  +        
Sbjct: 241 EMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEG 300

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  P+   YNT +   C A    EA +L   M  K   +      
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD---V 357

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M++ GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            + G  P+ V+Y   LK LC      +A  L  +MI+ GC P+  T+N LI+   + G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K EEA  LL  +VNKG+      + S 
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVIS 574



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 25/264 (9%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           NL+L+A+C+ G VD A                      +  L ++   G   D  +YN  
Sbjct: 185 NLVLNAICEQGCVDEA----------------------VGLLRKLAFFGCEADIVSYNAV 222

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +   C A+      D+ E M        +P   T+  +I  L +N   E    +L  M  
Sbjct: 223 LKGLCMAK---RWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GC PD+  Y  +++G+C  G +E A + L  M + G  P++V YN  LK LC  +   E
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L   M +  C     T+N+L+  + + G  D   E   +M   GC  DV TY  +I+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           G      ++EA  LL+ + + G K
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCK 423



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 54/295 (18%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            N+L+D  C+ GLVD       RV               ++ LE+M+  G  PD  TY T
Sbjct: 359 FNILVDFFCQNGLVD-------RV---------------IELLEQMLSHGCMPDVITYTT 396

Query: 240 AIDTFCKARMVTEAADLFEFMRTKG---STIS---------------------------- 268
            I+ FCK  ++ EA  L + M + G   +T+S                            
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 269 -SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  +I  L +   +E+   LL  M+ +GC PD+ +Y  V++G+  AGK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L  M NKG  P+ + Y+     L      ++ ++++  + +         YN +IS  
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +  E D A + +  M   GC  +  TY ++I GL      +EA  LL E+ ++G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 11/217 (5%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ +T+   +   C    + +A ++ + M  KG    +P    Y +++ A  ++      
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGC---APIPPMYHVILEAACRSGGFRNS 165

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +L  M   GC  D      VL  +C  G V+EA   L ++   G   DIV+YN  LK 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE----MDKRG 407
           LC  K   +   L   M+ V C P++ T+N LI         +G FE  HE    M + G
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR----NGLFERVHEVLAQMSEHG 281

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           C  D+  Y  +IDG+     +E A  +L  + + GLK
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 3/234 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L+EM   G AP    Y+  ++  C++     +  + E M  KG T+ +       +
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN---L 186

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ A+ +   ++E   LL  +   GC  D+ +Y  VL+G+C+A +  +  + ++EM    
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+IVT+N  +  LC N   +    +  +M E GC P ++ Y  +I    + G  + A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           E  + M   G   +V  Y  ++ GL    + +EA  LL E+  K   L    F+
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           ++ I+    P     N L++ LCK GLV+ A                      ++ L++M
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQA----------------------IELLKQM 487

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G +PD  +Y+T ID   KA    EA +L   M  KG    SP    Y+ +  AL + 
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG---ISPNTIIYSSIACALSRE 544

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R+ +   +  ++ ++    D   Y  V+  +C   + + A  F   M + G  P+  TY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVG 372
              +K L       EA  L   +   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  Y  ++ G C AG++  A +    +     PP+  T+   ++ LC      +AL +  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M   GC P    Y++++      G    +      M  +GC  D     ++++ + +  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            V+EA  LL ++   G +     +++ L  L +    G + +L D M +
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M+ L+EM   G  PD  TYN  ++  C+   V +A    EF++   S    P   +Y I+
Sbjct: 12  MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDA---IEFLKNLPSYGCEPNTVSYNIV 68

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L   +R E+   L+G M   GC P+V T+  ++  +C  G VE A + LE++   G 
Sbjct: 69  LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 128

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+ ++YN  L   C  K  D+A+     M+  GC+P + +YN L++     GE D A E
Sbjct: 129 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 188

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             H++  +GCA  + +Y  +IDGL    K +EA  LL E+V+KGL+
Sbjct: 189 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ 234



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P   + N++L  LC     + AE +   +  K   PN  T+N+L             ++
Sbjct: 59  EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 118

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE++ + G  P++ +YN  +  FCK + + +A    + M ++G     P   +Y  ++ 
Sbjct: 119 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY---PDIVSYNTLLT 175

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++  ++    LL  + + GC P + +Y  V++G+  AGK +EA + L EM +KG  P
Sbjct: 176 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 235

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+     LC     ++A+R +G++ ++G  P+   YN +I    +  E   A + +
Sbjct: 236 DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLF 295

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M   GC  +  TY ++I+GL     ++EA  LL+E+ ++G+
Sbjct: 296 AYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV 338



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 25/270 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+I   N++++ +C+ G VD A                      ++ L+ +   G  P+ 
Sbjct: 25  PDIVTYNVVVNGICQEGRVDDA----------------------IEFLKNLPSYGCEPNT 62

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            +YN  +   C A    +A +L   M  KG     P   T+ ++I  L +   +E    +
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGC---PPNVVTFNMLISFLCRKGLVEPALEV 119

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  +   GC P+  +Y  +L   C   K+++A  FL+ M ++G  PDIV+YN  L  LC 
Sbjct: 120 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 179

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           +   D A+ L  ++ + GC P + +YN +I    + G+   A E  +EM  +G   D+ T
Sbjct: 180 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 239

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           Y  +  GL    ++E+A     +V + G++
Sbjct: 240 YSTIAAGLCREDRIEDAIRAFGKVQDMGIR 269



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++   LL  M + GC PD+ TY  V+ G+C  G+V++A +FL+ + + G  P+ V+YN  
Sbjct: 9   KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 68

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           LK LC  +  ++A  L G M + GC P+V T+NMLIS     G  + A E   ++ K GC
Sbjct: 69  LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 128

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA--- 465
             +  +Y  ++       K+++A   L+ +V++G       +++ L  L   G++     
Sbjct: 129 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 188

Query: 466 -IHKLSD 471
            +H+L D
Sbjct: 189 LLHQLKD 195



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C     ++A K L+EM +KG  PDIVTYN  +  +C     D+A+     +   GC P+ 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            +YN+++         + A E   EM ++GC  +V T+ ++I  L     VE A  +LE+
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 438 VVNKG 442
           +   G
Sbjct: 123 IPKYG 127


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 165/364 (45%), Gaps = 24/364 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL--------KQYTE 167
           + Y  +ID L         +RL  +MLD     N V     +    +        K + E
Sbjct: 462 VTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKE 521

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----- 219
             +   QP++  LN  +D + K G V+    I + +K     P+  +Y+IL  G+     
Sbjct: 522 MNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581

Query: 220 -----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                     M Q G A D   YN  +D FCK+  + +A ++ E M+ K      PT  T
Sbjct: 582 ARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRV---PPTVAT 638

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  LEEM 
Sbjct: 639 YGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM 698

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P++ T+N  +  L   +  +EAL  +  M E+ C P+  TY++LI+    + + +
Sbjct: 699 KKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYN 758

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            AF  W EM K+G   +V TY  MI GL     + +AC L E     G       F++ +
Sbjct: 759 KAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALI 818

Query: 455 MQLS 458
             +S
Sbjct: 819 EGMS 822



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 143/315 (45%), Gaps = 17/315 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILG 218
           M  K + E      +P+  +   ++  LCK G +  AE +  +++  +  P A  YN + 
Sbjct: 270 MAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMI 329

Query: 219 M------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           M            + L+++ + G  P   ++N+ +    K R V EA  LFE M+     
Sbjct: 330 MGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKD--- 386

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
            + P + TY I+I  L    ++EE + +   M ++G  P++ T   +++ +C A K E A
Sbjct: 387 -AEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPA 445

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           Y+  E    +G  P+ VTY   +  L    N D+A RL+  M++ G   +   Y  LI  
Sbjct: 446 YEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRN 505

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +F  G  +   + + EM++RGC  D+      +D +F    VE+   + E++   G    
Sbjct: 506 FFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPD 565

Query: 447 YRKFDSYLMQLSVIG 461
            R +   +  L+  G
Sbjct: 566 VRSYSILIHGLTKAG 580



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 26/269 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P+I   N+ +D   K G VD A                       +   E+   G  PD
Sbjct: 249 EPDIVLYNVCIDCFGKAGNVDMA----------------------WKFFHELKSQGLKPD 286

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           + +Y + I   CKA  ++EA +LF  M T+ +    P A  Y  MI+      + E  + 
Sbjct: 287 DVSYTSMIWVLCKAGRLSEAEELFGQMETERAV---PCAYAYNTMIMGYGSAGQFENAYK 343

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  +   GC+P V ++  +L  +    KV+EA    E M  K   P+  TYN  + +LC
Sbjct: 344 LLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM-KKDAEPNSSTYNIIIDMLC 402

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                +EA  +   M   G +P++ T N+++    +  + + A+E +    +RGC  +  
Sbjct: 403 MAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSV 462

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           TYC +IDGL     V++A  L E +++ G
Sbjct: 463 TYCSLIDGLGKKGNVDDAYRLFENMLDTG 491



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 164/383 (42%), Gaps = 31/383 (8%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQYT-------- 166
           AYN MI    S    A QF     +LD +K    +   V  + +L  L +          
Sbjct: 324 AYNTMIMGYGS----AGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTL 379

Query: 167 -EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------- 217
            E +K   +P  +  N+++D LC  G V+ A  I   +++  + PN  T NI+       
Sbjct: 380 FEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKA 439

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  +  E   Q G  P++ TY + ID   K   V +A  LFE M   G   ++P  
Sbjct: 440 KKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHN-ANPV- 497

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  +I     + R E+   +   M   GC PD++     ++ +  AG VE+     E+
Sbjct: 498 -VYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFED 556

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           +   G+ PD+ +Y+  +  L       E   ++  M + G     + YN ++  + + G+
Sbjct: 557 IKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGK 616

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A+E   EM  +     V TY  +IDGL    +++EA  L EE  +KG++L    + S
Sbjct: 617 LDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSS 676

Query: 453 YLMQLSVIGDLGAIHKLSDHMRK 475
            +     +G +   + + + M K
Sbjct: 677 LIDGFGKVGRIDEAYLILEEMMK 699



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 16/266 (6%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN--ILGMQTL----------EEM 225
           A N ++D  CK G +D A  + + +K  +V P   TY   I G+  +          EE 
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEA 662

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
              G   +   Y++ ID F K   + EA  + E M  KG T   P   T+  ++ ALV+ 
Sbjct: 663 KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLT---PNVYTWNSLMDALVKA 719

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           + + E       M    C P+  TY  ++ G+C   K  +A+ F +EM  +G  P++VTY
Sbjct: 720 EEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTY 779

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  L    N  +A  L+ R    G  P   ++N LI           A+  + E   
Sbjct: 780 TTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRL 839

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEA 431
           +GC  +V     ++D L     +E+A
Sbjct: 840 KGCRINVKACISLLDALNKAECLEQA 865



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 3/217 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + +  M ++   P    Y   I    +AR    A +L   M+  G  +  P    +  ++
Sbjct: 168 RVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPL---FTTLV 224

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            AL +  R+E   +L+  +  S   PD+  Y   ++    AG V+ A+KF  E+ ++G  
Sbjct: 225 RALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLK 284

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD V+Y   + VLC      EA  L+G+M      P    YN +I  Y   G+ + A++ 
Sbjct: 285 PDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKL 344

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             ++ +RGC   V ++  ++  L    KV+EA  L E
Sbjct: 345 LDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFE 381


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 201/472 (42%), Gaps = 58/472 (12%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +I+  +A++  +E  L  L   L    V  VLQ  Q +E++A RFF WA  Q  Y H+P+
Sbjct: 77  LIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQ-LQTDERVALRFFYWADRQWRYRHDPI 135

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLD-YMKRNNKVFVPVDV-------LLMILKQYTEK 168
            Y  M++ILS TK      R++  M    ++R  + F  V V       L   ++  T  
Sbjct: 136 VYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMM 195

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---------- 217
            K   +P+++  N  +  L     +D A    +R++  +++PN  TYN L          
Sbjct: 196 QKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRL 255

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE----------------------- 252
              M+ + EM   G +PD  +Y T +   CK + + E                       
Sbjct: 256 EDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNT 315

Query: 253 ----------AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
                       +  EF+R             Y+ ++ +  +  RM++   ++  M + G
Sbjct: 316 FVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKG 375

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C+PDV TY  V+ G+C   KV++A K L +M   G  P+ V+Y   L  LC N N  EA 
Sbjct: 376 CIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAR 435

Query: 363 RLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            +   M E   W P+  TY++L+  +   G+   A +   EM K+G         ++I  
Sbjct: 436 EMMN-MSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQS 494

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           L    KV+EA   +E+ +N G  +    F + +       DL A   L D M
Sbjct: 495 LCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM 546



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 9/270 (3%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + + EM   G  PD  TY + I+  C+ R V +A  +   M   G     P   +Y  ++
Sbjct: 366 EIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGC---KPNTVSYTALL 422

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +N    E   ++        +P+  TY  ++ G    GK  EA   + EM  KG+ 
Sbjct: 423 NGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFF 482

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P  V  N  ++ LC  +  DEA R   + +  GC  +V  +  +I  + +  + + A   
Sbjct: 483 PTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSL 542

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             +M       DV TY  +ID L    ++EEA  L  +++  GL      + + + Q   
Sbjct: 543 LDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCR 602

Query: 460 IGDLGAIHKLSDHM------RKFYNPVIAR 483
           +G +  + KL + M      R  YN VI +
Sbjct: 603 MGRVEDLLKLLEKMLSRQECRTAYNQVIEK 632



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 123/323 (38%), Gaps = 47/323 (14%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P   +   LL+ LCK G  ++  E +    ++   PNA TY++L               
Sbjct: 412 KPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACD 471

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + EMI+ G  P     N  I + C+   V EA    E     G  ++            
Sbjct: 472 LVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFC 531

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY  +I AL +  R+EE   L   M+  G +P   
Sbjct: 532 QKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPV 591

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V+   C  G+VE+  K LE+M ++        YN  ++ LC   N ++A +L G++
Sbjct: 592 TYRTVIHQYCRMGRVEDLLKLLEKMLSRQECR--TAYNQVIEKLCSFGNLEQAYKLLGKV 649

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +         T +MLI  Y   G P  ++     M  R    D+     +   L    K 
Sbjct: 650 LRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKS 709

Query: 429 EEACFLLEEVVNKGLKLPYRKFD 451
           EEA  L+   V +G   P  + D
Sbjct: 710 EEADKLILRFVERGRISPQCQLD 732


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 168/365 (46%), Gaps = 24/365 (6%)

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171
           AH+     LM++ +SS+     +      M        + FV    +   L+     +++
Sbjct: 198 AHQVRTAVLMLEEMSSSGVAPDETTFTTLM--------QGFVEEGSIKAALRVKARMLEM 249

Query: 172 KTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------G 218
              P    +N+L++  CK G V D    I + + N  +P+  TYN               
Sbjct: 250 GCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHA 309

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++ ++ M+Q GH PD FTYN  ++  CK   + EA  +   M  +G     P   T+  +
Sbjct: 310 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCL---PDITTFNTL 366

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           IVAL   +R+EE   L   +   G  PDV T+  ++  +C  G  + A +  EEM + G 
Sbjct: 367 IVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGC 426

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD VTYN  +  LC      +AL L   M   GC  S  TYN +I    +    + A E
Sbjct: 427 TPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEE 486

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            + +MD +G +++  T+  +IDGL    ++++A  L+ +++++GL+     ++S L    
Sbjct: 487 VFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYC 546

Query: 459 VIGDL 463
             GD+
Sbjct: 547 KQGDI 551



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 146/296 (49%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQM 228
           P++   N++++ LCK G ++ A+ I  + V+    P+  T+N L         LEE + +
Sbjct: 323 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDL 382

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G +PD +T+N  I+  CK      A  LFE M++ G T   P   TY  +I  
Sbjct: 383 ARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCT---PDEVTYNTLIDN 439

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ +   LL  M ++GC     TY  +++G+C   ++EEA +  ++M  +G   +
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+N  +  LC +K  D+A +L  +MI  G  P+  TYN +++ Y + G+   A +   
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQ 559

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   G   DV TY  +I+GL    + + A  LL  +  KG++   + ++  +  L
Sbjct: 560 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSL 615



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 126/251 (50%), Gaps = 3/251 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM + G  PD  T+NT +   C+A  V  A  + E M + G    +P   T+  ++   V
Sbjct: 175 EMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGV---APDETTFTTLMQGFV 231

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   ++    +   M+  GC P   T   ++ G C  G+VE+A  ++++    G+ PD +
Sbjct: 232 EEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQI 291

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN F+  LC N +   AL++   M++ G  P V TYN++++   + G+ + A    ++M
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            +RGC  D+ T+  +I  L   +++EEA  L  +V  KGL      F+  +  L  +GD 
Sbjct: 352 VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 464 GAIHKLSDHMR 474
               +L + M+
Sbjct: 412 QLALRLFEEMK 422



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 180/419 (42%), Gaps = 37/419 (8%)

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAY--------------NLMIDILSSTKYKAKQF 135
           R Q +   A R    A  ++++A  P  Y              +LM  +++  + +  Q 
Sbjct: 52  REQPDPDAALRMLNAALAREDFAPGPEVYEEIIRKLGAAAGAADLMKVLVTEMRREGHQV 111

Query: 136 RL--VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193
           R+  V S L+   R  ++FV  D + ++L Q      +  Q +    N LL+ L +   +
Sbjct: 112 RVGVVHSFLESYARQ-QLFV--DAVDLVLNQLDPLFGI--QADTVVYNHLLNVLVEGSKM 166

Query: 194 DYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
              ET+   +  + +KP+  T+N L             +  LEEM   G APD  T+ T 
Sbjct: 167 KLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTL 226

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +  F +   +  A  +   M   G    SPT  T  ++I    +  R+E+    +   I 
Sbjct: 227 MQGFVEEGSIKAALRVKARMLEMGC---SPTKVTVNVLINGYCKLGRVEDALGYIQQEIA 283

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +G  PD  TY   + G+C  G V  A K ++ M  +G+ PD+ TYN  +  LC N   +E
Sbjct: 284 NGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 343

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  +  +M+E GC P + T+N LI         + A +   ++  +G + DV T+ ++I+
Sbjct: 344 AKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILIN 403

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            L      + A  L EE+ + G       +++ +  L  +G LG    L   M     P
Sbjct: 404 ALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCP 462



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L++ALCK G    A  + + +K+    P+  TYN L             +  
Sbjct: 393 PDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDL 452

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G      TYNT ID  CK   + EA ++F+ M  +G    S  A T+  +I  
Sbjct: 453 LKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGI---SRNAITFNTLIDG 509

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+++   L+  MI+ G  P+  TY  +L   C  G +++A   L+ M   G+  D
Sbjct: 510 LCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVD 569

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC       AL+L   M   G   + + YN +I   F       A   + 
Sbjct: 570 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFR 629

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++  GL      + EA   L E+V+KG  +P  +F S+ M    +
Sbjct: 630 EMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGF-IP--EFSSFRMLAEGL 686

Query: 461 GDLG 464
            +LG
Sbjct: 687 LNLG 690



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 116/281 (41%), Gaps = 40/281 (14%)

Query: 94  EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV 153
           + ++A R F           E + YN +ID L S     K        LD +K       
Sbjct: 410 DPQLALRLFEEMKSSGCTPDE-VTYNTLIDNLCSLGKLGKA-------LDLLKEMESAGC 461

Query: 154 PVDVLL--MILKQYTEKIKVKTQPEI-----------NAL--NLLLDALCKCGLVDYA-E 197
           P   +    I+    +K++++   E+           NA+  N L+D LCK   +D A +
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQ 521

Query: 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
            I + +   ++PN  TYN +                L+ M   G   D  TY T I+  C
Sbjct: 522 LISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLC 581

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           KA     A  L   MR KG      T K Y  +I +L + +   +  +L   M   G  P
Sbjct: 582 KAGRTQVALKLLRGMRIKGM---RATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPP 638

Query: 306 DVSTYKEVLEGMCLAG-KVEEAYKFLEEMGNKGYPPDIVTY 345
           D  TYK V  G+C  G  + EA+ FL EM +KG+ P+  ++
Sbjct: 639 DAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSF 679


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM 219
           K + E  +   QP++  LN  +D + K G V+    I + +K     P+  +Y+IL  G+
Sbjct: 10  KIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGL 69

Query: 220 ----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                          M Q G A D   YN  +D FCK+  V +A +  E M+ K      
Sbjct: 70  TKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHV---P 126

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  
Sbjct: 127 PTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLI 186

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LEEM  KG  P++ T+N  +  L   +  +EAL  +  M E+ C P+  TY++LI+    
Sbjct: 187 LEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCR 246

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G   +V TY  MI GL     + +AC L E     G
Sbjct: 247 VQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANG 299



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G +  +EM + G  PD    NT +D   KA  V +   +FE ++  G     P  ++Y+I
Sbjct: 8   GHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFL---PDVRSYSI 64

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L +  +  E  S+   M   G   D   Y  V++G C +GKV++AY+ LEEM  K 
Sbjct: 65  LIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKH 124

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
            PP + TY   +  L      DEA  L+      G   +V  Y+ LI  + ++G  D A+
Sbjct: 125 VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 184

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA--CF 433
               EM K+G A +V T+  ++D L    ++ EA  CF
Sbjct: 185 LILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICF 222



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 114/266 (42%), Gaps = 16/266 (6%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQTL----------EEM 225
           A N ++D  CK G VD A    + +K K V P   TY   I G+  +          EE 
Sbjct: 96  AYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEA 155

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
              G   +   Y++ ID F K   + EA  + E M  KG    +P   T+  ++ ALV+ 
Sbjct: 156 KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGL---APNVYTWNSLMDALVKA 212

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           + + E       M    C P+  TY  ++ G+C   K  +A+ F +EM  +G  P++VTY
Sbjct: 213 EEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTY 272

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  L    N  +A  L+ R    G  P   ++N LI           A+  + E   
Sbjct: 273 TTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRL 332

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEA 431
           RGC  +V     ++D L     +E+A
Sbjct: 333 RGCRINVKACISLLDALNKAECIEQA 358



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 88/191 (46%)

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           + R E+   +   M   GC PD++     ++ +  AG VE+     E++   G+ PD+ +
Sbjct: 2   HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRS 61

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+  +  L       E   ++  M + G     + YN ++  + + G+ D A+E   EM 
Sbjct: 62  YSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMK 121

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            +     V TY  +IDGL    +++EA  L EE  +KG++L    + S +     +G + 
Sbjct: 122 VKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRID 181

Query: 465 AIHKLSDHMRK 475
             + + + M K
Sbjct: 182 EAYLILEEMMK 192


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 134/272 (49%), Gaps = 18/272 (6%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GM 219
           T+P +   + ++D LCK  LV+ A  +   +  + + PN  TYN L              
Sbjct: 146 TRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAF 205

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             L EMI     PD +T++  ID  CK      A  +F  M   G    +P   +Y IMI
Sbjct: 206 SLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGV---NPNVYSYNIMI 260

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +  R++E  +LL  M++   +PD  TY  +++G+C +G++  A   + EM ++G P
Sbjct: 261 NGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQP 320

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            D+VTY   L  LC N+N D+A  L+ +M E G  P++ TY  LI    + G    A E 
Sbjct: 321 ADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQEL 380

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           +  +  +GC  DV TY VMI GL      +EA
Sbjct: 381 FQHLLVKGCCIDVWTYTVMISGLCKEGMFDEA 412



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 137/297 (46%), Gaps = 15/297 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E    +  P +   N L+ A C  G L+     + + +   + P+  T++IL      
Sbjct: 173 YSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCK 232

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 Q    M+QMG  P+ ++YN  I+  CK + V EA +L   M  K      P   
Sbjct: 233 EGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV---PDTV 289

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L ++ R+    +L+  M + G   DV TY  +L+ +C    +++A     +M
Sbjct: 290 TYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKM 349

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P + TY   +  LC       A  L+  ++  GC   V TY ++IS   + G  
Sbjct: 350 KERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMF 409

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           D A     +M+  GC  +  T+ ++I  LF+  + ++A  LL E++ KGL L +R F
Sbjct: 410 DEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL-LGFRNF 465



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 5/242 (2%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+   Y+  ID  CK ++V EA DL+  M  +      P   TY  +I A     ++   
Sbjct: 148 PNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIF---PNVITYNTLICAFCLAGQLMGA 204

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           FSLL  MI     PDV T+  +++ +C  GK   A +    M   G  P++ +YN  +  
Sbjct: 205 FSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMING 262

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC  K  DEA+ L   M+     P   TYN LI    + G    A    +EM  RG   D
Sbjct: 263 LCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPAD 322

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           V TY  ++D L     +++A  L  ++  +G++     + + +  L   G L    +L  
Sbjct: 323 VVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQ 382

Query: 472 HM 473
           H+
Sbjct: 383 HL 384



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 124/323 (38%), Gaps = 71/323 (21%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+ + H      +N  + +  K +       L + M  KG         T +I+I     
Sbjct: 1   MLLVRHTSPIIEFNKILGSLVKLKYYLTVISLSKQMDVKGI---EQNLVTLSILINCFCH 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE------------------- 325
             +M   FSLLG ++  G  P+  T+  +++G+CL G+V++                   
Sbjct: 58  LGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVS 117

Query: 326 ----------------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
                           A K L  + ++   P++V Y+  +  LC +K  +EA  LY  M 
Sbjct: 118 YGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMD 177

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT--------------- 414
               +P+V TYN LI  +   G+  GAF   HEM  +    DV T               
Sbjct: 178 AREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNA 237

Query: 415 ------------------YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
                             Y +MI+GL  C +V+EA  LL E+++K +      ++S +  
Sbjct: 238 KQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDG 297

Query: 457 LSVIGDLGAIHKLSDHMRKFYNP 479
           L   G + +   L + M     P
Sbjct: 298 LCKSGRITSALNLMNEMHHRGQP 320


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 158/348 (45%), Gaps = 46/348 (13%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETIC--KRVKNKVKPNANTYNIL------------GM 219
           +P++   + ++  LCK G V  A  +   K ++     N   YN L              
Sbjct: 110 EPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAY 169

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---------- 269
           + LEEM   G+ PDN TYNT +   C+   V+EA   F+ M ++G +             
Sbjct: 170 KLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL 229

Query: 270 ----------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
                                 P   TY  +++ L +   M+E   +   M+ SGC P+ 
Sbjct: 230 YKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNG 289

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
           +TY  VL G C A KV++A+K LEEM   G  PD+VTYN  L  LC     D+A  L+  
Sbjct: 290 ATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST 349

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M++ GC P + +Y+++++   +  +   A   +  M +R    DV T+ +++DGL    K
Sbjct: 350 MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK 409

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++EA  LL+++   G    Y  +++ +  L   G      +L+  M++
Sbjct: 410 LDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKE 457



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
            P+    N+L+D   K G VD A  + +  V   ++P+  TYN L             M+
Sbjct: 40  SPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAME 99

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTYAIMI 279
             + M + G  PD  TY+T I   CK   VTEA + LF  M  +G    S     Y  +I
Sbjct: 100 LFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGC---SANTVAYNALI 156

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +++ +E  + LL  M + G +PD  TY  +L G+C  GKV EA +F + M ++GY 
Sbjct: 157 NGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYS 216

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+V YN  L  L      DEA++L+  +I  G  P   TYN ++         D A E 
Sbjct: 217 PDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEM 276

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + +M   GCA +  TY +++ G     KV++A  +LEE+   G
Sbjct: 277 FKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIG 319



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 4/242 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G +  E+M+  G +PD   YN  ID + K   V EA  L+E M + G     P+  TY  
Sbjct: 27  GYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGL---EPSIYTYNS 83

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL-EEMGNK 336
           ++ A  +  +M+E   L   M   G  PDV TY  ++ G+C  GKV EA + L  +M  +
Sbjct: 84  LLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIER 143

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G   + V YN  +  LC ++N + A +L   M   G  P   TYN ++S    +G+   A
Sbjct: 144 GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEA 203

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            + +  M  RG + DV  Y  ++D L+   K +EA  L ++V+ KG       ++S L+ 
Sbjct: 204 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLG 263

Query: 457 LS 458
           L+
Sbjct: 264 LA 265



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 36/323 (11%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL------------- 162
           +AYN +I+ L   +   + ++L+  M       +K +VP ++    +             
Sbjct: 150 VAYNALINGLCKDENIERAYKLLEEMA------SKGYVPDNITYNTILSGLCRMGKVSEA 203

Query: 163 KQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILG 218
           KQ+ + +  +   P++ A N LLDAL K G  D A  + K V  K   P+  TYN  +LG
Sbjct: 204 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLG 263

Query: 219 M----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           +          +  ++M+  G AP+  TY+  +   C+A+ V +A  + E M   G+   
Sbjct: 264 LARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAV-- 321

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY I++  L + + +++   L   M+++GC PD+ +Y  VL G+C   KV +A  
Sbjct: 322 -PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 380

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             + M  +   PD+VT+N  +  LC     DEA  L  +M   GC P    YN L++   
Sbjct: 381 LFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLR 440

Query: 389 ELGEPDGAFETWHEMDKRGCAQD 411
           + G    A      M ++G   D
Sbjct: 441 KQGRHIQADRLTQAMKEKGFLSD 463



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 11/254 (4%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +P+ +T+   + +FCK   + +   LFE M   G    SP    Y I+I    +  R++E
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNG---ISPDGIEYNILIDGYAKKGRVDE 61

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              L   M++ G  P + TY  +L   C   K++EA +  + M  KG+ PD+VTY+  + 
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 351 VLCDNKNGDEALR-LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
            LC      EAL  L+ +MIE GC  +   YN LI+   +    + A++   EM  +G  
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            D  TY  ++ GL    KV EA    + + ++G       ++  L  L   G        
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK------- 234

Query: 470 SDHMRKFYNPVIAR 483
           +D   K +  VIA+
Sbjct: 235 TDEAMKLFKDVIAK 248



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P+  T++ VL+  C  GK+ + YK  E+M + G  PD + YN  +         DEA 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           RLY  M+ VG  PS+ TYN L++ + +  +   A E +  M ++G   DV TY  +I GL
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 423 FDCSKVEEAC-FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
               KV EA   L  +++ +G       +++ +  L    ++   +KL + M  K Y P
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVP 182


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 152/348 (43%), Gaps = 51/348 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
            P   + NL++ ALCK   VD A  + + + + K  P+  TY  L             + 
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVL 243

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM   G +P    YN  ID  CK   +T    L + M  KG     P   TY  +I 
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV---PNEVTYNTLIH 300

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA-------------------- 320
            L    ++++  SLL  M++S C+P+  TY  ++ G+                       
Sbjct: 301 GLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL 360

Query: 321 ---------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                          GK EEA     +M  KG  P+IV Y+  +  LC     +EA  + 
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            RMI  GC P+  TY+ L+  +F+ G  + A + W EMDK GC+++   Y V+IDGL   
Sbjct: 421 NRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGV 480

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            +V+EA  +  +++  G+K     + S +  L  IG + A  KL   M
Sbjct: 481 GRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           + M  +P+  ++N  I   CK R V  A ++F  M  +      P   TY  ++  L + 
Sbjct: 179 MNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCL---PDGYTYCTLMDGLCKE 235

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +R++E   LL  M + GC P    Y  +++G+C  G +    K ++ M  KG  P+ VTY
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTY 295

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC     D+A+ L  RM+   C P+  TY  LI+   +      A      M++
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           RG   +   Y V+I GLF   K EEA  L  ++  KG K
Sbjct: 356 RGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK 394



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 181/452 (40%), Gaps = 86/452 (19%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLV---------------CSMLDYMKRNNKVFVP 154
           N +   L++NL+I  L   ++  +   +                C+++D + +  ++   
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERI--- 238

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
            D  +++L +   +      P     N+L+D LCK G L    + +         PN  T
Sbjct: 239 -DEAVLLLDEMQSE---GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVT 294

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L             +  LE M+     P++ TY T I+   K R  T+A  L   M 
Sbjct: 295 YNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSME 354

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +G  ++      Y+++I  L +  + EE  SL   M   GC P++  Y  +++G+C  G
Sbjct: 355 ERGYHLNQ---HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREG 411

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLK------------------------------- 350
           K  EA + L  M   G  P+  TY+  +K                               
Sbjct: 412 KPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYS 471

Query: 351 VLCDNKNG----DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM--- 403
           VL D   G     EA+ ++ +M+ +G  P    Y+ +I     +G  D A + +HEM   
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQ 531

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           ++     DV TY +++DGL     +  A  LL  ++++G        +++L  LS   + 
Sbjct: 532 EEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSN- 590

Query: 464 GAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
                  D  R F   ++ R L    KR R+S
Sbjct: 591 -----SCDKGRSFLEELVVRLL----KRQRVS 613



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 1/211 (0%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-SPTAKTYAIMIVALVQNDRMEECFSL 294
           ++N+ ++      +     + ++++      ++ SP   ++ ++I AL +   ++    +
Sbjct: 150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEV 209

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M    CLPD  TY  +++G+C   +++EA   L+EM ++G  P  V YN  +  LC 
Sbjct: 210 FRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
             +     +L   M   GC P+  TYN LI      G+ D A      M    C  +  T
Sbjct: 270 KGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           Y  +I+GL    +  +A  LL  +  +G  L
Sbjct: 330 YGTLINGLVKQRRATDAVRLLSSMEERGYHL 360



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 16/213 (7%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY----PPDIVTYNCFLKVLCDNKNG 358
           C   V ++  VL  +   G      +F + + N        P+ +++N  +K LC  +  
Sbjct: 144 CKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFV 203

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           D A+ ++  M E  C P   TY  L+    +    D A     EM   GC+     Y V+
Sbjct: 204 DRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVL 263

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM----- 473
           IDGL     +     L++ +  KG       +++ +  L + G L     L + M     
Sbjct: 264 IDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKC 323

Query: 474 -------RKFYNPVIARRLALNQKRVRISLREK 499
                      N ++ +R A +  R+  S+ E+
Sbjct: 324 IPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 168/372 (45%), Gaps = 27/372 (7%)

Query: 92  QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151
           Q EE  A R F  A  +    +  + Y  +ID L         +RL   MLD     N +
Sbjct: 435 QLEE--AHRIFESASERGCNPNS-VTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPI 491

Query: 152 FVPVDVLLMIL--------KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203
                +    +        K Y E I+   +P++  LN  +D + K G V+    I + +
Sbjct: 492 IYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDM 551

Query: 204 KN-KVKPNANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           K+    P+  +Y+IL  G+             + M Q G A D   YN  +D  CK+  V
Sbjct: 552 KSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKV 611

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A ++ E M+ K      PT  TY  ++  L + DR++E + L     + G   +V  Y
Sbjct: 612 DKAYEVLEEMKVKHV---HPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILY 668

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G    G+++EAY  LEEM  KG  P++ T+N  +  L   +  DEAL  +  M E
Sbjct: 669 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKE 728

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
           + C P+  TY++LI+    + + + AF  W EM K+G   +V TY  MI GL     + +
Sbjct: 729 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITD 788

Query: 431 ACFLLEEVVNKG 442
           A  L E     G
Sbjct: 789 AYSLFERFKTNG 800



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 15/276 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + + N +L  L K   VD A T+   +K   KPN +TYNI+              +  
Sbjct: 349 PSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIR 408

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +EM   G  P+  + N  +D  CKA  + EA  +FE    +G    +P + TY  +I  L
Sbjct: 409 DEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERG---CNPNSVTYCSLIDGL 465

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  ++++ + L   M+++G   +   Y  ++    + G+ E+ +K  +EM  +G  PD+
Sbjct: 466 GKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDL 525

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
              N ++  +      ++   ++  M   G  P V++Y++LI    + G+       +  
Sbjct: 526 TLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQA 585

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           M ++G A D   Y  ++DGL    KV++A  +LEE+
Sbjct: 586 MSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEM 621



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 178/425 (41%), Gaps = 79/425 (18%)

Query: 82  DSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS--------------- 126
           D VV VL+  +    +A  FF+ A    +    P AYN ++  LS               
Sbjct: 76  DVVVYVLRSLK-NPSLAAPFFLLASASSSQPLPPDAYNAVLPFLSHDLAALEKVLEEMSH 134

Query: 127 --------------STKYKAKQ----FRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
                         +T  ++++    FR++ +M     R+ K   P     +++    E 
Sbjct: 135 LGYGLPNPACAALVATLVRSRRLEDAFRVIGAM-----RHLKFRPPFSAYTVLIGALAE- 188

Query: 169 IKVKTQPEINALNL------------------LLDALCKCGLVDYAETICKRVKNK-VKP 209
                QPE  AL L                  L+ AL + G ++ A  +   VK   ++P
Sbjct: 189 ---ARQPE-RALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEP 244

Query: 210 NANTYNI------------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +   YN+            +  +   E+   G  PD+ +Y + +   CKA  + EA +LF
Sbjct: 245 DIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELF 304

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M  +      P A  Y  MI+     +R ++ + LL  +   GC+P V ++  +L  +
Sbjct: 305 GQMEAERDV---PCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCL 361

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
               KV+EA    + M  K   P+I TYN  + +LC     +EA ++   M   G +P++
Sbjct: 362 GKKRKVDEALTLFDVM-KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNL 420

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            + N+++    +  + + A   +    +RGC  +  TYC +IDGL    K+++A  L E+
Sbjct: 421 LSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEK 480

Query: 438 VVNKG 442
           +++ G
Sbjct: 481 MLDAG 485



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 122/272 (44%), Gaps = 16/272 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTL---------- 222
           +  A N ++D LCK G VD A  + + +K K V P   TY  +  G+  +          
Sbjct: 594 DARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLF 653

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EE    G   +   Y++ ID F K   + EA  + E M  KG T   P   T+  ++ AL
Sbjct: 654 EEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLT---PNVYTWNSLMDAL 710

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V+ + ++E       M    C P+  TY  ++ G+C   K  +A+ F +EM  +G  P++
Sbjct: 711 VKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNV 770

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  L    N  +A  L+ R    G  P   ++N LI        P  A++ + E
Sbjct: 771 VTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEE 830

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
              RGC  +V T   ++D L     +E+A  +
Sbjct: 831 TRLRGCRLNVKTCISLLDALNKTECLEQAAIV 862



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 147/338 (43%), Gaps = 29/338 (8%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVP-----VDVLLMILKQYTEKIKVKTQ-------PEIN 178
           K ++     ++ D MK++ K  +      +D+L M   +  E  K++ +       P + 
Sbjct: 363 KKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMA-GRVNEAYKIRDEMELAGLFPNLL 421

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEM 225
           ++N+++D LCK   ++ A  I +    +   PN+ TY  L              +  E+M
Sbjct: 422 SVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  GH  +   Y + I  F       +   +++ M  +G         TY   +  + + 
Sbjct: 482 LDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTY---MDCVFKA 538

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             +E+  ++   M + G LPDV +Y  ++ G+  AG+  E     + M  +G+  D   Y
Sbjct: 539 GEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAY 598

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC +   D+A  +   M      P+V TY  ++    ++   D A+  + E   
Sbjct: 599 NAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKS 658

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +G   +V  Y  +IDG     +++EA  +LEE++ KGL
Sbjct: 659 KGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGL 696



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 110/256 (42%), Gaps = 4/256 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             + +  M  +   P    Y   I    +AR    A +L   M+  G  +S P    +  
Sbjct: 160 AFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPL---FTT 216

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ AL +  +ME   +L+  +  S   PD+  Y   ++    AG V+ A+KF  E+   G
Sbjct: 217 LVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHG 276

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD V+Y   + VLC      EA  L+G+M      P    YN +I  Y      D A+
Sbjct: 277 LRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAY 336

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +    + +RGC   V ++  ++  L    KV+EA  L  +V+ K  K     ++  +  L
Sbjct: 337 KLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLF-DVMKKDAKPNISTYNIIIDML 395

Query: 458 SVIGDLGAIHKLSDHM 473
            + G +   +K+ D M
Sbjct: 396 CMAGRVNEAYKIRDEM 411


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 158/362 (43%), Gaps = 44/362 (12%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  +FF WA  + NY H+   Y  +I  L   +    Q+  +  M+  M RN        
Sbjct: 105 VKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVE----QYGEMWKMIQEMVRN-------- 152

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
                       I V T  E   L+ ++  L    +V  A  I  ++K  K +P A  YN
Sbjct: 153 -----------PICVVTPTE---LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYN 198

Query: 216 ILGMQTLEE------------MIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            + +  + E            M   GH  PD  TY+  I  FCK      A  L   M+ 
Sbjct: 199 SMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKD 258

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     PT K Y +++    + + +    SL   M +  C PDV TY E++ G+  AG+
Sbjct: 259 NGM---QPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGR 315

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EAY F  EM  +G  PD +  N  +  L      D+A++L+  M  + C PSV TYN 
Sbjct: 316 IDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNT 375

Query: 383 LISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +I   FE         +W E M + G +    TY ++IDG    +++E+A  LLEE+  K
Sbjct: 376 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 435

Query: 442 GL 443
           G 
Sbjct: 436 GF 437



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 8/200 (4%)

Query: 279 IVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +V ++ N +M  +  ++   +    C P    Y  ++  +   G+ E+ ++   EM  +G
Sbjct: 165 VVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEG 224

Query: 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           +  PD +TY+  +   C     D A++L   M + G  P+ + Y ML++++F+L +  GA
Sbjct: 225 HCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGA 284

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + EM  + C  DV TY  +I GL    +++EA     E+  +G +      D+ +M 
Sbjct: 285 LSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP-----DTIVMN 339

Query: 457 LSVIGDLGAIHKLSDHMRKF 476
            ++I  LG   +L D M+ F
Sbjct: 340 -NMINFLGKAGRLDDAMKLF 358


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 137/283 (48%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------GM-----QT 221
           P   A   L+  LC     D A E      +    P+  TYN++       GM       
Sbjct: 43  PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDL 102

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++MI+ GH PD  TYNT +D  CK+  V EA  LF  M   G T   P  +++  +I+ 
Sbjct: 103 IKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCT---PNRRSHNTIILG 159

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q  ++++   +   M      PD  +Y  +++G+  AGK+ EAYK    M + G  P 
Sbjct: 160 LCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPS 219

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +  +C     DEAL L+  M   GC PS  T+N+LI  + + G+ D AF    
Sbjct: 220 AVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLK 279

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            M   G   DV TY  +I GL   ++V++A  LLE++V +  K
Sbjct: 280 RMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 322



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 141/291 (48%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E  ++   P   + N ++  LC+   +D A  +   ++ + + P++ +Y IL      
Sbjct: 138 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAK 197

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +    M+  G  P   TYN  I   C A  + EA +LF+ MR+KG     P+
Sbjct: 198 AGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC---RPS 254

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ I+I A  +  +M+E F LL  M + G +PDV TY  ++ G+C   +V++A   LE
Sbjct: 255 RFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  +   P +VT N  +  LC      EA  +   M+  G  P V TYN L+  +   G
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + A E   +M  RG A +V TY  ++ GL   +++ EAC +  ++ + G
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN--ILGM----------QT 221
           P++   N ++D LCK G V+ A  +   ++     PN  ++N  ILG+          Q 
Sbjct: 113 PDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQV 172

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM      PD+++Y   ID   KA  + EA  LF  M   G T   P+A TY ++I  
Sbjct: 173 FHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGIT---PSAVTYNVVIHG 229

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           +     ++E   L   M + GC P   T+  +++  C  GK++EA++ L+ M + G+ PD
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPD 289

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY+  +  LC     D+A  L   M++  C P+V T N LI    + G    A E   
Sbjct: 290 VVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 349

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M   G + DV TY  ++ G     + E A  LL ++V +GL
Sbjct: 350 AMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 391



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--GM---QTLEEMIQM 228
           P+  +  +L+D L K G ++ A  + +R + + + P+A TYN++  GM    TL+E +++
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G  P  FT+N  ID  CK   + EA  L + M   G     P   TY+ +I  
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV---PDVVTYSTLISG 299

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R+++   LL  M+   C P V T   ++ G+C AG+++EA + L+ M + G  PD
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +   C     + A  L   M+  G  P+V TY  L+S   +      A   + 
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFA 419

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M   GCA ++ TY  +I G     +V+    L  E+V  G+
Sbjct: 420 QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 461



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 180/420 (42%), Gaps = 52/420 (12%)

Query: 31  GKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDS----VVG 86
           G VP +V   ++   D +    ++ EA++     ++ ME+    LG      S    ++G
Sbjct: 110 GHVPDVV--TYNTVMDGLCKSGRVEEALL----LFNEMER----LGCTPNRRSHNTIILG 159

Query: 87  VLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK 146
           + Q+ + ++       M A    +   +  +Y ++ID L+      + ++L   MLD   
Sbjct: 160 LCQQSKIDQACQVFHEMEA---RDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGI 216

Query: 147 RNNKVFVPVDVLLMILKQYT--------EKIKVKT-QPEINALNLLLDALCKCGLVDYAE 197
             + V   V +  M L  YT        + ++ K  +P     N+L+DA CK G +D A 
Sbjct: 217 TPSAVTYNVVIHGMCL-AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAF 275

Query: 198 TICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
            + KR                      M   GH PD  TY+T I   C    V +A  L 
Sbjct: 276 RLLKR----------------------MTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 313

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           E M  +      PT  T   +I  L +  R++E   +L  M++SG  PDV TY  ++ G 
Sbjct: 314 EDMVKR---QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C AG+ E A + L +M  +G  P++VTY   +  LC      EA  ++ +M   GC P++
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TY  LI  +   G+ DG  + + EM   G + D   Y  +   L    +   A  +L E
Sbjct: 431 FTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 111/213 (52%), Gaps = 3/213 (1%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +PD+++Y   ID   KA  + +A DLF+ +   G T   P+   Y  +I  L   +  ++
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVT---PSTVAYTSLIHGLCMANSFDD 63

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              L   M   GC P   TY  +++  C  G +EEA   +++M   G+ PD+VTYN  + 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 123

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            LC +   +EAL L+  M  +GC P+ +++N +I    +  + D A + +HEM+ R    
Sbjct: 124 GLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPP 183

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D  +Y ++IDGL    K+ EA  L   +++ G+
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGI 216



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 137/329 (41%), Gaps = 57/329 (17%)

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           +  V P++ +Y IL                 ++++  G  P    Y + I   C A    
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A +LF  M  +G     P+  TY ++I A  +   +EE   L+  MI  G +PDV TY 
Sbjct: 63  DARELFADMNRRG---CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD------------ 359
            V++G+C +G+VEEA     EM   G  P+  ++N  +  LC     D            
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAR 179

Query: 360 -----------------------EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
                                  EA +L+ RM++ G  PS  TYN++I         D A
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFDS 452
            E +  M  +GC     T+ ++ID      K++EA  LL+ + + G  +P    Y    S
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDG-HVPDVVTYSTLIS 298

Query: 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481
            L  ++ + D  A H L D +++   P +
Sbjct: 299 GLCSIARVDD--ARHLLEDMVKRQCKPTV 325



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 18/179 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +     L+  LCK   +  A  +  ++K+    PN  TY  L            G++ 
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--AKTYAIMI 279
             EM+  G +PD+  Y T     CK+     +A   E +R    ++ S     + Y   +
Sbjct: 453 FGEMVCAGISPDHVVYGTLAAELCKS---GRSARALEILREGRESLRSEAWGDEVYRFAV 509

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             L+   +ME     +  M+  G LP       ++ G+C +G+  EA   LEE+ +  Y
Sbjct: 510 DGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAY 568



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   PD  +Y   +  L      ++A  L+ +++  G  PS   Y  LI        
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            D A E + +M++RGC     TY V+ID       +EEAC L+++++  G
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDG 110


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 207/468 (44%), Gaps = 45/468 (9%)

Query: 1   MTLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIID 60
           M L  L S   + + + V  + + +L     KVP       +E  D    V ++    I+
Sbjct: 3   MILKPLSSHHVSNFRLSVSFLHSVALSD--AKVP------VEEEGDDAETVFRM----IN 50

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK---IAFRFFMWAGHQDNYAHEPLA 117
            SN    ++++L S G+ L+ D +  VL+R +F          F+ +A     + H   +
Sbjct: 51  GSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFS 110

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE- 176
            + M+ IL     + ++F  +  +L   KR ++  +    + ++L +  +   V+   E 
Sbjct: 111 LDTMLYILG----RNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVES 166

Query: 177 -------------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------ 217
                            N LL  LC+   +  A  +   +K++ +P+  T+NIL      
Sbjct: 167 FWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKS 226

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                   EEM   G  PD  TYN+ ID +CK R + +A  L + MR +  T   P   T
Sbjct: 227 SEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEET---PDVIT 283

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L    + ++   +L  M   GC PDV+ Y   +   C+A ++ +A K ++EM 
Sbjct: 284 YTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMV 343

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P+  TYN F +VL    +   +  LY RM+   C P+ Q+   LI M+    + D
Sbjct: 344 KKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVD 403

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            A   W +M  +G         V++D L D +KVEEA   L E+V KG
Sbjct: 404 MAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKG 451



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           H +     PD+ T+  +L G       EEA  F EEM  KG  PD+VTYN  + V C ++
Sbjct: 204 HSLKHQFQPDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDR 260

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A +L  +M E    P V TY  +I     +G+PD A E   EM + GC  DV  Y 
Sbjct: 261 EIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYN 320

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
             I       ++ +A  L++E+V KGL      ++ +   LS+  DLG
Sbjct: 321 AAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLG 368



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 16/216 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI----LGM--------Q 220
           +P++   N L+D  CK   ++ A  +  +++ + + P+  TY      LG+        +
Sbjct: 243 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 302

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM + G  PD   YN AI  FC AR + +A  L + M  KG    SP A TY +   
Sbjct: 303 VLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGL---SPNATTYNLFFR 359

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L   + +   + L   M+ + CLP+  +   +++      KV+ A +  E+M  KG+  
Sbjct: 360 VLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGS 419

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
             +  +  L +LCD    +EA +    M+E G  PS
Sbjct: 420 YSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPS 455


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 186/422 (44%), Gaps = 28/422 (6%)

Query: 41  FDESSDSVSDVAKLYEAI-IDNSN-AYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
           F   +D V+ + +  + + +D S+ +  N+   L  +   +    V  VL+  +     A
Sbjct: 44  FVRRADLVTSIVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVT-GTA 102

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
             FF WAG Q  + H+   YN ++++L + K  ++ + +   ML      N     + + 
Sbjct: 103 ISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIR 162

Query: 159 LMILKQYTEKI--------KVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKP 209
                +  +          + + +P+++   +L+D LCK G+ + A E   + +     P
Sbjct: 163 SFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP 222

Query: 210 NANTYNILGMQTL-------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
                +   ++TL              +M + G  PD   YNT ID   KA    EA  +
Sbjct: 223 PDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKV 282

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            + M  K      PT  TY I++ +L +   +E    L   M  SG  P+   Y  ++ G
Sbjct: 283 LDNMLAKACV---PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHG 339

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              +G+++EA    +EM   GY PD++T+   +  LC + N ++A + +  M+  GC P+
Sbjct: 340 FAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPN 399

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TY  +I    ++G    AF     M   GC  D  TY  ++DG     +++EA  LL+
Sbjct: 400 VVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLD 459

Query: 437 EV 438
           E+
Sbjct: 460 EL 461



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 154/363 (42%), Gaps = 55/363 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           + E ++   +P++    +++D LCK G     A++  + ++   KPN  TY  +      
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + ++ MI  G  PD+ TY   +D FCK   + EAA L + +       SSP 
Sbjct: 413 IGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELD---KCSSSPN 469

Query: 272 AKTYAIM------------------------------------IVALVQNDRMEECFSLL 295
            + Y+ +                                    IV L +  R++E   + 
Sbjct: 470 LQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIF 529

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLA--GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
             M++ GC PD +TY  ++ G+C +   +VE A+  L ++   GY PD VTY      LC
Sbjct: 530 QRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLC 589

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                D A+++       G    V  Y  L +     G+ D A   + EM ++G A D  
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAA 649

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDH 472
            YC +I+GL    K+E+AC   +E++ KG K     + + +  L   G++  A H+    
Sbjct: 650 AYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESM 709

Query: 473 MRK 475
           + +
Sbjct: 710 LAR 712



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 129/300 (43%), Gaps = 19/300 (6%)

Query: 186 ALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------------GMQTLEEMIQMGH 230
            LCK G +D A  I +R V    KP+A TYNIL                  L ++ ++G+
Sbjct: 515 GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGY 574

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            PD  TY       CK   V  A  + E   ++G    +     Y  +   L    +++ 
Sbjct: 575 LPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGW---NADVVAYTALCTGLCYQGQVDR 631

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             SL   M+  G  PD + Y  ++ G+    K+E+A KF +EM  KG  P + TY   ++
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 351 VLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
            LC   N DEA   +  M+  G    SV  Y+ LI  + +  + D A + + +M  RG  
Sbjct: 692 ALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNV 751

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
               T   + DGL    K E+A  LL+E+   G       F + L  L    + G + KL
Sbjct: 752 PTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKL 811



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 19/276 (6%)

Query: 183 LLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM-------QTLEEMIQMGHAP 232
           LLD  CK G +D A  +   + K    PN   Y+ L  G+       +TL+++ +   A 
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAA 500

Query: 233 ----DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN--D 286
               D     + I   CK   + EA  +F+ M ++G     P A TY I+I  L ++  +
Sbjct: 501 AETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC---KPDATTYNILINGLCRSREN 557

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+E  F+LL  +   G LPD  TY  +  G+C  G+V+ A K LEE  ++G+  D+V Y 
Sbjct: 558 RVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYT 617

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                LC     D A+ L+  M+  G  P    Y  +I+   ++ + + A + + EM  +
Sbjct: 618 ALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGK 677

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G    V TY  ++  L     V+EA    E ++ +G
Sbjct: 678 GQKPTVATYTALVQALCHAGNVDEAFHRFESMLARG 713



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 18/202 (8%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTY-----NILGMQTLE------ 223
           ++ A   L   LC  G VD A ++ +  V+    P+A  Y      ++ ++ LE      
Sbjct: 612 DVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFF 671

Query: 224 -EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EMI  G  P   TY   +   C A  V EA   FE M  +G  + S     Y  +I   
Sbjct: 672 DEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGS--VMIYDALIHGF 729

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  +++    L   MI+ G +P   T   + +G+  +GK E+A + L+EM   G PP  
Sbjct: 730 CKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHA 789

Query: 343 VTYNCFLKVLCDNKNGDEALRL 364
            T+   L  L   +  DE+ +L
Sbjct: 790 ATFTAILDGL---RKSDESGKL 808



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 17/229 (7%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL----------- 217
           KV   P+      L   LCK G VD A  + +   ++    +   Y  L           
Sbjct: 571 KVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +   +EM++ G APD   Y   I+   K + + +A   F+ M  KG     PT  TY 
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQ---KPTVATYT 687

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            ++ AL     ++E F     M+  G L   V  Y  ++ G C A KV+ A K  E+M +
Sbjct: 688 ALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMIS 747

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +G  P  VT       L  +   ++A  L   M   G  P   T+  ++
Sbjct: 748 RGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAIL 796



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 71/242 (29%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSG------------------------------- 302
           TY  ++  LV      +C+++   M+ +G                               
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180

Query: 303 ----CLPDVSTYKEVLEGMCLAG------------------------------------K 322
               C PD+ T+  +++ +C AG                                    +
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKR 240

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V+EA +   +M   G+PPD + YN  +  L    +  EAL++   M+   C P+  TY +
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L++   + G  + A E +  M   G   +   Y  +I G     +++EAC L +E+V  G
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 443 LK 444
            +
Sbjct: 361 YR 362



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A  F    G + G+  D+ TYNC + +L   KN  +   ++  M++ G  P+  ++N+LI
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILI 161

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +      D A   +  M ++ C  D+ T+ +++D L      E+A  +  E++  G  
Sbjct: 162 RSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFV 221

Query: 445 LPYRKFDSYLMQ 456
            P R   + +++
Sbjct: 222 PPDRALHTAMVR 233


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 186/422 (44%), Gaps = 28/422 (6%)

Query: 41  FDESSDSVSDVAKLYEAI-IDNSN-AYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
           F   +D V+ + +  + + +D S+ +  N+   L  +   +    V  VL+  +     A
Sbjct: 44  FVRRADLVTSIVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVT-GTA 102

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
             FF WAG Q  + H+   YN ++++L + K  ++ + +   ML      N     + + 
Sbjct: 103 ISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIR 162

Query: 159 LMILKQYTEKI--------KVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKP 209
                +  +          + + +P+++   +L+D LCK G+ + A E   + +     P
Sbjct: 163 SFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP 222

Query: 210 NANTYNILGMQTL-------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
                +   ++TL              +M + G  PD   YNT ID   KA    EA  +
Sbjct: 223 PDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKV 282

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            + M  K      PT  TY I++ +L +   +E    L   M  SG  P+   Y  ++ G
Sbjct: 283 LDNMLAKACV---PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHG 339

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              +G+++EA    +EM   GY PD++T+   +  LC + N ++A + +  M+  GC P+
Sbjct: 340 FAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPN 399

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TY  +I    ++G    AF     M   GC  D  TY  ++DG     +++EA  LL+
Sbjct: 400 VVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLD 459

Query: 437 EV 438
           E+
Sbjct: 460 EL 461



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 152/357 (42%), Gaps = 55/357 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           + E ++   +P++    +++D LCK G     A++  + ++   KPN  TY  +      
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + ++ MI  G  PD+ TY   +D FCK   + EAA L + +       SSP 
Sbjct: 413 IGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELD---KCSSSPN 469

Query: 272 AKTYAIM------------------------------------IVALVQNDRMEECFSLL 295
            + Y+ +                                    IV L +  R++E   + 
Sbjct: 470 LQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIF 529

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLA--GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
             M++ GC PD +TY  ++ G+C +   +VE A+  L ++   GY PD VTY      LC
Sbjct: 530 QRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLC 589

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                D A+++       G    V  Y  L +     G+ D A   + EM ++G A D  
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAA 649

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKL 469
            YC +I+GL    K+E+AC   +E++ KG K     + + +  L   G++  A H+ 
Sbjct: 650 AYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 128/300 (42%), Gaps = 19/300 (6%)

Query: 186 ALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------------GMQTLEEMIQMGH 230
            LCK G +D A  I +R V    KP+A TYNIL                  L ++  +G+
Sbjct: 515 GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGY 574

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            PD  TY       CK   V  A  + E   ++G    +     Y  +   L    +++ 
Sbjct: 575 LPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGW---NADVVAYTALCTGLCYQGQVDR 631

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             SL   M+  G  PD + Y  ++ G+    K+E+A KF +EM  KG  P + TY   ++
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 351 VLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
            LC   N DEA   +  M+  G    SV  Y+ LI  + +  + D A + + +M  RG  
Sbjct: 692 ALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNV 751

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
               T   + DGL    K E+A  LL+E+   G       F + L  L    + G + KL
Sbjct: 752 PTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKL 811



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 19/276 (6%)

Query: 183 LLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM-------QTLEEMIQMGHAP 232
           LLD  CK G +D A  +   + K    PN   Y+ L  G+        TL+++ +   A 
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAA 500

Query: 233 ----DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN--D 286
               D     + I   CK   + EA  +F+ M ++G     P A TY I+I  L ++  +
Sbjct: 501 AENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC---KPDATTYNILINGLCRSREN 557

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+E  F+LL  +   G LPD  TY  +  G+C  G+V+ A K LEE  ++G+  D+V Y 
Sbjct: 558 RVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYT 617

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                LC     D A+ L+  M+  G  P    Y  +I+   +  + + A + + EM  +
Sbjct: 618 ALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGK 677

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G    V TY  ++  L     V+EA    E ++ +G
Sbjct: 678 GQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 137/324 (42%), Gaps = 33/324 (10%)

Query: 65  YDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDI 124
           ++  + A ++L   L    +VG+ +  + +E  A R F      +    +   YN++I+ 
Sbjct: 494 FEQSKAAAENLDPGLCCSIIVGLCKTGRLDE--ACRIFQRM-VSEGCKPDATTYNILING 550

Query: 125 LSSTKYK--AKQFRLV--CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP----- 175
           L  ++     + F L+    M+ Y+  +   + P+ + L  + +    +K+  +      
Sbjct: 551 LCRSRENRVERAFALLHDLEMVGYLP-DAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGW 609

Query: 176 --EINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTY-----NILGMQTLE---- 223
             ++ A   L   LC  G VD A ++ +  V+    P+A  Y      ++  + LE    
Sbjct: 610 NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACK 669

Query: 224 ---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EMI  G  P   TY   +   C A  V EA   FE M  +G  + S     Y  +I 
Sbjct: 670 FFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGS--VMIYDALIH 727

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  +++    L   MI+ G +P   T   + +G+  +GK E+A + L+EM   G PP
Sbjct: 728 GFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787

Query: 341 DIVTYNCFLKVLCDNKNGDEALRL 364
              T+   L  L   +  DE+ +L
Sbjct: 788 HAATFTAILDGL---RKSDESGKL 808



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 17/224 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQT 221
           P+      L   LCK G VD A  + +   ++    +   Y  L             +  
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM++ G APD   Y   I+   K + + +A   F+ M  KG     PT  TY  ++ A
Sbjct: 636 FQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQ---KPTVATYTALVQA 692

Query: 282 LVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           L     ++E F     M+  G L   V  Y  ++ G C A KV+ A K  E+M ++G  P
Sbjct: 693 LCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVP 752

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
             VT       L  +   ++A  L   M   G  P   T+  ++
Sbjct: 753 TAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAIL 796



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 71/242 (29%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSG------------------------------- 302
           TY  ++  LV      +C+++   M+ +G                               
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180

Query: 303 ----CLPDVSTYKEVLEGMCLAG------------------------------------K 322
               C PD+ T+  +++ +C AG                                    +
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKR 240

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V+EA +   +M   G+PPD + YN  +  L    +  EAL++   M+   C P+  TY +
Sbjct: 241 VKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGI 300

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L++   + G  + A E +  M   G   +   Y  +I G     +++EAC L +E+V  G
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 443 LK 444
            +
Sbjct: 361 YR 362



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A  F    G + G+  D+ TYNC + +L   KN  +   ++  M++ G  P+  ++N+LI
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILI 161

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +      D A   +  M ++ C  D+ T+ +++D L      E+A  +  E++  G  
Sbjct: 162 RSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFV 221

Query: 445 LPYRKFDSYLMQ 456
            P R   + +++
Sbjct: 222 PPDRALHTAMVR 233


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 207/468 (44%), Gaps = 45/468 (9%)

Query: 1   MTLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIID 60
           M L  L S   + + + V  + + +L     KVP       +E  D    V ++    I+
Sbjct: 2   MILKPLSSHHVSNFRLSVSFLHSVALSD--AKVP------VEEEGDDAETVFRM----IN 49

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK---IAFRFFMWAGHQDNYAHEPLA 117
            SN    ++++L S G+ L+ D +  VL+R +F          F+ +A     + H   +
Sbjct: 50  GSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFS 109

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE- 176
            + M+ IL     + ++F  +  +L   KR ++  +    + ++L +  +   V+   E 
Sbjct: 110 LDTMLYILG----RNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVES 165

Query: 177 -------------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------ 217
                            N LL  LC+   +  A  +   +K++ +P+  T+NIL      
Sbjct: 166 FWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKS 225

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                   EEM   G  PD  TYN+ ID +CK R + +A  L + MR +  T   P   T
Sbjct: 226 SEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEET---PDVIT 282

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L    + ++   +L  M   GC PDV+ Y   +   C+A ++ +A K ++EM 
Sbjct: 283 YTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMV 342

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P+  TYN F +VL    +   +  LY RM+   C P+ Q+   LI M+    + D
Sbjct: 343 KKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVD 402

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            A   W +M  +G         V++D L D +KVEEA   L E+V KG
Sbjct: 403 MAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKG 450



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           H +     PD+ T+  +L G       EEA  F EEM  KG  PD+VTYN  + V C ++
Sbjct: 203 HSLKHQFQPDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDR 259

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A +L  +M E    P V TY  +I     +G+PD A E   EM + GC  DV  Y 
Sbjct: 260 EIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYN 319

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
             I       ++ +A  L++E+V KGL      ++ +   LS+  DLG
Sbjct: 320 AAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLG 367



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 16/216 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI----LGM--------Q 220
           +P++   N L+D  CK   ++ A  +  +++ + + P+  TY      LG+        +
Sbjct: 242 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 301

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM + G  PD   YN AI  FC AR + +A  L + M  KG    SP A TY +   
Sbjct: 302 VLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGL---SPNATTYNLFFR 358

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L   + +   + L   M+ + CLP+  +   +++      KV+ A +  E+M  KG+  
Sbjct: 359 VLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGS 418

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
             +  +  L +LCD    +EA +    M+E G  PS
Sbjct: 419 YSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPS 454


>gi|116787233|gb|ABK24422.1| unknown [Picea sitchensis]
          Length = 504

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 179/416 (43%), Gaps = 46/416 (11%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
            +E  L+ LG+ ++   V  VL+        A +FF WAG + +  H PLA+NL++D+L 
Sbjct: 64  GIENTLNGLGLGVSIKFVEDVLKLSYGAGMEAMKFFRWAGLKLSSKHSPLAWNLLVDLLG 123

Query: 127 STKYKAKQFRLVCSMLDYMK-RNNKVFVPVDVLLMILKQYTEKIKVKT------------ 173
           S K       L  +M D +K   N+  V  + L  +   Y +  KV              
Sbjct: 124 SDK-------LFDAMWDCIKIMKNQGIVSTETLSSVFGNYVQAGKVDEARMTFEVMEQYG 176

Query: 174 -QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
            + ++ ALN  + ALC+   V  A      VK ++ P+A+TY +L               
Sbjct: 177 CRQDVVALNCYISALCRYKQVKAALEFFDSVKERIAPDADTYALLLEGWEIEGNVSNARS 236

Query: 221 TLEEMI-QMGHAPDNFT-YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           T  EMI ++G  P+N + YN  + T      V EA      M+TK      P    +   
Sbjct: 237 TFGEMIARLGWMPNNTSAYNAFLSTLVNGFQVDEALKYLGVMKTKKCL---PDLGFFRNT 293

Query: 279 IVALVQNDRMEECF------SLLGHMINSGCLPDVSTYKEVLEGMCLAG--KVEEAYKFL 330
           +  L Q   M+E +      SL   M  SG +PD+ TY  ++   C A   +V  AY  L
Sbjct: 294 LQILYQRKAMKEPYGLWQLMSLWEFMRQSGIVPDLPTYNTMIGVCCSANPIQVNSAYSLL 353

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           +EM   G  PD  TYN   +     +  +EA  ++  M +    P    Y M I MYFE 
Sbjct: 354 DEMALTGAFPDSKTYNTIFEAFITARKVEEASSIFREMTKNEFCPLYANYVMAIKMYFEA 413

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            + + A   W  M ++      D   ++IDG  D  +V  A     E + +G+++P
Sbjct: 414 DDSEMAVMMWRHMIQKAIFPKSDCAAILIDGFLDLGRVSAALKYSLEAITRGVQIP 469


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 46/387 (11%)

Query: 133 KQFRLVCSMLDYMKRNNKVFVPVD-----VLLMILKQ---------YTEKIKVKTQPEIN 178
           K F ++C M+      +K FVP D     V+  +            + E  K    P + 
Sbjct: 436 KAFEIICEMM------SKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVY 489

Query: 179 ALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
              +L+D+ CK GL+  A     + +++   PN  TY  L              +  E M
Sbjct: 490 TYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMM 549

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMV-------------TEAADLFEFMRTKGSTISSPTA 272
           +  G  P+  TY   ID  CKA  +              E++D+  + +   +   +P  
Sbjct: 550 LLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNI 609

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  ++  L + +R+EE   LL  M  +GC P+   Y  +++G C  GK+E A +   +
Sbjct: 610 ITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVK 669

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +GY P++ TY+  +  L   K  D  L++  +M+E  C P+V  Y  +I    ++G+
Sbjct: 670 MSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGK 729

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            + A+    +M++ GC  +V TY  MIDG     K+E+   L  ++ +KG    +  +  
Sbjct: 730 TEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRV 789

Query: 453 YLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +      G L   H+L D M++ Y P
Sbjct: 790 LINHCCSTGLLDEAHRLLDEMKQTYWP 816



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 128/289 (44%), Gaps = 22/289 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+    N ++  LC+  L   A  I  R+++    PN  TY IL              + 
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRI 329

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M+  G  P+   +N+ +  +CK+R  + A  LF+ M   G     P    Y I I +
Sbjct: 330 LSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGC---QPGYLLYNIFIGS 386

Query: 282 LVQN------DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +  N      D +E        M++ G + +          +C AGK ++A++ + EM +
Sbjct: 387 ICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMS 446

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG+ PD  TY+  +  LCD    ++A  L+  M + G  PSV TY +LI  + + G    
Sbjct: 447 KGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQ 506

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           A   + EM +  C  +V TY  +I       KV +A  L E ++ +G K
Sbjct: 507 ARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSK 555



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 139/345 (40%), Gaps = 28/345 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G ++ A E   K  +    PN  TY+ L             ++
Sbjct: 641 EPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLK 700

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++    P+   Y   ID  CK     EA  L   M   G     P   TY  MI 
Sbjct: 701 VLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCY---PNVITYTAMID 757

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++E+C  L   M + GC P+  TY+ ++   C  G ++EA++ L+EM    +P 
Sbjct: 758 GFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPR 817

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            I +Y   ++    N+    ++ L   + E    P    Y +LI  + + G  +GA    
Sbjct: 818 HISSYRKIIEGF--NREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLL 875

Query: 401 HEMDKRGCAQDVDTY--CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            E+         + Y    +I+ L   SKV++A  L   ++NK +      F   +  L+
Sbjct: 876 EEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLT 935

Query: 459 VIGDLGAIHKLSDHM--------RKFYNPVIARRLALNQKRVRIS 495
            +G      +LSD +          F N    R L L  K   IS
Sbjct: 936 RVGKWQEALQLSDSICQMVCHVCSNFVNYKTTRALPLCIKHFLIS 980



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 118/278 (42%), Gaps = 20/278 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P I     L+D LCK   V+ A  +   +  N  +PN   Y+ L              + 
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +M + G+ P+ +TY++ I++  K + +     +   M     T   P    Y  MI  
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCT---PNVVIYTDMIDG 723

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  + EE + L+  M   GC P+V TY  +++G    GK+E+  +   +M +KG  P+
Sbjct: 724 LCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPN 783

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETW 400
            +TY   +   C     DEA RL   M +   WP  + +Y  +I  +    E   +    
Sbjct: 784 FITYRVLINHCCSTGLLDEAHRLLDEMKQTY-WPRHISSYRKIIEGFNR--EFITSIGLL 840

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            E+ +         Y ++ID      ++E A  LLEE+
Sbjct: 841 DELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEI 878



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 130/329 (39%), Gaps = 55/329 (16%)

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF+WA  Q  Y+H P+ YN +I++L             C+ ++  + ++K        LM
Sbjct: 119 FFLWASRQIGYSHTPVVYNALIELL------------CCNAVNNDRVSHK-------FLM 159

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
            ++    ++  K       LN L+   C+ G+ + A                      ++
Sbjct: 160 QIRDDDRELLRKL------LNFLIQKCCRNGMWNVA----------------------LE 191

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  +   G+     TYN  I  F +A  +  A  +   M   G  +   T   +A    
Sbjct: 192 ELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFA---Y 248

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L +  R  +  SLL        +PD   Y  ++ G+C A   +EA   L+ M +    P
Sbjct: 249 SLCKAGRCGDALSLLE---KEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIP 305

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTY   L             R+   M+  GC+P+ + +N L+  Y +  +   A++ +
Sbjct: 306 NVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLF 365

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
            +M K GC      Y + I  +  CS  E
Sbjct: 366 KKMIKCGCQPGYLLYNIFIGSI--CSNEE 392



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 20/231 (8%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTEKI 169
           Y  MID L       + +RL+  M +     N +        F  +  +   L+ Y +  
Sbjct: 717 YTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMC 776

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA-----------NTYNILG 218
                P      +L++  C  GL+D A  +   +K    P             N   I  
Sbjct: 777 SKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITS 836

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L+E+ +    P    Y   ID F KA  +  A +L E + +  S ++      Y  +
Sbjct: 837 IGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPS-LAVANKYLYTSL 895

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           I +L    ++++ F L   MIN   +P++ST+  +++G+   GK +EA + 
Sbjct: 896 IESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQL 946



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 103/259 (39%), Gaps = 45/259 (17%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL- 217
           ++LK  ++ ++    P +     ++D LCK G  + A  +  +++     PN  TY  + 
Sbjct: 697 LVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMI 756

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF--------- 257
                       ++   +M   G AP+  TY   I+  C   ++ EA  L          
Sbjct: 757 DGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWP 816

Query: 258 ---------------EFMRTKG------STISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
                          EF+ + G         S P    Y I+I   ++  R+E   +LL 
Sbjct: 817 RHISSYRKIIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLE 876

Query: 297 HMINSGCLPDVSTY--KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
            + +S  L   + Y    ++E +  A KV++A++    M NK   P++ T+   +K L  
Sbjct: 877 EISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTR 936

Query: 355 NKNGDEALRLYGRMIEVGC 373
                EAL+L   + ++ C
Sbjct: 937 VGKWQEALQLSDSICQMVC 955



 Score = 45.1 bits (105), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 90/249 (36%), Gaps = 4/249 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q+G++     YN  I+  C    V       +F+            K    +I    +N 
Sbjct: 126 QIGYSHTPVVYNALIELLC-CNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNG 184

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
                   LG + + G     +TY  +++    A K++ A+    EM N G+  D  T  
Sbjct: 185 MWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLG 244

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
           CF   LC      +AL L  +   V   P    YN ++S   E      A +    M   
Sbjct: 245 CFAYSLCKAGRCGDALSLLEKEEFV---PDTVFYNRMVSGLCEASLFQEAMDILDRMRSI 301

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
            C  +V TY +++ G     ++     +L  ++ +G       F+S +       D    
Sbjct: 302 SCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYA 361

Query: 467 HKLSDHMRK 475
           +KL   M K
Sbjct: 362 YKLFKKMIK 370


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 209/473 (44%), Gaps = 72/473 (15%)

Query: 67  NMEKALDSLG----VPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNL 120
           +ME  LD       + L+ + V  VL+  +  EK  IA+ FF W+  Q  Y H    Y  
Sbjct: 98  SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 157

Query: 121 MIDILS-----------STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
           ++D+L+           S++ K  +F +  S  + + ++      V+ LL + ++  E  
Sbjct: 158 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKEN- 216

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217
               +P +   N L++ L     VD AE + + +++ ++KP+  TYN +           
Sbjct: 217 --GIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 274

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             M+ L +M   GH  D  TY T I              L++ M  KG  +  P A  ++
Sbjct: 275 KAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQV-PPHA--FS 331

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++I  L +  ++ E +++  +MI  G  P+V+ Y  +++G   +G VE+A + L  M ++
Sbjct: 332 LVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDE 391

Query: 337 GYPPDIVTYNCFLKVLCDN---------------------------------KNG--DEA 361
           G+ PD+VTY+  +  LC N                                 K G  DEA
Sbjct: 392 GFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEA 451

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRGCAQDVDTYCVMID 420
            RL+  M E GC      YN LI  + +  + D A   +  M ++ GC Q V TY +++ 
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLS 511

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G+F   + EEA  L + +++KG+      F +    L + G +    K+ D +
Sbjct: 512 GMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDEL 564



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 25/219 (11%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           L+D L K G VD AE +                       EEM + G   D++ YN  ID
Sbjct: 438 LIDGLGKAGRVDEAERL----------------------FEEMSEKGCTRDSYCYNALID 475

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            F K R V EA  LF+ M  +       T  TY I++  + +  R EE   L   MI+ G
Sbjct: 476 AFTKHRKVDEAIALFKRMEEEEGC--DQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKG 533

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P  + ++ +  G+CL+GKV  A K L+E+   G   D    +  +  LC      EA 
Sbjct: 534 ITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEAC 592

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +L   + E G     +   ++I+   ++G+ D A +  H
Sbjct: 593 KLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMH 631



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 1/177 (0%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           VS    +++     G VEE      +M   G  P + TYN  +  L      D A R++ 
Sbjct: 187 VSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFE 246

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M      P + TYN +I  Y + G+   A E   +M+ RG   D  TY  MI   +  S
Sbjct: 247 VMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADS 306

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNPVIA 482
                  L +E+  KG+++P   F   +  L   G L   + + ++M RK   P +A
Sbjct: 307 DFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVA 363


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 16/290 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E + +   P I   +LL++  CK G V  A  + K +    V+PN  TY+ L        
Sbjct: 322 EMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQA 381

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  + MI  G  PD F+YN  I+ +CKA+ + EA  LF  M  +G T   P   
Sbjct: 382 EVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLT---PDIV 438

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I  L Q  R+ E   L  +M+ +G LPD+ TY  +L+G C  G + +A++    M
Sbjct: 439 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 498

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    P++V YN  +  +C ++N  EA +L+  +   G  P+VQ Y  +I+   + G  
Sbjct: 499 QSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLL 558

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A E +  M++ GC  +  +Y V+I G         A  L+ E+  KG 
Sbjct: 559 DEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGF 608



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 25/305 (8%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
           IK+  Q  I   N L++ LCK G    A                      ++  ++M+  
Sbjct: 184 IKLGLQLTIVTFNTLINGLCKVGKFGQA----------------------VELFDDMVAR 221

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G+ PD  TY T I+  CK      AA LF   R  G     P   TY+ +I +L ++ R+
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLF---RKMGEAGCQPDVVTYSTIIDSLCKDRRV 278

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E   +  +M   G  P++ TY  +++G+C   +  EA   L EM +    P+IVT++  
Sbjct: 279 NEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLL 338

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           + + C   N  EA  +   M E+G  P+V TY+ L++ Y    E   A + +  M  +GC
Sbjct: 339 INIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGC 398

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             DV +Y ++I+G     ++ EA  L  E++++GL      +++ +  L  +G L   H 
Sbjct: 399 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 458

Query: 469 LSDHM 473
           L  +M
Sbjct: 459 LFKNM 463



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           QP++   + ++D+LCK   V+ A  I   +K K + PN  TYN L               
Sbjct: 259 QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASA 318

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM+ +   P+  T++  I+ FCK   V EA  + + M   G     P   TY+ ++ 
Sbjct: 319 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGV---EPNVVTYSSLMN 375

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  + E   L   MI  GC PDV +Y  ++ G C A ++ EA +   EM ++G  P
Sbjct: 376 GYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTP 435

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DIV+YN  +  LC      EA  L+  M+  G  P + TY++L+  + + G    AF  +
Sbjct: 436 DIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLF 495

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             M       ++  Y ++ID +     ++EA  L  E+  +GL+
Sbjct: 496 RAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQ 539



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP   T  ++I    Q  R++  FS+L  +I  G    + T+  ++ G+C  GK  +A +
Sbjct: 154 SPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVE 213

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M  +GY PD+ TY   +  LC       A  L+ +M E GC P V TY+ +I    
Sbjct: 214 LFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLC 273

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           +    + A + +  M  +G + ++ TY  +I GL + S+  EA  +L E+++
Sbjct: 274 KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMS 325



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%)

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           SL   M  +G  PD  T   ++       +V+  +  L ++   G    IVT+N  +  L
Sbjct: 143 SLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGL 202

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C      +A+ L+  M+  G  P V TY  +I+   ++GE   A   + +M + GC  DV
Sbjct: 203 CKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDV 262

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            TY  +ID L    +V EA  +   +  KG+      ++S +  L
Sbjct: 263 VTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGL 307



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN-GDEALRLYGRMIEVGCWPSVQTYN 381
           +++A  +   M ++   P I+ +N  L  +   ++  D  + L  +M   G  P   T +
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           MLI+ +F+L   D  F    ++ K G    + T+  +I+GL    K  +A  L +++V +
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G +     + + +  L  IG+  A   L   M
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKM 253


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 207/495 (41%), Gaps = 71/495 (14%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG----VPLTTDSVVGVLQRFQFEEK--I 97
           SS    D +     I++  +   NME  LDS      V L+ + V  VLQ  +  EK  +
Sbjct: 73  SSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEV 132

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSST-----------KYKAKQFRLVCSMLDYMK 146
           A RFF WAG Q  Y H+   +  +I++L+ +           + K +   +  S  + + 
Sbjct: 133 AVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLI 192

Query: 147 RNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-N 205
           ++      V+ LL + ++  E       P +   N L++ L     ++ AE + + +   
Sbjct: 193 KSFGNLGLVEELLWVWRRMKEN---GIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGG 249

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           K+ P+  TYNI+             M+   +M      PD  TY T I      R     
Sbjct: 250 KIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTC 309

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             L+  M  +G  I      +Y+++I  L +  +  E +++   M   GC  +V+ Y  +
Sbjct: 310 LSLYLEMEERGLEIP---PHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTAL 366

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY-------- 365
           ++     G +EEA +  E M N+G+ PD VTY+  +  LC +   D+ + L+        
Sbjct: 367 IDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGV 426

Query: 366 -----------------GR----------MIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
                            GR          M E GC      YN +I    + G+ D A  
Sbjct: 427 AINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALA 486

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +  M++ GC Q V T+ ++IDGLF   K EEA    +++++KG+      F +  + L 
Sbjct: 487 LFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLC 546

Query: 459 VIGDLGAIHKLSDHM 473
           + G +    K+ D +
Sbjct: 547 LCGKVARACKILDDL 561



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 124/253 (49%), Gaps = 4/253 (1%)

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E M Q G   +   Y   ID++ K   + EA  LFE M+ +G     P A TY++++ 
Sbjct: 347 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGF---EPDAVTYSVLVN 403

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R+++   L     N G   +   Y  +++G+  AG++E+A    EEM  KG   
Sbjct: 404 GLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCAR 463

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D   YN  +  L  +   D+AL L+GRM E GC  +V T+ +LI   F+  + + A + W
Sbjct: 464 DSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFW 523

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +M  +G    V ++  +  GL  C KV  AC +L+++   G+ +P   F+  +  L   
Sbjct: 524 DKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKA 582

Query: 461 GDLGAIHKLSDHM 473
             +    KL+D +
Sbjct: 583 QRIKEACKLADGI 595



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 78/187 (41%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   +   M  +G  P + TY  ++ G+  +  +E A K  E M      PD VTYN 
Sbjct: 201 VEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNI 260

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K  C      +A+  +  M      P   TY  LI   +   + D     + EM++RG
Sbjct: 261 MIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERG 320

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
                 +Y ++I GL    K  EA  + E +  KG +     + + +   S  G +    
Sbjct: 321 LEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAM 380

Query: 468 KLSDHMR 474
           +L + M+
Sbjct: 381 RLFERMK 387


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 156/353 (44%), Gaps = 51/353 (14%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           + +   P   + NL++ ALCK G VD A  + + + + K  P+  TY  L          
Sbjct: 179 MNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERI 238

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  L+EM   G +P    YN  ID  CK   ++    L + M  KG     P   TY
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCF---PNEVTY 295

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA--------------- 320
             +I  L    ++++  SLL  M++S C+P+  TY  ++ G+                  
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEE 355

Query: 321 --------------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                               GK EEA    ++M  KG  P+IV Y+  +  LC     +E
Sbjct: 356 RGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNE 415

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  +   MI  GC P+V TY+ L+  +F+ G  + A + W EMD+ GC+++   Y V+ID
Sbjct: 416 AKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLID 475

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           GL    +V+EA  +  +++  G+K     + S +  L  IG + A  KL   M
Sbjct: 476 GLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM 528



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 23/314 (7%)

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAE 197
           C+++D + +  ++    D  +++L +   +      P     N+L+D LCK G L    +
Sbjct: 226 CTLMDGLCKEERI----DEAVLLLDEMQSE---GCSPSPVIYNVLIDGLCKKGDLSRVTK 278

Query: 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
            +         PN  TYN L             +  LE M+     P++ TY T I+   
Sbjct: 279 LVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLV 338

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           K R   + A L   M  +G  ++      Y+++I  L +  + EE  +L   M   GC P
Sbjct: 339 KQRRAMDGARLLISMEERGYRLNQ---HIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRP 395

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           ++  Y  V++G+C  GK  EA + L  M + G  P++ TY+  +K        +EA++++
Sbjct: 396 NIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVW 455

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M E GC  +   Y++LI     +G    A   W +M   G   D   Y  MI GL   
Sbjct: 456 REMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGI 515

Query: 426 SKVEEACFLLEEVV 439
             ++ A  L  E++
Sbjct: 516 GSMDAALKLYHEML 529



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 19/225 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++L+  L K G  + A T+ K++  K  +PN   Y+ +              + L  MI 
Sbjct: 366 SVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMIS 425

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  P+ +TY++ +  F K  +  EA  ++  M   G    S     Y+++I  L    R
Sbjct: 426 SGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGC---SRNEFCYSVLIDGLCGVGR 482

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP---PDIVT 344
           ++E   +   M+  G  PD   Y  +++G+C  G ++ A K   EM  +  P   PD+VT
Sbjct: 483 VKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVT 542

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           YN  L  LC  K+   A+ L   M++ GC P V T N  ++   E
Sbjct: 543 YNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSE 587



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 1/211 (0%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-SPTAKTYAIMIVALVQNDRMEECFSL 294
           ++N+ ++      +     + ++++      ++ SP   ++ ++I AL +   ++    +
Sbjct: 150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEV 209

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M    CLPD  TY  +++G+C   +++EA   L+EM ++G  P  V YN  +  LC 
Sbjct: 210 FRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
             +     +L   M   GC+P+  TYN LI      G+ D A      M    C  +  T
Sbjct: 270 KGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           Y  +I+GL    +  +   LL  +  +G +L
Sbjct: 330 YGTLINGLVKQRRAMDGARLLISMEERGYRL 360



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 19/208 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
           +P I   + ++D LC+ G  + A+ I    + +   PN  TY+ L             +Q
Sbjct: 394 RPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQ 453

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM + G + + F Y+  ID  C    V EA  ++  M T G     P    Y+ MI 
Sbjct: 454 VWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGI---KPDTVAYSSMIK 510

Query: 281 ALVQNDRMEECFSLLGHMI---NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            L     M+    L   M+        PDV TY  +L+G+C+   V  A   L  M ++G
Sbjct: 511 GLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRG 570

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLY 365
             PD++T N FL  L +  +  E  R +
Sbjct: 571 CDPDVITCNTFLNTLSEKSDSCEEGRSF 598



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           ++L+D LC  G V  A                      M    +M+ +G  PD   Y++ 
Sbjct: 471 SVLIDGLCGVGRVKEA----------------------MMVWSKMLTIGIKPDTVAYSSM 508

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I   C    +  A  L+  M  +    S P   TY I++  L     +     LL  M++
Sbjct: 509 IKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLD 568

Query: 301 SGCLPDVSTYKEVLEGMC-LAGKVEEAYKFLEEM 333
            GC PDV T    L  +   +   EE   FLEE+
Sbjct: 569 RGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEEL 602


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 209/473 (44%), Gaps = 72/473 (15%)

Query: 67  NMEKALDSLG----VPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNL 120
           +ME  LD       + L+ + V  VL+  +  EK  IA+ FF W+  Q  Y H    Y  
Sbjct: 80  SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 139

Query: 121 MIDILS-----------STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
           ++D+L+           S++ K  +F +  S  + + ++      V+ LL + ++  E  
Sbjct: 140 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKEN- 198

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217
               +P +   N L++ L     VD AE + + +++ ++KP+  TYN +           
Sbjct: 199 --GIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 256

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             M+ L +M   GH  D  TY T I              L++ M  KG  +  P A  ++
Sbjct: 257 KAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQV-PPHA--FS 313

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++I  L +  ++ E +++  +MI  G  P+V+ Y  +++G   +G VE+A + L  M ++
Sbjct: 314 LVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDE 373

Query: 337 GYPPDIVTYNCFLKVLCDN---------------------------------KNG--DEA 361
           G+ PD+VTY+  +  LC N                                 K G  DEA
Sbjct: 374 GFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEA 433

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRGCAQDVDTYCVMID 420
            RL+  M E GC      YN LI  + +  + D A   +  M ++ GC Q V TY +++ 
Sbjct: 434 ERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLS 493

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G+F   + EEA  L + +++KG+      F +    L + G +    K+ D +
Sbjct: 494 GMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDEL 546



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 25/219 (11%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           L+D L K G VD AE +                       EEM + G   D++ YN  ID
Sbjct: 420 LIDGLGKAGRVDEAERL----------------------FEEMSEKGCTRDSYCYNALID 457

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            F K R V EA  LF+ M  +       T  TY I++  + +  R EE   L   MI+ G
Sbjct: 458 AFTKHRKVDEAIALFKRMEEEEGC--DQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKG 515

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P  + ++ +  G+CL+GKV  A K L+E+   G   D    +  +  LC      EA 
Sbjct: 516 ITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEAC 574

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +L   + E G     +   ++I+   ++G+ D A +  H
Sbjct: 575 KLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMH 613



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 1/177 (0%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           VS    +++     G VEE      +M   G  P + TYN  +  L      D A R++ 
Sbjct: 169 VSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFE 228

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M      P + TYN +I  Y + G+   A E   +M+ RG   D  TY  MI   +  S
Sbjct: 229 VMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADS 288

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNPVIA 482
                  L +E+  KG+++P   F   +  L   G L   + + ++M RK   P +A
Sbjct: 289 DFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVA 345


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 207/495 (41%), Gaps = 71/495 (14%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG----VPLTTDSVVGVLQRFQFEEK--I 97
           SS    D +     I++  +   NME  LDS      V L+ + V  VLQ  +  EK  +
Sbjct: 71  SSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEV 130

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSST-----------KYKAKQFRLVCSMLDYMK 146
           A RFF WAG Q  Y H+   +  +I++L+ +           + K +   +  S  + + 
Sbjct: 131 AVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLI 190

Query: 147 RNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-N 205
           ++      V+ LL + ++  E       P +   N L++ L     ++ AE + + +   
Sbjct: 191 KSFGNLGLVEELLWVWRRMKEN---GIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGG 247

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           K+ P+  TYNI+             M+   +M      PD  TY T I      R     
Sbjct: 248 KIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTC 307

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             L+  M  +G  I      +Y+++I  L +  +  E +++   M   GC  +V+ Y  +
Sbjct: 308 LSLYLEMEERGLEIP---PHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTAL 364

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY-------- 365
           ++     G +EEA +  E M N+G+ PD VTY+  +  LC +   D+ + L+        
Sbjct: 365 IDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGV 424

Query: 366 -----------------GR----------MIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
                            GR          M E GC      YN +I    + G+ D A  
Sbjct: 425 AINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALA 484

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +  M++ GC Q V T+ ++IDGLF   K EEA    +++++KG+      F +  + L 
Sbjct: 485 LFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLC 544

Query: 459 VIGDLGAIHKLSDHM 473
           + G +    K+ D +
Sbjct: 545 LCGKVARACKILDDL 559



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 4/252 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E M Q G   +   Y   ID++ K   + EA  LFE M+ +G     P A TY++++  
Sbjct: 346 FETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGF---EPDAVTYSVLVNG 402

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+++   L     N G   +   Y  +++G+  AG++E+A    EEM  KG   D
Sbjct: 403 LCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARD 462

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  +  L  +   D+AL L+GRM E GC  +V T+ +LI   F+  + + A + W 
Sbjct: 463 SYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWD 522

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M  +G    V ++  +  GL  C KV  AC +L+++   G+ +P   F+  +  L    
Sbjct: 523 KMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKAQ 581

Query: 462 DLGAIHKLSDHM 473
            +    KL+D +
Sbjct: 582 RIKEACKLADGI 593



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 78/187 (41%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   +   M  +G  P + TY  ++ G+  +  +E A K  E M      PD VTYN 
Sbjct: 199 VEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNI 258

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K  C      +A+  +  M      P   TY  LI   +   + D     + EM++RG
Sbjct: 259 MIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERG 318

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
                 +Y ++I GL    K  EA  + E +  KG +     + + +   S  G +    
Sbjct: 319 LEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAM 378

Query: 468 KLSDHMR 474
           +L + M+
Sbjct: 379 RLFERMK 385


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 139/290 (47%), Gaps = 16/290 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           +E +     P +   + +L   C  G  + A ++ K+ V+  V P+  T+NIL       
Sbjct: 141 SEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKE 200

Query: 218 GMQ-----TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           GM        E MI+ G  P+  TYN  +D +C    + EA  LF  M  KG    +P+ 
Sbjct: 201 GMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGC---APSV 257

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           ++Y I+I    ++ R++E   LL  M +    PD  TY  +++G C  G+ ++A K LEE
Sbjct: 258 RSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEE 317

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M + G  PD++TY+  L  LC   + DEA  L   M E    P++  Y +LI      G+
Sbjct: 318 MRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGK 377

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            + A E +  +  +G   DV TY VMI GL       EAC L  ++   G
Sbjct: 378 LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHG 427



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-- 217
           + KQ  E+      P+    N+L+D L K G++  A+ + +  ++  V+PN NTYN L  
Sbjct: 174 LFKQMVER---NVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMD 230

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       +    M++ G AP   +YN  I   CK+  + EA  L   M  K  T 
Sbjct: 231 GYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALT- 289

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY+ ++    Q+ R ++   LL  M + G LPD+ TY  VL+G+C  G ++EA+
Sbjct: 290 --PDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAF 347

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L+ M      P+I  Y   ++ +C+    + A  L+  +   G  P V TY ++IS  
Sbjct: 348 ELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            + G  + A E + +M   GC  +  TY V+I G         A  L+EE+V +G     
Sbjct: 408 LKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADS 467

Query: 448 RKF 450
             F
Sbjct: 468 STF 470



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 147/318 (46%), Gaps = 18/318 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA---ETICKRVKNKVKPNANTYNIL------------G 218
           +P++  L +L++  C      +      +    K  ++PN  T++ L             
Sbjct: 7   RPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDA 66

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++  +EM++MG+ PD  TY+T I+  CK    T A  L + M  KG     P    Y+ +
Sbjct: 67  VKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGC---KPNVVVYSTI 123

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I +L ++  + E    L  M+N G  P+V TY  +L G C  G+  EA    ++M  +  
Sbjct: 124 IDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNV 183

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD VT+N  +  L       EA  ++  MIE G  P+V TYN L+  Y    + D A +
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK 243

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            ++ M ++GCA  V +Y ++I G     +++EA  LL E+ +K L      + + +    
Sbjct: 244 LFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC 303

Query: 459 VIGDLGAIHKLSDHMRKF 476
             G      KL + MR +
Sbjct: 304 QDGRPQDAQKLLEEMRSY 321



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 141/299 (47%), Gaps = 19/299 (6%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL 217
           + +LK+  EK     +P +   + ++D+LCK  L+  A E + + V   + PN  TY+ +
Sbjct: 102 IQLLKKMEEK---GCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSI 158

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                            ++M++    PD  T+N  +D   K  M+ EA  +FE M  KG 
Sbjct: 159 LHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGV 218

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY  ++       +M+E   L   M+  GC P V +Y  +++G C +G+++E
Sbjct: 219 ---EPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDE 275

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A   L EM +K   PD VTY+  +K  C +    +A +L   M   G  P + TY++++ 
Sbjct: 276 AKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLD 335

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              + G  D AFE    M +     ++  Y ++I G+ +  K+E A  L   +  KG++
Sbjct: 336 GLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQ 394



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 17/290 (5%)

Query: 170 KVKTQPEINALNLLLDALC-KCGLVDYAETICKRVKNKVKPNANTYNI------------ 216
           K+  QP     + LL+ L  K  ++D  +   + VK   +P+  TY+             
Sbjct: 40  KLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTT 99

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           + +Q L++M + G  P+   Y+T ID+ CK +++TEA +    M  +G    SP   TY+
Sbjct: 100 MAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGI---SPNVVTYS 156

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++       R  E  SL   M+    +PD  T+  +++G+   G + EA    E M  K
Sbjct: 157 SILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEK 216

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P++ TYN  +   C     DEA +L+  M+  GC PSV++YN+LI  + + G  D A
Sbjct: 217 GVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEA 276

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                EM  +    D  TY  ++ G     + ++A  LLEE+ + GL LP
Sbjct: 277 KGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL-LP 325



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 121/265 (45%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL---------- 217
           I+   +P +N  N L+D  C    +D A+ +    V+    P+  +YNIL          
Sbjct: 214 IEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRI 273

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 L EM      PD  TY+T +  FC+     +A  L E MR+ G     P   TY
Sbjct: 274 DEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLL---PDLMTY 330

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I++  L +   ++E F LL  M  S   P++  Y  +++GMC  GK+E A +    +  
Sbjct: 331 SIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFV 390

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG  PD+VTY   +  L      +EA  L+  M   GC P+  TYN++I  +   G+   
Sbjct: 391 KGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSN 450

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     EM  RG + D  T+ ++ D
Sbjct: 451 AGRLIEEMVGRGFSADSSTFQMLSD 475


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 175/395 (44%), Gaps = 35/395 (8%)

Query: 84  VVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLD 143
           V   L++      +A  FF WA  Q  + +   +Y+ +I+ L     K KQF ++ +++ 
Sbjct: 8   VFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLG----KIKQFNVIWNLVT 63

Query: 144 YMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKC 190
            MK+  K  +  +   +I ++Y    KVK              + E + +N LLD LCK 
Sbjct: 64  DMKQ--KGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKS 121

Query: 191 GLVDYAETICKRV-KNKVKPNANTYNILG------------MQTLEEMIQMGHAPDNFTY 237
             V+ A+ +  ++ K     +  +Y IL             M+   EM   G  PD  TY
Sbjct: 122 RQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTY 181

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
              I+  CK+R   +A +LF  M  K      P+   Y  +I  L    R+ E       
Sbjct: 182 GILINAHCKSRRYDDAIELFHEMEAKNC---KPSPHIYCTLINGLGAEKRLSEALEFFEL 238

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
              SG +P+  TY  V+   C + ++++  + ++EM   G  P   TY+  L  L     
Sbjct: 239 SKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGK 298

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
              A  ++ +M   GC PSV TY +++ M+      D A + W +M  +G    +  +  
Sbjct: 299 TKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFST 358

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
           +I+ L   SK++EAC   +E+++ G++ P + F +
Sbjct: 359 LINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSN 393


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 140/291 (48%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           ++E +     P +   + +L   C  G ++ A ++ K+ +   V PN  T+ IL      
Sbjct: 234 FSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCK 293

Query: 218 -GM-----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
            GM     +  E M + G  PD +TY+  +D +C    + EA  LF+ M  KG    +P+
Sbjct: 294 EGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGF---APS 350

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            + Y I+I    ++ R+ E  +LL  M +    PD  TY  +++G C AG+ + A K  +
Sbjct: 351 VRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFK 410

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  PD +TY+  L  LC + + DEA RL   M E    P +  YN+LI      G
Sbjct: 411 EMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFG 470

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + A E +  +  +G    V TY VMI GL       EAC +  ++V  G
Sbjct: 471 KLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNG 521



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 18/305 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--- 217
           +  + + + ++  P +   N LL +L K        ++CK++  + ++PN  T  IL   
Sbjct: 54  VASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINC 113

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                          L +M ++G  P + T+ T ++  C    + +A  LF+ +   G  
Sbjct: 114 LCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGF- 172

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             +P+  TY  +I  L +         LL  M   GC PDV  Y  V++ +C   +  EA
Sbjct: 173 --APSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEA 230

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
             F  EM ++G PP++VTY+  L   C+    +EA  L+ +MI     P+  T+ +L+  
Sbjct: 231 MYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDG 290

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             + G    A   +  M + G   D  TY  ++DG    S+++EA  L + +V KG    
Sbjct: 291 LCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPS 350

Query: 447 YRKFD 451
            R ++
Sbjct: 351 VRVYN 355



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 148/358 (41%), Gaps = 53/358 (14%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTE 167
           +AYN +ID L   +   +       M+D     N V        F  +  L      + +
Sbjct: 212 VAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQ 271

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--------- 217
            I     P      +L+D LCK G++  A  + + + +N V+P+A TY+ L         
Sbjct: 272 MIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQ 331

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS----- 269
                +  + M+  G AP    YN  I+  CK+R + EA  L   M  +  T  +     
Sbjct: 332 MDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYST 391

Query: 270 ---------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
                                      P + TY+I++  L ++  ++E F LL  M  S 
Sbjct: 392 LMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESK 451

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P +  Y  +++GMC  GK+E A +    +  KG  P +VTY   +  L      +EA 
Sbjct: 452 IEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEAC 511

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
            ++ +M+  GC P+  TYN+ I  +   G+P  A     EM  RG + D  T+ +++D
Sbjct: 512 EMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 130/288 (45%), Gaps = 16/288 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           +K + E  K+   P +     ++  LCK G    A  + K+++ K  KP+   YN +   
Sbjct: 161 VKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDS 220

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     M    EM+  G  P+  TY++ +  FC    + EA  LF+ M  +     
Sbjct: 221 LCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVM-- 278

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   T+ I++  L +   + E   +   M  +G  PD  TY  +++G CL  +++EA K
Sbjct: 279 -PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQK 337

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             + M  KG+ P +  YN  +   C ++  +EA  L   M +    P   TY+ L+  + 
Sbjct: 338 LFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFC 397

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           + G P  A + + EM   G   D  TY +++DGL     ++EA  LL+
Sbjct: 398 QAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLK 445



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 16/225 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N+L++  CK   ++ A+T+   + ++ + P+  TY+ L              + 
Sbjct: 349 PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM   G  PD+ TY+  +D  CK   + EA   F  ++    +   P    Y I+I  
Sbjct: 409 FKEMCSYGLLPDSITYSILLDGLCKHGHLDEA---FRLLKAMQESKIEPHICIYNILIQG 465

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           +    ++E    L  ++   G  P V TY  ++ G+   G   EA +   +M   G  P+
Sbjct: 466 MCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPN 525

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
             TYN  ++    N +   A+RL   M+  G      T+ ML+ +
Sbjct: 526 SCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDL 570



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 2/206 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK--VEEAY 327
           P    +  ++ +LV+        SL   M  S   P+V T   ++  +C + +  V  A+
Sbjct: 67  PPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAF 126

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             L +M   G  P  VT+   L  LC      +A++L+  + ++G  PS+ TY  +I   
Sbjct: 127 SALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGL 186

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            ++G    A +   +M+++GC  DV  Y  +ID L    +  EA +   E+V++G+    
Sbjct: 187 CKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNV 246

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHM 473
             + S L     +G L     L   M
Sbjct: 247 VTYSSILHGFCNLGQLNEATSLFKQM 272


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 142/284 (50%), Gaps = 16/284 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+      L+  +   G +  A     K +    +P+  TY  L          
Sbjct: 123 LKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNT 182

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M+Q    P+ F YNT ID+ CK R VTEA +LF  M TKG    SP   TY
Sbjct: 183 SAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGI---SPDIFTY 239

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I AL      +   +LL  M++S  +PDV ++  V++ +C  GKV EA+  +++M  
Sbjct: 240 NSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ 299

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P++VTY   +   C     DEA++++  M+  GC P+V +YN LI+ Y ++   D 
Sbjct: 300 RGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDK 359

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           A   + EM ++    D  TY  +I GL    ++++A  L  E+V
Sbjct: 360 AMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 403



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 170/390 (43%), Gaps = 27/390 (6%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVFVPVDV--LL 159
           Q N      AYN +ID L   +   + F L   M+      D    N+ +    ++    
Sbjct: 194 QKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWK 253

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL- 217
            +     E +  K  P++ + N ++DALCK G V  A  +  K ++  V+PN  TY  L 
Sbjct: 254 HVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALM 313

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++  + M+  G  P+  +YNT I+ +CK + + +A  LF  M  +   
Sbjct: 314 DGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEM-CRQEL 372

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           I  P   TY+ +I  L   +R+++  +L   M+    +P++ TY+ +L+ +C    + EA
Sbjct: 373 I--PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEA 430

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
              L+ +      PDI   N  +  +C     + A  L+  +   G  P V TY+++I+ 
Sbjct: 431 MALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMING 490

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
               G  D A + + EMD+ GC  +   Y  +  G    ++   A  LL+E+V +G    
Sbjct: 491 LCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSAD 550

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
                 ++  LS   D G    L   +R+F
Sbjct: 551 ASTMTLFVKMLS---DDGLDQSLKQILREF 577



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 3/256 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + +   M++M   P    +N  + +  K +  +    L   M + G     P   T  I
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGI---PPNIYTLHI 101

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +    +R+   FS+L  ++  G  PD +T+  ++ G+ + GK+ EA    ++M  +G
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEG 161

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + PD+VTY   +  LC   N   A+RL G M++  C P+V  YN +I    +  +   AF
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + EM  +G + D+ TY  +I  L +  + +    LL E+V+  +      F++ +  L
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDAL 281

Query: 458 SVIGDLGAIHKLSDHM 473
              G +   H + D M
Sbjct: 282 CKEGKVTEAHDVVDKM 297


>gi|90399282|emb|CAH68243.1| H0306F03.10 [Oryza sativa Indica Group]
 gi|125549952|gb|EAY95774.1| hypothetical protein OsI_17648 [Oryza sativa Indica Group]
          Length = 442

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 178/405 (43%), Gaps = 46/405 (11%)

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD--NYAHEPLAYNLMIDILSSTKYKAKQF 135
           PL   +V+  L  +  + + A  FF W+   D  N    P      +D+L     K  +F
Sbjct: 30  PLDATAVLETLSLYANDWRRALEFFHWSASPDGANVPPTPATVARAVDVLG----KHFEF 85

Query: 136 RLVCSML----DYMKRNNKVFVP--------------VDVLLMILKQYTEKIKVKTQPEI 177
            L  S+L    D  + +     P              +D  +         I ++ +   
Sbjct: 86  PLATSLLVSHHDPGRADPSFLRPALRSLLNRLAAANLIDDAIRAFDSTAGSIGLRDEASF 145

Query: 178 NALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL--GM----------QTLEE 224
           +A   L+DALC    VD A  +C  +      P   TYN+L  G           Q   +
Sbjct: 146 HA---LVDALCDHRRVDEAHHLCFGKDPPPFPPVTKTYNLLLRGWAKTRAWARLRQLWFD 202

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M   G A D  +Y+  +D   K+    +A  +F+ M+ KG  I    A   AI  V L Q
Sbjct: 203 MDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDV-VAYNTAIHSVGLAQ 261

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              ++    L   M+++GC P+ ST+  +++ +C  G+ +E Y F+++M   G  P+++T
Sbjct: 262 G--VDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLT 319

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+CF + L   +   E L L+ +M+E GCWP + TY MLI  +   G     F  W  M+
Sbjct: 320 YHCFFQYLSRPQ---EVLGLFEKMLERGCWPRMDTYVMLIKRFGRWGFLRPVFIVWKAME 376

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           ++G + D   Y  +ID L     V+ A    EE+++KGL    RK
Sbjct: 377 EQGLSPDAFAYNSLIDALLQKGMVDLARKYDEEMLSKGLSPKPRK 421



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           L D +++  +++ +C   +V+EA+          +PP   TYN  L+     +      +
Sbjct: 139 LRDEASFHALVDALCDHRRVDEAHHLCFGKDPPPFPPVTKTYNLLLRGWAKTRAWARLRQ 198

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  M   G    + +Y++ +    + G+P  AF+ + EM ++G A DV  Y   I  + 
Sbjct: 199 LWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVG 258

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
               V+ A  L  ++V+ G K     F++ +  L   G     +     M KF
Sbjct: 259 LAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKF 311


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 187/438 (42%), Gaps = 45/438 (10%)

Query: 45  SDSVSDVAKLYEAIIDNSNAYDNMEKALDSL---GVPLTTDSVVGVLQRFQFEEKIAFRF 101
           S +  ++A+L   ++ + N +   E  L  L   GV L+   +V +L R +   K+A   
Sbjct: 40  SPAADELARL---LLSHHNPFHPAESTLQLLSGGGVSLSQSLLVQILLRLRGASKLALSL 96

Query: 102 FMWAGHQDNYAHEPL----AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
              A    + +        AY+ ++D L         +RLV          ++ F  +  
Sbjct: 97  LNSARLHPSPSVSSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAATSRTFAVLAR 156

Query: 158 LLMILKQYTEKIK--------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP 209
             +      + ++        V  +P+      LLD LCK      A  +  + K K +P
Sbjct: 157 RYVAAGMTRQAVRAFDDMEAFVGREPDAGEFTTLLDTLCKYKYPKVATEVFNKRKYKYEP 216

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA---------- 247
           N   Y IL              + L++MI  G  P+  TYN  ++  C+           
Sbjct: 217 NEKMYTILIYGWCKVNRNDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFD 276

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           R V  A DL + MR +G     P   +Y+I++    +  + E C  +   M + G  P V
Sbjct: 277 RTVRAAEDLLKEMRDRGI---EPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTV 333

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
           +TY  V++ +   G++E+A + L EM ++G  P   TYNCF K     K+   AL LY +
Sbjct: 334 ATYTSVIKCLASCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKK 393

Query: 368 MIEVGC--WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           M        P + +Y++L+ M+ +L +     E W++M +     D+D+Y ++I G  + 
Sbjct: 394 MKAPASPTAPDIHSYHILLGMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCEN 453

Query: 426 SKVEEACFLLEEVVNKGL 443
            K  EAC    E++ KG 
Sbjct: 454 EKWREACQFFMEMIEKGF 471



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM   G  P   TYN     +   + V  A +L++ M+   S  ++P   +Y I++  
Sbjct: 356 LHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPASP-TAPDIHSYHILLGM 414

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            V+ ++      L   M  S   PD+ +Y  ++ G C   K  EA +F  EM  KG+ P 
Sbjct: 415 FVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWREACQFFMEMIEKGFLPQ 474

Query: 342 IVTYNCFLKVL 352
            +T+    + L
Sbjct: 475 KITFEILYRGL 485


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 19/287 (6%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG------------MQTLEEMIQ 227
            N LLDAL K      A ++ + ++ +  P+  TYN L             +  L +M +
Sbjct: 166 FNSLLDALGKSRHASKAASLVRALERRFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAE 225

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--PTAKTYAIMIVALVQN 285
            G  P   TYN  +  F +A  +  A + F  M+ +G+   S  P   +Y  +I  L   
Sbjct: 226 SGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVA 285

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            ++++   L   M   GC P V+TY  +++ +C  G VE+A    ++M  K Y P++VTY
Sbjct: 286 GQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTY 345

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              ++ LC     D A++L  RM   GC P VQTYN+LI   FE GE + A   +  M K
Sbjct: 346 TVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSK 405

Query: 406 -RGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKLPYR 448
              C  + DTY ++I  +F   + E+   A  ++ E+V +G  LP R
Sbjct: 406 GEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVMEMVERGY-LPRR 451



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 5/175 (2%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PDV TY  + +G C A     A   L +M   G  P   TYN  LK          A   
Sbjct: 195 PDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNF 254

Query: 365 YGRMIEVG-----CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           + +M + G     C P + +Y  +I      G+ D A + + EM K GC   V TY  +I
Sbjct: 255 FLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALI 314

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             +     VE+A  + +++V K        +   +  L  +G +    KL + M+
Sbjct: 315 QVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMK 369



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 38/171 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHAPD 233
           P +    +L+  LC  G +D A  + +R+K +  +P   TYN+L   + EE    G    
Sbjct: 340 PNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEE----GE--- 392

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
                           + +A  LFE M +KG     P   TY I+I A+    R E+  +
Sbjct: 393 ----------------IEKALCLFERM-SKGED-CLPNQDTYNIIISAMFVRKRAEDMAT 434

Query: 294 ---LLGHMINSGCLPDVSTYKEVLEGMCLAG---------KVEEAYKFLEE 332
              ++  M+  G LP       VL G+ L G         +++E Y+ L  
Sbjct: 435 AARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQISRDLLRMQEKYRRLRR 485


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 159/362 (43%), Gaps = 44/362 (12%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  +FF WA  + NY H+   Y  +I  L   +    Q+  +  M+  M RN        
Sbjct: 72  VKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVE----QYGEMWKMIQEMVRN-------- 119

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
                       I V T  E   L+ ++  L    +V  A TI  ++K  K +P A  YN
Sbjct: 120 -----------PICVVTPTE---LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYN 165

Query: 216 ---ILGM---------QTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
              I+ M         Q   EM   GH  PD  TY+  I  FCK      A  L   M+ 
Sbjct: 166 SMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKE 225

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     PT K Y ++I    + +      SL   M +  C PDV TY E++ G+  AG+
Sbjct: 226 IGM---QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGR 282

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EAY F  EM  +G  PD V  N  +  L      D+A++L+  M  + C PSV TYN 
Sbjct: 283 IDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNT 342

Query: 383 LISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +I   FE         +W E M + G +    TY ++IDG    +++E+A  LLEE+  K
Sbjct: 343 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 402

Query: 442 GL 443
           G 
Sbjct: 403 GF 404



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 136/314 (43%), Gaps = 17/314 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNA----NTYNILG--------MQ 220
           +P++     L+  L K G +D A    C+  +   +P+     N  N LG        M+
Sbjct: 264 RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMK 323

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKAR-MVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             +EM  +   P   TYNT I    +++   +E    FE M+  G    SP++ TY+I+I
Sbjct: 324 LFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI---SPSSFTYSILI 380

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               + +RME+   LL  M   G  P  + Y  +++ +  A + + A +  +E+      
Sbjct: 381 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 440

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
                Y   +K L      D+A+ ++  M ++GC P V  YN L+S     G  D A  T
Sbjct: 441 SSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 500

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
              M + GC  D+++Y ++++GL        A  +L  +    ++     +++ L  LS 
Sbjct: 501 MRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSH 560

Query: 460 IGDLGAIHKLSDHM 473
            G      KL   M
Sbjct: 561 AGMFEEASKLMKEM 574



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 19/296 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTL---------- 222
           +P+   +N +++ L K G +D A  + + ++  +  P+  TYN + ++ L          
Sbjct: 299 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTI-IKALFESKSRASEV 357

Query: 223 ----EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
               E M + G +P +FTY+  ID FCK   + +A  L E M  KG     P    Y  +
Sbjct: 358 PSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF---PPCPAAYCSL 414

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I AL +  R +    L   +  +        Y  +++ +  AG++++A    +EM   G 
Sbjct: 415 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 474

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  YN  +  L      DEAL    RM E GC P + +YN++++   + G P  A E
Sbjct: 475 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 534

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
               M +     DV +Y  ++  L      EEA  L++E+   G +     + S L
Sbjct: 535 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSIL 590



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 17/275 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           +K + E   ++  P +   N ++ AL   K    +      +  ++ + P++ TY+IL  
Sbjct: 322 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 381

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  LEEM + G  P    Y + ID   KA+    A +LF+ ++      
Sbjct: 382 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK---ENC 438

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            S +A+ YA+MI  L +  R+++  ++   M   GC PDV  Y  ++ G+   G ++EA 
Sbjct: 439 GSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEAL 498

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             +  M   G  PDI +YN  L  L        A+ +   M +    P V +YN ++   
Sbjct: 499 STMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 558

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              G  + A +   EM+  G   D+ TY  +++ +
Sbjct: 559 SHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI 593



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 279 IVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +V ++ N +M  +  ++   +    C P    Y  ++  +   G+ E+ ++   EM  +G
Sbjct: 132 VVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEG 191

Query: 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           +  PD VTY+  +   C     D A++L   M E+G  P+ + Y MLI+++F+  +  GA
Sbjct: 192 HCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGA 251

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + EM  + C  DV TY  +I GL    +++EA     E+  +G +      D+  M 
Sbjct: 252 LSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP-----DTVFMN 306

Query: 457 LSVIGDLGAIHKLSDHMRKF 476
            ++I  LG   +L D M+ F
Sbjct: 307 -NMINFLGKAGRLDDAMKLF 325


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 159/362 (43%), Gaps = 44/362 (12%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  +FF WA  + NY H+   Y  +I  L   +    Q+  +  M+  M RN     PV 
Sbjct: 101 VKMQFFRWAARKRNYEHDTSTYMALIRCLEVVE----QYGEMWKMIQEMVRN-----PVC 151

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN 215
           V+  +                  L+ ++  L    ++  A  I  ++K  K +P A+ YN
Sbjct: 152 VVTPM-----------------ELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYN 194

Query: 216 ---ILGMQTLE---------EMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
              I+ M   E         EM   G   PD  TY+  I  FCK      A  L   M+ 
Sbjct: 195 SMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKD 254

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     PTAK Y +++  L + D +     L   M +  C PDV TY E++ G+  AG+
Sbjct: 255 NGM---QPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGR 311

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EAY F  EM  +G  PD V  N  +  L      D+A++L+  M  + C PSV TYN 
Sbjct: 312 LDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNT 371

Query: 383 LISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +I   FE         +W E M   G +    TY ++IDG    ++ E+A  LLEE+  K
Sbjct: 372 IIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEK 431

Query: 442 GL 443
           G 
Sbjct: 432 GF 433



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 17/275 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKC-GLVDYAETICKRVKNK-VKPNANTYNIL-- 217
           +K + E   ++  P +   N ++ AL +    V    +  +R+K   + P+  TY+IL  
Sbjct: 351 IKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILID 410

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  LEEM + G  P    Y + ID   KA+    A +LF+ ++      
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELK---ENC 467

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            S +A+ YA+MI  L +  R+++   L   M   GC P+V  Y  ++ G+  AG ++EA 
Sbjct: 468 GSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEAL 527

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             +  M + G  PDI +YN  L  L      D A+ +   M +    P   +YN ++   
Sbjct: 528 TTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGAL 587

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              G  + A +   EM+  G   D+ TY  +++ +
Sbjct: 588 SHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAI 622



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 8/200 (4%)

Query: 279 IVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           I+ ++ N +M  +  ++   +    C P    Y  ++  +   G+ E+ ++   EM N+G
Sbjct: 161 IIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEG 220

Query: 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              PD VTY+  +   C     D A+ L   M + G  P+ + Y ML+++ F+L    GA
Sbjct: 221 QCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGA 280

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + EM  + C  DV TY  +I GL    +++EA     E+  +G +      D+ LM 
Sbjct: 281 LGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRP-----DTVLMN 335

Query: 457 LSVIGDLGAIHKLSDHMRKF 476
            ++I  LG   +L D ++ F
Sbjct: 336 -NMINFLGKAGRLDDAIKLF 354


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 152/324 (46%), Gaps = 21/324 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++   N+++ +LC  G ++ A E + + +K+  KP+  TY IL             ++
Sbjct: 163 SPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALE 222

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +E++  G  PD +TYN  I   CK  M   A D    +  +G    +P   +Y I++ 
Sbjct: 223 LFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGC---NPDVVSYNILLR 279

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           + +   R E+   L+  M+ SGC P+V T+  ++   C  G+V EA   LE M  KG  P
Sbjct: 280 SFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTP 339

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D  +Y+  +   C     D A+    +M+  GC P +  YN +++   + G  D A + +
Sbjct: 340 DSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVF 399

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLMQL 457
            ++D+ GC   V  Y  M   L+ C    +A  ++ E++ KG+   ++ Y    S L + 
Sbjct: 400 EKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRD 459

Query: 458 SVIGDLGAIHKLSDHMRKFYNPVI 481
            ++ +  AI  L D     + P +
Sbjct: 460 GLVDE--AIGLLVDMEATRFQPTV 481



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 3/237 (1%)

Query: 207 VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           +K   N+ N+     + E+++    PD ++YN  I  F KA  +  A  +F+ MR++G  
Sbjct: 104 IKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF- 162

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             SP   TY IMI +L    ++E  F ++  ++  GC P V TY  ++E   L G++ EA
Sbjct: 163 --SPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEA 220

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +  +E+ ++G  PD+ TYN  ++ +C     D AL     +   GC P V +YN+L+  
Sbjct: 221 LELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRS 280

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +      +       +M   GC  +V T+ ++I       +V EA  +LE +  KGL
Sbjct: 281 FLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGL 337



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 135/294 (45%), Gaps = 16/294 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L+ + E +    +P++   N ++  +CK G+ D A    + +  +   P+  +YNIL   
Sbjct: 221 LELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRS 280

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G + +++M+  G  P+  T++  I +FC+   V EA ++ E M+ KG T  
Sbjct: 281 FLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLT-- 338

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P + +Y  +I A  +  R++     L  M++ GCLPD+  Y  +L  +C  G  + A  
Sbjct: 339 -PDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALD 397

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E++   G PP +  YN     L    N  +AL +   MI  G  P   TYN LIS   
Sbjct: 398 VFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLC 457

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             G  D A     +M+       V ++ +++ G+    +V E   LL  +V KG
Sbjct: 458 RDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKG 511



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 16/224 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P +   ++L+ + C+ G V  A  + + +K K + P++ +Y+ L             ++
Sbjct: 303 EPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M+  G  PD   YNT + T CK      A D+FE +   G     PT + Y  M  
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCP---PTVRAYNTMFS 419

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL       +   ++  MI  G  PD  TY  ++  +C  G V+EA   L +M    + P
Sbjct: 420 ALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQP 479

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            ++++N  L  +C      E + L   M+E GC P+  +Y +LI
Sbjct: 480 TVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLI 523



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 164 QYTEK-IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN------ 215
           +Y EK +     P+I   N +L  LCK G  D A  + +++      P    YN      
Sbjct: 362 EYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSAL 421

Query: 216 ------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                 I  ++ + EMI+ G  PD  TYN+ I   C+  +V EA  L   M    +T   
Sbjct: 422 WSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDME---ATRFQ 478

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  ++ I+++ + +  R+ E   LL  M+  GCLP+ ++Y  ++EG+  AG   EA   
Sbjct: 479 PTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAM-- 536

Query: 330 LEEMGNKGYPPDIVT 344
             E+ N  Y   +++
Sbjct: 537 --ELANSLYRLGVIS 549



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +  E    L  +++ G  PDV    ++++G   +  +++A + +E +   G  PD+ +YN
Sbjct: 77  KHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYN 135

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +         D A +++ RM   G  P V TYN++I      G+ + AFE   E+ K 
Sbjct: 136 AMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKD 195

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           GC   V TY ++I+      ++ EA  L +E+V++GL+
Sbjct: 196 GCKPSVITYTILIEATILEGRINEALELFDELVSRGLR 233



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           ++L   C AGK  E+  FLE + +KG+ PD+V     +K   +++N  +A+R+   ++E 
Sbjct: 67  KLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM-EILET 125

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              P V +YN +IS + +  + D A + +  M  RG + DV TY +MI  L    K+E A
Sbjct: 126 YGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELA 185

Query: 432 CFLLEEVVNKGLK 444
             +++E++  G K
Sbjct: 186 FEVMDELLKDGCK 198


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 201/457 (43%), Gaps = 47/457 (10%)

Query: 2   TLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDN 61
           T  HL    +     +V + R  S+ + +  +P  + + F     S   + + +  I+  
Sbjct: 17  TSPHLYERIKQTDNEIVNMFRVPSMNNKMQNLP--MNRKFSGKDTSTRKLDERFIRILKI 74

Query: 62  SNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121
                + EKAL+ L + +    V  VL +   E  +  +FF WAG + N+ H+  ++  +
Sbjct: 75  FKWGPDAEKALEVLKLKVDHRLVHEVL-KIDVEINVKIQFFKWAGKRRNFEHDSSSFMAL 133

Query: 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALN 181
           I  L    +  + ++ +  M+    R++   +    L  I+K                  
Sbjct: 134 IHSLDEAGFYGEMWKTIQDMV----RSSTCVISSVYLSEIVK------------------ 171

Query: 182 LLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGM------------QTLEEMIQM 228
                L K  +V+ A ++  ++K  K KP A TYN + +            +   EM   
Sbjct: 172 ----LLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCND 227

Query: 229 GHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           G+  PD  TY+  I  F K      A  LF+ M+  G     PTAK Y  ++    + D+
Sbjct: 228 GNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLY---PTAKIYTTLLGIYFKLDK 284

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   ++  M + GC   V TY E ++G+  AG+V++AY+   +M   G  PD+V  N 
Sbjct: 285 VEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINS 344

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKR 406
            + +L      +  L+L+ +M    C P+V TYN +I   FE   P     +W E M   
Sbjct: 345 LINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGC 404

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           G A    TY ++IDG    +++E+A  LLEE+  KG 
Sbjct: 405 GIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGF 441



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 17/294 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + + IK   +P++  +N L++ L K G ++    + +++++ + KPN  TYN +      
Sbjct: 327 FLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFE 386

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                       E+M   G AP +FTY+  ID FCK   + +A  L E M  KG     P
Sbjct: 387 CKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGF---PP 443

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y  +I +L +  R E    L   +  +        Y  +++     G++ EA    
Sbjct: 444 CPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLF 503

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM   G  PD+  YN  +  +      DEA  L   M E GC P + ++N++++     
Sbjct: 504 NEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLART 563

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           G PD A E + +M       D  +Y  ++  L      EEA  L+ E+  KG +
Sbjct: 564 GVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFE 617



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 13/243 (5%)

Query: 252 EAADLFEFMRTKGSTISSPT---AKTYAIMIVALVQNDRM-EECFSLLGHMINSGCLPDV 307
           EA    E  +T    + S T   +  Y   IV L+   +M  +  S+   +    C P  
Sbjct: 139 EAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAA 198

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +TY  ++  +   G +E+ ++   EM N G   PD VTY+  +       + D A+RL+ 
Sbjct: 199 TTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFD 258

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M E G +P+ + Y  L+ +YF+L + + A +   EM  +GC   V TY   I GL    
Sbjct: 259 EMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAG 318

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF--------YN 478
           +V++A  +  +++  G K      +S +  L  +G L    KL   M  +        YN
Sbjct: 319 RVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYN 378

Query: 479 PVI 481
            VI
Sbjct: 379 TVI 381



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 21/255 (8%)

Query: 184 LDALCKCGLVDYA-ETICKRVKNKVKPNA----NTYNILG--------MQTLEEMIQMGH 230
           +  L K G VD A       +K+  KP+     +  NILG        ++   +M     
Sbjct: 311 IKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQC 370

Query: 231 APDNFTYNTAIDTF--CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            P+  TYNT I     CKA   +EAA  FE M  KG  I+ P++ TY+I+I    + +R+
Sbjct: 371 KPNVVTYNTVIKALFECKAP-ASEAASWFEKM--KGCGIA-PSSFTYSILIDGFCKTNRI 426

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNC 347
           E+   LL  M   G  P  + Y  ++  +    + E A + FLE   N G+    V Y  
Sbjct: 427 EKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARV-YAV 485

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K         EA+ L+  M ++G  P V  YN L+S     G  D A      MD+ G
Sbjct: 486 MIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENG 545

Query: 408 CAQDVDTYCVMIDGL 422
           C+ D++++ ++++GL
Sbjct: 546 CSPDLNSHNIILNGL 560


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 191/449 (42%), Gaps = 52/449 (11%)

Query: 45  SDSVSDVAKLYEAIIDNSNAYDNMEKALDSL---GVPLTTDSVVGVLQRFQFEEKIAFRF 101
           S +  ++A+L   ++ + N +   E  L  L   GV L+   +V +L R +   K+A   
Sbjct: 42  SPTADELARL---LLAHHNPFHPSESPLQLLSGGGVSLSQGLLVQILLRLRGASKLALSL 98

Query: 102 FMWAGHQDNYAHEPLA--YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD--- 156
                   + +  P A  Y+ ++D L         +RLV           + F  +    
Sbjct: 99  LNAVRLHPSVSSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAATPRTFAVLARRY 158

Query: 157 VLLMILKQYTEKIK-----VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211
           V   + +Q           +  +P+      LLD LCK      A  +  + K K +PN 
Sbjct: 159 VAAGLTRQAVRAFDDMEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYKYEPNE 218

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA----------RM 249
             Y IL              + L++MI  G  P+  TYN  ++  C+           R 
Sbjct: 219 KMYTILIYGWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDRT 278

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V  A +L + M  +G     P   +Y+I++    +  + E C  +   M + G  P V+T
Sbjct: 279 VNAAENLLKEMNDRGI---EPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVAT 335

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  V++ +   G++E+A   L EM ++G  P   TYNCF K     K+   AL LY +M 
Sbjct: 336 YTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKM- 394

Query: 370 EVGCWPS---VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           +  C P+   + +YN+L+ M+ +L   +   E W++M +R    D+D+Y +++ G     
Sbjct: 395 KAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKE 454

Query: 427 KVEEACFLLEEVVNKG-------LKLPYR 448
           K  EAC    E++ KG        + PYR
Sbjct: 455 KWREACQFFMEMIEKGFLPQKITFETPYR 483


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 151/349 (43%), Gaps = 58/349 (16%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           ++ + N+L+   CK G ++ A  +  R+   V PNA TY+ +             MQ L 
Sbjct: 148 DVTSYNVLISGYCKSGEIEEALRVLDRMG--VSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
             +Q    PD  T    ID  CK   V +A  LF  MR KG     P   TY ++I    
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGC---KPDVVTYNVLIKGFC 262

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R++E    L  + + GC PDV ++  +L  +C  G+  +A K L  M  KG  P +V
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322

Query: 344 TYNCFLKVLC-----------------------------------DNKNGDEALRLYGRM 368
           T+N  +  LC                                   + K  D A+     M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  GC+P + TYN+L++   + G+ D A     ++  +GC+  + +Y  +IDGL    K 
Sbjct: 383 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
           E A  LLEE+  KGLK         +   SV+G L    K+ + M+ F+
Sbjct: 443 ELAVELLEEMCYKGLK------PDLITCTSVVGGLSREGKVREAMKFFH 485



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP++ + N++L +LC  G  +D  + +   ++    P+  T+NIL             + 
Sbjct: 283 QPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALN 342

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE M + GH P++ ++N  I  FC  + +  A +  E M ++G     P   TY I++ 
Sbjct: 343 VLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCY---PDIVTYNILLT 399

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ ++++   +L  + + GC P + +Y  V++G+   GK E A + LEEM  KG  P
Sbjct: 400 ALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKP 459

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D++T    +  L       EA++ +  +      P+   YN +I+   +  +   A +  
Sbjct: 460 DLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFL 519

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +M  +GC     TY  +I G+      E+A  L  E+ ++GL
Sbjct: 520 ADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 11/246 (4%)

Query: 206 KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
           K+    N   I+G+  LEE    G   D  +YN  I  +CK+  + EA  + + M     
Sbjct: 126 KIGRTKNASQIMGI--LEES---GAVIDVTSYNVLISGYCKSGEIEEALRVLDRMGV--- 177

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
              SP A TY  ++ +L    ++++   +LG  + S C PDV T   +++  C    V +
Sbjct: 178 ---SPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQ 234

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A K   EM NKG  PD+VTYN  +K  C     DEA+R   ++   GC P V ++NM++ 
Sbjct: 235 AMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILR 294

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
                G    A +    M ++GC   V T+ ++I+ L     + +A  +LE +   G   
Sbjct: 295 SLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTP 354

Query: 446 PYRKFD 451
             R F+
Sbjct: 355 NSRSFN 360



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 144/325 (44%), Gaps = 16/325 (4%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           +K + E      +P++   N+L+   CK G +D A    K++ +   +P+  ++N++   
Sbjct: 236 MKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRS 295

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     M+ L  M++ G  P   T+N  I+  C+  ++ +A ++ E M   G T  
Sbjct: 296 LCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT-- 353

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P ++++  +I        ++     L  M++ GC PD+ TY  +L  +C  GKV++A  
Sbjct: 354 -PNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVV 412

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L ++ +KG  P +++YN  +  L      + A+ L   M   G  P + T   ++    
Sbjct: 413 ILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLS 472

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G+   A + +H + +     +   Y  +I GL    +   A   L ++V KG K    
Sbjct: 473 REGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEA 532

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHM 473
            + + +  ++  G      KLS+ +
Sbjct: 533 TYTTLIKGITYEGLAEDASKLSNEL 557



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           E +   E+M  KG    SP       +I    +  R +    ++G +  SG + DV++Y 
Sbjct: 97  EGSRFLEYMTNKGK---SPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYN 153

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++ G C +G++EEA + L+ M   G  P+  TY+  L  LCD     +A+++ GR ++ 
Sbjct: 154 VLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQS 210

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            C+P V T  +LI    +      A + ++EM  +GC  DV TY V+I G     +++EA
Sbjct: 211 KCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEA 270

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHMRKFYNPVI 481
              L+++ + G +      +  L  L   G  + A+  L+  +RK   P +
Sbjct: 271 IRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSV 321



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G++EE  +FLE M NKG  PD++     ++  C       A ++ G + E G    V +Y
Sbjct: 93  GELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSY 152

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           N+LIS Y + GE +   E    +D+ G + +  TY  ++  L D  K+++A
Sbjct: 153 NVLISGYCKSGEIE---EALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQA 200


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 140/307 (45%), Gaps = 45/307 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P+    N+++ +LC  G +D A + + + + +  +P   TY IL             ++
Sbjct: 190 SPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALK 249

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS---TIS--------- 268
            ++EM+  G  PD FTYNT I   CK  MV  A ++   +  KGS    IS         
Sbjct: 250 LMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALL 309

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY+I+I  L ++ ++EE  +LL  M   G  PD  
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           +Y  ++   C  G+++ A +FLE M + G  PDIV YN  L  LC N   D+AL ++G++
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            EVGC P+  +YN + S  +  G+   A     EM   G   D  TY  MI  L     V
Sbjct: 430 GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489

Query: 429 EEACFLL 435
           +EA  LL
Sbjct: 490 DEAFELL 496



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 20/298 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK   E +    +P++   N ++  +CK G+VD A  + + ++ K  +P+  +YNIL   
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRA 307

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G + + +M      P+  TY+  I T C+   + EA +L + M+ KG T  
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT-- 365

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P A +Y  +I A  +  R++     L  MI+ GCLPD+  Y  VL  +C  GK ++A +
Sbjct: 366 -PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 424

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              ++G  G  P+  +YN     L  + +   AL +   M+  G  P   TYN +IS   
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484

Query: 389 ELGEPDGAFETWHEMDKRGCA--QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             G  D AFE    +D R C     V TY +++ G     ++E+A  +LE +V  G +
Sbjct: 485 REGMVDEAFELL--VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCR 540



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M+ LE+  Q    PD F YN  I+ FCK   + +A  + + MR+K     SP   TY IM
Sbjct: 147 MEILEKFGQ----PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF---SPDTVTYNIM 199

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I +L    +++    +L  +++  C P V TY  ++E   L G V+EA K ++EM ++G 
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+ TYN  ++ +C     D A  +   +   G  P V +YN+L+      G+ +   +
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEK 319

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              +M    C  +V TY ++I  L    K+EEA  LL+ +  KGL
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 1/155 (0%)

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   LL  M+  G  PDV    ++++G      + +A + +E +   G  PD+  YN  +
Sbjct: 107 ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALI 165

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C     D+A R+  RM      P   TYN++I      G+ D A +  +++    C 
Sbjct: 166 NGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ 225

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             V TY ++I+       V+EA  L++E++++GLK
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260


>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g53330
 gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana]
 gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 471

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 189/416 (45%), Gaps = 32/416 (7%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMI-DILSSTKYKAKQFRLVCSMLDYMK 146
           L R + +   A + F     +      P  Y+L+  DI+ +    +K F  +  +L ++K
Sbjct: 15  LLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELDQVLLHLK 74

Query: 147 RNNKVFVPVDVLL--------------MILKQYTEKIKVKTQPEINALNLLLDALCKCGL 192
            + ++ VP +++                 L  + E  + + Q  + +LN LL AL KCG 
Sbjct: 75  TDTRI-VPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGE 133

Query: 193 VDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
           ++  +     +    KP+A TYNIL             ++  +EM++    P   T+ T 
Sbjct: 134 LEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTL 193

Query: 241 IDTFCKARMVTEAADL-FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
           I   CK   V EA  +  + ++  G     PT   YA +I AL Q   +   F L     
Sbjct: 194 IHGLCKDSRVKEALKMKHDMLKVYGV---RPTVHIYASLIKALCQIGELSFAFKLKDEAY 250

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
                 D + Y  ++  +  AG+  E    LEEM  KG  PD VTYN  +   C   + +
Sbjct: 251 EGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSE 310

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A R+   M+E G  P V +YNM++ ++F + + + A   + +M +RGC+ D  +Y ++ 
Sbjct: 311 SANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVF 370

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           DGL +  + EEA  +L+E++ KG K    + + +L +L   G L  + K+   + +
Sbjct: 371 DGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHR 426


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 197/471 (41%), Gaps = 56/471 (11%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +I+  +A++  +E  L  L   L    V  VLQ  Q +E++A RFF WA  Q  Y H+P+
Sbjct: 77  LIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQ-LQTDERVALRFFYWADRQWRYRHDPI 135

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLD-YMKRNNKVFVPVDV-------LLMILKQYTEK 168
            Y  M++ILS TK      R++  M    ++R  + F  V V       L   ++  T  
Sbjct: 136 VYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMM 195

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---------- 217
            K   +P+++  N  +  L     +D A    +R++  ++ PN  TYN L          
Sbjct: 196 QKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRL 255

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE----------------------- 252
               + + EM   G +PD  +Y T +   CK + + E                       
Sbjct: 256 EDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNT 315

Query: 253 ----------AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
                       +  EF+R             Y+ ++ +  +  RM++   ++  M + G
Sbjct: 316 FVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKG 375

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C+PDV TY  V+ G+C   KV++A K L +M   G  P+ V+Y   L  LC N N  EA 
Sbjct: 376 CIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAR 435

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +     E    P+  TY++L+  +   G+   A +   EM K+G         ++I  L
Sbjct: 436 EMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSL 495

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
               KV+EA   +E+ +N G  +    F + +       DL A   L D M
Sbjct: 496 CQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM 546



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 20/285 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM----QTLE--EM 225
           P++     +++ LC+   VD A+ + +++ K+  KPN  +Y  L  G+     +LE  EM
Sbjct: 378 PDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREM 437

Query: 226 IQMGHA----PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + M       P+  TY+  +  F +    +EA DL   M  KG     PT     ++I +
Sbjct: 438 MNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFF---PTPVEINLLIQS 494

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q ++++E    +   +N+GC  +V  +  V+ G C    +E A   L++M      PD
Sbjct: 495 LCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPD 554

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  L      +EA +L  +M+ VG  P+  TY  +I  Y  +G  +   +   
Sbjct: 555 VVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLE 614

Query: 402 EMDKRGCAQDVDT-YCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +M  R   Q+  T Y  +I+ L     +E+A  LL +V+    K+
Sbjct: 615 KMLSR---QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKI 656



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 122/323 (37%), Gaps = 47/323 (14%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P   +   LL+ LCK G  ++  E +    +    PNA TY++L               
Sbjct: 412 KPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACD 471

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + EMI+ G  P     N  I + C+   V EA    E     G  ++            
Sbjct: 472 LVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFC 531

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY  +I AL +  R+EE   L   M+  G +P   
Sbjct: 532 QKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPV 591

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V+   C  G+VE+  K LE+M ++        YN  ++ LC   N ++A +L G++
Sbjct: 592 TYRTVIHQYCRMGRVEDLLKLLEKMLSRQECR--TAYNQVIEKLCSFGNLEQAYKLLGKV 649

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +         T +MLI  Y   G P  ++     M  R    D+     +   L    K 
Sbjct: 650 LRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKS 709

Query: 429 EEACFLLEEVVNKGLKLPYRKFD 451
           EEA  L+   V +G   P  + D
Sbjct: 710 EEADKLILRFVERGRISPQCQLD 732


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 191/470 (40%), Gaps = 90/470 (19%)

Query: 39  KVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGV----PLTTDSVVGVLQRFQFE 94
           K +  SS  +S    L      NSN   +  K+  S G       TTD+ +   +R Q  
Sbjct: 21  KHYSNSSHGLSHNRSLL--TFSNSNPNHDNGKSFSSSGARNLQATTTDAAIPTERRQQHS 78

Query: 95  EKIAFR------FFMWAGHQDNYAHEPLAYNLMI------DILSSTKYKAKQFRLVCSML 142
           + + FR       F  +    NY         M+      D++  TK     F L     
Sbjct: 79  QSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL----- 133

Query: 143 DYMKRNNKVFVPVDVLLM-ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK 201
               RN    VP  V +M IL+++        QP++ A N L++  CK   +D A  +  
Sbjct: 134 ----RN----VPKAVRVMEILEKFG-------QPDVFAYNALINGFCKMNRIDDATRVLD 178

Query: 202 RVKNK-VKPNANTYNIL------------------------------------------- 217
           R+++K   P+  TYNI+                                           
Sbjct: 179 RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEG 238

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L+EM+  G  PD FTYNT I   CK  MV  A ++   +  KG     P   
Sbjct: 239 GVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGC---EPDVI 295

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y I++ AL+   + EE   L+  M +  C P+V TY  ++  +C  GK+EEA   L+ M
Sbjct: 296 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 355

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG  PD  +Y+  +   C     D A+     MI  GC P +  YN +++   + G+ 
Sbjct: 356 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 415

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A E + ++ + GC+ +  +Y  M   L+       A  ++ E+V+ G+
Sbjct: 416 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGI 465



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 166/362 (45%), Gaps = 36/362 (9%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-------- 161
           +++ + + YN+MI  L S      +  L   +LD +  +N     +   ++I        
Sbjct: 184 DFSPDTVTYNIMIGSLCSRG----KLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGG 239

Query: 162 ----LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
               LK   E +    +P++   N ++  +CK G+VD A  + + ++ K  +P+  +YNI
Sbjct: 240 VDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNI 299

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L            G + + +M      P+  TY+  I T C+   + EA +L + M+ KG
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 359

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
            T   P A +Y  +I A  +  R++     L  MI+ GCLPD+  Y  VL  +C  GK +
Sbjct: 360 LT---PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKAD 416

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +A +   ++G  G  P+  +YN     L  + +   AL +   M+  G  P   TYN +I
Sbjct: 417 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMI 476

Query: 385 SMYFELGEPDGAFETWHEMDKRGCA--QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           S     G  D AFE    +D R C     V TY +++ G     ++E+A  +L+ +V  G
Sbjct: 477 SCLCREGMVDKAFELL--VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNG 534

Query: 443 LK 444
            +
Sbjct: 535 CR 536



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 1/155 (0%)

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   LL  M+  G  PDV    ++++G      V +A + +E +   G  PD+  YN  +
Sbjct: 103 ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALI 161

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C     D+A R+  RM      P   TYN++I      G+ D A +   ++    C 
Sbjct: 162 NGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQ 221

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             V TY ++I+       V+EA  LL+E++++GLK
Sbjct: 222 PTVITYTILIEATMLEGGVDEALKLLDEMLSRGLK 256


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 196/430 (45%), Gaps = 41/430 (9%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           D   ++  +V  L +   D+S     +E AL    + LT D V+ VL+R + + + A+ F
Sbjct: 81  DPDGETALEVQNLLKTYRDSS--VSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVF 138

Query: 102 FMWA---GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
           F WA   G +  Y+     +N ++DIL     + ++F  +  + D M +  K  V     
Sbjct: 139 FNWASRCGIESGYSPGCGVHNEILDILG----RMRRFHEMTQLFDEMSKR-KGLVNERTF 193

Query: 159 LMILKQYT------EKIKVKTQP-------EINALNLLLDALCKCGLVDYAETICKRVKN 205
            ++L +Y       E +K+  +        ++ A   LL +LC+   V+ AE +    KN
Sbjct: 194 GVLLNRYAAAHKTEEAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKN 253

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           +  P+  + N++              +   ++I     PD FTY   I++  KA  ++ A
Sbjct: 254 EFPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTA 313

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             LF+ M  KG    +P       +I AL    R+ E   +L  M    C PDV+TY  +
Sbjct: 314 VKLFQAMWEKGC---NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSL 370

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           ++ +C   + E+ Y+ L++M  KG  P+  TY   LK     K  +E   +  RM   GC
Sbjct: 371 IKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLLK---STKKPEEVPGILERMERNGC 427

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
             +   YN+++ +Y + G       T  EM++ G   D  TY +MI GL+D  ++++A  
Sbjct: 428 RMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALS 487

Query: 434 LLEEVVNKGL 443
             +++   G+
Sbjct: 488 YFKQMTLMGM 497



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 4/250 (1%)

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           I+ G++P    +N  +D   + R   E   LF+ M  +   ++    +T+ +++      
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNE---RTFGVLLNRYAAA 203

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            + EE   +       G   D+  ++ +L  +C    VE A +FL       +PPDI + 
Sbjct: 204 HKTEEAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMA-EFLFHSKKNEFPPDIKSM 262

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  L   C   +  EA R +  +I   C P   TY + I+   + G+   A + +  M +
Sbjct: 263 NVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWE 322

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           +GC  DV     +ID L    ++ EA  +L E+  +  +     ++S +  L  I     
Sbjct: 323 KGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEK 382

Query: 466 IHKLSDHMRK 475
           +++L D M +
Sbjct: 383 VYELLDDMEQ 392


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 155/328 (47%), Gaps = 32/328 (9%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           K Y+  +++   P++   N ++D LCK   VD AE +                       
Sbjct: 211 KAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDV----------------------F 248

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M++ G  P+N TYNT ID  CKA+ V  A  +F+ M  KG     P+  TY  +I  L
Sbjct: 249 QQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGV---KPSNVTYNTIIDGL 305

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   ++    +   MI+ G  PD  TY  +++G+C A  +++A    ++M +KG  PD 
Sbjct: 306 CKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDN 365

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +TY   +  LC  ++ D A  ++ +MI+ G  P+  TYN LI  Y   G+ +   +   E
Sbjct: 366 LTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKE 425

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M       DV TY +++D L    K  EA  L + ++ KG+K        Y + L   G 
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIK---PSVTIYGIMLHGYGK 482

Query: 463 LGAIHKLSDHMRKFYNPVIARRLALNQK 490
            GA+ ++ D      N ++A  ++ N +
Sbjct: 483 KGALSEMHD----LLNLMVANGISPNHR 506



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 186/442 (42%), Gaps = 62/442 (14%)

Query: 75  LGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQ 134
           LGV      + G+  R + EE       M  G   + + + ++YN++I+   +     K 
Sbjct: 153 LGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKA 212

Query: 135 FRLVCSM---LDYMKRNNKV-----FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
           + L   M    D +  N  +        VD    + +Q  EK     +P     N ++D 
Sbjct: 213 YSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEK---GVKPNNVTYNTIIDG 269

Query: 187 LCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPD 233
           LCK   VD AE + +++ +K VKP+  TYN +                 ++MI  G  PD
Sbjct: 270 LCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPD 329

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           + TYNT ID  CKA+ + +A  +F+ M  KG     P   TY I+I  L +   ++    
Sbjct: 330 HVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGV---KPDNLTYTIIIDGLCKAQSVDRAEG 386

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +   MI+ G  P+  TY  ++ G    G+ EE  + ++EM      PD+ TY   L  LC
Sbjct: 387 VFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLC 446

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-----------------EP--- 393
            N   +EA  L+  MI  G  PSV  Y +++  Y + G                  P   
Sbjct: 447 KNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHR 506

Query: 394 ---------------DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
                          D     + +M ++G + +V TY  +ID L    +V++A     ++
Sbjct: 507 IFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQM 566

Query: 439 VNKGLKLPYRKFDSYLMQLSVI 460
           +N+G+      F+S +  L  +
Sbjct: 567 INEGVTPNNVVFNSLVYGLCTV 588



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 23/304 (7%)

Query: 141 MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETI 199
           +LDY+ +N K      +       +   I+   +P +    ++L    K G L +  + +
Sbjct: 441 LLDYLCKNGKCNEARSL-------FDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLL 493

Query: 200 CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
              V N + PN   +N +             M    +M Q G +P+  TY T ID  CK 
Sbjct: 494 NLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKL 553

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             V +A   F  M  +G T   P    +  ++  L   D+ E+   L   M+N G  PD+
Sbjct: 554 GRVDDAVLQFNQMINEGVT---PNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDI 610

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
             +  VL  +C  G+V EA + ++ M   G  PD+++YN  +   C     DEA++L   
Sbjct: 611 VFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDG 670

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+  G  P++ +YN L+  Y + G  D A+  + EM ++G    V+TY  +++GLF   +
Sbjct: 671 MVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGR 730

Query: 428 VEEA 431
             EA
Sbjct: 731 FSEA 734



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 138/291 (47%), Gaps = 19/291 (6%)

Query: 169 IKVKTQ---PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTL 222
           IK+K Q   P +     L+DALCK G VD A     ++ N+ V PN   +N L  G+ T+
Sbjct: 529 IKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTV 588

Query: 223 E----------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           +          EM+  G  PD   +NT +   CK   V EA  L + M   G     P  
Sbjct: 589 DKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGL---KPDV 645

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y  +I       RM+E   LL  M+++G  P++ +Y  +L G C AG+++ AY    E
Sbjct: 646 ISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFRE 705

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  KG  P + TYN  L  L  +    EA  LY  MI+     S+ TY++++  + +   
Sbjct: 706 MLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNC 765

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D AF+ +  +       D+ T+ +MIDGLF   + E+A  L   +   GL
Sbjct: 766 FDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGL 816



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 130/294 (44%), Gaps = 16/294 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           + E +    +P+I   N +L  LCK G V  A  +    V   +KP+  +YN L      
Sbjct: 598 FLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCF 657

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ L+ M+  G  P+  +YNT +  +CKA  +  A  LF  M  KG T   P 
Sbjct: 658 ASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVT---PG 714

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            +TY  ++  L ++ R  E   L  +MI S  L  + TY  +L+G C     +EA+K  +
Sbjct: 715 VETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQ 774

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            + +     DI+T+N  +  L      ++A+ L+  +   G  PSV TY ++     E G
Sbjct: 775 SLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEG 834

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             +     +  M+K G A +      +I  L D  ++  A   L ++  K   L
Sbjct: 835 SLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSL 888



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 10/218 (4%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           APD  TY+  I  FC+   +      F  +   G  +          ++  L    R+ E
Sbjct: 81  APDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQ---LLKGLCDTKRVGE 137

Query: 291 CFS-LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM---GNKGYPPDIVTYN 346
               LL  M   GC   V +Y  +L+G+C   + EEA + L  M    +    PD+V+YN
Sbjct: 138 AMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYN 197

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +    +    D+A  L+   +E+G  P V TYN +I    +  E D A + + +M ++
Sbjct: 198 IVINGFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEK 254

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           G   +  TY  +IDGL    +V+ A  + +++V+KG+K
Sbjct: 255 GVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVK 292



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 16/232 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           +    +P I + N LL   CK G +D A  + + +  K V P   TYN +          
Sbjct: 672 VSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRF 731

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +    MI+        TY+  +D FCK     EA  +F+ + +    +      T+
Sbjct: 732 SEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLD---IITF 788

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            IMI  L +  R E+   L   +  +G +P V TY+ + E +   G +EE       M  
Sbjct: 789 NIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEK 848

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
            G  P+    N  ++ L D      A     ++ E        T +MLIS++
Sbjct: 849 SGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLF 900


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 155/314 (49%), Gaps = 24/314 (7%)

Query: 163 KQYTEKIKVKTQPE-------INALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTY 214
           KQY+  + +  Q +       + +LN+L++ LC+   VD+A +I  K  K  + P A+T+
Sbjct: 102 KQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTF 161

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L             ++   EM++ GH P+  +YNT I+  CK    + A D+F+ M  
Sbjct: 162 NALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQ 221

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P   TY  +I +L ++  + +    L  M++ G  P+V TY  ++ G C+ G+
Sbjct: 222 NGC---KPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQ 278

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           + EA +  +EM  +   PD VT    +  LC      EA  ++  M E G  P++ TYN 
Sbjct: 279 LNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNA 338

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+  Y      + A + +  M ++GCA  V +Y ++I+G     +++EA  LL E+ +K 
Sbjct: 339 LMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKA 398

Query: 443 LKLPYRKFDSYLMQ 456
           L  P     S LMQ
Sbjct: 399 LN-PDTVTYSTLMQ 411



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 164/362 (45%), Gaps = 38/362 (10%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL--------L 159
           Q+    + + YN +ID L   +        +  MLD         +P +V          
Sbjct: 221 QNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRG-------IPPNVFTYNCMVHGF 273

Query: 160 MILKQYTEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNA 211
            IL Q  E  ++          P+   L +L+D LCK G+V  A  + + +  K V+PN 
Sbjct: 274 CILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNI 333

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
           +TYN L              +  E MI+ G AP   +YN  I+ FCK+R + EA  L   
Sbjct: 334 STYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAE 393

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M  K     +P   TY+ ++  L Q  R +E  ++   M + G LP++ TY  +L+G C 
Sbjct: 394 MYHKAL---NPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCK 450

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
            G ++EA K L+ M  K   P+IV +   ++ +      + A  L+ ++   G  P+++T
Sbjct: 451 HGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRT 510

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           Y ++I    + G  D A++ + +M+  G   +  +Y VMI G         A  L++E+V
Sbjct: 511 YTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 570

Query: 440 NK 441
            K
Sbjct: 571 GK 572



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 16/290 (5%)

Query: 174 QPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYN-------ILGM-----Q 220
           +P++   N ++D+LCK  LV D  E + + +   + PN  TYN       ILG      +
Sbjct: 225 KPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATR 284

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+     PD  T    +D  CK  MV+EA  +FE M  KG     P   TY  ++ 
Sbjct: 285 LFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGV---EPNISTYNALMD 341

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  M E   +   MI  GC P V +Y  ++ G C + +++EA   L EM +K   P
Sbjct: 342 GYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNP 401

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTY+  ++ LC      EAL ++  M   G  P++ TY++L+  + + G  D A +  
Sbjct: 402 DTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLL 461

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
             M ++    ++  + ++I+G+F   K+E A  L  ++   G++   R +
Sbjct: 462 KSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTY 511



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 113/272 (41%), Gaps = 18/272 (6%)

Query: 220 QTLEEMIQMGHAPDNFTY--NTAIDTFCKARMVTEAADLFEFMRTKGSTIS--------- 268
           + L++ ++MG  P +F +  +  I T    R  +   +   F+    + IS         
Sbjct: 18  RILQQHMEMGIFPSSFLFFNHHHISTSACTRKPSLPQNNGGFVSNNSTNISIDDALASFY 77

Query: 269 -------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
                   P+   +   + +  +  +     SL   M   G   +V +   ++  +C   
Sbjct: 78  RMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLN 137

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            V+ A   L +M   G  P   T+N  +  LC+     EA+ L+  M+  G  P+V +YN
Sbjct: 138 HVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYN 197

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +I+   + G    A + + +M++ GC  DV TY  +ID L     V +A   L E++++
Sbjct: 198 TIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDR 257

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G+      ++  +    ++G L    +L   M
Sbjct: 258 GIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 187/439 (42%), Gaps = 39/439 (8%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E AL+  G+   +  +  +   F    K  F  F WA  Q  +      +N MID+L+ 
Sbjct: 90  LEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAK 149

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKV-FVPVDVLLMILKQYTEK----IKVKT--------- 173
           ++     + LV   LD ++   +   V  +   +++++Y         ++T         
Sbjct: 150 SRAFDSAWLLV---LDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDS 206

Query: 174 ----QPEINALNLLLDALCKCGLVDYAETICKRVKN---KVKPNANTYNIL--------- 217
                 E +   +LLD+LCK G V  A     + +       P+   YN+L         
Sbjct: 207 IRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRK 266

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                Q    M +    P   TY T ++ +C+ R   +A +L   MR KG     P    
Sbjct: 267 LKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGI---EPNVIV 323

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I +L +  R +E   ++   + S   P +STY  +++G C AG +  A K L+ M 
Sbjct: 324 YNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMI 383

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           ++G+ P + TYN F +        +E + LY +MIE G  P   TY++LI M  E    D
Sbjct: 384 SRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLD 443

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A +   EM  RGC  D+ T  +++  L    ++EEA    E+++ +G+   Y  F+   
Sbjct: 444 LAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMN 503

Query: 455 MQLSVIGDLGAIHKLSDHM 473
             L   G      KL D M
Sbjct: 504 NALRKRGLTEMARKLCDMM 522



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 16/177 (9%)

Query: 172 KTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------G 218
           +T P I+  N L+   CK G LV  ++ +   +     P   TYN              G
Sbjct: 351 ETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEG 410

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M    +MI+ GH PD  TY+  I   C+   +  A  + + MR +G  +   T+    ++
Sbjct: 411 MNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATS---TML 467

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +  L +  R+EE F+    MI  G +P   T++ +   +   G  E A K  + M +
Sbjct: 468 VHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTEMARKLCDMMAS 524


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 140/290 (48%), Gaps = 16/290 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------- 217
           T+ ++    P+    N+L+DALCK G +  A+ +   + K   KP+  TYN L       
Sbjct: 254 TKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSR 313

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  +    M++ G  PD   YN  ID +CK +MV EA  LF+ +  K      PT 
Sbjct: 314 ENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV---PTI 370

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y  +I  L  + R+     LL  M  S   PDV TY  +++ +C  G++ EA   L  
Sbjct: 371 ASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVM 430

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  KG  P+IVTYN  +   C   N + A  ++ RM++ G  P +  YN+LI+ Y +   
Sbjct: 431 MMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEM 490

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            D A   + EM  +    D+ +Y  +IDGL +  ++     LL+E+ + G
Sbjct: 491 VDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSG 540



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D  C  G   +  + + K V+  V P+  T+NIL                L  M +
Sbjct: 234 NSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSK 293

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  TYN  ++ +C    V EA +LF  M  +G     P    Y ++I    +   
Sbjct: 294 RGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL---EPDVLNYNVLIDGYCKTKM 350

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++E   L   + N   +P +++Y  +++G+C +G++    K L+EM     PPD+VTYN 
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI 410

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC      EAL +   M++ G  P++ TYN ++  Y      + A + ++ M K G
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              D+  Y V+I+G      V+EA  L +E+ +K L      ++S +  L  +G +  + 
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQ 530

Query: 468 KLSDHM 473
           +L D M
Sbjct: 531 ELLDEM 536



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 20/297 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANT 213
           VD  +++ K+   K  V   P I + N L+D LC  G + + + +   +    +P +  T
Sbjct: 351 VDEAMVLFKELCNKNLV---PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVT 407

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YNIL             +  L  M++ G  P+  TYN  +D +C    V  A D+F  M 
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV 467

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P    Y ++I    + + ++E   L   M +   +PD+++Y  +++G+C  G
Sbjct: 468 KSGL---EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++    + L+EM + G  PD++TYN  L   C  +  D+A+ L+ +++E G WP   T +
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNH 583

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            ++    +  +   A +    +   GC+ +V TY ++I+ L       EA  LL ++
Sbjct: 584 AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKM 640



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 154/363 (42%), Gaps = 51/363 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           +   ++V   P  +  + LL A+ + G    A ++  ++++K + P+  T+ IL      
Sbjct: 43  FNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFH 102

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  +++ G+ P+  T+NT I+ FC   M+ +A D  + +  +G       
Sbjct: 103 QSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQ-- 160

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L +N +++    LL  M  S   P++  Y  +++G+C  G V +A     
Sbjct: 161 -FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCS 219

Query: 332 EMGNKGYPPDIVTYNCFLKVLC-----------------DNKNGDE--------ALRLYG 366
           ++G +G   D VTYN  +   C                 +N + D+        AL   G
Sbjct: 220 QIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEG 279

Query: 367 RMIEV----------GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           R++E           G  P + TYN L+  Y        A E ++ M KRG   DV  Y 
Sbjct: 280 RILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYN 339

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           V+IDG      V+EA  L +E+ NK L      ++S +  L   G +  + KL D M   
Sbjct: 340 VLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS 399

Query: 477 YNP 479
             P
Sbjct: 400 AQP 402



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 118/280 (42%), Gaps = 50/280 (17%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N+L+DALCK G +++    +   +K  VKPN  TYN +                
Sbjct: 403 PDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDI 462

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M++ G  PD   YN  I+ +CK  MV EA  LF+ MR K      P   +Y  +I  
Sbjct: 463 FNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLI---PDIASYNSLIDG 519

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTY--------------------KEVLEG----- 316
           L    R+     LL  M +SG  PDV TY                    ++++EG     
Sbjct: 520 LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDF 579

Query: 317 ---------MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
                    +C   K++ A   L+ +   G  P++ TY   +  LC + +  EA+ L  +
Sbjct: 580 YTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSK 639

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           M +    P   T+ ++I +  +  E D A +   EM  RG
Sbjct: 640 MEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 26/263 (9%)

Query: 140 SMLD-YMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
           +M+D Y  RNN V V  D+       +   +K   +P+I   N+L++  CK  +VD A  
Sbjct: 445 AMMDGYCLRNN-VNVAKDI-------FNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 199 ICKRVKNK-VKPNANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFC 245
           + K +++K + P+  +YN L  G+          + L+EM   G +PD  TYN  +D FC
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC 556

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           K +   +A  LF  +  +G     P   T   ++  L + ++++     L H++  GC P
Sbjct: 557 KTQPFDKAISLFRQI-VEGIW---PDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSP 612

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V TY  ++  +C  G   EA   L +M +   PPD +T+   + VL      D+A +L 
Sbjct: 613 NVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLR 672

Query: 366 GRMIEVGCWPSVQTYNMLISMYF 388
             MI  G     ++ N   +++F
Sbjct: 673 EEMIARGLVNIEKSLNQSHNVFF 695


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 145/293 (49%), Gaps = 20/293 (6%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG------------MQTLE 223
           ++   N LLDAL K      A ++ + ++ +  P+A TYN L             +  L 
Sbjct: 174 DLPLFNSLLDALVKSRRASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILR 233

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--PTAKTYAIMIVA 281
           +M++ G AP   TYN  +  F ++  +  A D F  M+ +GS   +  P   +Y  ++  
Sbjct: 234 QMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHG 293

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++++   +   M   GC P  +TY  +++  C  G +E+A    ++M  KGY P+
Sbjct: 294 LGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPN 353

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   ++ LC       A++L  RM   GC P+VQTYN+LI    E GE +   + + 
Sbjct: 354 VVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFE 413

Query: 402 EMDK-RGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKLPYRKF 450
            M K   C  + DTY ++I  +F   + E+   A  ++ E+V++G  LP RKF
Sbjct: 414 TMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGY-LP-RKF 464


>gi|148906806|gb|ABR16549.1| unknown [Picea sitchensis]
          Length = 524

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 180/409 (44%), Gaps = 38/409 (9%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
            +E AL+ LG+ ++   V  VL+        A +FF W+G + +  H PLA+NL++D+L 
Sbjct: 90  GVENALNELGLEVSIQFVEDVLKLSYGAGMEAMKFFRWSGLKLSRKHSPLAWNLLVDLLG 149

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ------------ 174
               K K F  +   +  MK  N+  V ++ +  +   Y +  KV               
Sbjct: 150 ----KEKLFDAMWDCIKVMK--NQGIVSMETMSSVFGNYVQAGKVAEARMTFDVIEQYGC 203

Query: 175 -PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQ----------T 221
             ++ ALN  L A C+      A     +VK K+ P+A+TY +L  G++          T
Sbjct: 204 PQDVVALNCFLSAFCRYKQSKEALEFFDKVKEKIAPDADTYALLLEGLEIEGNVSKARTT 263

Query: 222 LEEMI-QMGHAPDNFT-YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             EMI + G  P+N + YN  + T      V EA      M+T+      P    +   +
Sbjct: 264 FGEMIIRHGWLPNNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCL---PDLGFFRNTL 320

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG--KVEEAYKFLEEMGNKG 337
             L Q    +  + L   M  SG L D+ +Y  ++   C A   +V+ AY+ L+EM   G
Sbjct: 321 QILYQRKDTKNAYGLWELMKQSGILLDLPSYNTMIGVFCSANPIQVDFAYRLLDEMVFTG 380

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD  TYN   + L   +  +EA  ++  M +    P    Y M I MYFE  +P+ A 
Sbjct: 381 IFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEADDPEMAV 440

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             W  M ++      D   ++IDG  D  +  EA     E + +G+++P
Sbjct: 441 MMWKHMIQKAIFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIP 489


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 189/430 (43%), Gaps = 41/430 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E  L+   V L+   +  VL++      +A   F WA +Q  + H    YN +I+ L  
Sbjct: 81  VETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLG- 139

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------Q 174
              K KQF+L+ S++D MK   K  +  +   +I ++Y    KVK              +
Sbjct: 140 ---KIKQFKLIWSLVDDMK--AKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFK 194

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---GMQTL-------- 222
            E +  N +LD L K   V  A+ +  ++K K  +P+  +Y IL     Q L        
Sbjct: 195 MESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEV 254

Query: 223 -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G  PD   Y   I+  CKA+   EA   F  M  +      P+   +  +I  
Sbjct: 255 NREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNC---KPSPHIFCSLING 311

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ +         +SG   +  TY  ++   C + ++E+AYK ++EM  KG  P+
Sbjct: 312 LGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPN 371

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+  L  L   +   EA  +Y  M    C P+V TY +++ M+      D A + W 
Sbjct: 372 ARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWD 428

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM  +G    +  +  +I  L   +K++EAC    E+++ G++ P   F S L Q   + 
Sbjct: 429 EMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMF-SRLKQ--TLL 485

Query: 462 DLGAIHKLSD 471
           D G   K++D
Sbjct: 486 DEGRKDKVTD 495



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 141/322 (43%), Gaps = 39/322 (12%)

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP-VDVLLMILKQYTEKI 169
           +  E   +N M+D LS    K++       + D MK+  K F P +    ++L+ + +++
Sbjct: 193 FKMESSDFNRMLDTLS----KSRNVGDAQKVFDKMKK--KRFEPDIKSYTILLEGWGQEL 246

Query: 170 KV-------------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY- 214
            +               +P++ A  ++++A CK    + A      ++ +  KP+ + + 
Sbjct: 247 NLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFC 306

Query: 215 ---NILG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
              N LG        ++  E     G   +  TYN  +  +C ++ + +A    + MR K
Sbjct: 307 SLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLK 366

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P A+TY I++  L++  R +E + +   M    C P VSTY+ ++   C   ++
Sbjct: 367 GV---GPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERL 420

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           + A K  +EM  KG  P +  ++  +  LC     DEA   +  M++VG  P    ++ L
Sbjct: 421 DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRL 480

Query: 384 ISMYFELGEPDGAFETWHEMDK 405
                + G  D   +   +MD+
Sbjct: 481 KQTLLDEGRKDKVTDLVVKMDR 502


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 140/290 (48%), Gaps = 16/290 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------- 217
           T+ ++    P+    N+L+DALCK G +  A+ +   + K   KP+  TYN L       
Sbjct: 254 TKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSR 313

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  +    M++ G  PD   YN  ID +CK +MV EA  LF+ +  K      PT 
Sbjct: 314 ENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV---PTI 370

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y  +I  L  + R+     LL  M  S   PDV TY  +++ +C  G++ EA   L  
Sbjct: 371 ASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVM 430

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  KG  P+IVTYN  +   C   N + A  ++ RM++ G  P +  YN+LI+ Y +   
Sbjct: 431 MMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEM 490

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            D A   + EM  +    D+ +Y  +IDGL +  ++     LL+E+ + G
Sbjct: 491 VDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSG 540



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D  C  G   +  + + K V+  V P+  T+NIL                L  M +
Sbjct: 234 NSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSK 293

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  TYN  ++ +C    V EA +LF  M  +G     P    Y ++I    +   
Sbjct: 294 RGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL---EPDVLNYNVLIDGYCKTKM 350

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++E   L   + N   +P +++Y  +++G+C +G++    K L+EM     PPD+VTYN 
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI 410

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC      EAL +   M++ G  P++ TYN ++  Y      + A + ++ M K G
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              D+  Y V+I+G      V+EA  L +E+ +K L      ++S +  L  +G +  + 
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQ 530

Query: 468 KLSDHM 473
           +L D M
Sbjct: 531 ELLDEM 536



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 164/351 (46%), Gaps = 27/351 (7%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANT 213
           VD  +++ K+   K  V   P I + N L+D LC  G + + + +   +    +P +  T
Sbjct: 351 VDEAMVLFKELCNKNLV---PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVT 407

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YNIL             +  L  M++ G  P+  TYN  +D +C    V  A D+F  M 
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV 467

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P    Y ++I    + + ++E   L   M +   +PD+++Y  +++G+C  G
Sbjct: 468 KSGL---EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++    + L+EM + G  PD++TYN  L   C  +  D+A+ L+ +++E G WP   T +
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNH 583

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            ++    +  +   A +    +   GC+ +V TY ++I+ L       EA  LL ++ + 
Sbjct: 584 AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN 643

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRV 492
                 R  D+   ++ +IG L   ++ +D   K    +IAR L   +KR+
Sbjct: 644 D-----RPPDAITFEI-IIGVLLQRNE-TDKAEKLREEMIARGLVNIEKRL 687



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 154/363 (42%), Gaps = 51/363 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           +   ++V   P  +  + LL A+ + G    A ++  ++++K + P+  T+ IL      
Sbjct: 43  FNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFH 102

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  +++ G+ P+  T+NT I+ FC   M+ +A D  + +  +G       
Sbjct: 103 QSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQ-- 160

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L +N +++    LL  M  S   P++  Y  +++G+C  G V +A     
Sbjct: 161 -FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCS 219

Query: 332 EMGNKGYPPDIVTYNCFLKVLC-----------------DNKNGDE--------ALRLYG 366
           ++G +G   D VTYN  +   C                 +N + D+        AL   G
Sbjct: 220 QIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEG 279

Query: 367 RMIEV----------GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           R++E           G  P + TYN L+  Y        A E ++ M KRG   DV  Y 
Sbjct: 280 RILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYN 339

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           V+IDG      V+EA  L +E+ NK L      ++S +  L   G +  + KL D M   
Sbjct: 340 VLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGS 399

Query: 477 YNP 479
             P
Sbjct: 400 AQP 402


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 24/348 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL--------KQYTE 167
           + Y  +ID L       + +RL   MLD     N V     +    +        K + E
Sbjct: 459 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 518

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----- 219
            I+   +P++  LN  +D + K G V+    I + +++    P+  +Y+IL  G+     
Sbjct: 519 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 578

Query: 220 -----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                     M Q G A D   YN  +D FCK+  V +A ++ E M+ K      PT  T
Sbjct: 579 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK---CVQPTVAT 635

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  ++  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  LEEM 
Sbjct: 636 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM 695

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P++ T+N  L  L   +  +EAL  +  M E+ C P+  TY++LI+    + + +
Sbjct: 696 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 755

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            AF  W +M K+G   +V TY  MI GL     + +A  L E     G
Sbjct: 756 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 803



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 145/315 (46%), Gaps = 17/315 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILG 218
           M  K + E      +P+  +   ++  LCK G +  AE +  +++  +  P A  YN + 
Sbjct: 267 MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 326

Query: 219 M------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           M            + LE + + G  P   ++N+ +    K R V EA  LFE M+     
Sbjct: 327 MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD--- 383

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
            + P + TY I+I  L    R+EE + +L  M ++   P++ T   +++ +C A K+EEA
Sbjct: 384 -AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 442

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           YK  E    +G  PD VTY   +  L      DEA RL+ +M++ G   +   Y  LI  
Sbjct: 443 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 502

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +F  G  +   + + E+ +RGC  D+      +D +F   +VE+   + E++ + G    
Sbjct: 503 FFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPD 562

Query: 447 YRKFDSYLMQLSVIG 461
            R +   +  L+  G
Sbjct: 563 VRSYSILIHGLTKAG 577



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 26/269 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P+I   N+ +D   K G VD A                       +   E+   G  PD
Sbjct: 246 EPDIVLYNVCIDCFGKAGNVDMA----------------------WKFFHELKAQGLKPD 283

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           + +Y + I   CKA  + EA +LF  M  + S    P A  Y  MI+      R E+ + 
Sbjct: 284 DVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV---PCAYAYNTMIMGYGSAGRFEDAYK 340

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  +   GC+P V ++  +L  +    KV+EA    E M  K   P+  TYN  + +LC
Sbjct: 341 LLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPNSSTYNIIIDMLC 399

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                +EA R+   M     +P++ T N+++    +  + + A++ +    +RGC  D  
Sbjct: 400 LGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV 459

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           TYC +IDGL    +V+EA  L E++++ G
Sbjct: 460 TYCSLIDGLGKKGQVDEAYRLFEKMLDAG 488



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 50/348 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + + N +L  L K   VD A ++ + +K   +PN++TYNI+              + L
Sbjct: 352 PSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRIL 411

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +EM      P+  T N  +D  CKAR + EA  +FE    +G    +P   TY  +I  L
Sbjct: 412 DEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGC---NPDCVTYCSLIDGL 468

Query: 283 VQNDRMEECFSLL------------------------------GH-----MINSGCLPDV 307
            +  +++E + L                               GH     +I  GC PD+
Sbjct: 469 GKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDL 528

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
           +     ++ +  AG+VE+     E++ + G+ PD+ +Y+  +  L       E   ++  
Sbjct: 529 TLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHA 588

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M + G     + YN ++  + + G+   A+E   EM ++     V TY  ++DGL    +
Sbjct: 589 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 648

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++EA  L EE  +KG++L    + S +     +G +   + + + M K
Sbjct: 649 LDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK 696



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 129/325 (39%), Gaps = 51/325 (15%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E +K   +P  +  N+++D LC  G V+ A  I   +++  + PN  T NI+        
Sbjct: 378 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 437

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  E   Q G  PD  TY + ID   K   V EA  LFE M   G   ++P   
Sbjct: 438 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHN-ANPV-- 494

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGC------------------------------ 303
            Y  +I     + R E+   +   +I  GC                              
Sbjct: 495 VYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 554

Query: 304 -----LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
                LPDV +Y  ++ G+  AG+  E       M  +G+  D   YN  +   C +   
Sbjct: 555 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 614

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
            +A  +   M E    P+V TY  ++    ++   D A+  + E   +G   +V  Y  +
Sbjct: 615 HKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSL 674

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGL 443
           IDG     +++EA  +LEE++ KGL
Sbjct: 675 IDGFGKVGRIDEAYLILEEMMKKGL 699



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 16/272 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTL---------- 222
           +  A N ++D  CK G V  A  I + +K K V+P   TY  +  G+  +          
Sbjct: 597 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 656

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EE    G   +   Y++ ID F K   + EA  + E M  KG T   P   T+  ++ AL
Sbjct: 657 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT---PNVYTWNSLLDAL 713

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V+ + + E       M    C P+  TY  ++ G+C   K  +A+ F ++M  +G  P++
Sbjct: 714 VKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNV 773

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  L    N  +A  L+ R    G  P   ++N LI           A++ + E
Sbjct: 774 VTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEE 833

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
              RGC  ++ +   ++D L     +E+A  +
Sbjct: 834 TRLRGCRINIKSCISLLDALNKSECLEQAAIV 865



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 3/212 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M ++   P    Y   I    +AR    A +L   M+  G  +       +  ++ AL +
Sbjct: 170 MRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVG---VHLFTTLVRALAR 226

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++ +  +L+  +  S   PD+  Y   ++    AG V+ A+KF  E+  +G  PD V+
Sbjct: 227 EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVS 286

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   + VLC      EA  L+ +M      P    YN +I  Y   G  + A++    + 
Sbjct: 287 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 346

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +RGC   V ++  ++  L    KV+EA  L E
Sbjct: 347 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFE 378



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 3/239 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + LEEM  +G+   N           +AR + +A      MR        P    Y ++I
Sbjct: 130 KVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMR---RLKFRPAFSAYTVLI 186

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            AL +  R E    LL  M   G    V  +  ++  +   G+V +A   ++E+      
Sbjct: 187 GALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLE 246

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PDIV YN  +       N D A + +  +   G  P   +Y  +I +  + G    A E 
Sbjct: 247 PDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEEL 306

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           + +M+          Y  MI G     + E+A  LLE +  +G       F+S L  L 
Sbjct: 307 FAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLG 365


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 137/290 (47%), Gaps = 16/290 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E   +   P I   N+L+DA+CK G V  A+ + K +    V+P+  TY+ L        
Sbjct: 295 EMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRM 354

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  + MI  G  PD F+YN  I  +CKA+ + EA  LF  M  +G T   P   
Sbjct: 355 EIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLT---PDNV 411

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  +I  L Q  R+ E   L  +M ++G LPD+ TY  +L+G C  G + +A++    M
Sbjct: 412 NYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVM 471

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    PDI  YN  +  +C   N  +A +L+  +   G  P+VQ Y  +I+   + G  
Sbjct: 472 QSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLL 531

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A E +  M+  GC  D  +Y V+I G         A  L+ E+ ++G 
Sbjct: 532 DEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGF 581



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 139/295 (47%), Gaps = 17/295 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNI------- 216
           +++ IK+  QP+    N L++ LCK G      E       +  +P   TY         
Sbjct: 153 FSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCK 212

Query: 217 LGMQT-----LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           +G  T      ++M + G  P+  TYN  ID+ CK ++V EA D+F +M+ K     SP 
Sbjct: 213 IGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKR---ISPD 269

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L    R +E  +LL  M +   +P++ T+  +++ +C  GKV EA    +
Sbjct: 270 IFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFK 329

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M   G  PD+VTY+  +          EA +L+  MI  GC P   +YN+LI  Y +  
Sbjct: 330 TMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAK 389

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             D A + ++EM  +G   D   Y  +I GL    ++ EA  L + + + G  LP
Sbjct: 390 RIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNG-NLP 443



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 133/286 (46%), Gaps = 17/286 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           QP +   N+L+D+LCK  LV+ A  I   +K K + P+  TYN L               
Sbjct: 232 QPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASA 291

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM  +   P+ FT+N  +D  CK   V+EA  +F+ M   G     P   TY+ ++ 
Sbjct: 292 LLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGV---EPDVVTYSSLMY 348

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  + E   L   MI  GC PD  +Y  +++G C A +++EA +   EM ++G  P
Sbjct: 349 GYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTP 408

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D V YN  +  LC      EA  L+  M   G  P + TY+ML+  + + G    AF  +
Sbjct: 409 DNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLF 468

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             M       D+  Y ++ID +     +++A  L  E+  +GL LP
Sbjct: 469 RVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGL-LP 513



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 16/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQT 221
           P+I  L++L+D       VD A ++  K +K  ++P+A T+N L             ++ 
Sbjct: 128 PDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEF 187

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++    G  P  +TY T I+  CK    T AA LF+ M   G     P   TY I+I +
Sbjct: 188 FDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGC---QPNVVTYNILIDS 244

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++  + E   +  +M      PD+ TY  +++G+C   + +EA   L EM +    P+
Sbjct: 245 LCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I T+N  +  +C      EA  ++  M E+G  P V TY+ L+  Y    E   A + + 
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFD 364

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M  +GC  D  +Y ++I G     +++EA  L  E++++GL      +++ +  L  +G
Sbjct: 365 AMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLG 424

Query: 462 DLGAIHKLSDHMR 474
            L     L  +M 
Sbjct: 425 RLREAQDLFKNMH 437



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP   T +I+I       R++  FS+   MI  G  PD  T+  ++ G+C  GK  +A +
Sbjct: 127 SPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVE 186

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           F ++    G  P + TY   +  LC       A  L+ +M E GC P+V TYN+LI    
Sbjct: 187 FFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLC 246

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           +    + A + +  M  +  + D+ TY  +I GL +  + +EA  LL E+ +
Sbjct: 247 KDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTS 298



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 3/251 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G +PD +T +  ID F   + V  A  +F  M   G     P A T+  +I  L
Sbjct: 119 KQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLG---LQPDAVTFNTLINGL 175

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  +  +          SGC P V TY  ++ G+C  G+   A    ++M   G  P++
Sbjct: 176 CKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNV 235

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  +  LC +K  +EAL ++  M      P + TYN LI           A    +E
Sbjct: 236 VTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNE 295

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M       ++ T+ V++D +    KV EA  + + +   G++     + S +   S+  +
Sbjct: 296 MTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRME 355

Query: 463 LGAIHKLSDHM 473
           +    KL D M
Sbjct: 356 IVEARKLFDAM 366



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%)

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           SL   M  +G  PD+ T   +++      +V+ A+    +M   G  PD VT+N  +  L
Sbjct: 116 SLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGL 175

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C      +A+  +      GC P+V TY  +I+   ++GE   A   + +M++ GC  +V
Sbjct: 176 CKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNV 235

Query: 413 DTYCVMIDGLFDCSKVEEA 431
            TY ++ID L     V EA
Sbjct: 236 VTYNILIDSLCKDKLVNEA 254



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL-EEMGNKGYPPDIVTYN 346
           +++  +   HM++   LP +  + ++L  +   G+   A   L ++M   G  PDI T +
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +      +  D A  ++ +MI++G  P   T+N LI+   ++G+   A E + + +  
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS 194

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           GC   V TY  +I+GL    +   A  L +++   G
Sbjct: 195 GCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG 230


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 194/446 (43%), Gaps = 57/446 (12%)

Query: 86  GVLQRFQFEE--KIAFRFFMWAGHQDNYAHEPLAYNLMIDILS------STKYKAKQFRL 137
            VL+R + E    +A  FF    + + + H PL + +MI  L+      S +Y  +Q +L
Sbjct: 44  AVLKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKL 103

Query: 138 ---------------VCSMLDYMKRNNKVFVPV----------------DVLL------M 160
                          V   +   +R  ++F  +                D LL      M
Sbjct: 104 QGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 163

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-- 217
           I   Y +  +   +P +   N+LL ALCK   VD A+ +   + NK   PNA +Y  +  
Sbjct: 164 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVIS 223

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                GM      +     P    YN  I+  CK R      +L   M  KG    SP  
Sbjct: 224 SMCEVGMVKEGRQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGI---SPNV 280

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y+ +I  L  + ++E  FSLL  M+  GC P++ T   +++G  + G   +A     +
Sbjct: 281 ISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQ 340

Query: 333 MGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           M    G  P++V YN  ++  C + N D+A+ ++  M E+GC P+++TY  LI+ + + G
Sbjct: 341 MIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRG 400

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             +GA   W++M   GC  +V  Y  M++ L   SK +EA  L+E +  +        F+
Sbjct: 401 SLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFN 460

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKFY 477
           +++  L   G L    K+   M + Y
Sbjct: 461 AFIKGLCDAGRLDWAEKVFRQMEQQY 486



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 121/283 (42%), Gaps = 17/283 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           QP + A N L+   C  G +D A ++   ++     PN  TY  L             + 
Sbjct: 348 QPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVY 407

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M+  G  P+   Y + ++  C+     EA  L E M  +    S PT   +   + 
Sbjct: 408 IWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 467

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              + D  E+ F  +       C P++ TY E+L+G+  A ++EEAY    E+  +G   
Sbjct: 468 DAGRLDWAEKVFRQMEQQYR--CPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEW 525

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
              TYN  L   C+      AL+L G+M+  G  P   T NM+I  Y + G+ + A +  
Sbjct: 526 STSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQML 585

Query: 401 H--EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
                 +R    DV +Y  +I GL   +  E+   L E ++++
Sbjct: 586 DLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMISE 628



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 33/232 (14%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           SM++ + R++K F   + L+ I+       K    P +   N  +  LC  G +D+AE +
Sbjct: 426 SMVEALCRHSK-FKEAESLIEIMS------KENCAPSVPTFNAFIKGLCDAGRLDWAEKV 478

Query: 200 CKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            ++++ + +                       P+  TYN  +D   KA  + EA  L   
Sbjct: 479 FRQMEQQYR---------------------CPPNIVTYNELLDGLAKANRIEEAYGLTRE 517

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           +  +G   S+    TY  ++              L+G M+ +G  PD  T   ++   C 
Sbjct: 518 IFMRGVEWST---STYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCK 574

Query: 320 AGKVEEAYKFLE--EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
            GK E A + L+    G + + PD+++Y   +  LC +   ++ + L+ RMI
Sbjct: 575 QGKAERAVQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMI 626



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 281 ALVQNDRMEECFSLLGH----MINSGCLPDVS-TYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           A+++  R E C  L  H    + NS        T++ ++  + + G+V+     L++M  
Sbjct: 44  AVLKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKL 103

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G+      +   + V       + A+ ++ R+ E GC PSV+ YN ++           
Sbjct: 104 QGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 163

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
            +  + +M + G   +V TY V++  L   +KV+ A  LL E+ NKG   P     SY  
Sbjct: 164 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGC-CP--NAVSYTT 220

Query: 456 QLSVIGDLGAIHKLSDHMRKFYNPVIA 482
            +S + ++G + K    + + + PV++
Sbjct: 221 VISSMCEVGMV-KEGRQLAERFEPVVS 246


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 154/349 (44%), Gaps = 45/349 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILGM----------QT 221
           P +   N+ +  LCK G +D A  +   V +  ++P+  TYN  I G+          + 
Sbjct: 328 PNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEEC 387

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------STISS--- 269
           L +M+  G  P++FTYN+ ID +CK  MV +A  + +    KG         S ++    
Sbjct: 388 LHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQ 447

Query: 270 --------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                               P+   Y  +I  L Q   +     L+  M   GC PD+ T
Sbjct: 448 DGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWT 507

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ G+C  G + +A   + +   KG  PDI TYN  +   C     D A+ L  RM 
Sbjct: 508 YNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMW 567

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G  P V TYN L++   +  + +   E +  M ++GCA ++ TY  +I+ L +  KV 
Sbjct: 568 SQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVN 627

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478
           EA  LL E+ +KGL      F + +     +GDL   + L   M K Y+
Sbjct: 628 EAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYD 676



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 19/302 (6%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYN 215
           ++L  L+   E  +   +P+I   NL+++ LCK G L D    I   +     P+  TYN
Sbjct: 485 LILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYN 544

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             ++ +  M   G  PD  TYNT ++  CK     E  ++F+ M  K
Sbjct: 545 TLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEK 604

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G    +P   TY  +I +L  + ++ E   LLG M + G  PDV ++  ++ G C  G +
Sbjct: 605 GC---APNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDL 661

Query: 324 EEAYKFLEEMGNKGY--PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           + AY     M  K Y       TYN  +    +  N   ALRL+  M + GC P   TY 
Sbjct: 662 DGAYGLFRGM-EKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYR 720

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +LI  + + G  +  ++   E  ++G    + T+  +++ L    KV+EA  ++  +V K
Sbjct: 721 VLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQK 780

Query: 442 GL 443
            +
Sbjct: 781 DI 782



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 4/263 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  +EM++    PD  T+N  +   CK   V E+  LF+ +  +G     P   T+ I I
Sbjct: 281 ELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGV---CPNLFTFNIFI 337

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +   ++    LLG +   G  PDV TY  V+ G+C   +V EA + L +M N G+ 
Sbjct: 338 QGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE 397

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+  TYN  +   C      +A R+    +  G  P   TY  L++ + + G+PD A   
Sbjct: 398 PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAV 457

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           + +   +G    +  Y  +I GL     +  A  L+ E+  KG K     ++  +  L  
Sbjct: 458 FKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCK 517

Query: 460 IGDLG-AIHKLSDHMRKFYNPVI 481
           +G L  A H + D + K   P I
Sbjct: 518 MGCLSDANHLIGDAITKGCIPDI 540



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 3/226 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           + T E M      P  ++YN  ++   +     +A  ++  MR K   + S    TY I 
Sbjct: 175 VDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVY--MRMKDKKVESDVY-TYTIR 231

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I +  +  R      LL +M   GC  +   Y  V+ G    G  + A +  +EM     
Sbjct: 232 IKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCL 291

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+ T+N  +  LC      E+ RL+ ++++ G  P++ T+N+ I    + G  D A  
Sbjct: 292 CPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVR 351

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               + + G   DV TY  +I GL   S+V EA   L ++VN G +
Sbjct: 352 LLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE 397



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 92/250 (36%), Gaps = 81/250 (32%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+I   N L+D  C+   +D A  +  R+ ++ + P+  TYN L             M+ 
Sbjct: 538 PDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEI 597

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
            + M + G AP+  TYNT I++ C ++ V EA DL   M++KG T               
Sbjct: 598 FKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCK 657

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                               S T  TY I+I A  +   M+    L   M  +GC PD  
Sbjct: 658 VGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNY 717

Query: 309 TYKEVLEGMCLAG-----------------------------------KVEEAYKFLEEM 333
           TY+ +++G C  G                                   KV+EA   +  M
Sbjct: 718 TYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLM 777

Query: 334 GNKGYPPDIV 343
             K   PD V
Sbjct: 778 VQKDIVPDTV 787



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P V +Y  ++  +   G   +A+K    M +K    D+ TY   +K  C       AL
Sbjct: 186 CDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAAL 245

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           RL   M  +GC+ +   Y  +++ ++E G+ D A E + EM +     DV T+  ++  L
Sbjct: 246 RLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHAL 305

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
                V E+  L ++V+ +G+      F+ ++  L   G L
Sbjct: 306 CKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSL 346



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 5/172 (2%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHM---INSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
           T  TY  M+  L  + +  E  +LL  M   +++  L  V  Y E +      GK++EA 
Sbjct: 118 TLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGV--YVEAMRFYGRKGKIQEAV 175

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              E M      P + +YN  + +L +    ++A ++Y RM +      V TY + I  +
Sbjct: 176 DTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSF 235

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
              G P  A      M   GC  +   YC ++ G ++    + A  L +E++
Sbjct: 236 CRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEML 287


>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
          Length = 680

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 178/411 (43%), Gaps = 23/411 (5%)

Query: 53  KLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYA 112
           KL    +        ++K+L SLG+ L+ D V  VL R     +    FF WA  +    
Sbjct: 89  KLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVT 148

Query: 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSM--------LDYMKRNNKVFVPVDVLLMILKQ 164
            +  +Y++++  L   K  +    ++  M        L+ +      FV V  +   ++ 
Sbjct: 149 KDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIEL 208

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI-------L 217
           + E      +    + N LL  LC+   V  A+++    K  +  ++ +YNI       L
Sbjct: 209 FEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKL 268

Query: 218 GM-----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           G      + L+EM++ G  PD  +Y+  I+   +   + ++ ++F+ ++ KG+    P A
Sbjct: 269 GEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNV---PDA 325

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  MI   +     +E       M++  C P++ TY +++ G+    KV +A +  EE
Sbjct: 326 NVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEE 385

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M ++G  P       FLK LC       A+ +Y +  + GC  S   Y +L+      G+
Sbjct: 386 MLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGK 445

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                  W EM + G   DV+ Y  ++DGL     +E A  ++EE + KG 
Sbjct: 446 CGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGF 496


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 137/291 (47%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y++ +     P++     L+   C  G   +    +C  V   V  N  TYNIL      
Sbjct: 241 YSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCK 300

Query: 218 -GMQTLEE-----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
            GM          MI+ G  PD  T+NT +  +C    V EA  LF+     G T   P 
Sbjct: 301 KGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGIT---PD 357

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y I+I+   +N+R++E  SL   M      P++ TY  +++G+C +G++  A++   
Sbjct: 358 VWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFS 417

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            + + G  P+++TYN  L  LC  +  D+A+ L+  M E G  P+V +YN+LI+ Y +  
Sbjct: 418 AIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSK 477

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             D A   + EM +R    D  TY  +IDGL    ++  A  L   + + G
Sbjct: 478 RIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG 528



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-----GMQTLEE--- 224
           +P +   N+++D LCK GLV  A  +   V  + + P+  TY  L     G+    E   
Sbjct: 215 RPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTR 274

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+      + +TYN  ID  CK  M+ +A D+   M  +G     P   T+  ++ 
Sbjct: 275 LLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQ---RPDLVTFNTLMS 331

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                + + E   L       G  PDV +Y  ++ G C   +++EA     +M  K   P
Sbjct: 332 GYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAP 391

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +IVTY+  +  LC +     A  L+  + + G  P+V TYN+++    ++   D A E +
Sbjct: 392 NIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELF 451

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + M +RG   +V +Y ++I+G     +++EA  L EE+  + L
Sbjct: 452 NLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNL 494



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL-------GMQT-----LEEMIQMG 229
           L++ LCK GL   A  +  +++ +V +PN   YN++       G+ T       +++  G
Sbjct: 189 LINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRG 248

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD FTY   I  FC      E   L   M  +   ++     TY I+I AL +   + 
Sbjct: 249 IDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLN---VYTYNILIDALCKKGMLG 305

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   +   MI  G  PD+ T+  ++ G CL   V EA K  +     G  PD+ +YN  +
Sbjct: 306 KAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILI 365

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C N   DEAL L+ +M      P++ TY+ LI    + G    A+E +  +   G +
Sbjct: 366 IGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPS 425

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +V TY +M+D L     V++A  L   +  +GL
Sbjct: 426 PNVITYNIMLDALCKIQLVDKAIELFNLMFERGL 459



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 19/264 (7%)

Query: 181 NLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+DALCK G++  A  +    ++   +P+  T+N L              +  +   +
Sbjct: 292 NILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAE 351

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD ++YN  I  +CK   + EA  LF  M  K     +P   TY+ +I  L ++ R
Sbjct: 352 CGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKL---APNIVTYSSLIDGLCKSGR 408

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +   + L   + + G  P+V TY  +L+ +C    V++A +    M  +G  P++ +YN 
Sbjct: 409 ISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNI 468

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C +K  DEA+ L+  M      P   TYN LI    + G    A+E ++ M   G
Sbjct: 469 LINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG 528

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEA 431
              DV TY ++ D     SK++  
Sbjct: 529 PPVDVITYNILFDAF---SKIQHV 549



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 26/274 (9%)

Query: 136 RLVCSMLDYMKRNNKVF---VPVDVLL---MILKQYTEK---IKVKTQPEINALNLLLDA 186
           RL+C M+D    N  V+   + +D L    M+ K +  +   I+   +P++   N L+  
Sbjct: 274 RLLCDMVD-RNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSG 332

Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPD 233
            C    V  A  +        + P+  +YNIL             +    +M     AP+
Sbjct: 333 YCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPN 392

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TY++ ID  CK+  ++ A +LF  +   G    SP   TY IM+ AL +   +++   
Sbjct: 393 IVTYSSLIDGLCKSGRISYAWELFSAIHDGGP---SPNVITYNIMLDALCKIQLVDKAIE 449

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M   G  P+VS+Y  ++ G C + +++EA    EEM  +   PD VTYNC +  LC
Sbjct: 450 LFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLC 509

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
            +     A  L+  M + G    V TYN+L   +
Sbjct: 510 KSGRISHAWELFNVMHDGGPPVDVITYNILFDAF 543



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 3/250 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            +I M   P    +N  + +  K +    A  L + M  +G T   P+  T +I+I    
Sbjct: 68  RLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGIT---PSIVTLSILINCYC 124

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
               M   FS+LG ++  G   +  T   +++G+C+ G+V +A +F + +  +G+  D V
Sbjct: 125 HLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEV 184

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  LC      EA  L  +M      P+V  YNM++    + G    A + + ++
Sbjct: 185 TYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDV 244

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             RG   DV TY  +I G     +  E   LL ++V++ + L    ++  +  L   G L
Sbjct: 245 VGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGML 304

Query: 464 GAIHKLSDHM 473
           G  H + + M
Sbjct: 305 GKAHDMRNLM 314



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 119/289 (41%), Gaps = 32/289 (11%)

Query: 162 LKQYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           +K Y   I +  Q       P I  L++L++  C  G + +A                 +
Sbjct: 91  MKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFA-----------------F 133

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
           ++LGM     +++ G+  +  T  T +   C    V +A +  + +  +G  +   T   
Sbjct: 134 SVLGM-----VLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVT--- 185

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L +     E F LL  M      P+V  Y  +++G+C  G V EA     ++ 
Sbjct: 186 YGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVV 245

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            +G  PD+ TY C +   C      E  RL   M++     +V TYN+LI    + G   
Sbjct: 246 GRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLG 305

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            A +  + M +RG   D+ T+  ++ G    + V EA  L +     G+
Sbjct: 306 KAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGI 354


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 16/290 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E +     P      +L+D LCK G+V  A  + + +  K  +PNA TYN L      
Sbjct: 290 FNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCL 349

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + L+ M+  G AP   +YN  I+ +CK R + EA  L   M  K  T   P 
Sbjct: 350 NNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELT---PD 406

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY+ ++  L Q  R +E  +L   M +SG LPD+ TY  +L+G+C  G ++EA K L+
Sbjct: 407 TVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLK 466

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M      PDIV YN  ++ +      + A  L+ ++   G  P+++TY ++I    + G
Sbjct: 467 SMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEG 526

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             D A+E + +M+  G   +  +Y V+I G         A  L++E+V K
Sbjct: 527 LSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGK 576



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 19/305 (6%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL 217
           L +L++  EK     +P + A   ++D+LCK  LV D  + + + V   + P+  TY+ +
Sbjct: 217 LQLLRKMEEK---GCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTI 273

Query: 218 --GMQTL----------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
             G  +L           EM+     P+  T+   +D  CK  MV+EA  +FE M  KG+
Sbjct: 274 LHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGA 333

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P A TY  ++     N++M+E   +L  M++ GC P V +Y  ++ G C   +++E
Sbjct: 334 ---EPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDE 390

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A   L EM  K   PD VTY+  ++ LC      EAL L+  M   G  P + TY+ L+ 
Sbjct: 391 AKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLD 450

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
              + G  D A +    M +     D+  Y ++I+G+F   K+E A  L  ++   G++ 
Sbjct: 451 GLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQP 510

Query: 446 PYRKF 450
             R +
Sbjct: 511 TIRTY 515



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 17/294 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           +E +     P++   + +L   C  G ++ A  +    V   V PN  T+ IL       
Sbjct: 256 SEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKE 315

Query: 218 GMQT-----LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           GM +      E M + G  P+ +TYN  +D +C    + EA  + + M  KG    +P  
Sbjct: 316 GMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGC---APVV 372

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y I+I    +  R++E  SLL  M      PD  TY  +++G+C  G+ +EA    +E
Sbjct: 373 HSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKE 432

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M + G  PD++TY+  L  LC + + DEAL+L   M E    P +  YN+LI   F  G+
Sbjct: 433 MCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGK 492

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            + A E + ++   G    + TY +MI GL      +EA  L  ++ + G  LP
Sbjct: 493 LEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGF-LP 545



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 158/368 (42%), Gaps = 58/368 (15%)

Query: 163 KQYTEKIKVKTQPE-------INALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTY 214
           KQY+  + +  Q +       + +LN+L++ LC+   V +A ++  K  K  ++P+A T+
Sbjct: 106 KQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITF 165

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L             +    EM++ GH PD  +Y+T I+  CK+   + A  L   M  
Sbjct: 166 NTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEE 225

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL-------- 314
           KG     P    Y  +I +L ++  + +   LL  M++ G  PDV TY  +L        
Sbjct: 226 KGC---KPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGH 282

Query: 315 ---------------------------EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
                                      +G+C  G V EA    E M  KG  P+  TYN 
Sbjct: 283 LNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNA 342

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C N   DEA ++   M++ GC P V +YN+LI+ Y +    D A     EM ++ 
Sbjct: 343 LMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE 402

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              D  TY  ++ GL    + +EA  L +E+ + GL      + + L  L   G L    
Sbjct: 403 LTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEAL 462

Query: 468 KLSDHMRK 475
           KL   M++
Sbjct: 463 KLLKSMQE 470



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 3/226 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + +   M++M   P    +   + +  K +  +    L   M   G T       +  I
Sbjct: 76  ALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVT---HNVYSLNI 132

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L + + +    S+LG M   G  PD  T+  ++ G C+ G+++EA     EM  +G
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + PD+++Y+  +  LC + N   AL+L  +M E GC P++  Y  +I    +    + A 
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAM 252

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   EM  RG   DV TY  ++ G      + EA  L  E+V + +
Sbjct: 253 DLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNV 298



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +   + ++ +  +     SL   M   G   +V +   ++  +C    V  A   
Sbjct: 90  PSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISV 149

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L +M   G  PD +T+N  +   C      EA+ L+  M+  G  P V +Y+ +I+   +
Sbjct: 150 LGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCK 209

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G    A +   +M+++GC  ++  Y  +ID L   + V +A  LL E+V++G+      
Sbjct: 210 SGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           + + L     +G L     L + M
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEM 293


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 194/429 (45%), Gaps = 39/429 (9%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           D   ++  +V  L +   D+S     +E AL    + LT D V+ VL+R + + + A+ F
Sbjct: 81  DPDGETALEVQNLLKTYRDSS--VSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVF 138

Query: 102 FMWA---GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR-----NNKVFV 153
           F WA   G +  Y+     +N ++DIL     + ++F  +  + D M +     N + F 
Sbjct: 139 FNWASRCGXESGYSPGCGVHNEILDILG----RMRRFHEMTQLFDEMSKRKGLXNERTFG 194

Query: 154 PVDVLLMILKQYTEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
            +        +  E +K+         + ++ A   LL +LC+   V+ AE +    KN+
Sbjct: 195 VLLNRYAAAHKTEEAVKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNE 254

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
             P+  + N++              +   ++I     PD FTY   I++  KA  ++ A 
Sbjct: 255 FPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAV 314

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            LF+ M  KG    +P       +I AL    R+ E   +L  M    C PDV+TY  ++
Sbjct: 315 KLFQAMWEKGC---NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLI 371

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
           + +C   + E+ Y+ L++M  KG  P+  TY   LK     K  +E   +  RM   GC 
Sbjct: 372 KHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLLK---STKKPEEVPGILERMERNGCR 428

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
            +   YN+++ +Y + G       T  EM++ G   D  TY +MI GL+D  ++++A   
Sbjct: 429 MNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSY 488

Query: 435 LEEVVNKGL 443
            +++   G+
Sbjct: 489 FKQMTLMGM 497



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 11/293 (3%)

Query: 186 ALCKCGLV---DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           AL +C L    D    + KR ++  +P    +N       E     G++P    +N  +D
Sbjct: 108 ALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGXES----GYSPGCGVHNEILD 163

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
              + R   E   LF+ M  +    +    +T+ +++       + EE   +       G
Sbjct: 164 ILGRMRRFHEMTQLFDEMSKRKGLXNE---RTFGVLLNRYAAAHKTEEAVKIFYKRKGLG 220

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              D+  ++ +L  +C    VE A +FL       +PPDI + N  L   C   +  EA 
Sbjct: 221 FELDLIAFQTLLMSLCRYKHVEMA-EFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAK 279

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           R +  +I   C P   TY + I+   + G+   A + +  M ++GC  DV     +ID L
Sbjct: 280 RFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDAL 339

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
               ++ EA  +L E+  +  +     ++S +  L  I     +++L D M +
Sbjct: 340 CFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQ 392


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 24/348 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL--------KQYTE 167
           + Y  +ID L       + +RL   MLD     N V     +    +        K + E
Sbjct: 325 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKE 384

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----- 219
            I+   +P++  LN  +D + K G V+    I + +++    P+  +Y+IL  G+     
Sbjct: 385 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 444

Query: 220 -----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                     M Q G A D   YN  +D FCK+  V +A ++ E M+ K      PT  T
Sbjct: 445 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK---CVQPTVAT 501

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  ++  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  LEEM 
Sbjct: 502 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM 561

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P++ T+N  L  L   +  +EAL  +  M E+ C P+  TY++LI+    + + +
Sbjct: 562 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 621

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            AF  W +M K+G   +V TY  MI GL     + +A  L E     G
Sbjct: 622 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 669



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 17/301 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGM------------Q 220
           +P+  +   ++  LCK G +  AE +  +++  +  P A  YN + M            +
Sbjct: 147 KPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYK 206

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE + + G  P   ++N+ +    K R V EA  LFE M+      + P + TY I+I 
Sbjct: 207 LLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD----AEPNSSTYNIIID 262

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    R+EE + +L  M ++   P++ T   +++ +C A K+EEAYK  E    +G  P
Sbjct: 263 MLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNP 322

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTY   +  L      DEA RL+ +M++ G   +   Y  LI  +F  G  +   + +
Sbjct: 323 DCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVF 382

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            E+ +RGC  D+      +D +F   +VE+   + E++ + G     R +   +  L+  
Sbjct: 383 KELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKA 442

Query: 461 G 461
           G
Sbjct: 443 G 443



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 20/297 (6%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI- 216
           L +L+Q  E   V  +  ++    L+ AL + G V  A  +   VK   ++P+   YN+ 
Sbjct: 65  LELLRQMQE---VGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVC 121

Query: 217 -----------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                      +  +   E+   G  PD+ +Y + I   CKA  + EA +LF  M  + S
Sbjct: 122 IDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 181

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P A  Y  MI+      R E+ + LL  +   GC+P V ++  +L  +    KV+E
Sbjct: 182 V---PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDE 238

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A    E M  K   P+  TYN  + +LC     +EA R+   M     +P++ T N+++ 
Sbjct: 239 ALSLFEVM-KKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVD 297

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              +  + + A++ +    +RGC  D  TYC +IDGL    +V+EA  L E++++ G
Sbjct: 298 RLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAG 354



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 50/348 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + + N +L  L K   VD A ++ + +K   +PN++TYNI+              + L
Sbjct: 218 PSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRIL 277

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +EM      P+  T N  +D  CKAR + EA  +FE    +G    +P   TY  +I  L
Sbjct: 278 DEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGC---NPDCVTYCSLIDGL 334

Query: 283 VQNDRMEECFSLL------------------------------GH-----MINSGCLPDV 307
            +  +++E + L                               GH     +I  GC PD+
Sbjct: 335 GKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDL 394

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
           +     ++ +  AG+VE+     E++ + G+ PD+ +Y+  +  L       E   ++  
Sbjct: 395 TLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHA 454

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M + G     + YN ++  + + G+   A+E   EM ++     V TY  ++DGL    +
Sbjct: 455 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 514

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++EA  L EE  +KG++L    + S +     +G +   + + + M K
Sbjct: 515 LDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK 562



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 129/325 (39%), Gaps = 51/325 (15%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E +K   +P  +  N+++D LC  G V+ A  I   +++  + PN  T NI+        
Sbjct: 244 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 303

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  E   Q G  PD  TY + ID   K   V EA  LFE M   G   ++P   
Sbjct: 304 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHN-ANPV-- 360

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGC------------------------------ 303
            Y  +I     + R E+   +   +I  GC                              
Sbjct: 361 VYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 420

Query: 304 -----LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
                LPDV +Y  ++ G+  AG+  E       M  +G+  D   YN  +   C +   
Sbjct: 421 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 480

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
            +A  +   M E    P+V TY  ++    ++   D A+  + E   +G   +V  Y  +
Sbjct: 481 HKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSL 540

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGL 443
           IDG     +++EA  +LEE++ KGL
Sbjct: 541 IDGFGKVGRIDEAYLILEEMMKKGL 565



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 16/222 (7%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTL---------- 222
           +  A N ++D  CK G V  A  I + +K K V+P   TY  +  G+  +          
Sbjct: 463 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 522

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EE    G   +   Y++ ID F K   + EA  + E M  KG T   P   T+  ++ AL
Sbjct: 523 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT---PNVYTWNSLLDAL 579

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V+ + + E       M    C P+  TY  ++ G+C   K  +A+ F ++M  +G  P++
Sbjct: 580 VKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNV 639

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           VTY   +  L    N  +A  L+ R    G  P   ++N LI
Sbjct: 640 VTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 681



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 4/249 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M ++   P    Y   I    +AR    A +L   M+  G  +       +  ++ AL +
Sbjct: 36  MRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVG---VHLFTTLVRALAR 92

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++ +  +L+  +  S   PD+  Y   ++    AG V+ A KF  E+  +G  PD V+
Sbjct: 93  EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVS 152

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   + VLC      EA  L+ +M      P    YN +I  Y   G  + A++    + 
Sbjct: 153 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 212

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
           +RGC   V ++  ++  L    KV+EA  L  EV+ K  +     ++  +  L + G + 
Sbjct: 213 ERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVE 271

Query: 465 AIHKLSDHM 473
             +++ D M
Sbjct: 272 EAYRILDEM 280



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 2/201 (0%)

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           A +  ALV+  R+++    +  M      P  S Y  ++  +  A + E A + L +M  
Sbjct: 14  ADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQE 73

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            GY   +  +   ++ L       +AL L   +      P +  YN+ I  + + G  D 
Sbjct: 74  VGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 133

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-VNKGLKLPYRKFDSYL 454
           A + +HE+  +G   D  +Y  MI  L    ++ EA  L  ++   + +   Y  +++ +
Sbjct: 134 ACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAY-AYNTMI 192

Query: 455 MQLSVIGDLGAIHKLSDHMRK 475
           M     G     +KL + +R+
Sbjct: 193 MGYGSAGRFEDAYKLLERLRE 213


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 177/410 (43%), Gaps = 50/410 (12%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQ-RFQFEEKIAFR 100
           +  S  V D  +L E      +    +E  L  L   L+   V  VL+ + + + + AF 
Sbjct: 56  ESRSRLVRDTCRLLEL---RESWSPKLEAQLRQLLRVLSPPQVRAVLRAQARGDVRRAFE 112

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLL 159
           FF WA  Q  Y H P  ++ M+ +LS+T+      R+V  M+   ++R  + F       
Sbjct: 113 FFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFA------ 166

Query: 160 MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
            ++  Y+   K+++              P+I+  N+ ++ L   G VD A          
Sbjct: 167 QLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKA---------- 216

Query: 207 VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++  E M ++G  PD +TYN  I   C AR V +A ++   M   G  
Sbjct: 217 ------------LEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNG-- 262

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEE 325
              P   +Y  ++  L +  R+EE   LL  M N +G  PD  TY  ++ G+   G  +E
Sbjct: 263 -CPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADE 321

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +FL E   K +  D V Y+  +   C N    EA  + G MI  GC P V TY+ ++ 
Sbjct: 322 ALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVD 381

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            +  +GE D A +    M K  C  +  T+  +++GL    K  EA  LL
Sbjct: 382 GFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELL 431



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 41/282 (14%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           HAP+ F  +  +      R+   A  +   M  +G    +   + +A ++++  +  ++ 
Sbjct: 125 HAPEVF--DEMLSLLSNTRLHDPARRVVRLMIRRGVRRGT---EQFAQLMLSYSRAGKLR 179

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +L  M   GC PD+S     +  + +AG+V++A +F E M   G  PD+ TYNC +
Sbjct: 180 SAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLI 239

Query: 350 KVLCDNKNGDEALRLYGRMIEVGC------------------------------------ 373
           K LC  +   +A+ + G M++ GC                                    
Sbjct: 240 KGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGL 299

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
           +P   TYN+LI    + G  D A E   E + +    D   Y  ++       ++ EA  
Sbjct: 300 FPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKE 359

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++ E+++KG +     + + +     IG+L    K+  HM K
Sbjct: 360 IVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYK 401



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 17/285 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-----ETICKRVK-NKVKPNANTYNIL-------GMQT 221
           P+    N+L+  L K G  D A     E+  KR + ++V  +A  ++           + 
Sbjct: 301 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 360

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + EMI  G  PD  TY+T +D FC+   + +A  + + M         P   T+  ++  
Sbjct: 361 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKND---CKPNTVTHTALLNG 417

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  +  E + LL         P   TY  V+ G    GK++E+   + +M  KG+ P 
Sbjct: 418 LCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPT 477

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V  N  +  LC ++   EA     +    GC  +V  +  +I  +   G+ + A     
Sbjct: 478 TVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +M       DV TY V++D L    +++EA  L+E+++N+G+ LP
Sbjct: 538 DMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGV-LP 581



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 111/292 (38%), Gaps = 48/292 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P       LL+ LCK G    A E + K  +    P+  TY+++               
Sbjct: 405 KPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD 464

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + +M+Q G  P     N  I   CK R   EA D  E  ++KG TI+            
Sbjct: 465 VVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS 524

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY +++ AL +  R++E   L+  M+N G LP   
Sbjct: 525 RQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPV 584

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V+   C  G +E+    LE+M  +        YN  ++ LC     +EA  L  ++
Sbjct: 585 TYRTVIHRYCEKGNLEDLLNLLEKMLARQEMKS--AYNQVVEKLCAFGKLNEAYSLLYKI 642

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           +        QT ++L+  +   G    A+     M +R    DV   C  +D
Sbjct: 643 LRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDV-KLCQKVD 693


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 158/362 (43%), Gaps = 44/362 (12%)

Query: 97   IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
            +  +FF WA  + NY H+   Y  +I  L   +    Q+  +  M+  M RN        
Sbjct: 1095 VKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVE----QYGEMWKMIQEMVRN-------- 1142

Query: 157  VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
                        I V T  E   L+ ++  L    +V  A TI  ++K  K +P A  YN
Sbjct: 1143 -----------PICVVTPTE---LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYN 1188

Query: 216  ILGM------------QTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
             + +            Q   EM   GH  PD  TY+  I  FCK      A  L   M+ 
Sbjct: 1189 SMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKE 1248

Query: 263  KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
             G     PT K Y ++I    + +      SL   M +  C PDV TY E++ G+  AG+
Sbjct: 1249 IGM---QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGR 1305

Query: 323  VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            ++EAY F  EM  +G  PD V  N  +  L      D+A++L+  M  + C PSV TYN 
Sbjct: 1306 IDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNT 1365

Query: 383  LISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +I   FE         +W E M + G +    TY ++IDG    +++E+A  LLEE+  K
Sbjct: 1366 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 1425

Query: 442  GL 443
            G 
Sbjct: 1426 GF 1427



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 19/286 (6%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTL---------- 222
            +P+   +N +++ L K G +D A  + + ++  +  P+  TYN + ++ L          
Sbjct: 1322 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTI-IKALFESKSRASEV 1380

Query: 223  ----EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                E M + G +P +FTY+  ID FCK   + +A  L E M  KG     P    Y  +
Sbjct: 1381 PSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFP---PCPAAYCSL 1437

Query: 279  IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            I AL +  R +    L   +  +        Y  +++ +  AG++++A    +EM   G 
Sbjct: 1438 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 1497

Query: 339  PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             PD+  YN  +  L      DEAL    RM E GC P + +YN++++   + G P  A E
Sbjct: 1498 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 1557

Query: 399  TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
                M +     DV +Y  ++  L      EEA  L++E+   G +
Sbjct: 1558 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFE 1603



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 136/314 (43%), Gaps = 17/314 (5%)

Query: 174  QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNA----NTYNILG--------MQ 220
            +P++     L+  L K G +D A    C+  +   +P+     N  N LG        M+
Sbjct: 1287 RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMK 1346

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKAR-MVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              +EM  +   P   TYNT I    +++   +E    FE M+  G    SP++ TY+I+I
Sbjct: 1347 LFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI---SPSSFTYSILI 1403

Query: 280  VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                + +RME+   LL  M   G  P  + Y  +++ +  A + + A +  +E+      
Sbjct: 1404 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 1463

Query: 340  PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
                 Y   +K L      D+A+ ++  M ++GC P V  YN L+S     G  D A  T
Sbjct: 1464 SSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 1523

Query: 400  WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
               M + GC  D+++Y ++++GL        A  +L  +    ++     +++ L  LS 
Sbjct: 1524 MRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSH 1583

Query: 460  IGDLGAIHKLSDHM 473
             G      KL   M
Sbjct: 1584 AGMFEEASKLMKEM 1597



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 17/275 (6%)

Query: 162  LKQYTEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
            +K + E   ++  P +   N ++ AL   K    +      +  ++ + P++ TY+IL  
Sbjct: 1345 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 1404

Query: 218  ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       M  LEEM + G  P    Y + ID   KA+    A +LF+ ++      
Sbjct: 1405 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK---ENC 1461

Query: 268  SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             S +A+ YA+MI  L +  R+++  ++   M   GC PDV  Y  ++ G+   G ++EA 
Sbjct: 1462 GSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEAL 1521

Query: 328  KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              +  M   G  PDI +YN  L  L        A+ +   M +    P V +YN ++   
Sbjct: 1522 STMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 1581

Query: 388  FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               G  + A +   EM+  G   D+ TY  +++ +
Sbjct: 1582 SHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI 1616



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 279  IVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            +V ++ N +M  +  ++   +    C P    Y  ++  +   G+ E+ ++   EM  +G
Sbjct: 1155 VVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEG 1214

Query: 338  YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
            +  PD VTY+  +   C     D A++L   M E+G  P+ + Y MLI+++F+  +  GA
Sbjct: 1215 HCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGA 1274

Query: 397  FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
               + EM  + C  DV TY  +I GL    +++EA     E+  +G +      D+  M 
Sbjct: 1275 LSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP-----DTVFMN 1329

Query: 457  LSVIGDLGAIHKLSDHMRKF 476
             ++I  LG   +L D M+ F
Sbjct: 1330 -NMINFLGKAGRLDDAMKLF 1348


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 144/294 (48%), Gaps = 17/294 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           +E ++    P +   N ++   C  G ++ A  + K  V   V PN  T+ IL       
Sbjct: 257 SEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKE 316

Query: 218 GMQT-----LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           GM +      E M + G  PD  TYN  +D +C  R++ EA  +FE M  KG    +P A
Sbjct: 317 GMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGC---APGA 373

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y I+I    ++ RM+E  SLL  M +    PD  TY  +++G+C  G+ +EA    +E
Sbjct: 374 HSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKE 433

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M + G  P++VTY   L   C + + DEAL+L   M E    P++  Y +LI   F  G+
Sbjct: 434 MCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGK 493

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            + A E + ++   G   D+ TY VMI GL      +EA  L  ++ + G  LP
Sbjct: 494 LEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGF-LP 546



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 153/319 (47%), Gaps = 23/319 (7%)

Query: 163 KQYTEKIKVKTQPE-------INALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTY 214
           KQY+  + +  Q +       + +LN+L++ LC+   VD++ ++  K  K  + P+A T+
Sbjct: 107 KQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITF 166

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L             ++   EM++ GH P+  +Y T I+  CK    + A D+F+ M  
Sbjct: 167 NALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQ 226

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P   TY+ +I +L ++  + +    L  M+  G  P+V TY  ++ G C  G+
Sbjct: 227 NGC---KPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQ 283

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           + EA +  +EM  +   P+ VT+   +  LC      EA  ++  M E G  P + TYN 
Sbjct: 284 LNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNA 343

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+  Y      + A + +  M ++GCA    +Y ++I+G     +++EA  LL E+ +K 
Sbjct: 344 LMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKA 403

Query: 443 LKLPYRKFDSYLMQLSVIG 461
           L      + + +  L  +G
Sbjct: 404 LNPDTVTYSTLMQGLCQLG 422



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           + E +K   +P + +   +++ LCK G    A  + K++ +N  KPN  TY+ +      
Sbjct: 186 FNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCK 245

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  M+ L EM++ G  P+ FTYN+ +  FC    + EA  LF+ M  +      P 
Sbjct: 246 DRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVM---PN 302

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ I++  L +   + E   +   M   G  PD+STY  +++G CL   + EA K  E
Sbjct: 303 TVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFE 362

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  KG  P   +YN  +   C ++  DEA  L   M      P   TY+ L+    +LG
Sbjct: 363 IMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLG 422

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            P  A   + EM   G   ++ TY +++DG      ++EA  LL+ +  K L+
Sbjct: 423 RPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLE 475



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 174 QPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   + ++D+LCK  LV D  E + + V+  + PN  TYN +              +
Sbjct: 230 KPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATR 289

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+     P+  T+   +D  CK  MV+EA  +FE M  KG     P   TY  ++ 
Sbjct: 290 LFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGV---EPDISTYNALMD 346

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  M E   +   MI  GC P   +Y  ++ G C + +++EA   L EM +K   P
Sbjct: 347 GYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNP 406

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTY+  ++ LC      EAL L+  M   G  P++ TY +L+  + + G  D A +  
Sbjct: 407 DTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLL 466

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
             M ++    ++  Y ++I+G+F   K+E A  L  ++   G +   R +
Sbjct: 467 KSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTY 516



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 19/274 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL- 217
           ++ +  TEK     +P+I+  N L+D  C   L++ A+ + +  ++    P A++YNIL 
Sbjct: 324 LVFETMTEK---GVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILI 380

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                          L EM      PD  TY+T +   C+     EA +LF+ M + G  
Sbjct: 381 NGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGP- 439

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY I++    ++  ++E   LL  M      P++  Y  ++EGM +AGK+E A
Sbjct: 440 --HPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVA 497

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   ++   G  PDI TY   +K L      DEA  L+ +M + G  P+  +YN++I  
Sbjct: 498 KELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQG 557

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           + +  +   A     EM  +  + ++ T+ +++D
Sbjct: 558 FLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 16/231 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           I+    P  ++ N+L++  CK   +D A+++   + +K + P+  TY+ L          
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +   +EM   G  P+  TY   +D FCK   + EA  L + M+ K      P    Y
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL---EPNIVHY 481

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I+I  +    ++E    L   +   G  PD+ TY  +++G+   G  +EAY    +M +
Sbjct: 482 TILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMED 541

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            G+ P+  +YN  ++    N++   A+RL   M+      ++ T+ ML+ +
Sbjct: 542 DGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDL 592



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%)

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C    V+ +   L +M   G  PD +T+N  +  LC+     EA+ L+  M++ G  P+
Sbjct: 138 LCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPN 197

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V +Y  +I+   + G    A + + +M++ GC  +V TY  +ID L     V +A   L 
Sbjct: 198 VISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLS 257

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+V +G+      ++S +     +G L    +L   M
Sbjct: 258 EMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM 294


>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 182/423 (43%), Gaps = 37/423 (8%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           +S   KL    +        ++  L SLG+ L+ D V  VL R     +    FF WA  
Sbjct: 79  LSPAEKLRGVFLQKLKGKSAIQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVTFFNWAIR 138

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKA---------------KQFRLVCSMLDYMKRNNKVF 152
           +   + +  +Y +++  L   K+ +                  R +   +D   R + V 
Sbjct: 139 EPGVSKDVDSYCVILRALGRRKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSFVRAHYVR 198

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN 212
             +++      + +E   VK   E  + N LL  LC+   V  A ++    K K+  ++ 
Sbjct: 199 RAIELF-----EESESYGVKCSTE--SFNALLRCLCERSHVSAANSVFNAKKGKIPFDSC 251

Query: 213 TYNIL-----------GMQ-TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           +YNI+           GM+  L+EM++ G  PD  +Y+  I+   +A  + ++ ++F+ M
Sbjct: 252 SYNIMISGWSKLGEIEGMEKVLKEMVEGGFVPDCLSYSHLIEGLGRAGRINDSVEIFDNM 311

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           + KGS +    A  Y  MI   +     +E       M++  C P++ TY +++ G+   
Sbjct: 312 KHKGSVLD---ANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKG 368

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
            KV +A +  EEM ++G  P       FLK LC       A+ +Y +  + GC  S   Y
Sbjct: 369 RKVSDALEIFEEMLSRGILPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAY 428

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            +L+      G+       W EM + G   DV+ Y  ++DGL     +E A  ++EE + 
Sbjct: 429 KLLLKRLSRFGKCGMLLNVWDEMQECGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMR 488

Query: 441 KGL 443
           KG 
Sbjct: 489 KGF 491


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 165/360 (45%), Gaps = 32/360 (8%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ-YTEKIKVKTQPEINA---------- 179
           +A Q R    ML+ M  +++   P +     L Q + E+  ++    + A          
Sbjct: 193 RAHQVRTAVLMLEEM--SSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 180 ---LNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
              +N+L++  CK G V D    I + + +  +P+  TYN               ++ ++
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMD 310

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M+Q GH PD FTYN  ++  CK   + EA  +   M  +G     P   T+  +I AL 
Sbjct: 311 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL---PDITTFNTLIAALC 367

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
             +R+EE   L   +   G  PDV T+  ++  +C  G    A +  EEM N G  PD V
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +  LC      +AL L   M   GC  S  TYN +I    +    + A E + +M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           D +G +++  T+  +IDGL    K+++A  L+ +++++GL+     ++S L      GD+
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDI 547



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQM 228
           P++   N++++ LCK G ++ A+ I  + V     P+  T+N L         LEE + +
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G +PD +T+N  I+  CK      A  LFE M+  G T   P   TY  +I  
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT---PDEVTYNTLIDN 435

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ +   LL  M ++GC     TY  +++G+C   ++EEA +  ++M  +G   +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+N  +  LC +K  D+A  L  +MI  G  P+  TYN +++ Y + G+   A +   
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   G   DV TY  +I+GL    + + A  +L  +  KG++   + ++  L  L
Sbjct: 556 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G  PD  T+NT +   C+A  V  A  + E M ++G    +P   T+  ++   V
Sbjct: 171 EMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGV---APDETTFTTLMQGFV 227

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +E    +   M+  GC     T   ++ G C  G+VE+A  ++++    G+ PD +
Sbjct: 228 EEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 287

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN F+  LC N +   AL++   M++ G  P V TYN++++   + G+ + A    ++M
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             RGC  D+ T+  +I  L   +++EEA  L  +V  KG+      F+  +  L  +GD 
Sbjct: 348 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 464 GAIHKLSDHMR 474
               +L + M+
Sbjct: 408 HLALRLFEEMK 418



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L++ALCK G    A  + + +KN    P+  TYN L             +  
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 448

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++M   G      TYNT ID  CK   + EA ++F+ M  +G    S  A T+  +I  
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI---SRNAITFNTLIDG 505

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ ++++ F L+  MI+ G  P+  TY  +L   C  G +++A   LE M   G+  D
Sbjct: 506 LCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC       AL++   M   G  P+ + YN ++   F       A   + 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++  GL      ++EA   + E+V+KG  +P  +F S+ M    +
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF-IP--EFSSFRMLAEGL 682

Query: 461 GDLG 464
            +LG
Sbjct: 683 LNLG 686



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 177/411 (43%), Gaps = 37/411 (9%)

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAY-------------NLMIDILSSTKYKAKQFR 136
           R Q +   A R    A  +D++A  P  Y             +LM  +++  + +  Q +
Sbjct: 49  REQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVK 108

Query: 137 L--VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194
           L  V S LD  +   ++F   D + +IL Q      +  Q +    N LL+ L +   + 
Sbjct: 109 LGVVHSFLDSYE-GQQLFD--DAVDLILNQLQPLFGI--QADTVVYNHLLNVLVEGSKMK 163

Query: 195 YAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAI 241
             E++   +  + +KP+  T+N L             +  LEEM   G APD  T+ T +
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLM 223

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
             F +   +  A  +   M   G    S T  T  ++I    +  R+E+    +   I  
Sbjct: 224 QGFVEEGSIEAALRVKARMLEMGC---SATKVTVNVLINGYCKLGRVEDALGYIQQEIAD 280

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G  PD  TY   + G+C    V  A K ++ M  +G+ PD+ TYN  +  LC N   +EA
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             +  +M++ GC P + T+N LI+        + A +   ++  +G + DV T+ ++I+ 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSD 471
           L        A  L EE+ N G       +++ +  L  +G LG A+  L D
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD 451



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 112/261 (42%), Gaps = 39/261 (14%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL--MILKQYTEKIKV 171
           + + YN +ID L S     K        LD +K       P   +    I+    +K+++
Sbjct: 425 DEVTYNTLIDNLCSLGKLGKA-------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 172 KTQPEI-----------NAL--NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL 217
           +   E+           NA+  N L+D LCK   +D A   I + +   ++PN  TYN +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSI 537

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           LE M   G   D  TY T I+  CKA     A  +   MR KG 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-KVE 324
               PT K Y  ++ +L + + + +  SL   M   G  PD  TYK V  G+C  G  ++
Sbjct: 598 ---RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIK 654

Query: 325 EAYKFLEEMGNKGYPPDIVTY 345
           EA+ F+ EM +KG+ P+  ++
Sbjct: 655 EAFDFMLEMVDKGFIPEFSSF 675


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 133/472 (28%), Positives = 204/472 (43%), Gaps = 81/472 (17%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNY-AHEPLAYNLMIDILS 126
           ME AL+ + VP  +  +V  + +     ++ FRFF+WA +   + A E  + +L+ D+L 
Sbjct: 46  MEPALEPM-VPFLSPKIVTSIIQNPPNPQLGFRFFIWASNFKRFRAWE--SCDLITDLLI 102

Query: 127 STKYKAKQFRLVCSMLDYMK------RNNKVFVPVDVLLMI------LKQYTEKIKVKTQ 174
           +         L C  L+ +K       N+  FV + V L +      ++ +         
Sbjct: 103 NQN----GLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCT 158

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P++   N++LD L +   +  A T+  R+ K    PN  T++IL             +  
Sbjct: 159 PDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHL 218

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM Q G  PD FTY   I   C+++ V +A  LF+ M+  G     P   T   ++  
Sbjct: 219 FDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGV---GPDFVTCNALLNG 275

Query: 282 LVQNDRMEECFSLL-------------GH----------------------MINSGCLPD 306
               DR++E FSLL             G+                      MI     PD
Sbjct: 276 FCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPD 335

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  Y  +++G+  AGKV +A + L EM   G  PD V YN  +K  CD     EA  L  
Sbjct: 336 VYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQL 395

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            +    C+P+V+TY++LIS     G    A E ++EM+K GC     T+  +IDGL    
Sbjct: 396 EISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTG 455

Query: 427 KVEEACFL---LEEVVNKGLKL-----PYRKFDSYLMQLSV--IGDLGAIHK 468
           ++E+A  L   +E   N  L L     P    DS  +Q  V  + D G IHK
Sbjct: 456 QLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHK 507



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 126/268 (47%), Gaps = 30/268 (11%)

Query: 201 KRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
           K +++ VKP+   Y I+             ++ L EM + G  PD   YN  I  FC   
Sbjct: 326 KMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMG 385

Query: 249 MVTEAADL-FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           +++EA  L  E  R        P  KTY+I+I  + +N    +   +   M   GC P  
Sbjct: 386 LLSEARSLQLEISRHD----CFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSA 441

Query: 308 STYKEVLEGMCLAGKVEEA----YK---------FLEEMGNKGYPPDIVTYNCFLKVLCD 354
            T+  +++G+C  G++E+A    YK         FL       +  D  +    ++ LCD
Sbjct: 442 VTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCD 501

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           +    +A R+  ++ + G  P + TYN+L++ + +LG  +GA++ + EM  +G + D  T
Sbjct: 502 SGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVT 561

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           Y  +I+GL    + E+A  + +++   G
Sbjct: 562 YGTLINGLLRFQREEDAYKVFDQMEKNG 589



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 27/296 (9%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL 217
           L +L + TE   V   P+    N+L+   C  GL+  A ++   + ++   PN  TY+IL
Sbjct: 356 LELLNEMTESGVV---PDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSIL 412

Query: 218 --GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE------- 258
             GM          +   EM ++G  P   T+N+ ID  CK   + +A  LF        
Sbjct: 413 ISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRN 472

Query: 259 ---FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
              F+R          + +   M+  L  +  + + + +L  + +SG  P + TY  ++ 
Sbjct: 473 PSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVN 532

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G C  G    AYK   EM  KG  PD VTY   +  L   +  ++A +++ +M + GC P
Sbjct: 533 GFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTP 592

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
               Y  +++      E   AF  W +  +   +Q+ D     I+G F+  +VE+A
Sbjct: 593 DAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQE-DEAIKAIEGYFEKQEVEKA 647



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 63/261 (24%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN------ANTYNILG 218
           + E  K+   P     N L+D LCK G ++ A  +  +++    P+          ++L 
Sbjct: 429 FNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLD 488

Query: 219 MQTLEEMIQM--------------------GHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             +L++M++                     G AP  +TYN  ++ FCK      A  LF 
Sbjct: 489 SASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFR 548

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M+ KG    SP   TY  +I  L++  R E+ + +   M  +GC PD + Y+ ++  MC
Sbjct: 549 EMQFKGL---SPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMC 605

Query: 319 -----------------------------LAG-----KVEEAYKFLEEMGNKGYPPDIVT 344
                                        + G     +VE+A + L EM  K    D+  
Sbjct: 606 RRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGP 665

Query: 345 YNCFLKVLCDNKNGDEALRLY 365
           Y  +L  LC  +   EAL+++
Sbjct: 666 YAIWLIGLCQTRRVGEALKIF 686


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 165/360 (45%), Gaps = 32/360 (8%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ-YTEKIKVKTQPEINA---------- 179
           +A Q R    ML+ M  +++   P +     L Q + E+  ++    + A          
Sbjct: 193 RAHQVRTAVIMLEEM--SSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 180 ---LNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
              +N+L++  CK G V D    I + + +  +P+  TYN               ++ ++
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMD 310

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M+Q GH PD FTYN  ++  CK   + EA  +   M  +G     P   T+  +I AL 
Sbjct: 311 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL---PDITTFNTLIAALC 367

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
             +R+EE   L   +   G  PDV T+  ++  +C  G    A +  EEM N G  PD V
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +  LC      +AL L   M   GC  S  TYN +I    +    + A E + +M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           D +G +++  T+  +IDGL    K+++A  L+ +++++GL+     ++S L      GD+
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQM 228
           P++   N++++ LCK G ++ A+ I  + V     P+  T+N L         LEE + +
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G +PD +T+N  I+  CK      A  LFE M+  G T   P   TY  +I  
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT---PDEVTYNTLIDN 435

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ +   LL  M ++GC     TY  +++G+C   ++EEA +  ++M  +G   +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+N  +  LC +K  D+A  L  +MI  G  P+  TYN +++ Y + G+   A +   
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   G   DV TY  +I+GL    + + A  +L  +  KG++   + ++  L  L
Sbjct: 556 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G  PD  T+NT +   C+A  V  A  + E M ++G    +P   T+  ++   V
Sbjct: 171 EMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGV---APDETTFTTLMQGFV 227

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +E    +   M+  GC     T   ++ G C  G+VE+A  ++++    G+ PD +
Sbjct: 228 EEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 287

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN F+  LC N +   AL++   M++ G  P V TYN++++   + G+ + A    ++M
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             RGC  D+ T+  +I  L   +++EEA  L  +V  KG+      F+  +  L  +GD 
Sbjct: 348 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 464 GAIHKLSDHMR 474
               +L + M+
Sbjct: 408 HLALRLFEEMK 418



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L++ALCK G    A  + + +KN    P+  TYN L             +  
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 448

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++M   G      TYNT ID  CK   + EA ++F+ M  +G    S  A T+  +I  
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI---SRNAITFNTLIDG 505

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ ++++ F L+  MI+ G  P+  TY  +L   C  G +++A   LE M   G+  D
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC       AL++   M   G  P+ + YN ++   F       A   + 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++  GL      ++EA   + E+V+KG  +P  +F S+ M    +
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF-IP--EFSSFRMLAEGL 682

Query: 461 GDLG 464
            +LG
Sbjct: 683 LNLG 686



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 174/411 (42%), Gaps = 37/411 (9%)

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAY-------------NLMIDILSSTKYKAKQFR 136
           R Q +   A R    A  +D++A  P  Y             +LM  +++  + +  Q +
Sbjct: 49  REQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVK 108

Query: 137 L--VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194
           L  V S LD  +        VD++L  L+          Q +    N LL+ L +   + 
Sbjct: 109 LGVVHSFLDSYEGQQLFDDAVDLILNQLQPL-----FGIQADTVVYNHLLNVLVEGSKMK 163

Query: 195 YAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAI 241
             E++   +  + +KP+  T+N L             +  LEEM   G APD  T+ T +
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLM 223

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
             F +   +  A  +   M   G    S T  T  ++I    +  R+E+    +   I  
Sbjct: 224 QGFVEEGSIEAALRVKARMLEMGC---SATKVTVNVLINGYCKLGRVEDALGYIQQEIAD 280

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G  PD  TY   + G+C    V  A K ++ M  +G+ PD+ TYN  +  LC N   +EA
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             +  +M++ GC P + T+N LI+        + A +   ++  +G + DV T+ ++I+ 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSD 471
           L        A  L EE+ N G       +++ +  L  +G LG A+  L D
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD 451



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 39/261 (14%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL--MILKQYTEKIKV 171
           + + YN +ID L S     K        LD +K       P   +    I+    +K+++
Sbjct: 425 DEVTYNTLIDNLCSLGKLGKA-------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 172 KTQPEI-----------NAL--NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL 217
           +   E+           NA+  N L+D LCK   +D A E I + +   ++PN  TYN +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           LE M   G   D  TY T I+  CKA     A  +   MR KG 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-KVE 324
               PT K Y  ++ +L + + + +  SL   M   G  PD  TYK V  G+C  G  ++
Sbjct: 598 ---RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIK 654

Query: 325 EAYKFLEEMGNKGYPPDIVTY 345
           EA+ F+ EM +KG+ P+  ++
Sbjct: 655 EAFDFMLEMVDKGFIPEFSSF 675



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G   D   Y  +L  +    K++       EMG +G  PD+VT+N  +K LC       A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + +   M   G  P   T+  L+  + E G  + A      M + GC+    T  V+I+G
Sbjct: 201 VIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +VE+A   +++ +  G +     +++++  L     +G   K+ D M
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 312


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 138/307 (44%), Gaps = 45/307 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P+    N+++ +LC  G +D A + + + + +  +P   TY IL             ++
Sbjct: 190 SPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALK 249

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------------- 264
            ++EM+  G  PD FTYNT I   CK  MV  A ++   +  KG                
Sbjct: 250 LMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309

Query: 265 ----------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                           S    P   TY+I+I  L ++ ++EE  +LL  M   G  PD  
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           +Y  ++   C  G+++ A +FLE M + G  PDIV YN  L  LC N   D+AL ++G++
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            EVGC P+  +YN + S  +  G+   A     EM   G   D  TY  MI  L     V
Sbjct: 430 GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489

Query: 429 EEACFLL 435
           +EA  LL
Sbjct: 490 DEAFELL 496



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 20/298 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK   E +    +P++   N ++  +CK G+VD A  + + ++ K  +P+  +YNIL   
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRA 307

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G + + +M      P+  TY+  I T C+   + EA +L + M+ KG T  
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT-- 365

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P A +Y  +I A  +  R++     L  MI+ GCLPD+  Y  VL  +C  GK ++A +
Sbjct: 366 -PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 424

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              ++G  G  P+  +YN     L  + +   AL +   M+  G  P   TYN +IS   
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484

Query: 389 ELGEPDGAFETWHEMDKRGCA--QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             G  D AFE    +D R C     V TY +++ G     ++E+A  +LE +V  G +
Sbjct: 485 REGMVDEAFELL--VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCR 540



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M+ LE+  Q    PD F YN  I+ FCK   + +A  + + MR+K     SP   TY IM
Sbjct: 147 MEILEKFGQ----PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF---SPDTVTYNIM 199

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I +L    +++    +L  +++  C P V TY  ++E   L G V+EA K ++EM ++G 
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+ TYN  ++ +C     D A  +   +   GC P V +YN+L+      G+ +   +
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 319

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              +M    C  +V TY ++I  L    K+EEA  LL+ +  KGL
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 25/269 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP++ A N L++  CK   +D A  +  R+++K                        +PD
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSK----------------------DFSPD 192

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TYN  I + C    +  A  +   + +       PT  TY I+I A +    ++E   
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC---QPTVITYTILIEATMLEGGVDEALK 249

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L+  M++ G  PD+ TY  ++ GMC  G V+ A++ +  +  KG  PD+++YN  L+ L 
Sbjct: 250 LMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
           +    +E  +L  +M    C P+V TY++LI+     G+ + A      M ++G   D  
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +Y  +I       +++ A   LE +++ G
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDG 398



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 1/155 (0%)

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   LL  M+  G  PDV    ++++G      + +A + +E +   G  PD+  YN  +
Sbjct: 107 ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALI 165

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C     D+A R+  RM      P   TYN++I      G+ D A +  +++    C 
Sbjct: 166 NGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ 225

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             V TY ++I+       V+EA  L++E++++GLK
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 177/410 (43%), Gaps = 50/410 (12%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQ-RFQFEEKIAFR 100
           +  S  V D  +L E      +    +E  L  L   L+   V  VL+ + + + + AF 
Sbjct: 56  ESRSRLVRDTCRLLEL---RESWSPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFE 112

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLL 159
           FF WA  Q  Y H P  ++ M+ +LS+T+      R+V  M+   ++R  + F       
Sbjct: 113 FFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFA------ 166

Query: 160 MILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
            ++  Y+   K+++              P+I+  N+ ++ L   G VD A          
Sbjct: 167 QLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKA---------- 216

Query: 207 VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++  E M ++G  PD +TYN  I   C AR V +A ++   M   G  
Sbjct: 217 ------------LEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNG-- 262

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEE 325
              P   +Y  ++  L +  R+EE   LL  M N +G  PD  TY  ++ G+   G  +E
Sbjct: 263 -CPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADE 321

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +FL E   K +  D V Y+  +   C N    EA  + G MI  GC P V TY+ ++ 
Sbjct: 322 ALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVD 381

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            +  +GE D A +    M K  C  +  T+  +++GL    K  EA  LL
Sbjct: 382 GFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELL 431



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 41/282 (14%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           HAP+ F  +  +      R+   A  +   M  +G    +   + +A ++++  +  ++ 
Sbjct: 125 HAPEVF--DEMLSLLSNTRLHDPARRVVRLMIRRGVRRGT---EQFAQLMLSYSRAGKLR 179

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +L  M   GC PD+S     +  + +AG+V++A +F E M   G  PD+ TYNC +
Sbjct: 180 SAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLI 239

Query: 350 KVLCDNKNGDEALRLYGRMIEVGC------------------------------------ 373
           K LC  +   +A+ + G M++ GC                                    
Sbjct: 240 KGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGL 299

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
           +P   TYN+LI    + G  D A E   E + +    D   Y  ++       ++ EA  
Sbjct: 300 FPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKE 359

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++ E+++KG +     + + +     IG+L    K+  HM K
Sbjct: 360 IVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYK 401



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 17/285 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-----ETICKRVK-NKVKPNANTYNIL-------GMQT 221
           P+    N+L+  L K G  D A     E+  KR + ++V  +A  ++           + 
Sbjct: 301 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 360

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + EMI  G  PD  TY+T +D FC+   + +A  + + M         P   T+  ++  
Sbjct: 361 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKND---CKPNTVTHTALLNG 417

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  +  E + LL         P   TY  V+ G    GK++E+   + +M  KG+ P 
Sbjct: 418 LCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPT 477

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V  N  +  LC ++   EA     +    GC  +V  +  +I  +   G+ + A     
Sbjct: 478 TVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +M       DV TY V++D L    +++EA  L+E+++N+G+ LP
Sbjct: 538 DMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGV-LP 581



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 111/292 (38%), Gaps = 48/292 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P       LL+ LCK G    A E + K  +    P+  TY+++               
Sbjct: 405 KPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD 464

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + +M+Q G  P     N  I   CK R   EA D  E  ++KG TI+            
Sbjct: 465 VVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS 524

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY +++ AL +  R++E   L+  M+N G LP   
Sbjct: 525 RQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPV 584

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V+   C  G +E+    LE+M  +        YN  ++ LC     +EA  L  ++
Sbjct: 585 TYRTVIHRYCEKGNLEDLLNLLEKMLARQEMKS--AYNQVVEKLCAFGKLNEAYSLLYKI 642

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           +        QT ++L+  +   G    A+     M +R    DV   C  +D
Sbjct: 643 LRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDV-KLCQKVD 693


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 24/348 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL--------KQYTE 167
           + Y  +ID L       + +RL   MLD     N V     +    +        K + E
Sbjct: 193 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 252

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----- 219
            I+   +P++  LN  +D + K G V+    I + +++    P+  +Y+IL  G+     
Sbjct: 253 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 312

Query: 220 -----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                     M Q G A D   YN  +D FCK+  V +A ++ E M+ K      PT  T
Sbjct: 313 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK---CVQPTVAT 369

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  ++  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  LEEM 
Sbjct: 370 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM 429

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P++ T+N  L  L   +  +EAL  +  M E+ C P+  TY++LI+    + + +
Sbjct: 430 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 489

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            AF  W +M K+G   +V TY  MI GL     + +A  L E     G
Sbjct: 490 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 537



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 145/315 (46%), Gaps = 17/315 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILG 218
           M  K + E      +P+  +   ++  LCK G +  AE +  +++  +  P A  YN + 
Sbjct: 1   MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 60

Query: 219 M------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           M            + LE + + G  P   ++N+ +    K R V EA  LFE M+     
Sbjct: 61  MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD--- 117

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
            + P + TY I+I  L    R+EE + +L  M ++   P++ T   +++ +C A K+EEA
Sbjct: 118 -AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 176

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           YK  E    +G  PD VTY   +  L      DEA RL+ +M++ G   +   Y  LI  
Sbjct: 177 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 236

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +F  G  +   + + E+ +RGC  D+      +D +F   +VE+   + E++ + G    
Sbjct: 237 FFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPD 296

Query: 447 YRKFDSYLMQLSVIG 461
            R +   +  L+  G
Sbjct: 297 VRSYSILIHGLTKAG 311



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 145/322 (45%), Gaps = 16/322 (4%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E +K   +P  +  N+++D LC  G V+ A  I   +++  + PN  T NI+        
Sbjct: 112 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 171

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  E   Q G  PD  TY + ID   K   V EA  LFE M   G   ++P   
Sbjct: 172 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHN-ANPV-- 228

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  +I     + R E+   +   +I  GC PD++     ++ +  AG+VE+     E++
Sbjct: 229 VYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 288

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            + G+ PD+ +Y+  +  L       E   ++  M + G     + YN ++  + + G+ 
Sbjct: 289 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 348

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A+E   EM ++     V TY  ++DGL    +++EA  L EE  +KG++L    + S 
Sbjct: 349 HKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSL 408

Query: 454 LMQLSVIGDLGAIHKLSDHMRK 475
           +     +G +   + + + M K
Sbjct: 409 IDGFGKVGRIDEAYLILEEMMK 430



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 16/159 (10%)

Query: 183 LLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+D   K G +D A  I + + K  + PN  T+N L             +   + M +M 
Sbjct: 408 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK 467

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+ +TY+  I+  C+ +   +A   ++ M+ +G     P   TY  MI  L +   + 
Sbjct: 468 CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLV---PNVVTYTTMISGLAKVGNIT 524

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           + +SL      +G +PD +++  ++EGM  A +  EAY+
Sbjct: 525 DAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 563


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 156/362 (43%), Gaps = 44/362 (12%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  +FF WA  + NY H+   Y  +I  L   +   + ++++  M         V  P+ 
Sbjct: 105 VKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEM---------VRSPIC 155

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN 215
           V+  +                  L+ ++  L    ++  A TI  ++K  K +P A  YN
Sbjct: 156 VVTPM-----------------ELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYN 198

Query: 216 ILGMQTLEE------------MIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            + +  + E            M   GH  PD  TY+  I  FCK      A  L   M+ 
Sbjct: 199 SMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKE 258

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     PTAK Y ++I    + D +    SL   M    C PDV TY E++ G+  AG+
Sbjct: 259 NGM---QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGR 315

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EAY F  EM  +G  PD V  N  +  L      D+ L+L+  M    C P+V TYN 
Sbjct: 316 IDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNT 375

Query: 383 LISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +I   FE         +W E M   G +    TY ++IDG    +++E+A  LLEE+  K
Sbjct: 376 IIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEK 435

Query: 442 GL 443
           G 
Sbjct: 436 GF 437



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 17/304 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------ 217
           Y E  +   +P+   +N +++ L K G +D    + + +  +   PN  TYN +      
Sbjct: 323 YHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFE 382

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                       E M   G +P  FTY+  ID FCK   + +A  L E M  KG     P
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF---PP 439

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y  +I AL +  R +    L   +  +        Y  +++ +  AG++++A    
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLF 499

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           +EM   G  P++  YN  +  L      DEAL    +M E GC P + +YN++++   + 
Sbjct: 500 DEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKT 559

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G P  A E    M       D  +Y  ++  L      EEA  L++E+   G +     +
Sbjct: 560 GGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITY 619

Query: 451 DSYL 454
            S L
Sbjct: 620 SSIL 623



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 15/228 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P+  TY+IL             M  LEEM + G  P    Y + ID   KA+    A 
Sbjct: 402 ISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +LF+ ++       S +A+ YA+MI  L +  R+++  +L   M   GC P+V  Y  ++
Sbjct: 462 ELFQELK---ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALM 518

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G+  A  ++EA   + +M   G  PDI +YN  L  L        A+ +   M      
Sbjct: 519 SGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIK 578

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           P   +YN ++S     G  + A E   EM+  G   D+ TY  +++ +
Sbjct: 579 PDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEA 361
           C P    Y  ++  +   G+ E+ ++   EM N+G+  PD VTY+  +   C     D A
Sbjct: 190 CQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSA 249

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           +RL   M E G  P+ + Y M+IS++F+L    GA   + EM    C  DV TY  +I G
Sbjct: 250 IRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRG 309

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           L    +++EA     E+  +G K      D+ +M  ++I  LG   +L D ++ F
Sbjct: 310 LGKAGRIDEAYHFYHEMQREGCKP-----DTVVMN-NMINFLGKAGRLDDGLKLF 358


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 165/360 (45%), Gaps = 32/360 (8%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ-YTEKIKVKTQPEINA---------- 179
           +A Q R    ML+ M  +++   P +     L Q + E+  ++    + A          
Sbjct: 193 RAHQVRTAVLMLEEM--SSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 180 ---LNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
              +N+L++  CK G V D    I + + +  +P+  TYN               ++ ++
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMD 310

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M+Q GH PD FTYN  ++  CK   + EA  +   M  +G     P   T+  +I AL 
Sbjct: 311 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL---PDITTFNTLIAALC 367

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
             +R+EE   L   +   G  PDV T+  ++  +C  G    A +  EEM N G  PD V
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +  LC      +AL L   M   GC  S  TYN +I    +    + A E + +M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           D +G +++  T+  +IDGL    K+++A  L+ +++++GL+     ++S L      GD+
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQM 228
           P++   N++++ LCK G ++ A+ I  + V     P+  T+N L         LEE + +
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G +PD +T+N  I+  CK      A  LFE M+  G T   P   TY  +I  
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT---PDEVTYNTLIDN 435

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ +   LL  M ++GC     TY  +++G+C   ++EEA +  ++M  +G   +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+N  +  LC +K  D+A  L  +MI  G  P+  TYN +++ Y + G+   A +   
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   G   DV TY  +I+GL    + + A  +L  +  KG++   + ++  L  L
Sbjct: 556 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G  PD  T+NT +   C+A  V  A  + E M ++G    +P   T+  ++   V
Sbjct: 171 EMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGV---APDETTFTTLMQGFV 227

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +E    +   M+  GC     T   ++ G C  G+VE+A  ++++    G+ PD +
Sbjct: 228 EEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 287

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN F+  LC N +   AL++   M++ G  P V TYN++++   + G+ + A    ++M
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             RGC  D+ T+  +I  L   +++EEA  L  +V  KG+      F+  +  L  +GD 
Sbjct: 348 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 464 GAIHKLSDHMR 474
               +L + M+
Sbjct: 408 HLALRLFEEMK 418



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L++ALCK G    A  + + +KN    P+  TYN L             +  
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 448

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++M   G      TYNT ID  CK   + EA ++F+ M  +G    S  A T+  +I  
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI---SRNAITFNTLIDG 505

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ ++++ F L+  MI+ G  P+  TY  +L   C  G +++A   LE M   G+  D
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC       AL++   M   G  P+ + YN ++   F       A   + 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++  GL      ++EA   + E+V+KG  +P  +F S+ M    +
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF-IP--EFSSFRMLAEGL 682

Query: 461 GDLG 464
            +LG
Sbjct: 683 LNLG 686



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 177/414 (42%), Gaps = 43/414 (10%)

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAY-------------NLMIDILSSTKYKAKQFR 136
           R Q +   A R    A  +D++A  P  Y             +LM  +++  + +  Q +
Sbjct: 49  REQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVK 108

Query: 137 L--VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194
           L  V S LD  +        VD++L  L+          Q +    N LL+ L +   + 
Sbjct: 109 LGVVHSFLDSYEGQQLFDDAVDLILNQLQPL-----FGIQADTVVYNHLLNVLVEGSKMK 163

Query: 195 YAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAI 241
             E++   +  + +KP+  T+N L             +  LEEM   G APD  T+ T +
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLM 223

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTIS---SPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
             F +   + EAA     +R K   +    S T  T  ++I    +  R+E+    +   
Sbjct: 224 QGFVEEGSI-EAA-----LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 277

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
           I  G  PD  TY   + G+C    V  A K ++ M  +G+ PD+ TYN  +  LC N   
Sbjct: 278 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 337

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           +EA  +  +M++ GC P + T+N LI+        + A +   ++  +G + DV T+ ++
Sbjct: 338 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSD 471
           I+ L        A  L EE+ N G       +++ +  L  +G LG A+  L D
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD 451



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 39/261 (14%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL--MILKQYTEKIKV 171
           + + YN +ID L S     K        LD +K       P   +    I+    +K+++
Sbjct: 425 DEVTYNTLIDNLCSLGKLGKA-------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 172 KTQPEI-----------NAL--NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL 217
           +   E+           NA+  N L+D LCK   +D A E I + +   ++PN  TYN +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           LE M   G   D  TY T I+  CKA     A  +   MR KG 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-KVE 324
               PT K Y  ++ +L + + + +  SL   M   G  PD  TYK V  G+C  G  ++
Sbjct: 598 ---RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIK 654

Query: 325 EAYKFLEEMGNKGYPPDIVTY 345
           EA+ F+ EM +KG+ P+  ++
Sbjct: 655 EAFDFMLEMVDKGFIPEFSSF 675



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G   D   Y  +L  +    K++       EMG +G  PD+VT+N  +K LC       A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + +   M   G  P   T+  L+  + E G  + A      M + GC+    T  V+I+G
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +VE+A   +++ +  G +     +++++  L     +G   K+ D M
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 312


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 139/290 (47%), Gaps = 16/290 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E   +   P +   N+L+D  CK G V  AE + K +    V+P+  TYN L        
Sbjct: 175 EMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWT 234

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  + MI  G  PD F+Y+  I+ +CKA+ + EA  LF  M  +GST   P   
Sbjct: 235 EVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGST---PNNV 291

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I  L Q  R+ E   L  +M  +G LP++ TY  +L+G C  G + +A++    M
Sbjct: 292 SYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAM 351

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    P++V YN  +  +C + N  +A  L+  +  +G  P+VQ Y  +I+   + G  
Sbjct: 352 QSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLL 411

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A E +  M+  GC  D  +Y V+I G         A  L+ E+ ++G 
Sbjct: 412 DEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGF 461



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 146/317 (46%), Gaps = 22/317 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P    LN+L++  C+   VD     + K +K  ++P   T+  L             ++
Sbjct: 7   SPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVE 66

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++M+  G  PD++TY T I+  CK      AA LF+ M   G  ++     TY+ +I 
Sbjct: 67  LFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLN---VVTYSTLIH 123

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L +  R+ E   +  +M      P + TY  +++G+C   + +EA   L EM +    P
Sbjct: 124 SLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMP 183

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI---SMYFELGEPDGAF 397
           ++VT+N  +   C       A  +   M E+G  P V TYN L+   SM+ E+ E    F
Sbjct: 184 NVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLF 243

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +    M  +GC  DV +Y ++I+G     +++EA  L  E++++G       +++ +  L
Sbjct: 244 DV---MITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGL 300

Query: 458 SVIGDLGAIHKLSDHMR 474
             +G L     L  +M 
Sbjct: 301 CQLGRLREAQDLFKNMH 317



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 120/275 (43%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L+ +LCK   V+ A  I   +K K + P   TY  L                L EM  + 
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  T+N  +DTFCK   V  A  + + M   G     P   TY  ++        + 
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGV---EPDVVTYNSLMYGYSMWTEVV 237

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   L   MI  GC PDV +Y  ++ G C A +++EA +   EM ++G  P+ V+YN  +
Sbjct: 238 EARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLI 297

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC      EA  L+  M   G  P++ TY +L+  + + G    AF  +  M      
Sbjct: 298 HGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLK 357

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            ++  Y ++++ +     +++A  L  E+   GL+
Sbjct: 358 PNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQ 392



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%)

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +G  P+  T   ++   C   +V+  +  L +    G  P IVT+   +  L       +
Sbjct: 4   AGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQ 63

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+ L+  M+  GC P   TY  +I+   ++GE   A   + +M++ GC  +V TY  +I 
Sbjct: 64  AVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIH 123

Query: 421 GLFDCSKVEEA 431
            L    +V EA
Sbjct: 124 SLCKYRRVNEA 134



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P+  T N  +   C  +  D    +  + I++G  P++ T+  LI+   ++G+   A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            E + +M  RGC  D  TY  +I+GL         C + E  +  GL   ++K +    Q
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGL---------CKIGETALAAGL---FKKMEEAGCQ 112

Query: 457 LSVIGDLGAIHKLSDHMR 474
           L+V+     IH L  + R
Sbjct: 113 LNVVTYSTLIHSLCKYRR 130


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 139/291 (47%), Gaps = 17/291 (5%)

Query: 168 KIKVK-TQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           ++K+K ++P+      L++AL K G V  A +     ++  + PN  TYN+L        
Sbjct: 125 EMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVG 184

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                +    EM + G  P   TYN  +D  C A  V  A  LF  M   G    SP + 
Sbjct: 185 QLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGC---SPDSY 241

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ ++  L ++ R+EE   +   M++ G   D+  Y  +L  +  AG ++  +K ++EM
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG+ PD  ++N  +  L      D A  ++ RM+E GC P + +YN+LI  Y   G+ 
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDA 361

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A +   EM + G   +  TY  +I  L    +V+EA  +LEE+   G +
Sbjct: 362 AQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCR 412



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 137/301 (45%), Gaps = 16/301 (5%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKP 209
            F  V  L M L  + E  +   QP +   N+LLDALC  G V  A  +  K   +   P
Sbjct: 179 AFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSP 238

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           ++ TY+ L              +   EM+  G A D   YN+ + T  KA  +     L 
Sbjct: 239 DSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLM 298

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + M  KG     P A ++  ++ AL + ++ +    +   M+ SGC PD+ +Y  +++  
Sbjct: 299 KEMSRKGF---HPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY 355

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
              G   +A + LEEM   G+ P+  TYN  +  L  +   DEA  +   M   GC P V
Sbjct: 356 ARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDV 415

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TYN L+ M  + GE   A   + +M  +G   D  +Y V IDGL    +++EA  L ++
Sbjct: 416 VTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKD 475

Query: 438 V 438
           +
Sbjct: 476 M 476



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   NLL+DA  K G +D A  +   +K +  +P+  TYNIL              + 
Sbjct: 168 PNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKL 227

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +M   G +PD++TY+T ++   K+  V EA  +F  M  +G  +       Y  ++  
Sbjct: 228 FHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVD---LVNYNSLLAT 284

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   M+  + L+  M   G  PD  ++  +++ +  A K + A +    M   G  PD
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPD 344

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +++YN  +       +  +A ++   M+E G  P  +TYN LI      G+ D AF    
Sbjct: 345 LISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLE 404

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM+  GC  DV TY  ++D L    + + A  L +++ +KG++
Sbjct: 405 EMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVE 447



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 129/306 (42%), Gaps = 61/306 (19%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P ++A   L+D L   G  + AE + K+                      ++Q G   D 
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKK----------------------LVQKGCQLDR 100

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           F YN  I  F ++  +  A ++F  M+ KGS                             
Sbjct: 101 FAYNVLIRYFGRSGQLDSAMEMFREMKIKGSE---------------------------- 132

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
                     PD  TY  ++  +  AG+V+EA  F + M  +G  P+I TYN  +     
Sbjct: 133 ----------PDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK 182

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               D AL L+  M   G  PSV TYN+L+      G    A + +H+M   GC+ D  T
Sbjct: 183 VGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYT 242

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM- 473
           Y  +++GL    +VEEA  +  E+V++G+ +    ++S L  L+  G++  + KL   M 
Sbjct: 243 YSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMS 302

Query: 474 RKFYNP 479
           RK ++P
Sbjct: 303 RKGFHP 308



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 16/235 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N LL  L K G +D    + K +  K   P+A ++N +              +    M++
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVE 338

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  +YN  ID++ +     +A  + E M   G     P  KTY  +I  L  + +
Sbjct: 339 SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFI---PETKTYNSLIHWLATDGQ 395

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++E F++L  M  +GC PDV TY  +++ +   G+ + A +  ++M +KG  PD ++Y  
Sbjct: 396 VDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAV 455

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            +  L  +   DEAL L+  M  VGC      Y +LI      G+ +   +  HE
Sbjct: 456 RIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHE 510


>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
 gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 185/417 (44%), Gaps = 24/417 (5%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           +S   KL    +        +E+AL    V L+ D V  VL R     +    FF WA  
Sbjct: 100 LSPEEKLRGVFVQKIKGKSGIERALTECSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIK 159

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM-LDYMKRNNKVF-VPVDVLLMILKQY 165
           Q   + +  +YN++I  L   K+     + +  + ++ +  N++ F + +D L+   + Y
Sbjct: 160 QPMISKDVDSYNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVY 219

Query: 166 TE-------KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN-IL 217
                    + +   + +  +LN+LL  LC+   V  A +    VK K+  N  TYN I+
Sbjct: 220 KAIQMFGNLEEEFGFERDAESLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTYNVII 279

Query: 218 G-----------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           G            +  EEM + G +PD  +++  ++   +A  + +A  +F  M  KG  
Sbjct: 280 GGWSKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCV 339

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P    Y  MI   +     +EC      +++  C P++ TY  ++ G+  A KV +A
Sbjct: 340 ---PDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKVADA 396

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +  +EM ++G      T   F++ LC       A+ +Y +  +VGC  S+  Y +L+  
Sbjct: 397 LEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYKLLLMR 456

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               G+     + W EM + G + D++ Y  +I GL +  + E A  ++EE + KG 
Sbjct: 457 LSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNIGQFENAVLVMEESMRKGF 513



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 23/222 (10%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI--CKRVKNKVKPNANTYNI 216
           +MI     EK  V   P+ N  N ++      G  D       C   KN   PN +TY  
Sbjct: 327 VMIFGSMEEKGCV---PDTNVYNAMISNFISVGNFDECMKYYRCLLSKN-CDPNIDTYTR 382

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++  +EM+  G      T  + I+  C       A  ++   R  G
Sbjct: 383 MISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARKVG 442

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
             IS      Y ++++ L +  +      +   M  SG   D+  Y+ ++ G+C  G+ E
Sbjct: 443 CKIS---LSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNIGQFE 499

Query: 325 EAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLY 365
            A   +EE   KG+ P   +      K+L  NK  + A RL+
Sbjct: 500 NAVLVMEESMRKGFCPSRFICSKLNNKLLASNKV-ERAYRLF 540


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 165/360 (45%), Gaps = 32/360 (8%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ-YTEKIKVKTQPEINA---------- 179
           +A Q R    ML+ M  +++   P +     L Q + E+  ++    + A          
Sbjct: 101 RAHQVRTAVLMLEEM--SSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 158

Query: 180 ---LNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
              +N+L++  CK G V D    I + + +  +P+  TYN               ++ ++
Sbjct: 159 KVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMD 218

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M+Q GH PD FTYN  ++  CK   + EA  +   M  +G     P   T+  +I AL 
Sbjct: 219 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL---PDITTFNTLIAALC 275

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
             +R+EE   L   +   G  PDV T+  ++  +C  G    A +  EEM N G  PD V
Sbjct: 276 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 335

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +  LC      +AL L   M   GC  S  TYN +I    +    + A E + +M
Sbjct: 336 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 395

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           D +G +++  T+  +IDGL    K+++A  L+ +++++GL+     ++S L      GD+
Sbjct: 396 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 455



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 145/325 (44%), Gaps = 55/325 (16%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLE 223
           Y+E      +P++   N L+ ALC+   V  A  + + + ++ V P+  T+  L    +E
Sbjct: 77  YSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVE 136

Query: 224 E------------MIQMGHA-----------------------------------PDNFT 236
           E            M++MG +                                   PD  T
Sbjct: 137 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQIT 196

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YNT ++  C+   V  A  + + M  +G     P   TY I++  L +N ++EE   +L 
Sbjct: 197 YNTFVNGLCQNDHVGHALKVMDVMVQEG---HDPDVFTYNIVVNCLCKNGQLEEAKGILN 253

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M++ GCLPD++T+  ++  +C   ++EEA     ++  KG  PD+ T+N  +  LC   
Sbjct: 254 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 313

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           +   ALRL+  M   GC P   TYN LI     LG+   A +   +M+  GC +   TY 
Sbjct: 314 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 373

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNK 441
            +IDGL    ++EEA    EEV ++
Sbjct: 374 TIIDGLCKKMRIEEA----EEVFDQ 394



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQM 228
           P++   N++++ LCK G ++ A+ I  + V     P+  T+N L         LEE + +
Sbjct: 227 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 286

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G +PD +T+N  I+  CK      A  LFE M+  G T   P   TY  +I  
Sbjct: 287 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT---PDEVTYNTLIDN 343

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ +   LL  M ++GC     TY  +++G+C   ++EEA +  ++M  +G   +
Sbjct: 344 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 403

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+N  +  LC +K  D+A  L  +MI  G  P+  TYN +++ Y + G+   A +   
Sbjct: 404 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 463

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   G   DV TY  +I+GL    + + A  +L  +  KG++   + ++  L  L
Sbjct: 464 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 519



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G  PD  T+NT +   C+A  V  A  + E M ++G    +P   T+  ++   V
Sbjct: 79  EMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGV---APDETTFTTLMQGFV 135

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +E    +   M+  GC     T   ++ G C  G+VE+A  ++++    G+ PD +
Sbjct: 136 EEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 195

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN F+  LC N +   AL++   M++ G  P V TYN++++   + G+ + A    ++M
Sbjct: 196 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 255

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             RGC  D+ T+  +I  L   +++EEA  L  +V  KG+      F+  +  L  +GD 
Sbjct: 256 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 315

Query: 464 GAIHKLSDHMR 474
               +L + M+
Sbjct: 316 HLALRLFEEMK 326



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L++ALCK G    A  + + +KN    P+  TYN L             +  
Sbjct: 297 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 356

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++M   G      TYNT ID  CK   + EA ++F+ M  +G    S  A T+  +I  
Sbjct: 357 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI---SRNAITFNTLIDG 413

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ ++++ F L+  MI+ G  P+  TY  +L   C  G +++A   LE M   G+  D
Sbjct: 414 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 473

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC       AL++   M   G  P+ + YN ++   F       A   + 
Sbjct: 474 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 533

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++  GL      ++EA   + E+V+KG  +P  +F S+ M    +
Sbjct: 534 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF-IP--EFSSFRMLAEGL 590

Query: 461 GDLG 464
            +LG
Sbjct: 591 LNLG 594



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 19/330 (5%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY 214
           D + +IL Q      +  Q +    N LL+ L +   +   E++   +  + +KP+  T+
Sbjct: 35  DAVDLILNQLQPLFGI--QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF 92

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L             +  LEEM   G APD  T+ T +  F +   +  A  +   M  
Sbjct: 93  NTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 152

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G    S T  T  ++I    +  R+E+    +   I  G  PD  TY   + G+C    
Sbjct: 153 MGC---SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDH 209

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V  A K ++ M  +G+ PD+ TYN  +  LC N   +EA  +  +M++ GC P + T+N 
Sbjct: 210 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 269

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+        + A +   ++  +G + DV T+ ++I+ L        A  L EE+ N G
Sbjct: 270 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 329

Query: 443 LKLPYRKFDSYLMQLSVIGDLG-AIHKLSD 471
                  +++ +  L  +G LG A+  L D
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKD 359



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 39/261 (14%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL--MILKQYTEKIKV 171
           + + YN +ID L S     K        LD +K       P   +    I+    +K+++
Sbjct: 333 DEVTYNTLIDNLCSLGKLGKA-------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 385

Query: 172 KTQPEI-----------NAL--NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL 217
           +   E+           NA+  N L+D LCK   +D A E I + +   ++PN  TYN +
Sbjct: 386 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 445

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           LE M   G   D  TY T I+  CKA     A  +   MR KG 
Sbjct: 446 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 505

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK-VE 324
               PT K Y  ++ +L + + + +  SL   M   G  PD  TYK V  G+C  G  ++
Sbjct: 506 ---RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIK 562

Query: 325 EAYKFLEEMGNKGYPPDIVTY 345
           EA+ F+ EM +KG+ P+  ++
Sbjct: 563 EAFDFMLEMVDKGFIPEFSSF 583



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G   D   Y  +L  +    K++       EMG +G  PD+VT+N  +K LC       A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + +   M   G  P   T+  L+  + E G  + A      M + GC+    T  V+I+G
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +VE+A   +++ +  G +     +++++  L     +G   K+ D M
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 220


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 197/424 (46%), Gaps = 43/424 (10%)

Query: 66  DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA--YNLMID 123
           + + +ALD  G  L  D V+ VL+R + + + A  FF WA  +    ++P +   N ++D
Sbjct: 52  EQLYRALDQCGFDLNHDLVLDVLRRHRSDWRPAHVFFNWAS-KTTTGYQPSSDVCNEIVD 110

Query: 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI------ 177
           IL     K ++F+ +  +LD M +  ++     V   +++++    KV    ++      
Sbjct: 111 ILG----KMQRFQELHQVLDEMSKREELLDEA-VFATLVRRFVGAHKVDEAIQLFYRRKE 165

Query: 178 -------NALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------ 217
                   A   LL  LC+   V+ AE +    VK  ++ +   +N++            
Sbjct: 166 FGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSHE 225

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +   +++     PD FTY T I    K   +  A  LF  M  KG     P       
Sbjct: 226 AKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGG---KPDVVICNC 282

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I AL    R+ E   +   M   GC P+V+TY  +++ MC   ++++ Y+ ++EM  K 
Sbjct: 283 IIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMKKVYELVDEMERKK 342

Query: 338 YP--PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               P+ VTY   LK L   K   E  R+  RM   GC  +   YNM++ +Y +  + DG
Sbjct: 343 GSCLPNAVTYCYLLKSL---KEPGEVCRVLERMERNGCGMNDDVYNMVLRLYMKWDDGDG 399

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
             +TW EM++ G   D  +Y +MI   F+  +V++A   LEE+++KG+ +P R+ +  + 
Sbjct: 400 VRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEEMISKGM-VPERRTEKLVS 458

Query: 456 QLSV 459
            +++
Sbjct: 459 SMNI 462



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 115/296 (38%), Gaps = 12/296 (4%)

Query: 183 LLDALCKCGL---VDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
           L  AL +CG     D    + +R ++  +P    +N     T       G+ P +   N 
Sbjct: 54  LYRALDQCGFDLNHDLVLDVLRRHRSDWRPAHVFFNWASKTT------TGYQPSSDVCNE 107

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            +D   K +   E   + + M  +   +       +A ++   V   +++E   L     
Sbjct: 108 IVDILGKMQRFQELHQVLDEMSKREELLDEAV---FATLVRRFVGAHKVDEAIQLFYRRK 164

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             G   +   ++ +L  +C    VE+A         KG   DI  +N  L   C   N  
Sbjct: 165 EFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSH 224

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EA R++  ++   C P + TY   I    + G+   A + +  M  +G   DV     +I
Sbjct: 225 EAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPDVVICNCII 284

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           D L    ++ EA  +  ++  +G +     ++S +  +  I  +  +++L D M +
Sbjct: 285 DALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMKKVYELVDEMER 340


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 160/358 (44%), Gaps = 28/358 (7%)

Query: 131 KAKQFRLVCSMLDYMKRNN------------KVFVPVDVLLMILKQYTEKIKVKTQPEIN 178
           +A Q R    ML+ M  +             + F+    +   L+   + ++    P   
Sbjct: 209 RAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGV 268

Query: 179 ALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            +N+L++  CK G V D    I + + +  +P+  TYN               ++ ++ M
Sbjct: 269 TVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLM 328

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +Q GH PD FTYNT I+   K   + EA  +   M  +G     P   T+  +IVAL   
Sbjct: 329 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCL---PDTTTFNTLIVALSSQ 385

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +R+EE   L   +   G  PDV T+  ++  +C  G      +  EEM + G  PD VTY
Sbjct: 386 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTY 445

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC       AL L   M   GC  S  TYN +I    +    + A E + +MD 
Sbjct: 446 NILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDA 505

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +G ++   T+  +IDGL    ++++A  L+E++V +GL+     ++S L      G++
Sbjct: 506 QGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 158/348 (45%), Gaps = 31/348 (8%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVC--SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
           A++LM  ++   + +  Q R V   S ++   R  +    VD++L  L   T  ++  T 
Sbjct: 104 AFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTV 163

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
              + LN+L++                   +K+K   + YN        EM   G  PD 
Sbjct: 164 VFNHLLNVLVEG------------------SKLKLLESVYN--------EMTGRGIQPDV 197

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T NT I   C+A  V  A  + E M + G    +P   T+  ++   ++   +E    +
Sbjct: 198 VTLNTLIKALCRAHQVRTAVLMLEEMSSHGV---APDETTFTTLMQGFIEEGSIEAALRV 254

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+ +GC P   T   ++ G C  G+VE+A  ++++    G+ PD VTYN F+  LC 
Sbjct: 255 KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQ 314

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           N +   AL++   M++ G  P V TYN +I+   + GE D A    ++M  RGC  D  T
Sbjct: 315 NGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTT 374

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           +  +I  L   +++EEA  L  E+  KGL      F+  +  L  +GD
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGD 422



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L++ALCK G       + + +K+    P+  TYNIL             +  
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDL 464

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM   G      TYNT ID  CK   + EA ++F+ M  +G    S +A T+  +I  
Sbjct: 465 LNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGI---SRSAVTFNTLIDG 521

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+++   L+  M+  G  P+  TY  +L   C  G +++A   LE M   G+  D
Sbjct: 522 LCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEID 581

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC       AL+L   M   G  P+ + YN +I   F       A   + 
Sbjct: 582 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFR 641

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++   L      ++EA   L E+VNKG  +P  +F S+ M    +
Sbjct: 642 EMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGF-MP--EFSSFRMLAEGL 698

Query: 461 GDLG 464
            +LG
Sbjct: 699 LNLG 702



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 138/296 (46%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQM 228
           P++   N +++ L K G +D A+ I  + V     P+  T+N L         LEE + +
Sbjct: 335 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDL 394

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G +PD +T+N  I+  CK         LFE M++ G T   P   TY I+I  
Sbjct: 395 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCT---PDEVTYNILIDH 451

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++     LL  M ++GC     TY  +++ +C   ++EEA +  ++M  +G    
Sbjct: 452 LCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRS 511

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N  +  LC  K  D+A  L  +M++ G  P+  TYN +++ Y + G    A +   
Sbjct: 512 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILE 571

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   G   DV TY  +I+GL    + + A  LL  +  KG++   + ++  +  L
Sbjct: 572 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 627



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 133/323 (41%), Gaps = 25/323 (7%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
           V V    L ++   Y E      QP++  LN L+ ALC+   V  A              
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTA-------------- 216

Query: 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   +  LEEM   G APD  T+ T +  F +   +  A  +   M   G    SP
Sbjct: 217 --------VLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGC---SP 265

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T  T  ++I    +  R+E+    +   I  G  PD  TY   + G+C  G V  A K +
Sbjct: 266 TGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVM 325

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           + M  +G+ PD+ TYN  +  L  N   DEA  +  +M++ GC P   T+N LI      
Sbjct: 326 DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQ 385

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
              + A +   E+  +G + DV T+ ++I+ L           L EE+ + G       +
Sbjct: 386 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTY 445

Query: 451 DSYLMQLSVIGDLGAIHKLSDHM 473
           +  +  L  +G LG    L + M
Sbjct: 446 NILIDHLCSMGKLGNALDLLNEM 468



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 112/252 (44%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + EM + GH        + ++++ + R   +A DL        +         +  ++  
Sbjct: 112 VREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNV 171

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+  +++   S+   M   G  PDV T   +++ +C A +V  A   LEEM + G  PD
Sbjct: 172 LVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPD 231

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+   ++   +  + + ALR+  +M+E GC P+  T N+LI+ Y ++G  + A     
Sbjct: 232 ETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQ 291

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +    G   D  TY   + GL     V  A  +++ ++ +G       +++ +  LS  G
Sbjct: 292 QEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNG 351

Query: 462 DLGAIHKLSDHM 473
           +L     + + M
Sbjct: 352 ELDEAKGIVNQM 363



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 101/246 (41%), Gaps = 6/246 (2%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           AP +  Y   +     A        L   MR +G  + +   +++   + +  +  R ++
Sbjct: 86  APSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSF---VESYARLRRFDD 142

Query: 291 CFSLLGHMINS---GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
              L+ + +++   G   D   +  +L  +    K++       EM  +G  PD+VT N 
Sbjct: 143 AVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNT 202

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K LC       A+ +   M   G  P   T+  L+  + E G  + A     +M + G
Sbjct: 203 LIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAG 262

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
           C+    T  V+I+G     +VE+A   +++ +  G +     +++++  L   G +    
Sbjct: 263 CSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHAL 322

Query: 468 KLSDHM 473
           K+ D M
Sbjct: 323 KVMDLM 328


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/214 (35%), Positives = 119/214 (55%), Gaps = 2/214 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PTA TY  +I  L + +R  E + LL  M+ SGC+PD+ TY  ++ G C + K ++A + 
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYF 388
            E++  +G+ PD+VTY+C +  LC      EA+ L+GRMI+ G C P+  TYN LIS + 
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
            +G+ D A      M + G + DV TY  +++G    +++++A  LL ++  KGL     
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 449 KFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVI 481
            F S +  L     L  A+H L +  RK  +P +
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 265



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 19/281 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P     N L+  LCK      A  + +  V +   P+  TY  L             ++ 
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+++  G  PD  TY+  ID  CK   + EA DLF  M   GS +  P   TY  +I  
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCM--PNTVTYNSLISG 169

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +M+E  +LL  M  +G  PDV TY  ++ G C   ++++AY  L +M  KG  P+
Sbjct: 170 FCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE-TW 400
           +VT+   +  LC      +A+ + G M    C P+V TYN ++  Y  + + + A +   
Sbjct: 230 VVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFML 289

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            EMD   C  +V ++ +MI GL   ++  EA  L+EE   +
Sbjct: 290 EEMD---CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR 327



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 22/270 (8%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL-- 217
           L+ + + +    +P++   + L+D LCK G +  A  +  R+       PN  TYN L  
Sbjct: 109 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 168

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  LE M + G +PD  TY T ++ FCK   + +A DL   M  KG T 
Sbjct: 169 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT- 227

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  ++  L + +R+ +   +LG M    C P V TY  +L+G C   ++EEA 
Sbjct: 228 --PNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 328 KF-LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           KF LEEM     PP++V++N  ++ LC      EA+ L        C P V  Y  +I +
Sbjct: 286 KFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDV 342

Query: 387 YFELGEPDGAFETWHEM-DKRGCAQDVDTY 415
                + D A   + +M ++ GC  +  TY
Sbjct: 343 LCREKKVDEACRVYRKMLEEPGCLPNSITY 372


>gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Cucumis sativus]
 gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Cucumis sativus]
          Length = 1037

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 189/431 (43%), Gaps = 54/431 (12%)

Query: 50   DVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD 109
            D+  +Y+ I+ +S  +  ++KAL++  V  + + V+ +L++   +   AF FF W G Q 
Sbjct: 619  DLDAIYK-ILSSSTDWKLIKKALENCSVEFSPELVIEILRKCSLDGCAAFNFFAWVGKQP 677

Query: 110  NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE-- 167
             Y H    YN+ I I        K F+ + S+   M+R      P    +MI+ QY    
Sbjct: 678  GYNHTTETYNMAIKIAGL----GKDFKHMRSLFYEMRRRGCSITPYTWTIMIM-QYARAG 732

Query: 168  --KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLE-- 223
              +I +K+  E+  +N                         +KPNANTY  L M   E  
Sbjct: 733  LTEIALKSYEEMKEIN-------------------------IKPNANTYKYLIMSLCESK 767

Query: 224  ------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                        EMI   + PD     T +   CK   +++A    + +R  G +I    
Sbjct: 768  RRKVDEAITLFQEMIHSKYIPDKELLETYLGCLCKLSRLSDAKKCIDHLRKVGFSI---- 823

Query: 272  AKTYAIMIVALVQNDRMEECFSLLGHMI-NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY++ I AL +  +++E  +LL  ++ +     D   Y  ++ G+   G+ EEA   +
Sbjct: 824  PLTYSLYIRALCRARKLDEALTLLEEVVGDERSKLDSYIYGSLVYGLLQTGRTEEALAKM 883

Query: 331  EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
              M   G  P +  Y  F+      K    AL +  +M++ GC PS+ TY+ ++  Y  +
Sbjct: 884  NSMKQVGINPTVHVYTSFIVYSFKEKQTRRALEILAKMLQEGCEPSIATYSAIVHGYMNM 943

Query: 391  GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
            G+   A++ ++ M K G + D   Y ++I  L    + EEA  ++ +++N G+      F
Sbjct: 944  GKVCEAWKVFNYMKKYGPSPDFKAYTMLISCLCKAGRSEEALEIISDMLNNGIAPSSINF 1003

Query: 451  DSYLMQLSVIG 461
             + +  L+  G
Sbjct: 1004 RTVIFGLNREG 1014



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/452 (21%), Positives = 196/452 (43%), Gaps = 45/452 (9%)

Query: 46  DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQR-FQFEEKIAFRFFMW 104
           + VS V     A+I   N   +ME+ L +L V  +++ V  VL+R F+F   +A  FF W
Sbjct: 124 NDVSSVVHEITAVIRGGNGLVSMEERLGNLDVMFSSEIVEKVLKRCFKFPH-LALGFFNW 182

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ 164
              +D +      +N ++ I      +A+ F+L+  +L+ M+  +        LL  +K 
Sbjct: 183 VKSRDGFQCTTNVFNTVLSIAG----EARDFKLIDKLLEEMESYS--------LLKDIKT 230

Query: 165 YTEKIKVKTQPEINALNLLL-----DALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
           +T  I +    ++   +L++     ++ C+   V Y   IC  +    KP       L M
Sbjct: 231 WTILISLYGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICS-LSAAGKPE------LAM 283

Query: 220 QTLEEMIQMGHAPDNFTYNTAID-TFCKARMVT-----EAADLFEFMRTKGSTISSPTAK 273
           +  +EM + G         + +D   CK  + +     + A + +  +   +  +     
Sbjct: 284 EFYQEMAKKGI--------SVVDMKMCKMLLSSLAGSGDTASVLDIAKDMVALFNVQERD 335

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  ++ +   + R++E    +  + + G + D   ++ ++ G+C A ++E+A + +  +
Sbjct: 336 VYHYILKSFCISRRIKEALEFIRDLNSKGIVLDSEYFEILIGGLCRANRIEDALELINII 395

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG   D   Y   +          +AL L+  M E+G +P+  TY  L+   F L E 
Sbjct: 396 KRKG-DVDGKIYGIIINWYLRKNEVSKALDLFQNMKEMGYFPTTSTYTQLMQHLFSLAEY 454

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           +  FE + EM ++G   D      ++ G    +++ EA  +   + NK     ++    +
Sbjct: 455 EKGFELYKEMLEKGIELDTVAIMTVVVGNVRQNRITEAWNVFRTMENKP---TWKSCSVF 511

Query: 454 LMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485
           + +L  I     I K+ + M++  N VI  +L
Sbjct: 512 IRELFRISRTDEIVKVLNEMQEL-NIVIPDKL 542



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 218  GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             ++ L +M+Q G  P   TY+  +  +     V EA  +F +M+  G    SP  K Y +
Sbjct: 914  ALEILAKMLQEGCEPSIATYSAIVHGYMNMGKVCEAWKVFNYMKKYGP---SPDFKAYTM 970

Query: 278  MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            +I  L +  R EE   ++  M+N+G  P    ++ V+ G+   GK
Sbjct: 971  LISCLCKAGRSEEALEIISDMLNNGIAPSSINFRTVIFGLNREGK 1015



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A+ F   +G + GY     TYN  +K+    K+      L+  M   GC  +  T+ ++I
Sbjct: 666 AFNFFAWVGKQPGYNHTTETYNMAIKIAGLGKDFKHMRSLFYEMRRRGCSITPYTWTIMI 725

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS--KVEEACFLLEEVVNKG 442
             Y   G  + A +++ EM +     + +TY  +I  L +    KV+EA  L +E+++  
Sbjct: 726 MQYARAGLTEIALKSYEEMKEINIKPNANTYKYLIMSLCESKRRKVDEAITLFQEMIHSK 785

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
                   ++YL  L  +  L    K  DH+RK
Sbjct: 786 YIPDKELLETYLGCLCKLSRLSDAKKCIDHLRK 818


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M+ L+EM   G APD  TYN  ++  C+   V +A +  E + + G     P   +Y I+
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGG---EPNTVSYNIV 57

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L   +R E+   L+  M + GC P+V T+  ++  +C  G VE A + LE++   G 
Sbjct: 58  LKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGC 117

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+ ++YN  L   C  K  D+A+     M+  GC+P + +YN L++     GE D A +
Sbjct: 118 TPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAID 177

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             H++  +GC+  + +Y  +IDGL    K +EA  LL+E+++KGL+
Sbjct: 178 LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQ 223



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 144/283 (50%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P   + N++L  L      + AE + + + +K   PN  T+N+L             M+
Sbjct: 48  EPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAME 107

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE++ + G  P++ +YN  +  FCK + + +A    E M ++G     P   +Y  ++ 
Sbjct: 108 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGC---YPDIVSYNTLLT 164

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +N  ++    LL  +   GC P + +Y  V++G+  AGK +EA + L+EM +KG  P
Sbjct: 165 ALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQP 224

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY      LC     +EA+R + ++ ++G  P+V  YN ++    +  E   A + +
Sbjct: 225 DIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLF 284

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M   GC  +  TY ++++GL     V+EA  LL ++ ++G+
Sbjct: 285 SYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCSRGV 327



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 128/283 (45%), Gaps = 25/283 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+I   N++L+ +C+ G VD A                      M+ LE +   G  P+ 
Sbjct: 14  PDIITYNVVLNGICQEGRVDDA----------------------MEFLENLPSYGGEPNT 51

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            +YN  +     A    +A  L E M  KG     P   T+ ++I  L +   +E    +
Sbjct: 52  VSYNIVLKGLFTAERWEDAEKLMEEMAHKGC---PPNVVTFNMLISFLCRRGLVEPAMEV 108

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  +   GC P+  +Y  +L   C   K+++A  F+E M ++G  PDIV+YN  L  LC 
Sbjct: 109 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCR 168

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           N   D A+ L  ++   GC P + +YN +I    + G+   A E   EM  +G   D+ T
Sbjct: 169 NGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIIT 228

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           Y  +  GL    K+EEA     +V + G++     +++ L+ L
Sbjct: 229 YTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGL 271


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 144/307 (46%), Gaps = 23/307 (7%)

Query: 149 NKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKV 207
           N+V     VL  ILK       +  QP+      L+  LC  G +  A     K +    
Sbjct: 105 NRVGFAFSVLAKILK-------LGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 157

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +PN  TY  L             ++ L  M Q    PD   Y + ID+ CK R VTEA +
Sbjct: 158 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFN 217

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LF  M  +G    SP   TY  ++ AL      +   +LL  M+NS  LPDV  +  V++
Sbjct: 218 LFSQMVGQGI---SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 274

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            +C  GKV EA++ ++ M  +G  PD+VTY   +   C     DEA++++  M+  G  P
Sbjct: 275 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP 334

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            V +Y  LI+ Y ++ + D A   + EM ++    D  TY  ++ GL    ++++A  L 
Sbjct: 335 DVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALF 394

Query: 436 EEVVNKG 442
            E+V +G
Sbjct: 395 HEMVARG 401



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 137/290 (47%), Gaps = 16/290 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           + +  K  P++   + ++DALCK G V  A  I    ++  V+P+  TY  L        
Sbjct: 256 QMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQS 315

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M++ G APD  +Y T I+ +CK   + +A  LFE M  K      P  K
Sbjct: 316 EMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI---PDTK 372

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  ++  L    R+++  +L   M+  G +PD+ TY  +L+ +C    +EEA   L+ +
Sbjct: 373 TYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAI 432

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 PDI  YN  +  +C     + A  L+  +   G  PSV TYN++I    + G  
Sbjct: 433 EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLL 492

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + A + + EMD   C+ D  TY  +  G    ++   A  LLEE++ +G 
Sbjct: 493 NEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 542



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 82/174 (47%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +A ++ ++ +        SL   M + G  P+V T   ++   C   +V  A+  
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L ++   G+ PD  T+   ++ LC      EAL L+ +MI+ G  P+V TY  LI+   +
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +G    A      M++  C  DV  Y  +ID L    +V EA  L  ++V +G+
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGI 227



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%)

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PP IV +   L  +   K+    L L  +M   G  P+V T N+LI+ +  L     AF 
Sbjct: 53  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 112

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              ++ K G   D  T+  +I GL    K+ EA  L ++++++G +     + + +  L 
Sbjct: 113 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 172

Query: 459 VIGDLGAIHKLSDHMRK 475
            +G+  A  +L   M +
Sbjct: 173 KVGNTSAAIRLLRSMEQ 189


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 149/297 (50%), Gaps = 18/297 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL------EEMIQ 227
           P+I   N L+  LCK G VD A + + + ++    PN  TYN + + TL      EE  +
Sbjct: 334 PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTI-ISTLCKENQVEEATK 392

Query: 228 M-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           +       G  PD  TYN+ I   C +R  T A +L++ M+TKG     P   TY ++I 
Sbjct: 393 LALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGC---HPDEFTYNMLID 449

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L    +++E  +LL  M  SGC  +V TY  +++G C   ++ EA +  ++M  +G   
Sbjct: 450 SLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSR 509

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN  +  LC ++  +EA +L  +MI  G  P   TYN L++ + + G+   A +  
Sbjct: 510 NSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIV 569

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             M   GC  D+ TY  +I GL    +VE A  LL  +  KG+ L    ++  +  L
Sbjct: 570 QTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQAL 626



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 25/289 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+    N+L++ L K G V +A                      ++ ++ M++ G  PD 
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHA----------------------LEVMDMMLREGFDPDI 336

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           +TYN+ I   CK   V EA  +   M  +     SP   TY  +I  L + +++EE   L
Sbjct: 337 YTYNSLISGLCKLGEVDEAVKVLNQMIERDC---SPNTVTYNTIISTLCKENQVEEATKL 393

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              +   G LPDV TY  +++G+CL+     A +  +EM  KG  PD  TYN  +  LC 
Sbjct: 394 ALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCF 453

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                EAL L   M   GC  +V TYN LI  + +      A E + +M+ +G +++  T
Sbjct: 454 RGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           Y  +IDGL    +VEEA  L+++++ +GL+     ++S L      GD+
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDI 562



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 141/311 (45%), Gaps = 17/311 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L+  LC       A  + K +K K   P+  TYN+L             +  
Sbjct: 404 PDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNL 463

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G A +  TYNT ID FCK + + EA ++F+ M  +G + +S T   Y  +I  
Sbjct: 464 LKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT---YNTLIDG 520

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +++R+EE   L+  MI  G  PD  TY  +L   C AG +++A   ++ M + G  PD
Sbjct: 521 LCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPD 580

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTY   +  LC     + A +L   +   G   +   YN +I   F       A   + 
Sbjct: 581 IVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFR 640

Query: 402 EMDKRGCAQDVDTYCVMIDGLFD-CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM ++  A D  TY ++  GL      + EA   + E++ +G    +  F      L  +
Sbjct: 641 EMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSL 700

Query: 461 GDLGAIHKLSD 471
             +G + KL D
Sbjct: 701 AMVGTLIKLID 711



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 30/369 (8%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKV 151
           A RF      ++ +  +   +N++++ LS T +      ++  ML      D    N+ +
Sbjct: 284 ALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLI 343

Query: 152 -----FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
                   VD  + +L Q  E+      P     N ++  LCK   V+ A  +   +  K
Sbjct: 344 SGLCKLGEVDEAVKVLNQMIER---DCSPNTVTYNTIISTLCKENQVEEATKLALVLTGK 400

Query: 207 -VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            + P+  TYN L             M+  +EM   G  PD FTYN  ID+ C    + EA
Sbjct: 401 GILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
            +L + M   G    +    TY  +I    +N R+ E   +   M   G   +  TY  +
Sbjct: 461 LNLLKEMEVSGC---ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTL 517

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           ++G+C + +VEEA + +++M  +G  PD  TYN  L   C   +  +A  +   M   GC
Sbjct: 518 IDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGC 577

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P + TY  LI+   + G  + A +    +  +G       Y  +I  LF   + +EA  
Sbjct: 578 EPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVR 637

Query: 434 LLEEVVNKG 442
           L  E++ K 
Sbjct: 638 LFREMIEKA 646



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKP 209
           V V  + L ++   ++  +    +P+++  N+L+ ALC+   +  A  + + +++  + P
Sbjct: 169 VLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLP 228

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +  T+  +             M+  E+M++ G    N T N  ++ FCK   + EA    
Sbjct: 229 DEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFI 288

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           E M  +      P   T+ +++  L +   ++    ++  M+  G  PD+ TY  ++ G+
Sbjct: 289 EEMSLREGFF--PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGL 346

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C  G+V+EA K L +M  +   P+ VTYN  +  LC     +EA +L   +   G  P V
Sbjct: 347 CKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDV 406

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TYN LI           A E + EM  +GC  D  TY ++ID L    K++EA  LL+E
Sbjct: 407 CTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKE 466

Query: 438 VVNKG 442
           +   G
Sbjct: 467 MEVSG 471



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 36/203 (17%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  ++  LV  ++++       +M++ G  PDVST+  +++ +C A ++  A   +EEM 
Sbjct: 163 YNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEME 222

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC--------------------- 373
           + G  PD  T+   ++   +  N D A+R+  +M+E GC                     
Sbjct: 223 DFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIE 282

Query: 374 ---------------WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
                          +P   T+NML++   + G    A E    M + G   D+ TY  +
Sbjct: 283 EALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSL 342

Query: 419 IDGLFDCSKVEEACFLLEEVVNK 441
           I GL    +V+EA  +L +++ +
Sbjct: 343 ISGLCKLGEVDEAVKVLNQMIER 365



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI-----NSGCLPDVSTYKEVLEGMCL 319
           +T +S T  +       L+ + R EE  S + H+           P  S +KEVL  +  
Sbjct: 42  TTTNSATRLSPNFTPTQLLHSLRREEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGK 101

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQ 378
           AG+ +     L+EM       D  +   F++        +E L+    M +E G   +  
Sbjct: 102 AGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTH 161

Query: 379 TYNMLISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            YN L+++  + G      E  H  M  RG   DV T+ ++I  L    ++  A  L+EE
Sbjct: 162 FYNFLLNVLVD-GNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEE 220

Query: 438 VVNKGLKLPYRKFDSYLMQ 456
           + + GL LP  K  + +MQ
Sbjct: 221 MEDFGL-LPDEKTFTTIMQ 238


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 19/322 (5%)

Query: 170 KVKTQPEINALNLLLDALCKC----GLVDYAETICKRVKNKVKPNANTYNIL-------- 217
           +++ +P +   N LL+AL +      LV   E     VK  V+PN NT+NIL        
Sbjct: 166 RLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDN 225

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ + +M + G  PDN TYNT +   CK   +T+  DL   M+  G     P   
Sbjct: 226 NTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLF---PNRN 282

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I++    +   ++E   ++  M   G LPDV TY  ++ G+C  GK++EA +  ++M
Sbjct: 283 TYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKM 342

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    PD+VTYN  +    +++  D A +L   M   G   +  T+N++I  +   G+ 
Sbjct: 343 ESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKI 402

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A     +M + G + D  TY  MI+G     K+ EA  +++E+  KGLKL     ++ 
Sbjct: 403 DEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTL 462

Query: 454 LMQLSVIGDLGAIHKLSDHMRK 475
           L  + +   L   + L+   RK
Sbjct: 463 LHTMCLEKQLDDAYTLTMKARK 484



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 129/282 (45%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P  N  N+L+   CK   L + AE I       + P+  TYN +             ++ 
Sbjct: 279 PNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRL 338

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M      PD  TYNT ID   + R    A  L E M+ +G         T+ IMI  
Sbjct: 339 RDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV---KENGVTHNIMIKW 395

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                +++E  +++  M+ SG  PD  TY  ++ G C AGK+ EAYK ++EMG KG   D
Sbjct: 396 FCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLD 455

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T N  L  +C  K  D+A  L  +  + G      TY  LI  YF+  + D A + W 
Sbjct: 456 TFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWE 515

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM + G    + TY  +I GL    K ++A   L E++ KGL
Sbjct: 516 EMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGL 557



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 20/303 (6%)

Query: 159 LMILKQYTEKIKVKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANT 213
           L  LK+  E I++ T     P++   N ++  LC  G +D A  +  ++++ K+ P+  T
Sbjct: 294 LKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVT 353

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              + +EEM   G   +  T+N  I  FC    + EA+++   M 
Sbjct: 354 YNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMV 413

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G    SP   TY  MI    +  +M E + ++  M   G   D  T   +L  MCL  
Sbjct: 414 ESGF---SPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEK 470

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++++AY    +   +GY  D VTY   +     ++  D AL+L+  M E G   ++ TYN
Sbjct: 471 QLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYN 530

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +I      G+ D A +  +E+ ++G   D  T  ++I G      VE+A     ++V  
Sbjct: 531 TIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEH 590

Query: 442 GLK 444
            LK
Sbjct: 591 SLK 593



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 125/307 (40%), Gaps = 45/307 (14%)

Query: 181 NLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+++   C  G +D A  +  K V++   P+  TYN +              + ++EM +
Sbjct: 390 NIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGR 449

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------------------ 269
            G   D FT NT + T C  + + +A  L    R +G  +                    
Sbjct: 450 KGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADR 509

Query: 270 --------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
                          T  TY  +I  L  + + ++    L  ++  G +PD ST   ++ 
Sbjct: 510 ALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIH 569

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G C  G VE+A++F  +M      PDI T N  L+ LC     ++ L L+   I  G   
Sbjct: 570 GYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPM 629

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
              TYN++IS + +    + AF+   EM+ +    D  TY  ++ GL    + EEA  L 
Sbjct: 630 DTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLA 689

Query: 436 EEVVNKG 442
            +   KG
Sbjct: 690 LKFAEKG 696



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 128/308 (41%), Gaps = 40/308 (12%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L E+++ G  PD  T N  I  +C    V +A   F+F          P   T  I++  
Sbjct: 549 LNELLEKGLVPDESTSNIIIHGYCWEGAVEKA---FQFHNKMVEHSLKPDIFTCNILLRG 605

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   +E+  +L    I+ G   D  TY  ++   C   ++E+A+  + EM  K   PD
Sbjct: 606 LCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPD 665

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-------CWPSVQTYNML----ISMYFEL 390
             TYN  +  L      +EA +L  +  E G         P + T +M+    IS     
Sbjct: 666 RYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQ 725

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+   A + + + +++G + +  TY  ++DGL    K      LL  +V+  ++     F
Sbjct: 726 GKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQF----F 781

Query: 451 DSYLMQLSVI--------------GDLGAIHKLSDH----MRKFYN----PVIARRLALN 488
           D   M+ + I              G L  ++KLS +    +  F N    P+ A   +L+
Sbjct: 782 DRNPMRYAHILWCFGFELEIEVPEGVLRCLYKLSLYSCCLLTSFENVKSSPLFAIHFSLH 841

Query: 489 QKRVRISL 496
            +R + SL
Sbjct: 842 SQREQSSL 849



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 27/195 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+ +  N+++   C  G V+ A +   K V++ +KP+  T NIL            G+  
Sbjct: 559 PDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTL 618

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
               I  G   D  TYN  I +FCK R + +A DL   M  K      P   TY  ++  
Sbjct: 619 FNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNL---EPDRYTYNAIVTG 675

Query: 282 LVQNDRMEEC------FSLLGHMINS-GCLPDVST----YKEVLEGMCLAGKVEEAYKFL 330
           L +  R EE       F+  G  + +    P++ T    Y E +  +C  GK ++A K  
Sbjct: 676 LTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLF 735

Query: 331 EEMGNKGYPPDIVTY 345
           ++   KG   +  TY
Sbjct: 736 QQAEQKGVSLNKYTY 750



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P++ T+N  +   C + N +EALRL  +M E GC P   TYN +++   +  +    
Sbjct: 206 GVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQV 265

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            +   +M   G   + +TY +++ G      ++EA  ++E +  KG+      +++ +  
Sbjct: 266 RDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRG 325

Query: 457 LSVIGDLGAIHKLSDHMRKF 476
           L   G +    +L D M  F
Sbjct: 326 LCDEGKIDEAVRLRDKMESF 345


>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 187/416 (44%), Gaps = 32/416 (7%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMI-DILSSTKYKAKQFRLVCSMLDYMK 146
           L R + +   A + F     +      P  Y+L+  DI+ +    +K F  +  +L  +K
Sbjct: 15  LLRRENDPSAAIKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELDQVLLQLK 74

Query: 147 RNNKVFVPVDVLL--------------MILKQYTEKIKVKTQPEINALNLLLDALCKCGL 192
            + ++ VP ++L                 L  + E  + + Q  + +LN LL+ L KCG 
Sbjct: 75  TDTRI-VPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQRTVKSLNSLLNTLLKCGE 133

Query: 193 VDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
            +  +     +    KP+A TYNIL             ++  +EM++    P   T+ T 
Sbjct: 134 FEKMKERLSSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFDEMVKKKVKPTGVTFGTL 193

Query: 241 IDTFCKARMVTEAADLFE-FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
           I   CK   V EA  + +  ++  G     PT   YA ++ AL Q   +   F L     
Sbjct: 194 IHGLCKNLRVKEALKMKQDMLKVYGV---RPTVHIYASLVKALCQIGELSFAFKLKDEAY 250

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
                 D + Y  ++  +  AG+  E  + LEEM  KG  PD VTYN  +   C   + +
Sbjct: 251 EGKIKVDSAIYSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSE 310

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A R+   M+E G  P V +YNM++ + F + + + A   + +M +RGC+ D  +Y ++ 
Sbjct: 311 SAYRVLDEMVEKGLKPDVISYNMILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSYRIVF 370

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           DGL +  + EEA  +L+E++ KG K    + + +L +L   G L  + K+   M +
Sbjct: 371 DGLCEGLQFEEAAAILDEMLFKGYKPRRDRLERFLQKLCESGKLEILSKVISSMHR 426


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 202/487 (41%), Gaps = 108/487 (22%)

Query: 84  VVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS----------------S 127
           +V VL   +    +A RFF WA  Q  +    L Y +++DIL+                S
Sbjct: 50  LVRVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVS 109

Query: 128 TKYK----------------AKQFRLVCSMLDYMKRNNKVFVP----VDVLLMILKQYTE 167
            K +                AK+  L   +L + K  +K  +P     + +L +L+    
Sbjct: 110 VKMENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDS 169

Query: 168 KIKVKTQ-----------PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN 215
            I V  +           P +   N +LD+ CK G V  A + + +  K    PN  TYN
Sbjct: 170 SIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYN 229

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           +L              + ++EM+++G     +TY+  I  +C+   + EA+ L E M ++
Sbjct: 230 VLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSR 289

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G+    PT  TY  ++  L +  R+ +   LL  M+N   +PD+ +Y  ++ G    G +
Sbjct: 290 GAV---PTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNI 346

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            EA+    E+  +G  P +VTYN  +  LC   + D A+RL   MI+ G  P V T+ +L
Sbjct: 347 GEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTIL 406

Query: 384 ISMY-----------------------------------FELGEPDGAFETWHEMDKRGC 408
           +  +                                    +LG+P  AF    EM  RG 
Sbjct: 407 VRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 466

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D+ TY V IDGL     ++EA  L+++++  GL   +  + S +            H 
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHA----------HL 516

Query: 469 LSDHMRK 475
           ++ H+RK
Sbjct: 517 MAGHLRK 523



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 133/283 (46%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQT 221
           P +   N L+D LC+ G +D A  +  + +K+   P+  T+ IL              + 
Sbjct: 363 PSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKEL 422

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  PD F Y T I    K    ++A  + E M  +G     P   TY + I  
Sbjct: 423 FDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF---PPDLITYNVFIDG 479

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   ++E   L+  M+ +G +PD  TY  ++    +AG + +A     EM +KG  P 
Sbjct: 480 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPS 539

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +           A+  +  M E G  P+V TYN LI+   ++ + D A++ + 
Sbjct: 540 VVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFT 599

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM  +G + +  TY ++I+   +    +EA  L ++++++ ++
Sbjct: 600 EMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQ 642



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 20/271 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY----------- 214
           E IK    P++    +L+   CK G +  A+ +   + N+ ++P+   Y           
Sbjct: 390 EMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLG 449

Query: 215 ---NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GMQ  EEM+  G  PD  TYN  ID   K   + EA++L + M   G     P 
Sbjct: 450 DPSKAFGMQ--EEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV---PD 504

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I A +    + +  ++   M++ G  P V TY  ++    + G+++ A     
Sbjct: 505 HVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFF 564

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  KG  P+++TYN  +  LC  +  D+A + +  M   G  P+  TY +LI+    LG
Sbjct: 565 EMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLG 624

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               A   + +M  R    D  T+  ++  L
Sbjct: 625 HWQEALRLYKDMLDREIQPDSCTHSALLKHL 655



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 124/320 (38%), Gaps = 57/320 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N ++  LCK G V  A  +   + NK + P+  +YN L                
Sbjct: 293 PTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 352

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---PTAKTYAIM 278
             E+   G  P   TYNT ID  C+        DL   MR K   I     P   T+ I+
Sbjct: 353 FAELRFRGLVPSVVTYNTLIDGLCRM------GDLDVAMRLKDEMIKHGPDPDVFTFTIL 406

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +    +   +     L   M+N G  PD   Y   + G    G   +A+   EEM  +G+
Sbjct: 407 VRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 466

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRL---------------------------------- 364
           PPD++TYN F+  L    N  EA  L                                  
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 526

Query: 365 -YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
            +  M+  G +PSV TY +LI  Y   G    A   + EM ++G   +V TY  +I+GL 
Sbjct: 527 VFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLC 586

Query: 424 DCSKVEEACFLLEEVVNKGL 443
              K+++A     E+  KG+
Sbjct: 587 KVRKMDQAYKFFTEMQAKGI 606


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 44/377 (11%)

Query: 96  KIAFRFFMWAGHQDN-YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
           K A  FF+WA  +   Y+H P A + M+D+L  T+   + + L+  M      + +  V 
Sbjct: 99  KPALGFFLWAQSRGGGYSHTPYACSRMVDLLGKTRQIDRMWDLLSEM------HCRGLVT 152

Query: 155 VDVL------LMILKQYTEKIKVKTQPE-------INALNLLLDALCKCGLVDYAETICK 201
           VD +      L   +++ + I +  Q E          +N+LLDALCK   V+ A  +  
Sbjct: 153 VDTVAKSIRRLAAARKWRDAILLFDQLEDLGLERNTETMNVLLDALCKEKKVELAREVFV 212

Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
            +   + P+A T+NI              + T+EEM   G  P   TY   ++ +CK R 
Sbjct: 213 MLSPHIAPDAYTFNIFVHGWCSVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRN 272

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                 ++E + + GS    P   TY +++ +L + +R EE  S+   M +SGC PD   
Sbjct: 273 FRR---VYEVLDSMGSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLF 329

Query: 310 YKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           Y  ++  +  AG + EA + F  EM   G   ++ TYN  + +LC     D+AL +   M
Sbjct: 330 YNALINLLGRAGHLFEANQVFRVEMPRNGVLRNVATYNTMISILCQYGRDDDALGVLKEM 389

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-----DKRGCAQDVDTYCVMIDGLF 423
               C P +QTY  L+ +         A    H +     D+ G   D+DTY ++I GL 
Sbjct: 390 EAQSCKPDLQTYQPLLRLLLGRRGQAAAV---HRLLSELRDRNGLGLDLDTYTLLIHGLC 446

Query: 424 DCSKVEEACFLLEEVVN 440
              + + A  L +E+V 
Sbjct: 447 KVGETDWAYLLYDEMVG 463



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 5/216 (2%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G++   +  +  +D   K R +    DL   M  +G      T  T A  I  L    + 
Sbjct: 114 GYSHTPYACSRMVDLLGKTRQIDRMWDLLSEMHCRGLV----TVDTVAKSIRRLAAARKW 169

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            +   L   + + G   +  T   +L+ +C   KVE A +    M +    PD  T+N F
Sbjct: 170 RDAILLFDQLEDLGLERNTETMNVLLDALCKEKKVELAREVFV-MLSPHIAPDAYTFNIF 228

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C  +  DEAL     M   G  P V TY  ++  Y +       +E    M  +GC
Sbjct: 229 VHGWCSVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGC 288

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +V TY +++  L  C + EEA  + + + + G K
Sbjct: 289 HPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCK 324


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 175/393 (44%), Gaps = 47/393 (11%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           + EKAL+ L + +    V  +L+    E  +  +FF WAG + N+ H+   Y  +I  L 
Sbjct: 79  DAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKWAGKRRNFQHDCSTYMALIRCLE 137

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFV-PVDVLLMILKQYTEKIKVKTQPEINALNLLLD 185
             +   + +R +  ++    RN  V V PV                        L+ L+ 
Sbjct: 138 EARLYGEMYRTIQEVV----RNTYVSVGPV-----------------------VLSELVK 170

Query: 186 ALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMGHA- 231
           AL +  +V  A ++  + K  K KP ++TYN + +  ++E            M   G   
Sbjct: 171 ALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCF 230

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  TY+  I ++ K      A  LF+ M+        PT K Y  ++    +  ++E+ 
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMK---DNCMQPTEKIYTTLLGIYFKVGKVEKA 287

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             L   M  +GC P V TY E+++G+  AG+VEEAY   + M   G  PD+V  N  + +
Sbjct: 288 LDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNI 347

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRGCAQ 410
           L      +E   ++  M    C P+V +YN +I   FE   P     +W + M   G + 
Sbjct: 348 LGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSP 407

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 408 SEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF 440



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 17/262 (6%)

Query: 175 PEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           P + + N ++ AL   K  + + +    K   + V P+  TY+IL             + 
Sbjct: 371 PTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALL 430

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LEEM + G  P    Y + I+   KA+    A +LF+ ++     +SS   + YA+MI 
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSS---RVYAVMIK 487

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++ E   L   M N G  PDV  Y  ++ GM  AG V EA   L +M   G   
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTA 547

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI ++N  L           A+ ++  M   G  P   TYN L+  +   G  + A    
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLM 607

Query: 401 HEMDKRGCAQDVDTYCVMIDGL 422
            EM  +G   D  TY  ++D +
Sbjct: 608 REMKDKGFEYDAITYSSILDAV 629



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 121/294 (41%), Gaps = 17/294 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLE---------- 223
           P++  LN L++ L K G ++    +   +   +  P   +YN +     E          
Sbjct: 336 PDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSS 395

Query: 224 ---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M   G +P  FTY+  ID +CK   V +A  L E M  KG     P    Y  +I 
Sbjct: 396 WFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF---PPCPAAYCSLIN 452

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +  R E    L   +  +        Y  +++     GK+ EA     EM N+G  P
Sbjct: 453 ALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGP 512

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+  YN  +  +      +EA  L  +M E GC   + ++N++++ +   G P  A E +
Sbjct: 513 DVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMF 572

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
             M   G   D  TY  ++         EEA  L+ E+ +KG +     + S L
Sbjct: 573 ETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSIL 626


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 136/282 (48%), Gaps = 22/282 (7%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------ 217
           +  +P   + ++++D LCKCG  D A  + K +K   V P+  +Y  L            
Sbjct: 477 INCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKD 536

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
                 EM+ +G  PD  T++  ID  CK   V EA +L E M  +G     P   TY  
Sbjct: 537 AKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI---PNTVTYTT 593

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY----KFLEEM 333
           ++  L  NDR+ E   L   M   GCLPDV TY  +++G+C  G ++ A     K L + 
Sbjct: 594 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDT 653

Query: 334 GNKG--YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           G  G  + PD+++Y+  +  LC +   DEA  L+  M  +G  P+V +Y  LI  +   G
Sbjct: 654 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 713

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
           + + A   ++EM  +G   +  TY VMI G     ++++A F
Sbjct: 714 KLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKALF 755



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 127/273 (46%), Gaps = 31/273 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E + V  QP++   ++L+D LCK G V  A        NK+              LE 
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEA--------NKL--------------LEV 397

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           +IQ G  PD  T  T +   C    +++A  LF  M+  G     P   T A ++  L Q
Sbjct: 398 VIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCM---PNVVTCATLMKGLCQ 454

Query: 285 NDRMEECFSLLGHMINS------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  ++    L  +M++        C P+  +Y  +++G+C  G+ +EA +  +EM   G 
Sbjct: 455 SGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGV 514

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+++Y   +   C +    +A  L+  M+++G  P V T+++LI M  + G+   A E
Sbjct: 515 IPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANE 574

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
               M +RGC  +  TY  ++ GL    ++ EA
Sbjct: 575 LLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 607



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 119/260 (45%), Gaps = 15/260 (5%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+ +G  PD  T    ID FCK   V EA +L E M  +G  +      TY+ +I  L  
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILD---IVTYSTLIKGLCM 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY------ 338
             R+ E   L   M   GC PD   Y  +++G+C  GK+  A    +EM N         
Sbjct: 58  KHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKC 117

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P +V+Y+  +  LC ++  DEA  L+  M   G  P V +Y  LI  +   G+ + A  
Sbjct: 118 KPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKC 177

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            ++EM   G   DV T  ++ID L    KV EA  LLE ++ +G  L    +       +
Sbjct: 178 LFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYS------T 231

Query: 459 VIGDLGAIHKLSDHMRKFYN 478
           +I  L   H++S+  R F +
Sbjct: 232 LIKGLCMKHRISEATRLFMS 251



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 134/311 (43%), Gaps = 31/311 (9%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
           + V  QP++    +L+D  CK G V  A                       + LE M+Q 
Sbjct: 2   LHVGIQPDVTTSGVLIDMFCKEGKVIEAN----------------------ELLEVMVQR 39

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G   D  TY+T I   C    ++EA  LF  M+  G     P A  Y  ++  L Q  ++
Sbjct: 40  GCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGC---RPDAIAYGTLMKGLCQTGKI 96

Query: 289 EECFSLLGHMINSG------CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
                L   M+N        C P + +Y  +++G+C   + +EA +  +EM  +G  PD+
Sbjct: 97  NIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDV 156

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           ++Y   +   C +   ++A  L+  M++VG    V T +MLI +  + G+   A E    
Sbjct: 157 ISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEV 216

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M +RGC  D+ TY  +I GL    ++ EA  L   +   G +     + + +  L   G+
Sbjct: 217 MIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGN 276

Query: 463 LGAIHKLSDHM 473
           +    +L   M
Sbjct: 277 INTALQLHQEM 287



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 129/280 (46%), Gaps = 25/280 (8%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K+   P +     L+  LC+ G +  A  + K + +   P    Y I             
Sbjct: 435 KLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP----YGI------------N 478

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  +Y+  ID  CK     EA +LF+ M+  G     P   +Y  +I    ++ + +
Sbjct: 479 CKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI---PDVISYTSLIHGFCRSGKWK 535

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L   M++ G  PDV+T+  +++ +C  GKV EA + LE M  +G  P+ VTY   +
Sbjct: 536 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLV 595

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----DK 405
           K LC N    EA +L+ +M ++GC P V TY  L+    + G    A E   +M     +
Sbjct: 596 KGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 655

Query: 406 RGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G     DV +Y ++IDGL    + +EA  L +E+   G+
Sbjct: 656 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 695



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 25/280 (8%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K+  +P+  A   L+  LC+ G ++ A  + + + N    + + Y I    TL       
Sbjct: 73  KLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLN----DTSQYGIKCKPTL------- 121

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
                 +Y+  ID  CK R   EA +LF+ M+ +G     P   +Y  +I    ++ + E
Sbjct: 122 -----VSYSIIIDGLCKDRREDEARELFKEMKAQGMM---PDVISYTSLIHGFCRSGKWE 173

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L   M++ G   DV+T   +++ +C  GKV EA + LE M  +G   DIVTY+  +
Sbjct: 174 KAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLI 233

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----DK 405
           K LC      EA RL+  M ++GC P    Y  L+    + G  + A +   EM     +
Sbjct: 234 KGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGR 293

Query: 406 RG--CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G  C   + +Y ++IDGL    + +EA  L +E+  +G+
Sbjct: 294 YGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGI 333



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 31/264 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E + V  + ++   ++L+D LCK G V  A                       + LE 
Sbjct: 179 FNEMLDVGIRSDVTTSSMLIDILCKEGKVIEAN----------------------ELLEV 216

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MIQ G   D  TY+T I   C    ++EA  LF  M+  G     P A  Y  ++  L Q
Sbjct: 217 MIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGC---RPDAIAYGTLMKGLCQ 273

Query: 285 NDRMEECFSLLGHMINSG------CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
              +     L   M+N        C P + +Y  +++G+C   + +EA +  +EM  +G 
Sbjct: 274 TGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGI 333

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+++Y   +   C +   ++A  L+  M++VG  P V T ++LI M  + G+   A +
Sbjct: 334 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 393

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGL 422
               + +RGC  DV T   ++ GL
Sbjct: 394 LLEVVIQRGCIPDVVTCTTLVKGL 417


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 149/337 (44%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E ++V   P +   N L+  LC+ GL +   E + +  ++   P+   Y  +        
Sbjct: 238 EMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDG 297

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   L  M   G  P+   YNT +   C A    EA DL   M  +   +      
Sbjct: 298 HHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDD---V 354

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M+  GC+PDV TY  V+ G C  G V+EA   L+ M
Sbjct: 355 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 414

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P+ ++Y   LK LC  +   +A  L   MI+ GC P+  T+N LI+   + G  
Sbjct: 415 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLV 474

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K EEA  LL  ++NKG+      + S 
Sbjct: 475 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 534

Query: 454 LMQLSVIGDLGAIHKLSDHMR--------KFYNPVIA 482
              LS  G    I ++ D ++          YN VI+
Sbjct: 535 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVIS 571



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 130/297 (43%), Gaps = 60/297 (20%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            N+L+D  C+ GLVD       RV               ++ LE+M++ G  PD  TY T
Sbjct: 356 FNILVDFFCQNGLVD-------RV---------------IELLEQMLEHGCIPDVITYTT 393

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I+ FCK  +V EA  L + M   G     P   +Y I++  L + +R  +   L+ HMI
Sbjct: 394 VINGFCKEGLVDEAVMLLKNMSACGC---KPNTISYTIVLKGLCRAERWVDAQELISHMI 450

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GCLP+  T+  ++  MC  G VE+A + L++M   G  PD+++Y+  +  L      +
Sbjct: 451 QQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 510

Query: 360 EALRLYGRMIEVGCWP--------------------------SVQT---------YNMLI 384
           EAL L   MI  G  P                          S+Q          YN +I
Sbjct: 511 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 570

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           S   +  E D A + +  M   GC  +  TY ++I GL     V EA  LL E+ ++
Sbjct: 571 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 627



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 3/213 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ +TY   + + C   ++ +A  + + M  +G   + P      +++ A  +       
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCH---VILEAACRGGGFRSA 162

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
              L  +   GC  D      V+  +C  G V+E  + L ++ + G  PDIV+YN  LK 
Sbjct: 163 VRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKG 222

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC  K  D+   L   M+ VGC P+V T+N LI+     G  +   E   +M + GC  D
Sbjct: 223 LCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPD 282

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +  Y  +IDG+      E A  +L  + + GLK
Sbjct: 283 LRMYATIIDGICKDGHHEVANDILSRMPSYGLK 315



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 17/285 (5%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
           A N ++   C+ G V  A  +   V   V PNA TY  +             +  L+EM 
Sbjct: 78  AYNAMIAGYCRAGQVAAARRLAAAVP--VPPNAYTYFPIVRSLCARGLIADALTVLDEMP 135

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G A      +  ++  C+      A    + +  KG T+ S       +++ A+ +  
Sbjct: 136 LRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCN---LVVSAICEQG 192

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            ++E   LL  + + GC PD+ +Y  VL+G+C+A + ++  + + EM   G PP++ T+N
Sbjct: 193 CVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFN 252

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC N   ++      +M E GC P ++ Y  +I    + G  + A +    M   
Sbjct: 253 TLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSY 312

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           G   +V  Y  ++ GL    + EEA  LL E+  +   L    F+
Sbjct: 313 GLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFN 357



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 107/266 (40%), Gaps = 42/266 (15%)

Query: 218 GMQTLEEMIQMGHAP----DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
           G ++    +Q+ HA     D+   N  +   C+   V E  +L   + + G     P   
Sbjct: 158 GFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGC---EPDIV 214

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST------------------------ 309
           +Y  ++  L    R ++   L+  M+  GC P+V+T                        
Sbjct: 215 SYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQM 274

Query: 310 -----------YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
                      Y  +++G+C  G  E A   L  M + G  P++V YN  LK LC  +  
Sbjct: 275 PEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERW 334

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           +EA  L   M +  C     T+N+L+  + + G  D   E   +M + GC  DV TY  +
Sbjct: 335 EEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTV 394

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLK 444
           I+G      V+EA  LL+ +   G K
Sbjct: 395 INGFCKEGLVDEAVMLLKNMSACGCK 420



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 68/169 (40%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P+  TY  ++  +C  G + +A   L+EM  +G        +  L+  C       A+R 
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              +   GC       N+++S   E G  D   E   ++   GC  D+ +Y  ++ GL  
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             + ++   L+ E+V  G       F++ +  L   G    +H+    M
Sbjct: 226 AKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQM 274


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 159/333 (47%), Gaps = 31/333 (9%)

Query: 135 FRLVCSMLDY--MKRNNKVFVPVDVLLMILKQ----------YTEKIKVKTQPEINALNL 182
           F LV + LD   ++ N +V+   + LL +L +          YTE      +P++   N 
Sbjct: 145 FDLVSNQLDMFGVQANTEVY---NHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNT 201

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMG 229
           ++DALC+      A  + + + +  V P+  T+  L    +EE            M +MG
Sbjct: 202 VIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMG 261

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +P + T N  I+ +CK   +    D   +++ + +    P   T++  +  L QN  ++
Sbjct: 262 CSPTSVTVNVLINGYCK---LGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVD 318

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +LG M+  GC PDV TY  V+  +C  G++EEA   + +M + G  PD  T+N  +
Sbjct: 319 HALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLI 378

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC     +EAL L   +   G  P+V T+N+LI+   ++G+P  A   + EM   GC 
Sbjct: 379 VALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCT 438

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            D  TY ++ID L    K+ +A  LL+E+   G
Sbjct: 439 PDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG 471



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 3/252 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G  PD  T+NT ID  C+AR    A  + E M    S   +P   T+  ++   V
Sbjct: 186 EMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEM---SSCDVAPDETTFTTLMEGFV 242

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +E    L   M   GC P   T   ++ G C  G+V +A  ++++    G+ PD V
Sbjct: 243 EEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRV 302

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           T++ F+  LC N + D AL++ G M++ GC P V TY+ +I+     GE + A    ++M
Sbjct: 303 TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQM 362

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              GC  D  T+  +I  L   +++EEA  L  E+  KGL      F+  +  L  +GD 
Sbjct: 363 VDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDP 422

Query: 464 GAIHKLSDHMRK 475
               +L + M+ 
Sbjct: 423 HLAVRLFEEMKS 434



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 144/297 (48%), Gaps = 16/297 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGM-----QTLEEMIQ 227
           +P++   + +++ LC  G ++ A+ I  + V +   P+  T+N L +       LEE + 
Sbjct: 333 EPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALD 392

Query: 228 M-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           +       G +P+ +T+N  I+  CK      A  LFE M++ G T   P   TY I+I 
Sbjct: 393 LARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCT---PDEVTYNILID 449

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + ++ +   LL  M  SGC     TY  +++G+C   ++EEA +  ++M   G   
Sbjct: 450 NLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGR 509

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + +T+N  +  LC+ +  D+A  L  +MI  G  P+  TYN +++ Y + G    A +  
Sbjct: 510 NAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADIL 569

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             M   G   DV TY  +I+GL    + + A  LL  +  KG+K   + ++  +  L
Sbjct: 570 QTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSL 626



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 20/304 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N+L++ALCK G    A  + + +K+    P+  TYNIL             +  
Sbjct: 404 PNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDL 463

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G      TYNT ID  CK R + EA ++F+ M   G       A T+  +I  
Sbjct: 464 LKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGI---GRNAITFNTLIDG 520

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L   +R+++   L+  MI+ G  P+  TY  +L   C  G + +A   L+ M   G+  D
Sbjct: 521 LCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVD 580

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC  +    AL+L   M   G  P+ + YN +I   F       A   + 
Sbjct: 581 VVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFR 640

Query: 402 EMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           EM + G   D  TY ++  GL      ++EA   L E+ + G  +P  +F S+ M    +
Sbjct: 641 EMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGF-IP--EFSSFRMLAEGL 697

Query: 461 GDLG 464
            +LG
Sbjct: 698 LNLG 701



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 125/315 (39%), Gaps = 66/315 (20%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSM-LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
           + YN++ID L S+   AK   L+  M +    ++   +  +   L   ++  E  +V  Q
Sbjct: 442 VTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQ 501

Query: 175 PEINAL-------NLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL--------- 217
            ++  +       N L+D LC    +D  AE + + +   ++PN  TYN +         
Sbjct: 502 MDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGN 561

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  L+ M   G   D  TY T I+  CKAR    A  L   MR KG     PT K 
Sbjct: 562 ISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGM---KPTPKA 618

Query: 275 YAIMIVALVQNDR------------------------------------MEECFSLLGHM 298
           Y  +I +L + +                                     ++E F  L  M
Sbjct: 619 YNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEM 678

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG--YPPDIVTYNCFLKVLCDNK 356
            ++G +P+ S+++ + EG+   G  +   + +E +  K      DI     +L++    +
Sbjct: 679 ADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELIVEKANFRESDISAIRGYLRI----R 734

Query: 357 NGDEALRLYGRMIEV 371
              +A+  +GR++EV
Sbjct: 735 KYYDAIATFGRLLEV 749


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 26/330 (7%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTL 222
           ++    +++D+ CK GL++ A      ++     PN  TY  L              +  
Sbjct: 476 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 535

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE-------------FMRTKGSTISS 269
           E M+  G  P+  TY+  ID  CKA  V +A  +FE             + +        
Sbjct: 536 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 595

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  ++    ++ R+EE   LL  M   GC P+   Y  +++G+C  GK++EA + 
Sbjct: 596 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 655

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM   G+P  + TY+  +      K  D A ++  +M+E  C P+V  Y  +I    +
Sbjct: 656 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 715

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G+ D A++    M+++GC  +V TY  MIDG     K+E    LLE + +KG+   Y  
Sbjct: 716 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 775

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           +   +      G L   H L + M++ + P
Sbjct: 776 YRVLIDHCCKNGALDVAHNLLEEMKQTHWP 805



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 26/262 (9%)

Query: 200 CKRVKNKVK-----PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKRV N +      P+   +N L              + L++M++ GH P    YN  I 
Sbjct: 315 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIG 374

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C  +      ++  A   +  M   G  ++     ++      L    + E+ FS++ 
Sbjct: 375 SICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFT---RCLCSAGKYEKAFSVIR 431

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            MI  G +PD STY +VL  +C A K+E A+   EEM   G   D+ TY   +   C   
Sbjct: 432 EMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 491

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A + +  M EVGC P+V TY  LI  Y +  +   A E +  M   GC  ++ TY 
Sbjct: 492 LIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 551

Query: 417 VMIDGLFDCSKVEEACFLLEEV 438
            +IDG     +VE+AC + E +
Sbjct: 552 ALIDGHCKAGQVEKACQIFERM 573



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 178/459 (38%), Gaps = 66/459 (14%)

Query: 45  SDSVSDVAKLYEAIIDNSNAYDNM----------EKALDSLGVPLTTDSVVGV------- 87
           S  V D+ K Y  + D+   Y N+          + ++D+  +    D+V GV       
Sbjct: 21  SREVVDLTKEYSFLHDSLVDYGNVNVHQVVPIITQSSIDARAI---ADAVTGVDDVFGRK 77

Query: 88  LQRF--QFEEKIA-----------------FRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
            Q+F  QF EK++                   FF+WAG Q  Y H    YN ++D++   
Sbjct: 78  SQKFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRD 137

Query: 129 KYKAKQFRLVCSMLDYMKRNNKVFVPVDV--------LLMILKQYTEKIKVKTQPEINAL 180
             +      +  + D  K     F+ V V          + L++       + +P  +  
Sbjct: 138 DDEKVPEEFLQQIRDDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTY 197

Query: 181 NLLLDALCKCGLVDYAETICKRVK------NKVKPNANTYNILGMQTLEEMIQM----GH 230
           N L+ A  K   +D A  I + +       +        Y++  +    E + +      
Sbjct: 198 NCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENF 257

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            PD   Y   I   C+A +  EA D    MR   +T   P   TY+ ++   +   ++  
Sbjct: 258 VPDTVFYTKLISGLCEASLFEEAMDFLNRMR---ATSCLPNVVTYSTLLCGCLNKKQLGR 314

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
           C  +L  M+  GC P    +  ++   C +G    AYK L++M   G+ P  V YN  + 
Sbjct: 315 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIG 374

Query: 351 VLCDNKNG------DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
            +C +K+       D A + Y  M+  G   +    +         G+ + AF    EM 
Sbjct: 375 SICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 434

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +G   D  TY  +++ L + SK+E A  L EE+   GL
Sbjct: 435 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 473



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 51/311 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNIL------------GMQ 220
           +P     + L+D LCK G +D A+ +   +     P    TY+ L              +
Sbjct: 630 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 689

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   ID  CK     EA  L + M  KG     P   TY  MI 
Sbjct: 690 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGC---QPNVVTYTAMID 746

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 ++E C  LL  M + G  P+  TY+ +++  C  G ++ A+  LEEM    +P 
Sbjct: 747 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 806

Query: 341 DIVTYN--------------------------CFLKV---LCDNKNGDEALRLYGRMI-E 370
               Y                            FL V   L DN    + L +  R++ E
Sbjct: 807 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 866

Query: 371 VGCWPSV-----QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           V  + +       TYN LI       + + AF+ + EM K+G   ++ ++C +I GLF  
Sbjct: 867 VATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 926

Query: 426 SKVEEACFLLE 436
           SK+ EA  LL+
Sbjct: 927 SKISEALLLLD 937



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 135/340 (39%), Gaps = 38/340 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------------- 217
           P     N L+ A C  G   YA  + K+ VK    P    YNIL                
Sbjct: 329 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLL 388

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +   EM+  G   +    ++     C A    +A  +   M  +G     P   TY
Sbjct: 389 DLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI---PDTSTY 445

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + ++  L    +ME  F L   M   G + DV TY  +++  C AG +E+A K+  EM  
Sbjct: 446 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 505

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P++VTY   +      K    A  L+  M+  GC P++ TY+ LI  + + G+ + 
Sbjct: 506 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 565

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DG     +VEEA  LL+ + 
Sbjct: 566 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 625

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +G +     +D+ +  L  +G L    ++   M +   P
Sbjct: 626 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 665


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 153/340 (45%), Gaps = 31/340 (9%)

Query: 162 LKQYTEKIKVKTQPEINAL-------NLLLDALCKC-----GLVDYAETICKRVKNKVKP 209
           +K Y++   +  Q  ++ L       N+LL+ LC       G   +A  +    +    P
Sbjct: 82  IKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGIL----RRGYSP 137

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           N  TYN L              +    M ++G  PD  TY T I   C    +  A  L 
Sbjct: 138 NIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLH 197

Query: 258 EFMRTKGSTIS---SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           + M    S       P   TY I++  L +  R +E   L   M   G +P + +Y  ++
Sbjct: 198 QEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLI 257

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G C AGK EE+ + L+EM ++G  PD+VT+N  +  LC      EA +L G MIE G  
Sbjct: 258 HGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIV 317

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P + TYN LI  +  +G+ + A E +  M  +GC  DV +Y V+I+G     KVEEA  L
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             E++  G +     +DS L  + + G +    KL   M+
Sbjct: 378 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMK 417



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 145/313 (46%), Gaps = 22/313 (7%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-------KPNANTYNIL----- 217
           K+   P++     L+  LC  G ++ A  + + + N +       KPN  TYNI+     
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                    Q  EEM   G  P   +YN+ I  FC A    E+  L + M  +G     P
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGL---QP 283

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              T+ ++I  L +  ++ E   LLG MI SG +PD+ TY  ++EG C+ G +  A +  
Sbjct: 284 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELF 343

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             M +KG  PD+++YN  +         +EA++LY  M+ VG  P+V TY+ L+   F  
Sbjct: 344 VSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLA 403

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+ D A + +  M   G A++  TY + +DGL     + EA  L  E+ +   KL     
Sbjct: 404 GKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENL 463

Query: 451 DSYLMQLSVIGDL 463
           +  +  L   G L
Sbjct: 464 NCLIDGLCKAGKL 476



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 136/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L++  C  G ++ A  +   + +K  +P+  +YN+L             M+ 
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+ +G  P+  TY++ +     A  V +A  LF  M+  G    +  + TY I +  
Sbjct: 378 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI---AENSYTYGIFLDG 434

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +ND + E   L   + +S    ++     +++G+C AGK+E A++  E++ N+G+ P+
Sbjct: 435 LCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPN 494

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +   C     D+A  L  +M   GC P + TYN L+  ++E  + +   +  H
Sbjct: 495 VVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLH 554

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-VNKGL 443
            M ++  + D  T  +++D L    K +E   LL    + KG+
Sbjct: 555 RMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGV 597



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 235 FTYNTAIDT----------FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           FT+++AI +           CK   VT A     F      +  +P+  ++  ++  L +
Sbjct: 23  FTHSSAIPSPNPQIAFFLRHCKTGNVT-ATHALHFFHLMMRSTPTPSLSSFNHLLSGLAK 81

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
                + FSL   M  SG   D  T   +L  +C   ++ E +     +  +GY P+IVT
Sbjct: 82  IKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVT 141

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +K LC      EA RL+ RM ++GC P V TY  LI      G  + A +   EM 
Sbjct: 142 YNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEML 201

Query: 405 KR------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
                    C  +V TY +++DGL    + +EA  L EE+  +G+      ++S +    
Sbjct: 202 NDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFC 261

Query: 459 VIGDLGAIHKLSDHM 473
             G      +L D M
Sbjct: 262 CAGKWEESKRLLDEM 276



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 25/175 (14%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
           D L   +K +TE      + EI  LN L+D LCK G ++ A  + +++ N+         
Sbjct: 439 DCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE--------- 489

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                        GH P+  TY   I  FC+   V +A  L + M   G T   P   TY
Sbjct: 490 -------------GHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT---PDIITY 533

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
             ++    +++++EE   LL  M      PD  T   V++ +    K +E    L
Sbjct: 534 NTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 588


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 166/357 (46%), Gaps = 26/357 (7%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNNKVFVPVDVLLMILKQYTEK 168
            YA   LAYN ++  LS     + + RL+ SML D +  N   +  +   L    Q  E 
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSAR-RLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 169 IKV--------KTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-- 217
           + V           P +   N L+ A C+ G VD AE +   ++   V+P+  T+N +  
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       +  +EM + G  PD  +YNT +  +CKA  + EA  +F  M  KG   
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVV- 292

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  +I A+ +   +E   +L+G M   G   +  T+  +++G C  G +++A 
Sbjct: 293 --PDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDAL 350

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             ++EM      P +V YN  +   C     DEA  L   M   G  P V TY+ ++S Y
Sbjct: 351 LAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGY 410

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            ++G+ D AFE   +M K+G   D  TY  +I GL +  ++ +AC L E+++  GL+
Sbjct: 411 CKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQ 467



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 133/307 (43%), Gaps = 45/307 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P +   N +++ LCK G ++ A  +   + +  + P+  +YN L             + 
Sbjct: 222 RPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALA 281

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
              EM Q G  PD  T+ + I   C+A  +  A  L   MR +G  ++            
Sbjct: 282 VFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFC 341

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P+   Y ++I    +  RM+E   L+  M   G  PDV 
Sbjct: 342 RNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVV 401

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  +L G C  G  + A++   +M  KG  PD +TY+  ++ LC+ +   +A  L+ +M
Sbjct: 402 TYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKM 461

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +++G  P   TY  LI  + + G    A     EM K+G   DV TY V+IDGL   ++ 
Sbjct: 462 LQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSART 521

Query: 429 EEACFLL 435
           +EA  LL
Sbjct: 522 KEAQRLL 528



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 140/314 (44%), Gaps = 34/314 (10%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D  L+ +K+  E    + QP +   N+L++  CK G +D A  +   ++ K +KP+  T
Sbjct: 346 LDDALLAMKEMRE---CRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVT 402

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ +              +   +M++ G  PD  TY++ I   C+ R + +A +LFE M 
Sbjct: 403 YSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKML 462

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P   TY  +I    +   +++  SL   MI  G LPDV TY  +++G+  + 
Sbjct: 463 QLGL---QPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSA 519

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYN---------------CFLKVLCDNKNGDEALRLYG 366
           + +EA + L ++  +   PD + Y                  LK        ++A ++Y 
Sbjct: 520 RTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQ 579

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M++         Y++LI  +   G    A     ++ + G + +  +   ++ GLF+  
Sbjct: 580 SMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEG 639

Query: 427 KVEEACFLLEEVVN 440
              EA  +++E++N
Sbjct: 640 MTVEADNVIQELLN 653



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           GY P ++ YN  L  L D  +   A RL   M+  G  P+V TYN+L+      G+ + A
Sbjct: 115 GYAPSLLAYNAVLLALSD-ASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 397 FE-TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
                 +M   GCA +V TY  ++       +V+ A  L+  +   G++     F++ + 
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
            L   G +    K+ D M +
Sbjct: 234 GLCKAGRMEDARKMFDEMAR 253


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------- 217
           T    +  +P   + ++++D LCKCG  D A  + K +K   V P+  +Y  L       
Sbjct: 628 TSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRS 687

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                      EM+ +G  PD  T++  ID  CK   V EA +L E M  +G     P  
Sbjct: 688 GKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI---PNT 744

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY----K 328
            TY  ++  L  NDR+ E   L   M   GCLPDV TY  +++G+C  G ++ A     K
Sbjct: 745 VTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 804

Query: 329 FLEEMGNKG--YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            L + G  G  + PD+++Y+  +  LC +   DEA  L+  M  +G  P+V +Y  LI  
Sbjct: 805 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHG 864

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
           +   G+ + A   ++EM  +G   +  TY VMI G     ++++A F
Sbjct: 865 FCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKALF 911



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 31/264 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P++   ++L+D LCK G V  A                       + LE MIQ G   D
Sbjct: 51  RPDVTTSSMLIDILCKEGKVIEAN----------------------ELLEVMIQRGCILD 88

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TY+T I   C    ++EA  LF  M+  G     P A TY  ++  L Q   +     
Sbjct: 89  IVTYSTLIKGLCMEHRISEATWLFMSMQKLGC---RPDAITYGTLMKGLCQTGNINIALQ 145

Query: 294 LLGHMINSG------CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           L   M+N        C P + +Y  +++G+C   + +EA +  +EM  +G  PD+++Y  
Sbjct: 146 LHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTS 205

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C +   ++A  L+  M++VG  P V T  +LI M+ + G+   A E    M  RG
Sbjct: 206 LIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRG 265

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEA 431
           C  D+ TY  +I GL    ++ EA
Sbjct: 266 CILDIVTYSTLIKGLCMKHRISEA 289



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 23/303 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           + E + V  QP++    +L+D  CK G +++  E +   V      +  TY+ L      
Sbjct: 223 FNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCM 282

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS--- 268
                   Q    M ++G  PD   Y T +   C+   +  A  L + M    S      
Sbjct: 283 KHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKC 342

Query: 269 -SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T +++I  L +  ++ E   LL  MI  GC+ D+ TY  +++G+C+  ++ EA 
Sbjct: 343 IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 402

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE------VGCWPSVQTYN 381
                M   G  PD +TY   +K LC   N + AL+L+  M+       + C P++ +Y+
Sbjct: 403 WLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 462

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           ++I    +    D A E + EM  +G   DV +Y  +I G     K E+A  L  E+++ 
Sbjct: 463 IIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 522

Query: 442 GLK 444
           G++
Sbjct: 523 GIQ 525



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 143/330 (43%), Gaps = 29/330 (8%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-------KVKPNANTYNIL----- 217
           K+  +P+      L+  LC+ G ++ A  + + + N       K KP   +Y+I+     
Sbjct: 117 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLC 176

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                    +  +EM   G  PD  +Y + I  FC +    +A  LF  M   G     P
Sbjct: 177 KDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGI---QP 233

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              T  ++I    +  ++ E   LL  M++ GC+ D+ TY  +++G+C+  ++ EA +  
Sbjct: 234 DVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLF 293

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE------VGCW-PSVQTYNML 383
             M   G  PD + Y   +K LC     + AL L+  M+       + C  P V T +ML
Sbjct: 294 MSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSML 353

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I +  + G+   A E    M +RGC  D+ TY  +I GL    ++ EA +L   +   G 
Sbjct: 354 IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 413

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +     + + +  L   G++    +L   M
Sbjct: 414 RPDAITYGTLMKGLCQTGNINIALQLHQEM 443



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 126/273 (46%), Gaps = 31/273 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E + V  QP++   ++L+D LCK G V  A        NK+              LE 
Sbjct: 516 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEA--------NKL--------------LEV 553

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           +IQ G   D  T  T +   C    +++A  LF  M+  G     P   T A ++  L Q
Sbjct: 554 VIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCM---PNVVTCATLMKGLCQ 610

Query: 285 NDRMEECFSLLGHMINS------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  ++    L  +M++        C P+  +Y  +++G+C  G+ +EA +  +EM   G 
Sbjct: 611 SGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGV 670

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+++Y   +   C +    +A  L+  M+++G  P V T+++LI M  + G+   A E
Sbjct: 671 IPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANE 730

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
               M +RGC  +  TY  ++ GL    ++ EA
Sbjct: 731 LLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 763



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 134/297 (45%), Gaps = 36/297 (12%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA---------IDTFCKA 247
           P++ T+NIL            G+  +  +++ G+ PD  TY+           ID  CK 
Sbjct: 8   PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             V EA +L E M  +G  +      TY+ +I  L    R+ E   L   M   GC PD 
Sbjct: 68  GKVIEANELLEVMIQRGCILD---IVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEM----GNKGYP--PDIVTYNCFLKVLCDNKNGDEA 361
            TY  +++G+C  G +  A +  +EM    G  G    P +++Y+  +  LC ++  DEA
Sbjct: 125 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 184

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             L+  M   G  P V +Y  LI  +   G+ + A   ++EM   G   DV T  V+ID 
Sbjct: 185 RELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDM 244

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478
                KV EA  LLE +V++G  L    +       ++I  L   H++S+  + F +
Sbjct: 245 FCKEGKVIEANELLEVMVHRGCILDIVTYS------TLIKGLCMKHRISEATQLFMS 295



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 129/280 (46%), Gaps = 25/280 (8%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K+   P +     L+  LC+ G +  A  + K + +   P    Y I             
Sbjct: 591 KLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP----YGI------------N 634

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  +Y+  ID  CK     EA +LF+ M+  G     P   +Y  +I    ++ + +
Sbjct: 635 CKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI---PDVISYTSLIHGFCRSGKWK 691

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L   M++ G  PDV+T+  +++ +C  GKV EA + LE M  +G  P+ VTY   +
Sbjct: 692 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLV 751

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----DK 405
           K LC N    EA +L+ +M ++GC P V TY  L+    + G    A E   +M     +
Sbjct: 752 KGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 811

Query: 406 RGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G     DV +Y ++IDGL    + +EA  L +E+   G+
Sbjct: 812 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 851



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 29/279 (10%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK--------VKPNANTYNIL---- 217
           K+  +P+  A   L+  LC+ G ++ A  + + + N         ++P+  T ++L    
Sbjct: 298 KLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDIL 357

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     + LE MIQ G   D  TY+T I   C    ++EA  LF  M+  G     
Sbjct: 358 CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC---R 414

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSG------CLPDVSTYKEVLEGMCLAGKV 323
           P A TY  ++  L Q   +     L   M+N        C P + +Y  +++G+C   + 
Sbjct: 415 PDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 474

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +EA +  EEM  +G  PD+++Y   +   C +   ++A  L+  M++VG  P V T ++L
Sbjct: 475 DEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVL 534

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           I M  + G+   A +    + +RGC  DV T   ++ GL
Sbjct: 535 IDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGL 573



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 12/228 (5%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-----STIS-SPTAKTYAIMIVAL 282
           G  PD+FT+N  I+  C  + V E       +  +G      T S  P   T +++I  L
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  ++ E   LL  MI  GC+ D+ TY  +++G+C+  ++ EA      M   G  PD 
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIE------VGCWPSVQTYNMLISMYFELGEPDGA 396
           +TY   +K LC   N + AL+L+  M+       + C P++ +Y+++I    +    D A
Sbjct: 125 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 184

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            E + EM  +G   DV +Y  +I G     K E+A  L  E+++ G++
Sbjct: 185 RELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQ 232



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 25/280 (8%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K+  +P+      L+  LC+ G ++ A  + + + N    +   Y I    TL       
Sbjct: 410 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLN----DTGRYGIKCKPTL------- 458

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
                 +Y+  ID  CK R   EA +LFE M+ +G     P   +Y  +I     + + E
Sbjct: 459 -----ISYSIIIDGLCKDRREDEARELFEEMKAQGIM---PDVISYTTLIHGFCLSGKWE 510

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L   M++ G  PDV+T   +++ +C  GKV EA K LE +  +G   D+VT    +
Sbjct: 511 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLV 570

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--- 406
           K LC      +A +L+ +M ++GC P+V T   L+    + G    A E    M      
Sbjct: 571 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP 630

Query: 407 ---GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               C  +  +Y ++IDGL  C + +EA  L +E+   G+
Sbjct: 631 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGV 670



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 16/197 (8%)

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC---------FLKV 351
           +G  PD  T+  ++  +C   +V E    +  +  +GY PDIVTY+           + +
Sbjct: 4   AGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDI 63

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---MYFELGEPDGAFETWHEMDKRGC 408
           LC      EA  L   MI+ GC   + TY+ LI    M   + E    F +   M K GC
Sbjct: 64  LCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMS---MQKLGC 120

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D  TY  ++ GL     +  A  L +E++N   +    K    L+  S+I D     +
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGI-KCKPTLISYSIIIDGLCKDR 179

Query: 469 LSDHMRKFYNPVIARRL 485
             D  R+ +  + A+ +
Sbjct: 180 REDEARELFKEMKAQGM 196


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 25/270 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP +   NL++ ALCK G +D A                      + T  EM      PD
Sbjct: 195 QPNLLTYNLIIKALCKLGQIDRA----------------------VDTFREMPLKNCNPD 232

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            FTY+T ++  CK R V EA  L + M+ +G     P   T+ ++I AL +N  +     
Sbjct: 233 VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCL---PNPVTFNVLIDALSKNGDLSRAAK 289

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L+ +M   GC+P+  TY  ++ G+CL GK+++A   LE+M +    P+ VTY   +  L 
Sbjct: 290 LVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLV 349

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +  ++ + +   M E G   +   Y+ LIS  F+ G+ + A   W EM ++GC  +V 
Sbjct: 350 KQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVV 409

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            Y   IDGL    K +EA  +L+E+++KG 
Sbjct: 410 VYGAFIDGLCRDEKPDEAEDILQEMLSKGF 439



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 149/381 (39%), Gaps = 81/381 (21%)

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
           P+ +N++ID LS     ++  +LV +M        K  VP +V                 
Sbjct: 268 PVTFNVLIDALSKNGDLSRAAKLVDNMF------LKGCVPNEV----------------- 304

Query: 175 PEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQT 221
                 N L+  LC  G +D A ++  K V +K  PN  TY  +            G+  
Sbjct: 305 ----TYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHI 360

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M + G   + + Y++ I    K      A  L++ M  KG     P    Y   I  
Sbjct: 361 LMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC---KPNVVVYGAFIDG 417

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEV---------------------------- 313
           L ++++ +E   +L  M++ G LP+  TY  +                            
Sbjct: 418 LCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHN 477

Query: 314 -------LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                  L G+C +G++ EA      M  +G  PD+V Y+  +K LCD  + D+ L+L+ 
Sbjct: 478 VVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFY 537

Query: 367 RMI--EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            M   E    P V TYN+L +          A +  + M   GC  D  T  + ++ L +
Sbjct: 538 EMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRE 597

Query: 425 -CSKVEEACFLLEEVVNKGLK 444
             +  ++    L+E+V + LK
Sbjct: 598 RINPPQDGRLFLDELVVRLLK 618



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 325 EAYKFLEEMGNKGYPPDIV-TYNCFLKVLCDNKNGDEALRLYGRMIEV---GCWPSVQTY 380
           EA  F   M N  +    V ++N  L V+    +   A + Y  +      G  P++ TY
Sbjct: 142 EAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTY 201

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           N++I    +LG+ D A +T+ EM  + C  DV TY  +++GL    +V+EA FLL+E+  
Sbjct: 202 NLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQA 261

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +G       F+  +  LS  GDL    KL D+M
Sbjct: 262 EGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNM 294


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 148/331 (44%), Gaps = 26/331 (7%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTL 222
           ++    +++D+ CK GL++ A      ++     PN  TY  L              +  
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE-------------FMRTKGSTISS 269
           E M+  G  P+  TY+  ID  CKA  V +A  +FE             + +        
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  ++    ++ R+EE   LL  M   GC P+   Y  +++G+C  GK++EA + 
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM   G+P  + TY+  +      K  D A ++  +M+E  C P+V  Y  +I    +
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G+ D A++    M+++GC  +V TY  MIDG     K+E    LLE + +KG+   Y  
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480
           +   +      G L   H L + M++ + P 
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 26/262 (9%)

Query: 200 CKRVKNKVK-----PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKRV N +      P+   +N L              + L++M++ GH P    YN  I 
Sbjct: 356 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIG 415

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C  +      ++  A   +  M   G  ++     ++      L    + E+ FS++ 
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFT---RCLCSAGKYEKAFSVIR 472

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            MI  G +PD STY +VL  +C A K+E A+   EEM   G   D+ TY   +   C   
Sbjct: 473 EMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A + +  M EVGC P+V TY  LI  Y +  +   A E +  M   GC  ++ TY 
Sbjct: 533 LIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 417 VMIDGLFDCSKVEEACFLLEEV 438
            +IDG     +VE+AC + E +
Sbjct: 593 ALIDGHCKAGQVEKACQIFERM 614



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 163/416 (39%), Gaps = 33/416 (7%)

Query: 57  AIIDNSNAYDNM-----EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNY 111
           AI D  +  D++     +K L      L+   V+ VL R          FF+WAG Q  Y
Sbjct: 103 AIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVL-RLIARPSAVISFFVWAGRQIGY 161

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV--------LLMILK 163
            H    YN ++D++     +      +  + D  K     F+ V V          + L+
Sbjct: 162 KHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALE 221

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK------NKVKPNANTYNIL 217
           +       + +P  +  N L+ A  K   +D A  I + +       +        Y++ 
Sbjct: 222 ELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLC 281

Query: 218 GMQTLEEMIQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
            +    E + +       PD   Y   I   C+A +  EA D    MR   +T   P   
Sbjct: 282 KVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMR---ATSCLPNVV 338

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ ++   +   ++  C  +L  M+  GC P    +  ++   C +G    AYK L++M
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNG------DEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              G+ P  V YN  +  +C +K+       D A + Y  M+  G   +    +      
Sbjct: 399 VKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCL 458

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              G+ + AF    EM  +G   D  TY  +++ L + SK+E A  L EE+   GL
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 51/311 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNIL------------GMQ 220
           +P     + L+D LCK G +D A+ +   +     P    TY+ L              +
Sbjct: 671 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 730

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   ID  CK     EA  L + M  KG     P   TY  MI 
Sbjct: 731 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGC---QPNVVTYTAMID 787

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 ++E C  LL  M + G  P+  TY+ +++  C  G ++ A+  LEEM    +P 
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 341 DIVTYN--------------------------CFLKV---LCDNKNGDEALRLYGRMI-E 370
               Y                            FL V   L DN    + L +  R++ E
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907

Query: 371 VGCWPSV-----QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           V  + +       TYN LI       + + AF+ + EM K+G   ++ ++C +I GLF  
Sbjct: 908 VATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 967

Query: 426 SKVEEACFLLE 436
           SK+ EA  LL+
Sbjct: 968 SKISEALLLLD 978



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 135/340 (39%), Gaps = 38/340 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------------- 217
           P     N L+ A C  G   YA  + K+ VK    P    YNIL                
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLL 429

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +   EM+  G   +    ++     C A    +A  +   M  +G     P   TY
Sbjct: 430 DLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI---PDTSTY 486

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + ++  L    +ME  F L   M   G + DV TY  +++  C AG +E+A K+  EM  
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P++VTY   +      K    A  L+  M+  GC P++ TY+ LI  + + G+ + 
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DG     +VEEA  LL+ + 
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 666

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +G +     +D+ +  L  +G L    ++   M +   P
Sbjct: 667 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 706


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 26/330 (7%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTL 222
           ++    +++D+ CK GL++ A      ++     PN  TY  L              +  
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE-------------FMRTKGSTISS 269
           E M+  G  P+  TY+  ID  CKA  V +A  +FE             + +        
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  ++    ++ R+EE   LL  M   GC P+   Y  +++G+C  GK++EA + 
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM   G+P  + TY+  +      K  D A ++  +M+E  C P+V  Y  +I    +
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G+ D A++    M+++GC  +V TY  MIDG     K+E    LLE + +KG+   Y  
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           +   +      G L   H L + M++ + P
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWP 846



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 26/262 (9%)

Query: 200 CKRVKNKVK-----PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKRV N +      P+   +N L              + L++M++ GH P    YN  I 
Sbjct: 356 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIG 415

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C  +      ++  A   +  M   G  ++     ++      L    + E+ FS++ 
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFT---RCLCSAGKYEKAFSVIR 472

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            MI  G +PD STY +VL  +C A K+E A+   EEM   G   D+ TY   +   C   
Sbjct: 473 EMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A + +  M EVGC P+V TY  LI  Y +  +   A E +  M   GC  ++ TY 
Sbjct: 533 LIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 417 VMIDGLFDCSKVEEACFLLEEV 438
            +IDG     +VE+AC + E +
Sbjct: 593 ALIDGHCKAGQVEKACQIFERM 614



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 163/416 (39%), Gaps = 33/416 (7%)

Query: 57  AIIDNSNAYDNM-----EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNY 111
           AI D  +  D++     +K L      L+   V+ VL R          FF+WAG Q  Y
Sbjct: 103 AIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVL-RLIARPSAVISFFVWAGRQIGY 161

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV--------LLMILK 163
            H    YN ++D++     +      +  + D  K     F+ V V          + L+
Sbjct: 162 KHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALE 221

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK------NKVKPNANTYNIL 217
           +       + +P  +  N L+ A  K   +D A  I + +       +        Y++ 
Sbjct: 222 ELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLC 281

Query: 218 GMQTLEEMIQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
            +    E + +       PD   Y   I   C+A +  EA D    MR   +T   P   
Sbjct: 282 KVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMR---ATSCLPNVV 338

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ ++   +   ++  C  +L  M+  GC P    +  ++   C +G    AYK L++M
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNG------DEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              G+ P  V YN  +  +C +K+       D A + Y  M+  G   +    +      
Sbjct: 399 VKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCL 458

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              G+ + AF    EM  +G   D  TY  +++ L + SK+E A  L EE+   GL
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 51/311 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNIL------------GMQ 220
           +P     + L+D LCK G +D A+ +   +     P    TY+ L              +
Sbjct: 671 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 730

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   ID  CK     EA  L + M  KG     P   TY  MI 
Sbjct: 731 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGC---QPNVVTYTAMID 787

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 ++E C  LL  M + G  P+  TY+ +++  C  G ++ A+  LEEM    +P 
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 341 DIVTYN--------------------------CFLKV---LCDNKNGDEALRLYGRMI-E 370
               Y                            FL V   L DN    + L +  R++ E
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907

Query: 371 VGCWPSV-----QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           V  + +       TYN LI       + + AF+ + EM K+G   ++ ++C +I GLF  
Sbjct: 908 VATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 967

Query: 426 SKVEEACFLLE 436
           SK+ EA  LL+
Sbjct: 968 SKISEALLLLD 978



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 135/340 (39%), Gaps = 38/340 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------------- 217
           P     N L+ A C  G   YA  + K+ VK    P    YNIL                
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLL 429

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +   EM+  G   +    ++     C A    +A  +   M  +G     P   TY
Sbjct: 430 DLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI---PDTSTY 486

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + ++  L    +ME  F L   M   G + DV TY  +++  C AG +E+A K+  EM  
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P++VTY   +      K    A  L+  M+  GC P++ TY+ LI  + + G+ + 
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DG     +VEEA  LL+ + 
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 666

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +G +     +D+ +  L  +G L    ++   M +   P
Sbjct: 667 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 706


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 25/270 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP +   NL++ ALCK G +D A                      + T  EM      PD
Sbjct: 171 QPNLLTYNLIIKALCKLGQIDRA----------------------VDTFREMPLKNCNPD 208

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            FTY+T ++  CK R V EA  L + M+ +G     P   T+ ++I AL +N  +     
Sbjct: 209 VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCL---PNPVTFNVLIDALSKNGDLSRAAK 265

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L+ +M   GC+P+  TY  ++ G+CL GK+++A   LE+M +    P+ VTY   +  L 
Sbjct: 266 LVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLV 325

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +  ++ + +   M E G   +   Y+ LIS  F+ G+ + A   W EM ++GC  +V 
Sbjct: 326 KQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVV 385

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            Y   IDGL    K +EA  +L+E+++KG 
Sbjct: 386 VYGAFIDGLCRDEKPDEAEDILQEMLSKGF 415



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 149/381 (39%), Gaps = 81/381 (21%)

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
           P+ +N++ID LS     ++  +LV +M        K  VP +V                 
Sbjct: 244 PVTFNVLIDALSKNGDLSRAAKLVDNMF------LKGCVPNEV----------------- 280

Query: 175 PEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQT 221
                 N L+  LC  G +D A ++  K V +K  PN  TY  +            G+  
Sbjct: 281 ----TYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHI 336

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M + G   + + Y++ I    K      A  L++ M  KG     P    Y   I  
Sbjct: 337 LMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC---KPNVVVYGAFIDG 393

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEV---------------------------- 313
           L ++++ +E   +L  M++ G LP+  TY  +                            
Sbjct: 394 LCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHN 453

Query: 314 -------LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                  L G+C +G++ EA      M  +G  PD+V Y+  +K LCD  + D+ L+L+ 
Sbjct: 454 VVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFY 513

Query: 367 RMI--EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            M   E    P V TYN+L +          A +  + M   GC  D  T  + ++ L +
Sbjct: 514 EMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRE 573

Query: 425 -CSKVEEACFLLEEVVNKGLK 444
             +  ++    L+E+V + LK
Sbjct: 574 RINPPQDGRLFLDELVVRLLK 594



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 325 EAYKFLEEMGNKGYPPDIV-TYNCFLKVLCDNKNGDEALRLYGRMIEV---GCWPSVQTY 380
           EA  F   M N  +    V ++N  L V+    +   A + Y  +      G  P++ TY
Sbjct: 118 EAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTY 177

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           N++I    +LG+ D A +T+ EM  + C  DV TY  +++GL    +V+EA FLL+E+  
Sbjct: 178 NLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQA 237

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +G       F+  +  LS  GDL    KL D+M
Sbjct: 238 EGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNM 270


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 21/317 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRV-----KNKVKPNANTYNIL------- 217
           ++  QP +   N LL+AL +     ++  + K V     K  VK N N++NIL       
Sbjct: 152 RLGMQPTLLTCNTLLNALVRFP-SSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCME 210

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 ++ L +M   G  PDN TYNT +D  CK   + EA DL   M+ KG     P  
Sbjct: 211 NRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLF---PNR 267

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T+ I++V   +   ++E  +++  M  +  +PD  TY  ++ G C  G++ EA +  EE
Sbjct: 268 TTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREE 327

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M N    PD+VTYN  +    ++ + +E  +L   M   G  P+  TYN+++  + + G+
Sbjct: 328 MENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGK 387

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D   +T  +M++ GC  D+ TY  +I       K++EA  L++E+  KGLK+     ++
Sbjct: 388 MDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNT 447

Query: 453 YLMQLSVIGDLGAIHKL 469
            L  L     L   H L
Sbjct: 448 MLRALCRERKLDEAHDL 464



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 134/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P     N+L+   C+ G +  A  + + + +N V P+A TYN++             M+ 
Sbjct: 265 PNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRL 324

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM  +  +PD  TYNT I+   +     E   L E M  +G     P + TY +M+  
Sbjct: 325 REEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGM---KPNSVTYNVMVKW 381

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            V+  +M+E    +  M  SGCLPD+ TY  ++   C  GK++EA++ ++EMG KG   D
Sbjct: 382 FVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMD 441

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT N  L+ LC  +  DEA  L       G +    +Y  LI  YF+  +   A   W 
Sbjct: 442 DVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWD 501

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM ++     + TY  MI GL    K  +A   L+E++  GL
Sbjct: 502 EMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGL 543



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 134/314 (42%), Gaps = 45/314 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAE-TICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     N+++    K G +D  + T+ K  ++   P+  TYN L              +
Sbjct: 369 KPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFR 428

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS----------- 269
            ++EM + G   D+ T NT +   C+ R + EA DL    R +G  +             
Sbjct: 429 LMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYF 488

Query: 270 ---------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P+  TY  MI  L Q  +  +    L  ++ SG +PD  
Sbjct: 489 KHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEI 548

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G C  G+VE+A++F  +M  K + PD+VT N  L  LC     ++AL+L+   
Sbjct: 549 TYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTW 608

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           I  G      +YN +I    +      AF+   EM+++    D  TY  ++ GL D  ++
Sbjct: 609 ISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRM 668

Query: 429 EEACFLLEEVVNKG 442
           ++A   + ++  KG
Sbjct: 669 KDAEEFISKIAEKG 682



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 150/329 (45%), Gaps = 18/329 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILG 218
           M L++  E +K+   P++   N L++   + G  +    + + ++ + +KPN+ TYN++ 
Sbjct: 322 MRLREEMENLKL--SPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMV 379

Query: 219 M------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                        +T+ +M + G  PD  TYNT I   CK   + EA  L + M  KG  
Sbjct: 380 KWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLK 439

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           +   T  T   M+ AL +  +++E   LL      G   D  +Y  ++ G     K  +A
Sbjct: 440 MDDVTLNT---MLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQA 496

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +  +EM  K   P I+TYN  +  LC     ++A+     ++E G  P   TYN +I  
Sbjct: 497 LRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHG 556

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           Y + G+ + AF+  ++M ++    DV T   ++ GL     +E+A  L    ++KG  + 
Sbjct: 557 YCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVD 616

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              +++ ++ L      G    L + M +
Sbjct: 617 AVSYNTIILSLCKEKRFGEAFDLLEEMEE 645



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 126/312 (40%), Gaps = 19/312 (6%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------------GMQTLE 223
           L++ + A   CG    A  I  R+K   ++P   T N L                     
Sbjct: 127 LDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFT 186

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           + I++G   +  ++N  I   C      EA  +   MR  G     P   TY  ++  L 
Sbjct: 187 DFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGC---PPDNITYNTILDGLC 243

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R+ E   LL  M N G  P+ +T+  ++ G C  G ++EA   +E M      PD  
Sbjct: 244 KKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAW 303

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +   C      EA+RL   M  +   P V TYN LI+  FE G  +  F+   EM
Sbjct: 304 TYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEM 363

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           + RG   +  TY VM+       K++E    + ++   G       +++ +     +G +
Sbjct: 364 EGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKM 423

Query: 464 GAIHKLSDHMRK 475
               +L D M +
Sbjct: 424 DEAFRLMDEMGR 435



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 16/246 (6%)

Query: 179 ALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            LN +L ALC+   +D A + +C   +     +  +Y  L             ++  +EM
Sbjct: 444 TLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEM 503

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            +    P   TYN+ I   C+     +A D  + +   G     P   TY  +I    Q 
Sbjct: 504 KEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLV---PDEITYNTIIHGYCQE 560

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            ++E+ F     M+     PDV T   +L G+C  G +E+A K      +KG   D V+Y
Sbjct: 561 GQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSY 620

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC  K   EA  L   M E    P   TYN ++    + G    A E   ++ +
Sbjct: 621 NTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAE 680

Query: 406 RGCAQD 411
           +G +++
Sbjct: 681 KGKSEN 686


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 139/284 (48%), Gaps = 27/284 (9%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
           ++L  L+   +  K    P+I   NL+++ LCK G V  A  +                 
Sbjct: 378 LVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNL----------------- 420

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                L   I  G+ PD FT+NT ID +CK   +  A  + + M + G T   P   TY 
Sbjct: 421 -----LNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVT---PDVITYN 472

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L +  + E+       ++  GCLP++ TY  ++E +C A KV EA   LEE+ N+
Sbjct: 473 SILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNR 532

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELGEPDG 395
           G  PD V++   +   C+N + DEA +L+ RM  +     +V TYN++I+ + E  + D 
Sbjct: 533 GLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDM 592

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC-FLLEEV 438
           A + +HEM  +GC  D  TY VMIDG      V     FLL+E+
Sbjct: 593 AQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEI 636



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 156/365 (42%), Gaps = 52/365 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           + + +++   P I   N L+  LCK G +   E +  +V KN V PN  T+NI       
Sbjct: 204 FNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCR 263

Query: 218 -----GMQT--------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
                G  +        L +M+  G  PD+FTYNT I  + K   + +A+ + +  + KG
Sbjct: 264 KGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKG 323

Query: 265 ---------STISS-----------------------PTAKTYAIMIVALVQNDRMEECF 292
                    S I                         P+   Y  +I  L Q   + +  
Sbjct: 324 FVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKAL 383

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            L+  M   G  PD+ TY  V+ G+C  G V +A   L     KGY PDI T+N  +   
Sbjct: 384 QLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGY 443

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C     D A+ +   M   G  P V TYN +++   +  +P+   ET+  + ++GC  ++
Sbjct: 444 CKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNI 503

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            TY ++I+ L    KV EA  LLEE+ N+GL      F + +      GDL   ++L   
Sbjct: 504 ITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRR 563

Query: 473 MRKFY 477
           M + Y
Sbjct: 564 MEQQY 568



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 176/418 (42%), Gaps = 50/418 (11%)

Query: 85  VGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY 144
           V  + ++Q +   A   F     +D + H  L Y  MI+ L        +F  +  +L  
Sbjct: 10  VAAVLKYQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGF----HGEFDAMERVLME 65

Query: 145 MKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCG 191
           M+ N    +   V +  ++ Y  K KV+              +P I + N +++ L + G
Sbjct: 66  MRLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYG 125

Query: 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
             + A  +  R+K++                      G APD  T+   I +FC+ +   
Sbjct: 126 YFNQAHKVYLRMKHE----------------------GIAPDVCTFTIRIKSFCRTKRPL 163

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
            A  L   M ++G  ++   A  Y  +I    + +   E + L   M+  G  P ++T+ 
Sbjct: 164 AALRLLNNMPSQGCELN---AVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFN 220

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD-------NKNGDEALRL 364
           +++  +C  G ++E  K L ++   G  P++ T+N F++ LC        N    EA   
Sbjct: 221 KLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENY 280

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
             +M+  G  P   TYN +I  Y ++G+   A     +   +G   D  TYC +I G+  
Sbjct: 281 LHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQ 340

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG-DLGAIHKLSDHMRKFYNPVI 481
              ++ A  L EE + KGLK     +++ +  LS  G  L A+  ++D  ++  +P I
Sbjct: 341 DGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDI 398



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 105/247 (42%), Gaps = 46/247 (18%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN-ILG-----------MQT 221
           P+I   N L+D  CK   +D A  I   +  + V P+  TYN IL            M+T
Sbjct: 431 PDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMET 490

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------STISS--- 269
            + +++ G  P+  TYN  I++ CKAR VTEA DL E +R +G         + IS    
Sbjct: 491 FKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCN 550

Query: 270 ---------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                 T  TY IMI A  +   M+    L   M + GC PD  
Sbjct: 551 NGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSY 610

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ +++G C  G V   Y FL +    G+ P + T+   +  LC      EA+ +   M
Sbjct: 611 TYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLM 670

Query: 369 IEVGCWP 375
           +  G  P
Sbjct: 671 VRTGVVP 677



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 78/216 (36%), Gaps = 46/216 (21%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N +L+ LCK     D  ET    ++    PN  TYNIL             +  
Sbjct: 466 PDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDL 525

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK------------------ 263
           LEE+   G  PD  ++ T I  FC    + EA  LF  M  +                  
Sbjct: 526 LEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFS 585

Query: 264 ---------------GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                          G     P + TY +MI    +   +   +  L   I  G +P ++
Sbjct: 586 EKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLT 645

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           T+  V+  +C+  +V EA   +  M   G  P+ V 
Sbjct: 646 TFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV 681


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 129/265 (48%), Gaps = 25/265 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E I     P +   N+L++ALCK G V  A+                 N+L + T E   
Sbjct: 210 EMILKNINPGVYIYNILINALCKEGNVKEAK-----------------NLLAVMTKE--- 249

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  P   TY+T +D +C    V  A  +F  M   G    +P   +Y IMI  L +  
Sbjct: 250 --GIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGV---NPNVYSYNIMINGLCKCK 304

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R++E  +LL  M++   +PD  TY  +++G+C +G++  A   + EM ++G P D+VTY 
Sbjct: 305 RVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYT 364

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L  LC N+N D+A  L+ +M E G  P++ TY  LI    + G    A E +  +  +
Sbjct: 365 SLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK 424

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC  DV TY VMI GL      +EA
Sbjct: 425 GCCIDVWTYTVMISGLCKEGMFDEA 449



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 151/338 (44%), Gaps = 23/338 (6%)

Query: 162 LKQYTEKIKVKTQPEINA-------LNLLLDALCKCGLVDYAETICKRV-KNKVKPNANT 213
           +KQY   I +  Q E+         LN+L++  C  G + ++ ++  ++ K   +P+  T
Sbjct: 23  MKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTIT 82

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
            N L             +   ++++  G   D+ +Y T ++  CK      A  L   + 
Sbjct: 83  LNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIE 142

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            + +    P    Y  +I  L ++  + E + L   M   G  PD  TY  ++ G CL G
Sbjct: 143 DRST---RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLG 199

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           ++  A+  L+EM  K   P +  YN  +  LC   N  EA  L   M + G  P V TY+
Sbjct: 200 QLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYS 259

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+  Y  +GE   A + +H M + G   +V +Y +MI+GL  C +V+EA  LL E+++K
Sbjct: 260 TLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHK 319

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +      ++S +  L   G + +   L + M     P
Sbjct: 320 NMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQP 357



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 132/304 (43%), Gaps = 16/304 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           LL+ LCK G    A  + + ++++  +PN   YN +                  EM   G
Sbjct: 121 LLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TY T I  FC    +  A  L + M  K     +P    Y I+I AL +   ++
Sbjct: 181 IFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNI---NPGVYIYNILINALCKEGNVK 237

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +LL  M   G  P V TY  +++G CL G+V+ A +    M   G  P++ +YN  +
Sbjct: 238 EAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMI 297

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K  DEA+ L   M+     P   TYN LI    + G    A    +EM  RG  
Sbjct: 298 NGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQP 357

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            DV TY  ++D L     +++A  L  ++  +G++     + + +  L   G L    +L
Sbjct: 358 ADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQEL 417

Query: 470 SDHM 473
             H+
Sbjct: 418 FQHL 421



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 5/220 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+ + H P    +N  + +  K +    A  L + M  KG   +  T     I+I     
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLN---ILINCFCH 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             +M   FS+LG ++  G  PD  T   +++G+CL G+V+++  F +++  +G+  D V+
Sbjct: 58  LGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVS 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIE-VGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           Y   L  LC       A++L  RMIE     P+V  YN +I    +    + A++ + EM
Sbjct: 118 YGTLLNGLCKIGETRCAVKLL-RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D RG   D  TY  +I G     ++  A  LL+E++ K +
Sbjct: 177 DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNI 216



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%)

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P I+ +N  L  L   K    A+ L  +M   G   +  T N+LI+ +  LG+   +F
Sbjct: 6   HTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSF 65

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               ++ K G   D  T   ++ GL    +V+++    ++VV +G ++ +  + + L  L
Sbjct: 66  SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 458 SVIGD 462
             IG+
Sbjct: 126 CKIGE 130


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 203/479 (42%), Gaps = 68/479 (14%)

Query: 57  AIIDNSNAYDNMEKALDSLG----VPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDN 110
           A++D S+   NME  LD+      + L+   V  +L+  + + K  +A RFF WAG Q  
Sbjct: 83  ALLDGSS---NMESNLDTFCHMFLIKLSPSFVSFILRSTELQTKPDVAIRFFTWAGKQKK 139

Query: 111 YAHEPLAYNLMIDILS------STKYKAKQFRLVCSMLDYMKRNN--KVFVPVDVLLMIL 162
           Y H    Y  +ID+L+      S K    +F+ +  ++     N+  K F  + ++  +L
Sbjct: 140 YTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVL 199

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
             +    +   +P + + N L++ L     ++ AE + + ++N K+ P+  TYN +    
Sbjct: 200 WVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGY 259

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     + L+ M     APD  TY T I              L+  M  KG  I  
Sbjct: 260 CEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIP- 318

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
                Y+++I  L ++ +  E +++  +MI+ GC  +V+ Y  +++     G + EA   
Sbjct: 319 --PHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLL 376

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL--------------------------- 362
            + M  +G  PD VTY   +  LC +   DEAL                           
Sbjct: 377 FKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGK 436

Query: 363 --------RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                   R++  M++ GC P    YN LI    + G+ D A      M+  GC Q V T
Sbjct: 437 SGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYT 496

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           Y ++I GLF   + EEA  L + +++KG+      F +    L + G +    K+ D M
Sbjct: 497 YTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEM 555



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 122/276 (44%), Gaps = 6/276 (2%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G    E MI  G   +   Y   ID+  K   + EA  LF+ M+ +G     P   TY +
Sbjct: 338 GYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGL---EPDEVTYGV 394

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ +L ++ R++E    +      G   +   Y  +++G+  +G+V+EA +   EM  KG
Sbjct: 395 IVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKG 454

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
            PPD   YN  +  L      DEAL L  RM   GC  +V TY +LI+  F     + A 
Sbjct: 455 CPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEAL 514

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             W  M  +G       +  +  GL    KV  AC +L+E+   G+ +P   FD  +  L
Sbjct: 515 TLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGV-IPETAFDDMINIL 573

Query: 458 SVIGDLGAIHKLSDHM--RKFYNPVIARRLALNQKR 491
              G +    KL+D +  R    P   R + +N  R
Sbjct: 574 CKAGRIKEACKLADGIVDRGREIPGRVRTVLINALR 609



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 26/208 (12%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E +K    P+    N L+DAL KCG +D A  + KR++              +   ++
Sbjct: 447 FYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRME--------------VDGCDQ 492

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
            +        +TY   I    +     EA  L++ M  KG T   PTA  +  +   L  
Sbjct: 493 TV--------YTYTILITGLFREHRNEEALTLWDLMIDKGIT---PTAAAFRALSTGLCL 541

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           + ++     +L  M   G +P+ + + +++  +C AG+++EA K  + + ++G       
Sbjct: 542 SGKVARACKILDEMAPMGVIPE-TAFDDMINILCKAGRIKEACKLADGIVDRGREIPGRV 600

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVG 372
               +  L    N D AL+L    I +G
Sbjct: 601 RTVLINALRKAGNADLALKLMRSKIGIG 628


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 185/424 (43%), Gaps = 57/424 (13%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
           GV     F + +AF  F WA + + + H P  Y  MID+      K +QF L   ++D M
Sbjct: 119 GVRHGIPFPQTLAF--FNWATNLEEFGHSPEPYMEMIDLAG----KVRQFDLAWQLIDLM 172

Query: 146 KRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-INALNLLLDALCKCGLVDYAETICKRVK 204
           K  N V +PV+   +++++Y   +K     E ++A N + D  CK   + ++  I    K
Sbjct: 173 KTRN-VEIPVETFTILVRRY---VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSK 228

Query: 205 NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
            +    A ++      +L++  +    PD   Y + +  +C+A  ++EA  +F  M+  G
Sbjct: 229 KRRAIEAQSF----FDSLKDRFE----PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 280

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P   TY+I+I AL ++ ++     +   MI+ GC P+  T+  ++     AG+ E
Sbjct: 281 ---IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTE 337

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL---------------------- 362
           +  +   +M   G PPD +TYN  ++  C + N +EA+                      
Sbjct: 338 KVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFG 397

Query: 363 ------------RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                       R++ +M ++ C P+  TYN+L+ M+ +    D   +   EMD+     
Sbjct: 398 CISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEP 457

Query: 411 DVDTYCVMIDGLFDCSKVEEA-CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           + +TY V+I           A  F  E +  K L+     ++  L QL   G L    +L
Sbjct: 458 NANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEEL 517

Query: 470 SDHM 473
            + M
Sbjct: 518 VEKM 521



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 30/256 (11%)

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY------MKRNN--KVFVPVD 156
           AG Q N       Y+++ID L  +    +   +   M+D       +  NN  +V V   
Sbjct: 279 AGIQPNV----YTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAG 334

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN- 215
               +L+ Y +  ++   P+    N L+++ C+   ++ A  I   VK     NA+++N 
Sbjct: 335 RTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNP 394

Query: 216 ILG-----------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK- 263
           I G            +   +M  +   P+  TYN  +  F   +    + D+   +R + 
Sbjct: 395 IFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKK----STDMVLKLRKEM 450

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGK 322
                 P A TY ++I            +S    MI   CL P +  Y+ VL+ +  AG+
Sbjct: 451 DENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQ 510

Query: 323 VEEAYKFLEEMGNKGY 338
           +++  + +E+M N+G+
Sbjct: 511 LKKHEELVEKMVNRGF 526


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 188/422 (44%), Gaps = 38/422 (9%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
           GV     F + +AF  F WA   + +   P  YN MID+      K + F L   ++D M
Sbjct: 116 GVRHGIPFLQSLAF--FNWATTLEGFPSSPEPYNEMIDLAG----KLRHFDLAWHLIDLM 169

Query: 146 KRNNKVFVPVDVLLMILKQY------TEKIKV-------KTQPEINALNLLLDALCKCGL 192
           K +  V + V    +++++Y       E +           +P+  + ++++ +LCK   
Sbjct: 170 K-SRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRR 228

Query: 193 VDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
              AE     +K+K +P+   Y  L              +   +M + G  P+ +TY+  
Sbjct: 229 ASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIV 288

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ID+ C+   +T A D+F  M   G     P A T+  ++   V+  R E+   +   M  
Sbjct: 289 IDSLCRCGQITRAHDVFSEMIDAGC---DPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKR 345

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GC  D  +Y  ++E  C    ++EA K L+ M  KG  P+  T+N     + +  + + 
Sbjct: 346 LGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNG 405

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A R+Y +M E+ C P+  TYN+L+ M+ +    D   +   EMD+     +V+TY ++I 
Sbjct: 406 AHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILIL 465

Query: 421 GLFDCSKVEEACFLLEEVV-NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM--RKFY 477
              +      A  L++E+V  K LK     +++ L  L   G L    +L + M  R F 
Sbjct: 466 MFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARGFV 525

Query: 478 NP 479
           +P
Sbjct: 526 SP 527


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 152/327 (46%), Gaps = 42/327 (12%)

Query: 149 NKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKV 207
           N+V     VL  ILK       +  QP+      L+  +C  G +  A     K +    
Sbjct: 110 NRVGFAFSVLAKILK-------LGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGF 162

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +P+  TY  L             ++ L  M+Q    P+ F YNT ID+ CK R VTEA +
Sbjct: 163 RPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFN 222

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LF  M TKG    SP   TY  +I AL      +   +LL  M++S  +PDV ++  V++
Sbjct: 223 LFSEMVTKGI---SPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            +C  GKV EA+  +++M  +G  P++VTY   +   C     DEA++++  M+  GC P
Sbjct: 280 ALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMP 339

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDK-------------------RGCAQDVDTYC 416
           +V +YN LI+ Y ++   D A      MD                    +GC  +V +Y 
Sbjct: 340 NVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYN 399

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +I+G     ++++A +L  E+  + L
Sbjct: 400 TLINGYCKIQRIDKAMYLFGEMCRQEL 426



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 158/378 (41%), Gaps = 43/378 (11%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVFVPVDV--LL 159
           Q N      AYN +ID L   +   + F L   M+      D    N+ +    ++    
Sbjct: 194 QKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWK 253

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL- 217
            +     E +  K  P++ + N ++DALCK G V  A  +  K ++  V+PN  TY  L 
Sbjct: 254 HVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALM 313

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT--------------- 251
                       ++  + M+  G  P+  +YNT I+ +CK + +                
Sbjct: 314 DGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCY 373

Query: 252 ----EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
               EA  +F+ M  KG     P   +Y  +I    +  R+++   L G M     +PD 
Sbjct: 374 LNMDEAVKVFDTMVCKGCM---PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDT 430

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            TY  ++ G+C   ++++A     EM      P++VTY   L  LC N+   EA+ L   
Sbjct: 431 VTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKA 490

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           +      P +Q  N+ I      GE + A + +  +  +G   DV TY +MI+GL     
Sbjct: 491 IEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGL 550

Query: 428 VEEACFLLEEVVNKGLKL 445
           ++EA  L  E+   G  L
Sbjct: 551 LDEASKLFREMDENGCTL 568



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 25/268 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I  L++L+++ C    V +A ++                      L +++++GH PD 
Sbjct: 94  PNIYTLHILINSFCHLNRVGFAFSV----------------------LAKILKLGHQPDT 131

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T+ T I   C    + EA  LF+ M  +G     P   TY  +I  L +         L
Sbjct: 132 ATFTTLIRGICVEGKIGEALHLFDKMIGEGF---RPDVVTYGTLINGLCKVGNTSAAIRL 188

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           LG M+   C P+V  Y  +++ +C   +V EA+    EM  KG  PDI TYN  +  LC+
Sbjct: 189 LGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCN 248

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                    L   M++    P V ++N ++    + G+   A +   +M +RG   +V T
Sbjct: 249 LCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVT 308

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           Y  ++DG    S+++EA  + + +V KG
Sbjct: 309 YTALMDGHCLLSEMDEAVKVFDTMVCKG 336



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 3/256 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + +   M++M   P    +N  + +  K +  +    L   M + G     P   T  I
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGI---PPNIYTLHI 101

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +    +R+   FS+L  ++  G  PD +T+  ++ G+C+ GK+ EA    ++M  +G
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEG 161

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + PD+VTY   +  LC   N   A+RL G M++  C P+V  YN +I    +  +   AF
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + EM  +G + D+ TY  +I  L +  + +    LL E+V+  +      F++ +  L
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDAL 281

Query: 458 SVIGDLGAIHKLSDHM 473
              G +   H + D M
Sbjct: 282 CKEGKVTEAHDVVDKM 297



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 98/228 (42%), Gaps = 15/228 (6%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  +YN L             M    EM +    PD  TY+T I   C    + +A  L
Sbjct: 393 PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIAL 452

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           F  M    S I  P   TY I++  L +N  + E  +LL  +  S   PD+      ++G
Sbjct: 453 FHEM-VACSQI--PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDG 509

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           MC AG++E A      + +KG  PD+ TY+  +  LC     DEA +L+  M E GC  +
Sbjct: 510 MCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 569

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              YN +   +    E   A +   EM  RG + D  T  + +  L D
Sbjct: 570 GCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSD 617


>gi|115460906|ref|NP_001054053.1| Os04g0643700 [Oryza sativa Japonica Group]
 gi|38344884|emb|CAD41907.2| OSJNBa0033G05.8 [Oryza sativa Japonica Group]
 gi|113565624|dbj|BAF15967.1| Os04g0643700 [Oryza sativa Japonica Group]
 gi|125591829|gb|EAZ32179.1| hypothetical protein OsJ_16385 [Oryza sativa Japonica Group]
 gi|215701473|dbj|BAG92897.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704877|dbj|BAG94905.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 442

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 177/405 (43%), Gaps = 46/405 (11%)

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQD--NYAHEPLAYNLMIDILSSTKYKAKQF 135
           PL   +V+  L  +  + + A  FF W+   D  N    P      +D+L     K  +F
Sbjct: 30  PLDATAVLETLSLYANDWRRALEFFHWSASPDGANVPPTPATVARAVDVLG----KHFEF 85

Query: 136 RLVCSML----DYMKRNNKVFVP--------------VDVLLMILKQYTEKIKVKTQPEI 177
            L  S+L    D  + +     P              +D  +         I ++ +   
Sbjct: 86  PLATSLLVSHHDPGRADPSFLRPALRSLLNRLAAANLIDDAIRAFDSTAGSIGLRDEASF 145

Query: 178 NALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL--GM----------QTLEE 224
           +A   L+DALC    VD A  +C  +      P   TYN+L  G           Q   +
Sbjct: 146 HA---LVDALCDHRRVDEAHHLCFGKDPPPFPPVTKTYNLLLRGWAKTRAWARLRQLWFD 202

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M   G A D  +Y+  +D   K+    +A  +F+ M+ KG  I    A   AI  V L Q
Sbjct: 203 MDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDV-VAYNTAIHSVGLAQ 261

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              ++    L   M+++GC P+ ST+  +++ +C  G+ +E Y F+++M   G  P+++T
Sbjct: 262 G--VDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLT 319

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+CF + L   +   E L L+ +M+E GC P + TY MLI  +   G     F  W  M+
Sbjct: 320 YHCFFQYLSRPQ---EVLGLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFIVWKAME 376

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           K+G + D   Y  +ID L     V+ A    EE+++KGL    RK
Sbjct: 377 KQGLSPDAFAYNSLIDALLQKGMVDLARKYDEEMLSKGLSPKPRK 421



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           L D +++  +++ +C   +V+EA+          +PP   TYN  L+     +      +
Sbjct: 139 LRDEASFHALVDALCDHRRVDEAHHLCFGKDPPPFPPVTKTYNLLLRGWAKTRAWARLRQ 198

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  M   G    + +Y++ +    + G+P  AF+ + EM ++G A DV  Y   I  + 
Sbjct: 199 LWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVG 258

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
               V+ A  L  ++V+ G K     F++ +  L   G     +     M KF
Sbjct: 259 LAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKF 311


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 133/276 (48%), Gaps = 16/276 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL------------GMQ 220
           P++   + +++  CK G +D A  I + +  ++ + P+  TY  +              +
Sbjct: 75  PDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACE 134

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM   G  PD FT++  I  +C AR V EA  L++ + T  S    P   TY  +I 
Sbjct: 135 MVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSW--KPDVVTYTALID 192

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              ++  +E+   +LG M    C+P+V TY  +L G+C AG +++A      M +KG  P
Sbjct: 193 GFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVP 252

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTY   +  LC     D A  L   M    C P   +YN L+  Y  LG  + A + +
Sbjct: 253 NVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLF 312

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
            EM  + C  D  TY  ++ G  + S++EEA FLLE
Sbjct: 313 KEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLE 348



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 138/279 (49%), Gaps = 16/279 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           QP +    +++D  CK   +  A    ++++  V PN  TYN++              + 
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 222 LEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           L+EM      APD  TY+T I+ FCK   +  A ++   M T+     +P   TY  ++ 
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGI--APDVVTYTSVVD 121

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE-MGNKGYP 339
            L ++ +M+    ++  M   G  PD  T+  ++ G C A KV+EA K  +E + +  + 
Sbjct: 122 GLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWK 181

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+VTY   +   C + N ++A+++ G M    C P+V TY+ L+    + G+ D A + 
Sbjct: 182 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 241

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           +  M  +GC  +V TY  +I GL    KV+ A  L++E+
Sbjct: 242 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM 280



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 19/322 (5%)

Query: 164 QYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL--- 217
           +   ++K+K  +P+    + L+   C    VD A  + K +   +  KP+  TY  L   
Sbjct: 134 EMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDG 193

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     M+ L  M      P+  TY++ +   CKA  + +A DLF  M +KG    
Sbjct: 194 FCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV-- 251

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  L    +++    L+  M  + C PD  +Y  +L+G C  G++EEA +
Sbjct: 252 -PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQ 310

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLISMY 387
             +EM  K   PD +TY C ++  C+    +EA  L   M    G  P V TY+++++ Y
Sbjct: 311 LFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGY 370

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
                   A E   EM  R  A +  TY  +IDGL    +V+ A  +L+ +VNK ++   
Sbjct: 371 SRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSV 430

Query: 448 RKFDSYLMQLSVIGDLGAIHKL 469
             F+S +  L  +GD+    KL
Sbjct: 431 GTFNSVIGALCRLGDMDEAWKL 452



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 20/298 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN--KVKPNANTYNIL------- 217
           EK++    P     N++++ LCK  L   A  + K +++   V P+  TY+ +       
Sbjct: 31  EKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQ 90

Query: 218 -----GMQTLEEMIQM-GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + L EM+   G APD  TY + +D  C+   +  A ++   M+ KG     P 
Sbjct: 91  GEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGV---EPD 147

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFL 330
             T++ +I       +++E   L   ++ S    PDV TY  +++G C +G +E+A K L
Sbjct: 148 KFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKML 207

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             M  +   P++VTY+  L  LC   + D+AL L+ RM   GC P+V TY  LI      
Sbjct: 208 GVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAA 267

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
            + D A     EM    C  D  +Y  ++DG     ++EEA  L +E+  K   LP R
Sbjct: 268 HKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSC-LPDR 324



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 126/279 (45%), Gaps = 17/279 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K  P +   + LL  LCK G +D A  + +R+ +K   PN  TY  L             
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 273

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
              ++EM      PD  +YN  +D +C+   + EA  LF+ M TK      P   TY  +
Sbjct: 274 RLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCL---PDRITYTCL 330

Query: 279 IVALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +       R+EE   LL +M   +G  PDV TY  V+ G   A +  EA +F++EM  + 
Sbjct: 331 VRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN 390

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ VTY+  +  LC     D A+ +   M+     PSV T+N +I     LG+ D A+
Sbjct: 391 VAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAW 450

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +    M   G    + TY  +++G     ++E A  L E
Sbjct: 451 KLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFE 489



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 24/229 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+  + N LLD  C+ G ++ A+                      Q  +EM      PD 
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAK----------------------QLFKEMATKSCLPDR 324

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY   +  FC A  + EA  L E M+T       P   TY+I++    +  R  E    
Sbjct: 325 ITYTCLVRGFCNASRLEEARFLLENMKTAAGI--DPDVVTYSIVVAGYSRAKRFVEAAEF 382

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           +  MI     P+  TY  +++G+C AG+V+ A + L+ M NK   P + T+N  +  LC 
Sbjct: 383 IQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCR 442

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
             + DEA +L   M   G  P + TY  L+  +   G  + A+E +  M
Sbjct: 443 LGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 18/328 (5%)

Query: 162 LKQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-- 217
           LK Y E +   + +P++     L+D  CK G ++ A  +   ++  K  PN  TY+ L  
Sbjct: 168 LKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLH 227

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      +     M   G  P+  TY T I   C A  V  A  L + M    +T 
Sbjct: 228 GLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT---ATC 284

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   +Y  ++    +  R+EE   L   M    CLPD  TY  ++ G C A ++EEA 
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344

Query: 328 KFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
             LE M    G  PD+VTY+  +      K   EA      MI     P+  TY+ LI  
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDG 404

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             + G  D A E    M  +     V T+  +I  L     ++EA  LL  +   GL+  
Sbjct: 405 LCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPG 464

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
              + + L   S  G +   ++L + MR
Sbjct: 465 MVTYTTLLEGFSRTGRMEIAYELFEVMR 492



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P V T+  +++G C A ++++A    E+M  +   P+  TYN  +  LC  +   +A 
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAY 61

Query: 363 RLYGRMIE-VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMID 420
            +   M +     P + TY+ +I+ + + GE D A E   EM  R G A DV TY  ++D
Sbjct: 62  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           GL    K++ AC ++ E+  KG++
Sbjct: 122 GLCRDGKMDRACEMVREMKLKGVE 145


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 165/352 (46%), Gaps = 30/352 (8%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K +P +    +++D LCK G +D A +    ++ K +K N  TYN L            G
Sbjct: 260 KIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDG 319

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            Q L +MI     P+  T++  ID+  K   +TEA DL+  M T+G     P   TY  +
Sbjct: 320 AQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGI---EPNTITYNSL 376

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L  + R++E   ++  M++ GC PD+ TY  ++ G C A +V++  +   +M  +G 
Sbjct: 377 IYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGM 436

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D VTY+  ++  C ++    A +++  M+  G  P + TY +L+    + GE + A  
Sbjct: 437 IADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALG 496

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              +M K     D+  Y ++I G+ + +KV++A  L   + +KG+K   R   SY + LS
Sbjct: 497 ILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVK---RDIQSYNIMLS 553

Query: 459 VIGDLGAIHKLSDHMRKF-----------YNPVIARRLALNQKRVRISLREK 499
            +    ++ +     RK            YN +I   L  N     + L E+
Sbjct: 554 GLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEE 605



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E I    +P     N L+  LC    +D A  +   + +K   P+  TYNIL      
Sbjct: 358 YNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCK 417

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+   +M   G   D  TY+T I  FC++R +  A  +F+ M ++G     P 
Sbjct: 418 AKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGV---HPG 474

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TYAI++  L  N  +EE   +L  M       D+  Y  ++ GMC A KV++A+    
Sbjct: 475 IMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFC 534

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            + +KG   DI +YN  L  LC   +  EA  L+ +M E G  P   TYN LI  +    
Sbjct: 535 SLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGN 594

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +   + +   EM + G + D  T  +++D L
Sbjct: 595 DITTSVQLIEEMKRCGFSSDASTVKIVMDML 625



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           +   ++ +  P +   N L   L +    D    +CK+++ K +  +  T NI+      
Sbjct: 78  FQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCR 137

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     + ++ ++G+ P+  T+NT ++  C    V EA +L + M         P 
Sbjct: 138 RRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHV---PD 194

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T   ++  L   DR+ E   L+  M+ +GC P+  TY  +L  MC +G    A   L 
Sbjct: 195 LITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLR 254

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M ++   P +VTY   +  LC +   D+AL  +  M   G   +V TYN LI  +   G
Sbjct: 255 KMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFG 314

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             D   +   +M  R    +V T+  +ID L    K+ EA  L  E++ +G++
Sbjct: 315 RWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIE 367



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 23/305 (7%)

Query: 158 LLMILKQYTEKIKVKTQPEINA-------LNLLLDALCKCGLVDYA-ETICKRVKNKVKP 209
           LL   KQY   + +  Q E+         LN++++  C+   + +A   + K  K   +P
Sbjct: 99  LLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEP 158

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           N  T+N L             ++ ++ M+   H PD  T NT ++  C    V+EA DL 
Sbjct: 159 NTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLI 218

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M   G     P   TY  ++  + ++        LL  M +    P V TY  +++ +
Sbjct: 219 ARMMANGC---QPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNL 275

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C  G++++A  F  EM  KG   ++ TYN  +   C     D+  +L   MI     P+V
Sbjct: 276 CKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNV 335

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            T++ LI    + G+   A + ++EM  RG   +  TY  +I GL +  +++EA  +++ 
Sbjct: 336 VTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDL 395

Query: 438 VVNKG 442
           +V+KG
Sbjct: 396 MVSKG 400



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 133/288 (46%), Gaps = 16/288 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYN--ILGM------ 219
           I  K  P +   + L+D+L K G L +  +   + +   ++PN  TYN  I G+      
Sbjct: 327 ITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRL 386

Query: 220 ----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               Q ++ M+  G  PD +TYN  I+ FCKA+ V +   LF  M  +G    + T   Y
Sbjct: 387 DEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVT---Y 443

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I    Q+ ++     +   M++ G  P + TY  +L+G+C  G++EEA   L++M  
Sbjct: 444 STLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHK 503

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
                DI  YN  +  +C+    D+A  L+  +   G    +Q+YN+++S   +      
Sbjct: 504 CKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSE 563

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A   + +M + G   D  TY  +I      + +  +  L+EE+   G 
Sbjct: 564 ADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGF 611



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 3/216 (1%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T  IMI    +  ++   FS +G +   G  P+  T+  +L G+CL G+V EA + ++ M
Sbjct: 127 TLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCM 186

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
               + PD++T N  +  LC      EA+ L  RM+  GC P+  TY  +++   + G  
Sbjct: 187 VLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNT 246

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A +   +M+ R     V TY ++ID L    ++++A     E+  KG+K     ++S 
Sbjct: 247 ASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSL 306

Query: 454 LMQLSVIG--DLGAIHKLSDHMRKFYNPVIARRLAL 487
           +      G  D GA   L D + +   P +    AL
Sbjct: 307 IGSFCSFGRWDDGA-QLLRDMITRKITPNVVTFSAL 341



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 10/266 (3%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G A D +T N  I+ FC+ R +  A   F  M         P   T+  ++  L
Sbjct: 114 KQMELKGIAYDLYTLNIMINCFCRRRKLGFA---FSAMGKIFKLGYEPNTVTFNTLLNGL 170

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               R+ E   L+  M+ S  +PD+ T   ++ G+CL  +V EA   +  M   G  P+ 
Sbjct: 171 CLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQ 230

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            TY   L  +C + N   AL L  +M      P V TY ++I    + G  D A   + E
Sbjct: 231 FTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSE 290

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   +V TY  +I       + ++   LL +++ + +      F + +  L   G 
Sbjct: 291 METKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGK 350

Query: 463 LGAIHKLSDHMRKFYNPVIARRLALN 488
           L          +  YN +I R +  N
Sbjct: 351 L-------TEAKDLYNEMITRGIEPN 369



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 25/195 (12%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
           L++  K + E +     P I    +LLD LC  G ++ A                    L
Sbjct: 456 LIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEA--------------------L 495

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G+  L++M +     D   YN  I   C A  V +A  LF  + +KG        ++Y I
Sbjct: 496 GI--LDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKG---VKRDIQSYNI 550

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           M+  L +   + E  +L   M   G  PD  TY  ++        +  + + +EEM   G
Sbjct: 551 MLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCG 610

Query: 338 YPPDIVTYNCFLKVL 352
           +  D  T    + +L
Sbjct: 611 FSSDASTVKIVMDML 625


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 177/424 (41%), Gaps = 69/424 (16%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           ME AL+ L  P  +  +V  + R Q   ++ FRFF+W   + ++    + +NL+ID+L+ 
Sbjct: 51  MEDALEKLA-PFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDMLA- 107

Query: 128 TKYKAKQFRLVCSMLDYMKRNN-------------------------------------- 149
              K   F     +L+ +K +N                                      
Sbjct: 108 ---KDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKP 164

Query: 150 ---------KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
                     V V  +V L+ L  Y + +K+   P      +LL+ LCK G  D A  + 
Sbjct: 165 DVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMF 224

Query: 201 KRVKNK-VKPNANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
             +  K + PN   Y I+  G+          + L  M   G  PD+ T N  +D FCK 
Sbjct: 225 DEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKL 284

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             + EA  L +    +G  +     K Y+ +I  L +  R +E       M  +G  PDV
Sbjct: 285 GQIDEAFALLQLFEKEGYVLG---IKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDV 341

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
             Y  ++ G C  G V+ A   L +M  +G  PD   YN  +K  CD    D+A  L   
Sbjct: 342 VLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLE 401

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           + +  C+P+  TY +LI      G  D A + +++M+  GC+  + T+  +IDGL    +
Sbjct: 402 ISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGE 461

Query: 428 VEEA 431
           +EEA
Sbjct: 462 LEEA 465



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 66/304 (21%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
            K   +P++    +L+   C+ G+VDYA                      +  L +M Q 
Sbjct: 333 FKAGIEPDVVLYTILIRGFCEVGMVDYA----------------------LNMLNDMTQR 370

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G +PD + YN  I  FC   ++ +A  L +   +K      PT+ TY I+I  + +N  +
Sbjct: 371 GLSPDTYCYNALIKGFCDVGLLDKARSL-QLEISKNDCF--PTSCTYTILICGMCRNGLL 427

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E   +   M N GC P + T+  +++G+C AG++EEA     +M     P   +  +  
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQG 487

Query: 349 LKVLCDNKNG-------DEALRLYGRMIEVGCWPSVQTYNMLISM--------------- 386
              + D  NG       ++A R+  +M++ GC PS   Y  L++                
Sbjct: 488 ADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWL 547

Query: 387 -------------------YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
                              +FE GE + A     EM+ +    ++  Y + + GL    +
Sbjct: 548 KYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARR 607

Query: 428 VEEA 431
            EEA
Sbjct: 608 SEEA 611



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 68/269 (25%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANT 213
           VD  L +L   T++      P+    N L+   C  GL+D A ++   + KN   P + T
Sbjct: 357 VDYALNMLNDMTQR---GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413

Query: 214 YNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE--- 258
           Y IL  GM          Q   +M  +G +P   T+N  ID  CKA  + EA  LF    
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473

Query: 259 -------FMR-TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                  F+R ++G+     TA  +        + DR E+ F +L  M+ +GC P  + Y
Sbjct: 474 IGKNPSLFLRLSQGADRVMDTANGFH-------RVDREEDAFRVLDQMVKNGCTPSSAVY 526

Query: 311 KEVLEGMCLAGK----------------------------------VEEAYKFLEEMGNK 336
           K ++   C  GK                                  +E+A + L EM  K
Sbjct: 527 KCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFK 586

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
               +I  Y  +L  LC  +  +EAL+++
Sbjct: 587 LNNFEIAPYTIWLIGLCQARRSEEALKIF 615


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 24/322 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P +   N ++   C+   VD A    ++ V     P+  TY  L            G++ 
Sbjct: 142 PTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLEL 201

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L E+ + G  PD  TY+T ID  CKA  + +A D+FE M        +PTA TY  +I  
Sbjct: 202 LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS------CAPTAITYNSLIGG 255

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   M+E   LLG M++  C PDV TY  ++   C  G++++AY+  ++M      PD
Sbjct: 256 YCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 315

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VT+   +  LC     ++AL L   +   GC P++ TYN ++  Y +  +   A E   
Sbjct: 316 VVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVA 375

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +   RG   +  TY +++ G     + ++A   L+++ ++G   P     + +   ++I 
Sbjct: 376 DFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP-----TSVAMYAIIL 430

Query: 462 DLGAIHKLSDHMRKFYNPVIAR 483
           D       +D   +FY  +I R
Sbjct: 431 DALCRDGRTDDAVQFYEEMIQR 452



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 134/272 (49%), Gaps = 18/272 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N+++  LC+ G + +A  + +++ +   P+  TY  L             +Q L+EM+  
Sbjct: 9   NVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSA 68

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            H PDN T    + + C    V +A +L E M  +G    +  A TY+ ++  L + +R+
Sbjct: 69  RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRG---MAANAITYSALVDGLCKCERL 125

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E  +L+  M   GC P V TY  ++ G C A +V+EA+ F+E+M  +G  PDI+TY   
Sbjct: 126 DEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTAL 185

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C +++    L L G +   G  P + TY+ +I    + G    A + + EM    C
Sbjct: 186 IGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---C 242

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           A    TY  +I G      ++EA  LL ++V+
Sbjct: 243 APTAITYNSLIGGYCRAGDMDEAIRLLGKMVD 274



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 133/282 (47%), Gaps = 19/282 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P+I   + ++D LCK G +  A  I + +     P A TYN L             ++ L
Sbjct: 212 PDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRAGDMDEAIRLL 269

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            +M+    APD  TY T +  FCK   + +A +LF+ M    +   SP   T+  ++  L
Sbjct: 270 GKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMV---ANKLSPDVVTFTSLVDGL 326

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               RME+   LL  +   GC P + TY  V++G C A +V +A + + +  ++G+ P+ 
Sbjct: 327 CGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNT 386

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETW 400
           VTYN  +   C     D+AL+   ++   G  C  SV  Y +++      G  D A + +
Sbjct: 387 VTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFY 446

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            EM +RG      T+  ++  L    + ++A  LLEE++  G
Sbjct: 447 EEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYG 488



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 18/247 (7%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------G 218
           K  P++     L+ A CK G +D A E   + V NK+ P+  T+  L             
Sbjct: 276 KCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 335

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++ LEE+ + G  P  +TYN  +D +CKA  V +A +L    R++G     P   TY I+
Sbjct: 336 LELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFV---PNTVTYNIL 392

Query: 279 IVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +    +  R ++    L  + + G  C   V+ Y  +L+ +C  G+ ++A +F EEM  +
Sbjct: 393 VAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQR 452

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           GY P   T+   +  LC      +A  L   MI+ G  P   T + ++S Y   G    A
Sbjct: 453 GYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKA 512

Query: 397 FETWHEM 403
            E   E+
Sbjct: 513 DELASEL 519



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 4/212 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P    +N  I   C+A  +  A  ++  M    +    P   TY  ++  L +  R+ + 
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQM----NDAHPPDFLTYTKLVHGLSKARRLRDA 58

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +L  M+++  +PD +T   V++ +CL  +V++A + +EEM ++G   + +TY+  +  
Sbjct: 59  VQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 118

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC  +  DEA+ L   M E GC P+V TYN +I+ +      D A     +M   GC  D
Sbjct: 119 LCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPD 178

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + TY  +I G      V     LL EV  +G 
Sbjct: 179 IITYTALIGGFCKSRDVGRGLELLGEVTRRGF 210



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 37/174 (21%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSML-DYMKRNNKVFVPVDVLLMILK------------- 163
           YN ++D       KA Q R    ++ D+  R    FVP  V   IL              
Sbjct: 354 YNCVVDGYC----KANQVRKAEELVADFRSRG---FVPNTVTYNILVAGCCRAGRTDQAL 406

Query: 164 QYTEKIKVKTQP---EINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-- 217
           QY +++  +  P    +    ++LDALC+ G  D A    +  ++    P A T+  +  
Sbjct: 407 QYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVF 466

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
                       + LEEMI+ GH P   T +  +  +C+A M+ +A +L   +R
Sbjct: 467 ALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 137/290 (47%), Gaps = 25/290 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------GM-----QT 221
           P   A   L+  LC     D A E      +    P+  TYN++       GM       
Sbjct: 356 PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDL 415

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++MI+ GH PD  TYNT +D  CK+  V EA  LF  M   G T   P  +++  +I+ 
Sbjct: 416 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCT---PNRRSHNTIILG 472

Query: 282 LVQNDR---------MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           L Q  +         ++E F LL  M + G +PDV TY  ++ G+C   +V++A   LE+
Sbjct: 473 LCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLED 532

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   P +VT N  +  LC      EA  +   M+  G  P V TYN L+  +   G+
Sbjct: 533 MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQ 592

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            + A E   +M  RG A +V TY  ++ GL   +++ EAC +  ++ + G
Sbjct: 593 TERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 642



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 143/345 (41%), Gaps = 52/345 (15%)

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
           P+ YN+MID       K       C ++  M  +  V                       
Sbjct: 393 PVTYNVMID----ASCKRGMLEEACDLIKKMIEDGHV----------------------- 425

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN--ILGM------------ 219
           P++   N ++D LCK   V+ A  +   ++     PN  ++N  ILG+            
Sbjct: 426 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQR 485

Query: 220 -------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  + L+ M   GH PD  TY+T I   C    V +A  L E M  +      PT 
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC---KPTV 542

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T   +I  L +  R++E   +L  M++SG  PDV TY  ++ G C AG+ E A + L +
Sbjct: 543 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSD 602

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +G  P++VTY   +  LC      EA  ++ +M   GC P++ TY  LI  +   G+
Sbjct: 603 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQ 662

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            DG  + + EM   G + D   Y  +   L    +   A  +L E
Sbjct: 663 VDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 707



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 134/289 (46%), Gaps = 25/289 (8%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
           + +P +  LN+LL+  C  G VD A  +                      L  M     A
Sbjct: 207 RREPCLVTLNVLLEGFCSRGQVDKAREL----------------------LRAMPDEECA 244

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLF---EFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           PD  +Y T +D  CKA  V EA  LF   E   +  S+ S P+ + Y I+I+ L QNDR+
Sbjct: 245 PDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRI 304

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E   +   M      PD  +Y  +++G+  AGK+ +A    +++ + G  P  V Y   
Sbjct: 305 DEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSL 364

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC   + D+A  L+  M   GC PS  TYN++I    + G  + A +   +M + G 
Sbjct: 365 IHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGH 424

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             DV TY  ++DGL   S+VEEA  L  E+   G     R  ++ ++ L
Sbjct: 425 VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGL 473



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 29/304 (9%)

Query: 163 KQYTEKIKVKTQ--------PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +Q TE +K   Q        P+      +L  LCK G +D AE +   ++++ + P   T
Sbjct: 57  RQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFAT 116

Query: 214 YNILG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
            + L         M+   +++++    ++  YN  +   CKA  V +A +L   M  K  
Sbjct: 117 SSFLAHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRI 176

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
            +++ +  +   ++V L+ + R++E   +        CL    T   +LEG C  G+V++
Sbjct: 177 PLAAGSLDS---VLVGLMDSGRIDEALQVYRENRREPCL---VTLNVLLEGFCSRGQVDK 230

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG------RMIEVGCWPSVQT 379
           A + L  M ++   PD V+Y   L  LC     +EA+RL+G              PS++ 
Sbjct: 231 ARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRG 290

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN++I    +    D A + + +M++R  + D  +Y ++IDGL    K+ +A  L ++++
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 440 NKGL 443
           + G+
Sbjct: 351 HSGV 354



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 209 PNANTYNIL--------GMQTLEEMIQM----GHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P  + YN+L          + +++M+Q+    G  PD+FT+ T +   CKA  + EA  +
Sbjct: 42  PYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELV 101

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            + MR++   +  P   T + +   L     ME  F LL  M     + + S Y  V+  
Sbjct: 102 MDEMRSR---MIPPYFATSSFLAHELCLRGSMERAFQLLEIMP----VANSSAYNIVVVA 154

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C A +V++A +    M  K  P    + +  L  L D+   DEAL++Y    E    P 
Sbjct: 155 LCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVY---RENRREPC 211

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           + T N+L+  +   G+ D A E    M    CA D  +YC ++DGL    +VEEA  L 
Sbjct: 212 LVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLF 270



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 18/179 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +     L+  LCK   +  A  +  ++K+    PN  TY  L            G++ 
Sbjct: 610 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 669

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--AKTYAIMI 279
             EM+  G +PD+  Y T     CK+     +A   E +R    ++ S     + Y   +
Sbjct: 670 FGEMVCAGISPDHVVYGTLAAELCKS---GRSARALEILREGRESLRSEAWGDEVYRFAV 726

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             L++  +ME     +  M+  G LP       ++ G+C +G+  EA   LEE+ +  Y
Sbjct: 727 DGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAY 785


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 177/424 (41%), Gaps = 69/424 (16%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           ME AL+ L  P  +  +V  + R Q   ++ FRFF+W   + ++    + +NL+ID+L+ 
Sbjct: 51  MEDALEKLA-PFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDMLA- 107

Query: 128 TKYKAKQFRLVCSMLDYMKRNN-------------------------------------- 149
              K   F     +L+ +K +N                                      
Sbjct: 108 ---KDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKP 164

Query: 150 ---------KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
                     V V  +V L+ L  Y + +K+   P      +LL+ LCK G  D A  + 
Sbjct: 165 DVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMF 224

Query: 201 KRVKNK-VKPNANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
             +  K + PN   Y I+  G+          + L  M   G  PD+ T N  +D FCK 
Sbjct: 225 DEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKL 284

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             + EA  L +    +G  +     K Y+ +I  L +  R +E       M  +G  PDV
Sbjct: 285 GQIDEAFALLQLFEKEGYVLG---IKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDV 341

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
             Y  ++ G C  G V+ A   L +M  +G  PD   YN  +K  CD    D+A  L   
Sbjct: 342 VLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLE 401

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           + +  C+P+  TY +LI      G  D A + +++M+  GC+  + T+  +IDGL    +
Sbjct: 402 ISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGE 461

Query: 428 VEEA 431
           +EEA
Sbjct: 462 LEEA 465



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 38/286 (13%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K   +P++    +L+   C+ G+VDYA                      +  L +M Q G
Sbjct: 334 KAGIEPDVVLYTILIRGFCEVGMVDYA----------------------LNMLNDMTQRG 371

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +PD + YN  I  FC   ++ +A  L +   +K      PT+ TY I+I  + +N  ++
Sbjct: 372 LSPDTYCYNALIKGFCDVGLLDKARSL-QLEISKNDCF--PTSCTYTILICGMCRNGLLD 428

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP--------- 340
           E   +   M N GC P + T+  +++G+C AG++EEA     +M     P          
Sbjct: 429 EARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGA 488

Query: 341 ----DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
               D  +    ++ LC++    +A +L  ++ + G  P + TYN+LI+ + +    +GA
Sbjct: 489 DRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGA 548

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           F+ + E+  +G + D  TY  +IDG     + E+A  +L+++V  G
Sbjct: 549 FKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNG 594



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 26/269 (9%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANT 213
           VD  L +L   T++      P+    N L+   C  GL+D A ++   + KN   P + T
Sbjct: 357 VDYALNMLNDMTQR---GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413

Query: 214 YNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE--- 258
           Y IL  GM          Q   +M  +G +P   T+N  ID  CKA  + EA  LF    
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473

Query: 259 -------FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
                  F+R            +   M+  L ++  + + + LL  + +SG +PD+ TY 
Sbjct: 474 IGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYN 533

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++ G C A  +  A+K   E+  KG+ PD VTY   +         ++A R+  +M++ 
Sbjct: 534 VLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKN 593

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETW 400
           GC PS   Y  L++     G+   AF  W
Sbjct: 594 GCTPSSAVYKCLMTWSCRKGKLSVAFSLW 622



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 63/251 (25%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN------ANTYNILGMQTLEEMIQM 228
           P I   N L+D LCK G ++ A  +  +++    P+           ++   +L+ M++ 
Sbjct: 444 PSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVER 503

Query: 229 --------------------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                               G  PD  TYN  I+ FCKA+ +  A  LF  ++ KG    
Sbjct: 504 LCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGH--- 560

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV----- 323
           SP + TY  +I    + DR E+ F +L  M+ +GC P  + YK ++   C  GK+     
Sbjct: 561 SPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFS 620

Query: 324 -----------------------------EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
                                        E+A + L EM  K    +I  Y  +L  LC 
Sbjct: 621 LWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQ 680

Query: 355 NKNGDEALRLY 365
            +  +EAL+++
Sbjct: 681 ARRSEEALKIF 691


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 143/293 (48%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM 219
           K Y E +     P++  LN  +D + K G ++    + + +K + + P+  +Y+IL  G+
Sbjct: 537 KIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGL 596

Query: 220 ----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     +   EM + G   D   YN  ID FCK+  V +A  L E M+TKG     
Sbjct: 597 VKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGL---Q 653

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     +     +V  Y  +++G    G+++EAY  
Sbjct: 654 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLI 713

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LEE+  KG  P+  T+NC L  L   +  DEAL  +  M  + C P+  TY+++++   +
Sbjct: 714 LEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCK 773

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G   +  TY  MI GL     V EA  L E   + G
Sbjct: 774 VRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSG 826



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 186/436 (42%), Gaps = 71/436 (16%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E AL++       + VVGV++R + + ++A  +F W   +    H P AYN ++ +++ 
Sbjct: 86  LEDALNTFDEMPQPELVVGVIRRLK-DVRVALHYFRWVERKTKQLHSPEAYNALLMLMAR 144

Query: 128 TK-------------------------------YKAKQFRLVCSMLDYMKRNNKVFVP-- 154
           T+                                K+++ R    +++ M++    F P  
Sbjct: 145 TRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFK--FRPAY 202

Query: 155 ---------------VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
                           D +L +L+Q  E   +  +  ++    L+    + G VD A ++
Sbjct: 203 SAYTTLIGALSAAHEADPMLTLLRQMQE---IGYEVTVHLFTTLICVFAREGRVDAALSL 259

Query: 200 CKRVK-NKVKPNANTYNI------------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              +K N    +   YN+            +  +   E+   G  PD+ T+ + I   CK
Sbjct: 260 LDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCK 319

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           A  V EA +LFE +    S  S P    Y  MI+      +  E +SLL      GC+P 
Sbjct: 320 AERVDEAVELFEEL---DSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPS 376

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  Y  +L  +   GKVEEA + LE M      P++ +YN  + +LC     + AL++  
Sbjct: 377 VIAYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQD 435

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M E G +P++ T N++I    +    D A   +  +D + C  D  T+C +IDGL    
Sbjct: 436 SMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHG 495

Query: 427 KVEEACFLLEEVVNKG 442
           KV +A  L E++++ G
Sbjct: 496 KVNDAYMLYEKMLDSG 511



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 15/312 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + A N +L  L + G V+ A  I + +K    PN  +YNIL             ++  
Sbjct: 375 PSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQ 434

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M + G  P+  T N  ID  CKA+ + EA  +F  +  K   + +P + T+  +I  L
Sbjct: 435 DSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHK---VCTPDSVTFCSLIDGL 491

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++ ++ + + L   M++SG  P+   Y  ++      G+ E+ +K  +EM ++G  PD+
Sbjct: 492 GRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDL 551

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +  N ++  +      ++   L+  +   G  P V++Y++LI    + G     ++ ++E
Sbjct: 552 MLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYE 611

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M ++G   D   Y ++IDG     KV +A  LLEE+  KGL+     + S +  L+ I  
Sbjct: 612 MKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDR 671

Query: 463 LGAIHKLSDHMR 474
           L   + L +  +
Sbjct: 672 LDEAYMLFEEAK 683



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 152/327 (46%), Gaps = 17/327 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-----GMQ 220
           E +K+   P + + N+L+D LCK G ++ A  +   +K   + PN  T NI+       Q
Sbjct: 401 EAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQ 460

Query: 221 TLEE----MIQMGH---APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
            L+E     + + H    PD+ T+ + ID   +   V +A  L+E M   G T   P A 
Sbjct: 461 RLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQT---PNAV 517

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  +I    +  R E+   +   M++ GC PD+      ++ +  AG++E+     EE+
Sbjct: 518 VYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEI 577

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PD+ +Y+  +  L       +  +L+  M E G     + YN++I  + + G+ 
Sbjct: 578 KAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKV 637

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A++   EM  +G    V TY  +IDGL    +++EA  L EE  +K + L    + S 
Sbjct: 638 NKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSL 697

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +     +G +  A   L + M+K   P
Sbjct: 698 IDGFGKVGRIDEAYLILEELMQKGLTP 724



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 122/289 (42%), Gaps = 35/289 (12%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR------------TKGSTI 267
           Q LEEM   G  P N T    + +F K+R + EA  + E MR            T    +
Sbjct: 153 QILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGAL 212

Query: 268 SSP--------------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           S+                     T   +  +I    +  R++   SLL  M ++    D+
Sbjct: 213 SAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADL 272

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
             Y   ++     GKV+ A+KF  E+ ++G  PD VT+   + VLC  +  DEA+ L+  
Sbjct: 273 VLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEE 332

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           +      P V  YN +I  Y  +G+ + A+       ++GC   V  Y  ++  L    K
Sbjct: 333 LDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGK 392

Query: 428 VEEACFLLEEVVNKGLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           VEEA  +LE +  K    P    ++  +  L   G+L A  K+ D M++
Sbjct: 393 VEEALRILEAM--KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKE 439


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 158/341 (46%), Gaps = 26/341 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E   V   P++    +L+D+ CK GL++ A+ + + +++    P   TY  L      
Sbjct: 311 FQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 370

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTIS-- 268
                        M+  G  P++ TY   +D  CKA  +++A +++ + + T  S  S  
Sbjct: 371 AKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDF 430

Query: 269 ----------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
                     +P   TY  ++  L +  +++    LL  M++SGC P+   Y  +++G C
Sbjct: 431 YFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFC 490

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AGK++ A +   +M   GY P + TY   +  +  +   D A+++  +M++  C P+V 
Sbjct: 491 KAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVV 550

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I     +GE + A +    M+++GC+ +V TY  +IDGL    K++ +  L  ++
Sbjct: 551 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 610

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             KG    Y  +   +  L   G L     L   M++ Y P
Sbjct: 611 SRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWP 651



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 25/248 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     L+D LCK   VD+A                       + L+ M+  G  P++
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAH----------------------ELLDAMLSSGCEPNH 479

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  ID FCKA  +  A ++F  M   G     P+  TY  +I  + ++ R++    +
Sbjct: 480 IVYDALIDGFCKAGKIDSAQEVFLQMTKCGYL---PSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M+   C P+V TY  +++G+C  G+ E+A K L  M  KG  P++VTY   +  L  
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               D +L L+ +M   GC P+  TY +LI+     G  D A     EM +    + +  
Sbjct: 597 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQG 656

Query: 415 YCVMIDGL 422
           Y   I G 
Sbjct: 657 YRCAIQGF 664



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 26/255 (10%)

Query: 200 CKRVKNKV-----KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKR+ N +      PN + +N L              + L  M   G  P    YN  I 
Sbjct: 161 CKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIG 220

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C         ++  A  ++  M      ++      +A  +  + + D+    F L+ 
Sbjct: 221 SICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKA---FQLIK 277

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+  G +PD STY +V+  +C A KVE+A+   +EM   G  PD+ TY   +   C   
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A  L+  M  VGC P+V TY  LI  Y +  +   A + +H M   GC  +  TY 
Sbjct: 338 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397

Query: 417 VMIDGLFDCSKVEEA 431
            ++DGL     + +A
Sbjct: 398 ALVDGLCKAGNISKA 412



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 19/248 (7%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C      +A  L + M  KG     P   TY+ +I  L    ++E+ F L   M   G 
Sbjct: 263 LCGVGKFDKAFQLIKEMMRKGFV---PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 319

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PDV TY  +++  C AG +E+A    EEM + G  P +VTY   +      K   +A  
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 379

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----------------DKRG 407
           ++ RM++ GC P+  TY  L+    + G    AFE + ++                D+  
Sbjct: 380 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 439

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
            A +V TY  ++DGL    KV+ A  LL+ +++ G +  +  +D+ +      G + +  
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499

Query: 468 KLSDHMRK 475
           ++   M K
Sbjct: 500 EVFLQMTK 507



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 56/325 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A E   +  K    P+ +TY  L             M+
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++    P+  TY   ID  C+     +A  L   M  KG    SP   TY  +I 
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGC---SPNVVTYTALID 592

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  +++    L   M   GC P+  TY+ ++  +C AG +++A   L EM    +P 
Sbjct: 593 GLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK 652

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG--------- 391
            +  Y C ++    +K+   +L +   M   G  P    Y MLI  + + G         
Sbjct: 653 YLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELH 710

Query: 392 ----------------------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
                                       + + AF  + EM +RG   ++  +  +I GL 
Sbjct: 711 KEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLV 770

Query: 424 DCSKVEEACFLLEEVVNK-GLKLPY 447
           +  K +EA  L   + ++ GL L Y
Sbjct: 771 EVKKWDEALQLCYGICHEVGLLLSY 795



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 22/281 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEE------------MIQMG 229
           ++  L +    D A +   R++ N   PN  TY  L    L++            M+  G
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 172

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+   +N+ + ++C  +    A  L   M T G     P    Y I I ++   +++ 
Sbjct: 173 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC---PPGYVVYNIFIGSICGQEKLP 229

Query: 290 E------CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
                     + G M+ + C+ +          +C  GK ++A++ ++EM  KG+ PD  
Sbjct: 230 SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTS 289

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +  LC     ++A  L+  M  VG  P V TY +LI  + + G  + A   + EM
Sbjct: 290 TYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 349

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              GC+  V TY  +I       +V +A  +   +V+ G +
Sbjct: 350 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCR 390



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 103/278 (37%), Gaps = 47/278 (16%)

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +P+  TYN L            G +  +EM + G   D FT        CK     +A D
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALD 96

Query: 256 LFE-----------------------------FMRTKGSTISSPTAKTYAIMIVALVQND 286
           + E                             F+         P   TY  ++   ++  
Sbjct: 97  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 156

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++  C  ++  M+  GC P+ S +  ++   C       AYK L  M   G PP  V YN
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 347 CFLKVLCDNKN------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            F+  +C  +        D A ++YG M+   C  +             +G+ D AF+  
Sbjct: 217 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLI 276

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            EM ++G   D  TY  +I  L   +KVE+A  L +E+
Sbjct: 277 KEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 314



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 121/292 (41%), Gaps = 53/292 (18%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D M ++ ++ + + VL  +LK           P +     ++D LC+ G  + A  +
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLKD-------SCTPNVVTYTAMIDGLCRIGESEKALKL 571

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K   PN  TY  L             +    +M + G +P+  TY   I+  C 
Sbjct: 572 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 631

Query: 247 ARMVTEAADLFEFMRT-----------------KGSTISS-------------PTAKTYA 276
           A ++ +A  L   M+                    S I+S             P A  Y 
Sbjct: 632 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYG 691

Query: 277 IMIVALVQNDRMEECFSLLGHM--INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           ++I    +  R+E    L   M  + S    D   Y  +++ +CLA +VEEA++   EM 
Sbjct: 692 MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRL-YGRMIEVGCWPSVQTYNMLIS 385
            +G+ P++  + C +K L + K  DEAL+L YG   EVG   S  T   L +
Sbjct: 752 RRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEVGLLLSYTTQIFLFT 803



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 38/257 (14%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLV-------CS--------MLDYMKRNNKVF 152
           +D+     + Y  MID L       K  +L+       CS        ++D + +  K+ 
Sbjct: 542 KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKID 601

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP--- 209
           + +D+       +T+  +    P      +L++ LC  GL+D A  +   +K    P   
Sbjct: 602 LSLDL-------FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYL 654

Query: 210 --------NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
                     +   I  +  LEEM   G  P    Y   ID F KA  +  A +L + M 
Sbjct: 655 QGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMM 714

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
              S++ +     YA +I AL    ++EE F L   M   G +P++S +  +++G+    
Sbjct: 715 EVPSSVKTDN-DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVK 773

Query: 322 KVEEA----YKFLEEMG 334
           K +EA    Y    E+G
Sbjct: 774 KWDEALQLCYGICHEVG 790



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G  P   TY  +++ +  AG+V+  ++  +EM   G+  D  T  CF   LC      +A
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 362 LRLYGR----MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
           L +  R    +  V C         +IS   E    D A    H M    C  +V TY  
Sbjct: 95  LDMIEREDFKLDTVLC-------THMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRT 147

Query: 418 MIDGLF 423
           ++ G  
Sbjct: 148 LLSGFL 153


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 198/445 (44%), Gaps = 76/445 (17%)

Query: 67  NMEKALDSLG----VPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNL 120
           +ME  LD       + L+ + V  VL+  +  EK  IA+ FF W+  Q  Y H    Y  
Sbjct: 98  SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 157

Query: 121 MIDILSSTKYKAKQFRLVCSML-------------DYMKRNNKVFVPVDVLLMILKQYTE 167
           ++D+L+  K    + R +CS +               +K   K+ + V+ LL + ++  E
Sbjct: 158 LVDVLALAK-DVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGM-VEELLWVWRKMKE 215

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--------- 217
                 +P +   N L++ L     VD AE + + +++ ++KP+  TYN +         
Sbjct: 216 N---GIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQ 272

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               ++ L  M   G   D  TY T I         +    L++ M  KG  +  P A  
Sbjct: 273 TQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQV-PPHA-- 329

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           ++++I  L +  ++ E +++  +MI  G  P+V+ Y  +++G    G VE+A + L  M 
Sbjct: 330 FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMI 389

Query: 335 NKGYPPDIVTYNCFLKVLCDNK--------------NG---------------------D 359
           ++G+ PD+VTY+  +  LC N               NG                     D
Sbjct: 390 DEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVD 449

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRGCAQDVDTYCVM 418
           EA RL+  M E GC      YN LI  + + G+ D A   +  M ++ GC Q V TY ++
Sbjct: 450 EAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTIL 509

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGL 443
           I G+F   + EEA  L + +++KG+
Sbjct: 510 ISGMFKEHRNEEALKLWDMMIDKGI 534



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 22/244 (9%)

Query: 174 QPEINALNLLLDALCKCGLV----DYAETICKRVKNKVKPNANTYNIL------------ 217
            P++   +++++ LCK G V    DY +T C+   N +  N+  Y+ L            
Sbjct: 394 NPDVVTYSVVVNGLCKNGRVEEAMDYFQT-CRF--NGLAINSMFYSSLIDGLGKAGRVDE 450

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +  EEM + G   D++ YN  ID F K   V EA  LF+ M  +       T  TY I
Sbjct: 451 AERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGC--DQTVYTYTI 508

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  + +  R EE   L   MI+ G  P  +  + +  G+CL+GKV  A K L+E+   G
Sbjct: 509 LISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPMG 568

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              D    +  +  LC      EA +L   + E G     +   ++I+   ++G+ D A 
Sbjct: 569 VILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAM 627

Query: 398 ETWH 401
           +  H
Sbjct: 628 KLMH 631


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKC-GLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           P + + N +LD++ +C   V +AE + +  + + V  N  +YNIL            G++
Sbjct: 165 PGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLR 224

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM +    P+  TYNT I  +CK + + EA   F+ +R+ G     P   TY ++I 
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEA---FKLLRSMGLEGLEPNLLTYNMVIN 281

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  R+EE   +L  M   G  PD  TY  ++ G C  G   +A     EM   G PP
Sbjct: 282 GLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPP 341

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTY   +  +C   N + A+  + +M   G  P+  TY  LI+ + + G  D A+  W
Sbjct: 342 DVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIW 401

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM + G    + TY  +++G     ++EEA  LL  +  KGL
Sbjct: 402 DEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGL 444



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 153/337 (45%), Gaps = 16/337 (4%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPN 210
           F     L M L+ + E  + +  P +   N ++ A CK   +D A  + + +    ++PN
Sbjct: 213 FCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPN 272

Query: 211 ANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             TYN++  G+            L EM + G APD  TYNT ++ +CK     +A  L  
Sbjct: 273 LLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHS 332

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M   G     P   TY  +I  + +   +         M   G  P+  TY  ++ G  
Sbjct: 333 EMLRNGL---PPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             G ++EAY+  +EM   G+PP IVTYN  L   C +   +EA+ L   M   G  P V 
Sbjct: 390 QKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVV 449

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           +Y+ +I+ +    E D AF+   EM ++G + D  TY  +I GL +  ++ EAC L +E+
Sbjct: 450 SYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEM 509

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +NK L      + S +      GDL     L D M K
Sbjct: 510 LNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIK 546



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 17/286 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P +   N++++ LC+ G ++    +   +  K   P+  TYN L             + 
Sbjct: 270 EPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALV 329

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM++ G  PD  TY + I+T CKA  +  A + F+ M  +G     P   TY  +I 
Sbjct: 330 LHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGL---RPNGVTYTSLIN 386

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              Q   M+E + +   MI SG  P + TY  +L G C++G++EEA   L  M  KG  P
Sbjct: 387 GFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSP 446

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+V+Y+  +   C  +  D A ++   M+E G  P   TY+ LI    E    + A + +
Sbjct: 447 DVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            EM  +    D  TY  +I+G      + EA  L +E++ KG  LP
Sbjct: 507 QEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGF-LP 551



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 136/342 (39%), Gaps = 66/342 (19%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           ++E ++    P++     L++ +CK G ++ A     ++  + ++PN  TY  L      
Sbjct: 331 HSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQ 390

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------- 264
                   +  +EMI+ G  P   TYN  ++  C +  + EA  L   M  KG       
Sbjct: 391 KGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVS 450

Query: 265 -STI------------------------SSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            STI                         SP A TY+ +I  L +  R+ E   L   M+
Sbjct: 451 YSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEML 510

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
           N   LPD  TY  ++ G C  G + EA    +EM  KG+ PD VTYN  +  L       
Sbjct: 511 NKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTR 570

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLIS------------------MYFELGEPDGAFETWH 401
           EA RL  ++      P+  TY+ LI                   M   + E D  FE+  
Sbjct: 571 EAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFES-- 628

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M KR    +   Y V+I G      V +A  L +E+V+ G 
Sbjct: 629 -MIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGF 669



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 5/261 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARM-VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           G  P   +YN  +D+  + R  V  A  ++  M   G +++     +Y I+I        
Sbjct: 162 GFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLN---VFSYNILIRGFCAAGN 218

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E        M  + CLP+V TY  V+   C   +++EA+K L  MG +G  P+++TYN 
Sbjct: 219 LEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNM 278

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC     +E   +   M   G  P   TYN L++ Y ++G    A     EM + G
Sbjct: 279 VINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNG 338

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV TY  +I+ +     +  A    +++  +GL+     + S +   S  G +   +
Sbjct: 339 LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAY 398

Query: 468 KLSDHM-RKFYNPVIARRLAL 487
           ++ D M R  + P I    AL
Sbjct: 399 RIWDEMIRSGFPPTIVTYNAL 419



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 31/246 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++ + + ++   C+   +D A +   + V+  V P+A TY+ L               
Sbjct: 445 SPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACD 504

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+     PD FTY + I+ +CK   + EA +L + M  KG     P   TY ++I 
Sbjct: 505 LFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFL---PDTVTYNVLIN 561

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE---------------GMCLAGKVEE 325
            L +  R  E   LL  +     +P+  TY  ++E               G C+ G + E
Sbjct: 562 GLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNE 621

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +  E M  +   P+   YN  +   C + N  +A +LY  M++ G  P   T   L+ 
Sbjct: 622 ADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVK 681

Query: 386 MYFELG 391
             +  G
Sbjct: 682 ALYSEG 687


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 23/337 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           ++E +     P++   + L+   C  G L D  +   K +   +KP+  T+NIL      
Sbjct: 248 FSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCK 307

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G    + M++ G  P+  TYN+ +D +C  + V +A  +F  M   G    +P 
Sbjct: 308 DGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGV---NPD 364

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y+IMI    +  + +E  +L   M     +PDV TY  +++G+  +G++  A + ++
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M ++G PP+I TYN  L  LC     D+A+ L  +  + G  P + TY++LI    + G
Sbjct: 425 QMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSG 484

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + + A + + ++  +G   DV  Y +MI G        EA  LL ++ + G     + ++
Sbjct: 485 KLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYE 544

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488
             ++ L    +       +D   K    +IAR L LN
Sbjct: 545 IIILSLFKKDE-------NDMAEKLLREMIARGLPLN 574



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 148/298 (49%), Gaps = 18/298 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P++   N+L++A CK G +   +T+   + K  +KPN  TYN L               
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS 351

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M Q G  PD  +Y+  I+ FCK +   EA +LF+ M  K      P   TY+ +I 
Sbjct: 352 IFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNII---PDVVTYSSLID 408

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R+     L+  M + G  P++ TY  +L+ +C   +V++A   L +  +KG+ P
Sbjct: 409 GLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQP 468

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI TY+  +K LC +   ++A +++  ++  G    V  Y ++I  +   G  + A    
Sbjct: 469 DISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALL 528

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +M+  GC  D  TY ++I  LF   + + A  LL E++ +GL L +  +D YL +L+
Sbjct: 529 SKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLNF--YDLYLTRLA 584



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 182/412 (44%), Gaps = 36/412 (8%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR 147
            Q FQF +   F F  ++  + N+    ++Y+      S+T +         S+ + + R
Sbjct: 27  FQSFQFLKNTHFNFIPYSSSKINF----ISYSST----STTFHSNNDVDDAVSLFNRLLR 78

Query: 148 NNKV-----FVPVDVLLMILKQY------TEKIKVK-TQPEINALNLLLDALCKCGLVDY 195
            N       F  +   L+  K Y      ++K++ +  +P +   N+L++  C+ GL+ +
Sbjct: 79  RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPF 138

Query: 196 AETI-CKRVKNKVKPNANTYNILG---------MQTL---EEMIQMGHAPDNFTYNTAID 242
           A ++  K +K    P+  T+  L           Q     ++++ +G   D  +Y T I 
Sbjct: 139 AFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             CK      A DL +  R  G+ +  P    Y  +I ++ +   + E F L   M++ G
Sbjct: 199 GLCKVGETRAALDLLQ--RVDGNLVQ-PNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKG 255

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             PDV TY  ++ G C+ GK+++A     +M  +   PD+ T+N  +   C +    E  
Sbjct: 256 ISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++  M++ G  P+  TYN L+  Y  + E + A   ++ M + G   D+ +Y +MI+G 
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
               K +EA  L +E+  K +      + S +  LS  G +    +L D M 
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMH 427


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 123/263 (46%), Gaps = 24/263 (9%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           N L+  LC  G +D A                      ++  +EM  +   PD  TYNT 
Sbjct: 141 NTLVKGLCDEGKIDEA----------------------IRVRDEMESLKLIPDVVTYNTL 178

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ID   K R  TE   L E M+++G     P A T+ IM+    +  ++ E    +  M+ 
Sbjct: 179 IDGCFKWRGSTEGFRLLEEMKSRGGV--EPNAVTHNIMVKWFGKEGKINEASDAVVKMVE 236

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           SG  PD  TY  ++ G C AGK+ EA++ ++EM  KG  PDI T N  L  LC  K  +E
Sbjct: 237 SGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEE 296

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L  +  + G      TY  LI  YF+  + D A + W EM KRG    V +Y  +I 
Sbjct: 297 AYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIR 356

Query: 421 GLFDCSKVEEACFLLEEVVNKGL 443
           GL    K ++A   L E++ KGL
Sbjct: 357 GLCLSGKTDQAVDKLNELLEKGL 379



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 132/285 (46%), Gaps = 17/285 (5%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL----------- 217
           +K  P++   N L+D   K         + + +K++  V+PNA T+NI+           
Sbjct: 166 LKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKIN 225

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                + +M++ G +PD FTYNT I+ FCKA  + EA  + + M  KG     P   T  
Sbjct: 226 EASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGL---KPDICTLN 282

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            M+  L    + EE + L       G + D  TY  ++ G     + ++A K  EEM  +
Sbjct: 283 TMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKR 342

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P +V+YN  ++ LC +   D+A+     ++E G  P   + N++I  Y   G  D A
Sbjct: 343 GIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKA 402

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           F+  ++M       D+ T  +++ GL     +E+A  L    ++K
Sbjct: 403 FQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISK 447



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 136/287 (47%), Gaps = 18/287 (6%)

Query: 167 EKIKVKTQPEINAL--NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------ 217
           E++K +   E NA+  N+++    K G ++ A + + K V++ V P+  TYN +      
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCK 255

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + ++EM + G  PD  T NT + T C  +   EA +L    R +G  +   T
Sbjct: 256 AGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVT 315

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I+   +  + ++   L   M   G +P V +Y  ++ G+CL+GK ++A   L 
Sbjct: 316 ---YGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLN 372

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+  KG  PD V+ N  +   C     D+A + + +M+     P + T N+L+     + 
Sbjct: 373 ELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVD 432

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             + AF+ ++    +  + DV TY  MI  L    +++EA  L+ ++
Sbjct: 433 MLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDM 479



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 45/288 (15%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           LK + E  K    P + + N L+  LC  G  D A                      +  
Sbjct: 333 LKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQA----------------------VDK 370

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L E+++ G  PD  + N  I  +C   MV +A   F+F          P   T  I++  
Sbjct: 371 LNELLEKGLVPDEVSCNIIIHGYCWEGMVDKA---FQFHNKMVGNSFKPDIFTRNILLRG 427

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + D +E+ F L    I+     DV TY  ++  +C  G+++EA+  + +M  K + PD
Sbjct: 428 LCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPD 487

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT--------------YNMLISMY 387
             TYN  ++ L      +EA +   ++ E G   +V+T              Y+  IS  
Sbjct: 488 QYTYNAIVRALTHAGRTEEAEKFMSKLSETG--QAVKTHDTSQELDASSDIMYSQQISDL 545

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF----DCSKVEEA 431
              G+   A + + E +++G + +  TY  ++DG        SKV+ A
Sbjct: 546 CTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGFLKRRKSISKVDHA 593



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 1/140 (0%)

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           DV TY  +++G+C  GK++EA +  +EM +    PD+VTYN  +      +   E  RL 
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195

Query: 366 GRM-IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
             M    G  P+  T+N+++  + + G+ + A +   +M + G + D  TY  MI+G   
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCK 255

Query: 425 CSKVEEACFLLEEVVNKGLK 444
             K+ EA  +++E+  KGLK
Sbjct: 256 AGKLGEAFRMMDEMARKGLK 275



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 10/262 (3%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           +T++  +  A     A  LF+          S    TY  ++  L    +++E   +   
Sbjct: 103 DTSLAAYVHANQPHLAFQLFQNELIXXXXXXSIDVWTYNTLVKGLCDEGKIDEAIRVRDE 162

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNK 356
           M +   +PDV TY  +++G        E ++ LEEM ++ G  P+ VT+N  +K      
Sbjct: 163 MESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEG 222

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +EA     +M+E G  P   TYN +I+ + + G+   AF    EM ++G   D+ T  
Sbjct: 223 KINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLN 282

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK- 475
            M+  L    K EEA  L  +   +G  L    + + +M            KL + M+K 
Sbjct: 283 TMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKR 342

Query: 476 -------FYNPVIARRLALNQK 490
                   YNP+I R L L+ K
Sbjct: 343 GIVPSVVSYNPLI-RGLCLSGK 363


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 142/294 (48%), Gaps = 17/294 (5%)

Query: 164 QYTEKIKVKT-QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---- 217
           Q  +++K K   P+I   N+L+ +LC  G++D A E   + +K   KP   TY IL    
Sbjct: 147 QVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEAT 206

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    M+ L+EM+++   PD FTYN+ I   C+   V  A  +   + +KG    +
Sbjct: 207 LLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGY---A 263

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY I++  L+   + E  + L+  M+  GC  +V TY  ++  +C  GKVEE    
Sbjct: 264 PDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGL 323

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L++M  KG  PD   Y+  +  LC     D A+ +   MI  GC P +  YN +++   +
Sbjct: 324 LKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 383

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               D A   + ++ + GC+ +  +Y  M   L+       A  ++ E+++KG+
Sbjct: 384 QKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGV 437



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 18/298 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           +K   E +++  QP++   N ++  +C+ G VD A  I   + +K   P+  TYNIL   
Sbjct: 216 MKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRG 275

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G + + +M+  G   +  TY+  I + C+   V E   L + M+ KG    
Sbjct: 276 LLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGL--- 332

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P    Y  +I AL +  R++    +L  MI+ GC+PD+  Y  +L  +C   + +EA  
Sbjct: 333 KPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALS 392

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E++G  G  P+  +YN     L    +   AL +   M++ G  P   TYN LIS   
Sbjct: 393 IFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLC 452

Query: 389 ELGEPDGAFETW--HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             G  D A E     EM+   C   V +Y +++ GL   S+V +A  +L  +V+KG +
Sbjct: 453 RDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCR 510



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 9/237 (3%)

Query: 214 YNILGMQTLEEMIQMGHA------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
           + +   +T+++ IQ+ H       PD   YN  I  FC+A  +  A  + + M+ KG   
Sbjct: 100 HGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGF-- 157

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            SP   TY I+I +L     ++        ++   C P V TY  ++E   L G ++EA 
Sbjct: 158 -SPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAM 216

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           K L+EM      PD+ TYN  ++ +C     D A ++   +   G  P V TYN+L+   
Sbjct: 217 KLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGL 276

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              G+ +  +E   +M  RGC  +V TY V+I  +    KVEE   LL+++  KGLK
Sbjct: 277 LNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLK 333



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 121/269 (44%), Gaps = 25/269 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            P++ A N ++   C+   +D A  +  R+KNK                      G +PD
Sbjct: 123 HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNK----------------------GFSPD 160

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TYN  I + C   M+  A    EF          PT  TY I+I A +    ++E   
Sbjct: 161 IVTYNILIGSLCSRGMLDSA---LEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMK 217

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  M+     PD+ TY  ++ GMC  G V+ A++ +  + +KGY PD++TYN  L+ L 
Sbjct: 218 LLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLL 277

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
           +    +    L   M+  GC  +V TY++LIS     G+ +       +M K+G   D  
Sbjct: 278 NQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGY 337

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            Y  +I  L    +V+ A  +L+ +++ G
Sbjct: 338 CYDPLIAALCKEGRVDLAIEVLDVMISDG 366



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 18/219 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++L+ ++C+ G V+    + K +K K +KP+   Y+ L             ++ L+ MI 
Sbjct: 305 SVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMIS 364

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD   YNT +   CK +   EA  +FE +   G    SP A +Y  M  AL     
Sbjct: 365 DGCVPDIVNYNTILACLCKQKRADEALSIFEKL---GEVGCSPNASSYNSMFSALWSTGH 421

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL--EEMGNKGYPPDIVTY 345
                 ++  M++ G  PD  TY  ++  +C  G V+EA + L   EM +    P +V+Y
Sbjct: 422 KVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSY 481

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           N  L  LC      +A+ +   M++ GC P+  TY  LI
Sbjct: 482 NIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLI 520



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN------------ILGMQT 221
           P+I   N +L  LCK    D A +I +++      PNA++YN            +  +  
Sbjct: 369 PDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGM 428

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + EM+  G  PD  TYN+ I   C+  MV EA +L   M  + S    P+  +Y I+++ 
Sbjct: 429 ILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSE-CKPSVVSYNIVLLG 487

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           L +  R+ +   +L  M++ GC P+ +TY  ++EG+   G + +A
Sbjct: 488 LCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDA 532


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 150/341 (43%), Gaps = 26/341 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E   V   P++    +L+D+ CK GL++ A +    +++    P+  TY  L      
Sbjct: 478 FQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLK 537

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS-- 269
                        M+  G AP+  TY+  +D  CKA    +A +++  M      + S  
Sbjct: 538 TKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDF 597

Query: 270 -----------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
                      P   TY  +I  L +  ++ +   LL  M ++GC P+   Y  +++G C
Sbjct: 598 YFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFC 657

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             GK++ A +    M   GY P + TY   +  +  ++  D A+++  +M+E  C P+V 
Sbjct: 658 KVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVV 717

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I     +GE   A +    M+KRGC  +V TY  +IDGL    KV+ +  L  ++
Sbjct: 718 TYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQM 777

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           + +G    Y  +   +      G L   H L   M++ Y P
Sbjct: 778 ITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWP 818



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 34/298 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRV----------------KNKVKPNANTYNIL 217
           P     + L+D LCK G    A E   K +                 + + PN  TY  L
Sbjct: 558 PNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGAL 617

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         + L+ M   G  P++  Y+  ID FCK   +  A ++F  M   G 
Sbjct: 618 IDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGY 677

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               PT  TY  +I A+ ++ R++    +L  M+ S C P+V TY  +++G+C  G+ ++
Sbjct: 678 L---PTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQK 734

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A K L  M  +G  P++VTY   +  L  +   D +L+L+ +MI  GC P+  TY +LI+
Sbjct: 735 ALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLIN 794

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                G  D A     EM +    + V  YC ++ G     K   +  LLEE+ + G+
Sbjct: 795 HCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF--SKKFIASLGLLEELESHGM 850



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 111/256 (43%), Gaps = 26/256 (10%)

Query: 200 CKRV-----KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKR+          PN + +N L              + L  M   G  P    YN  I 
Sbjct: 328 CKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIG 387

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C         ++  A  ++E M      ++      +A  +  + + D+    F ++ 
Sbjct: 388 SICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKA---FQIIK 444

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+  G +PD STY +V+  +C A KVE+A+   +EM + G  PD+ TY   +   C   
Sbjct: 445 LMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVG 504

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A   +  M  VGC PSV TY  L+  Y +  +   A + +H M   GCA +  TY 
Sbjct: 505 LIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYS 564

Query: 417 VMIDGLFDCSKVEEAC 432
            ++DGL    + ++AC
Sbjct: 565 ALVDGLCKAGESQKAC 580



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 161/414 (38%), Gaps = 83/414 (20%)

Query: 82  DSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM 141
           D+VV  + R     ++  RFF+WA  Q  Y+H    YN + ++L                
Sbjct: 104 DAVVVAVLRSVRTPELCVRFFLWAERQVGYSHTGACYNALAEVLH--------------- 148

Query: 142 LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK 201
            D   R  +          +L++  E  +   +     LN+++   C+ G    A     
Sbjct: 149 FDDRARTTE---------RLLREIGEDDR---EVLGRLLNVIVRKCCRHGAWAKALEELG 196

Query: 202 RVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
           R+K+   +P+  TYN L            G +  +EM ++G   D FT        CK  
Sbjct: 197 RLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEG 256

Query: 249 MVTEA-------------------------ADLFE----FMRTKGSTISSPTAKTYAIMI 279
             ++A                         A LF+    F+         P   TY  ++
Sbjct: 257 RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLL 316

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
              ++  ++  C  ++  M+N GC P+ S +  ++   C A     AYK L  M   G P
Sbjct: 317 AGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCP 376

Query: 340 PDIVTYNCFLKVLCDNKNGDE---------ALRLYGRMIEVGC-WPSVQTYNMLISMYFE 389
           P  V YN F+  +C   +G+E         A ++Y  M+   C    V T N    +   
Sbjct: 377 PGYVVYNIFIGSIC---SGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCL-CG 432

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +G+ D AF+    M ++G   D  TY  +I  L +  KVE+A  L +E+ + G+
Sbjct: 433 MGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 486



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 168/438 (38%), Gaps = 91/438 (20%)

Query: 55  YEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHE 114
           Y A++D        +KA +     + T   VG    F FE +          H D+ A  
Sbjct: 563 YSALVDGLCKAGESQKACEVYAKMIGTSDNVG--SDFYFEGE----------HTDSIAPN 610

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
            + Y  +ID L     KA +      +LD M  N                         +
Sbjct: 611 VVTYGALIDGLC----KAHKVVDAQELLDVMSSNG-----------------------CE 643

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P     + L+D  CK G +D A+ +  R+ K    P  +TY  L             ++ 
Sbjct: 644 PNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKV 703

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M++    P+  TY   ID  C+     +A  L   M  +G    +P   TY  +I  
Sbjct: 704 LSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGC---NPNVVTYTSLIDG 760

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ +++    L   MI  GC P+  TY+ ++   C AG ++EA+  L EM    +P  
Sbjct: 761 LGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKY 820

Query: 342 IVTYNCFLK-----------------------------VLCDN--KNG--DEALRLYGRM 368
           +  Y   ++                             +L D+  K G  ++AL L+  M
Sbjct: 821 VQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEM 880

Query: 369 IEVGC---WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           +EV       S  TY  LI       + + AFE + E+ ++G   ++  +  +I GL   
Sbjct: 881 MEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKV 940

Query: 426 SKVEEACFLLEEVVNKGL 443
           +K  EA  L   + ++G+
Sbjct: 941 NKWNEALQLCYSMCDEGV 958



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 155/382 (40%), Gaps = 49/382 (12%)

Query: 100 RFFMWA------GHQDNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151
           R   WA      G   ++ + P    YN ++ +L++       FR+   M +     +K 
Sbjct: 184 RHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKF 243

Query: 152 FVPV------------DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
            V              D L+MI +   E  K+ T      ++ L++A     L D A + 
Sbjct: 244 TVGCFAQALCKEGRWSDALVMIER---EDFKLDTVLCTQMISGLMEA----SLFDEAISF 296

Query: 200 CKRVK-NKVKPNANTYNILGMQTLEE------------MIQMGHAPDNFTYNTAIDTFCK 246
             R++ N   PN  TY  L    L++            M+  G  P+   +N+ + ++C 
Sbjct: 297 LHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCN 356

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE------CFSLLGHMIN 300
           AR    A  L   M   G     P    Y I I ++   + +           +   M+ 
Sbjct: 357 ARDYPYAYKLLNRMAGCGC---PPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLA 413

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S C+ +          +C  GK ++A++ ++ M  KG+ PD  TY+  +  LC+    ++
Sbjct: 414 SSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEK 473

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L+  M  VG  P V TY +LI  + ++G  + A   + EM+  GC+  V TY  ++ 
Sbjct: 474 AFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLH 533

Query: 421 GLFDCSKVEEACFLLEEVVNKG 442
                 +V +A  +   +V+ G
Sbjct: 534 AYLKTKQVPQASDIFHRMVDAG 555



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 54/289 (18%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D M ++ ++    D+ + +L Q  E       P +     ++D LC+ G    A  +
Sbjct: 686 SLIDAMFKDRRL----DLAIKVLSQMLES---SCTPNVVTYTAMIDGLCRIGECQKALKL 738

Query: 200 CKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              + K    PN  TY  L             +Q   +MI  G AP+  TY   I+  C 
Sbjct: 739 LSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCA 798

Query: 247 ARMVTEAADLFEFMR--------------TKGST---ISS-------------PTAKTYA 276
           A ++ EA  L   M+               +G +   I+S               A  Y 
Sbjct: 799 AGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYG 858

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVS---TYKEVLEGMCLAGKVEEAYKFLEEM 333
           ++I +  +  R+E+   L   M+      +++   TY  +++ +CLA ++E+A++   E+
Sbjct: 859 LLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEI 918

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-WPSVQTYN 381
             KG  P++  + C +K L      +EAL+L   M + G  W S  +++
Sbjct: 919 TRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGVNWQSNNSFD 967



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           LG + + G  P  +TY  +++ +  AG+++  ++  +EM   G+  D  T  CF + LC 
Sbjct: 195 LGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCK 254

Query: 355 NKNGDEALRLYGR----MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                +AL +  R    +  V C         +IS   E    D A    H M    C  
Sbjct: 255 EGRWSDALVMIEREDFKLDTVLC-------TQMISGLMEASLFDEAISFLHRMRCNSCIP 307

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           +V TY  ++ G     ++     ++  ++N+G       F+S +       D    +KL 
Sbjct: 308 NVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLL 367

Query: 471 DHM 473
           + M
Sbjct: 368 NRM 370


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 158/341 (46%), Gaps = 26/341 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E   V   P++    +L+D+ CK GL++ A+ + + +++    P   TY  L      
Sbjct: 311 FQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 370

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTIS-- 268
                        M+  G  P++ TY   +D  CKA  +++A +++ + + T  S  S  
Sbjct: 371 AKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDF 430

Query: 269 ----------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
                     +P   TY  ++  L +  +++    LL  M++SGC P+   Y  +++G C
Sbjct: 431 YFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFC 490

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AGK++ A +   +M   GY P + TY   +  +  +   D A+++  +M++  C P+V 
Sbjct: 491 KAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVV 550

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I     +GE + A +    M+++GC+ +V TY  +IDGL    K++ +  L  ++
Sbjct: 551 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 610

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             KG    Y  +   +  L   G L     L   M++ Y P
Sbjct: 611 SRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWP 651



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 25/248 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     L+D LCK   VD+A  +                      L+ M+  G  P++
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHEL----------------------LDAMLSSGCEPNH 479

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  ID FCKA  +  A ++F  M   G     P+  TY  +I  + ++ R++    +
Sbjct: 480 IVYDALIDGFCKAGKIDSAQEVFLQMTKCGYL---PSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M+   C P+V TY  +++G+C  G+ E+A K L  M  KG  P++VTY   +  L  
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               D +L L+ +M   GC P+  TY +LI+     G  D A     EM +    + +  
Sbjct: 597 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQG 656

Query: 415 YCVMIDGL 422
           Y   I G 
Sbjct: 657 YRCAIQGF 664



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 26/255 (10%)

Query: 200 CKRVKNKV-----KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKR+ N +      PN + +N L              + L  M   G  P    YN  I 
Sbjct: 161 CKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIG 220

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C         ++  A  ++  M      ++      +A  +  + + D+    F L+ 
Sbjct: 221 SICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKA---FQLIK 277

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+  G +PD STY +V+  +C A KVE+A+   +EM   G  PD+ TY   +   C   
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A  L+  M  VGC P+V TY  LI  Y +  +   A + +H M   GC  +  TY 
Sbjct: 338 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397

Query: 417 VMIDGLFDCSKVEEA 431
            ++DGL     + +A
Sbjct: 398 ALVDGLCKAGNISKA 412



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 19/248 (7%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C      +A  L + M  KG     P   TY+ +I  L    ++E+ F L   M   G 
Sbjct: 263 LCGVGKFDKAFQLIKEMMRKGFV---PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 319

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PDV TY  +++  C AG +E+A    EEM + G  P +VTY   +      K   +A  
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 379

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----------------DKRG 407
           ++ RM++ GC P+  TY  L+    + G    AFE + ++                D+  
Sbjct: 380 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 439

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
            A +V TY  ++DGL    KV+ A  LL+ +++ G +  +  +D+ +      G + +  
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499

Query: 468 KLSDHMRK 475
           ++   M K
Sbjct: 500 EVFLQMTK 507



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 55/320 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A E   +  K    P+ +TY  L             M+
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++    P+  TY   ID  C+     +A  L   M  KG    SP   TY  +I 
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGC---SPNVVTYTALID 592

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  +++    L   M   GC P+  TY+ ++  +C AG +++A   L EM    +P 
Sbjct: 593 GLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK 652

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG--------- 391
            +  Y C ++    +K+   +L +   M   G  P    Y MLI  + + G         
Sbjct: 653 YLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELH 710

Query: 392 ----------------------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
                                       + + AF  + EM +RG   ++  +  +I GL 
Sbjct: 711 KEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLV 770

Query: 424 DCSKVEEACFLLEEVVNKGL 443
           +  K +EA  L   + ++G+
Sbjct: 771 EVKKWDEALQLCYGICHEGV 790



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 22/281 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEE------------MIQMG 229
           ++  L +    D A +   R++ N   PN  TY  L    L++            M+  G
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 172

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+   +N+ + ++C  +    A  L   M T G     P    Y I I ++   +++ 
Sbjct: 173 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC---PPGYVVYNIFIGSICGQEKLP 229

Query: 290 E------CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
                     + G M+ + C+ +          +C  GK ++A++ ++EM  KG+ PD  
Sbjct: 230 SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTS 289

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +  LC     ++A  L+  M  VG  P V TY +LI  + + G  + A   + EM
Sbjct: 290 TYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 349

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              GC+  V TY  +I       +V +A  +   +V+ G +
Sbjct: 350 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCR 390



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 103/278 (37%), Gaps = 47/278 (16%)

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +P+  TYN L            G +  +EM + G   D FT        CK     +A D
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALD 96

Query: 256 LFE-----------------------------FMRTKGSTISSPTAKTYAIMIVALVQND 286
           + E                             F+         P   TY  ++   ++  
Sbjct: 97  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 156

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++  C  ++  M+  GC P+ S +  ++   C       AYK L  M   G PP  V YN
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 347 CFLKVLCDNKN------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            F+  +C  +        D A ++YG M+   C  +             +G+ D AF+  
Sbjct: 217 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLI 276

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            EM ++G   D  TY  +I  L   +KVE+A  L +E+
Sbjct: 277 KEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 314



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 120/288 (41%), Gaps = 53/288 (18%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D M ++ ++ + + VL  +LK           P +     ++D LC+ G  + A  +
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLKD-------SCTPNVVTYTAMIDGLCRIGESEKALKL 571

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K   PN  TY  L             +    +M + G +P+  TY   I+  C 
Sbjct: 572 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 631

Query: 247 ARMVTEAADLFEFMRT-----------------KGSTISS-------------PTAKTYA 276
           A ++ +A  L   M+                    S I+S             P A  Y 
Sbjct: 632 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYG 691

Query: 277 IMIVALVQNDRMEECFSLLGHM--INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           ++I    +  R+E    L   M  + S    D   Y  +++ +CLA +VEEA++   EM 
Sbjct: 692 MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRL-YGRMIEVGCWPSVQTYN 381
            +G+ P++  + C +K L + K  DEAL+L YG   E   W   ++++
Sbjct: 752 RRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVNWQGNKSFH 799



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 105/256 (41%), Gaps = 34/256 (13%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLV-------CS--------MLDYMKRNNKVF 152
           +D+     + Y  MID L       K  +L+       CS        ++D + +  K+ 
Sbjct: 542 KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKID 601

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP--- 209
           + +D+       +T+  +    P      +L++ LC  GL+D A  +   +K    P   
Sbjct: 602 LSLDL-------FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYL 654

Query: 210 --------NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
                     +   I  +  LEEM   G  P    Y   ID F KA  +  A +L + M 
Sbjct: 655 QGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMM 714

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
              S++ +     YA +I AL    ++EE F L   M   G +P++S +  +++G+    
Sbjct: 715 EVPSSVKTDN-DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVK 773

Query: 322 KVEEAYKFLEEMGNKG 337
           K +EA +    + ++G
Sbjct: 774 KWDEALQLCYGICHEG 789



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G  P   TY  +++ +  AG+V+  ++  +EM   G+  D  T  CF   LC      +A
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 362 LRLYGR----MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
           L +  R    +  V C         +IS   E    D A    H M    C  +V TY  
Sbjct: 95  LDMIEREDFKLDTVLC-------THMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRT 147

Query: 418 MIDGLF 423
           ++ G  
Sbjct: 148 LLSGFL 153


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 24/309 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           Y++ +++  +P I   N LLD+ CK G +D A  + K ++ +                  
Sbjct: 217 YSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAA---------------- 260

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
               G  P++ TYN  I+   +   + +AA L + MR         +A TY  +I  L+ 
Sbjct: 261 ----GCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLS----KKASAFTYNPLITGLLA 312

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            D +E+  +LL  M N G +P V TY  +++G+   G  E A    +EM  KG  PD++T
Sbjct: 313 RDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLIT 372

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +   C   N  +AL L+G +   G  P+V TYN+LI  Y  LG+ +GA     EM 
Sbjct: 373 YNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMT 432

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
           +  C  DV TY ++++G      +       +E+++KGL+     +++ +     IG + 
Sbjct: 433 EEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAIT 492

Query: 465 AIHKLSDHM 473
              +L + M
Sbjct: 493 NAFQLREEM 501



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 24/264 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-----PNANTYNILGMQT-------- 221
           P +   N+L+D  C+ G ++ A    +R+K ++      P+  TY IL   +        
Sbjct: 403 PTVLTYNILIDGYCRLGDLEGA----RRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAM 458

Query: 222 ----LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
                +EM+  G  PD F YNT I        +T A  L E M  +G  ISS T  TY +
Sbjct: 459 VRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRG--ISSDTV-TYNV 515

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L +   +++ + L   M+  G   D  TY  ++   C  G++ EA    + M   G
Sbjct: 516 LIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASG 575

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P +VTY  F+   C   N   A   + +M+E G  P+  TYN+L+     +G  + A+
Sbjct: 576 LSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAY 635

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDG 421
           + +HEM +RG   +  TY ++IDG
Sbjct: 636 QHFHEMLERGLVPNKYTYTLLIDG 659



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 4/220 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q  EEM+  G + D  TYN  ID  CK   + +A  L+  M T G  +      TY  +I
Sbjct: 496 QLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLD---CVTYTCLI 552

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A  +  R+ E  ++   M+ SG  P V TY   +   C  G +  AY +  +M  +G  
Sbjct: 553 HAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVE 612

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+ VTYN  +  LC     + A + +  M+E G  P+  TY +LI    + G    A   
Sbjct: 613 PNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRL 672

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           + EM ++G   D  T+  +  G F    + +A   LE VV
Sbjct: 673 YCEMHQKGIHPDHCTHNALFKG-FGEGHMYDAVQYLENVV 711



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q L  +++M      F+          A   T+    F+ M   G    +P  K    ++
Sbjct: 148 QLLNSLLRMS---TKFSAECQAQKSVPASCSTQCLSAFQEMARHGV---APFVKECNCVL 201

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--G 337
             L    R ++  ++   M+  G  P + TY  +L+  C AG++++A   L++M  +  G
Sbjct: 202 RVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAG 261

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ VTYN  +  L      ++A +L   ++ +    S  TYN LI+        + A 
Sbjct: 262 CLPNDVTYNVVINGLARKGELEKAAQLVD-IMRLSKKASAFTYNPLITGLLARDFVEKAG 320

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               EM+  G    V TY  +IDGLF     E A    +E+  KGL
Sbjct: 321 ALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGL 366



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            +EM   G  P +   NC L+VL D    D+   +Y  M+++G  PS+ TYN L+  + +
Sbjct: 182 FQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCK 241

Query: 390 LGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFLLE--EVVNKGLKL 445
            G  D A     +M+ R  GC  +  TY V+I+GL    ++E+A  L++   +  K    
Sbjct: 242 AGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAF 301

Query: 446 PYRKFDSYLMQLSVIGDLGAI 466
            Y    + L+    +   GA+
Sbjct: 302 TYNPLITGLLARDFVEKAGAL 322


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 158/379 (41%), Gaps = 59/379 (15%)

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNNKVFVPVDVLLM 160
           F+ +  Q N     + Y+ +ID L   +   +   L   ML   +  NN  +  +   L 
Sbjct: 181 FLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLC 240

Query: 161 ILKQYTEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNAN 212
           IL  + E I++       K  P+    N L+DALCK G+V  A  +    +++ +KP+  
Sbjct: 241 ILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVV 300

Query: 213 TYNIL-----------------------------------------------GMQTLEEM 225
           TYN L                                                M   EEM
Sbjct: 301 TYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEM 360

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            Q G  PD  TYNT I   C    + +A  LF  M   G     P   TY I+   L +N
Sbjct: 361 SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQI---PDLVTYRILFDYLCKN 417

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R+ E   LL  +  +   PD+  Y  V++GMC AG++E A     ++ +KG  PD+ TY
Sbjct: 418 HRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTY 477

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  LC      EA +L+G M E GC P+  TYN++   +    E   A + + EM  
Sbjct: 478 TIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLS 537

Query: 406 RGCAQDVDTYCVMIDGLFD 424
           RG + DV T  ++++ L D
Sbjct: 538 RGFSIDVSTTTLLVEMLSD 556



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 137/303 (45%), Gaps = 21/303 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           +K+  QP       L+  LC  G +  A  +  ++  +  +P+  TY  L          
Sbjct: 116 LKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNT 175

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M Q    P    Y+T ID+ CK R +TEA  LF  M  KG    SP   TY
Sbjct: 176 STAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGI---SPNNFTY 232

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L      +E   L   MI+   +PD  T+  +++ +C  G V +A+  ++ M  
Sbjct: 233 SSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQ 292

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               PD+VTYN  +   C      + + ++  M+  GC PSV +Y  LI+ Y ++   D 
Sbjct: 293 SDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDK 352

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A   + EM ++G   D  TY  +I GL    ++ +A  L  E+V  G ++P    YR   
Sbjct: 353 AMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYG-QIPDLVTYRILF 411

Query: 452 SYL 454
            YL
Sbjct: 412 DYL 414



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 146/319 (45%), Gaps = 28/319 (8%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEM 225
            LN+L+++ C    + +A ++   + K   +P+  T+  L             +Q  ++M
Sbjct: 91  TLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKM 150

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
              G  PD  TY T I+  CK   V   +    F+R+       PT   Y+ +I +L ++
Sbjct: 151 TGEGFQPDVLTYGTLINGLCK---VGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKD 207

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            ++ E  SL   M+  G  P+  TY  ++ G+C+ G  +EA +    M ++   PD +T+
Sbjct: 208 RQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTF 267

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---MYFELGEPDGAFETWHE 402
           N  +  LC      +A  +   MI+    P V TYN L+    +  E+G+    F+T   
Sbjct: 268 NTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDT--- 324

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M ++GC   V +Y  +I+G      +++A  L EE+  +GL      +++ +  L  +G 
Sbjct: 325 MVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVG- 383

Query: 463 LGAIHKLSDHMRKFYNPVI 481
                +L D +  F+  V+
Sbjct: 384 -----RLRDAIALFHEMVV 397



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 170/407 (41%), Gaps = 44/407 (10%)

Query: 47  SVSDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMW 104
           S+ D +KL  +I  + + +   ++ K +DS G+P  T ++  ++  F    ++ F F + 
Sbjct: 53  SIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVL 112

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ 164
            G      ++P           ST       R +C           V   +   L +  +
Sbjct: 113 -GDILKLGYQP-----------STATFTTLIRGLC-----------VEGKIGEALQLFDK 149

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
            T +     QP++     L++ LCK G    A    + ++ +  +P    Y+ +      
Sbjct: 150 MTGE---GFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +    +M+  G +P+NFTY++ I   C      EA  LF  M  +      P 
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIM---PD 263

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  ++ AL +   + +   ++  MI S   PDV TY  +++G CL  ++ +     +
Sbjct: 264 QLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFD 323

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  KG  P +++Y   +   C  +  D+A+ L+  M + G  P   TYN LI     +G
Sbjct: 324 TMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVG 383

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
               A   +HEM   G   D+ TY ++ D L    ++ EA  LL+ +
Sbjct: 384 RLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVI 430



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 122/264 (46%), Gaps = 4/264 (1%)

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
           N NT +   +     M++M   P    ++  + +  + +  +    L++ M + G   ++
Sbjct: 31  NVNTIDD-ALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNT 89

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
            T     I+I +    +R+   FS+LG ++  G  P  +T+  ++ G+C+ GK+ EA + 
Sbjct: 90  YTLN---ILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQL 146

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++M  +G+ PD++TY   +  LC   N   A+R    M +  C P+V  Y+ +I    +
Sbjct: 147 FDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
             +   A   + +M  +G + +  TY  +I GL      +EA  L   ++++ +      
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 266

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           F++ +  L   G +   H + D M
Sbjct: 267 FNTLVDALCKEGMVVKAHYVVDVM 290


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 151/341 (44%), Gaps = 26/341 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E   V   P++    +L+D+ CK GL++ A +    +++     N  TY  L      
Sbjct: 311 FQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLK 370

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE------------- 258
                        MI  G  P+  TY+  +D  CKA  + +A +++              
Sbjct: 371 AKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDF 430

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
           +   K +   +P   TY  +I  L +  ++ +   LL  M+++GC P+   Y  +++G C
Sbjct: 431 YFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFC 490

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             GK++ A +    M   GY P + TY   +  +  ++  D A+++  +M+E  C P+V 
Sbjct: 491 KVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVV 550

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I     +GE   A +    M+++GC+ +V TY  +IDGL    KV+ +  L  ++
Sbjct: 551 TYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQM 610

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             KG    Y  +   +      G L   H L   M++ Y P
Sbjct: 611 STKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWP 651



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 135/307 (43%), Gaps = 34/307 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-----------------KNKV 207
           +   I     P     + L+D LCK G +  A  +  ++                  + +
Sbjct: 381 FNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSI 440

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            PN  TY  L              + L+ M+  G  P++  Y+  ID FCK   +  A +
Sbjct: 441 APNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQE 500

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           +F  M   G     PT  TY  +I A+ ++ R++    +L  M+ S C P+V TY  +++
Sbjct: 501 VFLRMSKCGYL---PTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMID 557

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G+C  G+ ++A K L  M  KG  P++VTY   +  L  +   D +L+L+ +M   GC P
Sbjct: 558 GLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAP 617

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +  TY +LI+     G  D A     EM +    + +  YC ++ G     K   +  LL
Sbjct: 618 NYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGF--SKKFIASLGLL 675

Query: 436 EEVVNKG 442
           EE+ + G
Sbjct: 676 EELESHG 682



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 26/256 (10%)

Query: 200 CKRV-----KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKR+     K    PN + +N L              + L+ M   G  P    YN  I 
Sbjct: 161 CKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIG 220

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C         ++  A  ++E M      ++      +A  +  +    + +  F ++ 
Sbjct: 221 SICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGM---GKFDMAFQIIK 277

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+  G +PD STY +V+  +C A KVE+A+   +EM + G  PD+ TY   +   C   
Sbjct: 278 VMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAG 337

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A   +  M  +GC  +V TY  L+  Y +  +   A + ++ M   GC  +  TY 
Sbjct: 338 LIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYS 397

Query: 417 VMIDGLFDCSKVEEAC 432
            ++DGL    ++++AC
Sbjct: 398 ALVDGLCKAGEIQKAC 413



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 171/438 (39%), Gaps = 91/438 (20%)

Query: 55  YEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHE 114
           Y A++D       ++KA +     + T   VG    F FE K          H D+ A  
Sbjct: 396 YSALVDGLCKAGEIQKACEVYTKLIGTSDNVG--SDFYFEGK----------HTDSIAPN 443

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
            + Y  +ID L     KA +      +LD M  N                         +
Sbjct: 444 VVTYGALIDGLC----KAHKVVDAQELLDAMLSNG-----------------------CE 476

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P     + L+D  CK G +D A+ +  R+ K    P  +TY  L             M+ 
Sbjct: 477 PNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKV 536

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M++    P+  TY   ID  C+     +A  L   M  KG    SP   TY  +I  
Sbjct: 537 LSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGC---SPNVVTYTALIDG 593

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ +++    L   M   GC P+  TY+ ++   C AG ++EA+  L EM    +P  
Sbjct: 594 LGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKY 653

Query: 342 IVTYNCFLK-----------------------------VLCDN--KNG--DEALRLYGRM 368
           +  Y   ++                             +L DN  K G  +EAL L+  M
Sbjct: 654 LQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEM 713

Query: 369 IEVGCWPSVQTYNMLISMYFEL---GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           +E+    ++ + +M  S+   L    + + AFE + E+ ++G   ++  +  +I GL   
Sbjct: 714 MELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKV 773

Query: 426 SKVEEACFLLEEVVNKGL 443
           +K  EA  L   + ++G+
Sbjct: 774 NKWNEALQLCYSICDEGV 791



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 29/306 (9%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY 214
           D L+MI +   E  K+ T      ++ L++A     L D A +   R++ N   PN  TY
Sbjct: 93  DALVMIER---EDFKLDTVLCTQMISGLMEA----SLFDEAISFLHRMRCNSCIPNVVTY 145

Query: 215 NILGMQTLEE------------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
             L    L++            M++ G  P+   +N+ + ++C AR    A  L + M  
Sbjct: 146 RTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMAD 205

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEE------CFSLLGHMINSGCLPDVSTYKEVLEG 316
            G     P    Y I I ++   + +           +   M+ S C+ +          
Sbjct: 206 CGC---PPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARC 262

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C  GK + A++ ++ M  KG+ PD  TY+  +  LC+    ++A  L+  M  VG  P 
Sbjct: 263 LCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPD 322

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TY +LI  + + G  + A   + EM   GC+ +V TY  ++       ++ +A  +  
Sbjct: 323 VYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFN 382

Query: 437 EVVNKG 442
            +++ G
Sbjct: 383 RMIDAG 388



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 112/287 (39%), Gaps = 55/287 (19%)

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA-- 253
           +P+  TYN L            G +  +EM + G   D FT        CK    ++A  
Sbjct: 37  RPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALV 96

Query: 254 -----------------------ADLFE----FMRTKGSTISSPTAKTYAIMIVALVQND 286
                                  A LF+    F+         P   TY  ++   ++  
Sbjct: 97  MIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKK 156

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++  C  ++  M+  GC P+ S +  ++   C A     AYK L+ M + G PP  V YN
Sbjct: 157 QLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYN 216

Query: 347 CFLKVLCDNKNGDE---------ALRLYGRMIEVGC-WPSVQTYNMLISMYFELGEPDGA 396
            F+  +C    G+E         A ++Y  M+   C    V T N    +   +G+ D A
Sbjct: 217 IFIGSIC---GGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCL-CGMGKFDMA 272

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           F+    M  +G   D  TY  +I  L +  KVE+A  L +E+ + G+
Sbjct: 273 FQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 319



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 120/289 (41%), Gaps = 54/289 (18%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D M ++ ++    D+ + +L Q  E       P +     ++D LC+ G    A  +
Sbjct: 519 SLIDAMFKDRRL----DLAMKVLSQMVES---SCTPNVVTYTAMIDGLCRIGECQKALKL 571

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K   PN  TY  L             +Q   +M   G AP+  TY   I+  C 
Sbjct: 572 LSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCA 631

Query: 247 ARMVTEAADLF------------------------EFMRTKG------STISSPTAKTYA 276
           A ++ EA  L                         +F+ + G      S  + P A  Y 
Sbjct: 632 AGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYG 691

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVST---YKEVLEGMCLAGKVEEAYKFLEEM 333
           ++I    +  R+EE   L   M+      ++++   Y  +++ +CLA ++E+A++   E+
Sbjct: 692 LLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEI 751

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-WPSVQTYN 381
             KG  P++  + C +K L      +EAL+L   + + G  W S  +++
Sbjct: 752 TRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGVNWQSNNSFD 800



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 74/206 (35%), Gaps = 20/206 (9%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV--- 280
           E+   G+ P   TYN  +     A  +     + + M   G  +   T   +A  +    
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 281 ----ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
               ALV  +R  E F L           D     +++ G+  A   +EA  FL  M   
Sbjct: 90  RWSDALVMIER--EDFKL-----------DTVLCTQMISGLMEASLFDEAISFLHRMRCN 136

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              P++VTY   L      K      R+   M++ GC P+   +N L+  Y    +   A
Sbjct: 137 SCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYA 196

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGL 422
           ++    M   GC      Y + I  +
Sbjct: 197 YKLLKRMADCGCPPGYVAYNIFIGSI 222


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 147/320 (45%), Gaps = 25/320 (7%)

Query: 171 VKTQPEIN--ALNLLLDALCKCGLVDYAETICKR-------VKNKVKPNANTYNILGMQT 221
           +KT   +N   +N LL+ LC    VD A  I  R       + N V  N     +   + 
Sbjct: 117 LKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKR 176

Query: 222 LEEMIQMGHA----------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           +EE +++ H           P+  TYNT ID  CKA+ V  A  + + M  KG  +    
Sbjct: 177 VEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLD--- 233

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY+ +I  L +   ++    +L HMI+ G  PDV TY  +++G+C A  V+ A   L+
Sbjct: 234 VVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQ 293

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M +KG  PD+VTYN  +  LC  +  D A  +   MI+    P +QTYN LI  Y   G
Sbjct: 294 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTG 353

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           E         EM  RG   DV TY +++D L    K  EA  +   ++ KG+K       
Sbjct: 354 EWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIK---PNVT 410

Query: 452 SYLMQLSVIGDLGAIHKLSD 471
            Y + L      GAI  L+D
Sbjct: 411 IYGILLHGYAARGAIADLTD 430



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 18/297 (6%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI--CKRVKNKVKPNANTYNILG 218
           ++++  E       P++   +LLLD LCK G    A  I  C  ++  +KPN   Y IL 
Sbjct: 358 VVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCM-IRKGIKPNVTIYGILL 416

Query: 219 ------------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                          L+ M+  G +P+N+ +N  +  + K  M+ EA  +F  M   G  
Sbjct: 417 HGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGL- 475

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             SP   TY I+I AL +  R+++       MIN G  P+   +  ++ G+C   + E+A
Sbjct: 476 --SPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKA 533

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   EM ++G  P++V +N  +  LC+      A RL   M  VG  P+V +YN LI  
Sbjct: 534 EELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGG 593

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   G  D A +    M   G   D+ +Y  ++ G     +++ A  L  E++ KG+
Sbjct: 594 HCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGV 650



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           V+  L +L    E       P +   N ++D LCK   VD AE +               
Sbjct: 177 VEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGV--------------- 221

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  L+ MI  G   D  TY+T ID  CKA+ V  A  + + M  KG     P   T
Sbjct: 222 -------LQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGV---KPDVVT 271

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L +   ++    +L HMI+ G  PDV TY  +++G+C A  V+ A   L+ M 
Sbjct: 272 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +K   PDI TYNC +          E +R    M   G  P V TY++L+    + G+  
Sbjct: 332 DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCT 391

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            A + ++ M ++G   +V  Y +++ G      + +   LL+ +V  G+
Sbjct: 392 EARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGI 440



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAE-TICKRVKNKVKPNANTYNIL--GMQTLE------- 223
            P++    +L+DALCK G VD A     + + + V PN+  +N L  G+ T++       
Sbjct: 476 SPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEE 535

Query: 224 ---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM   G  P+   +NT +   C    V  A  L + M   G     P   +Y  +I 
Sbjct: 536 LFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGV---RPNVISYNTLIG 592

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 R +E   LL  M++ G  PD+ +Y  +L G C  G+++ AY    EM  KG  P
Sbjct: 593 GHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTP 652

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             VTY+  L+ L   +   EA  LY  MI+ G    + TYN++++   +    D AF+ +
Sbjct: 653 GAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIF 712

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +  +    ++ T+ +MID LF   + ++A  L   + + GL
Sbjct: 713 QSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGL 755



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 141/341 (41%), Gaps = 51/341 (14%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           ++D LCK   VD AE + + + +K VKP+  TYN +                L+ MI  G
Sbjct: 240 IIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKG 299

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TYNT ID  CKA+ V  A  + + M  K      P  +TY  +I   +     +
Sbjct: 300 VKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDV---KPDIQTYNCLIHGYLSTGEWK 356

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E    L  M   G  PDV TY  +L+ +C  GK  EA K    M  KG  P++  Y   L
Sbjct: 357 EVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILL 416

Query: 350 K--------------------------------VLCDNKNG---DEALRLYGRMIEVGCW 374
                                            VLC        DEA+ ++ RM + G  
Sbjct: 417 HGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLS 476

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P V TY +LI    +LG  D A   +++M   G   +   +  ++ GL    + E+A  L
Sbjct: 477 PDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEEL 536

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             E+ ++G++     F++ +  L   G +    +L D M +
Sbjct: 537 FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMER 577



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 133/305 (43%), Gaps = 24/305 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE-------TICKRVKNKVKPNANTY 214
           LK + E +       + A N LL+ + +      +E        + +   NKV+P+  TY
Sbjct: 34  LKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTY 93

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           +IL            G      +++ G   +    N  ++  C A+ V EA D+   +R 
Sbjct: 94  SILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDI--LLRR 151

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG---CLPDVSTYKEVLEGMCL 319
                  P   +   ++  L    R+EE   LL  M   G   C P+V TY  +++G+C 
Sbjct: 152 MPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK 211

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           A  V+ A   L+ M +KG   D+VTY+  +  LC  +  D A  +   MI+ G  P V T
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT 271

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN +I    +    D A      M  +G   DV TY  +IDGL     V+ A  +L+ ++
Sbjct: 272 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331

Query: 440 NKGLK 444
           +K +K
Sbjct: 332 DKDVK 336



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 45/326 (13%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P++   N ++D LCK   VD A+ + + + +K VKP+  TYN L             ++
Sbjct: 301 KPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVR 360

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------------- 264
            LEEM   G  PD  TY+  +D  CK    TEA  +F  M  KG                
Sbjct: 361 RLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYA 420

Query: 265 ----------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                           +   SP    + I++ A  +   ++E   +   M   G  PDV 
Sbjct: 421 ARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVV 480

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  +++ +C  G+V++A     +M N G  P+ V +N  +  LC     ++A  L+  M
Sbjct: 481 TYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEM 540

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            + G  P+V  +N ++      G+   A      M++ G   +V +Y  +I G     + 
Sbjct: 541 WDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRT 600

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYL 454
           +EA  LL+ +V+ GLK     +D+ L
Sbjct: 601 DEAAQLLDVMVSVGLKPDLISYDTLL 626



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P +   N ++  LC  G V  A+ +   ++   V+PN  +YN L              Q
Sbjct: 546 RPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQ 605

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+ M+ +G  PD  +Y+T +  +CK   +  A  LF  M  KG T   P A TY+ ++ 
Sbjct: 606 LLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVT---PGAVTYSTILQ 662

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    R  E   L  +MI SG   D+ TY  +L G+C    V+EA+K  + + +K   P
Sbjct: 663 GLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRP 722

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +I+T+   + VL       +A+ L+  +   G  P+V TY +++    + G  D     +
Sbjct: 723 NIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLF 782

Query: 401 HEMDKRGCAQD 411
             M+K GC  D
Sbjct: 783 LAMEKSGCTPD 793



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           F+ +    ++   PD+ TY  +    C  G++E  +     +   G+  + V  N  L  
Sbjct: 75  FNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNG 134

Query: 352 LCDNKNGDEALR-LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG--- 407
           LCD K  DEA+  L  RM E GC P+V + N L+         + A E  H M + G   
Sbjct: 135 LCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGN 194

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           C  +V TY  +IDGL     V+ A  +L+ +++KG+KL
Sbjct: 195 CTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKL 232


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 142/312 (45%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +    +++ AL + G    A  +   ++ +  +PN +TY ++            G + 
Sbjct: 72  PTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRI 131

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM++ G  P   TYN  ID +CK  MV  A ++ + M    S   +P  +TY  +I  
Sbjct: 132 LDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMH---SNSCNPNERTYNELICG 188

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   +    +LL  M+ S   P V TY  ++ G C  G ++ AY+ L  M   G  PD
Sbjct: 189 FCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPD 248

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+ F+  LC     +EA  L+  + E G   +   Y  LI  Y + G+ D A     
Sbjct: 249 QWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLD 308

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M    C  +  TY  +IDGL    KV+EA  L+E ++ KGLK     +   ++ +   G
Sbjct: 309 RMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEG 368

Query: 462 DLGAIHKLSDHM 473
           D    H++ D M
Sbjct: 369 DFDYAHRILDQM 380



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 160/427 (37%), Gaps = 118/427 (27%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD--------------------YAETIC 200
           IL +  EK  V + P  NAL   +D  CK G+V+                    Y E IC
Sbjct: 131 ILDEMVEKGLVPSVPTYNAL---IDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELIC 187

Query: 201 ----------------KRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP 232
                           K +++++ P+  TYN L              + L  M + G  P
Sbjct: 188 GFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVP 247

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D +TY+  IDT CK   + EA  LF  ++ KG   +      Y  +I    +  +M++  
Sbjct: 248 DQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEV---IYTALIDGYCKAGKMDDAN 304

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE--------------------------- 325
           SLL  M+   CLP+ STY  +++G+C   KV+E                           
Sbjct: 305 SLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAM 364

Query: 326 --------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
                   A++ L++M + GY PD+  Y  F+   C   N  EA  +   M E G  P  
Sbjct: 365 LKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDA 424

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD------------C 425
            TY ++I  Y  LG  + AF+    M   GC     TY  +I  L              C
Sbjct: 425 LTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALC 484

Query: 426 S-----------------KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
                             K E A  L E+++  G       +   ++ L  +G LG   K
Sbjct: 485 DSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQK 544

Query: 469 LSDHMRK 475
           L DHM +
Sbjct: 545 LFDHMNE 551



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 121/263 (46%), Gaps = 27/263 (10%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
           L+  LC+ G VD    I K+++ +   P   TY ++     E   +M             
Sbjct: 45  LIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRM------------- 91

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
                     EA +LF  MR +G     P   TY +MI A+ +  ++EE   +L  M+  
Sbjct: 92  ----------EAINLFSEMRERG---CEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G +P V TY  +++G C  G VE A + L+ M +    P+  TYN  +   C  KN   A
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRA 198

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + L  +M+E    PSV TYN LI    ++G  D A+   + M++ G   D  TY V ID 
Sbjct: 199 MALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDT 258

Query: 422 LFDCSKVEEACFLLEEVVNKGLK 444
           L    ++EEA  L   +  KG+K
Sbjct: 259 LCKKGRIEEANVLFNSLKEKGIK 281



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 153/352 (43%), Gaps = 50/352 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    ++ +D LCK G ++ A  +   +K K +K N   Y  L                
Sbjct: 247 PDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSL 306

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+     P++ TYN  ID  CK R V EA  L E M  KG   + PT   Y I+IVA
Sbjct: 307 LDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPT---YTILIVA 363

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           +++    +    +L  M++SG  PDV  Y   +   C  G ++EA   +  M  +G  PD
Sbjct: 364 MLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPD 423

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI----------------- 384
            +TY   +         + A  +  RM + GC PS  TY+ LI                 
Sbjct: 424 ALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVAL 483

Query: 385 -----SMYF-------ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
                +++F       ++ + + A E + +M + GC+ +++TY  +I GL    ++  A 
Sbjct: 484 CDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQ 543

Query: 433 FLLEEVVNKGLKLPYRKFDSYL---MQLSVIGDLGAIHKLSDHMRKFYNPVI 481
            L + +  +G+      ++S L    +L + GD  A+  +   M   + P++
Sbjct: 544 KLFDHMNERGVSPSEAIYNSLLNCCCELGIYGD--AVRLVGAMMEHGHLPLL 593



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 124/323 (38%), Gaps = 74/323 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P  +  N L+D LCK   V  A  + +  ++  +K    TY IL              + 
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG----------------- 264
           L++M+  G+ PD + Y   I  FC    + EA D+   M  +G                 
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGG 436

Query: 265 ---------------STISSPTAKTYAIMIVALVQND----------------------- 286
                           T   P+  TY+ +I  L++ +                       
Sbjct: 437 LGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVA 496

Query: 287 ------RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 + E    L   M+  GC P+++TY +++ G+C  G++  A K  + M  +G  P
Sbjct: 497 DVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSP 556

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
               YN  L   C+     +A+RL G M+E G  P +++ N+L    +E G  + A   +
Sbjct: 557 SEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVF 616

Query: 401 HEMDKRGCAQDVDTYCVMIDGLF 423
             + + G   D   + ++IDGL 
Sbjct: 617 SNLLQCGYNDDEVAWKILIDGLL 639



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 3/226 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V  A  +F  M  KG   +  +   Y  +I  L +  R++E  ++   M    C P V T
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVS---YTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRT 76

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++  +  +G+  EA     EM  +G  P+I TY   +  +C     +E  R+   M+
Sbjct: 77  YTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMV 136

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           E G  PSV TYN LI  Y + G  + A E    M    C  +  TY  +I G      V 
Sbjct: 137 EKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVH 196

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            A  LL +++   L      ++S +     IG L + ++L + M +
Sbjct: 197 RAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNE 242



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 68/125 (54%)

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
           L   V  A+     M  KG   + V+Y   +  LC+    DE + ++ +M E  C+P+V+
Sbjct: 16  LNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVR 75

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY +++   FE G    A   + EM +RGC  ++ TY VMI+ +   +K+EE   +L+E+
Sbjct: 76  TYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEM 135

Query: 439 VNKGL 443
           V KGL
Sbjct: 136 VEKGL 140



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 140/359 (38%), Gaps = 59/359 (16%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI--LKQ----YTEKI- 169
            YN +ID L   +   +   L+ SM+   ++  K  VP   +L++  LK+    Y  +I 
Sbjct: 321 TYNALIDGLCKERKVQEALLLMESMI---QKGLKCTVPTYTILIVAMLKEGDFDYAHRIL 377

Query: 170 ----KVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNI-------L 217
                   QP++      + A C  G +  AE +   + +  V P+A TY +       L
Sbjct: 378 DQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGL 437

Query: 218 GM-----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE-------------------- 252
           G+       L+ M   G  P + TY+  I    K  +  +                    
Sbjct: 438 GLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVAD 497

Query: 253 ---------AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
                    A +LFE M   G    SP   TYA +I+ L +  R+     L  HM   G 
Sbjct: 498 VWKMMKFETALELFEKMLEHGC---SPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGV 554

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            P  + Y  +L   C  G   +A + +  M   G+ P + + N     L +  + ++A  
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKV 614

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           ++  +++ G       + +LI    + G  DG  E    M+ RGC     TY ++I+GL
Sbjct: 615 VFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%)

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           N+ +   FS+   M   GC  +  +Y  ++ G+C  G+V+E     ++M      P + T
Sbjct: 17  NNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRT 76

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +  L ++    EA+ L+  M E GC P++ TY ++I+   +  + +       EM 
Sbjct: 77  YTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMV 136

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           ++G    V TY  +IDG      VE A
Sbjct: 137 EKGLVPSVPTYNALIDGYCKEGMVEAA 163


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 144/307 (46%), Gaps = 23/307 (7%)

Query: 149 NKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKV 207
           N+V     VL  ILK       +  QP+      L+  LC  G +  A     K +    
Sbjct: 114 NRVGFAFSVLAKILK-------LGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 166

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +PN  TY  L             ++ L  M Q    PD   Y + ID+ CK R VTEA +
Sbjct: 167 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFN 226

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LF  M  +G    SP   TY  ++ AL      +   +LL  M+NS  LPDV  +  V++
Sbjct: 227 LFSQMVGQGI---SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 283

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            +C  GKV EA++ ++ M  +G  PD+VTY   +   C     DEA++++  M+  G  P
Sbjct: 284 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP 343

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            V +Y  LI+ Y ++ + D A   + EM ++    D  TY  ++ GL    ++++A  L 
Sbjct: 344 DVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALF 403

Query: 436 EEVVNKG 442
            E+V +G
Sbjct: 404 HEMVARG 410



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 21/307 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           +  K  P++   + ++DALCK G V  A  I    ++  V+P+  TY  L          
Sbjct: 267 VNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEM 326

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++  + M++ G APD  +Y T I+ +CK   + +A  LFE M  K      P  KTY
Sbjct: 327 DEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI---PDTKTY 383

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++  L    R+++  +L   M+  G +PD+ TY  +L+ +C    +EEA   L+ +  
Sbjct: 384 NTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEA 443

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               PDI  YN  +  +C     + A  L+  +   G  PSV TYN++I    + G  + 
Sbjct: 444 SNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNE 503

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A + + EMD   C+ D  TY  +  G    ++   A  LLEE++ +G        DS  +
Sbjct: 504 ANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSA-----DSCFL 558

Query: 456 QLSVIGD 462
            LSV+ +
Sbjct: 559 MLSVLSE 565



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 82/174 (47%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +A ++ ++ +        SL   M + G  P+V T   ++   C   +V  A+  
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L ++   G+ PD  T+   ++ LC      EAL L+ +MI+ G  P+V TY  LI+   +
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +G    A      M++  C  DV  Y  +ID L    +V EA  L  ++V +G+
Sbjct: 183 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGI 236



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%)

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PP IV +   L  +   K+    L L  +M   G  P+V T N+LI+ +  L     AF 
Sbjct: 62  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 121

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              ++ K G   D  T+  +I GL    K+ EA  L ++++++G +     + + +  L 
Sbjct: 122 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 181

Query: 459 VIGDLGAIHKLSDHMRK 475
            +G+  A  +L   M +
Sbjct: 182 KVGNTSAAIRLLRSMEQ 198


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 30/318 (9%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           K Y E ++    P++  LN  +D + K G  +    + + +K +   P+  +Y+IL    
Sbjct: 396 KMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSL 455

Query: 218 -----GMQTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  +T E    M   G   D   YNT ID FCK+  V +A  L E M+T G     
Sbjct: 456 VKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGH---H 512

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  ++  L + DR++E + L     ++G   +   Y  +++G    G+V+EAY  
Sbjct: 513 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLV 572

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +EEM  KG  P++ T+NC L  L   +  +EAL  +  M ++ C P+  TY +LI+   +
Sbjct: 573 MEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCK 632

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE------------ 437
           + + + AF  W EM K+G   +  TY  MI GL     V +A  L E             
Sbjct: 633 VRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSAS 692

Query: 438 --VVNKGLKLPYRKFDSY 453
              + +GL +  R  D+Y
Sbjct: 693 YNAMIEGLSIANRALDAY 710



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 144/343 (41%), Gaps = 44/343 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-GM-----------QTL 222
           P + A N +L  L K G  D A  I + +K    PN  TYNI+ GM           +  
Sbjct: 234 PSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVR 293

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK-----GSTISS-------- 269
           + M + G  P+  T N  ID  CKA+ + EA  +FE M  K     G+T  S        
Sbjct: 294 DAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQ 353

Query: 270 -------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                              P    Y  +I    + DR E+   +   M+ SGC PD+   
Sbjct: 354 GRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLL 413

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
              ++ +  AG+ E+     EE+  +G+ PD  +Y+  +  L       E   LY  M +
Sbjct: 414 NTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKD 473

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC    + YN +I  + + G+ + A++   EM   G    V TY  ++DGL    +++E
Sbjct: 474 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDE 533

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           A  L EE  + G++L    + S +     +G +   + + + M
Sbjct: 534 AYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEM 576



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 102/219 (46%), Gaps = 4/219 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L+EM       D   YN  ID F K   V  A   F  M+  G     P   TY  
Sbjct: 115 ALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLV---PDDVTYTS 171

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           M+  L + +R++E   +   M  +  +P    Y  ++ G   AGK +EAY  LE    KG
Sbjct: 172 MMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 231

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P +V YNC L  L      D+ALR++  M +    P++ TYN++I M  + G  + AF
Sbjct: 232 CIPSVVAYNCILTCLGKKGKTDKALRIFEEM-KRDAMPNLPTYNIIIGMLCKAGNVEAAF 290

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +    M + G   +V T  +MID L    K++EAC + E
Sbjct: 291 KVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFE 329



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 118/292 (40%), Gaps = 41/292 (14%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q L EM   G  P N+T    + +  K+R + EA DL + MR        P    Y  +I
Sbjct: 12  QILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMR---HFKFRPAFSAYTTLI 68

Query: 280 VALVQ---NDRMEECF--------------------------------SLLGHMINSGCL 304
            AL +   +DRM   F                                SLL  M ++   
Sbjct: 69  GALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFD 128

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
            D+  Y   ++     GKV+ A+KF  EM   G  PD VTY   + VLC     DEA+ +
Sbjct: 129 ADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEI 188

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           + +M +    P    YN +I  Y   G+ D A+        +GC   V  Y  ++  L  
Sbjct: 189 FEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGK 248

Query: 425 CSKVEEACFLLEEVVNKGL-KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             K ++A  + EE+    +  LP   ++  +  L   G++ A  K+ D M++
Sbjct: 249 KGKTDKALRIFEEMKRDAMPNLP--TYNIIIGMLCKAGNVEAAFKVRDAMKE 298


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 178/397 (44%), Gaps = 25/397 (6%)

Query: 69  EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
           E  + +L   L    V  VL R Q +E++A +FF WA  Q  Y H+P+ Y  M+++LS T
Sbjct: 162 EGQMRNLLRSLKPSQVCAVL-RSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKT 220

Query: 129 KYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLLMILKQYTEKIKVKT-------QPEINAL 180
           K      R++  M    + R  + F  V V      Q  + +KV T       +P +   
Sbjct: 221 KLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLIC 280

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQ 227
           N  +D   +   ++ A    +R++   + PN  TYN +             ++ LE+M  
Sbjct: 281 NTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHS 340

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  +Y T +   CK + + E  DL + M  +   +  P   TY  +I  L ++D 
Sbjct: 341 KGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV--PDQVTYNTLIHMLTKHDH 398

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYN 346
            +E    L      G   D   Y  ++  +C  G++ EA   + EM +KG+ PPD+VTY 
Sbjct: 399 ADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYT 458

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C     D+A +L   M   G  P+  +Y  L++     G+   A E  +  ++ 
Sbjct: 459 AVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEH 518

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             + +  TY V++ GL    K+ EAC ++ E+V KG 
Sbjct: 519 WWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGF 555



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 10/275 (3%)

Query: 222 LEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           + EM+  GH  PD  TY   ++ FC+   V +A  L + M T G     P   +Y  ++ 
Sbjct: 441 INEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGH---KPNTVSYTALLN 497

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            + +  +  E   ++         P+  TY  ++ G+   GK+ EA   + EM  KG+ P
Sbjct: 498 GMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFP 557

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             V  N  L+ LC +    EA +     +  GC  +V  +  +I  + +  E D A    
Sbjct: 558 GPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVL 617

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLMQL 457
            +M       DV TY  ++D L    ++ EA  L++++++KG+    + YR       Q+
Sbjct: 618 DDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQM 677

Query: 458 SVIGDLGAI-HKLSDHM--RKFYNPVIARRLALNQ 489
             + DL AI  K+      R  YN VI +   L +
Sbjct: 678 GKVDDLVAILEKMISRQKCRTIYNQVIEKLCVLGK 712



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 17/273 (6%)

Query: 183 LLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL------------GMQTLEEMIQM 228
           ++ ALCK G +  A+ +   +  K    P+  TY  +              + L+ M   
Sbjct: 424 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTH 483

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           GH P+  +Y   ++  C+     EA    E M        SP + TY++++  L +  ++
Sbjct: 484 GHKPNTVSYTALLNGMCRTGKSLEAR---EMMNMSEEHWWSPNSITYSVIMHGLRREGKL 540

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E   ++  M+  G  P       +L+ +C  G+  EA KF+EE  NKG   ++V +   
Sbjct: 541 SEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTV 600

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C N   D AL +   M  +     V TY  L+    + G    A E   +M  +G 
Sbjct: 601 IHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGI 660

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
                TY  +I       KV++   +LE+++++
Sbjct: 661 DPTPVTYRTVIHRYCQMGKVDDLVAILEKMISR 693



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 108/248 (43%), Gaps = 4/248 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q  +  D   Y + ++   K ++   +  +   M+ +G    +P A  ++ ++V+  +  
Sbjct: 200 QWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRG-IYRTPEA--FSRVMVSYSRAG 256

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ +   +L  M  +G  P++      ++    A ++E+A +FLE M   G  P++VTYN
Sbjct: 257 QLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 316

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK- 405
           C ++  CD    +EA+ L   M   GC P   +Y  ++    +        +   +M K 
Sbjct: 317 CMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 376

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G   D  TY  +I  L      +EA + L++   KG ++    + + +  L   G +  
Sbjct: 377 HGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSE 436

Query: 466 IHKLSDHM 473
              L + M
Sbjct: 437 AKDLINEM 444



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 40/301 (13%)

Query: 145 MKRNNKVFVPVDVLL-MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203
           ++R  K+    DV+  M+LK +         P    +NLLL +LC+ G    A       
Sbjct: 534 LRREGKLSEACDVVREMVLKGFF--------PGPVEINLLLQSLCRDGRTHEARKF---- 581

Query: 204 KNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE--FMR 261
                             +EE +  G A +   + T I  FC+   +  A  + +  ++ 
Sbjct: 582 ------------------MEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI 623

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            K + +      TY  ++  L +  R+ E   L+  M++ G  P   TY+ V+   C  G
Sbjct: 624 NKHADVF-----TYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMG 678

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           KV++    LE+M ++     I  YN  ++ LC     +EA  L G+++        +T  
Sbjct: 679 KVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCY 736

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+  Y + G P  A++    M  R    DV     +   L    KV+EA  L+  +V +
Sbjct: 737 ALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVER 796

Query: 442 G 442
           G
Sbjct: 797 G 797


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 141/302 (46%), Gaps = 19/302 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP +    +L++ LCK   VD A  + +++      N    N   ++           PD
Sbjct: 337 QPNVVTFGILINHLCKFRRVDEALEVFEKM------NGGESNGFLVE-----------PD 379

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TYNT ID  CK     E   L E MR++   +  P   TY  +I    +   +E    
Sbjct: 380 VITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCM--PNTVTYNCLIDGYCKASMIEAARE 437

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M   G  P+V T   +++GMC  G++  A +F  EM  KG   + VTY   ++  C
Sbjct: 438 LFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFC 497

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
           +  N ++A+ L+  M+E GC P    Y  LIS   + G+ D A     +M + G + D+ 
Sbjct: 498 NVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIV 557

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           ++ V+I+G    +K++EA  +L+E+ N G+K     +++ +   S  GD    H+L   M
Sbjct: 558 SFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617

Query: 474 RK 475
            K
Sbjct: 618 VK 619



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 17/260 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL------------GM 219
           +P++   N L+D LCK G  +    + +R++++ +  PN  TYN L              
Sbjct: 377 EPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAAR 436

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  ++M + G  P+  T NT +D  CK   +  A + F  M+ KG       A TY  +I
Sbjct: 437 ELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGL---KGNAVTYTALI 493

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A    + +E+   L   M+ +GC PD   Y  ++ G+  AGK++ A   L +M   G+ 
Sbjct: 494 RAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFS 553

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PDIV++N  +   C     DEA  +   M   G  P   TYN LIS + + G+   A   
Sbjct: 554 PDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRL 613

Query: 400 WHEMDKRGCAQDVDTYCVMI 419
             +M K G    V TY  +I
Sbjct: 614 MKKMVKEGLVPTVVTYGALI 633



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 17/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM----------QT 221
           P     N L+D  CK  +++ A  +  ++ K+ V PN  T N L  GM          + 
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G   +  TY   I  FC    + +A +LF+ M   G    SP A  Y  +I  
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGC---SPDAIVYYTLISG 530

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q  +++    +L  M  +G  PD+ ++  ++ G C   K++EAY+ L+EM N G  PD
Sbjct: 531 LSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPD 590

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +       +   A RL  +M++ G  P+V TY  LI  Y   G  D A + + 
Sbjct: 591 GVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFR 650

Query: 402 EMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           +M        +   Y ++I+ L   ++V+ A  L++++  KG+K     F++    L   
Sbjct: 651 DMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEK 710

Query: 461 GDLGAIHKLSDHM 473
             L    +L D M
Sbjct: 711 NWLSKAFELMDRM 723



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 52/297 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +  LN L+D +CK G ++ A      ++ K +K NA TY  L             M+ 
Sbjct: 449 PNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMEL 508

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM++ G +PD   Y T I    +A  +  A+ +   M+  G    SP   ++ ++I  
Sbjct: 509 FDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGF---SPDIVSFNVLING 565

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTY---------------------KEVLEGM--- 317
             + ++++E + +L  M N+G  PD  TY                     K V EG+   
Sbjct: 566 FCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPT 625

Query: 318 -----------CLAGKVEEAYKFLEEMGNKG-YPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                      CL G ++EA K   +M +    PP+ V YN  +  LC     D AL L 
Sbjct: 626 VVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLM 685

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             M   G  P+  T+N +     E      AFE    M +  C  D  T  ++ + L
Sbjct: 686 DDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWL 742



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 119/308 (38%), Gaps = 64/308 (20%)

Query: 181 NLLLDALCKCGLVDYAETICKRV---KNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237
           N+L+D L + G VD A  +   +   K +  PN+NT +I+    L +  ++G A D    
Sbjct: 196 NILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIV-FSALSKRDKVGRAVDEEEI 254

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
              +  F +  +                    P +     +I  L ++ R +  + +L  
Sbjct: 255 VGLVSKFAEHEVF-------------------PNSIWLTQLISRLCRSGRTDRAWDVLHG 295

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++  G + + ++   +L  +  A + +     L EM      P++VT+   +  LC  + 
Sbjct: 296 LMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRR 355

Query: 358 GDEALRLYGRM------------------------IEVG-----------------CWPS 376
            DEAL ++ +M                         +VG                 C P+
Sbjct: 356 VDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPN 415

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TYN LI  Y +    + A E + +M+K G   +V T   ++DG+    ++  A     
Sbjct: 416 TVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFN 475

Query: 437 EVVNKGLK 444
           E+  KGLK
Sbjct: 476 EMQGKGLK 483


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 199/463 (42%), Gaps = 59/463 (12%)

Query: 67  NMEKALDSLGV-PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL 125
           N EKA +SL V P++   VV VL R + +   +  +F    +   + H  L Y  MID L
Sbjct: 27  NPEKA-NSLNVCPVSESHVVKVL-RQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKL 84

Query: 126 SSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVDVLLMILKQYTEKIKVKT 173
                +  +   V  +L  MK  N            K +   ++    LK +    +   
Sbjct: 85  G----RNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGC 140

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P +   NL+LDAL    L      +   +K++ ++PN  TYN+L              +
Sbjct: 141 EPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACK 200

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL------------------------ 256
            L EM   G  PD+ +Y T I + CK   V +A +L                        
Sbjct: 201 LLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRF 260

Query: 257 ---FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
              F+ M         P   +Y+ +I  L     +E   ++ G M   GC P+V T+  +
Sbjct: 261 KEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSL 320

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           ++G  + G+V +A      M  +G  P++V YN  +  LC + N DEA+ ++ +M +   
Sbjct: 321 IKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSI 380

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P+V TY+ +I  + + G+   A ETW++M   GC  +V  Y  M+D L   S  ++A  
Sbjct: 381 RPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFD 440

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           L++ +++ G       F++++  L   G +     + D M K+
Sbjct: 441 LIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKY 483



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 16/307 (5%)

Query: 168 KIKVKTQPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNI---------- 216
           ++ +K +P +   N L+  +CK C   +  + + + V   V PN  +Y+           
Sbjct: 235 ELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGN 294

Query: 217 --LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
             L +     M   G  P+  T+ + I  F     V +A  L+  M  +G    SP    
Sbjct: 295 VELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGV---SPNVVA 351

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L  +  M+E  S+   M      P+V+TY  ++ G   +G +  A +   +M 
Sbjct: 352 YNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMI 411

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           N G  P++V Y C + VLC     D+A  L   MI  GC P+V T+N  I      G  +
Sbjct: 412 NCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVE 471

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A     +M+K  C  ++ TY  ++DGLF  +   EAC L+ E+  + ++     +++ +
Sbjct: 472 WAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIM 531

Query: 455 MQLSVIG 461
              S  G
Sbjct: 532 YGFSFNG 538



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 52/304 (17%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           I+    P + A N L+  LC  G +D A ++  ++ K+ ++PN  TY+ +          
Sbjct: 341 IREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDL 400

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +T  +MI  G  P+   Y   +D  C+  M  +A DL + M + G     PT  T+
Sbjct: 401 VSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGC---PPTVITF 457

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
              I  L +  R+E   ++L  M    CLP++ TY E+L+G+  A    EA   + E+  
Sbjct: 458 NNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEE 517

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +    D VTYN  +     N    + L+L G+M+  G      T N  ++ Y +LG+   
Sbjct: 518 RKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKT 577

Query: 396 AFE--------------------------TW----------HEMDKRGCAQDVDTYCVMI 419
           A +                           W          HEM KRG   ++ T+ V++
Sbjct: 578 AIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLV 637

Query: 420 DGLF 423
            G F
Sbjct: 638 RGFF 641



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 148/339 (43%), Gaps = 23/339 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-------- 217
           E +     P + + + ++  L   G V+ +  +  R+     +PN  T+  L        
Sbjct: 269 EMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRG 328

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G+  L  MI+ G +P+   YNT I   C    + EA  ++  M  K S    P 
Sbjct: 329 RVGDAVGLWNL--MIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQME-KDSI--RPN 383

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY+ +I    ++  +         MIN GC P+V  Y  +++ +C     ++A+  ++
Sbjct: 384 VTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLID 443

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M + G PP ++T+N F+K LC     + A+ +  +M +  C P+++TYN L+   F   
Sbjct: 444 NMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRAN 503

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               A     E+++R    D  TY  ++ G       ++   LL +++  G+KL     +
Sbjct: 504 AFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVN 563

Query: 452 SYLMQLSVIGDLGAIHKLSDHM---RKFYNPVIARRLAL 487
           + +     +G +    K+ D++   ++F   +I   + L
Sbjct: 564 TTVNAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIIL 602



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 17/245 (6%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNI 216
           L+   + + + I    +P +     ++D LC+  + D A + I   + +   P   T+N 
Sbjct: 400 LVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNN 459

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
                         M  L++M +    P+  TYN  +D   +A    EA  L   +  + 
Sbjct: 460 FIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERK 519

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                    TY  ++     N   ++   LLG M+ +G   D  T    +   C  GKV+
Sbjct: 520 VEFD---CVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVK 576

Query: 325 EAYKFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            A K L+ +   K +  DI+T+   L  +C+    +EA+     M++ G +P++ T+N+L
Sbjct: 577 TAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVL 636

Query: 384 ISMYF 388
           +  +F
Sbjct: 637 VRGFF 641


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------ 217
           Y+E I  K  P +   N L+   C  G +  A  +   +  N V PN  T+NIL      
Sbjct: 217 YSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCK 276

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  MI+ G  P+  TY + +D +   + V +A  +F  +  +G T   P 
Sbjct: 277 EGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVT---PN 333

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y++MI  L +N  ++E   L   M      P+  TY  +++G+C +G++ + +  ++
Sbjct: 334 VHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLID 393

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+ N+G P +I+TYN  L  LC N   D+A+ L  +M + G  P + TY  L+    + G
Sbjct: 394 EINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNG 453

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               A   + ++  +G   ++  Y VMI+GL      +EA  LL ++ + G
Sbjct: 454 RLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNG 504



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 16/278 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL--GMQTLEEMIQMGH- 230
           P +   N+L+D LCK G V  A ++    +K  V+PN  TY  L  G   ++E+ +  H 
Sbjct: 262 PNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHV 321

Query: 231 ---------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                     P+  +Y+  I+  CK +MV EA  LF+ M  K  T   P   TY+ +I  
Sbjct: 322 FNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMT---PNTVTYSSLIDG 378

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+ + + L+  + N G   ++ TY  +L G+C   +V++A   L +M ++G  PD
Sbjct: 379 LCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPD 438

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TY   +  LC N    +A R+Y  ++  G   +++ Y ++I+   + G  D A     
Sbjct: 439 MSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLS 498

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           +M+  GC  D  TY  +I  LF  +K  +A  LL E++
Sbjct: 499 QMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMI 536



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 148/329 (44%), Gaps = 16/329 (4%)

Query: 165 YTEKIKVK-TQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----- 217
           +++++++K  QPE+   N+L++       +++A   + K +K   +P+  T N L     
Sbjct: 75  FSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLC 134

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   +   + +I+     D  +Y T I+  CK+     A  L    + +G  +  P
Sbjct: 135 LNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLR--KIEGLLLVRP 192

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y  +I +  ++  + + + L   MI     P+V T+  ++ G C+ G+++EA   L
Sbjct: 193 DVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLL 252

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM      P++ T+N  +  LC      +A  +   MI+ G  P+V TY  L+  YF +
Sbjct: 253 NEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLV 312

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
            E + A   ++ +  RG   +V +Y VMI+GL     V+EA  L +E+  K +      +
Sbjct: 313 KEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTY 372

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            S +  L   G +  +  L D +     P
Sbjct: 373 SSLIDGLCKSGRISDVWDLIDEINNRGQP 401



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK--VKPNANTYN------------ILGMQTLEEMIQM 228
           L++ LCK G    A  + ++++    V+P+   Y             I       EMI  
Sbjct: 164 LINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVK 223

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
              P+  T+N+ I  FC    + EA  L   M        +P   T+ I+I  L +   +
Sbjct: 224 KIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNV---NPNVYTFNILIDGLCKEGEV 280

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++  S+L  MI  G  P+V TY  +++G  L  +V +A      +  +G  P++ +Y+  
Sbjct: 281 KKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVM 340

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC NK  DEA++L+  M      P+  TY+ LI    + G     ++   E++ RG 
Sbjct: 341 INGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQ 400

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             ++ TY  +++GL    +V++A  LL ++ ++G++
Sbjct: 401 PANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQ 436



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 1/196 (0%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P    +  ++ +LV+ +  +   S    M   G  P++ T+  ++       ++  A+ 
Sbjct: 50  TPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFS 109

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            + ++   GY PD VT N  L+ LC N    EAL  +  +I         +Y  LI+   
Sbjct: 110 MVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLC 169

Query: 389 ELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           + GE   A +   +++     + DV  Y  +ID       V +A  L  E++ K +    
Sbjct: 170 KSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNV 229

Query: 448 RKFDSYLMQLSVIGDL 463
             F+S +    ++G L
Sbjct: 230 VTFNSLIYGFCIVGQL 245


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 155/362 (42%), Gaps = 44/362 (12%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  +FF WA  + NY H+   Y  +I  L   +   + ++++  M         V  P+ 
Sbjct: 105 VKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEM---------VRSPIC 155

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN 215
           V+  +                  L+ ++  L    ++  A TI  ++K  K +P A  YN
Sbjct: 156 VVTPM-----------------ELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYN 198

Query: 216 ILGMQTLEE------------MIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            + +  + E            M   GH  PD  TY+  I  FCK      A  L   M+ 
Sbjct: 199 SMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKE 258

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     PTAK Y ++I    + D +    SL   M    C PDV TY E++ G+  AG+
Sbjct: 259 NGM---QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGR 315

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EAY F  EM  +   PD V  N  +  L      D+ L+L+  M    C P+V TYN 
Sbjct: 316 IDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNT 375

Query: 383 LISMYFELGEPDGAFETWHE-MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +I   FE         +W E M   G +    TY ++IDG    +++E+A  LLEE+  K
Sbjct: 376 IIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEK 435

Query: 442 GL 443
           G 
Sbjct: 436 GF 437



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 17/304 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------ 217
           Y E  +   +P+   +N +++ L K G +D    + + +  +   PN  TYN +      
Sbjct: 323 YHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFE 382

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                       E M   G +P  FTY+  ID FCK   + +A  L E M  KG     P
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF---PP 439

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y  +I AL +  R +    L   +  +        Y  +++ +  AG++++A    
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLF 499

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           +EM   G  P++  YN  +  L      DEAL    +M E GC P + +YN++++   + 
Sbjct: 500 DEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKT 559

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G P  A E    M       D  +Y  ++  L      EEA  L++E+   G +     +
Sbjct: 560 GGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITY 619

Query: 451 DSYL 454
            S L
Sbjct: 620 SSIL 623



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 15/228 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P+  TY+IL             M  LEEM + G  P    Y + ID   KA+    A 
Sbjct: 402 ISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +LF+ ++       S +A+ YA+MI  L +  R+++  +L   M   GC P+V  Y  ++
Sbjct: 462 ELFQELK---ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALM 518

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G+  A  ++EA   + +M   G  PDI +YN  L  L        A+ +   M      
Sbjct: 519 SGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIK 578

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           P   +YN ++S     G  + A E   EM+  G   D+ TY  +++ +
Sbjct: 579 PDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 7/175 (4%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEA 361
           C P    Y  ++  +   G+ E+ ++   EM N+G+  PD VTY+  +   C     D A
Sbjct: 190 CQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSA 249

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           +RL   M E G  P+ + Y M+IS++F+L    GA   + EM    C  DV TY  +I G
Sbjct: 250 IRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRG 309

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           L    +++EA     E+  +  K      D+ +M  ++I  LG   +L D ++ F
Sbjct: 310 LGKAGRIDEAYHFYHEMQREDCKP-----DTVVMN-NMINFLGKAGRLDDGLKLF 358


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           K + E I     P++  LN  +D + K G       + + +K++   P+  +Y+IL    
Sbjct: 533 KIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGL 592

Query: 218 -----GMQTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  +T E    M + G   D   YNT ID FCK+  V +A  L E M+TKG     
Sbjct: 593 VKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGR---Q 649

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     ++G   +V  Y  +++G    G+++EAY  
Sbjct: 650 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLI 709

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +EE+  KG  P++ T+NC L  L   +  +EAL  +  M  +   P+  TY++LI+    
Sbjct: 710 MEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCR 769

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G   +  TY  MI GL     + EA  L E     G
Sbjct: 770 VRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANG 822



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 142/312 (45%), Gaps = 15/312 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + A N +L  L K G +  A    + +K    PN +TYN+L              +  
Sbjct: 371 PSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVR 430

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M + G  P+  T N  ID  CKA+ + EA  +FE M  K   I SP   T+  +I  L
Sbjct: 431 DAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHK---ICSPDEVTFCSLIDGL 487

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R+++ + L   M++S  +P+   Y  +++     G+ E+ +K  +EM ++G  PD+
Sbjct: 488 GKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDL 547

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
              N ++  +       +   L+  +   G  P V +Y++LI    + G     +E ++ 
Sbjct: 548 RLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYA 607

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M ++GC  D   Y   IDG     KV +A  LLEE+  KG +     + S +  L+ I  
Sbjct: 608 MKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDR 667

Query: 463 LGAIHKLSDHMR 474
           L   + L +  +
Sbjct: 668 LDEAYMLFEEAK 679



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 16/310 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-----GMQ 220
           E++K    P ++  N+L+D LCK G V+ A  +   +K   + PN  T NI+       +
Sbjct: 397 EEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAK 456

Query: 221 TLEEMIQ----MGH---APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
            L+E       M H   +PD  T+ + ID   K   V +A  L+E M         P A 
Sbjct: 457 KLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKI---PNAV 513

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  +I +  +  R E+   +   MI+ GC PD+      ++ +  AG+  +     EE+
Sbjct: 514 VYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEI 573

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G+ PD+++Y+  +  L       E   L+  M E GC      YN  I  + + G+ 
Sbjct: 574 KSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKV 633

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A++   EM  +G    V TY  +IDGL    +++EA  L EE  + GL+L    + S 
Sbjct: 634 NKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSL 693

Query: 454 LMQLSVIGDL 463
           +     +G +
Sbjct: 694 IDGFGKVGRI 703



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 165/407 (40%), Gaps = 78/407 (19%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175
           +  N+MID L     KAK+    CS+ + M  N+K+  P +V    L             
Sbjct: 443 MTVNIMIDRLC----KAKKLDEACSIFEGM--NHKICSPDEVTFCSL------------- 483

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------------GMQTL 222
                   +D L K G VD A  + +++ +  K PNA  Y  L            G +  
Sbjct: 484 --------IDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIF 535

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +EMI  G +PD    N  +D   KA    +   LFE ++++G     P   +Y+I+I  L
Sbjct: 536 KEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFI---PDVMSYSILIHGL 592

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V+     E + L   M   GC+ D   Y   ++G C +GKV +AY+ LEEM  KG  P +
Sbjct: 593 VKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTV 652

Query: 343 VTYNCFLKVLCDNKNGDEALRLY-------------------------GRMIEV------ 371
           VTY   +  L      DEA  L+                         GR+ E       
Sbjct: 653 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712

Query: 372 ----GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
               G  P+V T+N L+    +  E + A   +  M       +  TY ++I+GL    K
Sbjct: 713 LMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRK 772

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
             +A    +E+  +GLK     + + +  L+  G++     L +  +
Sbjct: 773 FNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFK 819



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 168/433 (38%), Gaps = 60/433 (13%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           + + V DV K    I+++ N   ++E AL        TD V+GVL+R + +   A  +F 
Sbjct: 62  AKEVVDDVCK----ILESGNWGPDVENALSLFVESPKTDLVIGVLRRAK-DVNQAISYFR 116

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
           W   + + A  P AY+                    S+L  M +N K             
Sbjct: 117 WTERKTDQALCPEAYD--------------------SLLLVMAKNVKF------------ 144

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLE 223
            Y E+I              L  +   G     +T  + + + +K N       G   ++
Sbjct: 145 DYFEQI--------------LGEMSIAGFGPSTKTCIELILSCIKSNKLRE---GFDLIQ 187

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M +    P    Y T I      +       LF  M+  G  +S      +  +I    
Sbjct: 188 CMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVS---VHLFTTVIRVFA 244

Query: 284 QNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           +  R++   SLL  M  S CL  D+  Y   ++    AGKV+ A+KF  E+ + G  PD 
Sbjct: 245 REGRLDAALSLLDEM-KSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDD 303

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   + VLC     DEA+ ++ +M +    P    YN +I  Y   G+ D A+     
Sbjct: 304 VTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLER 363

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
              RGC   V  Y  ++  L    ++ EA    EE + K        ++  +  L   G+
Sbjct: 364 QKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEE-MKKDAAPNLSTYNVLIDMLCKAGE 422

Query: 463 LGAIHKLSDHMRK 475
           + A  K+ D M++
Sbjct: 423 VEAAFKVRDAMKE 435



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTY-----------NILG 218
           +K  P     ++L++ LC+    + A    + + K  +KPN  TY           NI  
Sbjct: 751 LKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAE 810

Query: 219 MQTLEEMIQM-GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +L E  +  G  PD+ +YN  I+    +R   EA  +FE  R KG  I + T     I
Sbjct: 811 ASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKT----CI 866

Query: 278 MIVALVQNDRMEECFSLLGHMI 299
            ++  +Q D   E  +++G ++
Sbjct: 867 ALLDALQKDECLEQAAIVGAVL 888


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 189/441 (42%), Gaps = 53/441 (12%)

Query: 87  VLQRFQFEE--KIAFRFFMWAGHQDNYAHEPLAYNLMIDILS------STKYKAKQFRLV 138
           V++R + E    +A  FF    + + + H PL + +MI  L+      S +Y  +Q +L 
Sbjct: 46  VVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQ 105

Query: 139 ---CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195
              CS  D       V+  V +    ++ +    +    P +   N +LD L     +  
Sbjct: 106 GFHCSE-DLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 164

Query: 196 AETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
              + + +K +  +PN  TYN+L              + L EM   G  PD  +Y T I 
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224

Query: 243 TFCKARMVTEAADL---------------------------FEFMRTKGSTISSPTAKTY 275
           + C+  +V E  +L                           FE MR       SP   +Y
Sbjct: 225 SMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISY 284

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L  + ++E  FS L  M+  GC P++ T   +++G  L G   +A     +M  
Sbjct: 285 STLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIR 344

Query: 336 K-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  P++V YN  ++  C + N  +A+ ++  M E+GC P+++TY  LI+ + + G  D
Sbjct: 345 GFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLD 404

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           GA   W++M   GC  +V  Y  M++ L   SK +EA  L+E +  +        F++++
Sbjct: 405 GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFI 464

Query: 455 MQLSVIGDLGAIHKLSDHMRK 475
             L   G L    K+   M +
Sbjct: 465 KGLCDAGRLDWAEKVFRQMEQ 485



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 137/326 (42%), Gaps = 50/326 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P+  +   ++ ++C+ GLV     + +R +    P  + YN L              + +
Sbjct: 214 PDAVSYTTVISSMCEVGLVKEGRELAERFE----PVVSVYNALINGLCKEHDYKGAFELM 269

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS-----TISS-------- 269
            EM++ G +P+  +Y+T I+  C +  +  A      M  +G      T+SS        
Sbjct: 270 REMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLR 329

Query: 270 --------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                               P    Y  ++     +  + +  S+  HM   GC P++ T
Sbjct: 330 GTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRT 389

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ G    G ++ A     +M   G  P++V Y   ++ LC +    EA  L   M 
Sbjct: 390 YGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMS 449

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKV 428
           +  C PSV T+N  I    + G  D A + + +M+++  C  ++ TY  ++DGL   +++
Sbjct: 450 KENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRI 509

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYL 454
           EEA  L  E+  +G++     +++ L
Sbjct: 510 EEAYGLTREIFMRGVEWSSSTYNTLL 535



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 131/309 (42%), Gaps = 18/309 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           QP + A N L+   C  G +  A ++   ++     PN  TY  L             + 
Sbjct: 349 QPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVY 408

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M+  G  P+   Y   ++  C+     EA  L E M  +    S PT   +   + 
Sbjct: 409 IWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 468

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              + D  E+ F  +       C P++ TY E+L+G+  A ++EEAY    E+  +G   
Sbjct: 469 DAGRLDWAEKVFRQMEQ--QHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEW 526

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
              TYN  L   C+      AL+L G+M+  G  P   T NM+I  Y + G+ + A +  
Sbjct: 527 SSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML 586

Query: 401 H--EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
                 +R    DV +Y  +I GL   +  E+   LLE +++ G+ +P     S L+   
Sbjct: 587 DLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGI-VPSIATWSVLINCF 645

Query: 459 VIGDLGAIH 467
           ++ D+   H
Sbjct: 646 ILDDIVRAH 654



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 28/222 (12%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K    P +   N  +  LC  G +D+AE +                        +M Q  
Sbjct: 450 KENCAPSVPTFNAFIKGLCDAGRLDWAEKV----------------------FRQMEQQH 487

Query: 230 HAPDNF-TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
             P N  TYN  +D   KA  + EA  L   +  +G   SS    TY  ++         
Sbjct: 488 RCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSS---STYNTLLHGSCNAGLP 544

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE--EMGNKGYPPDIVTYN 346
                L+G M+  G  PD  T   ++   C  GK E A + L+    G + + PD+++Y 
Sbjct: 545 GIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYT 604

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +  LC +   ++ + L  RMI  G  PS+ T+++LI+ + 
Sbjct: 605 NVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFI 646


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM 219
           K Y E +     P++  LN  +D + K G V+    + + +K + + P+  +Y+IL  G+
Sbjct: 538 KIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGL 597

Query: 220 ----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     +   EM + G   D   YNT ID FCK+  V +A  L E M+TKG     
Sbjct: 598 VKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGL---Q 654

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  ++  L + DR++E + L     + G   +V  Y  +++G    G+++EAY  
Sbjct: 655 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLI 714

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LEE+  KG  P+  T+NC L  L   +  DEA   +  M  + C P+  TY+++I+    
Sbjct: 715 LEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCM 774

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G   +  TY  MI GL     V EA  L +     G
Sbjct: 775 IRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASG 827



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 206/474 (43%), Gaps = 74/474 (15%)

Query: 31  GKVPSLVCKVFDESSDSVSDVAK-LYE--AIIDNSNAYDNMEKALDSLGVPLTTDSVVGV 87
           GKV   +   ++++   V  + K +Y+   +++N     ++E+AL+        + +VGV
Sbjct: 47  GKVSPFMNDNYEKNEAKVEGMRKTVYDLCGVLENGLWGPDVEEALNVFDEMSQPEVIVGV 106

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTK------------------ 129
           ++R + +  +AF++F W   +   AH P  YN  + +++ T+                  
Sbjct: 107 MKRLK-DVNVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFG 165

Query: 130 -------------YKAKQFRLVCSMLDYMKRNNKVFVPV-----------------DVLL 159
                         K+ + +    +++ M++    F P                  D +L
Sbjct: 166 LSNHVSVELVASFVKSHKLKEAFGVIEMMRKFK--FRPAFSAYTTLIGALSAANRPDPML 223

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNI-- 216
            +  Q  E   +  +  ++    L+    + G +D A ++   +K N    +   YN+  
Sbjct: 224 TLFHQMQE---IGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCI 280

Query: 217 ----------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                     +  +   EM   G  PD+ TY T I   CKAR + EA +LFE +    S 
Sbjct: 281 DCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSV 340

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P    Y  MI+      + +E +SLL      GC+P V  Y  +L  +   GKVEEA
Sbjct: 341 ---PCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEA 397

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +  +EM  +   P++ TYN  + +LC     + AL++   M E G +P++ T N++I  
Sbjct: 398 LRIHDEM-RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDR 456

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             +  + D A   +  +D + C+ D  T+C +IDGL    +V++A  L E++++
Sbjct: 457 LCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLD 510



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 153/312 (49%), Gaps = 15/312 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P + A N +L  L + G V+ A  I   ++    PN  TYNIL             ++  
Sbjct: 376 PSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQ 435

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M + G  P+  T N  ID  CKA+ + EA  +F  +  K   + SP ++T+  +I  L
Sbjct: 436 DTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHK---VCSPDSRTFCSLIDGL 492

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R+++ +SL   M++S  +P+V  Y  +++     G+ E+ +K  +EM ++G  PD+
Sbjct: 493 GRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDL 552

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +  N ++  +      ++   L+  +   G  P V++Y++LI    + G     ++ ++E
Sbjct: 553 MLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYE 612

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M ++G   DV  Y  +IDG     KV++A  LLEE+  KGL+     + S +  L+ I  
Sbjct: 613 MKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDR 672

Query: 463 LGAIHKLSDHMR 474
           L   + L +  +
Sbjct: 673 LDEAYMLFEEAK 684



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 16/272 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQTL---------- 222
           ++ A N ++D  CK G VD A  + + +K K ++P   TY   + G+  +          
Sbjct: 621 DVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLF 680

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EE   +G   +   Y++ ID F K   + EA  + E +  KG T   P + T+  ++ AL
Sbjct: 681 EEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLT---PNSYTWNCLLDAL 737

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V+ + ++E      +M N  C P+  TY  ++ G+C+  K  +A+ F +EM  +G  P+ 
Sbjct: 738 VKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNN 797

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +TY   +  L    N  EA  L+ R    G  P    YN +I       +   A+  + E
Sbjct: 798 ITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEE 857

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
              +GC  +  T  V++D L     +E+A  +
Sbjct: 858 TRLKGCRVNSKTCVVLLDALHKADCLEQAAIV 889



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 109/255 (42%), Gaps = 7/255 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +E   Q  H P+   YN  +    + R +     + E M   G  +S+  +     ++ +
Sbjct: 123 VERKTQQAHCPE--VYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVE---LVAS 177

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            V++ +++E F ++  M      P  S Y  ++  +  A + +       +M   GY  +
Sbjct: 178 FVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEAN 237

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +  +   ++V       D AL L   M        +  YN+ I  + ++G+ D A++ +H
Sbjct: 238 VHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFH 297

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-VNKGLKLPYRKFDSYLMQLSVI 460
           EM  +G   D  TY  +I  L    +++EA  L EE+ +N+ +   Y  +++ +M     
Sbjct: 298 EMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVY-AYNTMIMGYGSA 356

Query: 461 GDLGAIHKLSDHMRK 475
           G     + L +  ++
Sbjct: 357 GKFDEAYSLLERQKR 371


>gi|226495005|ref|NP_001148062.1| GTP binding protein [Zea mays]
 gi|195615570|gb|ACG29615.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 197/453 (43%), Gaps = 45/453 (9%)

Query: 62  SNAYDN--MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYN 119
           S + DN  +   L    V +  D ++ VLQ+ +   ++A  FF WA     YAH   AY 
Sbjct: 89  STSADNADLSGVLHQFMVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPGYAHGSRAYT 148

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINA 179
            M+DIL   K K +  R +   +   +R  +V V   +  ++L +Y    KV+   E+  
Sbjct: 149 EMLDILGRMK-KVRHMRQLFDEIPEERR--QVVVTNKMFAVLLNRYAGAHKVQEAIEVFY 205

Query: 180 L-------------NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
           L              +LL +LC+   V+ AE + +  K++      ++NI+         
Sbjct: 206 LRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWCVKGS 265

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                +   ++I      D FT+ T I+   K   ++ A  LF+ M  KG    +P    
Sbjct: 266 LRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGI---NPDVAI 322

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
              +I  L    ++ E   + G M +  C  DV+TY  +++ MC   ++E+ Y+ L++M 
Sbjct: 323 CNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDME 382

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P+  TY+  LK     +   + + L  RM   GC      YN+++++Y +     
Sbjct: 383 AKGCSPNNRTYSYILKT---TEKPKDVIALMQRMERSGCKLDSDMYNLILNLYIKWKYEK 439

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL-KLPYRKFDSY 453
           G  + W EM++RG   D  ++ +M+ GL    K++EA      + ++G+   P  K  + 
Sbjct: 440 GMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRTKILAK 499

Query: 454 LMQLSVIG--------DLGAIHKLSDHMRKFYN 478
            M +   G         +   H   DH  + +N
Sbjct: 500 AMHMKKDGSAAEDDSASMAGKHLKLDHRSRLFN 532


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 152/317 (47%), Gaps = 21/317 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+      L+  LC  G + D      K +    +PN  TY  L          
Sbjct: 129 LKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 188

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M Q    PD   Y + ID+ CK R VTEA +LF  M  +G    SP   TY
Sbjct: 189 NAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGI---SPDIFTY 245

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I +L      +   +LL  MINS  +PDV  +  V++ +C  GK+ EA+  ++ M  
Sbjct: 246 TSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMII 305

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P++VTYN  +   C     DEA++++  M+  G  P+V +YN LI+ Y ++   D 
Sbjct: 306 RGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDK 365

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A   + EM ++    +  TY  ++ GL    ++++A  L  E+V  G ++P    YR   
Sbjct: 366 ATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHG-QIPDLATYRILL 424

Query: 452 SYLMQLSVIGDLGAIHK 468
            YL + S + +  A+ K
Sbjct: 425 DYLCKKSHLDEAMALLK 441



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 16/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           + I  K  P++   + ++DALCK G +  A  +    +   V+PN  TYN L        
Sbjct: 267 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 326

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M+  G+AP+  +YNT I+ +CK + + +A  LFE M  K      P   
Sbjct: 327 EMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI---PNTV 383

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  ++  L    R+++  +L   M+  G +PD++TY+ +L+ +C    ++EA   L+ +
Sbjct: 384 TYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTI 443

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 PDI  Y   +  +C     + A  ++  +   G  P+V+TY ++I+     G  
Sbjct: 444 EGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLL 503

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           D A + + EMD  GC+ D  TY  +  GL    +   A  LL+E++ +G  
Sbjct: 504 DEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 554



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 132/308 (42%), Gaps = 11/308 (3%)

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLEEM 225
           K+K+ T+P  +         C   L  Y  ++     N+    +  +N L   + +   M
Sbjct: 5   KMKMLTRPSSSPPGF---GTCVLSLPPYFSSLSH---NRFHSKSLNFNTLDDALSSFNRM 58

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           + M   P    +N  + +  K +       L   M + G     P   T  I+I +    
Sbjct: 59  LHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGI---PPDVYTLNILINSFCHL 115

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +R    FS+L  ++  G  PD +T+  ++ G+C+ GK+ +A    ++M  +G+ P++VTY
Sbjct: 116 NRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTY 175

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  LC   N + A+RL   M +  C P V  Y  +I    +  +   AF  + +M  
Sbjct: 176 GTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVG 235

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           +G + D+ TY  +I  L +  + +    LL +++N  +      F + +  L   G +  
Sbjct: 236 QGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITE 295

Query: 466 IHKLSDHM 473
            H + D M
Sbjct: 296 AHDVVDMM 303



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 16/195 (8%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P     N L+  LC  G L D      + V +   P+  TY IL             M  
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 439

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ +      PD   Y   ID  C+A  +  A D+F  + +KG     P  +TY IMI  
Sbjct: 440 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGL---RPNVRTYTIMING 496

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   ++E   L   M  +GC PD  TY  + +G+    +   A + L+EM  +G+  D
Sbjct: 497 LCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSAD 556

Query: 342 IVTYNCFLKVLCDNK 356
           + T    +++LCD+K
Sbjct: 557 VSTTTLLVEMLCDDK 571



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 66/153 (43%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A      M +   PP  V +N  L  +   K       L  +M   G  P V T N+
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ +  L  P  AF    ++ K G   D  T+  +I GL    K+ +A  L ++++ +G
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +     + + +  L  +G+  A  +L   M +
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ 200


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y + I     P++   + L++ LCK GL   A  +   +  K  KPN NTY IL      
Sbjct: 370 YDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCK 429

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L EM+  G + +   YN  I   CK   + EA D+F  M +KG     P 
Sbjct: 430 KGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGC---KPD 486

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L + D ME+  +L   M+  G + +  T+  ++      G+++EA K + 
Sbjct: 487 IFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVN 546

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  +G P D +TYN  +K LC     ++ L L+  MI  G  PS+ T N+LI+ +   G
Sbjct: 547 DMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAG 606

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   A E   +M  RG + D+ TY  +I+GL    +++EA  L E++  +G++
Sbjct: 607 KVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQ 659



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 179/428 (41%), Gaps = 75/428 (17%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR 147
           L     + + +   F WAG Q  Y H    Y L+ID L +    A  F+++  +L  MK 
Sbjct: 77  LLELPLDVETSMEIFKWAGAQKGYCHSFSVYYLLIDKLGA----AAGFKVIDRLLLQMKE 132

Query: 148 NNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
              VF   + L +++ +Y  +  +  Q    A  LLLD              C       
Sbjct: 133 EGIVFR--ESLFILIMKYYGRAGLPGQ----ATRLLLDM---------KGVYC------C 171

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +P+  +YN++                  +M+  G +P+++T+   +   C    V  A  
Sbjct: 172 EPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACL 231

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L   M   G     P +  Y  +I AL + DR++E   LL  M   GC PDV+T+  V+ 
Sbjct: 232 LLRDMTKHGCV---PNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIY 288

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL----------- 364
           G C   +V E  K ++ M  KG+ P+ +TY   +  LC     DEA  L           
Sbjct: 289 GFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVH 348

Query: 365 ---------------------YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
                                Y +MI  G  P V T++ L++   + G    A E  ++M
Sbjct: 349 FNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDM 408

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           D +GC  +++TY ++IDG     ++EEA  +L E++ KG  L    +++    +S +   
Sbjct: 409 DAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNAL---ISALCKH 465

Query: 464 GAIHKLSD 471
           G IH+  D
Sbjct: 466 GKIHEALD 473



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 132/297 (44%), Gaps = 27/297 (9%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           MILK +T        P       L+  LCK   +D A+ +  +V     PN   +N L  
Sbjct: 306 MILKGFT--------PNDMTYGYLMHGLCKTCRIDEAQALLSKVPG---PNVVHFNTLVN 354

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                           ++MI  G+ PD FT++T ++  CK  +   A +L   M  KG  
Sbjct: 355 GFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGC- 413

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY I+I    +  ++EE   +L  M+  G   +   Y  ++  +C  GK+ EA
Sbjct: 414 --KPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEA 471

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
                EM +KG  PDI T+N  +  LC     ++AL LY  M+  G   +  T+N LI  
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHA 531

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   GE   A +  ++M  RGC  D  TY  +I  L     VE+   L EE++ KGL
Sbjct: 532 FLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGL 588



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 121/283 (42%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P +N   +L+D  CK G ++ A  I + +  K    N   YN L             + 
Sbjct: 414 KPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALD 473

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM   G  PD FT+N+ I   C+   + +A  L+  M  +G   +S T  T   +I 
Sbjct: 474 MFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNT---LIH 530

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A ++   ++E   L+  M+  GC  D  TY  +++ +C  G VE+     EEM  KG  P
Sbjct: 531 AFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTP 590

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            I+T N  +   C       AL     MI  G  P + TYN LI+   + G    A   +
Sbjct: 591 SIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLF 650

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++   G   D  TY  +I  L      ++ACFLL   V  G 
Sbjct: 651 EKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGF 693



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 16/254 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL--- 217
           L  + E      +P+I   N L+  LC+   ++ A  + +  V   V  N+ T+N L   
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHA 531

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     ++ + +M+  G   D  TYN  I   CK   V +   LFE M  KG T  
Sbjct: 532 FLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLT-- 589

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P+  T  I+I       ++      +  MI+ G  PD+ TY  ++ G+C  G+++EA  
Sbjct: 590 -PSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALN 648

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E++  +G  PD +TYN  +  LC     D+A  L  R +E G  P+  T+N+L+  + 
Sbjct: 649 LFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFG 708

Query: 389 ELGEPDGAFETWHE 402
           +    +G   T+ +
Sbjct: 709 KQSNSEGQTITYAQ 722



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 1/155 (0%)

Query: 320 AGKVEEAYKFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
           AG   +A + L +M G     P   +YN  L VL        A  ++  M+  G  P+  
Sbjct: 152 AGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDY 211

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           T+ +++     + E D A     +M K GC  +   Y  +ID L    +V+EA  LLEE+
Sbjct: 212 TFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEM 271

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              G       F++ +     +  +    KL D M
Sbjct: 272 FLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRM 306


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 144/296 (48%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEE--------- 224
           P++   N L+  +CK G  + A E + + +  +  PN  TYN L     +E         
Sbjct: 296 PDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDL 355

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              ++  G  PD  T+NT I   C ++    A ++FE M+ KG     P   TY+I+I +
Sbjct: 356 ARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGC---KPDEFTYSILIDS 412

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R++E   LL  M +SGC  +   Y  +++G+C + ++E+A +  ++M   G    
Sbjct: 413 LCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRS 472

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +  LC NK  +EA +L  +MI  G  P   TYN L++ +  +G+ + A +   
Sbjct: 473 SVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQ 532

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            M   GC  D+ TY  +I GL    +V+ A  LL  V  KG+ L    ++  +  L
Sbjct: 533 TMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQAL 588



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 146/298 (48%), Gaps = 16/298 (5%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEM 225
           ++ +L++  CK G V+ A      V  +   P+  T+N L             +  ++ M
Sbjct: 230 SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFM 289

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           I+ G  PD +TYN+ I   CK     +A ++ + M  +     SP   TY  +I AL + 
Sbjct: 290 IEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILREC---SPNTVTYNTLISALCKE 346

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           + +E    L   +++ G LPDV T+  +++G+CL+   + A +  EEM NKG  PD  TY
Sbjct: 347 NEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTY 406

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           +  +  LC  +   EAL L   M   GC  +   YN LI    +    + A E + +M+ 
Sbjct: 407 SILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMEL 466

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            G ++   TY  +IDGL    +VEEA  L+++++ +GLK     ++S L     +GD+
Sbjct: 467 LGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDI 524



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 125/261 (47%), Gaps = 17/261 (6%)

Query: 197 ETICKRVKNKV--KPNANTYNILGMQTLEE------------MIQMGHAPDNFTYNTAID 242
           E + K ++N++  KP+ N YNI     +E+            M+  G   D  T+N  I 
Sbjct: 107 ENLLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIK 166

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             CKA  +  A  + E M   G     P   T+  ++   ++   +     +   M+  G
Sbjct: 167 ALCKAHQLRPAILMLEEMANHGL---KPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYG 223

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           CL    + K ++ G C  G+VEEA +F+ E+  +G+ PD VT+N  +   C   N ++AL
Sbjct: 224 CLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDAL 283

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +   MIE G  P V TYN LIS   +LGE + A E   +M  R C+ +  TY  +I  L
Sbjct: 284 DIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISAL 343

Query: 423 FDCSKVEEACFLLEEVVNKGL 443
              +++E A  L   +V+KGL
Sbjct: 344 CKENEIEAATDLARILVSKGL 364



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 131/290 (45%), Gaps = 17/290 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L+  LC     D A  + + +KNK  KP+  TY+IL             +  
Sbjct: 366 PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALML 425

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G A +   YNT ID  CK+R + +A ++F+ M   G + SS    TY  +I  
Sbjct: 426 LKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSS---VTYNTLIDG 482

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +N R+EE   L+  MI  G  PD  TY  +L   C  G +E+A   ++ M + G  PD
Sbjct: 483 LCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPD 542

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I TY   +  LC     D A +L   +   G   +   YN +I   F           + 
Sbjct: 543 IFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFR 602

Query: 402 EMDKRGCAQDVDTYCVMIDGLFD-CSKVEEACFLLEEVVNKGLKLPYRKF 450
           EM ++    D  T+ ++  GL +    ++EA     E++ KG+   +  F
Sbjct: 603 EMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSF 652



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 16/280 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P     N L+ ALCK   ++ A  + + + +K + P+  T+N L             M+ 
Sbjct: 331 PNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEM 390

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM   G  PD FTY+  ID+ C  R + EA  L + M + G    +  A  Y  +I  
Sbjct: 391 FEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGC---ARNAVVYNTLIDG 447

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+E+   +   M   G      TY  +++G+C   +VEEA + +++M  +G  PD
Sbjct: 448 LCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPD 507

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  L   C   + ++A  +   M   GC P + TY  LI      G  D A +   
Sbjct: 508 KFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLR 567

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +  +G       Y  +I  LF   + +E   L  E++ K
Sbjct: 568 SVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEK 607



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 118/242 (48%), Gaps = 5/242 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+++   G  P+  T+ T I +F       E  +L + +  +      P    Y I + A
Sbjct: 78  LKQLKSSGSIPNATTFATLIQSFTNFH---EIENLLKILENELGF--KPDTNFYNIALNA 132

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV++++++    L   M+N G + DVST+  +++ +C A ++  A   LEEM N G  PD
Sbjct: 133 LVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPD 192

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+   ++   +  + + AL++  +M+  GC  +  +  +L++ + + G  + A     
Sbjct: 193 EITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVL 252

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           E+ + G + D  T+  +++G      V +A  +++ ++ KG       ++S +  +  +G
Sbjct: 253 EVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLG 312

Query: 462 DL 463
           + 
Sbjct: 313 EF 314



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D LCK   V+ A  +  + +   +KP+  TYN L                ++ M  
Sbjct: 477 NTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMAS 536

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD FTY T I   C+A  V  A+ L   ++ KG  +   T   Y  +I AL    R
Sbjct: 537 NGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVL---TPHAYNPVIQALFMRKR 593

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMC-LAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +E   L   M+     PD  T+K V  G+C   G ++EA  F  EM  KG  P+  ++ 
Sbjct: 594 TKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFG 653

Query: 347 CFLKVLCDNKNGDEALRLYGRMIE 370
              + LC     D  + L   ++E
Sbjct: 654 FLAEGLCSLSMEDTLIELINMVME 677



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 3/216 (1%)

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
           S+ S P A T+A +I +      +E    +L + +  G  PD + Y   L  +    K++
Sbjct: 83  SSGSIPNATTFATLIQSFTNFHEIENLLKILENEL--GFKPDTNFYNIALNALVEDNKLK 140

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                  +M N+G   D+ T+N  +K LC       A+ +   M   G  P   T+  L+
Sbjct: 141 LVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLM 200

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + E G+ +GA +   +M   GC     +  V+++G     +VEEA   + EV  +G  
Sbjct: 201 QGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFS 260

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
                F+S +     IG++     + D M  K ++P
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDP 296


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 155/327 (47%), Gaps = 16/327 (4%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPN 210
           +  V+ L  +LK   E  +   +P     N ++  LCK G V  AE + + +KN ++ P+
Sbjct: 297 YCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPD 356

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
              Y  L              +  +EM +    PD  TY + I   C+A  V EA  LF 
Sbjct: 357 NVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFS 416

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M +KG     P   TY  +I    +   M+E FSL   M+  G  P+V TY  +++G+C
Sbjct: 417 EMLSKGL---KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLC 473

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             G+V+ A + L EM  KG  P++ TYN  +  LC   N ++A++L   M   G +P   
Sbjct: 474 KCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTI 533

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  ++  Y ++GE   A E    M  +G    + T+ V+++G      +E+   L++ +
Sbjct: 534 TYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWM 593

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           ++KG+      F+S + Q  +  ++ A
Sbjct: 594 LDKGIMPNATTFNSLMKQYCIRNNMRA 620



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 169/397 (42%), Gaps = 53/397 (13%)

Query: 92  QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY------- 144
           +F E++ + +  W  H       PL +++   +L       +  +L   +L+Y       
Sbjct: 165 RFTERLIYTYKDWGAH-------PLVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVD 217

Query: 145 -----MKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
                + R +  F  +     + ++Y+E   V       + N++L  LC+ G V  A ++
Sbjct: 218 SCNLFLARLSNSFDGIRTAFRVFREYSE---VGVCWNTVSYNIILHLLCQLGKVKEAHSL 274

Query: 200 CKRVKNKVKPNANTYNILGMQTLEEMIQM---GHAPDNFTYNTAIDTFCKARMVTEAADL 256
                                    +IQM   G+ PD  +Y+  +D +C+   + +   L
Sbjct: 275 -------------------------LIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKL 309

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            E ++ KG     P   TY  +I  L +  R+ E   +L  M N    PD   Y  ++ G
Sbjct: 310 MEELQRKGL---KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISG 366

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              +G V   YK  +EM  K   PD VTY   +  LC      EA +L+  M+  G  P 
Sbjct: 367 FGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPD 426

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TY  LI  Y + GE   AF   ++M ++G   +V TY  ++DGL  C +V+ A  LL 
Sbjct: 427 EVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLH 486

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+  KGL+     +++ +  L  +G++    KL + M
Sbjct: 487 EMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +     L+D LCKCG VD A  +   +  K ++PN  TYN L             ++ 
Sbjct: 460 PNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKL 519

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EEM   G  PD  TY T +D +CK   + +A +L   M  KG     PT  T+ +++  
Sbjct: 520 MEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGL---QPTIVTFNVLMNG 576

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
              +  +E+   L+  M++ G +P+ +T+  +++  C+   +    +  + M  +G  PD
Sbjct: 577 FCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPD 636

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +K  C  +N  EA  L+  M+E G   +  +YN LI  +++  + + A + + 
Sbjct: 637 TNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFE 696

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM   G   + + Y + +D  ++    E    L +E + K L
Sbjct: 697 EMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCL 738



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 16/325 (4%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           K + E  + K  P+      ++  LC+ G V  A  +   + +K +KP+  TY  L    
Sbjct: 378 KLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                         +M++ G  P+  TY   +D  CK   V  A +L   M  KG     
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGL---Q 494

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  +I  L +   +E+   L+  M  +G  PD  TY  +++  C  G++ +A++ 
Sbjct: 495 PNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHEL 554

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L  M +KG  P IVT+N  +   C +   ++  RL   M++ G  P+  T+N L+  Y  
Sbjct: 555 LRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCI 614

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
                   E +  M  +G   D +TY ++I G      ++EA FL +E+V KG  L    
Sbjct: 615 RNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAAS 674

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMR 474
           ++S +             KL + MR
Sbjct: 675 YNSLIKGFYKRKKFEEARKLFEEMR 699



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 131/294 (44%), Gaps = 16/294 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---- 217
           K ++E +    +P+      L+D  CK G +  A ++  + V+  + PN  TY  L    
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     + L EM + G  P+  TYN  I+  CK   + +A  L E M   G     
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFF--- 529

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  ++ A  +   M +   LL  M++ G  P + T+  ++ G C++G +E+  + 
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           ++ M +KG  P+  T+N  +K  C   N    + +Y  M   G  P   TYN+LI  + +
Sbjct: 590 IKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCK 649

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 A+    EM ++G +    +Y  +I G +   K EEA  L EE+   G 
Sbjct: 650 ARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGF 703


>gi|242074540|ref|XP_002447206.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
 gi|241938389|gb|EES11534.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
          Length = 446

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 177/402 (44%), Gaps = 44/402 (10%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM--IDILSSTKYKAKQFR 136
           L   +V+  L  +  + + A  FF W+         P A  L   +DIL     K  +F 
Sbjct: 37  LDASAVLETLSLYANDWRRALDFFHWSASPTGANLPPTAATLARAVDILG----KHFEFP 92

Query: 137 LVCSML-DYMKRNNKVFVP---------------VDVLLMILKQYTEKIKVKTQPEINAL 180
           L  S+L  +    +  F+                VD  L         I ++ +    + 
Sbjct: 93  LATSLLLSHHDPEDPAFLRPALRALLNRLAAANLVDDALRAFDSTAASIGLRDE---ASF 149

Query: 181 NLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL--GM----------QTLEEMIQ 227
           +LL+DALC    VD A+ +C  +      P   T+N+L  G           Q   +M +
Sbjct: 150 HLLVDALCDHRRVDEADHLCFGKDPPPFPPGTKTHNLLLRGWAKTRAWARLRQLWFDMDR 209

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G A D  +Y+  +D   K+    +   +F+ M+ KG  I +  A   AI  V L Q   
Sbjct: 210 RGVAKDLHSYSIYMDALAKSGKPWKTFKVFKEMKQKGVRIDT-VAYNTAIHAVGLAQG-- 266

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++    L   M+++GC P+ +TY  +++  C  G+ +E Y F+++M   G  PD++TY+C
Sbjct: 267 VDSAVRLYRQMVDAGCKPNTATYNGIVKLFCKEGRFKEGYAFVQQMHKTGCKPDVLTYHC 326

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           F + L   +   E L L+ +M+E GC P + TY MLI  +   G     F  W  M+++G
Sbjct: 327 FFQFLSRPQ---EVLGLFEKMLERGCQPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEEQG 383

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            + D   Y  +ID L     V+ A    EE++ KGL    RK
Sbjct: 384 LSPDAFAYNALIDALLQKGMVDLARKYDEEMLAKGLSPKPRK 425


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 158/341 (46%), Gaps = 26/341 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E   V   P++    +L+D+ CK GL++ A+ + + +++    P   TY  L      
Sbjct: 246 FQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 305

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTIS-- 268
                        M+  G  P++ TY   +D  CKA  +++A +++ + + T  S  S  
Sbjct: 306 AKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDF 365

Query: 269 ----------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
                     +P   TY  ++  L +  +++    LL  M++SGC P+   Y  +++G C
Sbjct: 366 YFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFC 425

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AGK++ A +   +M   GY P + TY   +  +  +   D A+++  +M++  C P+V 
Sbjct: 426 KAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVV 485

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I     +GE + A +    M+++GC+ +V TY  +IDGL    K++ +  L  ++
Sbjct: 486 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 545

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             KG    Y  +   +  L   G L     L   M++ Y P
Sbjct: 546 SRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWP 586



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 25/248 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     L+D LCK   VD+A                       + L+ M+  G  P++
Sbjct: 377 PNVVTYGALVDGLCKAHKVDHAH----------------------ELLDAMLSSGCEPNH 414

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  ID FCKA  +  A ++F  M   G     P+  TY  +I  + ++ R++    +
Sbjct: 415 IVYDALIDGFCKAGKIDSAQEVFLQMTKCGYL---PSVHTYTSLIDRMFKDGRLDLAMKV 471

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M+   C P+V TY  +++G+C  G+ E+A K L  M  KG  P++VTY   +  L  
Sbjct: 472 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 531

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               D +L L+ +M   GC P+  TY +LI+     G  D A     EM +    + +  
Sbjct: 532 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQG 591

Query: 415 YCVMIDGL 422
           Y   I G 
Sbjct: 592 YRCAIQGF 599



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 26/255 (10%)

Query: 200 CKRVKNKV-----KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKR+ N +      PN + +N L              + L  M   G  P    YN  I 
Sbjct: 96  CKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIG 155

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C         ++  A  ++  M      ++      +A  +  + + D+    F L+ 
Sbjct: 156 SICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKA---FQLIK 212

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+  G +PD STY +V+  +C A KVE+A+   +EM   G  PD+ TY   +   C   
Sbjct: 213 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 272

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A  L+  M  VGC P+V TY  LI  Y +  +   A + +H M   GC  +  TY 
Sbjct: 273 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 332

Query: 417 VMIDGLFDCSKVEEA 431
            ++DGL     + +A
Sbjct: 333 ALVDGLCKAGNISKA 347



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 19/248 (7%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C      +A  L + M  KG     P   TY+ +I  L    ++E+ F L   M   G 
Sbjct: 198 LCGVGKFDKAFQLIKEMMRKGFV---PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 254

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PDV TY  +++  C AG +E+A    EEM + G  P +VTY   +      K   +A  
Sbjct: 255 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 314

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----------------DKRG 407
           ++ RM++ GC P+  TY  L+    + G    AFE + ++                D+  
Sbjct: 315 IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 374

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
            A +V TY  ++DGL    KV+ A  LL+ +++ G +  +  +D+ +      G + +  
Sbjct: 375 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 434

Query: 468 KLSDHMRK 475
           ++   M K
Sbjct: 435 EVFLQMTK 442



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 55/320 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A E   +  K    P+ +TY  L             M+
Sbjct: 411 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 470

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++    P+  TY   ID  C+     +A  L   M  KG    SP   TY  +I 
Sbjct: 471 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGC---SPNVVTYTALID 527

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  +++    L   M   GC P+  TY+ ++  +C AG +++A   L EM    +P 
Sbjct: 528 GLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK 587

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG--------- 391
            +  Y C ++    +K+   +L +   M   G  P    Y MLI  + + G         
Sbjct: 588 YLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELH 645

Query: 392 ----------------------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
                                       + + AF  + EM +RG   ++  +  +I GL 
Sbjct: 646 KEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLV 705

Query: 424 DCSKVEEACFLLEEVVNKGL 443
           +  K +EA  L   + ++G+
Sbjct: 706 EVKKWDEALQLCYGICHEGV 725



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 22/281 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEE------------MIQMG 229
           ++  L +    D A +   R++ N   PN  TY  L    L++            M+  G
Sbjct: 48  MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 107

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+   +N+ + ++C  +    A  L   M T G     P    Y I I ++   +++ 
Sbjct: 108 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC---PPGYVVYNIFIGSICGQEKLP 164

Query: 290 E------CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
                     + G M+ + C+ +          +C  GK ++A++ ++EM  KG+ PD  
Sbjct: 165 SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTS 224

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +  LC     ++A  L+  M  VG  P V TY +LI  + + G  + A   + EM
Sbjct: 225 TYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 284

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              GC+  V TY  +I       +V +A  +   +V+ G +
Sbjct: 285 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCR 325



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 120/288 (41%), Gaps = 53/288 (18%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D M ++ ++ + + VL  +LK           P +     ++D LC+ G  + A  +
Sbjct: 454 SLIDRMFKDGRLDLAMKVLSQMLKD-------SCTPNVVTYTAMIDGLCRIGESEKALKL 506

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K   PN  TY  L             +    +M + G +P+  TY   I+  C 
Sbjct: 507 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 566

Query: 247 ARMVTEAADLFEFMRT-----------------KGSTISS-------------PTAKTYA 276
           A ++ +A  L   M+                    S I+S             P A  Y 
Sbjct: 567 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYG 626

Query: 277 IMIVALVQNDRMEECFSLLGHM--INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           ++I    +  R+E    L   M  + S    D   Y  +++ +CLA +VEEA++   EM 
Sbjct: 627 MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 686

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRL-YGRMIEVGCWPSVQTYN 381
            +G+ P++  + C +K L + K  DEAL+L YG   E   W   ++++
Sbjct: 687 RRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVNWQGNKSFH 734



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 92/249 (36%), Gaps = 35/249 (14%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE-------------------------- 258
           M + G   D FT        CK     +A D+ E                          
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDE 60

Query: 259 ---FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
              F+         P   TY  ++   ++  ++  C  ++  M+  GC P+ S +  ++ 
Sbjct: 61  AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVH 120

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN------GDEALRLYGRMI 369
             C       AYK L  M   G PP  V YN F+  +C  +        D A ++YG M+
Sbjct: 121 SYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEML 180

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
              C  +             +G+ D AF+   EM ++G   D  TY  +I  L   +KVE
Sbjct: 181 AANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVE 240

Query: 430 EACFLLEEV 438
           +A  L +E+
Sbjct: 241 KAFLLFQEM 249



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 105/256 (41%), Gaps = 34/256 (13%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLV-------CS--------MLDYMKRNNKVF 152
           +D+     + Y  MID L       K  +L+       CS        ++D + +  K+ 
Sbjct: 477 KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKID 536

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP--- 209
           + +D+       +T+  +    P      +L++ LC  GL+D A  +   +K    P   
Sbjct: 537 LSLDL-------FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYL 589

Query: 210 --------NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
                     +   I  +  LEEM   G  P    Y   ID F KA  +  A +L + M 
Sbjct: 590 QGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMM 649

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
              S++ +     YA +I AL    ++EE F L   M   G +P++S +  +++G+    
Sbjct: 650 EVPSSVKTDN-DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVK 708

Query: 322 KVEEAYKFLEEMGNKG 337
           K +EA +    + ++G
Sbjct: 709 KWDEALQLCYGICHEG 724


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 144/291 (49%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           ++E I     P++   + L+   C  G L D  +   K +   +KP+  T+NIL      
Sbjct: 248 FSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCK 307

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G    + M++ G  P+  TYN+ +D +C  + V +A  +F  M   G    +P 
Sbjct: 308 DGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGV---NPD 364

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y+IMI    +  + +E  +L   M     +PDV TY  +++G+  +G++  A + ++
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M ++G PP I TYN  L  LC     D+A+ L  ++ + G  P++ TY++LI    + G
Sbjct: 425 QMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSG 484

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + A + +  +  +G   +VDTY +MI G        EA  LL ++ + G
Sbjct: 485 KLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNG 535



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 141/284 (49%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P++   N+L++A CK G +   +T+   + K  +KPN  TYN L               
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS 351

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M Q G  PD  +Y+  I+ FCK +   EA +LF+ M  K      P   TY+ +I 
Sbjct: 352 IFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNII---PDVVTYSSLID 408

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R+     L+  M + G  P + TY  +L+ +C   +V++A   L ++ +KG  P
Sbjct: 409 GLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQP 468

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY+  +K LC +   ++A +++  ++  G   +V TY ++I  +   G  + A    
Sbjct: 469 NMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALL 528

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +M+  GC  D  TY ++I  LF   + + A  LL E++ +G++
Sbjct: 529 SKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVR 572



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 192/445 (43%), Gaps = 44/445 (9%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR 147
            Q FQF +   F F  ++  + N+    ++Y+      S+T +         S+ + + R
Sbjct: 27  FQSFQFLKNTHFNFIPYSSSKINF----ISYSST----STTFHSNNDVDDAVSLFNRLLR 78

Query: 148 NNKV-----FVPVDVLLMILKQY------TEKIKVK-TQPEINALNLLLDALCKCGLVDY 195
            N       F  +   L+  K Y      ++K++ +  +P +   N+L++  C+ GL+ +
Sbjct: 79  RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPF 138

Query: 196 AETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           A ++  K +K    P+  T+  L                 ++++ +G   D  +Y T I 
Sbjct: 139 AFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             CK      A DL +  R  G+ +  P    Y  +I ++ +   + E F L   MI+ G
Sbjct: 199 GLCKVGETRAALDLLQ--RVDGNLVQ-PNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKG 255

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             PDV TY  ++ G C+ GK+ +A     +M  +   PD+ T+N  +   C +    E  
Sbjct: 256 ISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++  M++ G  P+  TYN L+  Y  + E + A   ++ M + G   D+ +Y +MI+G 
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR-------- 474
               K +EA  L +E+  K +      + S +  LS  G +    +L D M         
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTI 435

Query: 475 KFYNPVIARRLALNQKRVRISLREK 499
           + YN ++     ++Q    I+L  K
Sbjct: 436 RTYNSILDALCKIHQVDKAIALLTK 460



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 16/215 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P+I + +++++  CK    D A  + K +  K + P+  TY+ L             +Q
Sbjct: 362 NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQ 421

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            +++M   G  P   TYN+ +D  CK   V +A  L   ++ KG     P   TY+I+I 
Sbjct: 422 LVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGI---QPNMYTYSILIK 478

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L Q+ ++E+   +   ++  G   +V TY  +++G C+ G   EA   L +M + G  P
Sbjct: 479 GLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIP 538

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           D  TY   +  L      D A +L   MI  G  P
Sbjct: 539 DAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 135/276 (48%), Gaps = 20/276 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN--ILGM----------QTLEEMIQ 227
           N L+D LCK G +  AE + +R+K +   P+   Y+  + G+          Q LE+M  
Sbjct: 191 NTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRD 250

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             H P+  TYNT +D  CK+  +  A ++ E M +  S         Y+ ++  L +  R
Sbjct: 251 SHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS--SDGCGLNVVGYSTVVDGLCKLGR 308

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E  S++  M  +GC PDV TY  ++ G+C AGK+EEA + + EM  +G  P+ VTY  
Sbjct: 309 TQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 348 FLKVLCDNKNGDEALRLYGRM-----IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            +  LC      EA R+   M         C PSV TYN LI    + G  D A + +  
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           M  +GC  D  +Y  +++GL    +  +A  +L EV
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 147/316 (46%), Gaps = 17/316 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEE------ 224
           ++ P++   + LL   CK G V+ +  + K V ++ ++P+A  Y  +     +       
Sbjct: 77  RSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEA 136

Query: 225 ------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                 MI+ G  P   T+NT I   C+ + +  A  L + M   G         TY  +
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKAD---VVTYNTL 193

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L +  R++E   LL  M  SGC PDV  Y   + G+C +GKV +A++ LE+M +  +
Sbjct: 194 MDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHH 253

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGAF 397
            P++VTYN  L  LC +   D AL +  +M    GC  +V  Y+ ++    +LG    A 
Sbjct: 254 DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEAR 313

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
                M + GC  DV TY  +++GL    K+EEA   + E+  +G K     + S +  L
Sbjct: 314 SVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGL 373

Query: 458 SVIGDLGAIHKLSDHM 473
              G L    ++ + M
Sbjct: 374 CSCGRLAEAERMVEEM 389



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M + G  P++ T+N  ++ F K     +   L E M  +      P   +Y  ++  L +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDI---QPNVVSYNGLLEGLCK 57

Query: 285 NDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +R  E   L+  MI+ G    PD+ TY  +L G C AGKVEE+ + L+E+ ++G  PD 
Sbjct: 58  LERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDA 117

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           + Y   +  LC +    EAL L   MI  GC P++ T+N LIS        + A     +
Sbjct: 118 LMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQK 177

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M   G   DV TY  ++DGL    +++EA  LLE +   G       + S++  L   G 
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237

Query: 463 LGAIHKLSDHMRKFYN 478
           +   H++ + MR  ++
Sbjct: 238 VLDAHQVLEQMRDSHH 253



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 18/281 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTLE-------- 223
           P     N L++   K G     E + + +  + ++PN  +YN L  G+  LE        
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 224 --EMIQMG--HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             +MI  G    PD  TY+T +  +CKA  V E+ +L + + ++G     P A  Y  ++
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGL---RPDALMYTKVV 124

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            +L ++ R+ E   LL  MI +GC P + T+  ++ G C    +E A   L++M   G  
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVK 184

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            D+VTYN  +  LC      EA +L  RM   GC P V  Y+  +    + G+   A + 
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQV 244

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             +M       +V TY  ++DGL    K++ A  ++E++ +
Sbjct: 245 LEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---- 217
           K Y E +     P++  +N  +D + K G  +    + + +  +   P+A +Y+IL    
Sbjct: 530 KIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 589

Query: 218 -----GMQTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  +T E    M + G   D   YN  ID FCK+  V +A  L E M+ KG     
Sbjct: 590 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH---P 646

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     ++G   +V  Y  +++G    G+++EAY  
Sbjct: 647 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLI 706

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +EE+  KG  P++ T+NC L  L   +  +EAL  +  M ++ C P+  TY++LI+    
Sbjct: 707 MEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCR 766

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K G   +  TY  MI GL     + EA  L       G
Sbjct: 767 VRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 819



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 192/437 (43%), Gaps = 26/437 (5%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           I+++      +E +L +LG     + V+GVL+R + +   A  +F WA  Q    H P A
Sbjct: 69  ILESGPWGPTLENSLSALGEKPLPELVIGVLKRLK-DANTAVNYFQWAEKQTEKVHCPEA 127

Query: 118 YNLMIDILSSTKYKAKQFRLVCSM-LDYMKRNNKVFVPVDVLLMILKQYTEKI------- 169
           YN ++ +++         R++  M L     ++ + + +    +  ++  E         
Sbjct: 128 YNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMR 187

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217
           K K +P  +A  +L+ AL +    D    +  +++    + N + +  L           
Sbjct: 188 KFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVD 247

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +  L+EM       D   YN  ID F KA  V  +   F  M++ G     P   TY 
Sbjct: 248 AALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLM---PDDVTYT 304

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            MI  L + +R++E   L   +  +  +P    Y  ++ G   AGK +EAY  LE    K
Sbjct: 305 SMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAK 364

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P ++ YNC L  L   +  +EALR++  M +    P+V TYN+LI M    G+ + A
Sbjct: 365 GSIPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAA 423

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            E   +M++ G   +V T  +MID L    K+EEAC + E + +K        F S +  
Sbjct: 424 LEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDG 483

Query: 457 LSVIGDLGAIHKLSDHM 473
           L   G +   + L + M
Sbjct: 484 LGKCGRVDDAYSLYEKM 500



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 181/429 (42%), Gaps = 70/429 (16%)

Query: 102 FMWAGHQD---NYAHEPLAYNLMIDILSSTKY-----KAKQFRLVCSMLDYMKRNNKVFV 153
           F  AG  D    + HE  ++ LM D ++ T       KA +      + + +++N KV  
Sbjct: 275 FGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPC 334

Query: 154 PVDVLLMILKQYT-----------EKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICK 201
                 MI+   +           E+ K K   P + A N +L  L K   V+ A  I +
Sbjct: 335 AYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFE 394

Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
            +K    PN  TYNIL             ++  ++M + G  P+  T N  ID  CKA+ 
Sbjct: 395 EMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQK 454

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL-------------- 295
           + EA  +FE M  K   + +P A T++ +I  L +  R+++ +SL               
Sbjct: 455 LEEACSIFEGMDDK---VCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIV 511

Query: 296 ----------------GH-----MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
                           GH     M+++GC PD++     ++ +  AG+ E+      E+ 
Sbjct: 512 YTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREIN 571

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G+ PD  +Y+  +  L      +E   L+  M E GC      YN +I  + + G+ +
Sbjct: 572 AHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVN 631

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A++   EM  +G    V TY  +IDGL    +++EA  L EE  + G+KL    + S +
Sbjct: 632 KAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLI 691

Query: 455 MQLSVIGDL 463
                +G +
Sbjct: 692 DGFGKVGRI 700


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 171/392 (43%), Gaps = 43/392 (10%)

Query: 95  EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
           E+ A    M A   DN     ++Y  +I          K + L C MLD+        +P
Sbjct: 232 EEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDH-------GIP 284

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANT 213
                               P +   N ++D LCK   +D AE + ++ +   + PN  T
Sbjct: 285 --------------------PNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTT 324

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L             ++ L+EM + G  P+  TY+  ID  CK+ +  EA ++F  M 
Sbjct: 325 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMI 384

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P A TY  ++        + +  ++   M+ +G  P    +   +   C  G
Sbjct: 385 QSGQ---KPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCG 441

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +++EA     +M  +G+ PDIV Y   +  LC     D+A+  + +MI+ G  P + T+N
Sbjct: 442 RLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFN 501

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI  +   G+ + A E ++EM  RG   +V+T+  MID LF   KV EA  L + +   
Sbjct: 502 TLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRA 561

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G K     +++ +    + G++G + KL D M
Sbjct: 562 GAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM 593



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 23/279 (8%)

Query: 164 QYTEKIKV-------KTQPEINALNLLLDALCKCGL-VDYAETICKRVKNKVKPNANTY- 214
           Q+TE +++         +P +   ++L+D LCK GL  +  E     +++  KPNA+TY 
Sbjct: 337 QWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYG 396

Query: 215 ----------NILGMQTLEE-MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
                     N++ M  +++ M+Q G  P    +N  I  +CK   + EA+  F  M+ +
Sbjct: 397 SLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQ 456

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P    Y  +I  L +  R+++  S    MI+ G  PD+ T+  ++ G  L GK 
Sbjct: 457 GFM---PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKW 513

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E+A +   EM ++G PP++ T+N  +  L       EA +L+  M   G  P+V +YN +
Sbjct: 514 EKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTM 573

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           I  YF  GE     +   +M   G      T+  ++DG+
Sbjct: 574 IHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGM 612



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 16/282 (5%)

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           KV P+  T+ IL            G   L ++I+ G      T+   + T C  +  ++A
Sbjct: 139 KVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDA 198

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYK 311
            ++   +R       +P   +Y  ++  L    + EE   L+  M   G  C P+V +Y 
Sbjct: 199 MNIV--LRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYT 256

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            V+ G    G V +AY    +M + G PP++VT N  +  LC  +  D+A  +  +MI+ 
Sbjct: 257 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 316

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              P+  TYN LI  Y   G+   A     EM + G   +V TY ++ID L       EA
Sbjct: 317 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEA 376

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +   ++  G K     + S L   +  G+L  ++ + D M
Sbjct: 377 REIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLM 418



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 155/395 (39%), Gaps = 69/395 (17%)

Query: 30  IGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKA-------LDSLGVP--LT 80
           +GK  +L CK+ D     +        ++ID       M+KA       +D   +P   T
Sbjct: 268 VGKAYTLFCKMLDHG---IPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTT 324

Query: 81  TDSVV-GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVC 139
            +S++ G L   Q+ E +     M    +D      + Y+++ID L  +   A+   +  
Sbjct: 325 YNSLIHGYLSSGQWTEAVRILKEM---SRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFN 381

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEK-------------IKVKTQPEINALNLLLDA 186
           SM+   ++ N           +L  Y  +             ++   +P  +  N+ + A
Sbjct: 382 SMIQSGQKPN-----ASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYA 436

Query: 187 LCKCGLVDYAE-TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD 233
            CKCG +D A  T  K  +    P+   Y  +             M    +MI  G +PD
Sbjct: 437 YCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPD 496

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             T+NT I  F       +A +LF  M  +G     P   T+  MI  L +  ++ E   
Sbjct: 497 IITFNTLIHGFALHGKWEKAEELFYEMMDRGI---PPNVNTFNSMIDKLFKEGKVTEARK 553

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM---GNK-------------- 336
           L   M  +G  P+V +Y  ++ G  +AG+V E  K L++M   G K              
Sbjct: 554 LFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMV 613

Query: 337 --GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
             G  PD+VT    +   C++   ++ L L+  M+
Sbjct: 614 SMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREML 648



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 35/208 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQT 221
           P+I A   ++D LCK G +D A +  C+ + + + P+  T+N L              + 
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEEL 519

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+  G  P+  T+N+ ID   K   VTEA  LF+ M   G+    P   +Y  MI  
Sbjct: 520 FYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGA---KPNVVSYNTMIHG 576

Query: 282 LVQNDRMEECF-------------------SLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
                 + E                     +LL  M++ G  PDV T K +++  C  G+
Sbjct: 577 YFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGR 636

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
           +E+      EM  K    D +T N  L+
Sbjct: 637 IEDILTLFREMLGKADKTDTITENIKLR 664



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-S 385
           +  +   G K   PDI T+   +   CD    +      G++I+ G      T+  L+ +
Sbjct: 129 FNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRT 188

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +  E    D        M + GC  DV +Y  ++ GL    K EEA  L+  +   G   
Sbjct: 189 LCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNC 248

Query: 446 P 446
           P
Sbjct: 249 P 249


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---- 217
           K Y E +     P++  +N  +D + K G  +    + + +  +   P+A +Y+IL    
Sbjct: 285 KIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 344

Query: 218 -----GMQTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  +T E    M + G   D   YN  ID FCK+  V +A  L E M+ KG     
Sbjct: 345 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH---P 401

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     ++G   +V  Y  +++G    G+++EAY  
Sbjct: 402 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLI 461

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +EE+  KG  P++ T+NC L  L   +  +EAL  +  M ++ C P+  TY++LI+    
Sbjct: 462 MEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCR 521

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K G   +  TY  MI GL     + EA  L       G
Sbjct: 522 VRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 574



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 51/345 (14%)

Query: 167 EKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
           E+ K K   P + A N +L  L K   V+ A  I + +K    PN  TYNIL        
Sbjct: 114 ERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREG 173

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  ++M + G  P+  T N  ID  CKA+ + EA  +FE M  K   + +P A 
Sbjct: 174 KLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK---VCTPNAV 230

Query: 274 TYAIMIVALVQNDRMEECFSLL------------------------------GH-----M 298
           T++ +I  L +  R+++ +SL                               GH     M
Sbjct: 231 TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 290

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
           +++GC PD++     ++ +  AG+ E+      E+   G+ PD  +Y+  +  L      
Sbjct: 291 VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLA 350

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           +E   L+  M E GC      YN +I  + + G+ + A++   EM  +G    V TY  +
Sbjct: 351 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 410

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           IDGL    +++EA  L EE  + G+KL    + S +     +G +
Sbjct: 411 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRI 455


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 16/289 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           +++  +P+I A N ++D+LCK   V+ A    K +  K ++PN  TY  L          
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + L +MI+    P+  TY+  +D F K   V EA ++FE M  + S    P   TY
Sbjct: 242 NDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEM-VRMSI--DPDIVTY 298

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L  +DR++E   +   M++ GC PDV +Y  ++ G C A +VE+  K   +M  
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQ 358

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G   + VTYN  ++      + D+A   + +M   G  P + TYN+L+    + G  + 
Sbjct: 359 RGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEK 418

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           A   + +M K     D+ TY  +I G+    KVE+A  L   +  KGLK
Sbjct: 419 ALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLK 467



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 147/325 (45%), Gaps = 16/325 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI------- 216
           + E +K +  P I   N LL A+ K    D   ++ K+++   ++ +  T+NI       
Sbjct: 73  FREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCC 132

Query: 217 -----LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                L +  L +M+++G+ PD  T  + ++ FC+   V++A  L + M   G     P 
Sbjct: 133 CFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY---RPD 189

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I +L +  R+ +       +   G  P+V TY  ++ G+C +G+  +A + L 
Sbjct: 190 IVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLR 249

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  +   P+++TY+  L     N    EA  ++  M+ +   P + TY+ LI+      
Sbjct: 250 DMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHD 309

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D A + +  M  +GC  DV +Y  +I+G     +VE+   L  ++  +GL      ++
Sbjct: 310 RIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYN 369

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKF 476
           + +     +GD+    +    M  F
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQMDSF 394



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 45/331 (13%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
            Y  + +AYN +ID L  T       R V   LD+ K                    E  
Sbjct: 185 GYRPDIVAYNAIIDSLCKT-------RRVNDALDFFK--------------------EIG 217

Query: 170 KVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL----------- 217
           +   +P +     L++ LC  G   D A  +   +K K+ PN  TY+ L           
Sbjct: 218 RKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVL 277

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              +  EEM++M   PD  TY++ I+  C    + EA  +F+ M +KG     P   +Y 
Sbjct: 278 EAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCF---PDVVSYN 334

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I    +  R+E+   L   M   G + +  TY  +++G    G V++A +F  +M + 
Sbjct: 335 TLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSF 394

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PDI TYN  L  LCDN   ++AL ++  M +      + TY  +I    + G+ + A
Sbjct: 395 GVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDA 454

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           +  +  +  +G   D+ TY  M+ GL  C+K
Sbjct: 455 WGLFCSLSLKGLKPDIVTYTTMMSGL--CTK 483



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%)

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           D     R    T   P+   +  ++ A+V+  + +   SL   M   G   D+ T+  V+
Sbjct: 68  DAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVI 127

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
              C   +V  A   L +M   GY PD VT    +   C      +A+ L  +M+E+G  
Sbjct: 128 NCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYR 187

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P +  YN +I    +    + A + + E+ ++G   +V TY  +++GL +  +  +A  L
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 435 LEEVVNK 441
           L +++ +
Sbjct: 248 LRDMIKR 254



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ +  +L   M+ +   P +  +  +L  +    K +      ++M   G   D+ T+N
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       AL + G+M+++G  P   T   L++ +        A     +M + 
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           G   D+  Y  +ID L    +V +A    +E+  KG++
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIR 222


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 141/287 (49%), Gaps = 16/287 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E +     P +   + L+      G L D  +   K +   +KP+  T+NIL      
Sbjct: 220 YSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCK 279

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G      M++ G  P+  TY + +D +C  + V +A  +   M  +G    +P 
Sbjct: 280 DGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGV---NPD 336

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y I+I    +  +++E  +L   M +   +PDV TY  +++G+C  GK+  A K ++
Sbjct: 337 IQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVD 396

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G PPDI+TY+  L  LC N   D+A+ L  ++ + G  P++ TY +LI    + G
Sbjct: 397 EMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGG 456

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             + A   + ++  +G    V+TY VMI G  +    +EA  LL ++
Sbjct: 457 RLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKM 503



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 132/275 (48%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--GM----------QTLEEMIQMG 229
           L+  LCK G    A  + +RV  N V+PN   Y+ +  GM              EM+  G
Sbjct: 168 LIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG 227

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +P+  TY+  I  F     + +A DLF  M  +      P   T+ I++    ++ +M+
Sbjct: 228 ISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENI---KPDVYTFNILVDGFCKDGKMK 284

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  ++   M+  G  P+V TY  +++G CL  +V +A   L  M  +G  PDI +YN  +
Sbjct: 285 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILI 344

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  DEA+ L+  M      P V TYN LI    +LG+   A +   EM  RG  
Sbjct: 345 DGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVP 404

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D+ TY  ++D L    +V++A  LL ++ ++G++
Sbjct: 405 PDIITYSSILDALCKNHQVDKAIALLTKLKDQGIR 439



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 155/347 (44%), Gaps = 25/347 (7%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTEKI 169
           Y+ +ID +   K+    F L   M+      N V        F  V  L   +  + + I
Sbjct: 200 YSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMI 259

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL----------- 217
               +P++   N+L+D  CK G +   +T+    +K  +KPN  TY  L           
Sbjct: 260 LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVN 319

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                L  M Q G  PD  +YN  ID FCK + V EA +LF+ M  K      P   TY 
Sbjct: 320 KAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHII---PDVVTYN 376

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L +  ++     L+  M + G  PD+ TY  +L+ +C   +V++A   L ++ ++
Sbjct: 377 SLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQ 436

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P++ TY   +  LC     ++A  ++  ++  G   +V TY ++I  +   G  D A
Sbjct: 437 GIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEA 496

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                +M    C  D  TY ++I  LFD  + ++A   L E++ +GL
Sbjct: 497 LALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAE-KLREMITRGL 542



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   + ++D +CK   V+ A +   + V   + PN  TY+ L             + 
Sbjct: 194 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAID 253

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI     PD +T+N  +D FCK   + E   +F  M  +G     P   TY  ++ 
Sbjct: 254 LFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGI---KPNVVTYCSLMD 310

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  + +  S+L  M   G  PD+ +Y  +++G C   KV+EA    +EM +K   P
Sbjct: 311 GYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIP 370

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTYN  +  LC       AL+L   M + G  P + TY+ ++    +  + D A    
Sbjct: 371 DVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALL 430

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            ++  +G   ++ TY ++IDGL    ++E+A  + E+++ KG
Sbjct: 431 TKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 3/252 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + ++ MG   D   Y T I   CK      A DL    R  G+ +  P    Y+ +I  +
Sbjct: 151 DNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLR--RVDGNLV-QPNVVMYSTIIDGM 207

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++  + + F L   M++ G  P+V TY  ++ G    G++++A     +M  +   PD+
Sbjct: 208 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDV 267

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T+N  +   C +    E   ++  M++ G  P+V TY  L+  Y  + E + A    + 
Sbjct: 268 YTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYT 327

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M +RG   D+ +Y ++IDG     KV+EA  L +E+ +K +      ++S +  L  +G 
Sbjct: 328 MSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGK 387

Query: 463 LGAIHKLSDHMR 474
           +    KL D M 
Sbjct: 388 ISYALKLVDEMH 399



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 88/189 (46%)

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LF F          P   T+  +I  L    ++ +      +++  G   D   Y  ++ 
Sbjct: 111 LFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIH 170

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G+C  G+   A   L  +      P++V Y+  +  +C +K+ ++A  LY  M+  G  P
Sbjct: 171 GLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISP 230

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +V TY+ LIS +F +G+   A + +++M       DV T+ +++DG     K++E   + 
Sbjct: 231 NVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVF 290

Query: 436 EEVVNKGLK 444
             ++ +G+K
Sbjct: 291 AMMMKQGIK 299



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 22/227 (9%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y++   TF     V +A  LF  +  +  T   P A  +  ++ +LV++       SL  
Sbjct: 44  YSSISTTFHNNNDVVDAFSLFSRLLRQNPT---PPAIEFNKILGSLVKSKHYHTVLSLSQ 100

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M   G  P +  ++   + M                   GY P+ +T+   +K LC   
Sbjct: 101 QMEFEGINPVLFHFQHPHQLM-------------------GYHPNTITFTTLIKGLCLKG 141

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
              +AL  +  ++ +G       Y  LI    ++GE   A +    +D      +V  Y 
Sbjct: 142 QIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYS 201

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            +IDG+     V +A  L  E+V+KG+      + + +     +G L
Sbjct: 202 TIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQL 248


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E ++V   P +   N L+  LC+ GL +   + + + V +   P+   Y  +        
Sbjct: 250 EMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEG 309

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L+ M   G  P+   YNT +   C A    +A +L   M      +      
Sbjct: 310 HLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDD---V 366

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  +     LL  M+  GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P+ ++Y   LK LC  +   +A  L  +MIE GC P+  T+N +I+   + G  
Sbjct: 427 AACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K +EA  LL  +VNKG+      + S 
Sbjct: 487 EQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 546

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 547 ASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVIS 583



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 137/314 (43%), Gaps = 45/314 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILG------------MQ 220
           +P +   N +L  LC     + AE +   +  N    +  T+NIL             ++
Sbjct: 327 KPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIE 386

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---STIS--------- 268
            LE+M++ G  PD  TY T I+ FCK  ++ EA  L + M   G   +TIS         
Sbjct: 387 LLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLC 446

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                               SP   T+  +I  L +   +E+   LL  M+ +GC PD+ 
Sbjct: 447 SAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLI 506

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           +Y  V++G+  AGK +EA + L  M NKG  P+ + Y+     L      +  ++++  +
Sbjct: 507 SYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNI 566

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            +V        YN +IS   + G  D A E    M   GC  +  TY ++I GL     V
Sbjct: 567 QDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFV 626

Query: 429 EEACFLLEEVVNKG 442
           +EA  +L E+ +KG
Sbjct: 627 KEAQEMLTELCSKG 640



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 20/287 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N ++   C+ G +  A  +   V   V PNA TY  +             +  L+EM + 
Sbjct: 87  NAMVSGYCRAGQLASARRLAASVP--VPPNAYTYFPVVRALCARGRIADALSVLDEMRRR 144

Query: 229 GHAPDNFTYNTAIDTFCKARMVT---EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           G AP    Y+  ++  C          A  + + +  +G  +         ++     Q 
Sbjct: 145 GCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALD--VGNCNLVLNAVCDQG 202

Query: 286 DRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++E   LL  +  S GC PDV +Y  VL+G+C+A +       +EEM   G PP++VT
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           +N  +  LC N   +   ++  +M++ GC P ++ Y  ++    + G  + A E    M 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             G   +V  Y  ++ GL    + E+A  LL E+ +    L    F+
Sbjct: 323 SYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFN 369



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 107/263 (40%), Gaps = 38/263 (14%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
            ++ L+++   G A D    N  ++  C +   V EA  L   + T  S    P   +Y 
Sbjct: 172 AVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPT--SFGCDPDVVSYN 229

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVST--------------------------- 309
            ++  L    R      L+  M+  GC P+V T                           
Sbjct: 230 AVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDH 289

Query: 310 --------YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
                   Y  VL+G+C  G +E A++ L+ M + G  P++V YN  LK LC  +  ++A
Sbjct: 290 GCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQA 349

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             L   M +  C     T+N+L+  + + G      E   +M + GC  DV TY  +I+G
Sbjct: 350 EELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVING 409

Query: 422 LFDCSKVEEACFLLEEVVNKGLK 444
                 ++EA  LL+ +   G +
Sbjct: 410 FCKEGLIDEAVMLLKSMAACGCR 432



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 54/204 (26%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           ++ I+    P     N +++ LCK GLV+ A                      ++ L++M
Sbjct: 459 SQMIEQGCSPNPVTFNTVINFLCKKGLVEQA----------------------IELLKQM 496

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------STISSPTAKT--- 274
           +  G +PD  +Y+T ID   KA    EA +L   M  KG        S+I+S  +K    
Sbjct: 497 LLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRI 556

Query: 275 ---------------------YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
                                Y  +I +L +    +     L +M++SGC+P+ STY  +
Sbjct: 557 NRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTIL 616

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKG 337
           + G+   G V+EA + L E+ +KG
Sbjct: 617 IRGLASEGFVKEAQEMLTELCSKG 640



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 89/241 (36%), Gaps = 44/241 (18%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN  +  +C+A  +  A       R   S    P A TY  ++ AL    R+ +  S+L 
Sbjct: 86  YNAMVSGYCRAGQLASAR------RLAASVPVPPNAYTYFPVVRALCARGRIADALSVLD 139

Query: 297 HMINSGCLPDVSTYKEVLEGMC---LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
            M   GC P    Y  +LE  C     G    A + L+++  +G   D+   N  L  +C
Sbjct: 140 EMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVC 199

Query: 354 DNKNG-DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           D     DEALRL                         L +   +F         GC  DV
Sbjct: 200 DQGGSVDEALRL-------------------------LRDLPTSF---------GCDPDV 225

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            +Y  ++ GL    +      L+EE+V  G       F++ +  L   G    +H++   
Sbjct: 226 VSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQ 285

Query: 473 M 473
           M
Sbjct: 286 M 286


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 181/409 (44%), Gaps = 38/409 (9%)

Query: 61  NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
           N N    +   L SL  PL    V  VL R Q +E++A  FF WA  Q  Y+H P+ Y  
Sbjct: 151 NPNFEGRLRHLLRSLKPPL----VCAVL-RSQADERVALNFFYWADRQWRYSHHPVVYYT 205

Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT------- 173
           M+D+LS TK      R+    L  M R   +  P +    ++  Y+   K++        
Sbjct: 206 MLDVLSKTKLCQGARRV----LRLMTRRG-IECPPEAFGYVMVSYSRAGKLRNALRVLTL 260

Query: 174 ------QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-----GMQT 221
                 +P ++  N  +  L K G ++ A    +R++   +KP+  TYN L      +  
Sbjct: 261 MQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNR 320

Query: 222 LEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
           +E+ +++       G  PD  +Y T +   CK + + E   L E M    + I  P   T
Sbjct: 321 IEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLI--PDQVT 378

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I  L ++   ++  + L    + G   D   Y  ++   C  G+++EA   + +M 
Sbjct: 379 YNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMY 438

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           ++G  PD+VTY   +   C     DEA ++  +M + GC P+  +Y  L++     G+  
Sbjct: 439 SRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSL 498

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            A E  +  ++     +  TY  ++ GL    K+ EAC L  E+V KG 
Sbjct: 499 EAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGF 547



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 136/328 (41%), Gaps = 22/328 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK------VKPNANTYNILGMQTLEE---- 224
           P+    N L+  L K G  D A    K  ++K      V  +A  ++      ++E    
Sbjct: 374 PDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSL 433

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M   G  PD  TY   +D FC+   + EA  + + M   G     P   +Y  ++  
Sbjct: 434 VIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGC---KPNTVSYTALLNG 490

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  + +  E   ++         P+  TY  V+ G+   GK+ EA     EM  KG+ P 
Sbjct: 491 LCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPT 550

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V  N  ++ LC N+   EA +     +  GC  +V  +  +I  + ++G+ + A     
Sbjct: 551 PVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLD 610

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M   G   D  TY  + D L    +++EA  L+ ++++KGL      + S + + S  G
Sbjct: 611 DMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWG 670

Query: 462 DLGAIHKLSDHM------RKFYNPVIAR 483
            +  +  L + M      R  YN VI +
Sbjct: 671 RVDDMLNLLEKMLKRQPFRTVYNQVIEK 698



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEE +  G A +   + T I  FC+   +  A  + + M   G     P A TY  +  A
Sbjct: 574 LEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGK---HPDAVTYTALFDA 630

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R++E   L+  M++ G  P   TY+ V+      G+V++    LE+M  +   P 
Sbjct: 631 LGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKR--QPF 688

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  ++ LCD  N +EA +L G+++         T ++L+  Y + G    A++   
Sbjct: 689 RTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKGVAISAYKVAC 748

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            M +R    D+     +   L    K+ EA  L+   V +G++
Sbjct: 749 RMFRRNLTPDLKLCEKVSKKLVLDGKLVEADNLMLRFVERGIQ 791


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 185/424 (43%), Gaps = 57/424 (13%)

Query: 86   GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
            GV     F + +AF  F WA + + + H P  Y  MID+      K +QF L   ++D M
Sbjct: 1151 GVRHGIPFPQTLAF--FNWATNLEEFGHSPEPYMEMIDLAG----KVRQFDLAWQLIDLM 1204

Query: 146  KRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-INALNLLLDALCKCGLVDYAETICKRVK 204
            K  N V +PV+   +++++Y   +K     E ++A N + D  CK   + ++  I    K
Sbjct: 1205 KTRN-VEIPVETFTILVRRY---VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSK 1260

Query: 205  NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
             +    A ++      +L++  +    PD   Y + +  +C+A  ++EA  +F  M+  G
Sbjct: 1261 KRRAIEAQSF----FDSLKDRFE----PDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 1312

Query: 265  STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                 P   TY+I+I AL ++ ++     +   MI+ GC P+  T+  ++     AG+ E
Sbjct: 1313 IX---PNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTE 1369

Query: 325  EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL---------------------- 362
            +  +   +M   G PPD +TYN  ++  C + N +EA+                      
Sbjct: 1370 KVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFG 1429

Query: 363  ------------RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                        R++ +M ++ C P+  TYN+L+ M+ +    D   +   EMD+     
Sbjct: 1430 CISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEP 1489

Query: 411  DVDTYCVMIDGLFDCSKVEEA-CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            + +TY V+I           A  F  E +  K L+     ++  L QL   G L    +L
Sbjct: 1490 NANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEEL 1549

Query: 470  SDHM 473
             + M
Sbjct: 1550 VEKM 1553



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 26/243 (10%)

Query: 118  YNLMIDILSSTKYKAKQFRLVCSMLDY------MKRNN--KVFVPVDVLLMILKQYTEKI 169
            Y+++ID L  +    +   +   M+D       +  NN  +V V       +L+ Y +  
Sbjct: 1320 YSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMK 1379

Query: 170  KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN-ILG---------- 218
            ++   P+    N L+++ C+   ++ A  I   VK     NA+++N I G          
Sbjct: 1380 RLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNS 1439

Query: 219  -MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK-GSTISSPTAKTYA 276
              +   +M  +   P+  TYN  +  F   +    + D+   +R +       P A TY 
Sbjct: 1440 AHRMFAKMKDLKCRPNTVTYNILMRMFADKK----STDMVLKLRKEMDENEIEPNANTYR 1495

Query: 277  IMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            ++I            +S    MI   CL P +  Y+ VL+ +  AG++++  + +E+M N
Sbjct: 1496 VLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVN 1555

Query: 336  KGY 338
            +G+
Sbjct: 1556 RGF 1558


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 176/405 (43%), Gaps = 40/405 (9%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           A  FF WA   + + H P  YN MID+      K KQF L   ++D MK  N V + V  
Sbjct: 131 ALAFFNWATAGEGFEHSPQPYNEMIDLAG----KVKQFGLAWYLIDLMKARN-VEITVVT 185

Query: 158 LLMILKQYTEKIKVKTQPE-INALNLLLDALCKCGLVDYAETI---CKR----------- 202
             M++++Y   ++     E ++A N + D  C   ++ ++  I   CK+           
Sbjct: 186 FSMLVRRY---VRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFD 242

Query: 203 -VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
            +K+K +P+   Y  L                  EM   G +P+ +TY+  ID  C++  
Sbjct: 243 NLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQ 302

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           +T A D+F  M   G    +P + T+  +I   ++  R E+   +   M    C  D+ T
Sbjct: 303 ITRAHDVFAEMLDAGC---NPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLIT 359

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++E  C    + EA K L  M      P+  ++N   + +  +++ + A R++ RM 
Sbjct: 360 YNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMK 419

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           EVGC P+  TYN+L+ M+      D  F+   EMD+     + +TY  +I          
Sbjct: 420 EVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWN 479

Query: 430 EACFLLEEVVN-KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            A     E+++ K +K     +   L +L   G L    +L D M
Sbjct: 480 HAYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKM 524



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 31/268 (11%)

Query: 94  EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV 153
           E +  FR    AG   N       Y+++ID L  +    +   +   MLD     N V  
Sbjct: 270 EAESVFREMKMAGISPNV----YTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTF 325

Query: 154 PVDVLLMILKQYTEKI--------KVKTQPEINALNLLLDALCKC-GLVDYAETICKRVK 204
              + + +    TEK+        +++   ++   N L++  CK   L +  + +    K
Sbjct: 326 NNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAK 385

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
           N   PNA+++N +              +    M ++G  P+  TYN  +  F     V +
Sbjct: 386 NDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFA----VPK 441

Query: 253 AADL-FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTY 310
           +AD+ F+  +        P   TY  +I            +     MI+  C+ P +  Y
Sbjct: 442 SADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREMIDEKCIKPSMPLY 501

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           K VLE +  AG++++  + +++M  +G+
Sbjct: 502 KMVLEELRKAGQLKKHEELVDKMVERGF 529


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 132/281 (46%), Gaps = 18/281 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN--TYNIL--------GMQTLEE 224
           P +   N+L+  LC  G V  AE    RV   + P+A   TYN +         ++    
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDAE----RVFAALGPSATVVTYNTMVNGYCRAGRIEDARR 240

Query: 225 MIQ-MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +I  M   PD FT+N  I   C    + +A  +F+ M  +G    SP+  TY+I++ A  
Sbjct: 241 LINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGC---SPSVVTYSILLDATC 297

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +     +  +LL  M   GC PD+ TY  ++  MC  G V+EA   L  + + G  PD V
Sbjct: 298 KESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAV 357

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   LK LC ++   E   L   M    C P   T+N +++   + G  D A E    M
Sbjct: 358 TYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHM 417

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            + GC  D+ TY  ++DGL D  +V++A  LL  + + G K
Sbjct: 418 SEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCK 458



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 142/309 (45%), Gaps = 16/309 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L  + + +     P +   ++LLDA CK      A  +   ++ K  +P+  TYN+L   
Sbjct: 271 LAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA 330

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +  L  +   G  PD  TY   + + C +    E  +L   M +      
Sbjct: 331 MCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC--- 387

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   T+  ++ +L Q   ++    ++ HM   GC+ D+ TY  +L+G+C  G+V++A +
Sbjct: 388 APDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVE 447

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  + + G  PD + Y   LK LC  +  + A  L   M+   C P   T+N +++   
Sbjct: 448 LLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLC 507

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G  D A     +M + GC+ D+ TY  +IDGL + S +++A  LL ++ + G K    
Sbjct: 508 QKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIV 567

Query: 449 KFDSYLMQL 457
            F++ L  L
Sbjct: 568 TFNTLLKGL 576



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 139/301 (46%), Gaps = 16/301 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY-----NILGMQT------ 221
           +P+I   N+L++A+C  G VD A  I   + +   KP+A TY     ++ G +       
Sbjct: 318 EPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEE 377

Query: 222 -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM     APD  T+NT + + C+  +V  A ++ + M   G         TY+ ++ 
Sbjct: 378 LLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVAD---IVTYSSILD 434

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    R+++   LL  + + GC PD   Y  VL+G+C   + E A + + EM     PP
Sbjct: 435 GLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPP 494

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VT+N  +  LC     D A+R+  +M E GC P + TYN +I         D A E  
Sbjct: 495 DEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELL 554

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            ++   GC  D+ T+  ++ GL    + E+A  L+  ++          F++ +  L   
Sbjct: 555 SDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQK 614

Query: 461 G 461
           G
Sbjct: 615 G 615



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 139/302 (46%), Gaps = 21/302 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANT 213
           VD  + +++Q +E       P+I   N ++D LC    +D A  +   +++   KP+  T
Sbjct: 512 VDRAIRVVEQMSEN---GCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVT 568

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +N L              Q +  M++    PD  T+NT I + C+  ++T+A +  + M 
Sbjct: 569 FNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMA 628

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P + TY+I++ AL++  + +    LL  M N    PD+ TY  V+  +  AG
Sbjct: 629 ENGCV---PNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAG 683

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K+EEA   L  M + G  PD  TY      +C     D A+R+  R+ + G  P    YN
Sbjct: 684 KMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYN 743

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            ++  +      D A + +  M   GC  D  TY ++++ L     ++EA  LL  + + 
Sbjct: 744 DVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSL 803

Query: 442 GL 443
           G+
Sbjct: 804 GV 805



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 16/279 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N ++ +LC+ GLVD A E +    ++    +  TY+ +             ++ 
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  +   G  PD   Y T +   C       A +L   M         P   T+  ++ +
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDC---PPDEVTFNTVVAS 505

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q   ++    ++  M  +GC PD+ TY  +++G+C    +++A + L ++ + G  PD
Sbjct: 506 LCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPD 565

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVT+N  LK LC     ++A +L   M+   C P   T+N +I+   + G    A ET  
Sbjct: 566 IVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLK 625

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            M + GC  +  TY +++D L    K + A  LL  + N
Sbjct: 626 IMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN 664



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 9/246 (3%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           + P     N  I   C    V++A  +F  +        S T  TY  M+    +  R+E
Sbjct: 183 NCPPVVPCNILIKRLCSDGRVSDAERVFAALG------PSATVVTYNTMVNGYCRAGRIE 236

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L+  M      PD  T+  ++  +C+ G++ +A    ++M ++G  P +VTY+  L
Sbjct: 237 DARRLINGMPFP---PDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILL 293

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C      +A+ L   M   GC P + TYN+LI+     G+ D A      +   GC 
Sbjct: 294 DATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCK 353

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            D  TY  ++  L    + +E   LL E+ +         F++ +  L   G +    ++
Sbjct: 354 PDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEV 413

Query: 470 SDHMRK 475
            DHM +
Sbjct: 414 VDHMSE 419


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 198/440 (45%), Gaps = 29/440 (6%)

Query: 30  IGKVPSLVCKV--FD-ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVV 85
           +GK+P     V  FD E  +S   + +    +I   ++++   E  + +L   L    V 
Sbjct: 122 VGKIPQSREDVGRFDVEEDESRHPLVREIGRLIGLRSSWNPKHEGQMRNLLRSLKPSQVC 181

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY- 144
            VL R Q +E++A +FF WA  Q  Y H+P+ Y  M+++LS TK      R++  M    
Sbjct: 182 AVL-RSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRG 240

Query: 145 MKRNNKVFVPVDVLLMILKQYTEKIKVKT-------QPEINALNLLLDALCKCGLVDYAE 197
           + R  + F+ V V      Q  + +KV T       +P +   N  +D   +   ++ A 
Sbjct: 241 IYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKAL 300

Query: 198 TICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTF 244
              +R++   + PN  TYN +             ++ L++M   G  PD  +Y T +   
Sbjct: 301 RFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYL 360

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           CK + + E  DL + M  +   +      TY  +I  L ++D  +E    L      G  
Sbjct: 361 CKEKRIVEVRDLMKKMAKEHGLVRDQV--TYNTLIHMLTKHDHADEALWFLKDAEEKGFR 418

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALR 363
            D   Y  ++  +C  G++ EA   + EM +KG+ PPD+VTY   +   C     D+A +
Sbjct: 419 IDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKK 478

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L   M   G  P+  +Y  L++     G+   A E  +  +++  + +  TY V++ GL 
Sbjct: 479 LLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLR 538

Query: 424 DCSKVEEACFLLEEVVNKGL 443
              K+ EAC ++ E+V KG 
Sbjct: 539 KEGKLSEACDVVREMVLKGF 558



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 10/275 (3%)

Query: 222 LEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           + EM+  GH  PD  TY   ++ FC+   V +A  L + M T G     P   +Y  ++ 
Sbjct: 444 INEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGY---KPNTVSYTALLN 500

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  +  E   ++         P+  TY  ++ G+   GK+ EA   + EM  KG+ P
Sbjct: 501 GLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFP 560

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             V  N  L+ LC +    EA +     +  GC  +V  +  +I  + +  E D A    
Sbjct: 561 GPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVL 620

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFDSYLMQL 457
            +M       DV TY  ++D L    ++ EA  L++++++KG+    + YR       Q+
Sbjct: 621 DDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQM 680

Query: 458 SVIGDLGAIHK---LSDHMRKFYNPVIARRLALNQ 489
             + DL AI +   L    +  YN VI +   L +
Sbjct: 681 EKVDDLVAILEKMILRQKCKTIYNQVIEKLCGLGK 715



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 4/248 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q  +  D   Y + ++   K +M   A  +   M+ +G    +P A  +  ++V+  +  
Sbjct: 203 QWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRG-IYRTPEA--FLRVMVSYSRAG 259

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ +   +L  M  +G  P++      ++    A ++E+A +FLE M   G  P++VTYN
Sbjct: 260 QLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 319

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK- 405
           C ++  CD    +EA+ L   M   GC P   +Y  ++    +        +   +M K 
Sbjct: 320 CMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 379

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G  +D  TY  +I  L      +EA + L++   KG ++    + + +  L   G +  
Sbjct: 380 HGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSE 439

Query: 466 IHKLSDHM 473
              L + M
Sbjct: 440 AKDLINEM 447



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 49/285 (17%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--GMQ---------- 220
           +P   +   LL+ LC+ G  ++  E +    +    PN+ TY++L  G++          
Sbjct: 489 KPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACD 548

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM+  G  P     N  + + C+     EA    E    KG  I+      +  +I 
Sbjct: 549 VVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAIN---VVNFTTVIH 605

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              QND ++   S+L  M       DV TY  +++ +   G++ EA + +++M +KG  P
Sbjct: 606 GFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDP 665

Query: 341 DIVTY---------------------------------NCFLKVLCDNKNGDEALRLYGR 367
             VTY                                 N  ++ LC     +EA +L G+
Sbjct: 666 TPVTYRTVIHRYCQMEKVDDLVAILEKMILRQKCKTIYNQVIEKLCGLGKLEEADKLLGK 725

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           ++        +T   L+  Y ++G P  A++    M  R    DV
Sbjct: 726 VLRTASRSDAKTCYALMEGYLKIGVPLLAYKVACRMFNRNLIPDV 770


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 21/303 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+      L+  LC  G +  A     K +    +PN  TY  L          
Sbjct: 132 LKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 191

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M Q    P+   ++T ID+ CK R VTEA ++F  M TKG    SP   TY
Sbjct: 192 SAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGI---SPNIVTY 248

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L +    +   +L+  M++S  +PDV T   V++ +C  G V EA+  ++ M +
Sbjct: 249 NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH 308

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P++VTYN  +   C     D A++++  M+   C  +V +YN LI+ Y ++   D 
Sbjct: 309 RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDK 368

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A   + EM ++    +  TY  +I GL    ++++A  L  E+V +G ++P    YR   
Sbjct: 369 AMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG-QIPDLVTYRTLS 427

Query: 452 SYL 454
            YL
Sbjct: 428 DYL 430



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +  K  P++  LN ++DALCK G+V  A  +   + ++ V+PN  TYN L        
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 329

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M+      +  +YNT I+ +CK + V +A  LFE M  +  T   P   
Sbjct: 330 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT---PNTV 386

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R+++  SL   M+  G +PD+ TY+ + + +C    +++A   L+ +
Sbjct: 387 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI 446

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
               + PDI  Y   L  +C     ++A  L+  +   G  P+V TYN++I    + G  
Sbjct: 447 EGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLL 506

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             A + + EM+K GC+ +  TY ++  G    ++      LLEE++ +G  +
Sbjct: 507 AEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSV 558



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 16/302 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++  L +++++LC    VD+A   + K +K   +P+A T+  L             +  
Sbjct: 103 PDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 162

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++MI  G  P+  TY T I+  CK    + A  L   M         P    ++ +I +
Sbjct: 163 FDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNC---QPNVVVFSTLIDS 219

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ ++ E F++   MI  G  P++ TY  ++ G+C   + +     + EM +    PD
Sbjct: 220 LCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPD 279

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + T N  +  LC      EA  +   MI  G  P+V TYN L+  +    E D A + + 
Sbjct: 280 VFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFD 339

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M  + C  +V +Y  +I+G      V++A +L EE+  + L      +++ +  L  +G
Sbjct: 340 TMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVG 399

Query: 462 DL 463
            L
Sbjct: 400 RL 401



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 16/315 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------Q 220
           QP +   + L+D+LCK   V  A  I   +  K + PN  TYN  I G+           
Sbjct: 207 QPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT 266

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM+     PD FT NT +D  CK  MV EA D+ + M  +G     P   TY  ++ 
Sbjct: 267 LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV---EPNVVTYNALMD 323

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                + ++    +   M++  C+ +V +Y  ++ G C    V++A    EEM  +   P
Sbjct: 324 GHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP 383

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN  +  LC      +A+ L+  M+  G  P + TY  L     +    D A    
Sbjct: 384 NTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
             ++      D+  Y  ++DG+    ++E+A  L   + +KGL+     ++  +  L   
Sbjct: 444 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 503

Query: 461 GDLGAIHKLSDHMRK 475
           G L    KL   M K
Sbjct: 504 GLLAEASKLFSEMNK 518



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + T   M+     P    +N  + +  K +     + L    R   S    P   T AI
Sbjct: 54  ALSTFNRMLHKQPPPSTVDFNRLLTSIAKTK---HHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +L   +R++  FS L  ++  G  PD +T+  ++ G+C+ GK+ EA    ++M  +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P++VTY   +  LC   N   A+RL   M +  C P+V  ++ LI    +  +   AF
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + EM  +G + ++ TY  +I GL    + +    L+ E+V+  +       ++ +  L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 458 SVIGDLGAIHKLSDHM 473
              G +   H + D M
Sbjct: 291 CKEGMVAEAHDVVDMM 306



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 16/224 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L++  CK   VD A  + + + + ++ PN  TYN L             +    EM+ 
Sbjct: 354 NTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVA 413

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  TY T  D  CK R + +A  L + +  +GS    P  + Y  ++  + +   
Sbjct: 414 RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI--EGSNWD-PDIQIYTTILDGMCRAGE 470

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   L  ++ + G  P+V TY  ++ G+C  G + EA K   EM   G  P+  TYN 
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
             +    N      + L   M+  G    V T  +L+ M  + G
Sbjct: 531 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EA      M +K  PP  V +N  L  +   K+    L L  +M   G  P V T  +
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I+    L   D AF    ++ K G   D  T+  +I GL    K+ EA  L ++++ +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +     + + +  L  +G+  A  +L   M +
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ 203



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 35/223 (15%)

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--- 342
           + ++E  S    M++    P    +  +L  +              +M + G PPD+   
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 343 --------------------------------VTYNCFLKVLCDNKNGDEALRLYGRMIE 370
                                            T+   ++ LC      EAL L+ +MI 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI+   ++G    A      M++  C  +V  +  +ID L    +V E
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           A  +  E++ KG+      ++S +  L  + +   +  L + M
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEM 271


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 21/303 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+      L+  LC  G +  A     K +    +PN  TY  L          
Sbjct: 132 LKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 191

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M Q    P+   ++T ID+ CK R VTEA ++F  M TKG    SP   TY
Sbjct: 192 SAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGI---SPNIVTY 248

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L +    +   +L+  M++S  +PDV T   V++ +C  G V EA+  ++ M +
Sbjct: 249 NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH 308

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P++VTYN  +   C     D A++++  M+   C  +V +YN LI+ Y ++   D 
Sbjct: 309 RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDK 368

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A   + EM ++    +  TY  +I GL    ++++A  L  E+V +G ++P    YR   
Sbjct: 369 AMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG-QIPDLVTYRTLS 427

Query: 452 SYL 454
            YL
Sbjct: 428 DYL 430



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +  K  P++  LN ++DALCK G+V  A  +   + ++ V+PN  TYN L        
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 329

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M+      +  +YNT I+ +CK + V +A  LFE M  +  T   P   
Sbjct: 330 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT---PNTV 386

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R+++  SL   M+  G +PD+ TY+ + + +C    +++A   L+ +
Sbjct: 387 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI 446

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
               + PDI  Y   L  +C     ++A  L+  +   G  P+V TYN++I    + G  
Sbjct: 447 EGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLL 506

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             A + + EM+K GC+ +  TY ++  G    ++      LLEE++ +G  +
Sbjct: 507 AEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSV 558



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 16/302 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++  L +++++LC    VD+A   + K +K   +P+A T+  L             +  
Sbjct: 103 PDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 162

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++MI  G  P+  TY T I+  CK    + A  L   M         P    ++ +I +
Sbjct: 163 FDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNC---QPNVVVFSTLIDS 219

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ ++ E F++   MI  G  P++ TY  ++ G+C   + +     + EM +    PD
Sbjct: 220 LCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPD 279

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + T N  +  LC      EA  +   MI  G  P+V TYN L+  +    E D A + + 
Sbjct: 280 VFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFD 339

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M  + C  +V +Y  +I+G      V++A +L EE+  + L      +++ +  L  +G
Sbjct: 340 TMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVG 399

Query: 462 DL 463
            L
Sbjct: 400 RL 401



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 16/315 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------Q 220
           QP +   + L+D+LCK   V  A  I   +  K + PN  TYN  I G+           
Sbjct: 207 QPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT 266

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM+     PD FT NT +D  CK  MV EA D+ + M  +G     P   TY  ++ 
Sbjct: 267 LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV---EPNVVTYNALMD 323

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                + ++    +   M++  C+ +V +Y  ++ G C    V++A    EEM  +   P
Sbjct: 324 GHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP 383

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN  +  LC      +A+ L+  M+  G  P + TY  L     +    D A    
Sbjct: 384 NTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
             ++      D+  Y  ++DG+    ++E+A  L   + +KGL+     ++  +  L   
Sbjct: 444 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 503

Query: 461 GDLGAIHKLSDHMRK 475
           G L    KL   M K
Sbjct: 504 GLLAEASKLFSEMNK 518



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + T   M+     P    +N  + +  K +     + L    R   S    P   T AI
Sbjct: 54  ALSTFNRMLHKQPPPSTVDFNRLLTSIAKTK---HHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +L   +R++  FS L  ++  G  PD +T+  ++ G+C+ GK+ EA    ++M  +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P++VTY   +  LC   N   A+RL   M +  C P+V  ++ LI    +  +   AF
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + EM  +G + ++ TY  +I GL    + +    L+ E+V+  +       ++ +  L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 458 SVIGDLGAIHKLSDHM 473
              G +   H + D M
Sbjct: 291 CKEGMVAEAHDVVDMM 306



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 16/224 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L++  CK   VD A  + + + + ++ PN  TYN L             +    EM+ 
Sbjct: 354 NTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVA 413

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  TY T  D  CK R + +A  L + +  +GS    P  + Y  ++  + +   
Sbjct: 414 RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI--EGSNWD-PDIQIYTTILDGMCRAGE 470

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   L  ++ + G  P+V TY  ++ G+C  G + EA K   EM   G  P+  TYN 
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
             +    N      + L   M+  G    V T  +L+ M  + G
Sbjct: 531 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EA      M +K  PP  V +N  L  +   K+    L L  +M   G  P V T  +
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I+    L   D AF    ++ K G   D  T+  +I GL    K+ EA  L ++++ +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +     + + +  L  +G+  A  +L   M +
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ 203



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 35/207 (16%)

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--- 342
           + ++E  S    M++    P    +  +L  +              +M + G PPD+   
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 343 --------------------------------VTYNCFLKVLCDNKNGDEALRLYGRMIE 370
                                            T+   ++ LC      EAL L+ +MI 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI+   ++G    A      M++  C  +V  +  +ID L    +V E
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           A  +  E++ KG+      ++S +  L
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGL 255


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 152/349 (43%), Gaps = 58/349 (16%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           + N+ N+L++A CK G ++ A  +       V PNA TY+ +             MQ L+
Sbjct: 138 DANSYNVLINAYCKSGEIEEALRVLDHTS--VAPNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
             +Q    PD  T    ID  CK   V +A  LF  MR KG     P   TY ++I    
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGC---KPDVVTYNVLIKGFC 252

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R++E    L  + + GC  DV ++  +L  +C  G+  +A K L  M  KG  P +V
Sbjct: 253 KEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVV 312

Query: 344 TYNCFLKVLCD----------------------------------NKNG-DEALRLYGRM 368
           T+N  +  LC                                   N+ G D A+     M
Sbjct: 313 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIM 372

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  GC+P + TYN+L++   + G+ D A     ++  +GC+  + +Y  +IDGL    K 
Sbjct: 373 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 432

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
           E A  LLEE+  KGLK         +   SV+G L    K+ + ++ F+
Sbjct: 433 ELAVELLEEMCYKGLK------PDLITCTSVVGGLSREGKVHEAIKFFH 475



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
            +++ K  P++    +L+DA CK   V  A  +   ++ K  KP+  TYN+L        
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEG 255

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                +  L+++   G   D  ++N  + + C      +A  L   M  KG     P+  
Sbjct: 256 RLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCF---PSVV 312

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I+I  L Q   + +  ++L  M   G  P+  ++  +++G C    ++ A + LE M
Sbjct: 313 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIM 372

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G  PDIVTYN  L  LC +   D+A+ +  ++   GC PS+ +YN +I    ++G+ 
Sbjct: 373 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 432

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   EM  +G   D+ T   ++ GL    KV EA      +   G+K     ++S 
Sbjct: 433 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSI 492

Query: 454 LMQL 457
           +M L
Sbjct: 493 MMGL 496



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 134/283 (47%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           Q ++ + N++L +LC  G  +D  + +   ++    P+  T+NIL             + 
Sbjct: 273 QSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALN 332

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE M + GH P++ ++N  I  FC  + +  A +  E M ++G     P   TY I++ 
Sbjct: 333 VLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCY---PDIVTYNILLT 389

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ ++++   +L  + + GC P + +Y  V++G+   GK E A + LEEM  KG  P
Sbjct: 390 ALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKP 449

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D++T    +  L       EA++ +  +   G  P+   YN ++    +  +   A +  
Sbjct: 450 DLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFL 509

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +M   GC     +Y  +I G+      EEA  L  E+ ++GL
Sbjct: 510 VDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGL 552



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 129/290 (44%), Gaps = 31/290 (10%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           L+  T K K+   P++ A   L+   CK G          R KN  +       I+G+  
Sbjct: 92  LEYMTNKGKI---PDVVACTALIREFCKIG----------RTKNATR-------IMGI-- 129

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEE    G   D  +YN  I+ +CK+  + EA      +R    T  +P A TY  ++ +
Sbjct: 130 LEES---GAVIDANSYNVLINAYCKSGEIEEA------LRVLDHTSVAPNAATYDAVLCS 180

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++++   +L   + S C PDV T   +++  C    V +A K   EM  KG  PD
Sbjct: 181 LCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPD 240

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +K  C     DEA+    ++   GC   V ++NM++      G    A +   
Sbjct: 241 VVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLA 300

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            M ++GC   V T+ ++I+ L     + +A  +LE +   G     R F+
Sbjct: 301 TMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFN 350



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 14/272 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G + LE M   G  PD       I  FCK      A  +   +   G+ I    A +Y +
Sbjct: 88  GSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID---ANSYNV 144

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I A  ++  +EE   +L H   +   P+ +TY  VL  +C  GK+++A + L+      
Sbjct: 145 LINAYCKSGEIEEALRVLDH---TSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSK 201

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+VT    +   C      +A++L+  M   GC P V TYN+LI  + + G  D A 
Sbjct: 202 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAI 261

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD---SYL 454
               ++   GC  DV ++ +++  L    +  +A  LL  ++ KG       F+   ++L
Sbjct: 262 IFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFL 321

Query: 455 MQLSVIGD-LGAIHKLSDHMR----KFYNPVI 481
            Q  ++G  L  +  +  H      + +NP+I
Sbjct: 322 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLI 353



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 150/347 (43%), Gaps = 23/347 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           +K + E      +P++   N+L+   CK G +D A    K++ +   + +  ++N++   
Sbjct: 226 MKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRS 285

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     M+ L  M++ G  P   T+N  I+  C+  ++ +A ++ E M   G T  
Sbjct: 286 LCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT-- 343

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P ++++  +I        ++     L  M++ GC PD+ TY  +L  +C  GKV++A  
Sbjct: 344 -PNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVV 402

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L ++ +KG  P +++YN  +  L      + A+ L   M   G  P + T   ++    
Sbjct: 403 ILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLS 462

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G+   A + +H +   G   +   Y  ++ GL    +   A   L ++V  G K    
Sbjct: 463 REGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEA 522

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
            + + +  ++  G       L++   K  N + +R L      V++S
Sbjct: 523 SYTTLIKGITYEG-------LAEEASKLSNELYSRGLVKKSLIVKVS 562



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 39/236 (16%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDV---------------------------------- 307
           L++N  +EE    L +M N G +PDV                                  
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 308 -STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            ++Y  ++   C +G++EEA + L+   +    P+  TY+  L  LCD     +A+++  
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLD---HTSVAPNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           R ++  C+P V T  +LI    +      A + ++EM  +GC  DV TY V+I G     
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEG 255

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHMRKFYNPVI 481
           +++EA   L+++ + G +      +  L  L   G  + A+  L+  +RK   P +
Sbjct: 256 RLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSV 311


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 176/399 (44%), Gaps = 35/399 (8%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           DES      V ++   I   SN     E+ L  L   L    V  VL R Q +E+IA  F
Sbjct: 125 DESEFRHPIVREVCRLISLRSNWNPKFEENLRHLLRSLNPRLVCAVL-RSQDDERIALDF 183

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDV--- 157
           F WA  Q  Y H+ + Y  M+DILS T+      R++  M    ++R+ + F  V V   
Sbjct: 184 FYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYS 243

Query: 158 ----LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
               L   L+  T   K   +P+++  N  +  L K   ++ A                 
Sbjct: 244 RAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKA----------------- 286

Query: 214 YNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ LE M   G  PD  +YN  I  +C    + +A +L   M  KG     P   
Sbjct: 287 -----LRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKG---CPPDKV 338

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMI-NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +Y  ++  L ++ ++EE   L+ +M+ NS  +PD  TY  ++  +   G  ++A  FL E
Sbjct: 339 SYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLRE 398

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
              KG+  D V Y+  +   C NKN D+A  L   M   GC P V TY  +I  +  +G+
Sbjct: 399 AEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGK 458

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            D A +   +M K GC  +  TY V+++GL    K  EA
Sbjct: 459 IDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEA 497



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 116/266 (43%), Gaps = 9/266 (3%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M   G  PD  TY   ID FC+   + EA  + + M   G     P   TY +++  L 
Sbjct: 433 DMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGC---KPNTVTYTVLLNGLC 489

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            N +  E   ++         P+  TY  V+ G+   GK+ EA     EM  KG+ P+ V
Sbjct: 490 HNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPV 549

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
             N  ++ LC N+N   A +     +  GC  +V  +  +I  + ++G+ D A     +M
Sbjct: 550 DINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDM 609

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
                  D  TY  + D L   S+++EA  L+ +++ KG+      + + + +    G +
Sbjct: 610 YLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRV 669

Query: 464 GAIHKLSDHM------RKFYNPVIAR 483
             + KL + M      +  YN VI +
Sbjct: 670 DDMMKLLEKMIARQPFKTVYNQVIEK 695



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 11/214 (5%)

Query: 215 NILGMQT-LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
           N++G +  LEE +  G A +   + + I  FC+   +  A  + E M         P A 
Sbjct: 563 NVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNK---HPDAI 619

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +  AL +  R++E   L+  M+  G  P   TY+ V+   C  G+V++  K LE+M
Sbjct: 620 TYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKM 679

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +   P    YN  ++ LC   N +EA +L G+++        +T ++LI  Y   G  
Sbjct: 680 IAR--QPFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLIDGNA 737

Query: 394 DGAFETWHEMDKRGCAQDVD-----TYCVMIDGL 422
             A++   +M +R    D+      T  +++DG+
Sbjct: 738 LSAYKVACQMFRRNLIPDLKLCEKVTKKLVLDGM 771



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 72/175 (41%)

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           A  Y  M+  L +    +    +L  M   G       +  V+     AG +  A + L 
Sbjct: 197 AIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRILT 256

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M   G  PD+   N  + VL      ++ALR   RM   G  P + +YN LI  Y ++ 
Sbjct: 257 LMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVH 316

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             D A E   EM  +GC  D  +Y  ++  L    KVEE   L+E +V     +P
Sbjct: 317 RIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIP 371


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 133/302 (44%), Gaps = 16/302 (5%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVK 208
           K  V   V+L+ L  Y   +     P     N+L+D LCK G+  D  +   + +   + 
Sbjct: 180 KALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIM 239

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN   Y +L             +Q L  M   G  PD  TYN  +   CK   V EA   
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQR 299

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              ++  G  +     K Y+ +I  L Q  R +E F     M+     PDV  Y  ++ G
Sbjct: 300 LVMLQDGGFALG---LKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRG 356

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              AG++E+A  FL+ M  KG+ PD   YN  LKVLCD+ + + A  L   M++      
Sbjct: 357 CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLD 416

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             T  ++I    + G  D A + + EM + GC   V TY  +IDG +   ++EEA  L  
Sbjct: 417 STTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFH 476

Query: 437 EV 438
           ++
Sbjct: 477 KM 478



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 117/265 (44%), Gaps = 15/265 (5%)

Query: 193 VDYAETICKRVKNKVKPNANTYN------------ILGMQTLEEMIQMGHAPDNFTYNTA 240
            D  +   +  + + +P A  YN            +L +     M+  G AP+  TYN  
Sbjct: 154 ADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVL 213

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +D  CK  M  +A  +F+ M  +G     P  K Y +++ +L    +++E   LLG M +
Sbjct: 214 MDGLCKQGMAGDALKMFDEMLDRGIM---PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GCLPD  TY   L G+C  G+V EA++ L  + + G+   +  Y+C +  L   +  DE
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
               Y  M+E    P V  Y ++I    E G  + A      M K+G   D   Y  ++ 
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
            L D   +E A  L  E++   L L
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVL 415



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +Q    M +    P  F YNT +     + ++  A  L+  M   G    +P   TY +
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGC---APNRATYNV 212

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L +     +   +   M++ G +P+V  Y  +L  +C AGK++EA + L  M +KG
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD VTYN FL  LC     +EA +    + + G    ++ Y+ LI   F+    D  F
Sbjct: 273 CLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGF 332

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             +  M +R  + DV  Y +MI G  +  ++E+A   L+ +  KG       +++ L  L
Sbjct: 333 GYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVL 392

Query: 458 SVIGDLGAIHKLSDHM 473
              GDL   H L   M
Sbjct: 393 CDHGDLERAHTLRSEM 408



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 55/339 (16%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
           G+ Q  +F+E   +   M    + N + + + Y +MI   +    +A +     S LD M
Sbjct: 321 GLFQARRFDEGFGYYKTML---ERNISPDVVLYTIMIRGCA----EAGRIEDALSFLDVM 373

Query: 146 KRNNKVFVP----VDVLLMILKQYTEKIKVKT-QPEINALNLLLDA---------LCKCG 191
           K+  K FVP     + +L +L  + +  +  T + E+   NL+LD+         LCK G
Sbjct: 374 KK--KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRG 431

Query: 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           LVD A                      MQ  +EM + G  P   TYN  ID F +   + 
Sbjct: 432 LVDEA----------------------MQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 252 EAADLFE----------FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           EA  LF           F+R          +++   ++  + Q+ ++ + + LL  +I+S
Sbjct: 470 EARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDS 529

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G +PDV TY  ++ G+C A  ++ A +  +E+  KG  PD +TY   +  L      ++A
Sbjct: 530 GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDA 589

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + L+  +++ G  PS+  YN ++     + +   A   W
Sbjct: 590 MMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 18/238 (7%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM+Q     D+ T    I   CK  +V EA  +F+ M   G     PT  TY  +I   
Sbjct: 406 SEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGC---DPTVMTYNALIDGF 462

Query: 283 VQNDRMEECFSLLGHMINSGCLP--------------DVSTYKEVLEGMCLAGKVEEAYK 328
            +  R+EE   +L H +  G  P              D  + ++++  MC +G+V +AYK
Sbjct: 463 YREGRLEEA-RMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYK 521

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  + + G  PD+VTYN  +  LC  +N D A+RL+  +   G  P   TY  LI    
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                + A   +  + + G +  +  Y  M+  L    K+ +A  L  + + K    P
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP 639



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 1/218 (0%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C A        LF F        S P    +A+ ++  + +   E  F  L     +G 
Sbjct: 75  LCAAIPAASRLRLFLFSALSPRLRSRPL-HAHAVSLLLRLSSHADEAMFDALADARAAGL 133

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
               S +  ++     AG+  +A +    M      P    YN  LK L D+     AL 
Sbjct: 134 PASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALA 193

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           LY RM+  GC P+  TYN+L+    + G    A + + EM  RG   +V  Y V++  L 
Sbjct: 194 LYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLC 253

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +  K++EA  LL  + +KG       ++++L  L  +G
Sbjct: 254 NAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVG 291



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 75/180 (41%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           ++  +A ++ A     R  +       M      P    Y  +L+ +  +G +  A    
Sbjct: 136 SSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALY 195

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             M   G  P+  TYN  +  LC      +AL+++  M++ G  P+V+ Y +L+S     
Sbjct: 196 NRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+ D A +    M  +GC  D  TY   + GL    +V EA   L  + + G  L  + +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 47/191 (24%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  +I  G  PD  TYNT I+  CKAR +  A  LF+ ++ KG    SP   TY  +I  
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI---SPDEITYGTLIDG 579

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----------------------- 318
           L++  R  +   L  +++ SG  P +S Y  ++  +C                       
Sbjct: 580 LLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP 639

Query: 319 -----------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
                            L   V E  K  +E G+    P    Y  +L  LC  +  D+A
Sbjct: 640 VESEVLANAHKEIEDGSLDDGVRELIKIDQEYGSISSNP----YTIWLIGLCQVRRTDDA 695

Query: 362 LRLYGRMIEVG 372
           LR++  + E G
Sbjct: 696 LRIFHTLQEFG 706



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 319 LAGKVEEA-YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           L+   +EA +  L +    G P     +   +          +A++ + RM E    P+ 
Sbjct: 113 LSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTA 172

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN ++    + G    A   ++ M   GCA +  TY V++DGL       +A  + +E
Sbjct: 173 FVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDE 232

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           ++++G+ +P  K   Y + LS + + G I
Sbjct: 233 MLDRGI-MPNVKI--YTVLLSSLCNAGKI 258


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 188/429 (43%), Gaps = 55/429 (12%)

Query: 61  NSNAYDNMEKALDSLGVPLTT------------DSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           +++ YD +    D  G PL+              +V   L  +  + K A  FF W   Q
Sbjct: 147 STSGYDGLRGGTDD-GEPLSNPIISPNSTSFDHSTVRQTLSCYANDWKRALEFFDWVQTQ 205

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY--- 165
             + H    YN MIDIL     K  +F L+  ++  MK +   +        + K+Y   
Sbjct: 206 CGFNHTTDTYNGMIDILG----KFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAA 261

Query: 166 ------------TEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKV-KPNA 211
                       TE+  ++ +    + + L+DALC+   V  AE +  K  K+ V   + 
Sbjct: 262 HLVEEAMNAYYRTEEFNLRDE---TSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDV 318

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
             YNI+              +  EEM + G     ++Y+  +D  CK+     A  L++ 
Sbjct: 319 KIYNIILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKE 378

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M+ KG  +       Y  +I A+  ++ ++    +   M   GC P+V TY  +++ +C 
Sbjct: 379 MKKKGIRLD---VVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCE 435

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
            G++ EAY   ++M  KGY P+++TY+CF   +   K   + LR + RMI  G  P + T
Sbjct: 436 NGRIREAYGVFDQMREKGYAPNVITYHCFFGCIEKPK---QILRTFDRMINSGVRPRMDT 492

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           Y ML+  +   G     F  W +M+++GC+ D   Y  +ID L     V+ A    EE++
Sbjct: 493 YVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEML 552

Query: 440 NKGLKLPYR 448
            KGL    R
Sbjct: 553 AKGLSAKPR 561



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 19/255 (7%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEF-------MRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           TYN  ID   K          FEF        R K   ++ P   T+  +         +
Sbjct: 214 TYNGMIDILGK---------FFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLV 264

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNC 347
           EE  +   +      L D ++Y  +++ +C    V EA + FL+E  +  +  D+  YN 
Sbjct: 265 EEAMNAY-YRTEEFNLRDETSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDVKIYNI 323

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L+         +    +  M   G   S+ +Y++ + +  + G+P  A + + EM K+G
Sbjct: 324 ILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKG 383

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV  Y  +I  +     V+ +  +  E+   G +     +++ +  L   G +   +
Sbjct: 384 IRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAY 443

Query: 468 KLSDHMR-KFYNPVI 481
            + D MR K Y P +
Sbjct: 444 GVFDQMREKGYAPNV 458


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 166/362 (45%), Gaps = 36/362 (9%)

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF     ++      + YN +ID     +   + F+L+  M   +K  N   +  +V++ 
Sbjct: 224 FFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA--LKGLNPNLISYNVVIN 281

Query: 161 IL------KQYTEKI----KVKTQPEINALNLLLDALCKCG-----LVDYAETICKRVKN 205
            L      K+ +E +    K +  P+    N L++  C  G     LV +AE     VKN
Sbjct: 282 GLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM----VKN 337

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            + PN  TY  L             M+ L++M   G  P+  TY T ID F +   + +A
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             + + M   G T   PT  TY  +I       RME+   LL  MI  G +PDV +Y  +
Sbjct: 398 YQIMKEMVENGFT---PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C   ++E+A++   EM  KG  PD+ TY+  ++ LC  +   E   L+  M+ +G 
Sbjct: 455 ISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL 514

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P   TY  LI+ Y   G+ D A     EM ++G + D+ TY V+I+G    S+ +EA  
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 434 LL 435
           LL
Sbjct: 575 LL 576



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 154/321 (47%), Gaps = 17/321 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------QT 221
           P +   N ++DA CK   +  A  + + +  K + PN  +YN++  G+          + 
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM +  + PD  T+NT I+ +C      +A  L   M   G    SP   TY  +I +
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGL---SPNVVTYTTLINS 352

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +   +      L  M + G  P+  TY  +++G    G +++AY+ ++EM   G+ P 
Sbjct: 353 MCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPT 412

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I+TYN  +   C     ++A  L   MIE G  P V +Y+ +IS +    E + AF+   
Sbjct: 413 IITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKV 472

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM  +G + DV TY  +I GL    ++ E C L +E+++ GL      + S +    + G
Sbjct: 473 EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEG 532

Query: 462 DLGAIHKLSDHM-RKFYNPVI 481
           DL    +L D M +K ++P I
Sbjct: 533 DLDKALRLHDEMIQKGFSPDI 553



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 136/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGL-VDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           P + + N +LDA+ +    V  AE I K  V++ V PN  TYNIL            G+ 
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM + G  P+  TYNT ID +CK R + EA  L   M  KG    +P   +Y ++I 
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG---LNPNLISYNVVIN 281

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  +M+E   +L  M     +PD  T+  ++ G C  G   +A     EM   G  P
Sbjct: 282 GLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSP 341

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTY   +  +C   N + A+    +M + G  P+ +TY  LI  + + G    A++  
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIM 401

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM + G    + TY  +I+G     ++E+A  LL+E++ +G 
Sbjct: 402 KEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 132/301 (43%), Gaps = 37/301 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN-------ILGMQT---- 221
            P       L+D   + G +  A  I K  V+N   P   TYN       ILG       
Sbjct: 375 HPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 222 -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EMI+ G  PD  +Y+T I  FC+ + + +A  L   M  KG    SP   TY+ +I 
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGI---SPDVATYSSLIQ 491

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  R+ E   L   M++ G  PD  TY  ++   C+ G +++A +  +EM  KG+ P
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP 551

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS--------------- 385
           DIVTYN  +          EA RL  +++     P+  TYN LI                
Sbjct: 552 DIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMK 611

Query: 386 ---MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              M   + E D   E+   M ++G   + + Y V+I G      +E+A  L +E+++ G
Sbjct: 612 GFCMKGLMNEADRVLES---MLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668

Query: 443 L 443
            
Sbjct: 669 F 669



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 39/251 (15%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           G  P   +YN  +D   + +   + A+ +F+ M   G    SP   TY I+I        
Sbjct: 162 GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGV---SPNVYTYNILIRGFCTAGN 218

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLE-------------------------------- 315
           +E      G M  +GCLP+V TY  +++                                
Sbjct: 219 LEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNV 278

Query: 316 ---GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
              G+C  G+++E  + LEEM  + Y PD VT+N  +   C+  N  +AL L+  M++ G
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+V TY  LI+   + G  + A E   +M  RG   +  TY  +IDG      +++A 
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 433 FLLEEVVNKGL 443
            +++E+V  G 
Sbjct: 399 QIMKEMVENGF 409



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 8/241 (3%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV---QNDRMEECFS 293
           ++  + +  +  ++ +A  +    ++ G     P   +Y  ++ A++   Q+ ++ E   
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFM---PGVLSYNAILDAVIRTKQSVKIAE--G 189

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +   M+ SG  P+V TY  ++ G C AG +E    F  EM   G  P++VTYN  +   C
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYC 249

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +   EA +L   M   G  P++ +YN++I+     G+     E   EM KR    D  
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRV 309

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           T+  +I+G  +     +A  L  E+V  GL      + + +  +   G+L    +  D M
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQM 369

Query: 474 R 474
           R
Sbjct: 370 R 370



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 34/245 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL----------- 222
           P++ + + ++   C+   ++ A +   + V   + P+  TY+ L +Q L           
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSL-IQGLCKQRRLGEVCD 504

Query: 223 --EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+ +G  PD  TY + I+ +C    + +A  L + M  KG    SP   TY ++I 
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF---SPDIVTYNVLIN 561

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE---------------GMCLAGKVEE 325
              +  R +E   LL  ++    +P+  TY  +++               G C+ G + E
Sbjct: 562 GFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNE 621

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLI 384
           A + LE M  KGY  +   YN  +       N ++A  LY  M+  G  P SV    +  
Sbjct: 622 ADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAK 681

Query: 385 SMYFE 389
           S+Y E
Sbjct: 682 SLYHE 686



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           TA++ A  +V    ++  E+ F  L +     C    + +  V++       + +A   +
Sbjct: 97  TAQSLAEEVVVNTVDETGEDLFQCLKNSYYQ-CKSSSAVFDLVVKSCARVNLINKALSIV 155

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDE-ALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
               + G+ P +++YN  L  +   K   + A  ++  M+E G  P+V TYN+LI  +  
Sbjct: 156 NLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCT 215

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G  +     + EM++ GC  +V TY  +ID      K+ EA  LL  +  KGL
Sbjct: 216 AGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 145/300 (48%), Gaps = 26/300 (8%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-----------KPNANTY 214
           T+ +K+  +P    LN L+  LC  G +     I  ++K+ V            P+  T+
Sbjct: 121 TKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTF 180

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            IL                L  M+  G  P   TYN+ +D +   + V +A  +F  M  
Sbjct: 181 TILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQ 240

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G    SP  ++Y+I+I    +   M+E   LL  M +   +P+V TY  +++G+C +GK
Sbjct: 241 LGV---SPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGK 297

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +  A K ++EM ++G PP+IVTY+  L  LC N   D A+ L  +M   G  P++ TY +
Sbjct: 298 ISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTI 357

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI    + G+ + A + + ++  +G   +V TY VMI G  D    +EA  LL ++ + G
Sbjct: 358 LIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNG 417



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 193/440 (43%), Gaps = 37/440 (8%)

Query: 26  LQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNME--KALDSLGVPLTTDS 83
           + ++   +P         +++ V D   L+  ++  +    N+E  K L SL       +
Sbjct: 21  INTHFNFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHT 80

Query: 84  VVGVLQRFQFEE--------KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQF 135
           V+ + Q+ +F           I    F   GH       P A++++  IL    YK    
Sbjct: 81  VLYLSQKMEFRGIKPNLVNCNILINSFCQLGHI------PSAFSVLTKILK-MGYKPNTI 133

Query: 136 RLVCSMLDYMKRNNKVF---VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL 192
            L  +++  +  N K+      V  L   +  + + I     P++    +L+D  CK G 
Sbjct: 134 TLN-TLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGR 192

Query: 193 VDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNT 239
           V  A+ +   +    +KP   TYN L                   M Q+G +PD  +Y+ 
Sbjct: 193 VKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSI 252

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I+ FCK +M+ EA +L + M  K      P   TY+ +I  L ++ ++     L+  M 
Sbjct: 253 LINGFCKIKMMDEAMELLKEMHHKQII---PNVVTYSSLIDGLCKSGKISYALKLVDEMH 309

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
           + G  P++ TY  +L+ +C   +V+ A   L +M N+G  P++ TY   +K LC +   +
Sbjct: 310 DRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLE 369

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +A +++  ++  G   +V TY ++I  + + G  D A     +M+  GC  +  TY ++I
Sbjct: 370 DARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIII 429

Query: 420 DGLFDCSKVEEACFLLEEVV 439
             LF   + E A  LL E++
Sbjct: 430 LSLFKKDENEMAEKLLCEMI 449



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 35/281 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P +   N+L+++ C+ G +  A ++                      L ++++MG+ P+
Sbjct: 94  KPNLVNCNILINSFCQLGHIPSAFSV----------------------LTKILKMGYKPN 131

Query: 234 NFTYNTAI----------DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
             T NT I          D  C    + +A DLF  M  +     +P   T+ I++    
Sbjct: 132 TITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENI---NPDVYTFTILVDGFC 188

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R++E  ++L  M+  G  P V TY  +++G  L  +V +A      M   G  PDI 
Sbjct: 189 KEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQ 248

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           +Y+  +   C  K  DEA+ L   M      P+V TY+ LI    + G+   A +   EM
Sbjct: 249 SYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEM 308

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             RG   ++ TY  ++D L    +V+ A  LL ++ N+G++
Sbjct: 309 HDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQ 349



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 13/268 (4%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              ++Q    P N  +N  + +  K++       L + M  +G     P      I+I +
Sbjct: 50  FNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGI---KPNLVNCNILINS 106

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV----------EEAYKFLE 331
             Q   +   FS+L  ++  G  P+  T   +++G+CL GK+          ++A     
Sbjct: 107 FCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFN 166

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  +   PD+ T+   +   C      EA  +   M+  G  P V TYN L+  YF + 
Sbjct: 167 KMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVK 226

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + + A   ++ M + G + D+ +Y ++I+G      ++EA  LL+E+ +K +      + 
Sbjct: 227 QVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYS 286

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           S +  L   G +    KL D M     P
Sbjct: 287 SLIDGLCKSGKISYALKLVDEMHDRGQP 314



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   + +LDALCK   VD A  +  ++KN+ ++PN  TY IL              + 
Sbjct: 315 PNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKV 374

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+++  GH  + +TY   I  FC   +  EA  L   M   G     P AKTY I+I++
Sbjct: 375 FEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCI---PNAKTYEIIILS 431

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           L + D  E    LL  MI +     V+   +++  + + G         ++ G   Y
Sbjct: 432 LFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTGSSPGNSLLCKKQGKAAY 488


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 133/302 (44%), Gaps = 16/302 (5%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVK 208
           K  V   V+L+ L  Y   +     P     N+L+D LCK G+  D  +   + +   + 
Sbjct: 180 KALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIM 239

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN   Y +L             +Q L  M   G  PD  TYN  +   CK   V EA   
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQR 299

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              ++  G  +     K Y+ +I  L Q  R +E F     M+     PDV  Y  ++ G
Sbjct: 300 LVMLQDGGFALG---LKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRG 356

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              AG++E+A  FL+ M  KG+ PD   YN  LKVLCD+ + + A  L   M++      
Sbjct: 357 CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLD 416

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             T  ++I    + G  D A + + EM + GC   V TY  +IDG +   ++EEA  L  
Sbjct: 417 STTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFH 476

Query: 437 EV 438
           ++
Sbjct: 477 KM 478



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 117/265 (44%), Gaps = 15/265 (5%)

Query: 193 VDYAETICKRVKNKVKPNANTYN------------ILGMQTLEEMIQMGHAPDNFTYNTA 240
            D  +   +  + + +P A  YN            +L +     M+  G AP+  TYN  
Sbjct: 154 ADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVL 213

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +D  CK  M  +A  +F+ M  +G     P  K Y +++ +L    +++E   LLG M +
Sbjct: 214 MDGLCKQGMAGDALKMFDEMLDRGIM---PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GCLPD  TY   L G+C  G+V EA++ L  + + G+   +  Y+C +  L   +  DE
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
               Y  M+E    P V  Y ++I    E G  + A      M K+G   D   Y  ++ 
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
            L D   +E A  L  E++   L L
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVL 415



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +Q    M +    P  F YNT +     + ++  A  L+  M   G    +P   TY +
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGC---APNRATYNV 212

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L +     +   +   M++ G +P+V  Y  +L  +C AGK++EA + L  M +KG
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD VTYN FL  LC     +EA +    + + G    ++ Y+ LI   F+    D  F
Sbjct: 273 CLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGF 332

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             +  M +R  + DV  Y +MI G  +  ++E+A   L+ +  KG       +++ L  L
Sbjct: 333 GYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVL 392

Query: 458 SVIGDLGAIHKLSDHM 473
              GDL   H L   M
Sbjct: 393 CDHGDLERAHTLRSEM 408



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 55/339 (16%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
           G+ Q  +F+E   +   M    + N + + + Y +MI   +    +A +     S LD M
Sbjct: 321 GLFQARRFDEGFGYYKTML---ERNISPDVVLYTIMIRGCA----EAGRIEDALSFLDVM 373

Query: 146 KRNNKVFVP----VDVLLMILKQYTEKIKVKT-QPEINALNLLLDA---------LCKCG 191
           K+  K FVP     + +L +L  + +  +  T + E+   NL+LD+         LCK G
Sbjct: 374 KK--KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRG 431

Query: 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           LVD A                      MQ  +EM + G  P   TYN  ID F +   + 
Sbjct: 432 LVDEA----------------------MQIFDEMGEHGCDPTVMTYNALIDGFYREGRLE 469

Query: 252 EAADLFE----------FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           EA  LF           F+R          +++   ++  + Q+ ++ + + LL  +I+S
Sbjct: 470 EARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDS 529

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G +PDV TY  ++ G+C A  ++ A +  +E+  KG  PD +TY   +  L      ++A
Sbjct: 530 GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDA 589

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + L+  +++ G  PS+  YN ++     + +   A   W
Sbjct: 590 MMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 18/238 (7%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM+Q     D+ T    I   CK  +V EA  +F+ M   G     PT  TY  +I   
Sbjct: 406 SEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGC---DPTVMTYNALIDGF 462

Query: 283 VQNDRMEECFSLLGHMINSGCLP--------------DVSTYKEVLEGMCLAGKVEEAYK 328
            +  R+EE   +L H +  G  P              D  + ++++  MC +G+V +AYK
Sbjct: 463 YREGRLEEA-RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYK 521

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  + + G  PD+VTYN  +  LC  +N D A+RL+  +   G  P   TY  LI    
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                + A   +  + + G +  +  Y  M+  L    K+ +A  L  + + K    P
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP 639



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 1/218 (0%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C A        LF F        S P    +A+ ++  + +   E  F  L     +G 
Sbjct: 75  LCAAIPAASRLRLFLFSALSPRLRSRPL-HAHAVSLLLRLSSHADEAMFDALADARAAGL 133

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
               S +  ++     AG+  +A +    M      P    YN  LK L D+     AL 
Sbjct: 134 PASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALA 193

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           LY RM+  GC P+  TYN+L+    + G    A + + EM  RG   +V  Y V++  L 
Sbjct: 194 LYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLC 253

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +  K++EA  LL  + +KG       ++++L  L  +G
Sbjct: 254 NAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVG 291



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 75/180 (41%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           ++  +A ++ A     R  +       M      P    Y  +L+ +  +G +  A    
Sbjct: 136 SSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALY 195

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             M   G  P+  TYN  +  LC      +AL+++  M++ G  P+V+ Y +L+S     
Sbjct: 196 NRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+ D A +    M  +GC  D  TY   + GL    +V EA   L  + + G  L  + +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 39/187 (20%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  +I  G  PD  TYNT I+  CKAR +  A  LF+ ++ KG    SP   TY  +I  
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI---SPDEITYGTLIDG 579

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA-----------YKF- 329
           L++  R  +   L  +++ SG  P +S Y  ++  +C   K+ +A           Y F 
Sbjct: 580 LLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP 639

Query: 330 --LEEMGNK------GYPPDIV----------------TYNCFLKVLCDNKNGDEALRLY 365
              E + N       G   D V                 Y  +L  LC  +  D+ALR++
Sbjct: 640 VESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGLCQVRRTDDALRIF 699

Query: 366 GRMIEVG 372
             + E G
Sbjct: 700 HTLQEFG 706



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 319 LAGKVEEA-YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           L+   +EA +  L +    G P     +   +          +A++ + RM E    P+ 
Sbjct: 113 LSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTA 172

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN ++    + G    A   ++ M   GCA +  TY V++DGL       +A  + +E
Sbjct: 173 FVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDE 232

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           ++++G+ +P  K   Y + LS + + G I
Sbjct: 233 MLDRGI-MPNVKI--YTVLLSSLCNAGKI 258


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 139/296 (46%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++    +L++A C    V  A  +   + ++  KP+  TYN+L             ++ 
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M   G  P+  T+N  + + C      +A  L   M  KG    SP+  T+ I+I  
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGC---SPSVVTFNILINF 130

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   +     +L  M   GC P+  +Y  +L G C   K++ A ++LE M ++G  PD
Sbjct: 131 LCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPD 190

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTYN  L  LC +   D A+ L  ++   GC P + TYN +I    ++G+ D A E  H
Sbjct: 191 IVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLH 250

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           EM  +G   DV TY  +I GL    KVEEA     +V   G+K     ++S +  L
Sbjct: 251 EMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGL 306



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 15/279 (5%)

Query: 197 ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTF 244
           E + ++++ +  P+  TY IL             M+ L+EM   G  PD  TYN  ++  
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           CK   + EA      M + GS    P   T+ I++ ++    R  +   LL  M+  GC 
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGS---QPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCS 118

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P V T+  ++  +C  G +  A   LE+M   G  P+ ++YN  L   C  K  D A++ 
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              M+  GC+P + TYN +++   + G+ D A E  +++  +GC+  + TY  +IDGL  
Sbjct: 179 LEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             K ++A  LL E+  KGLK     + S +  LS  G +
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKV 277



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 141/284 (49%), Gaps = 16/284 (5%)

Query: 173 TQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GM 219
           +QP +   N++L ++C  G  +D  + + + V+    P+  T+NIL             +
Sbjct: 82  SQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAI 141

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             LE+M   G  P++ +YN  +  FCK + +  A    E M ++G     P   TY  M+
Sbjct: 142 DILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCY---PDIVTYNTML 198

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            AL ++ +++    LL  + + GC P + TY  V++G+   GK ++A + L EM  KG  
Sbjct: 199 TALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLK 258

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD++TY+  +  L      +EA++ +  +   G  P+  TYN ++    +  + D A + 
Sbjct: 259 PDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDF 318

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              M  +GC     +Y ++I+G+ +    +EA  LL E+ ++G+
Sbjct: 319 LAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGV 362



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 121/258 (46%), Gaps = 16/258 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---- 217
           K  TE ++    P +   N+L++ LC+ GL+  A  I +++  +   PN+ +YN L    
Sbjct: 107 KLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGF 166

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +Q LE M+  G  PD  TYNT +   CK   V  A +L   + +KG    S
Sbjct: 167 CKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKG---CS 223

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  +I  L +  + ++   LL  M   G  PDV TY  ++ G+   GKVEEA KF
Sbjct: 224 PVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKF 283

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             ++   G  P+  TYN  +  LC  +  D A+     MI  GC P+  +Y +LI     
Sbjct: 284 FHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIAN 343

Query: 390 LGEPDGAFETWHEMDKRG 407
            G    A E  +E+  RG
Sbjct: 344 EGLAKEALELLNELCSRG 361



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P++   N+L++ +CK G +D A      + +   +PN  T+NI+              +
Sbjct: 48  KPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEK 107

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM++ G +P   T+N  I+  C+  ++  A D+ E M T G T   P + +Y  ++ 
Sbjct: 108 LLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCT---PNSLSYNPLLH 164

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  +M+     L  M++ GC PD+ TY  +L  +C  GKV+ A + L ++ +KG  P
Sbjct: 165 GFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSP 224

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            ++TYN  +  L      D+A+ L   M   G  P V TY+ LI+     G+ + A + +
Sbjct: 225 VLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFF 284

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           H+++  G   +  TY  ++ GL    + + A   L  +++KG K P     SY + +  I
Sbjct: 285 HDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCK-PTEV--SYTILIEGI 341

Query: 461 GDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRI 494
            + G   +  + + +  +  + ++ +  Q  VR+
Sbjct: 342 ANEGLAKEALELLNELCSRGVVKKSSAEQVVVRL 375



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 1/213 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY I+I A      + +   LL  M + GC PDV TY  ++ GMC  G+++EA KF
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L  M + G  P+++T+N  L+ +C      +A +L   M+  GC PSV T+N+LI+    
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G    A +   +M   GC  +  +Y  ++ G     K++ A   LE +V++G       
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193

Query: 450 FDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVI 481
           +++ L  L   G +  A+  L+    K  +PV+
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVL 226


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 198/467 (42%), Gaps = 64/467 (13%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +I  S+A++ N E  L  L   L    V  VL R Q +E++A  FF WA  Q  Y+H PL
Sbjct: 139 LITLSSAWNPNFEGRLRHLLRSLKPSLVCAVL-RSQADERVALNFFYWADRQWRYSHHPL 197

Query: 117 AYNLMIDILSSTKYKAKQFRLV----------------CSMLDYMKRNNKVFVPVDVLLM 160
            Y  ++D+LS TK      R++                C M+ Y  R  K+   + VL +
Sbjct: 198 VYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSY-SRAGKLRNALRVLTL 256

Query: 161 ILK---------------------------QYTEKIKVK-TQPEINALNLLLDALCKCGL 192
           + K                           ++ E+++V   +P+I   N L+   C    
Sbjct: 257 MQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNR 316

Query: 193 VDYAETICKRVKNKVKP--NANTYNILGMQT-----------LEEMIQMGH-APDNFTYN 238
           ++ A  +   + +K  P    + Y ++G              +E+M+Q  +  PD  TYN
Sbjct: 317 IEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYN 376

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
           T I    K     +A    +    KG  I       Y+ ++ +  Q  RM+E  SL+  M
Sbjct: 377 TLIHMLSKHGHADDALAFLKEAEDKGFHIDKV---GYSAIVHSFCQKGRMDEAKSLVIDM 433

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
            +  C PDV TY  +++G C  G+++EA K L++M   G  P+ V+Y   L  LC +   
Sbjct: 434 YSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKS 493

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
            EA  +     E    P+  TY +++  +   G+   A +   EM ++G         ++
Sbjct: 494 LEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLL 553

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           I  L    KV EA   LEE +NKG  +    F + +     IGD+ A
Sbjct: 554 IQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEA 600



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 9/258 (3%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  TY   +D FC+   + EA  + + M   G     P   +Y  ++  L  + +  E 
Sbjct: 440 PDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGC---KPNTVSYTALLNGLCHSGKSLEA 496

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             ++         P+  TY  V+ G    GK+ EA     EM  KG+ P  V  N  ++ 
Sbjct: 497 REMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQS 556

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC N+   EA +     +  GC  +V  +  +I  + ++G+ + A     +M       D
Sbjct: 557 LCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPD 616

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
             TY  + D L    +++EA  L+ ++++KGL      F S + +    G +  +  L D
Sbjct: 617 AVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLD 676

Query: 472 HM------RKFYNPVIAR 483
            M      R  YN VI +
Sbjct: 677 RMVKRKPFRTIYNHVIEK 694



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 47/284 (16%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P   +   LL+ LC  G  ++  E I    ++   PNA TY ++               
Sbjct: 474 KPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACD 533

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
              EM++ G  P     N  I + C+ + V EA    E    KG  I+            
Sbjct: 534 LTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFC 593

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P A TY  +  AL +  R++E   L+  M++ G  P   
Sbjct: 594 QIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPV 653

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T++ V+   C  G+V++    L+ M  +   P    YN  ++ LCD  N +EA +L G++
Sbjct: 654 TFRSVIHRYCQWGRVDDMLNLLDRMVKR--KPFRTIYNHVIEKLCDFGNLEEAEKLLGKV 711

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           +         T ++L+    + G    A++   +M +R    D+
Sbjct: 712 LRTASKLDANTCHVLMESCLKKGVALSAYKVACQMFRRNLTPDL 755



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 30/244 (12%)

Query: 153 VPVDVLLMILKQYTEKIKVKTQPE--------INALNL--LLDALCKCGLVDYAETICKR 202
           V +++L+  L Q  + ++ K   E        IN +N   ++   C+ G ++ A ++ + 
Sbjct: 548 VEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLED 607

Query: 203 --VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
             + NK  P+A TY  L              + + +M+  G  P   T+ + I  +C+  
Sbjct: 608 MYLSNK-HPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWG 666

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            V +  +L + M  +      P    Y  +I  L     +EE   LLG ++ +    D +
Sbjct: 667 RVDDMLNLLDRMVKR-----KPFRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDAN 721

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T   ++E     G    AYK   +M  +   PD+       K L  + N  EA +L  R 
Sbjct: 722 TCHVLMESCLKKGVALSAYKVACQMFRRNLTPDLKLCEKVTKKLVLDGNLVEADKLMLRF 781

Query: 369 IEVG 372
           +E G
Sbjct: 782 VERG 785


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 151/331 (45%), Gaps = 26/331 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQT 221
           P++    +L+D   K G++  A   + + V++  +P   TY  L              + 
Sbjct: 522 PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANEL 581

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR-------------TKGSTIS 268
            E MI  G  P+  TY   ID +CK+  + +A  ++  MR              K +   
Sbjct: 582 FELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE 641

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  ++  L +  ++++   LL  M   GC P+   Y  +++G C A K++EA +
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M  +GY P++ TY+  +  L  +K  D  L++  +M+E  C P++  Y  +I    
Sbjct: 702 VFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++ + D A++    M+++GC  +V TY  MIDG     KV++   L  E+ +KG    + 
Sbjct: 762 KVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +   +      G L   + L + M++ Y P
Sbjct: 822 TYTVLINHCCATGHLDEAYALLEEMKQTYWP 852



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 124/276 (44%), Gaps = 32/276 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR---------------VKNKV--KPNANTYNIL 217
           P +     L+D  CK G ++ A  I  R               +KN V  KPN  TY  L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           LE M   G  P+   Y+  ID FCKA  + EA ++F  M  +G 
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGY 711

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
              +P   TY+ +I  L ++ R++    +L  M+ + C P++  Y E+++G+    K +E
Sbjct: 712 ---NPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDE 768

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AYK +  M  KG  P++VTY   +         D+ L L+  M   GC P+  TY +LI+
Sbjct: 769 AYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLIN 828

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
                G  D A+    EM +    + V +YC +I+G
Sbjct: 829 HCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEG 864



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 154/419 (36%), Gaps = 88/419 (21%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           L  D VV +L   +  E +  +FF+WAG Q  Y H P  Y  ++D+     Y        
Sbjct: 136 LNPDLVVEILSFLKSPE-LCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDR------ 188

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
                         VP + L  I     E +          LN+L+   C+ GL + A  
Sbjct: 189 --------------VPEEFLREIRGDDKEVLG-------KLLNVLIRKCCRNGLWNVALE 227

Query: 199 ICKRVKN-KVKPNANTYNILGMQTLE------------EMIQMGHAPDNFT--------- 236
              R+K+   KP   TYN L    L             EM ++G + D FT         
Sbjct: 228 ELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALC 287

Query: 237 -----------------------YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                                  YN  I   C+A    EA D    MR   ST   P  +
Sbjct: 288 KVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMR---STSCIPNVQ 344

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I++   +   ++  C  +L  MI  GC P  + +  ++   C +     AYK L++M
Sbjct: 345 TYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM 404

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDE---------ALRLYGRMIEVGCWPSVQTYNMLI 384
                 P  V YN  +  +C   +G E         A + Y  M+  G   +        
Sbjct: 405 EKCECKPGYVVYNILIGSIC---SGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFA 461

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 G+ + A++  HEM   G   D  TY  +I  L + S+VE A FL +E+   G+
Sbjct: 462 RCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGV 520



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 123/303 (40%), Gaps = 38/303 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-----------GMQTL 222
           P     N L+ A CK     YA  + K++ K + KP    YNIL           G  T 
Sbjct: 376 PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTF 435

Query: 223 E-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           E       EM+  G   +     +     C      +A  +   M   G     P   TY
Sbjct: 436 ELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV---PDTSTY 492

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L    R+E  F L   M  +G +PDV TY  +++    AG +++A+ +L+EM  
Sbjct: 493 SEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P +VTY   +      K    A  L+  MI  GC+P+V TY  LI  Y + G  + 
Sbjct: 553 DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEK 612

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DGL    KV++A  LLE + 
Sbjct: 613 ACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMF 672

Query: 440 NKG 442
             G
Sbjct: 673 VDG 675



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 123/307 (40%), Gaps = 53/307 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK   +D A E   K V+    PN  TY+ L             ++
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLK 736

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   ID   K     EA  L   M  KG     P   TY  MI 
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGC---KPNVVTYTAMID 793

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++++C  L   M + GC P+  TY  ++   C  G ++EAY  LEEM    +P 
Sbjct: 794 GFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPK 853

Query: 341 DIVTYNC------------------------------FLKVLCDN--KNG--DEALRLYG 366
            + +Y C                                KVL DN  K G  + AL L+ 
Sbjct: 854 HVSSY-CKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHK 912

Query: 367 RMIEVGCWPSVQT--YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            +I      + +   Y  LI  +    + D AFE +++M + G   D+ T+  ++ GL  
Sbjct: 913 EVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIR 972

Query: 425 CSKVEEA 431
             + EEA
Sbjct: 973 VRRWEEA 979



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 23/207 (11%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +M+D   +  KV    D  L + ++   K      P      +L++  C  G +D A  +
Sbjct: 790 AMIDGFGKAGKV----DKCLELFREMGSK---GCAPNFVTYTVLINHCCATGHLDEAYAL 842

Query: 200 CKRVKNKVKP-NANTYN----------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
            + +K    P + ++Y           IL +  LEE+ + G AP    Y   ID F KA 
Sbjct: 843 LEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAG 902

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKT--YAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
            +  A    E  +   S   S TAK   Y  +I +     +++  F L   MI  G +PD
Sbjct: 903 RLEVA---LELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPD 959

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           + T+  +L G+    + EEA +  + +
Sbjct: 960 LGTFVHLLMGLIRVRRWEEALQLSDSL 986



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 116/311 (37%), Gaps = 22/311 (7%)

Query: 178 NALNLLLDALCKC--GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI--------- 226
           N   L+LDA+  C  G  +    + ++ + K+ P+     IL      E+          
Sbjct: 105 NEAFLILDAIRNCDDGFGEKTHIVLRQFRQKLNPDL-VVEILSFLKSPELCVKFFLWAGR 163

Query: 227 QMGHAPDNFTYNTAIDTFCKARM--VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           Q+G+      Y   +D F +     V E     EF+R           K   ++I    +
Sbjct: 164 QIGYDHTPAVYIALLDVFERGSYDRVPE-----EFLREIRGDDKEVLGKLLNVLIRKCCR 218

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           N         LG + + G  P   TY  +++    A K++ A     EM   G   D  T
Sbjct: 219 NGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFT 278

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
              F + LC      EAL L  +   V   P+   YN +IS   E    + A +  + M 
Sbjct: 279 LGFFAQALCKVGKWREALSLIEKEDFV---PNTILYNKMISGLCEASFFEEAMDFLNRMR 335

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
              C  +V TY +++ G  +  ++     +L  ++ +G    Y  F+S +       D  
Sbjct: 336 STSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFS 395

Query: 465 AIHKLSDHMRK 475
             +KL   M K
Sbjct: 396 YAYKLLKKMEK 406


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 180/408 (44%), Gaps = 25/408 (6%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +I+  +A++  +E  L  L   L    V  VLQ  Q +E+IA  FF WAG Q  Y H+P+
Sbjct: 79  LIERRSAWNAKLEGDLRRLLRSLKPRQVCAVLQ-LQSDERIALDFFYWAGRQWRYRHDPI 137

Query: 117 AYNLMIDILSSTKY-KAKQFRLVCSMLDYMKRNNKVFVPVDV-------LLMILKQYTEK 168
            Y +M+ +LS TK  +  +  L   +   + R  + F  V V       L   ++  T  
Sbjct: 138 VYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMM 197

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---------- 217
            K   +P +   N  +  L     ++ A    +R++   + PN  TYN L          
Sbjct: 198 QKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQV 257

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              M+ + EM   G  PD  +Y T +   C+ + + E  +L E M         P   TY
Sbjct: 258 EHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLF--PDQVTY 315

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++  L ++   +E    L      G   D   Y  ++   C+ G+++ A + + EM  
Sbjct: 316 NTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMIT 375

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG  PD+VTY   +  LC     +EA ++  +M + GC P+  +Y  L++   + G    
Sbjct: 376 KGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLE 435

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A E  +  ++     +  TY V++ GL    K+ EAC ++ E++ KG 
Sbjct: 436 AREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGF 483



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 9/270 (3%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + + EMI  G +PD  TY   ++  CK   V EA  + + M   G     P   +Y  ++
Sbjct: 368 EIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGC---KPNTVSYTALL 424

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L Q+    E   ++         P+  TY  V+ G+   GK+ EA   + EM  KG+ 
Sbjct: 425 NGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFF 484

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P  V  N  +K LC  +  +EA +     +  GC  +   +  +I  + +    D A   
Sbjct: 485 PTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSL 544

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             +M       D  T+  +ID L    ++EEA     +++ KGL      + + + Q   
Sbjct: 545 LDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCK 604

Query: 460 IGDLGAIHKLSDHM------RKFYNPVIAR 483
           +G +  + KL   M      R  YN VI +
Sbjct: 605 MGRVEELIKLLGKMLSRSKCRTAYNQVIEK 634



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 140/343 (40%), Gaps = 45/343 (13%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILGMQTLEEM 225
           E I     P++     +++ LCK G V+ A+ + +++ K+  KPN  +Y  L    L  +
Sbjct: 372 EMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTAL----LNGL 427

Query: 226 IQMGHA----------------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
            Q G++                P+  TY+  +    +   ++EA D+   M TKG     
Sbjct: 428 CQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFF--- 484

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT     ++I +L    +M E    +   +N GC  +   +  V+ G C +  ++ A   
Sbjct: 485 PTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSL 544

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L++M      PD VT+   +  L      +EA     +M++ G  P+  TY  +I  Y +
Sbjct: 545 LDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCK 604

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA------------------ 431
           +G  +   +   +M  R   +    Y  +I+ L +    E A                  
Sbjct: 605 MGRVEELIKLLGKMLSRSKCRT--AYNQVIEKLCNFGNPEAADKVVGLVLRTASRIDANT 662

Query: 432 C-FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           C  L+E  ++KG+ L   K    +   ++I DL    KLS  +
Sbjct: 663 CHMLMESYLSKGIPLSAYKVACRMFDRNLIPDLKLCEKLSKKL 705



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EE +  G A +   + T I  FC++  +  A  L + M         P A T+  +I A
Sbjct: 510 MEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNK---HPDAVTFTAIIDA 566

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+EE       M+  G  P   TY+ V+   C  G+VEE  K L +M ++     
Sbjct: 567 LGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCR- 625

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  ++ LC+  N + A ++ G ++         T +ML+  Y   G P  A++   
Sbjct: 626 -TAYNQVIEKLCNFGNPEAADKVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAYKVAC 684

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            M  R    D+     +   L    K+EEA  L+ + V +G
Sbjct: 685 RMFDRNLIPDLKLCEKLSKKLVLEGKLEEADNLMLQFVQRG 725



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 66/138 (47%)

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            +  V+     AGK+  A + L  M   G  P+++  N  + VL      ++ALR   RM
Sbjct: 173 AFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERM 232

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
             VG  P+V TYN LI  Y +L + + A E   EM  +GC  D  +Y  ++  L    ++
Sbjct: 233 QLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRI 292

Query: 429 EEACFLLEEVVNKGLKLP 446
           +E   L+E++V      P
Sbjct: 293 KEVRNLMEKMVKDNKLFP 310


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 136/286 (47%), Gaps = 24/286 (8%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCG-----LVDYAETICKRVKNKVKPNANTYNIL---- 217
           E  K +  P+    N L++  C  G     LV +AE     VKN + PN  TY  L    
Sbjct: 298 EMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM----VKNGLSPNVVTYTTLINSM 353

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    M+ L++M   G  P+  TY T ID F +   + +A  + + M   G T   
Sbjct: 354 CKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFT--- 410

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I       RME+   LL  MI  G +PDV +Y  ++ G C   ++E+A++ 
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM  KG  PD+ TY+  ++ LC  +   E   L+  M+ +G  P   TY  LI+ Y  
Sbjct: 471 KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            G+ D A     EM ++G + D+ TY V+I+G    S+ +EA  LL
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLL 576



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 154/321 (47%), Gaps = 17/321 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------QT 221
           P +   N ++DA CK   +  A  + + +  K + PN  +YN++  G+          + 
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM +  + PD  T+NT I+ +C      +A  L   M   G    SP   TY  +I +
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGL---SPNVVTYTTLINS 352

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +   +      L  M + G  P+  TY  +++G    G +++AY+ ++EM   G+ P 
Sbjct: 353 MCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPT 412

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I+TYN  +   C     ++A  L   MIE G  P V +Y+ +IS +    E + AF+   
Sbjct: 413 IITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKV 472

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM  +G + DV TY  +I GL    ++ E C L +E+++ GL      + S +    + G
Sbjct: 473 EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEG 532

Query: 462 DLGAIHKLSDHM-RKFYNPVI 481
           DL    +L D M +K ++P I
Sbjct: 533 DLDKALRLHDEMIQKGFSPDI 553



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 136/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGL-VDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           P + + N +LDA+ +    V  AE I K  V++ V PN  TYNIL            G+ 
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM + G  P+  TYNT ID +CK R + EA  L   M  KG    +P   +Y ++I 
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG---LNPNLISYNVVIN 281

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  +M+E   +L  M     +PD  T+  ++ G C  G   +A     EM   G  P
Sbjct: 282 GLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSP 341

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTY   +  +C   N + A+    +M + G  P+ +TY  LI  + + G    A++  
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIM 401

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM + G    + TY  +I+G     ++E+A  LL+E++ +G 
Sbjct: 402 KEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 132/301 (43%), Gaps = 37/301 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN-------ILGMQT---- 221
            P       L+D   + G +  A  I K  V+N   P   TYN       ILG       
Sbjct: 375 HPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 222 -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EMI+ G  PD  +Y+T I  FC+ + + +A  L   M  KG    SP   TY+ +I 
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGI---SPDVATYSSLIQ 491

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  R+ E   L   M++ G  PD  TY  ++   C+ G +++A +  +EM  KG+ P
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP 551

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS--------------- 385
           DIVTYN  +          EA RL  +++     P+  TYN LI                
Sbjct: 552 DIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMK 611

Query: 386 ---MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              M   + E D   E+   M ++G   + + Y V+I G      +E+A  L +E+++ G
Sbjct: 612 GFCMKGLMNEADRVLES---MLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668

Query: 443 L 443
            
Sbjct: 669 F 669



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 39/251 (15%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           G  P   +YN  +D   + +   + A+ +F+ M   G    SP   TY I+I        
Sbjct: 162 GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGV---SPNVYTYNILIRGFCTAGN 218

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLE-------------------------------- 315
           +E      G M  +GCLP+V TY  +++                                
Sbjct: 219 LEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNV 278

Query: 316 ---GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
              G+C  G+++E  + LEEM  + Y PD VT+N  +   C+  N  +AL L+  M++ G
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+V TY  LI+   + G  + A E   +M  RG   +  TY  +IDG      +++A 
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 433 FLLEEVVNKGL 443
            +++E+V  G 
Sbjct: 399 QIMKEMVENGF 409



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 8/241 (3%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV---QNDRMEECFS 293
           ++  + +  +  ++ +A  +    ++ G     P   +Y  ++ A++   Q+ ++ E   
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFM---PGVLSYNAILDAVIRTKQSVKIAE--G 189

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +   M+ SG  P+V TY  ++ G C AG +E    F  EM   G  P++VTYN  +   C
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYC 249

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +   EA +L   M   G  P++ +YN++I+     G+     E   EM KR    D  
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRV 309

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           T+  +I+G  +     +A  L  E+V  GL      + + +  +   G+L    +  D M
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQM 369

Query: 474 R 474
           R
Sbjct: 370 R 370



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 34/245 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL----------- 222
           P++ + + ++   C+   ++ A +   + V   + P+  TY+ L +Q L           
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSL-IQGLCKQRRLGEVCD 504

Query: 223 --EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+ +G  PD  TY + I+ +C    + +A  L + M  KG    SP   TY ++I 
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF---SPDIVTYNVLIN 561

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE---------------GMCLAGKVEE 325
              +  R +E   LL  ++    +P+  TY  +++               G C+ G + E
Sbjct: 562 GFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNE 621

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLI 384
           A + LE M  KGY  +   YN  +       N ++A  LY  M+  G  P SV    +  
Sbjct: 622 ADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAK 681

Query: 385 SMYFE 389
           S+Y E
Sbjct: 682 SLYHE 686



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           TA++ A  +V    ++  E+ F  L +     C    + +  V++       + +A   +
Sbjct: 97  TAQSLAEEVVVNTVDETGEDLFQCLKNSYYQ-CKSSSAVFDLVVKSCARVNLINKALSIV 155

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDE-ALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
               + G+ P +++YN  L  +   K   + A  ++  M+E G  P+V TYN+LI  +  
Sbjct: 156 NLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCT 215

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G  +     + EM++ GC  +V TY  +ID      K+ EA  LL  +  KGL
Sbjct: 216 AGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 133/302 (44%), Gaps = 16/302 (5%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVK 208
           K  V   V+L+ L  Y   +     P     N+L+D LCK G+  D  +   + +   + 
Sbjct: 180 KALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIM 239

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN   Y +L             +Q L  M   G  PD  TYN  +   CK   V EA   
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQR 299

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              ++  G  +     K Y+ +I  L Q  R +E F     M+     PDV  Y  ++ G
Sbjct: 300 LVMLQDGGFALG---LKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRG 356

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              AG++E+A  FL+ M  KG+ PD   YN  LKVLCD+ + + A  L   M++      
Sbjct: 357 CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLD 416

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             T  ++I    + G  D A + + EM + GC   V TY  +IDG +   ++EEA  L  
Sbjct: 417 STTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFH 476

Query: 437 EV 438
           ++
Sbjct: 477 KM 478



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 117/265 (44%), Gaps = 15/265 (5%)

Query: 193 VDYAETICKRVKNKVKPNANTYN------------ILGMQTLEEMIQMGHAPDNFTYNTA 240
            D  +   +  + + +P A  YN            +L +     M+  G AP+  TYN  
Sbjct: 154 ADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVL 213

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +D  CK  M  +A  +F+ M  +G     P  K Y +++ +L    +++E   LLG M +
Sbjct: 214 MDGLCKQGMAGDALKMFDEMLDRGIM---PNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            GCLPD  TY   L G+C  G+V EA++ L  + + G+   +  Y+C +  L   +  DE
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
               Y  M+E    P V  Y ++I    E G  + A      M K+G   D   Y  ++ 
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
            L D   +E A  L  E++   L L
Sbjct: 391 VLCDHGDLERAHTLRSEMLQNNLVL 415



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 3/259 (1%)

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
           N   +Q    M +    P  F YNT +     + ++  A  L+  M   G    +P   T
Sbjct: 153 NADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGC---APNRAT 209

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y +++  L +     +   +   M++ G +P+V  Y  +L  +C AGK++EA + L  M 
Sbjct: 210 YNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMK 269

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +KG  PD VTYN FL  LC     +EA +    + + G    ++ Y+ LI   F+    D
Sbjct: 270 DKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFD 329

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
             F  +  M +R  + DV  Y +MI G  +  ++E+A   L+ +  KG       +++ L
Sbjct: 330 EGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVL 389

Query: 455 MQLSVIGDLGAIHKLSDHM 473
             L   GDL   H L   M
Sbjct: 390 KVLCDHGDLERAHTLRSEM 408



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 155/351 (44%), Gaps = 55/351 (15%)

Query: 74  SLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAK 133
           +LG+   +  + G+ Q  +F+E   +   M    + N + + + Y +MI   +    +A 
Sbjct: 309 ALGLKGYSCLIDGLFQARRFDEGFGYYKTML---ERNISPDVVLYTIMIRGCA----EAG 361

Query: 134 QFRLVCSMLDYMKRNNKVFVP----VDVLLMILKQYTEKIKVKT-QPEINALNLLLDA-- 186
           +     S LD MK+  K FVP     + +L +L  + +  +  T + E+   NL+LD+  
Sbjct: 362 RIEDALSFLDVMKK--KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTT 419

Query: 187 -------LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
                  LCK GLVD A                      MQ  +EM + G  P   TYN 
Sbjct: 420 QTIMICGLCKRGLVDEA----------------------MQIFDEMGEHGCDPTVMTYNA 457

Query: 240 AIDTFCKARMVTEAADLFE----------FMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            ID F +   + EA  LF           F+R          +++   ++  + Q+ ++ 
Sbjct: 458 LIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVL 517

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           + + LL  +I+SG +PDV TY  ++ G+C A  ++ A +  +E+  KG  PD +TY   +
Sbjct: 518 KAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLI 577

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             L      ++A+ L+  +++ G  PS+  YN ++     + +   A   W
Sbjct: 578 DGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 18/238 (7%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM+Q     D+ T    I   CK  +V EA  +F+ M   G     PT  TY  +I   
Sbjct: 406 SEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGC---DPTVMTYNALIDGF 462

Query: 283 VQNDRMEECFSLLGHMINSGCLP--------------DVSTYKEVLEGMCLAGKVEEAYK 328
            +  R+EE   +L H +  G  P              D  + ++++  MC +G+V +AYK
Sbjct: 463 YREGRLEEA-RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYK 521

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  + + G  PD+VTYN  +  LC  +N D A+RL+  +   G  P   TY  LI    
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
                + A   +  + + G +  +  Y  M+  L    K+ +A  L  + + K    P
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP 639



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 1/218 (0%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C A        LF F        S P    +A+ ++  + +   E  F  L     +G 
Sbjct: 75  LCAAIPAASRLRLFLFSALSPRLRSRPL-HAHAVSLLLRLSSHADEAMFDALADARAAGL 133

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
               S +  ++     AG+  +A +    M      P    YN  LK L D+     AL 
Sbjct: 134 PASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALA 193

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           LY RM+  GC P+  TYN+L+    + G    A + + EM  RG   +V  Y V++  L 
Sbjct: 194 LYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLC 253

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +  K++EA  LL  + +KG       ++++L  L  +G
Sbjct: 254 NAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVG 291



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 75/180 (41%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           ++  +A ++ A     R  +       M      P    Y  +L+ +  +G +  A    
Sbjct: 136 SSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALY 195

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             M   G  P+  TYN  +  LC      +AL+++  M++ G  P+V+ Y +L+S     
Sbjct: 196 NRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+ D A +    M  +GC  D  TY   + GL    +V EA   L  + + G  L  + +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 39/187 (20%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  +I  G  PD  TYNT I+  CKAR +  A  LF+ ++ KG    SP   TY  +I  
Sbjct: 523 LRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI---SPDEITYGTLIDG 579

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA-----------YKF- 329
           L++  R  +   L  +++ SG  P +S Y  ++  +C   K+ +A           Y F 
Sbjct: 580 LLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFP 639

Query: 330 --LEEMGNK------GYPPDIV----------------TYNCFLKVLCDNKNGDEALRLY 365
              E + N       G   D V                 Y  +L  LC  +  D+ALR++
Sbjct: 640 VESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGLCQVRRTDDALRIF 699

Query: 366 GRMIEVG 372
             + E G
Sbjct: 700 HTLQEFG 706


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 144/312 (46%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P  N  N+L+   CK G L + A  I    +N + P+  TYN+L              + 
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM  +   PD  +YNT I+   +   ++EA  L E M  KG     P A T+ IM+  
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGV---KPNAVTHNIMVKW 392

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +M++  + +  M  SG  PD  TY  ++ G C AG + EA++ ++EMG K    D
Sbjct: 393 YCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMD 452

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT N  L+ LC  K  +EA +L     + G +    +Y  LI  YF+ G  D A + W 
Sbjct: 453 SVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWD 512

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM ++       TY  +I GL  C K E+A   L E++  GL      +++ L      G
Sbjct: 513 EMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG 572

Query: 462 DLGAIHKLSDHM 473
           D+    +  + M
Sbjct: 573 DVEKAFQFHNKM 584



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 154/354 (43%), Gaps = 48/354 (13%)

Query: 170 KVKTQPEINALNLLLDALCK---CGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           +++ +P +   N LL++L +      V ++ E     +K  + PN NT+NI+        
Sbjct: 163 RLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLEN 222

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---- 269
                ++ L  M +   +PDN TYNT +DT CK   + +A DL   M+++G   +     
Sbjct: 223 KFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYN 282

Query: 270 ----------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
                                       P   TY ++I  L    R+EE F L   M N 
Sbjct: 283 ILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENL 342

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
             LPDV +Y  ++ G     K+ EA+K LEEM  KG  P+ VT+N  +K  C     D+A
Sbjct: 343 KLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDA 402

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
                +M E G  P   TYN LI+ Y + G    AF T  EM ++    D  T   ++  
Sbjct: 403 SNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRT 462

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           L    K+EEA  LL     +G  +    + + ++     G++    KL D M++
Sbjct: 463 LCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKE 516



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 167/391 (42%), Gaps = 59/391 (15%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM------LDYMKRNNKV-----FVPVD 156
           Q+N   +   YN++I+ L +     + F+L   M       D +  N  +     +  + 
Sbjct: 306 QNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKIS 365

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE-TICKRVKNKVKPNANTYN 215
               +L++ +EK     +P     N+++   CK G +D A  TI K  ++   P+  TYN
Sbjct: 366 EAFKLLEEMSEK---GVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYN 422

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L              +T++EM +     D+ T NT + T C+ + + EA  L    R +
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482

Query: 264 GSTISS--------------------------------PTAKTYAIMIVALVQNDRMEEC 291
           G  I                                  P+  TY  +I  L Q  + E+ 
Sbjct: 483 GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQA 542

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            S L  ++ SG LPD +TY  +L G C  G VE+A++F  +M    + PD+ T N  L+ 
Sbjct: 543 ISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRG 602

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC     ++AL+L+   +  G      TYN LI+   + G  D AF    EM+++    D
Sbjct: 603 LCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPD 662

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             TY  +I  L D  ++ EA   + +++ KG
Sbjct: 663 HYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 17/323 (5%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------ 217
           +K  P++ + N L++   +   +  A  + + +  K VKPNA T+NI+            
Sbjct: 342 LKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDD 401

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
              T+ +M + G +PD  TYNT I+ +CKA  + EA    + M  K   + S T  T   
Sbjct: 402 ASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNT--- 458

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L +  ++EE + LL      G   D  +Y  ++ G    G V+ A K  +EM  K 
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE 518

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P  VTYNC +  LC     ++A+     ++E G  P   TYN ++  Y   G+ + AF
Sbjct: 519 IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAF 578

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +  ++M +     DV T  +++ GL     +E+A  L    V+KG  +    +++ +  L
Sbjct: 579 QFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSL 638

Query: 458 SVIGDL-GAIHKLSDHMRKFYNP 479
              G L  A + LS+   K   P
Sbjct: 639 CKEGRLDDAFNLLSEMEEKELGP 661



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 107/285 (37%), Gaps = 48/285 (16%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           LK + E  + +  P     N ++  LC+CG  + A                      +  
Sbjct: 508 LKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQA----------------------ISK 545

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L E+++ G  PD  TYNT +  +C+   V +A   F+F          P   T  I++  
Sbjct: 546 LNELLESGLLPDETTYNTILHGYCREGDVEKA---FQFHNKMVENSFKPDVFTCNILLRG 602

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L     +E+   L    ++ G   D  TY  ++  +C  G++++A+  L EM  K   PD
Sbjct: 603 LCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPD 662

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-----------------------VQ 378
             TYN  +  L D+    EA     +M+E G  P                          
Sbjct: 663 HYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSV 722

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
            Y+  I      G+   A   + E  ++G   D  TY  ++DGL 
Sbjct: 723 AYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLI 767


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 145/321 (45%), Gaps = 16/321 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P+   LN+LL+ LC    V     +   + +    P+  TY  L                
Sbjct: 129 PDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALL 188

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS---SPTAKTYAIM 278
              M ++G  P+  TY T +   C+   ++ A  L + M    S       P   +Y+I+
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSII 248

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I AL ++ R +E   L   M   G  P V +Y  ++ G C  GK EEA +   EM N+G 
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGV 308

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P++VT+N  + VLC      EA  L   MI+ G  P++ TYN LI  +  +G+ + A E
Sbjct: 309 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 368

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +  M  +GC  DV  Y V+I+G    SKVEEA  L   ++  G +   + + + L  L 
Sbjct: 369 LFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLF 428

Query: 459 VIGDLGAIHKLSDHMRKFYNP 479
             G +G   KL   M+ +  P
Sbjct: 429 QGGKVGDAKKLFGVMKVYGIP 449



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 135/318 (42%), Gaps = 60/318 (18%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           + + E +    QP +   N+L+D LCK G V  A+ +                      L
Sbjct: 298 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDL----------------------L 335

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E MIQ G  P+  TYN+ I+ FC    +  A +LF  M +KG     P    Y ++I   
Sbjct: 336 EVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC---EPDVICYTVLINGY 392

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  ++EE   L   M+  G  PDV TY  +L G+   GKV +A K    M   G P D+
Sbjct: 393 CKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDL 452

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRM------IEVGCW---------------------- 374
             Y  FL  LC N    EA+ L+ ++      +++ C+                      
Sbjct: 453 YIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEK 512

Query: 375 -------PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
                  P V TYN++I  +   G+   A   + +M+K GC  D  TY  +I G F+  K
Sbjct: 513 LPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKK 572

Query: 428 VEEACFLLEEVVNKGLKL 445
           +E+   LL  +V + + L
Sbjct: 573 LEKVVELLHMMVQRDVSL 590



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 22/318 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-------KVKPNANTYNIL 217
           +T   K+   P       L+  LC+ G +  A  + + + N         KP   +Y+I+
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSII 248

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                            EEM   G  P   +Y + I  FC      EA  LF  M  +G 
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGV 308

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   T+ ++I  L +  ++ E   LL  MI  G +P++ TY  ++EG CL G +  
Sbjct: 309 ---QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNS 365

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +    M +KG  PD++ Y   +   C     +EA++LY  M++VG  P V+TY  L++
Sbjct: 366 ARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLT 425

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             F+ G+   A + +  M   G   D+  Y + ++GL     + EA  L  ++ +  +KL
Sbjct: 426 GLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKL 485

Query: 446 PYRKFDSYLMQLSVIGDL 463
               F+  +  L   G L
Sbjct: 486 DIECFNCLIDGLCKAGKL 503



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 14/226 (6%)

Query: 231 APDNF----TYNTAIDTF---CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +P NF    ++   +  F   CK   +T A   F+F      +  +P   ++  ++  L 
Sbjct: 49  SPQNFNTPISFQQQLSMFLHNCKTGNIT-ATQAFQFFHLMMYSNPTPPLSSFTHLLSGLA 107

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +     + F L   M  SG  PD  T   +L  +C   +V E    +  +  +GY PDIV
Sbjct: 108 KIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIV 167

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +K LC      +A  L+ RM ++GC P+  TY  L+      G    A +   EM
Sbjct: 168 TYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEM 227

Query: 404 DKRGCAQDVD------TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                   ++      +Y ++ID L    + +EA  L EE+  +G+
Sbjct: 228 LNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGM 273


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 191/434 (44%), Gaps = 35/434 (8%)

Query: 27  QSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG--VPLTTDSV 84
           QS + K   L  K+  + S    DV+ +Y+A+I    A   +EKAL  L     L  D  
Sbjct: 316 QSRVDKALQLFKKM--QKSGFAPDVS-VYDALIGGLCAKKEIEKALHLLSEMKELGIDPD 372

Query: 85  VGVLQR---FQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM 141
           + +L +   +  EE   +R         +     L YN +++ L + K   K + L+ +M
Sbjct: 373 IQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAM 432

Query: 142 LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK 201
                 +N     V+   M+        K   +P+  + ++++D LC  G +D A ++ +
Sbjct: 433 TGDNYTDN---FEVNKFFMV--------KEMVRPDTTSFSIVIDGLCNTGKLDLALSLFR 481

Query: 202 -RVKNKVKPNANTYNILGMQT------------LEEMIQMGHAPDNFTYNTAIDTFCKAR 248
             V+   K N   YN L  +             L+EM   G  P  FT+N+     C+  
Sbjct: 482 DMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRRE 541

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            VT A D+   MR  G     P  K Y +++  L +  R  E  + L  M+  G LPD+ 
Sbjct: 542 DVTGALDMVREMRVHGH---EPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIV 598

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            Y   ++G      V++A +   ++  +GY PD+V YN  +   C  K   EA  +   M
Sbjct: 599 AYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEM 658

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  G  PSV TYN+LI  + + G+ D AF     M  +    +V TY  +IDGL +  + 
Sbjct: 659 VAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRP 718

Query: 429 EEACFLLEEVVNKG 442
           ++A  L  E+  KG
Sbjct: 719 DDAIHLWNEMRGKG 732



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 15/248 (6%)

Query: 199 ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
           +CKR     K +A   N L      EM++ G  PD   Y+ AID F K + V +A ++F 
Sbjct: 572 LCKR-----KRSAEACNFLA-----EMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFR 621

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            +  +G     P    Y  +I    +  R+ E   +L  M+  G +P V TY  +++G C
Sbjct: 622 DICARGYC---PDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWC 678

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             G +++A+  L  M  K   P+++TY   +  LC+    D+A+ L+  M   GC P+  
Sbjct: 679 KNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRI 738

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           ++  LI    + G PD A   + EM +R    D   Y  +I           A  +L+E+
Sbjct: 739 SFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALITSFISNKNPTLAFEILKEM 797

Query: 439 VNKGLKLP 446
           V KG K P
Sbjct: 798 VAKG-KFP 804



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 175/473 (36%), Gaps = 124/473 (26%)

Query: 66  DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL 125
           DN E  L + G  LT + V  VL   +   KIA+RFF WA  Q  + H    YN M   L
Sbjct: 82  DNQE--LRNFGSMLTHEVVENVLSGLK-SWKIAYRFFNWASDQGGFNHNCYTYNAMASCL 138

Query: 126 SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLD 185
           S  +  A                     P+ +L M      + +  +      AL   + 
Sbjct: 139 SHARQNA---------------------PLSLLSM------DIVNSRCAMSPGALGFFIR 171

Query: 186 ALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GMQTLEEMIQMGHA 231
            L   GLV+ A  +  +VK      PN+ ++N L                L+EM   G  
Sbjct: 172 CLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWE 231

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA------------------- 272
           PD +T  + +  +C +R   +A  +F  +  +G       +                   
Sbjct: 232 PDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDKAFELI 291

Query: 273 ------------KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
                       KT+ ++I   V+  R+++   L   M  SG  PDVS Y  ++ G+C  
Sbjct: 292 ERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAK 351

Query: 321 GKVEEAYKFLEEMGNKGYPPDI---------------------------------VTYNC 347
            ++E+A   L EM   G  PDI                                 + YN 
Sbjct: 352 KEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNS 411

Query: 348 FLKVLCDNKNGDEALRL--------YGRMIEVGCW--------PSVQTYNMLISMYFELG 391
            L  L + K+ D+A  L        Y    EV  +        P   +++++I      G
Sbjct: 412 VLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTG 471

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + D A   + +M + GC Q+V  Y  +ID L + +++EE   LL+E+   G +
Sbjct: 472 KLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFR 524



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           ++EM++    PD  +++  ID  C    +  A  LF  M   G          Y  +I  
Sbjct: 449 VKEMVR----PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGC---KQNVLLYNNLIDK 501

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  ++R+EEC+ LL  M  SG  P   T+  +   +C    V  A   + EM   G+ P 
Sbjct: 502 LSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPW 561

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I  Y   +K LC  K   EA      M+  G  P +  Y+  I  + ++   D A E + 
Sbjct: 562 IKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFR 621

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++  RG   DV  Y  +I+G     +V EA  +L+E+V KGL
Sbjct: 622 DICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 663



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 49/253 (19%)

Query: 162 LKQYTEKIK--VKTQPEINALNLLLDALCKCGLVD---YAETICKRVKNKVKPNANTYNI 216
           +K YT  +K   K +    A N L + + +  L D   Y+  I   VK K    A     
Sbjct: 562 IKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQA----- 616

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             ++   ++   G+ PD   YNT I+ FCK + V+EA D+ + M  KG     P+  TY 
Sbjct: 617 --LEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLV---PSVVTYN 671

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++I    +N  +++ F  L  M+     P+V TY  +++G+C AG+ ++A     EM  K
Sbjct: 672 LLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGK 731

Query: 337 G-------------------YP---------------PDIVTYNCFLKVLCDNKNGDEAL 362
           G                   +P               PD + Y   +     NKN   A 
Sbjct: 732 GCSPNRISFIALIHGLCKCGWPDAALLYFREMGERETPDTIVYVALITSFISNKNPTLAF 791

Query: 363 RLYGRMIEVGCWP 375
            +   M+  G +P
Sbjct: 792 EILKEMVAKGKFP 804



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 2/180 (1%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C+P+  ++  +LE +  +G ++     L+EM + G+ PD  T    L+  C+++  D+AL
Sbjct: 195 CVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKAL 254

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++  +   G W      ++L+  + + GE D AFE    M+  G   +  T+CV+I G 
Sbjct: 255 SVFNEIYGRG-WVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGF 313

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVI 481
              S+V++A  L +++   G       +D+ +  L    ++  A+H LS+      +P I
Sbjct: 314 VRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDI 373


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 144/312 (46%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P  N  N+L+   CK G L + A  I    +N + P+  TYN+L              + 
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM  +   PD  +YNT I+   +   ++EA  L E M  KG     P A T+ IM+  
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGV---KPNAVTHNIMVKW 392

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +M++  + +  M  SG  PD  TY  ++ G C AG + EA++ ++EMG K    D
Sbjct: 393 YCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMD 452

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT N  L+ LC  K  +EA +L     + G +    +Y  LI  YF+ G  D A + W 
Sbjct: 453 SVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWD 512

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM ++       TY  +I GL  C K E+A   L E++  GL      +++ L      G
Sbjct: 513 EMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG 572

Query: 462 DLGAIHKLSDHM 473
           D+    +  + M
Sbjct: 573 DVEKAFQFHNKM 584



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 146/324 (45%), Gaps = 16/324 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALC-KCGLVDYAETICKRVKNKVKPNANTYNIL------ 217
           + + IK+   P +N  N+++   C +    D  E +    K    P+  TYN +      
Sbjct: 196 FNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCK 255

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L +M   G  P+  TYN  +  +CK   + EAA++ E M T+ + +  P 
Sbjct: 256 KGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM-TQNNLL--PD 312

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY ++I  L    R+EE F L   M N   LPDV +Y  ++ G     K+ EA+K LE
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLE 372

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  KG  P+ VT+N  +K  C     D+A     +M E G  P   TYN LI+ Y + G
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               AF T  EM ++    D  T   ++  L    K+EEA  LL     +G  +    + 
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRK 475
           + ++     G++    KL D M++
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKE 516



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 167/391 (42%), Gaps = 59/391 (15%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM------LDYMKRNNKV-----FVPVD 156
           Q+N   +   YN++I+ L +     + F+L   M       D +  N  +     +  + 
Sbjct: 306 QNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKIS 365

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE-TICKRVKNKVKPNANTYN 215
               +L++ +EK     +P     N+++   CK G +D A  TI K  ++   P+  TYN
Sbjct: 366 EAFKLLEEMSEK---GVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYN 422

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L              +T++EM +     D+ T NT + T C+ + + EA  L    R +
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482

Query: 264 GSTISS--------------------------------PTAKTYAIMIVALVQNDRMEEC 291
           G  I                                  P+  TY  +I  L Q  + E+ 
Sbjct: 483 GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQA 542

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            S L  ++ SG LPD +TY  +L G C  G VE+A++F  +M    + PD+ T N  L+ 
Sbjct: 543 ISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRG 602

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC     ++AL+L+   +  G      TYN LI+   + G  D AF    EM+++    D
Sbjct: 603 LCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPD 662

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             TY  +I  L D  ++ EA   + +++ KG
Sbjct: 663 HYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 17/323 (5%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------ 217
           +K  P++ + N L++   +   +  A  + + +  K VKPNA T+NI+            
Sbjct: 342 LKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDD 401

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
              T+ +M + G +PD  TYNT I+ +CKA  + EA    + M  K   + S T  T   
Sbjct: 402 ASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNT--- 458

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L +  ++EE + LL      G   D  +Y  ++ G    G V+ A K  +EM  K 
Sbjct: 459 ILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE 518

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P  VTYNC +  LC     ++A+     ++E G  P   TYN ++  Y   G+ + AF
Sbjct: 519 IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAF 578

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +  ++M +     DV T  +++ GL     +E+A  L    V+KG  +    +++ +  L
Sbjct: 579 QFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSL 638

Query: 458 SVIGDL-GAIHKLSDHMRKFYNP 479
              G L  A + LS+   K   P
Sbjct: 639 CKEGRLDDAFNLLSEMEEKELGP 661



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 108/285 (37%), Gaps = 48/285 (16%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           LK + E  + +  P     N ++  LC+CG  + A                      +  
Sbjct: 508 LKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQA----------------------ISK 545

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L E+++ G  PD  TYNT +  +C+   V +A   F+F          P   T  I++  
Sbjct: 546 LNELLESGLLPDETTYNTILHGYCREGDVEKA---FQFHNKMVENSFKPDVFTCNILLRG 602

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L     +E+   L    ++ G   D  TY  ++  +C  G++++A+  L EM  K   PD
Sbjct: 603 LCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPD 662

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-----------------------SVQ 378
             TYN  +  L D+    EA     +M+E G  P                       S  
Sbjct: 663 HYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSV 722

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
            Y+  I      G+   A   + E  ++G   D  TY  ++DGL 
Sbjct: 723 AYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLI 767


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 171/392 (43%), Gaps = 43/392 (10%)

Query: 95  EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
           E+ A    M A   DN   + ++Y+ +I          K + L C MLD+        +P
Sbjct: 101 EEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDH-------GIP 153

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANT 213
                               P +   N ++D LCK   +D AE + ++ +   + PN  T
Sbjct: 154 --------------------PNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTT 193

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L             ++ L+EM + G  P+  TYN  ID  CK+    EA ++F  M 
Sbjct: 194 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMI 253

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P A TY  ++        + E  ++   M+ +G   +  T+   +   C  G
Sbjct: 254 QSGP---KPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCG 310

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +++EA     +M   G+ PDIVTY   +  LC     D+A+  + +MI+ G  P++ T+ 
Sbjct: 311 RLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFT 370

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI  +   G+ + A E ++EM  RG   DV  +  MID LF   KV EA  L + +   
Sbjct: 371 TLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRA 430

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G K     +++ +    + G++G + KL D M
Sbjct: 431 GAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM 462



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 144/320 (45%), Gaps = 42/320 (13%)

Query: 164 QYTEKIKV-------KTQPEINALNLLLDALCKCGL-VDYAETICKRVKNKVKPNANTY- 214
           Q+TE +++         +P +   N+L+D LCK G   +  E     +++  KP+A TY 
Sbjct: 206 QWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYG 265

Query: 215 ----------NILGMQTLEE-MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
                     N++ M  +++ M+Q G   ++ T++  I  +CK   + EA+  F  M+  
Sbjct: 266 SLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQL 325

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY  +I  L +  R+++  S    MI+ G  P++ T+  ++ G  + GK 
Sbjct: 326 GFM---PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKW 382

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E+A +   EM ++G PPD+  +   +  L       EA +L+  M   G  P+V +YN +
Sbjct: 383 EKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTM 442

Query: 384 ISMYFELGE-----------------PDG-AFETWHE-MDKRGCAQDVDTYCVMIDGLFD 424
           I  YF  GE                 P    F T  + M   G   DVDT   +ID   +
Sbjct: 443 IHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCE 502

Query: 425 CSKVEEACFLLEEVVNKGLK 444
             ++E+   L  E++ K  K
Sbjct: 503 DGRIEDILTLFREMLGKADK 522



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           KV P+  T+ IL            G   L ++I+ G   D   +   + T C  +  ++A
Sbjct: 8   KVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDA 67

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYK 311
            ++   +R       +P   +Y+ ++  L    + EE   L+  M   G  C PDV +Y 
Sbjct: 68  MNIV--LRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYS 125

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            V+ G    G V +AY    +M + G PP++VT N  +  LC  +  D+A  +  +MI+ 
Sbjct: 126 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 185

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              P+  TYN LI  Y   G+   A     EM + G   +V TY ++ID L       EA
Sbjct: 186 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEA 245

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +   ++  G K     + S L   +  G+L  ++ + D M
Sbjct: 246 REIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLM 287



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 35/204 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQT 221
           P+I     ++D LCK G +D A +  C+ + + + PN  T+  L              + 
Sbjct: 329 PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEEL 388

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+  G  PD   +   ID   K   VTEA  LF+ M   G+    P   +Y  MI  
Sbjct: 389 FYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGA---KPNVVSYNTMIHG 445

Query: 282 LVQNDRMEECF-------------------SLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
                 + E                     +LL  M++ G  PDV T K +++  C  G+
Sbjct: 446 YFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGR 505

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYN 346
           +E+      EM  K    D +T N
Sbjct: 506 IEDILTLFREMLGKADKTDTITEN 529


>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Brachypodium distachyon]
          Length = 501

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 194/434 (44%), Gaps = 72/434 (16%)

Query: 39  KVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFE---- 94
           K F+E S  V  + K+   ++ +   + +  +ALD + + ++ + V  VL R        
Sbjct: 95  KYFEELSLEVDRIVKI---LLQDGPGF-SARQALDEMNLRVSNELVREVLSRIVVSVDSV 150

Query: 95  -----EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149
                 ++A++FF+WAG Q+ Y H    YNL++ + +            C  +  M R  
Sbjct: 151 NRERFPRLAYKFFLWAGQQEGYHHSTGMYNLVMKVFAQ-----------CGEVKAMWR-- 197

Query: 150 KVFVPVDVLLMILKQYTE---KIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKN 205
                      +L++ TE    I  +T       +LL+   C CG       + +R +K+
Sbjct: 198 -----------LLEEMTENGLSISART------FHLLI---CTCGQAGLRRRLVERFIKS 237

Query: 206 K---VKPNANTYNILGMQTL-------------EEMIQMGHAPDNFTYNTAIDTFCKARM 249
                +P  N++N + + TL             ++M+  GH+PD  TYN  +    +A+ 
Sbjct: 238 SSFNYRPFRNSFNAI-LHTLLTIEQYSLIEWVHQKMLMEGHSPDVLTYNIVM----RAKY 292

Query: 250 VTEAADLFE-FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
           +    D F   +   G    +P   TY I++  L + D+     +LL +M + GC+P V 
Sbjct: 293 MLGKLDQFHRLLDEMGKNGLTPDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVL 352

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            +  +++G+  AG +E    F +EM  KG  PD+V Y   +         +EA +L+  M
Sbjct: 353 HFTNLIDGLSRAGNLEACKYFFDEMMKKGCEPDVVCYTVMITGYVAAAELEEAQKLFDDM 412

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  G  P+V TYN +I     +GE D A     +MD RGC  +   Y  ++  L +  K 
Sbjct: 413 LVRGKLPNVYTYNTMIRGLCIVGEFDKACSMLKDMDLRGCTPNFSVYSTLVCRLRNAGKD 472

Query: 429 EEACFLLEEVVNKG 442
            EA  +++ + NKG
Sbjct: 473 AEANNVIKYMANKG 486



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-SPTAKTYAIM 278
           + LEEM + G +    T++  I T  +A +     + F     K S+ +  P   ++  +
Sbjct: 197 RLLEEMTENGLSISARTFHLLICTCGQAGLRRRLVERF----IKSSSFNYRPFRNSFNAI 252

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L+  ++      +   M+  G  PDV TY  V+    + GK+++ ++ L+EMG  G 
Sbjct: 253 LHTLLTIEQYSLIEWVHQKMLMEGHSPDVLTYNIVMRAKYMLGKLDQFHRLLDEMGKNGL 312

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+ TYN  L VL        AL L   M +VGC PSV  +  LI      G  +    
Sbjct: 313 TPDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVLHFTNLIDGLSRAGNLEACKY 372

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYLMQL 457
            + EM K+GC  DV  Y VMI G    +++EEA  L ++++ +G KLP    +++ +  L
Sbjct: 373 FFDEMMKKGCEPDVVCYTVMITGYVAAAELEEAQKLFDDMLVRG-KLPNVYTYNTMIRGL 431

Query: 458 SVIGDL 463
            ++G+ 
Sbjct: 432 CIVGEF 437



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 6/204 (2%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM- 333
           Y +++    Q   ++  + LL  M  +G      T+  ++   C  G+     + +E   
Sbjct: 179 YNLVMKVFAQCGEVKAMWRLLEEMTENGLSISARTFHLLI---CTCGQAGLRRRLVERFI 235

Query: 334 --GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
              +  Y P   ++N  L  L   +       ++ +M+  G  P V TYN+++   + LG
Sbjct: 236 KSSSFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMLMEGHSPDVLTYNIVMRAKYMLG 295

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + D       EM K G   D+ TY +++  L    K   A  LL  + + G       F 
Sbjct: 296 KLDQFHRLLDEMGKNGLTPDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVLHFT 355

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRK 475
           + +  LS  G+L A     D M K
Sbjct: 356 NLIDGLSRAGNLEACKYFFDEMMK 379


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 27/332 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P++     LLD  CK GL++ A      ++ +   PN  TY  L              + 
Sbjct: 155 PDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEI 214

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKA-----------RMVTEAADLFE---FMRTKGSTI 267
            E M+  G  P+  TY   ID  CKA           RM  +  D+ +   + R   S +
Sbjct: 215 FEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSEL 274

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  ++  L +  +++E   LL  M   GC P+   Y  +++G C  GK++EA 
Sbjct: 275 KEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQ 334

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +   +M   G  P++ TY+  +  L  +K  D AL++  +M+E  C P+V  Y  ++   
Sbjct: 335 EVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGL 394

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            ++G+ D A+     M+++GC  +V TY  MIDG     +V+    LL+ + +KG    +
Sbjct: 395 CKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNF 454

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             +   +      G L   HKL + M++ Y P
Sbjct: 455 ITYRVLINHCCAAGLLDDAHKLLEEMKQTYWP 486



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 120/278 (43%), Gaps = 33/278 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KV-----------------KPNANTYNI 216
           P I     L+D  CK G  + A  I  R+KN KV                 +PN  TY  
Sbjct: 225 PNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGA 284

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L                LE M   G  P+   Y+  ID FCK   + EA ++F  M   G
Sbjct: 285 LVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHG 344

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP   TY+ +I  L ++ R++    +L  M+ + C P+V  Y E+++G+C  GK +
Sbjct: 345 C---SPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTD 401

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EAY+ +  M  KG  P++VTY   +         D  L L   M   GC P+  TY +LI
Sbjct: 402 EAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLI 461

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +     G  D A +   EM +    + +  Y  +I+G 
Sbjct: 462 NHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF 499



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKAR------MVTEAADLFEFMRTKGSTISSPTAK 273
           + L++M+  G+ P    YN  I   C         ++  A   +  M   G  ++     
Sbjct: 32  KLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVC 91

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +   +  +    + E+ ++++  M++ G +PD STY +V+  +C A KVE+A++  +EM
Sbjct: 92  NFTRCLCCI---GKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEM 148

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  PD+ TY   L   C     ++A   +  M + GC P+V TY  LI  Y +  + 
Sbjct: 149 KRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKL 208

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-----YR 448
             A E +  M   GC  ++ TY  +IDG     + E+AC +   + N  + +P     +R
Sbjct: 209 SRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFR 268

Query: 449 KFDSYLMQLSVI 460
             DS L + +V+
Sbjct: 269 IVDSELKEPNVV 280



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 122/305 (40%), Gaps = 52/305 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A E   K + +   PN  TY+ L             ++
Sbjct: 311 EPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALK 370

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   +D  CK     EA  L   M  KG     P   TY  MI 
Sbjct: 371 VLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCY---PNVVTYTAMID 427

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  R++ C  LL  M + GC P+  TY+ ++   C AG +++A+K LEEM    +P 
Sbjct: 428 GFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPK 487

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG--------- 391
            I  Y   ++    +     +L L   + E G  P +  Y +LI  + + G         
Sbjct: 488 HIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELH 545

Query: 392 -------------------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
                                    + D AF+ + +M +RG   ++     +I GL    
Sbjct: 546 EELSSFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVG 605

Query: 427 KVEEA 431
           K EEA
Sbjct: 606 KWEEA 610



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           MI  GC P    +  ++   C +G    AYK L++M   GY P  V YN  +  +C  ++
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 358 GDE------ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                    A R Y  M+E+G   +             +G+ + A+    EM  +G   D
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
             TY  +I  L + SKVE+A  L +E+   G+      + + L +   +G +       D
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 472 HMRK 475
            M++
Sbjct: 182 EMQQ 185



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 44/248 (17%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           + LK  T+ ++    P +     ++D LCK G  D A  +   ++ K   PN  TY  + 
Sbjct: 367 LALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMI 426

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK--- 263
                       ++ L+ M   G AP+  TY   I+  C A ++ +A  L E M+     
Sbjct: 427 DGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWP 486

Query: 264 ---------------------------GSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
                                          S P    Y ++I   ++  R+E    L  
Sbjct: 487 KHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALEL-H 545

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
             ++S      +TY  ++E + LA KV++A+K   +M  +G+ P++    C +K L    
Sbjct: 546 EELSSFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVG 605

Query: 357 NGDEALRL 364
             +EAL+L
Sbjct: 606 KWEEALQL 613



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 18/186 (9%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANT 213
           VD  L +L+  T K      P      +L++  C  GL+D A  + + +K    P +   
Sbjct: 435 VDRCLELLQLMTSK---GCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGM 491

Query: 214 YN----------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           Y           +  +  L E+ + G  P    Y   ID F KA  +  A +L E +   
Sbjct: 492 YRKVIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEEL--- 548

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
            S+ S+    TY  +I +L    ++++ F L   M   G +P++S    +++G+   GK 
Sbjct: 549 -SSFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKW 607

Query: 324 EEAYKF 329
           EEA + 
Sbjct: 608 EEALQL 613


>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 186/427 (43%), Gaps = 24/427 (5%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           +S   KL    I        +E AL ++G+ LT D V  V+ R     +    FF WA  
Sbjct: 58  LSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVK 117

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM-LDYMKRNNKVFVPVDVLLMILKQYT 166
           Q     +   YN++I  L   K+     +++  M +  +  N +    V    +  +Q +
Sbjct: 118 QPTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVS 177

Query: 167 EKIKVKTQPE-------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           + I++    E         +LN+LL  LC+   V  A      +K  +  N  TYNI+  
Sbjct: 178 KAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIG 237

Query: 218 GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
           G           + L+ M+  G +P+  T++  I+   +A  + +A ++F  M   G   
Sbjct: 238 GWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCV- 296

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P A  Y  +I   +     +EC      M++S C P++ TY +++     A KV +A 
Sbjct: 297 --PNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADAL 354

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L+EM  +G  P       F++ LC       A+ +Y +  +VGC  S+  Y +L+   
Sbjct: 355 EMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRL 414

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
              G+       W EM + G + D + Y  +I+GL +  +++ A  ++EE ++KG   P 
Sbjct: 415 SRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGF-CPS 473

Query: 448 RKFDSYL 454
           R   S L
Sbjct: 474 RLIRSKL 480


>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
          Length = 975

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 140/325 (43%), Gaps = 51/325 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-----KNKV-KPNANTYNILGMQTL 222
           I+   +P  ++ N+++  LCK   +D A  + K +     K K+   N   + +  M  L
Sbjct: 432 IREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRL 491

Query: 223 EE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           EE       M  +G  P  FTYN+     C+ +    A DL   M+T G     P  K  
Sbjct: 492 EEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGH---PPWIKNC 548

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-------------- 321
             M+  L  + R+ E    L  M+  G LPD+ TY   + GMC  G              
Sbjct: 549 TEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISC 608

Query: 322 ---------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                                K++EA K +EEM  KG  P +VTYN  + V C     ++
Sbjct: 609 KYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEK 668

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+    +M+     P+V TY  LI  +   G PD A + W EM ++GCA +   Y   I+
Sbjct: 669 AISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFIN 728

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
           GL  C ++E A    EE+V KG +L
Sbjct: 729 GLRKCGRIETALTYFEEMVTKGFEL 753



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/435 (20%), Positives = 162/435 (37%), Gaps = 60/435 (13%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS---- 127
           L  L   LT  +   VL R     + A  FF WA  Q  + H   + N M  +L      
Sbjct: 62  LRRLAAELTAPAAESVLLRLP-SWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRA 120

Query: 128 --TKYKAKQFRLVCSM----LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALN 181
              +  A      C M    L ++ R        D  +        +      P     N
Sbjct: 121 HLDRLAADAISARCLMTPGALGFLLRCLGAAGLPDTAVRAFD--AARASFGCTPNSYTYN 178

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNILGM--------------QTLEEMI 226
            LLDAL K G  D A+   + +  +    + + Y +  +                 + M 
Sbjct: 179 CLLDALAKAGRADDAQARLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMS 238

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           ++G   D     T +  F K   V  A +L   M   G  +S    KT ++++    +  
Sbjct: 239 ELGWV-DEHVLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSE---KTLSVLVHGFTKQG 294

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+++   +   M++ G + D++ Y  ++EG+C    +  A K  +EM + G  PD+    
Sbjct: 295 RVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLK 354

Query: 347 CFLKVLCDNKNGDEALRLYGRMIE-----VGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             ++  C  + GD A  + G  I      +     V  YN+++      GE + A++   
Sbjct: 355 KVIEAFC--REGDFA--VIGPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLR 410

Query: 402 EM---------DKRGCAQ----------DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            M         D  G A           + D++ +++ GL    K++ A  L +++++ G
Sbjct: 411 SMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLG 470

Query: 443 LKLPYRKFDSYLMQL 457
            K     F+  + +L
Sbjct: 471 CKGKILMFNDLIHEL 485



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 7/177 (3%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM----GNKGYPPDIVTYNCFLKVLCDNKN 357
           GC P+  TY  +L+ +  AG+ ++A   L EM    G+     D  T    L+  C+   
Sbjct: 169 GCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSV--DKYTLTSLLRCYCNAGR 226

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D+A  ++ RM E+G W        L+  + + G+ DGA E    M+  G      T  V
Sbjct: 227 PDDANDVFQRMSELG-WVDEHVLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSV 285

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           ++ G     +V++A  +  ++V+ G  +    +   +  L    D+    KL   M+
Sbjct: 286 LVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMK 342


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 195/472 (41%), Gaps = 71/472 (15%)

Query: 67  NMEKALD----SLGVPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNL 120
           +ME  LD       + L+ + V  VL+  + +++  +A +FF WAG Q  Y H    Y  
Sbjct: 43  DMESRLDLFCNKFLIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVS 102

Query: 121 MIDILSST-----------KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
            ID+L+             K++   F +  S  + + ++      V+ LL + +   E  
Sbjct: 103 SIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKEN- 161

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217
               +P +   N LL+ L     ++ AE + + ++N K+ P+  TYN +           
Sbjct: 162 --GVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQ 219

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              +   +M     APD  TY T I              L+  M   G  I  P A  Y+
Sbjct: 220 KAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEI-PPHA--YS 276

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++I  L +  +  E +++   MI  GC  +V+ Y  +++     G + EA    E M  +
Sbjct: 277 LVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKE 336

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEAL---------------------------------- 362
           G  PD+VTY   +  +C +   DEA+                                  
Sbjct: 337 GLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEA 396

Query: 363 -RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            +L+  M++ GC P    YN LI    + G+ D A   +  M+  GC Q V TY +MI+G
Sbjct: 397 EKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMING 456

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           LF   K EEA  + + +++KG+      F +  + L + G +    KL D +
Sbjct: 457 LFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDEL 508



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 119/254 (46%), Gaps = 4/254 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G    E+MIQ G   +   Y   ID+  K   + EA  LFE M+ +G     P   TY +
Sbjct: 291 GYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGL---EPDVVTYGV 347

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  + ++ R++E    L     +G   +   Y  +++G+  AG+V EA K  EEM  KG
Sbjct: 348 VVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKG 407

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
            PPD   YN  +  L      DEAL  + RM + GC  +V TY ++I+  F   + + A 
Sbjct: 408 CPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEAL 467

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + W  M  +G       +  +  GL    KV  AC LL+E+   G+ +P   F+  L  L
Sbjct: 468 KMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGV-IPETAFEDMLNVL 526

Query: 458 SVIGDLGAIHKLSD 471
              G +    KL+D
Sbjct: 527 CKAGRIKEACKLAD 540



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 84/188 (44%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   +   M  +G  P + TY  +L G+  +  +E A + LE M N    PD+VTYN 
Sbjct: 148 VEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNT 207

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K  C      +A   +  M      P   TY  LI   +  G+ D     +HEMD+ G
Sbjct: 208 MIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENG 267

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
                  Y ++I GL    K  E   + E+++ KG K+    + + +   +  G++G   
Sbjct: 268 LEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAM 327

Query: 468 KLSDHMRK 475
            L + M+K
Sbjct: 328 LLFERMKK 335



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 50/246 (20%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P++    ++++ +CK G +D A    +  + N V  NA  Y+ L              +
Sbjct: 339 EPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEK 398

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM++ G  PD++ YN  ID   K     EA   F+ M  +G      T  TY IMI 
Sbjct: 399 LFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGC---DQTVYTYTIMIN 455

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV----------------- 323
            L +  + EE   +   MI+ G  P  + ++ +  G+CL+GKV                 
Sbjct: 456 GLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIP 515

Query: 324 -----------------EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                            +EA K  +   ++G           +  L    N D AL+L  
Sbjct: 516 ETAFEDMLNVLCKAGRIKEACKLADGFVDRGREIPGRVRTVLINALRKAGNADLALKLMH 575

Query: 367 RMIEVG 372
             I +G
Sbjct: 576 SKIGIG 581


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 33/333 (9%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTEKI 169
           YN +ID L   K     F L C M +     N V        F  V  L        E +
Sbjct: 192 YNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMV 251

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
                P +   N L+D LCK G +  A+++                      +  M++ G
Sbjct: 252 LKNVNPNVCTFNTLVDGLCKEGKMREAKSL----------------------VAVMMKEG 289

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD FTYN  +D +   +   +A ++F  M   G T       +Y++MI  L +   ++
Sbjct: 290 VGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCD---VHSYSVMISGLSKMKMLD 346

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   L   M N   +PDV  Y  +++G+C +G++  A K+++EM ++G PP+++TY   +
Sbjct: 347 EAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLI 406

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC +   D+A+ L  ++ + G   ++ TYN+L+    + G    A + + ++  +G  
Sbjct: 407 DALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHN 466

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            DV TY +MI+GL   S  +EA  LL ++ +KG
Sbjct: 467 VDVVTYSIMINGLCKESLFDEALTLLSKMEDKG 499



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 16/314 (5%)

Query: 179 ALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            LN+L+++ C    ++ A ++  K +K   +P+  TY  L             +   + +
Sbjct: 86  TLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRL 145

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G   D+ +Y T I+  CK   + +       +R     I  P    Y  +I  L ++
Sbjct: 146 VSQGIKLDHVSYGTLINGLCK---IGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKD 202

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             + + F L   M      P+V TY  ++ G C+ G++++A+  L EM  K   P++ T+
Sbjct: 203 KLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTF 262

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC      EA  L   M++ G  P V TYN L+  YF + E   A   ++ M +
Sbjct: 263 NTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQ 322

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G   DV +Y VMI GL     ++EA  L E + N+ +      + S +  L   G + +
Sbjct: 323 MGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINS 382

Query: 466 IHKLSDHMRKFYNP 479
             K  D M     P
Sbjct: 383 ALKYVDEMHDRGQP 396



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 123/275 (44%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G    A  + ++++ ++ +P+   YN +                  EM +  
Sbjct: 160 LINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKR 219

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY + I  FC    + +A  L   M  K     +P   T+  ++  L +  +M 
Sbjct: 220 VFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNV---NPNVCTFNTLVDGLCKEGKMR 276

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  SL+  M+  G  PDV TY  +++G  L  +  +A      M   G   D+ +Y+  +
Sbjct: 277 EAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMI 336

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             L   K  DEA+ L+  M      P V  Y+ LI    + G  + A +   EM  RG  
Sbjct: 337 SGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQP 396

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +V TY  +ID L    +V++A  LL+++ ++G++
Sbjct: 397 PNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQ 431



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 116/275 (42%), Gaps = 16/275 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--- 217
           +  +   ++++  P I     +L +L K         + +R++ + ++ N  T NIL   
Sbjct: 34  IDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINS 93

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                          +++++G+ PD  TY T I   C    V E+ +  + + ++G  + 
Sbjct: 94  YCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLD 153

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
             +   Y  +I  L +  +      LL  +    C PDV  Y  +++G+C    V +A+ 
Sbjct: 154 HVS---YGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFD 210

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              EM  K   P++VTY   +   C     D+A  L   M+     P+V T+N L+    
Sbjct: 211 LYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLC 270

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           + G+   A      M K G   DV TY  ++DG F
Sbjct: 271 KEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYF 305


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 190/434 (43%), Gaps = 35/434 (8%)

Query: 27  QSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG--VPLTTDSV 84
           QS + K   L  K+  + S    DV+ +Y+A+I    A   +EKAL  L     L  D  
Sbjct: 276 QSRVDKALQLFKKM--QKSGFAPDVS-VYDALIGGLCAKKEIEKALHLLSEMKELGIDPD 332

Query: 85  VGVLQR---FQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM 141
           + +L +   +  EE   +R         +     L YN +++ L + K   K + L+ +M
Sbjct: 333 IQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAM 392

Query: 142 LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK 201
                 +N     V+   M+        K   +P   + ++++D LC  G +D A ++ +
Sbjct: 393 TGDNYTDN---FEVNKFFMV--------KEMVRPXTTSFSIVIDGLCNTGKLDLALSLFR 441

Query: 202 R-VKNKVKPNANTYNILGMQT------------LEEMIQMGHAPDNFTYNTAIDTFCKAR 248
             V+   K N   YN L  +             L+EM   G  P  FT+N+     C+  
Sbjct: 442 DMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRRE 501

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            VT A D+   MR  G     P  K Y +++  L +  R  E  + L  M+  G LPD+ 
Sbjct: 502 DVTGALDMVREMRVHGH---EPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIV 558

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            Y   ++G      V++A +   ++  +GY PD+V YN  +   C  K   EA  +   M
Sbjct: 559 AYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEM 618

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  G  PSV TYN+LI  + + G+ D AF     M  +    +V TY  +IDGL +  + 
Sbjct: 619 VAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRP 678

Query: 429 EEACFLLEEVVNKG 442
           ++A  L  E+  KG
Sbjct: 679 DDAIHLWNEMRGKG 692



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 15/248 (6%)

Query: 199 ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
           +CKR     K +A   N L      EM++ G  PD   Y+ AID F K + V +A ++F 
Sbjct: 532 LCKR-----KRSAEACNFLA-----EMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFR 581

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            +  +G     P    Y  +I    +  R+ E   +L  M+  G +P V TY  +++G C
Sbjct: 582 DICARGYC---PDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWC 638

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             G +++A+  L  M  K   P+++TY   +  LC+    D+A+ L+  M   GC P+  
Sbjct: 639 KNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRI 698

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           ++  LI    + G PD A   + EM +R    D   Y  +I           A  +L+E+
Sbjct: 699 SFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALITSFISNKNPTLAFEILKEM 757

Query: 439 VNKGLKLP 446
           V KG K P
Sbjct: 758 VAKG-KFP 764



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 174/439 (39%), Gaps = 96/439 (21%)

Query: 66  DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL 125
           DN E  L + G  LT + V  VL   +   KIA+RFF WA  Q  + H    YN M   L
Sbjct: 82  DNQE--LRNFGSMLTHEVVENVLSGLK-SWKIAYRFFNWASDQGGFNHNCYTYNAMASCL 138

Query: 126 SSTKYKAKQFRLV-------CSM----LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
           S  +  A    L        C+M    L  + ++  +    D++ M LK+  +      +
Sbjct: 139 SHARQNAPLSLLSMDIVNSRCAMSPGALGAISKSGSI----DLVEMRLKEMCDS---GWE 191

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+   L  +L A C     D A ++   +  +   + +  +IL                 
Sbjct: 192 PDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSIL----------------- 234

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
                 + TF K   V +A +L E M   G  ++    KT+ ++I   V+  R+++   L
Sbjct: 235 ------VLTFSKCGEVDKAFELIERMEDLGIRLNE---KTFCVLIHGFVRQSRVDKALQL 285

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI------------ 342
              M  SG  PDVS Y  ++ G+C   ++E+A   L EM   G  PDI            
Sbjct: 286 FKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSE 345

Query: 343 ---------------------VTYNCFLKVLCDNKNGDEALRLYGRM--------IEVGC 373
                                + YN  L  L + K+ D+A  L   M         EV  
Sbjct: 346 EVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNK 405

Query: 374 W--------PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           +        P   +++++I      G+ D A   + +M + GC Q+V  Y  +ID L + 
Sbjct: 406 FFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNS 465

Query: 426 SKVEEACFLLEEVVNKGLK 444
           +++EE   LL+E+   G +
Sbjct: 466 NRLEECYLLLKEMKGSGFR 484



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           ++EM++    P   +++  ID  C    +  A  LF  M   G          Y  +I  
Sbjct: 409 VKEMVR----PXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGC---KQNVLLYNNLIDK 461

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  ++R+EEC+ LL  M  SG  P   T+  +   +C    V  A   + EM   G+ P 
Sbjct: 462 LSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPW 521

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I  Y   +K LC  K   EA      M+  G  P +  Y+  I  + ++   D A E + 
Sbjct: 522 IKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFR 581

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++  RG   DV  Y  +I+G     +V EA  +L+E+V KGL
Sbjct: 582 DICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 623



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 49/253 (19%)

Query: 162 LKQYTEKIK--VKTQPEINALNLLLDALCKCGLVD---YAETICKRVKNKVKPNANTYNI 216
           +K YT  +K   K +    A N L + + +  L D   Y+  I   VK K    A     
Sbjct: 522 IKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQA----- 576

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             ++   ++   G+ PD   YNT I+ FCK + V+EA D+ + M  KG     P+  TY 
Sbjct: 577 --LEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLV---PSVVTYN 631

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++I    +N  +++ F  L  M+     P+V TY  +++G+C AG+ ++A     EM  K
Sbjct: 632 LLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGK 691

Query: 337 G-------------------YP---------------PDIVTYNCFLKVLCDNKNGDEAL 362
           G                   +P               PD + Y   +     NKN   A 
Sbjct: 692 GCSPNRISFIALIHGLCKCGWPDAALLYFREMGERETPDTIVYVALITSFISNKNPTLAF 751

Query: 363 RLYGRMIEVGCWP 375
            +   M+  G +P
Sbjct: 752 EILKEMVAKGKFP 764



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 8/210 (3%)

Query: 274 TYAIMIVALVQNDRMEECFSLLG-HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           TY  M  + + + R     SLL   ++NS C    +     L  +  +G ++     L+E
Sbjct: 130 TYNAM-ASCLSHARQNAPLSLLSMDIVNSRC----AMSPGALGAISKSGSIDLVEMRLKE 184

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M + G+ PD  T    L+  C+++  D+AL ++  +   G W      ++L+  + + GE
Sbjct: 185 MCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRG-WVDGHVLSILVLTFSKCGE 243

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D AFE    M+  G   +  T+CV+I G    S+V++A  L +++   G       +D+
Sbjct: 244 VDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDA 303

Query: 453 YLMQLSVIGDL-GAIHKLSDHMRKFYNPVI 481
            +  L    ++  A+H LS+      +P I
Sbjct: 304 LIGGLCAKKEIEKALHLLSEMKELGIDPDI 333


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 187/467 (40%), Gaps = 69/467 (14%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK--AKQ 134
           +P    S +  L     + + A  FF W G +  + H   ++  M++IL    Y   A+ 
Sbjct: 72  IPSIAPSHISALFALNLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAEN 131

Query: 135 FRL--------------VCSMLDYMKRNNKVFV------PVDVLLMILKQ---------- 164
            R+              V  ML  M R    F         ++LLM+L +          
Sbjct: 132 MRILMIKSTDSSENALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSV 191

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           Y E +     P I  LN +++  CK G V  AE    ++                     
Sbjct: 192 YLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKI--------------------- 230

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
            +Q G + D FTY + I  +C+ + V  A  +F  M  KG         +Y  +I    +
Sbjct: 231 -VQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCL---RNEVSYTNLIHGFCE 286

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R++E   L   M    C P V TY  ++  +C  G+  EA    +EM  K   P++ T
Sbjct: 287 ARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHT 346

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +  LC++ N D+A ++   M+E G  PSV TYN LI  Y + G    A E    M+
Sbjct: 347 YTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLME 406

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
              C+ +  TY  +I G      + +A  LL +++ + L+     ++  +      GDLG
Sbjct: 407 SNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLG 466

Query: 465 AIHKLSDHMRK------------FYNPVIARRLALNQKRVRISLREK 499
           + +KL   M +            F + +  R L    + +  SL+EK
Sbjct: 467 SAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEK 513



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 136/297 (45%), Gaps = 18/297 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK +++  +    P +    +++ ALC+ G    A  + K +  K  +PN +TY +L   
Sbjct: 294 LKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICS 353

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + L  M++ G  P   TYN  ID +CK  +   A ++   M +      
Sbjct: 354 LCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNC--- 410

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP A+TY  +I+   +   + +  SLL  M+     P+V TY  ++ G C  G +  AYK
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYK 470

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  M   G  PD  TY+ F+  LC     +EA  L+  + E G   +   Y+ LI  Y 
Sbjct: 471 LLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYC 530

Query: 389 ELGE-PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           ++G+  DG F    +M   GC  +  TY  +IDG       +EA  L++ ++ + ++
Sbjct: 531 KVGKVSDGRF-LLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIE 586



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 136/310 (43%), Gaps = 45/310 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    ++ +D LCK GLV+ A ++ + +K K +K N   Y+ L            G   
Sbjct: 482 PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFL 541

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++M+  G  P++ TYN+ ID +CK +   EA  L + M  +      P A TY I+I  
Sbjct: 542 LDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDI---EPAADTYTILIDN 598

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L+++D  ++   +   M+++G  PDV  Y   +   C  G++++A   + +M  KG  PD
Sbjct: 599 LLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPD 658

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---------------- 385
            + Y  F+       + D A  +  RM EVGC PS  TY+ LI                 
Sbjct: 659 TMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSEL 718

Query: 386 MYFELGEPDGAFET-WHEMD------------KRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
                G     F   W  +D            + GCA + +TY   I GL     +E A 
Sbjct: 719 SDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAH 778

Query: 433 FLLEEVVNKG 442
            L + +  KG
Sbjct: 779 RLFDHMKEKG 788



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 136/314 (43%), Gaps = 20/314 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN--ILG----------MQT 221
           P +   N L+D  CK GL   A E +     N   PNA TYN  ILG          M  
Sbjct: 377 PSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSL 436

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M++    P+  TYN  I   CK   +  A  L   M   G     P   TY++ I  
Sbjct: 437 LHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLV---PDEWTYSVFIDT 493

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   +EE  SL   +   G   +   Y  +++G C  GKV +    L++M + G  P+
Sbjct: 494 LCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPN 553

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +TYN  +   C  KN  EA  L   MI+    P+  TY +LI    +  E D A + + 
Sbjct: 554 SITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFD 613

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKF-DSYLMQL 457
           +M   G   DV  Y   I       ++++A  L+ ++  KG+    + Y  F D+Y    
Sbjct: 614 QMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFG 673

Query: 458 SVIGDLGAIHKLSD 471
           S+ G  G + ++ +
Sbjct: 674 SIDGAFGILKRMHE 687



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 16/298 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQ 220
            P     N L+   C+   +  A ++  K ++ K++PN  TYNIL              +
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYK 470

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  M + G  PD +TY+  IDT CK  +V EA  LFE ++ KG   +      Y+ +I 
Sbjct: 471 LLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVI---YSTLID 527

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++ +   LL  M+++GC+P+  TY  +++G C     +EA   ++ M  +   P
Sbjct: 528 GYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEP 587

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
              TY   +  L  +   D+A  ++ +M+  G  P V  Y   I  Y   G    A    
Sbjct: 588 AADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLI 647

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +M+ +G   D   Y + ID       ++ A  +L+ +   G +  Y  +   +  LS
Sbjct: 648 CKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLS 705



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 113/323 (34%), Gaps = 74/323 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P     N L+D  CK      A  +    +K  ++P A+TY IL                
Sbjct: 552 PNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDM 611

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG----------------- 264
            ++M+  G  PD F Y   I  +C    + +A  L   M  KG                 
Sbjct: 612 FDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGR 671

Query: 265 -STISS--------------PTAKTYAIMIVAL--------------------VQNDRME 289
             +I                P+  TY+ +I  L                    V ++   
Sbjct: 672 FGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFS 731

Query: 290 ECF---------SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            C+          L G M   GC P+ +TY + + G+C  G +E A++  + M  KG  P
Sbjct: 732 NCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSP 791

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +   YN  L   C      EA+R    MIE    P + +  +L+   ++ G  + A   +
Sbjct: 792 NEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVF 851

Query: 401 HEMDKRGCAQDVDTYCVMIDGLF 423
               +     D   + V+IDGL 
Sbjct: 852 CSFLQCEYNYDEMVWKVLIDGLL 874



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 110/302 (36%), Gaps = 46/302 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------ 217
           + + +   + P++      + A C  G +  AE  ICK     + P+   Y +       
Sbjct: 612 FDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGR 671

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTF--------------------------- 244
                     L+ M ++G  P  +TY+  I                              
Sbjct: 672 FGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFS 731

Query: 245 -CKARMVTE-AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            C  R+  E   DLF  M   G    +P A TY   I  L +   +E    L  HM   G
Sbjct: 732 NCWRRVDYEFTLDLFGKMAEHGC---APNANTYGKFITGLCKVGCLEVAHRLFDHMKEKG 788

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P+   Y  +L   C  G   EA ++L+ M    + P + +    L  L D  N ++A 
Sbjct: 789 QSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAK 848

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           R++   ++         + +LI    + G  D   + +  M+ +GC     TY ++I+G 
Sbjct: 849 RVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEG- 907

Query: 423 FD 424
           FD
Sbjct: 908 FD 909


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E   +   P+I   N+L+D  CK G V  A  + K +    V+PN  TY+ L        
Sbjct: 293 EMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWT 352

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +    MI  G  P+ F+YN  I+ +CKA+ + EA  LF  M  +G T   P   
Sbjct: 353 DVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLT---PNNV 409

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I    Q  ++ E   L  +M  +G LPD+ TY  +L+G C  G + +A++    M
Sbjct: 410 SYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAM 469

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    P++V Y   +  +C + N  +A +L+  +   G  P VQ Y  +I+   + G  
Sbjct: 470 QSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLL 529

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A E +  M+  GC  D  +Y V+I GL        A  L+ E+ ++G 
Sbjct: 530 DEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGF 579



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 19/331 (5%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTY 214
           DV++ + KQ      V   P I  L++ ++  C+   VD     + K +K  ++P   T+
Sbjct: 110 DVVISLSKQME---LVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTF 166

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
             L             ++  ++M+  G  PD +TYNT I+  CK      AA L + M  
Sbjct: 167 TTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEE 226

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P   TY+ +I +L ++  + E   +  +M   G  PD+ TY  +++G+C   +
Sbjct: 227 AGC---QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR 283

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            +EA   L EM +    PDIVT+N  +   C      EAL +   M E+G  P+V TY+ 
Sbjct: 284 WKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSS 343

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+  Y    +   A + +H M  +GC  ++ +Y ++I+G     +++EA  L  E++++G
Sbjct: 344 LMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG 403

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           L      +++ +     +G L     L  +M
Sbjct: 404 LTPNNVSYNTLIHGFCQLGKLREAQDLFRNM 434



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 128/284 (45%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           QP +   + L+D+LC+  LV+ A  I   +K K + P+  TY  L               
Sbjct: 230 QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASA 289

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM  +   PD  T+N  +DTFCK   V+EA  + + M   G     P   TY+ ++ 
Sbjct: 290 LLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGV---EPNVVTYSSLMY 346

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  + E   L   MI  GC P++ +Y  ++ G C A +++EA +   EM ++G  P
Sbjct: 347 GYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTP 406

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + V+YN  +   C      EA  L+  M   G  P + TY++L+  + + G    AF  +
Sbjct: 407 NNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLF 466

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             M       ++  Y +++  +      ++A  L  E+  +GL+
Sbjct: 467 RAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQ 510


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 136/276 (49%), Gaps = 18/276 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN--TYNIL--------GMQTLEE 224
           P +   N+L+  LC  G V  AE    RV   + P+A   TYN +         +     
Sbjct: 94  PAVIPCNILIKKLCADGRVADAE----RVVEALGPSATIITYNTMVNGYCRAGNIDAARR 149

Query: 225 MI-QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           MI  +  APD FTYN  I   C    V +A  +F+ M  +G    SP+  TY+I++ A  
Sbjct: 150 MIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGC---SPSVVTYSILLDATC 206

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +    ++   LL  M + GC PD+ TY  ++  MC  G V EA K L  + + G  PD V
Sbjct: 207 KESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAV 266

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   LK LC ++  +EA +L  +M    C P   T+N +I+   + G    A +   +M
Sbjct: 267 TYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQM 326

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            + GC  D+ TY  ++DGL    +V+EA  LL+E++
Sbjct: 327 SEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELL 362



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 137/306 (44%), Gaps = 21/306 (6%)

Query: 171 VKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------ 217
           V   P+    N L+ ALC  G V D        +     P+  TY+IL            
Sbjct: 154 VPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQ 213

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L+EM   G  PD  TYN  I+  C    V EA  +   + + G     P A TY  
Sbjct: 214 AVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGC---KPDAVTYTP 270

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ +L  ++R EE   LL  M ++ C PD  T+  V+  +C  G V  A K L +M   G
Sbjct: 271 VLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHG 330

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLY----GRMIEVGCWPSVQTYNMLISMYFELGEP 393
             PDI+TY+  +  LC  +  DEA++L       M+   C P   T+N +I+   + G  
Sbjct: 331 CTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLF 390

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDG-LFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
           D A +   EM + GC  D+ TY  ++DG L    K EEA  LL  +V+ GL      + S
Sbjct: 391 DRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKS 450

Query: 453 YLMQLS 458
               LS
Sbjct: 451 LAFGLS 456



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 145/330 (43%), Gaps = 32/330 (9%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-FVPVDVLLMILKQYTEKIKVKTQ 174
           + YN++I+ + S     +  +++ S+  Y  + + V + PV   L   +++ E  K+ T+
Sbjct: 231 VTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTK 290

Query: 175 -------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQ 227
                  P+    N ++ +LC+ G V  A  +                      L +M +
Sbjct: 291 MFSNDCAPDEVTFNAVITSLCQKGFVGRATKV----------------------LAQMSE 328

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQND 286
            G  PD  TY++ +D  CK R V EA  L  E +    S    P   T+  +I +L Q  
Sbjct: 329 HGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKG 388

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEG-MCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             +    ++  M   GC+PD++TY  +++G +C + K EEA   L  M + G  PD  TY
Sbjct: 389 LFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTY 448

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
                 L      + A+ ++ R+  +G  P    YN ++    +    D A + +  M  
Sbjct: 449 KSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVS 508

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            GC  D  TY ++++G+     +EEA  LL
Sbjct: 509 NGCMPDESTYIILVEGIAYEGFLEEAKELL 538



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 9/247 (3%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P     N  I   C    V +A  + E +    + I      TY  M+    +   +
Sbjct: 91  GKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATII------TYNTMVNGYCRAGNI 144

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +    ++  +  +   PD  TY  ++  +C+ G V +A    ++M ++G  P +VTY+  
Sbjct: 145 DAARRMIDSVPFA---PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSIL 201

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L   C      +A+ L   M   GC P + TYN+LI+     G+   A +  + +   GC
Sbjct: 202 LDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGC 261

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D  TY  ++  L    + EEA  LL ++ +         F++ +  L   G +G   K
Sbjct: 262 KPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATK 321

Query: 469 LSDHMRK 475
           +   M +
Sbjct: 322 VLAQMSE 328



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 14/209 (6%)

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            LVQ   ++    L+  +  SG  P V     +++ +C  G+V +A + +E +G      
Sbjct: 70  GLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSAT-- 127

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            I+TYN  +   C   N D A R+   +  V   P   TYN LI      G    A   +
Sbjct: 128 -IITYNTMVNGYCRAGNIDAARRM---IDSVPFAPDTFTYNPLIRALCVRGCVLDALAVF 183

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +M  RGC+  V TY +++D     S  ++A  LL+E+ +KG +     ++  +  +   
Sbjct: 184 DDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQ 243

Query: 461 GDLGAIHKLSDHMRKF--------YNPVI 481
           GD+G   K+ + +  +        Y PV+
Sbjct: 244 GDVGEALKVLNSLPSYGCKPDAVTYTPVL 272


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 148/302 (49%), Gaps = 19/302 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP I   N L+  LC  G + +      K +    +PN  TY  L          
Sbjct: 121 LKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGST 180

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M Q    PD   Y + ID+ CK R VT+A +LF  M  +G    SP+  TY
Sbjct: 181 SAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGI---SPSIFTY 237

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I AL      +   +LL  M+NS  +P+V  +  V++ +C  GKV EA+  ++ M  
Sbjct: 238 NSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIK 297

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P++VTYN  +   C     DEA++++  M+  G  P V +Y+ LI+ Y ++   + 
Sbjct: 298 RGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEK 357

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A   + EM ++    +  TY  ++ GL    ++++A  L  E+V +G ++P   F SY +
Sbjct: 358 AMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG-QIP--DFVSYCI 414

Query: 456 QL 457
            L
Sbjct: 415 LL 416



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 190/462 (41%), Gaps = 76/462 (16%)

Query: 47  SVSDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMW 104
           S++D  KL  +I  + + +   ++   +DS G+P    ++  ++  F   +++ F F + 
Sbjct: 58  SIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVL 117

Query: 105 A-----GHQDNYA-----------------------------HEP--LAYNLMIDILSST 128
           A     GHQ N A                              +P  + Y  +I+ L   
Sbjct: 118 AKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKV 177

Query: 129 KYKAKQFRLVCSM---------------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173
              +   RL+ SM               +D + ++ +V    ++       ++E I    
Sbjct: 178 GSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNL-------FSEMIHQGI 230

Query: 174 QPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
            P I   N L+ ALC  C        + + V +K+ PN   ++ +               
Sbjct: 231 SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD 290

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            ++ MI+ G  P+  TYN  +D  C    + EA  +F+ M  KG    +P   +Y+ +I 
Sbjct: 291 VVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF---APDVVSYSTLIN 347

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  R+E+   L   M     +P+  TY  ++ G+C  G++++A     EM  +G  P
Sbjct: 348 GYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIP 407

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D V+Y   L  LC N+  DEA+ L   +      P +Q Y ++I      GE + A + +
Sbjct: 408 DFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLF 467

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +  +G   +V TY +MI+GL     + EA  L  E+  KG
Sbjct: 468 SNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 509



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 134/303 (44%), Gaps = 45/303 (14%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           E +  K  P +   + ++DALCK G V  A  +    +K  V+PN  TYN L        
Sbjct: 259 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 318

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M+  G APD  +Y+T I+ +CK + + +A  LFE M  K    ++ T  
Sbjct: 319 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 378

Query: 274 T--------------------------------YAIMIVALVQNDRMEECFSLLGHMINS 301
           T                                Y I++  L +N R++E  +LL  +  S
Sbjct: 379 TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGS 438

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
              PD+  Y  V++GMC AG++E A      + +KG  P++ TY   +  LC      EA
Sbjct: 439 NMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEA 498

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            +L+G M   G  P+  TYN++   +    E     +   EM  RG + DV T  V+++ 
Sbjct: 499 SKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEM 558

Query: 422 LFD 424
           L D
Sbjct: 559 LSD 561



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 112/258 (43%), Gaps = 3/258 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + +   M+ M   P    +   + +  K +  +    L   M + G     P   T  I
Sbjct: 43  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGI---PPNIYTLNI 99

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +     R+   FS+L  ++  G  P+++T+  ++ G+C+ GK+ E     ++M  +G
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P++VTY   +  LC   +   A+RL   M +  C P V  Y  +I    +  +   AF
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 219

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + EM  +G +  + TY  +I  L +  + +    LL E+VN  +      F + +  L
Sbjct: 220 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL 279

Query: 458 SVIGDLGAIHKLSDHMRK 475
              G +   H + D M K
Sbjct: 280 CKEGKVMEAHDVVDMMIK 297



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 22/233 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL------------G 218
           P++ + + L++  CK   ++ A    E +C++   ++ PN  TY+ L             
Sbjct: 337 PDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK---ELIPNTVTYSTLMHGLCHVGRLQDA 393

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +    EM+  G  PD  +Y   +D  CK R + EA  L + +  +GS +  P  + Y I+
Sbjct: 394 IALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI--EGSNMD-PDIQIYTIV 450

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  + +   +E    L  ++ + G  P+V TY  ++ G+C  G + EA K   EM  KGY
Sbjct: 451 IDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY 510

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            P+  TYN   +    N      ++L   M+  G    V T  +L+ M  + G
Sbjct: 511 SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG 563



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 32/205 (15%)

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
           T+ +   F   C +LDY+ +N ++    D  + +LK           P+I    +++D +
Sbjct: 402 TRGQIPDFVSYCILLDYLCKNRRL----DEAIALLKAIEGS---NMDPDIQIYTIVIDGM 454

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
           C+ G ++ A  +   + +K                      G  P+ +TY   I+  C+ 
Sbjct: 455 CRAGELEAARDLFSNLSSK----------------------GLHPNVWTYTIMINGLCQQ 492

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
            ++ EA+ LF  M+ KG    SP   TY ++    ++N+       LL  M+  G   DV
Sbjct: 493 GLLAEASKLFGEMKRKGY---SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADV 549

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEE 332
           ST   ++E +   G  +   + L E
Sbjct: 550 STSTVLVEMLSDDGLDQSVKQILSE 574



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 35/207 (16%)

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--- 342
           + +++  S    M++    P ++ + ++L  +              +M + G PP+I   
Sbjct: 38  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 97

Query: 343 --------------------------------VTYNCFLKVLCDNKNGDEALRLYGRMIE 370
                                            T+N  ++ LC      E L L+ +MI 
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 157

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI+   ++G    A      M++  C  DV  Y  +ID L    +V +
Sbjct: 158 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           A  L  E++++G+      ++S +  L
Sbjct: 218 AFNLFSEMIHQGISPSIFTYNSLIHAL 244



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 66/153 (43%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A      M +   PP I  +   L  +   K+    L L  +M   G  P++ T N+
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 99

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ +  L     AF    ++ K G   ++ T+  +I GL    K+ E   L ++++ +G
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +     + + +  L  +G   A  +L   M +
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ 192


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 174/419 (41%), Gaps = 69/419 (16%)

Query: 37  VCKVFDESSDSVSDVAKLYEAIIDNSNA---YDNMEKALDSL---GVPLTTDSVV---GV 87
           +C      +    D A+ +EA +    A    D ++ AL  +   GVP T  ++V   G 
Sbjct: 40  LCGAGPPPAPGTGDAARAHEAAVRRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGA 99

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAH--EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
             R    ++ A + F  A H    A   EP  YN +ID L                    
Sbjct: 100 FARAGAPDR-ALKTFYRAVHDLGCARPTEPRLYNHLIDAL-------------------- 138

Query: 146 KRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN 205
            R N V   V V       Y    K    P +   NLL+ ALC+   V  A         
Sbjct: 139 LRENMVGAVVLV-------YDNMRKDGVHPNVFTYNLLVRALCQNNRVGAAR-------- 183

Query: 206 KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         + L+EM + G  PD+ TY T +   CK   + EA ++   M     
Sbjct: 184 --------------KMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAM----- 224

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P A +Y  +++AL +  RM+E FS++  M+  G  P+V TY  +++  C AG++  
Sbjct: 225 ---PPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRM 281

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A   L  M   G  P++VT+   ++ L D+    +AL ++  M+  G  PS  +YN+LI 
Sbjct: 282 ACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIR 341

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               +G+  GA    + M++ GC  +V TY  +IDG      +  A  +  ++   G K
Sbjct: 342 GLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCK 400



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 118/284 (41%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           QP +     ++DA CK G +  A  I  R V     PN  T+  L             + 
Sbjct: 260 QPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALD 319

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+  G AP   +YN  I   C    +  A+ +   M   G     P  +TY+ +I 
Sbjct: 320 MWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCF---PNVRTYSTLID 376

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +    S+   M  SGC P+V  Y  +++  C      +A   +++M  +  PP
Sbjct: 377 GFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPP 436

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VT+N  ++ LCD +    AL ++  M   GC P+ +TYN LI   F  G    A    
Sbjct: 437 NTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMV 496

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            EM   G    + TY  ++ GL       EA   + +++ +G++
Sbjct: 497 TEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ 540



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%)

Query: 215 NILGMQTL--EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           N++G   L  + M + G  P+ FTYN  +   C+   V  A  + + M  KG     P  
Sbjct: 142 NMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGC---PPDD 198

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TYA ++  L + DR++E   +L  M      P  ++Y  ++  +C   +++E +  + +
Sbjct: 199 VTYATIVSVLCKLDRLDEATEVLAAMP-----PVAASYNAIVLALCREFRMQEVFSVVSD 253

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +G  P+++TY   +   C       A  +  RM+  GC P+V T+  L+   F+ G 
Sbjct: 254 MVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGR 313

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
              A + W  M   G A    +Y ++I GL     ++ A  +L  +   G     R + +
Sbjct: 314 VHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYST 373

Query: 453 YLMQLSVIGDL-GAIHKLSDHMRKFYNP----------VIARRLALNQKRVRI 494
            +   S  GDL GAI   +D  R    P          V  ++L  NQ +  I
Sbjct: 374 LIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLI 426



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P   + N+L+  LC  G +  A +I   + ++   PN  TY+ L             +  
Sbjct: 331 PSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISI 390

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +M + G  P+   Y   +D FCK  M  +A  L + M  +      P   T+  +I +
Sbjct: 391 WNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENC---PPNTVTFNTLIRS 447

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R+     +   M   GC+P+  TY E++ G+   G   +A   + EM + G    
Sbjct: 448 LCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELS 507

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +  LC  +   EA+   G+MI  G  P+  T++ +I  Y + GE   A     
Sbjct: 508 LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLG 567

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M+   C +++  Y +++  L +  K+ +A   L +++ +G+
Sbjct: 568 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGI 609



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 120/306 (39%), Gaps = 32/306 (10%)

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVD 156
           + +A   ++YN++I  L S        +   S+L+ M+++               F    
Sbjct: 327 EGWAPSTVSYNILIRGLCSVG----DLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 382

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYN 215
            L   +  + +  +   +P +     ++D  CK  + + A++ I K +     PN  T+N
Sbjct: 383 DLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFN 442

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +    EM + G  P+  TYN  I    +     +A  +   M++ 
Sbjct: 443 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSH 502

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G  +S     TY  ++  L Q     E    +G MI  G  P+  T+  ++   C  G+V
Sbjct: 503 GIELS---LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEV 559

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
             A   L  M       +I+ Y   +  LC+     +A+    +M+  G +P+  T+N+L
Sbjct: 560 RMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 619

Query: 384 ISMYFE 389
           +   F 
Sbjct: 620 VRGVFR 625


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 148/302 (49%), Gaps = 19/302 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP I   N L+  LC  G + +      K +    +PN  TY  L          
Sbjct: 130 LKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGST 189

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M Q    PD   Y + ID+ CK R VT+A +LF  M  +G    SP+  TY
Sbjct: 190 SAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGI---SPSIFTY 246

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I AL      +   +LL  M+NS  +P+V  +  V++ +C  GKV EA+  ++ M  
Sbjct: 247 NSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIK 306

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P++VTYN  +   C     DEA++++  M+  G  P V +Y+ LI+ Y ++   + 
Sbjct: 307 RGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEK 366

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A   + EM ++    +  TY  ++ GL    ++++A  L  E+V +G ++P   F SY +
Sbjct: 367 AMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG-QIP--DFVSYCI 423

Query: 456 QL 457
            L
Sbjct: 424 LL 425



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 190/462 (41%), Gaps = 76/462 (16%)

Query: 47  SVSDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMW 104
           S++D  KL  +I  + + +   ++   +DS G+P    ++  ++  F   +++ F F + 
Sbjct: 67  SIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVL 126

Query: 105 A-----GHQDNYA-----------------------------HEP--LAYNLMIDILSST 128
           A     GHQ N A                              +P  + Y  +I+ L   
Sbjct: 127 AKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKV 186

Query: 129 KYKAKQFRLVCSM---------------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173
              +   RL+ SM               +D + ++ +V    ++       ++E I    
Sbjct: 187 GSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNL-------FSEMIHQGI 239

Query: 174 QPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
            P I   N L+ ALC  C        + + V +K+ PN   ++ +               
Sbjct: 240 SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD 299

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            ++ MI+ G  P+  TYN  +D  C    + EA  +F+ M  KG    +P   +Y+ +I 
Sbjct: 300 VVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF---APDVVSYSTLIN 356

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  R+E+   L   M     +P+  TY  ++ G+C  G++++A     EM  +G  P
Sbjct: 357 GYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIP 416

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D V+Y   L  LC N+  DEA+ L   +      P +Q Y ++I      GE + A + +
Sbjct: 417 DFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLF 476

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +  +G   +V TY +MI+GL     + EA  L  E+  KG
Sbjct: 477 SNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 518



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 134/303 (44%), Gaps = 45/303 (14%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           E +  K  P +   + ++DALCK G V  A  +    +K  V+PN  TYN L        
Sbjct: 268 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 327

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M+  G APD  +Y+T I+ +CK + + +A  LFE M  K    ++ T  
Sbjct: 328 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 387

Query: 274 T--------------------------------YAIMIVALVQNDRMEECFSLLGHMINS 301
           T                                Y I++  L +N R++E  +LL  +  S
Sbjct: 388 TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGS 447

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
              PD+  Y  V++GMC AG++E A      + +KG  P++ TY   +  LC      EA
Sbjct: 448 NMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEA 507

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            +L+G M   G  P+  TYN++   +    E     +   EM  RG + DV T  V+++ 
Sbjct: 508 SKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEM 567

Query: 422 LFD 424
           L D
Sbjct: 568 LSD 570



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 112/258 (43%), Gaps = 3/258 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            + +   M+ M   P    +   + +  K +  +    L   M + G     P   T  I
Sbjct: 52  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGI---PPNIYTLNI 108

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +     R+   FS+L  ++  G  P+++T+  ++ G+C+ GK+ E     ++M  +G
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P++VTY   +  LC   +   A+RL   M +  C P V  Y  +I    +  +   AF
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 228

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             + EM  +G +  + TY  +I  L +  + +    LL E+VN  +      F + +  L
Sbjct: 229 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL 288

Query: 458 SVIGDLGAIHKLSDHMRK 475
              G +   H + D M K
Sbjct: 289 CKEGKVMEAHDVVDMMIK 306



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 22/233 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL------------G 218
           P++ + + L++  CK   ++ A    E +C++   ++ PN  TY+ L             
Sbjct: 346 PDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK---ELIPNTVTYSTLMHGLCHVGRLQDA 402

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +    EM+  G  PD  +Y   +D  CK R + EA  L + +  +GS +  P  + Y I+
Sbjct: 403 IALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI--EGSNMD-PDIQIYTIV 459

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  + +   +E    L  ++ + G  P+V TY  ++ G+C  G + EA K   EM  KGY
Sbjct: 460 IDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY 519

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            P+  TYN   +    N      ++L   M+  G    V T  +L+ M  + G
Sbjct: 520 SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG 572



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 32/205 (15%)

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
           T+ +   F   C +LDY+ +N ++    D  + +LK           P+I    +++D +
Sbjct: 411 TRGQIPDFVSYCILLDYLCKNRRL----DEAIALLKAIEGS---NMDPDIQIYTIVIDGM 463

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
           C+ G ++ A  +   + +K                      G  P+ +TY   I+  C+ 
Sbjct: 464 CRAGELEAARDLFSNLSSK----------------------GLHPNVWTYTIMINGLCQQ 501

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
            ++ EA+ LF  M+ KG    SP   TY ++    ++N+       LL  M+  G   DV
Sbjct: 502 GLLAEASKLFGEMKRKGY---SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADV 558

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEE 332
           ST   ++E +   G  +   + L E
Sbjct: 559 STSTVLVEMLSDDGLDQSVKQILSE 583



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 35/207 (16%)

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--- 342
           + +++  S    M++    P ++ + ++L  +              +M + G PP+I   
Sbjct: 47  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 106

Query: 343 --------------------------------VTYNCFLKVLCDNKNGDEALRLYGRMIE 370
                                            T+N  ++ LC      E L L+ +MI 
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 166

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI+   ++G    A      M++  C  DV  Y  +ID L    +V +
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           A  L  E++++G+      ++S +  L
Sbjct: 227 AFNLFSEMIHQGISPSIFTYNSLIHAL 253



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 66/153 (43%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A      M +   PP I  +   L  +   K+    L L  +M   G  P++ T N+
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ +  L     AF    ++ K G   ++ T+  +I GL    K+ E   L ++++ +G
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +     + + +  L  +G   A  +L   M +
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ 201


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 198/448 (44%), Gaps = 51/448 (11%)

Query: 81  TDSVVG-VLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVC 139
           T  V G VLQ+ + +  +A+ FF WAG++  + H      ++++     K   +  RL+ 
Sbjct: 42  TPEVAGRVLQQVE-DPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLK 100

Query: 140 SMLDYMKRNNKVFVP-----------VDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
             L+ +   N++              VD    +L +  E+     + ++   + L+  LC
Sbjct: 101 EELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKER---GVKMDVLLHSTLIQGLC 157

Query: 189 KCGLVDYAETICKRVKNKVKPNANTYN-----ILGMQTLEEMIQM------------GHA 231
           + G +D A    K +  +  PN  TYN     +     ++E +++            G  
Sbjct: 158 RKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCE 217

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  +Y+T ID  CKA+ V +A + F+ MR  G    +P   TY+ +I  L + DR  EC
Sbjct: 218 PDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGC---APNVVTYSSLIDGLCKVDRPSEC 274

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             LL HM   G   ++  +  +L  +    + E+A +F E +   G  P++VTYN  +  
Sbjct: 275 LELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHG 334

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC     DEA R+   M+E    P V TY+ +I  + + G  D A + +  M    C   
Sbjct: 335 LCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPH 394

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-----SVIGDLGAI 466
             T+  ++ G  +  K  EA  + E++VN G  +P  +  + LM       SV   L   
Sbjct: 395 PVTFMTLLHGFSEHKKSREAFRVHEDMVNAGF-IPGLQTYNVLMDCVCGADSVESALEIY 453

Query: 467 HKLSDHMRK----FYNPVI-----ARRL 485
           HK+    R+     Y P+I     ARR+
Sbjct: 454 HKMKRKKRQPDCNTYAPLIQCLCRARRV 481



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 10/276 (3%)

Query: 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
           LC+  L  YA T+   V  +V       ++          + G   + +T    ++ F K
Sbjct: 30  LCR-DLAGYASTVTPEVAGRVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVK 88

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           A+   EA  L   ++ +   +  P    Y  +I    +  ++++ F LL  M   G   D
Sbjct: 89  AKRHEEAHRL---LKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMD 145

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  +  +++G+C  G+++EA +  + MG +   P+++TYN  +  LC     DEAL L+ 
Sbjct: 146 VLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVVNGLCKANRIDEALELFD 204

Query: 367 RM-----IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            M        GC P V +Y+ +I    +    D A+E +  M   GCA +V TY  +IDG
Sbjct: 205 DMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDG 264

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           L    +  E   LL  +  KG  +    F++ L  L
Sbjct: 265 LCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHAL 300



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 26/273 (9%)

Query: 164 QYTEKI-KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           Q+ E++ K   +P +   N+ +  LCK G VD A  I                      L
Sbjct: 311 QFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRI----------------------L 348

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM++    PD  TY++ ID FCKA  + +A D+F  M         P   T+  ++   
Sbjct: 349 LEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECI---PHPVTFMTLLHGF 405

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++ +  E F +   M+N+G +P + TY  +++ +C A  VE A +   +M  K   PD 
Sbjct: 406 SEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDC 465

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            TY   ++ LC  +  DEA      M      P+    + L+ +  + GE D A      
Sbjct: 466 NTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDN 525

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           + + GC    +T+ ++++ L+   K E A  LL
Sbjct: 526 VVEVGCQPLGETFKILVEELYLRKKWEAASKLL 558



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 128/325 (39%), Gaps = 54/325 (16%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR------------------------ 202
           E ++ K  P++   + ++D  CK G +D A+ +  R                        
Sbjct: 350 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 409

Query: 203 ------------VKNKVKPNANTYNIL-----GMQTLEEMIQMGH-------APDNFTYN 238
                       V     P   TYN+L     G  ++E  +++ H        PD  TY 
Sbjct: 410 KSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYA 469

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
             I   C+AR V EA +  + M         P       ++  L +   ++E  S+L ++
Sbjct: 470 PLIQCLCRARRVDEAKEFLDVMEADNVV---PNGAICHALVEVLCKQGEVDEACSVLDNV 526

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
           +  GC P   T+K ++E + L  K E A K L    + G+  D  TY+  +  +C     
Sbjct: 527 VEVGCQPLGETFKILVEELYLRKKWEAASKLLR---SPGFVADAATYSLCVAEICKAGKP 583

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           DEA+ +  +M+  G  P   TY  ++     L   + A   + +M  RGCA  + TY ++
Sbjct: 584 DEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLL 643

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGL 443
           I         +EA  + E +V  G 
Sbjct: 644 IGEACSADMADEAFRIFEAMVAAGF 668



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 39/307 (12%)

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP--------------VDVLLM 160
           P+ +  ++   S  K   + FR+   M+      N  F+P               D +  
Sbjct: 395 PVTFMTLLHGFSEHKKSREAFRVHEDMV------NAGFIPGLQTYNVLMDCVCGADSVES 448

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-- 217
            L+ Y +  + K QP+ N    L+  LC+   VD A+     ++ + V PN    + L  
Sbjct: 449 ALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVE 508

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                         L+ ++++G  P   T+   ++     R   EAA   + +R+ G   
Sbjct: 509 VLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL-YLRKKWEAAS--KLLRSPGFVA 565

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
               A TY++ +  + +  + +E   ++  M+  G  PD  TY  VL  +C   +VE A 
Sbjct: 566 D---AATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAI 622

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              E+M ++G  P +VTY   +   C     DEA R++  M+  G  P  QT   L S  
Sbjct: 623 AEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCL 682

Query: 388 FELGEPD 394
            + G  D
Sbjct: 683 RDAGYQD 689


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 182/420 (43%), Gaps = 43/420 (10%)

Query: 81  TDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCS 140
           +  +VGV+       + A  FF WAG + ++ H    YN   + L  T    + +RL   
Sbjct: 56  SQRLVGVILHMVKNGESAMVFFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEEAYRL--- 112

Query: 141 MLDYMKRNNKVFVPVDVLLMILKQ--------------YTEKIKVKTQPEINALNLLLDA 186
              + ++  +  +P  +   IL +              Y E +    +P +     LL+A
Sbjct: 113 ---FKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNA 169

Query: 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA------------PDN 234
           LCK G ++ A    +++ +   P A T+ IL +  L   I++  A            P+N
Sbjct: 170 LCKSGNLELALRYFEKMSSI--PCAATWTIL-IDGLFRAIRVDEACYYFEEMKHTAIPNN 226

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           +TY   I+   KA  V EA  + + M         PT   Y  +I    +   M + + L
Sbjct: 227 WTYTVVINGLVKAGKVAEAERVLQEMPV-------PTLANYTSVIGGHCKAGDMGKAYHL 279

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M   G   D  TY  ++ G C   +++ AY+ LEEM +  + PDI TY+  +  LC 
Sbjct: 280 LEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCR 339

Query: 355 NKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            K   EA  L G +  E  C P+V +YN LI  + +    + A++ + EM   G   DV 
Sbjct: 340 AKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVV 399

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY  +I GL +  +  EA   LEE+V K +      + S +  L   G+L A   + D M
Sbjct: 400 TYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSM 459



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 17/290 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG------ 218
           Y E++K    P      ++++ L K G V  AE + + +   V   AN  +++G      
Sbjct: 214 YFEEMKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEMP--VPTLANYTSVIGGHCKAG 271

Query: 219 -----MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   LE+M + G+  DN TYNT I   C+ + +  A +L E M++       P   
Sbjct: 272 DMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFV---PDIF 328

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           TY I+I  L +  R+ E   LLG + N   C P+V +Y  +++G   A +V +AY+   E
Sbjct: 329 TYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLE 388

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  PD+VTY+  ++ LC+     EA      M+     P V  Y+ +IS     GE
Sbjct: 389 MVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGE 448

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            D A   +  M   GC  ++  Y  +I GL    ++ +A   ++E+  +G
Sbjct: 449 LDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERG 498



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 143/359 (39%), Gaps = 43/359 (11%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILGM---- 219
           E +  K  P++   + ++  LC+ G +D A T+    V N  +PN   YN  I G+    
Sbjct: 423 EMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTG 482

Query: 220 ------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF---------------- 257
                   ++EM + G +PD  TY T I   C+     EA DL+                
Sbjct: 483 RLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCN 542

Query: 258 -------------EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                          +R   +T +SPTA  YA +I +L + + + E   LL  MI +G  
Sbjct: 543 VVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIK 602

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PD ST   ++  MC   K   A  FLEEM   G  P + TY+  L  L       EA  +
Sbjct: 603 PDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVV 662

Query: 365 YGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
             R+I    C+P    Y  LI+ Y    + + A     E+  +   Q +  Y  ++ GLF
Sbjct: 663 LRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLF 722

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482
               ++    LL E+      +    F+  +     +G      ++   M+K   P  A
Sbjct: 723 RTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKKVLTPSAA 781



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 127/284 (44%), Gaps = 20/284 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GMQ 220
           P+I   ++L+  LC+   +  A  +   ++N+    PN  +YN L              Q
Sbjct: 325 PDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQ 384

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+  G  PD  TY+T I   C A   +EA    E M  K      P    Y+ +I 
Sbjct: 385 LFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKIL---PKVPVYSSVIS 441

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +   ++   ++   M+ +GC P+++ Y  ++ G+C  G++ +A   ++EM  +G  P
Sbjct: 442 GLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSP 501

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTY   +  LC     DEA  LY R +E G   S  + N++I+    L +        
Sbjct: 502 DGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRV- 560

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +   G +     Y  +I+ L   + + EA  LLE+++  G+K
Sbjct: 561 --VLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIK 602



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 9/209 (4%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T  TY     AL++  + EE + L         +PD  TY  ++ G+C  GK++ A    
Sbjct: 89  TVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLY 148

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           EEM ++G  P ++T    L  LC + N + ALR + +M  +   P   T+ +LI   F  
Sbjct: 149 EEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSI---PCAATWTILIDGLFRA 205

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
              D A   + EM       +  TY V+I+GL    KV EA  +L+E+    L      +
Sbjct: 206 IRVDEACYYFEEMKHTAIPNNW-TYTVVINGLVKAGKVAEAERVLQEMPVPTLA----NY 260

Query: 451 DSYLMQLSVIGDLG-AIHKLSDHMRKFYN 478
            S +      GD+G A H L D  RK Y 
Sbjct: 261 TSVIGGHCKAGDMGKAYHLLEDMKRKGYQ 289


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTLE 223
           E +  +  P+   L +++ +LC    VD A  + + + ++ +  NA TY+ L  G+   E
Sbjct: 174 EMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 233

Query: 224 -----------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                      E+ + G  PD  TY+T ID  CKA  + +A D+FE M        +PTA
Sbjct: 234 RLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS------CAPTA 287

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I    +   M+E   LLG M++  C PDV TY  ++   C  G++++AY+  ++
Sbjct: 288 ITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQ 347

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M      PD+VT+   +  LC     ++AL L   +   GC P++ TYN ++  Y +  +
Sbjct: 348 MVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQ 407

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
              A E   +   RG   +  TY +++ G     + ++A   L+++ ++G   P     +
Sbjct: 408 VRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP-----T 462

Query: 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483
            +   ++I D       +D   +FY  +I R
Sbjct: 463 SVAMYAIILDALCRDGRTDDAVQFYEEMIQR 493



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 133/282 (47%), Gaps = 19/282 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P+I   + ++D LCK G +  A  I + +     P A TYN L             ++ L
Sbjct: 253 PDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRAGDMDEAIRLL 310

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            +M+    APD  TY T +  FCK   + +A +LF+ M    +   SP   T+  ++  L
Sbjct: 311 GKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMV---ANKLSPDVVTFTSLVDGL 367

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               RME+   LL  +   GC P + TY  V++G C + +V +A + + +  ++G+ P+ 
Sbjct: 368 CGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNT 427

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETW 400
           VTYN  +   C     D+AL+   ++   G  C  SV  Y +++      G  D A + +
Sbjct: 428 VTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFY 487

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            EM +RG      T+  ++  L    + ++A  LLEE++  G
Sbjct: 488 EEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYG 529



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 18/244 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++     L+ A CK G +D A E   + V NK+ P+  T+  L             ++ 
Sbjct: 320 PDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALEL 379

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEE+ + G  P  +TYN  +D +CK+  V +A +L    R++G     P   TY I++  
Sbjct: 380 LEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFV---PNTVTYNILVAG 436

Query: 282 LVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             +  R ++    L  + + G  C   V+ Y  +L+ +C  G+ ++A +F EEM  +GY 
Sbjct: 437 CCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV 496

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P   T+   +  LC      +A  L   MI+ G  P   T + ++S Y   G    A E 
Sbjct: 497 PAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 556

Query: 400 WHEM 403
             E+
Sbjct: 557 ASEL 560



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 6/228 (2%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           LG   L+E+   G +PD    NT +   C AR  T A  LF+ M   G+   +    TY 
Sbjct: 29  LGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHT----TYY 84

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L +   ++E   LL  M + G  P    +  V+ G+C AG++  A     +M N 
Sbjct: 85  NLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM-ND 143

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
            +PPD +TY   +  L       +A+++   M+     P   T  +++         D A
Sbjct: 144 AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDA 203

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA-CFLLEEVVNKGL 443
            E   EM  RG A +  TY  ++DGL  C +++EA   LL EV  +G 
Sbjct: 204 RELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGF 251



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 143/354 (40%), Gaps = 50/354 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY-NIL-----------GMQT 221
            P+   LN +L  LC       A  +  ++      N  TY N++            M  
Sbjct: 43  SPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGL 102

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M   G  P    +N  I   C+A  +  A  ++  M    +    P   TY  ++  
Sbjct: 103 LLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM----NDAHPPDFLTYTKLVHG 158

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +   +L  M+++  +PD +T   V++ +CL  +V++A + +EEM ++G   +
Sbjct: 159 LSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAAN 218

Query: 342 IVTYNCFLKVLCDNKNGDEALRLY--------------------------GRMI------ 369
            +TY+  +  LC  +  DEA+ L                           GR+       
Sbjct: 219 AITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 278

Query: 370 -EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            E+ C P+  TYN LI  Y   G+ D A     +M    CA DV TY  ++       ++
Sbjct: 279 EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRL 338

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVI 481
           ++A  L +++V   L      F S +  L   G +  A+  L +  R+   P I
Sbjct: 339 DDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTI 392



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEE-AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           M+++G   D ST+  VL G+  + K+       L+E+ ++G  PD V  N  L  LCD +
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           +   A+ L+ +M E+G       YN LI    +    D A     +M  RG       + 
Sbjct: 61  DTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 417 VMIDGLFDCSKVEEA 431
           V+I GL    ++  A
Sbjct: 120 VVIGGLCRAGRLRHA 134



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 35/173 (20%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK-------------Q 164
           YN ++D    +    K   LV    D+  R    FVP  V   IL              Q
Sbjct: 395 YNCVVDGYCKSNQVRKAEELVA---DFRSRG---FVPNTVTYNILVAGCCRAGRTDQALQ 448

Query: 165 YTEKIKVKTQP---EINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--- 217
           Y +++  +  P    +    ++LDALC+ G  D A    +  ++    P A T+  +   
Sbjct: 449 YLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFA 508

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
                      + LEEMI+ GH P   T +  +  +C+A M+ +A +L   +R
Sbjct: 509 LCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 149/339 (43%), Gaps = 51/339 (15%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------ 217
           V   P +   NL++ A+CK GLVD A  + + +   K +P+  TY  L            
Sbjct: 193 VSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDE 252

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L+EM   G  P   T+N  I+  CK   ++ AA L + M  KG     P   TY  
Sbjct: 253 AVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCI---PNEVTYNT 309

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV----------LEGMCL-------- 319
           +I  L    ++E+  SLL  M++S C+P+V TY  +          L+G C+        
Sbjct: 310 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERG 369

Query: 320 -----------------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
                             GK +EA    +EM  KGY  + + Y+  +  LC +   D+A+
Sbjct: 370 YCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAV 429

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +   M   GC P+  T + L+  +FE G    A E W +M K    Q+   Y V+I GL
Sbjct: 430 EVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGL 489

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
               KV+EA  +  +++ KG K     + S +  LS+ G
Sbjct: 490 CKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAG 528



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 16/281 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P     N+L++ LCK G +  A  +   +  K   PN  TYN L             +  
Sbjct: 267 PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISL 326

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+     P+  TY T I+   K     + A +   M  +G  ++      Y+ +I  
Sbjct: 327 LDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNE---YVYSTLISG 383

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  + +E   L   M   G   +   Y  V++G+C  GK ++A + L EM NKG  P+
Sbjct: 384 LFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPN 443

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T +  +K   +  N   A+ ++  M +     +   Y++LI    + G+   A   W 
Sbjct: 444 AYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWT 503

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +M  +GC  DV  Y  MI+GL     VE+A  L  E++ +G
Sbjct: 504 QMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQG 544



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 5/178 (2%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L EM   G  P+ +T ++ +  F +A     A ++++ M     T        Y++
Sbjct: 428 AVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFT---QNEVCYSV 484

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L ++ +++E   +   M+  GC PDV  Y  ++ G+ +AG VE+A +   EM  +G
Sbjct: 485 LIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQG 544

Query: 338 --YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
               PD+VTYN  L  LC   +   A+ L   M++ GC P + T  + + M  E  +P
Sbjct: 545 PDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDP 602



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 3/201 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           ++N+ ++   +  +   A + +   +  KG +IS P   T+ ++I A+ +   +++   +
Sbjct: 163 SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSIS-PNVLTFNLVIKAMCKVGLVDDAIQV 221

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M    C PDV TY  +++G+C A +++EA   L+EM   G  P  VT+N  +  LC 
Sbjct: 222 FRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCK 281

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
             +   A +L   M   GC P+  TYN LI      G+ + A      M    C  +V T
Sbjct: 282 KGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVT 341

Query: 415 YCVMIDGLFDCSK-VEEACFL 434
           Y  +I+GL    + ++ AC L
Sbjct: 342 YGTIINGLVKQGRALDGACVL 362



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 5/201 (2%)

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            + KA +  +A DLF+ M  +       T K++  ++  ++Q            H+I + 
Sbjct: 134 AYGKAHLPEKAVDLFDRMACEFEC--KRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAK 191

Query: 303 CL---PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
            +   P+V T+  V++ MC  G V++A +   +M  +   PD+ TY   +  LC     D
Sbjct: 192 GVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRID 251

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EA+ L   M   GC+PS  T+N+LI+   + G+   A +    M  +GC  +  TY  +I
Sbjct: 252 EAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLI 311

Query: 420 DGLFDCSKVEEACFLLEEVVN 440
            GL    K+E+A  LL+ +V+
Sbjct: 312 HGLCLKGKLEKAISLLDRMVS 332



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 119/289 (41%), Gaps = 53/289 (18%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  LC  G ++ A ++  R V +K  PN  TY  +            G   L  M +
Sbjct: 308 NTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEE 367

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G+  + + Y+T I    K     EA  LF+ M  KG  +++     Y+ +I  L ++ +
Sbjct: 368 RGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNT---IVYSAVIDGLCRDGK 424

Query: 288 MEECFSLLGHMINSGCLPDVST-----------------------------------YKE 312
            ++   +L  M N GC P+  T                                   Y  
Sbjct: 425 PDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSV 484

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++ G+C  GKV+EA     +M  KG  PD+V Y+  +  L      ++A++LY  M+  G
Sbjct: 485 LIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQG 544

Query: 373 --CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
               P V TYN+L++   +      A +  + M  RGC  D+ T  + +
Sbjct: 545 PDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFL 593



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIE---VGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++N  L V+        AL  Y  +I    V   P+V T+N++I    ++G  D A + +
Sbjct: 163 SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVF 222

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +M  R C  DV TYC ++DGL    +++EA  LL+E+   G       F+  +  L   
Sbjct: 223 RDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKK 282

Query: 461 GDLGAIHKLSDHM 473
           GDL    KL D+M
Sbjct: 283 GDLSRAAKLVDNM 295



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEE-MGNKGYP--PDIVTYNCFLKVLCDNKNGDEALRLY 365
           ++  VL  +   G    A +F    +G KG    P+++T+N  +K +C     D+A++++
Sbjct: 163 SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVF 222

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M    C P V TY  L+    +    D A     EM   GC     T+ V+I+GL   
Sbjct: 223 RDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKK 282

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +  A  L++ +  KG       +++ +  L + G L     L D M
Sbjct: 283 GDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRM 330



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 34/185 (18%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GM 219
           TQ E+   ++L+  LCK G V  A  +  ++  K  KP+   Y+ +             M
Sbjct: 476 TQNEV-CYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAM 534

Query: 220 QTLEEMIQMG--HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           Q   EM+  G    PD  TYN  ++T CK   ++ A DL   M  +G      T   +  
Sbjct: 535 QLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLR 594

Query: 278 M------------------IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M                  +V L++  R+     ++  M+     P  ST+  V+E +C 
Sbjct: 595 MLREKLDPPQDGREFLDELVVRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVENLCK 654

Query: 320 AGKVE 324
             KV+
Sbjct: 655 PKKVQ 659


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 13/272 (4%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L+EM   G  PD    N  ++  CKAR + +A +LF  M + G     PT  +Y  +
Sbjct: 5   LDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGC---EPTIVSYNTV 61

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L   D+M+E +     MI++GC PDV  +  ++ G C AG+ +  +  L +   K +
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQ-ALKRF 120

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  Y   +   C   + D   ++   M+  GC P    Y +LI    +LG  D A+E
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF-DSYLMQL 457
            +  M K GC  D  T+  +I+ L +  K++EAC L  E++ +G + PY +  DS +  L
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYE-PYLEVQDSLIFAL 239

Query: 458 SVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489
              G +       D   + Y  V+A+++A ++
Sbjct: 240 CKAGKV-------DEANEIYQTVVAKKVATSR 264



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 155/354 (43%), Gaps = 41/354 (11%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQ 220
           LK   + ++    P+I   N+L+    +   +D A  + K + +   KPNA TY  + +Q
Sbjct: 284 LKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTI-IQ 342

Query: 221 TLEEMIQMGHAP-------DNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------- 264
            L +  +M  A        D  +Y T I     ++ + EA +LFE ++T G         
Sbjct: 343 GLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYT 402

Query: 265 -----------------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
                                   +   PT  TY ++I  L +   + +   +   M+  
Sbjct: 403 AVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQK 462

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           GC+PD  TY  +++G   A K++EA K L+ M  KG  P  VTY   +   C     +EA
Sbjct: 463 GCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEA 522

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             +  +M E GC P +  +  L+S Y   G  + A++   EM  RGCA DV  Y  +ID 
Sbjct: 523 KEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDL 582

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           LF   +V EA  + + ++ KG       + + +   S IG++ A  ++ + M K
Sbjct: 583 LFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAK 636



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 17/292 (5%)

Query: 167 EKIKVKT-QPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------- 217
           EK+K     P + A   ++D L K G + D  +       +   P   TY ++       
Sbjct: 387 EKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKA 446

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  +  E+M+Q G  PD  TY T ID F KA  + EA  L + M TKG     PTA
Sbjct: 447 QMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP---EPTA 503

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  ++    + D + E   ++  M   GC P +  +  +L      G+ EEAY+ L E
Sbjct: 504 VTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTE 563

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +G  PD++ Y   + +L       EA  ++  MIE GC P   TY  +I  + ++G 
Sbjct: 564 MTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGN 623

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            + A E    M K G   D   Y  ++DG     +V++A  + + +V  G+K
Sbjct: 624 VEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIK 675



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 129/290 (44%), Gaps = 15/290 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----- 217
           K +   I    +P++ A   L+   CK G       +  +   + +P+   Y  +     
Sbjct: 76  KFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYC 135

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                  G + LEEM+  G  PD   Y   ID  CK   V EA +LFE MR  G      
Sbjct: 136 KAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCL---G 192

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              T+  +I AL  + +++E   L   MI  G  P +     ++  +C AGKV+EA +  
Sbjct: 193 DYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIY 252

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           + +  K      V YN  +   C     D+ L+L  +M+E   +P +QTYN+L++ +   
Sbjct: 253 QTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRA 312

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
              D A E +  +   GC  +  TY  +I GL+D  ++EEA    +E ++
Sbjct: 313 NRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD 362



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 45/332 (13%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           Y E I+   +P +   + L+ ALCK G VD A  I + V   KV  +   YN L      
Sbjct: 217 YREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCK 276

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G++ L +M++  + PD  TYN  +  F +A  + +A +LF+ + + G     P 
Sbjct: 277 LGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGC---KPN 333

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMIN-----------------------------SG 302
           A TY  +I  L    RMEE  +     ++                             +G
Sbjct: 334 AATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAG 393

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P+V  Y  V++G+  AG++E+  K  E+M      P   TY   +  LC  +   +A 
Sbjct: 394 CSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDAC 453

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +++ +M++ GC P   TY  LI  + +  + D A +    M  +G      TY  ++ G 
Sbjct: 454 KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF 513

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
                + EA  ++ ++  +G +     F S L
Sbjct: 514 CKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 545



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 17/271 (6%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           TE       P++     L+D L   G V  A  +    ++    P+A TY  +       
Sbjct: 562 TEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKI 621

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  + LE M + G  PD F YN+ +D + K   V +A  +++ M   G     P A
Sbjct: 622 GNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI---KPNA 678

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMCLAGKVEEAYKFLE 331
            T+ +++  L ++ + +  FSL   M+    +P  + +Y  +++G+  AG+V EA+   +
Sbjct: 679 VTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQ 738

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G  P+  TY   +  L       EA +L   M+++G  P VQ Y+ LI+   +  
Sbjct: 739 EMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSS 798

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             D A++ + EM KRGCA +  TY V+  G 
Sbjct: 799 MVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 829



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              + MI+ G APD  TY T I  F K   V  A ++ E M   G     P    Y  ++
Sbjct: 594 HVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGV---GPDCFAYNSLM 650

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-Y 338
              V+ +R+++ F +   M+ SG  P+  T+  ++ G+   GK + A+   +EM  K   
Sbjct: 651 DGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEV 710

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PP +V+Y   +  L       EA   +  MI+ G  P   TY  LI    + G    A +
Sbjct: 711 PPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKK 770

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              +M K G   DV  Y  +I GL D S V+ A  + +E++ +G
Sbjct: 771 LVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 814



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 92/227 (40%), Gaps = 35/227 (15%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           MEE    L  M  +G +PDV     VL G+C A K+++A +   EM + G  P IV+YN 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP-------------- 393
            +  L      DEA + +  MI+ GC P V  +  LI  + + G+P              
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 394 --------------------DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
                               D  F+   EM   GC  D   Y V+ID L    +V+EA  
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
           L E +   G    Y  F + +  LS  G L    +L   M  + Y P
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 17/172 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL----- 217
           Y   +    +P     N+L+  L K G  D A ++ K +  K++V P   +Y IL     
Sbjct: 666 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLG 725

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                       +EMI  G  P+  TY + I +  KA  + EA  L E M   G    +P
Sbjct: 726 KAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGV---NP 782

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
             + Y+ +I  L+ +  ++  + +   M+  GC P+  TYK +  G   AG+
Sbjct: 783 DVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 834


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 147/337 (43%), Gaps = 15/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVK 208
           K F     L   L  + +  K+   P++     LL  LC    V  A +   +  +   +
Sbjct: 122 KCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCR 181

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  T+  L             +  L+ M++ G  P   TY T +D  CK      A +L
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M      I  P    Y+ +I +L ++ R  +  +L   M   G  PD+ TY  ++ G
Sbjct: 242 LRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C +G+  +A + L+EM  +   PD+VTYN  +          EA  LY  M+  G  P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 359

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TYN +I  + +    D A + ++ M  +GC+ DV T+  +IDG     ++++   LL 
Sbjct: 360 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 419

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+  +GL      +++ +    ++GDL A   LS  M
Sbjct: 420 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 456



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 27/303 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E +     P     N ++D  CK   +D AE +   +  K   P+  T+  L      
Sbjct: 348 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 407

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+ L EM + G   +  TYNT I  FC    +  A DL + M + G     P 
Sbjct: 408 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC---PD 464

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLA 320
             T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   
Sbjct: 465 IVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINE 524

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GK  EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 584

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           N LI+ Y + G  D   E + EM +RG   D   Y  +I G      +  A  + +E+++
Sbjct: 585 NTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMIS 644

Query: 441 KGL 443
            G+
Sbjct: 645 SGV 647



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L  + +  +   +P +     L++ LC+ G +  A  +  R+ ++ ++P   TY  +   
Sbjct: 169 LDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 218 ---------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                     +  L +M ++ H  P+   Y+  ID+ CK    ++A +LF  M+ KG   
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF- 287

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  MIV    + R  +   LL  M+     PDV TY  ++      GK  EA 
Sbjct: 288 --PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAA 345

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  +EM  +G  P+ +TYN  +   C     D A  ++  M   GC P V T+  LI  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 405

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 D   E  HEM +RG   +  TY  +I G      +  A  L +++++ G+
Sbjct: 406 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 461



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++     L+D  C    +D   E + +  +  +  N  TYN L             + 
Sbjct: 392 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 451

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
             ++MI  G  PD  T NT +D  C    + +A ++F+ M+     + +        P  
Sbjct: 452 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDV 511

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +    
Sbjct: 512 LTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVS 571

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+N  +   C     D+ L L+  M   G       Y  LI  + ++G 
Sbjct: 572 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 631

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ G +   ++E A  +LE++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 120/272 (44%), Gaps = 17/272 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GM 219
           QP       ++D +CK G    A  + ++++  + + PN   Y+ +              
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM + G  PD FTYN+ I  FC +   ++A  L + M  +     SP   TY  +I
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI---SPDVVTYNALI 332

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A V+  +  E   L   M+  G +P+  TY  +++G C   +++ A      M  KG  
Sbjct: 333 NAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCS 392

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+ T+   +   C  K  D+ + L   M   G   +  TYN LI  +  +G+ + A + 
Sbjct: 393 PDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDL 452

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             +M   G   D+ T   ++DGL D  K+++A
Sbjct: 453 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 484



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 5/180 (2%)

Query: 244 FCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           F + + + +A DLF + +R++      P+   +  ++  +V+ +R +   SL   M    
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSR----PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              D+ ++  +++  C   K+  A     ++   G  PD+VT+   L  LC      EAL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             + +M E  C P+V T+  L++     G    A      M + G      TY  ++DG+
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQ 220
            P + A   ++D L K G + D  +   +   +   P   TY ++              +
Sbjct: 140 SPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACK 199

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E+M+Q G  PD  TY T ID F KA  + EA  L + M TKG     PTA TY  ++ 
Sbjct: 200 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP---EPTAVTYGSIVH 256

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              + D + E   ++  M   GC P +  +  +L      G+ EEAY+ L EM  +G  P
Sbjct: 257 GFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAP 316

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D++ Y   + +L       EA  ++  MIE GC P   TY  +I  + ++G  + A E  
Sbjct: 317 DVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEIL 376

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             M K G   D   Y  ++DG     +V++A  + + +V  G+K
Sbjct: 377 ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIK 420



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 123/256 (48%), Gaps = 3/256 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  EE+   G +P+   Y   ID   KA  + +    FE M   GS+   PT  TY ++I
Sbjct: 129 ELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM--SGSS-CVPTRTTYTVVI 185

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +   + +   +   M+  GC+PD  TY  +++G   A K++EA K L+ M  KG  
Sbjct: 186 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 245

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P  VTY   +   C     +EA  +  +M E GC P +  +  L+S Y   G  + A++ 
Sbjct: 246 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 305

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             EM  RGCA DV  Y  +ID LF   +V EA  + + ++ KG       + + +   S 
Sbjct: 306 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 365

Query: 460 IGDLGAIHKLSDHMRK 475
           IG++ A  ++ + M K
Sbjct: 366 IGNVEAAGEILELMAK 381



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 152/376 (40%), Gaps = 53/376 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL--- 217
           LK + E       P      +++D LCK  ++ D  +   + V+    P+  TY  L   
Sbjct: 163 LKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 222

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + L+ M+  G  P   TY + +  FCK  M+ EA ++   MR +G    
Sbjct: 223 FSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGC--- 279

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS-------------------- 308
            P    +  ++   +   R EE + +L  M   GC PDV                     
Sbjct: 280 EPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARH 339

Query: 309 ---------------TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
                          TY  +++     G VE A + LE M   G  PD   YN  +    
Sbjct: 340 VFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYV 399

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRGCAQDV 412
             +  D+A  +Y RM+  G  P+  T+N+L+   F+ G+ D AF  + EM +K      +
Sbjct: 400 KLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTL 459

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            +Y ++IDGL    +V EA    +E++++G+      + S +  L+  G +    KL + 
Sbjct: 460 VSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVED 519

Query: 473 MRKF-YNPVIARRLAL 487
           M K   NP +    AL
Sbjct: 520 MVKLGVNPDVQAYSAL 535



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 17/271 (6%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           TE       P++     L+D L   G V  A  +    ++    P+A TY  +       
Sbjct: 307 TEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKI 366

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  + LE M + G  PD F YN+ +D + K   V +A  +++ M   G     P A
Sbjct: 367 GNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI---KPNA 423

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMCLAGKVEEAYKFLE 331
            T+ +++  L ++ + +  FSL   M+    +P  + +Y  +++G+  AG+V EA+   +
Sbjct: 424 VTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQ 483

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G  P+  TY   +  L       EA +L   M+++G  P VQ Y+ LI+   +  
Sbjct: 484 EMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSS 543

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             D A++ + EM KRGCA +  TY V+  G 
Sbjct: 544 MVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 574



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              + MI+ G APD  TY T I  F K   V  A ++ E M   G     P    Y  ++
Sbjct: 339 HVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGV---GPDCFAYNSLM 395

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-Y 338
              V+ +R+++ F +   M+ SG  P+  T+  ++ G+   GK + A+   +EM  K   
Sbjct: 396 DGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEV 455

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PP +V+Y   +  L       EA   +  MI+ G  P   TY  LI    + G    A +
Sbjct: 456 PPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKK 515

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              +M K G   DV  Y  +I GL D S V+ A  + +E++ +G
Sbjct: 516 LVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 559



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 31/204 (15%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  +Y  +I  L   D+M+E +     MI++GC PDV  +  ++ G C AG+ +  +K 
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 330 LEEMGNKGYPP-------------------------------DIVTYNCFLKVLCDNKNG 358
           L +   +  P                                D+++Y   +K L D+K  
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRI 124

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           DEA  L+  +   GC P+V  Y  +I    + G  +   + + EM    C     TY V+
Sbjct: 125 DEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVV 184

Query: 419 IDGLFDCSKVEEACFLLEEVVNKG 442
           IDGL     + +AC + E++V KG
Sbjct: 185 IDGLCKAQMLPDACKVFEQMVQKG 208



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           GC P + +Y  V+ G+    K++EAYKF   M + G  PD++ +   +   C        
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            +L  + ++    P V  Y  +I  Y + G+ D  +  +  +  +  + DV +Y  +I G
Sbjct: 62  HKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGY--FRAVTPKA-SLDVISYTTVIKG 117

Query: 422 LFDCSKVEEACFLLEEVVNKG 442
           L D  +++EAC L EE+   G
Sbjct: 118 LADSKRIDEACELFEELKTAG 138



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL----- 217
           Y   +    +P     N+L+  L K G  D A ++ K +  K +V P   +Y IL     
Sbjct: 411 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLG 470

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                       +EMI  G  P+  TY + I +  KA  + EA  L E M   G    +P
Sbjct: 471 KAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGV---NP 527

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
             + Y+ +I  L+ +  ++  + +   M+  GC P+  TYK +  G   AG+
Sbjct: 528 DVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 579


>gi|125536538|gb|EAY83026.1| hypothetical protein OsI_38244 [Oryza sativa Indica Group]
          Length = 1117

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 184/429 (42%), Gaps = 50/429 (11%)

Query: 58   IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
            I+ +S+ + ++E+AL+   +  T D V  +++R +   + A +FF W G +  Y      
Sbjct: 699  ILSSSDCWSSIEQALEMTSISFTPDLVEAIMKRCKANSRAALQFFSWVGKRSYYMQTTKT 758

Query: 118  YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
            YN  I +  S    AK F+ +  +                       Y E I  +  P +
Sbjct: 759  YNTAIKLAGS----AKDFKHMRHL-----------------------YREMIWAECCPTV 791

Query: 178  NALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGM--------------QTL 222
            N  N+++      GL + A ET  +  +   +P+  TY+ L M              +  
Sbjct: 792  NTWNVMICQYGNAGLTEMALETFYQMKQGGFQPDKTTYSHLIMYLSRRKGRKVDAAVKIF 851

Query: 223  EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             EM + G+ PDN    T +   C+  M+  A      +   G +I +     Y+I+I +L
Sbjct: 852  HEMCRAGYIPDNGMVRTYLSVLCECGMIDRAESSVVLLCKHGFSIQA----GYSILIRSL 907

Query: 283  VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             ++DRM E  SL  ++ N GC      Y  ++  +    + E+A   L EM N G     
Sbjct: 908  CRSDRMAEALSLFDNIKNYGCSRSAYMYGSLIHVLLRRDRFEDASAKLAEMKNLGIAQST 967

Query: 343  VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
              Y  F+      ++  +A+ +   M E GC P+V TY+ LI  +  +G    A++ +  
Sbjct: 968  HMYTSFMIYYLGKRDVSKAMDVLKEMTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQR 1027

Query: 403  MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
            M  +G   D +TY + +  L    + E+   L+ +++N G+      F + +  L++ G 
Sbjct: 1028 MKLKGPVPDFETYSMFMSCLCKAGRSEDGLQLIHDMLNSGIIPSALNFRTVVHGLNMEGK 1087

Query: 463  LGAIHKLSD 471
                +KL+D
Sbjct: 1088 ----YKLAD 1092



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 173/417 (41%), Gaps = 36/417 (8%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           ++E+ L++LGV  T   V  VL R   +  + F+FF W      + +    YN M+ I  
Sbjct: 194 SVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGFKFFDWVRQVPGFQNTTETYNAMLYIAG 253

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV--------------K 172
               + + F  +  ++D M +       +    +++  Y +  ++               
Sbjct: 254 ----EERNFGAMEKLMDEMDKE-MCLKDIKTWTIVISSYGKARQIGKMLSTFQAMGKSRH 308

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLE---- 223
              +      +L ALC     + A    K +    +  ++ + +L     G    E    
Sbjct: 309 VAADSKVYRTILRALCNSAKSELALEFYKDMARNTEVGSDIFRLLLCCLAGSDNAEGVFY 368

Query: 224 ---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI+    P+ + Y  A+ +FC +  + EA  +F+ M  K  +I+S +A  + I++ 
Sbjct: 369 VRDDMIKSMKYPEEYCYLEALRSFCVSGKIEEAQKIFQQMMNK--SIASSSA--FEILLR 424

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ RM++   ++ +M  S      +T+  +++G    G+  +A + L+EM   G  P
Sbjct: 425 GLCKDGRMDKALQVMEYM-KSNSSASSATFGSLIDGYLRKGERMKALEVLQEMREYGCVP 483

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
              +Y   ++ L      + A RLY  M E G  P V     LI  +   G    A++ +
Sbjct: 484 LASSYTQLMQHLFAFDQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAF 543

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             +++ G    +  Y V I  L   S+  EA  LL+E++    +   + F   +  L
Sbjct: 544 RNINENGQKPTLKAYTVFIQELCKASRPLEALKLLKEMLESDFRPSEQTFSRIISTL 600



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 26/292 (8%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
           N A   LA     D+  +T+  +  FRL+   L        VF   D          + I
Sbjct: 325 NSAKSELALEFYKDMARNTEVGSDIFRLLLCCLAGSDNAEGVFYVRD----------DMI 374

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------ 217
           K    PE       L + C  G ++ A+ I +++ NK   +++ + IL            
Sbjct: 375 KSMKYPEEYCYLEALRSFCVSGKIEEAQKIFQQMMNKSIASSSAFEILLRGLCKDGRMDK 434

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +Q +E M +   +  + T+ + ID + +     +A ++ + MR  G     P A +Y  
Sbjct: 435 ALQVMEYM-KSNSSASSATFGSLIDGYLRKGERMKALEVLQEMREYGCV---PLASSYTQ 490

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L   D+ E    L   M  +G  PDV     ++ G    G + EA+     +   G
Sbjct: 491 LMQHLFAFDQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAFRNINENG 550

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             P +  Y  F++ LC      EAL+L   M+E    PS QT++ +IS  ++
Sbjct: 551 QKPTLKAYTVFIQELCKASRPLEALKLLKEMLESDFRPSEQTFSRIISTLYD 602



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 218  GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             M  L+EM + G  P   TY+  I       MV+EA D+F+ M+ KG     P  +TY++
Sbjct: 986  AMDVLKEMTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKGPV---PDFETYSM 1042

Query: 278  MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +  L +  R E+   L+  M+NSG +P    ++ V+ G+ + GK + A   L+
Sbjct: 1043 FMSCLCKAGRSEDGLQLIHDMLNSGIIPSALNFRTVVHGLNMEGKYKLADSVLQ 1096


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 192/453 (42%), Gaps = 57/453 (12%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           ++  ALD  G+      +  V   F    K+    F+WA  +  +      +N M++ L 
Sbjct: 99  SLRTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQSSAALFNSMVNFLG 158

Query: 127 STKYKAKQF-RLVCSMLDYMKRNNKV-FVPVDVLLMILKQYTE----KIKVKTQPEINAL 180
               KA++F    C +LD +  N     V  D   +++++YT     +  ++T    ++L
Sbjct: 159 ----KAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAAIRTFEYASSL 214

Query: 181 NL-------------LLDALCKCGLVDYAETICKRVKNKVK---PNANTYNIL------- 217
           +L             LLD+LCK G V  A     R   K     P+   YNIL       
Sbjct: 215 DLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRS 274

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  +   EM +    P   TY T ++ + + R V  A +L + M+ +G  I S  A
Sbjct: 275 RKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREG--IKS-NA 331

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  +I AL +  R +E   ++ H       P +STY  +++G C AG +  A K L+ 
Sbjct: 332 IVYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKM 391

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M ++   P   TYN F +     +  +E + LY +MIE G  P   TY++L+ M  E   
Sbjct: 392 MISREVFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEER 451

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A +   EM  RGC  D+ T  +    L    + EEA    E+++ +G+   Y  F  
Sbjct: 452 LDLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTF-- 509

Query: 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485
                         H+L+D  RK     +ARRL
Sbjct: 510 --------------HRLNDEFRKQGLTELARRL 528


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 136/282 (48%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+I   N+L+D +CK G V  A+ + K +    V+P+  TY+ L              + 
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            + MI  G  PD F+YN  I+ +CK + + EA  LF  M  +G T   P   +Y  +I  
Sbjct: 366 FDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLT---PNNVSYNTLIHG 422

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q   + E  +L  +M  +G LP++ TY  +L+G C  G   +A++    M +    P+
Sbjct: 423 LCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPN 482

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V YN  +  +C + N  +A +L+  +   G  P+ Q Y  +I+   + G  D A E + 
Sbjct: 483 LVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFR 542

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M++ GC  D  +Y V+I G         A  L+ E+ +KG 
Sbjct: 543 NMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGF 584



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 145/313 (46%), Gaps = 16/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P I  L++L++       VD A   + K +K  ++P   T+  L             M+ 
Sbjct: 131 PNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMEL 190

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M+  G  PD +TY T I+  CK      AA L + M   G     P   TY+ +I +
Sbjct: 191 FDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGC---QPNVVTYSTIIDS 247

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++ R+ E   +  +M   G  PD+ TY  +++G+C   + +EA   L EM +    PD
Sbjct: 248 HRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPD 307

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVT+N  +  +C      EA  +   M E+G  P V TY+ L+  Y    E   A + + 
Sbjct: 308 IVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFD 367

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M  +GC  DV +Y ++I+G     +++EA  L  E++++GL      +++ +  L  +G
Sbjct: 368 AMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLG 427

Query: 462 DLGAIHKLSDHMR 474
            L     L  +M 
Sbjct: 428 SLREARNLFKNMH 440



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 17/291 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           IK+  QP I     L++ LCK G    A E     V    +P+  TY  +          
Sbjct: 160 IKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGET 219

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 L++M + G  P+  TY+T ID+  K R V EA D+F +M+ KG    SP   TY
Sbjct: 220 AAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKG---ISPDIFTY 276

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L    + +E  +LL  M +   +PD+ T+  +++ +C  GKV EA   L+ M  
Sbjct: 277 NSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTE 336

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  PD+VTY+  +          EA +L+  MI  GC P V +YN+LI+ Y ++   D 
Sbjct: 337 MGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDE 396

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           A + ++EM  +G   +  +Y  +I GL     + EA  L + +   G  LP
Sbjct: 397 AKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNG-NLP 446



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           QP +   + ++D+  K   V+ A  I   +K K + P+  TYN L               
Sbjct: 235 QPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASA 294

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM  +   PD  T+N  +DT CK   V+EA  + + M   G     P   TY+ ++ 
Sbjct: 295 LLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGV---EPDVVTYSSLMY 351

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  + E   L   MI  GC PDV +Y  ++ G C   +++EA +   EM ++G  P
Sbjct: 352 GYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTP 411

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + V+YN  +  LC   +  EA  L+  M   G  P++ TY++L+  + + G    AF  +
Sbjct: 412 NNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLF 471

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             M       ++  Y ++ID +     + +A  L  E+  KGL+
Sbjct: 472 RAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQ 515



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 25/252 (9%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           K +   I    +P++ + N+L++  CK   +D A+                      Q  
Sbjct: 364 KLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAK----------------------QLF 401

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EMI  G  P+N +YNT I   C+   + EA +LF+ M T G+    P   TY+I++   
Sbjct: 402 NEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL---PNLFTYSILLDGF 458

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +     + F L   M ++   P++  Y  +++ MC +G + +A K   E+  KG  P+ 
Sbjct: 459 CKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNA 518

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
             Y   +  LC     DEAL  +  M E GC P   +YN++I  +    +   A +   E
Sbjct: 519 QIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGE 578

Query: 403 MDKRGCAQDVDT 414
           M  +G   DV T
Sbjct: 579 MRDKGFIADVGT 590



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP   T +I+I       R++  FS+L  +I  G  P + T+  ++  +C  GK  +A +
Sbjct: 130 SPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAME 189

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M  +G  PD+ TY   +  LC       A  L  +M E GC P+V TY+ +I  + 
Sbjct: 190 LFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHR 249

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           +    + A + +  M  +G + D+ TY  +I GL + S+ +EA  LL E+
Sbjct: 250 KDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEM 299



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 4/236 (1%)

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ-NDRMEECFSLLGHMIN 300
           D  C  R + +A   F  M  +      P    +  ++ A+V+     +   SL   M  
Sbjct: 70  DDACSFRNIDDALASFNHMLHRKPL---PCIIQFTKLLSAIVKMGQYYDTVISLTKQMEL 126

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +G  P++ T   ++       +V+ A+  L ++   G  P IVT+   +  LC      +
Sbjct: 127 AGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQ 186

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+ L+  M+  GC P V TY  +I+   ++GE   A     +M++ GC  +V TY  +ID
Sbjct: 187 AMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIID 246

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
                 +V EA  +   +  KG+      ++S +  L           L + MR  
Sbjct: 247 SHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL 302


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 204/453 (45%), Gaps = 38/453 (8%)

Query: 44  SSDSVS--DVAKLYEAIIDNSNAYDNMEK--ALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
           SSD V+  +VA L ++         N EK  +L SL   ++ +    V+   + +  I  
Sbjct: 36  SSDQVAAHNVASLLKS--------PNWEKNSSLKSLVSHMSPNVASQVISLQRSDNDICV 87

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
           RFFMW     +Y  +P   N ++ ++ S+        ++ +++    R  K  + +    
Sbjct: 88  RFFMWVCKHSSYCFDPTQKNQLLKLIVSSGLFRVAHDVIVALIRECSRCEKEMLKLISCF 147

Query: 160 MILKQYT----------------EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203
             L++ +                 K+ +     +    +  D     G++DY   +    
Sbjct: 148 DELREVSGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFV-VGMIDYRTIVNALC 206

Query: 204 KNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           KN     A  +       + +++++G   D+    + +  FC+   + +A  +F+ M  +
Sbjct: 207 KNGYTEAAEMF-------MCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSRE 259

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G+   +P + +Y+I+I  L +  R+EE F L   M   GC P   TY  +++ +C  G +
Sbjct: 260 GTC--APNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLI 317

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           ++A+   +EM  +G  P++ TY   +  LC +   +EA  +  +M++ G +PSV TYN L
Sbjct: 318 DKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNAL 377

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I+ Y + G    AFE    M+KR C  +V T+  +++GL    K  +A  LL+ +++ GL
Sbjct: 378 INGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGL 437

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
                 ++  +  L   G +   +KL   M  F
Sbjct: 438 SPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSF 470



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 129/278 (46%), Gaps = 16/278 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P   + ++L+  LC+ G ++ A  +  ++  K  +P+  TY +L                
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EMI  G  P+  TY   ID  C+   + EA  +   M   G     P+  TY  +I  
Sbjct: 324 FDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIF---PSVITYNALING 380

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++ R+   F LL  M    C P+V T+ E++EG+C  GK  +A   L+ M + G  PD
Sbjct: 381 YCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPD 440

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IV+YN  +  LC   + + A +L   M      P   T+  +I+ + + G+ D A     
Sbjct: 441 IVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLG 500

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            M ++G + D  T   +IDG+ +  K  +A F+LE +V
Sbjct: 501 LMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLV 538



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 127/315 (40%), Gaps = 51/315 (16%)

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNA 211
           VP   LL +++      K   +P +   N L++ LC+ G    A  + KR + N + P+ 
Sbjct: 388 VPAFELLTVME------KRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            +YN+L              + L  M      PD  T+   I+ FCK      A+     
Sbjct: 442 VSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGL 501

Query: 260 MRTKGSTISSPTAKTY------------AIMIVALVQNDRM------------------- 288
           M  KG ++   T  T             A+ I+  +   RM                   
Sbjct: 502 MLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCK 561

Query: 289 -EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E  ++LG +   G +P V TY  +++G+  +G +  +++ LE M   G  P++  Y  
Sbjct: 562 LKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTI 621

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC     +EA +L   M + G  P+  TY +++  Y   G+ D A ET   M +RG
Sbjct: 622 IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERG 681

Query: 408 CAQDVDTYCVMIDGL 422
              +   Y  ++ G 
Sbjct: 682 YELNDRIYSSLLRGF 696



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 141/373 (37%), Gaps = 86/373 (23%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--------------------- 203
           + E I    +P ++   +L+D LC+ G ++ A  +C+++                     
Sbjct: 324 FDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCK 383

Query: 204 ---------------KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFT 236
                          K   KPN  T+N L             +  L+ M+  G +PD  +
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVS 443

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN  ID  C+   +  A   ++ + +  S    P   T+  +I A  +  + +   + LG
Sbjct: 444 YNVLIDGLCREGHMNVA---YKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLG 500

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM---------------------GN 335
            M+  G   D  T   +++G+C  GK  +A   LE +                     G 
Sbjct: 501 LMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGC 560

Query: 336 K--------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K              G  P +VTY   +  L  + +   + R+   M   GC P+V  Y 
Sbjct: 561 KLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYT 620

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           ++I+   + G  + A +    M   G + +  TY VM+ G  +  K++ A   +  +V +
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680

Query: 442 GLKLPYRKFDSYL 454
           G +L  R + S L
Sbjct: 681 GYELNDRIYSSLL 693



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 136/340 (40%), Gaps = 44/340 (12%)

Query: 168 KIKVKTQPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
           K+++ T P  ++LN++LD L K C L +    + K  K  + P+  TY  L         
Sbjct: 539 KMRMLTTP--HSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                + LE M   G  P+ + Y   I+  C+   V EA  L   M+  G    SP   T
Sbjct: 597 ISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV---SPNHVT 653

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK---------VEE 325
           Y +M+   V N +++     +  M+  G   +   Y  +L G  L+ K         ++E
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKE 713

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
               +E++G  G    +  +   +  LC     DE+  L   +++ G +   +  ++++ 
Sbjct: 714 LISVVEQLG--GSTSGLCIF--LVTRLCKEGRTDESNGLVQTILKSGVFLE-KAIDIIME 768

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE------VV 439
            Y    +     E    + K G      ++C++I GL      E A  L+ E      VV
Sbjct: 769 SYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVV 828

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            K   LPY +    LM+    GD   +  L D +     P
Sbjct: 829 EKSGVLPYVE---CLME---TGDCSEVIDLVDQLHSRERP 862


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 16/312 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L  + + +     P +   ++LLDA CK      A  +   ++ K  +P+  TYN+L   
Sbjct: 182 LAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINA 241

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +  L ++   G  PD  TY   + + C +    E  +LF  M    S   
Sbjct: 242 MCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEM---ASNKC 298

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   T+  ++ +L Q   ++    ++ HM   GC+PD+ TY  +L+G+C  G+V++A +
Sbjct: 299 APDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVE 358

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  + + G  PD + Y   LK LC  +  + A  L   M+   C P   T+N +I+   
Sbjct: 359 LLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLC 418

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G  D A +   +M + GC  D+ TY  +IDGL +   +++A  LL  + + G K    
Sbjct: 419 QKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIV 478

Query: 449 KFDSYLMQLSVI 460
            F++ L  L  +
Sbjct: 479 TFNTLLKGLCSV 490



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 18/291 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNAN--TYNIL--------GMQTLEEMIQ-MG 229
           N+L+  LC  G V  AE    RV   +  +A   TYN +         ++    +I  M 
Sbjct: 102 NILIKRLCSGGRVADAE----RVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMP 157

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD FT+N  I   C    V +A  +F+ M  +G    SP+  TY+I++ A  +     
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGC---SPSVVTYSILLDATCKASGYR 214

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   LL  M   GC PD+ TY  ++  MC  G V+EA   L ++ + G  PD VTY   L
Sbjct: 215 QAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVL 274

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           K LC ++   E   L+  M    C P   T+N +++   + G  D A +    M + GC 
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCI 334

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            D+ TY  ++DGL D  +V++A  LL  + + G K     + + L  L  I
Sbjct: 335 PDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSI 385



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 16/301 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTY-----NILGMQTLEE--- 224
           +P+I   N+L++A+C  G VD A  I   +  +  KP+A TY     ++ G +  +E   
Sbjct: 229 EPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEE 288

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M     APD  T+NT + + C+  +V  A  + + M   G     P   TY+ ++ 
Sbjct: 289 LFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCI---PDIVTYSSILD 345

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    R+++   LL  + + GC PD   Y  VL+G+C   + E A + + EM     PP
Sbjct: 346 GLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPP 405

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VT+N  +  LC     D A+++  +M E GC P + TYN +I         D A E  
Sbjct: 406 DEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELL 465

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
             +   GC  D+ T+  ++ GL    + E+A  L+  +++         F++ +  L   
Sbjct: 466 SNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQK 525

Query: 461 G 461
           G
Sbjct: 526 G 526



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 148/303 (48%), Gaps = 23/303 (7%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANT 213
           VD  + +++Q +E       P+I   N ++D LC    +D A  +   +++   KP+  T
Sbjct: 423 VDRAIKVVEQMSEN---GCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVT 479

Query: 214 YNIL--GMQTLEE-------MIQMGHA---PDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +N L  G+ +++        M+ M H+   PD  T+NT I + C+  ++ +A +  + M 
Sbjct: 480 FNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMA 539

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G     P   TY I++ AL++  + +E   LL  M N    PD+ TY  V+  +  AG
Sbjct: 540 ENGCI---PNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAG 594

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K+EEA   L  M + G  PD +TY      +C     D A+R+  R+ ++G  P    YN
Sbjct: 595 KMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYN 654

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL-FDCSKVEEACFLLEEVVN 440
            ++  + +    D A + +  M   GC  D  TY ++++ L ++C  ++EA  LL  + +
Sbjct: 655 DILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYEC-LLDEAKQLLVNLCS 713

Query: 441 KGL 443
            G+
Sbjct: 714 LGV 716



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 16/289 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           + E    K  P+    N ++ +LC+ GLVD A  +   + ++   P+  TY+ +      
Sbjct: 290 FAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCD 349

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ L  +   G  PD   Y T +   C       A +L   M         P 
Sbjct: 350 VGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDC---PPD 406

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I +L Q   ++    ++  M  +GC PD+ TY  +++G+C    +++A + L 
Sbjct: 407 EVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLS 466

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            + + G  PDIVT+N  LK LC     ++A +L   M+   C P   T+N +I+   + G
Sbjct: 467 NLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKG 526

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
               A ET   M + GC  +  TY +++D L    K +EA  LL  + N
Sbjct: 527 LLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTN 575



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 9/238 (3%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N  I   C    V +A  +F  +       +S T  TY  M+    +  R+E+   L+  
Sbjct: 102 NILIKRLCSGGRVADAERVFATLG------ASATVVTYNTMVNGYCRAGRIEDARRLISG 155

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M      PD  T+  ++  +C+ G+V +A    ++M ++G  P +VTY+  L   C    
Sbjct: 156 MPFP---PDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASG 212

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             +A+ L   M   GC P + TYN+LI+     G+ D A     ++   GC  D  TY  
Sbjct: 213 YRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTP 272

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++  L    + +E   L  E+ +         F++ +  L   G +    K+ DHM +
Sbjct: 273 VLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSE 330


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 152/323 (47%), Gaps = 15/323 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y + I+V   P++  ++++++A CK G VD A    K+++N  V+PN  TY+ L      
Sbjct: 214 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVS 273

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L+ M + G + +  TY   I  +CK   + EA  +   M+ + + +  P 
Sbjct: 274 LGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV--PD 331

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            + Y ++I    +  ++++   LL  M+  G   ++     ++ G C  G++ EA   + 
Sbjct: 332 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVIT 391

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M +    PD  +YN  L   C   +  EA  L  +M++ G  P+V TYN L+     +G
Sbjct: 392 RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG 451

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D A + WH M KRG A D   Y  ++DGLF     E A  L ++++ +G       F+
Sbjct: 452 AFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFN 511

Query: 452 SYLMQLSVIGDLGAIHKLSDHMR 474
           + +  L  +G +    ++ D M+
Sbjct: 512 TMISGLCKMGKMVEAEEIFDKMK 534



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 153/325 (47%), Gaps = 21/325 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPN--------ANTYNILGMQT---- 221
           P I     L+D  CK G++D A  +  +  +N +  N        +  Y +  +      
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++M+  G  PD+  +  +   +   + + ++ D          T   P    Y I I  
Sbjct: 670 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD------ESCKTFLLPNNIVYNIAIAG 723

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  ++++       +   G +PD  TY  ++ G   AG V+EA++  +EM  +G  P+
Sbjct: 724 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTYN  +  LC ++N D A RL+ ++ + G +P+V TYN LI  Y ++G  D AF+   
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 843

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M + G +  V TY  +I+GL     +E +  LL +++  G+     ++ + +      G
Sbjct: 844 KMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSG 903

Query: 462 DLGAIHKLSD--HMRKFYNPVIARR 484
           ++  IHKL D  H+R      I+ +
Sbjct: 904 EMQKIHKLYDMMHIRCLSTTAISHK 928



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 16/291 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------- 217
           T  +    +P+  + N LLD  C+ G    A  +C K ++  ++P   TYN L       
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +Q    M++ G APD   Y+T +D   K      A+ L++ +  +G T S  T 
Sbjct: 451 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 510

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T   MI  L +  +M E   +   M + GC PD  TY+ +++G C A  V +A+K    
Sbjct: 511 NT---MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   P I  YN  +  L  ++   E   L   M   G  P++ TY  LI  + + G 
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D AF ++ EM + G + ++     M+ GL+   +++EA  L++++V+ G 
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 678



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 20/284 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET---------------ICKRVKNKVKPNANTYNILGM 219
           P+  A  +L+D  C+ G +D A                 IC  + N        +   G+
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            T   M+     PD+++YNT +D +C+    +EA +L + M  +G     PT  TY  ++
Sbjct: 390 IT--RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGI---EPTVLTYNTLL 444

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +    ++   +   M+  G  PD   Y  +L+G+      E A    +++  +G+ 
Sbjct: 445 KGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFT 504

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
              +T+N  +  LC      EA  ++ +M ++GC P   TY  LI  Y +      AF+ 
Sbjct: 505 KSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKV 564

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              M++   +  ++ Y  +I GLF   ++ E   LL E+  +GL
Sbjct: 565 KGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGL 608



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SPT   + +++   V+    +    +  +M   G +P + +   +L  +   G+   A+ 
Sbjct: 155 SPTV--FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHY 212

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M   G  PD+   +  +   C +   DEA     +M  +G  P++ TY+ LI+ Y 
Sbjct: 213 VYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYV 272

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            LG+ + A      M ++G +++V TY ++I G     K++EA
Sbjct: 273 SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 94/215 (43%), Gaps = 18/215 (8%)

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
           T +   F+F+  + +    P  K+Y  ++  L +    +E  + L  ++      D+  +
Sbjct: 83  TASLGFFQFVSKQQNF--RPNVKSYCKLVHILSRGRMYDETRAYLNQLV------DLCKF 134

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
           K+   G  +  ++   Y+         + P +  ++  LKV  +      AL ++  M +
Sbjct: 135 KD--RGNVIWDELVGVYREF------AFSPTV--FDMILKVYVEKGLTKNALYVFDNMGK 184

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  PS+++ N L++   + GE   A   + +M + G   DV    +M++      KV+E
Sbjct: 185 CGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDE 244

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           A   ++++ N G++     + S +     +GD+ A
Sbjct: 245 AAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEA 279


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 176/400 (44%), Gaps = 58/400 (14%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA--G 106
           SDV+ +  AI+ +       E AL      L  ++V  VLQ  + +  ++  FF W    
Sbjct: 3   SDVSGIV-AILTSVGDRPEAEAALAKYSRNLVPNTVGRVLQVIK-DVDVSLFFFRWVTRS 60

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           H+    H     N ++  L   +   + +++         R+            +L Q+ 
Sbjct: 61  HRGESIHNNFTCNCLLRTLVKARRHHQAYQIF--------RDE-----------LLGQHC 101

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           +   +         N L+   CK G ++ A                       Q L EM 
Sbjct: 102 DTNHI-------TYNTLIGGFCKAGDMERA----------------------FQLLAEMK 132

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + GH+PD  T+++ +   C    ++ A   F     + S   +P +  + I++  L + +
Sbjct: 133 ERGHSPDVVTHSSIVQALCNTGNLSRAMQYF-----RESVECAPDSVLFNILVHGLCKAN 187

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ E   ++  M   G +PDV TY  +++G+C + ++EEA + LE M  +   P++VTYN
Sbjct: 188 QLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYN 247

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       A +L  RMI+ G  P V T+N LIS + +  + D A E  H M K 
Sbjct: 248 TLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKG 307

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            CA ++ TY V+I GL D  +  EAC LL E+  +G+ LP
Sbjct: 308 LCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGI-LP 346



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P++   N L+D LCK   ++ A  + +  VK KV+PN  TYN L              Q 
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +E MIQ G  PD  T+N+ I  FC+   + +A ++   M+ KG  + +P   TY ++I  
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK-KG--LCAPNLVTYNVLISG 322

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R  E   LL  M   G LPD+ TY  ++   C   ++E+A++    M  +G  PD
Sbjct: 323 LCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPD 382

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            ++Y      L  ++  DEA  L   M + G  P++ T+N L+         D A     
Sbjct: 383 GISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLA 442

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            M + GC     TY V++ GL    +V++A  +L  +V++G++
Sbjct: 443 VMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQ 485



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 16/278 (5%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------ 217
           V+  P+    N+L+  LCK   +  A  + + +  + + P+  TYN L            
Sbjct: 167 VECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEE 226

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             Q LE M++    P+  TYNT I  +CK      A  L E M   G+    P   T+  
Sbjct: 227 ARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGT---HPDVVTFNS 283

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I    Q  ++++   +L  M    C P++ TY  ++ G+C AG+  EA + L EM  +G
Sbjct: 284 LISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRG 343

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PDI+TYN  + + C N   ++A ++   M+E G  P   +Y  L     +    D AF
Sbjct: 344 ILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAF 403

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
                M   G   ++ T+  +++GL    +++EA  LL
Sbjct: 404 ALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLL 441



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 278 MIVALVQNDRMEECFSLL-GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++  LV+  R  + + +    ++   C  +  TY  ++ G C AG +E A++ L EM  +
Sbjct: 75  LLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKER 134

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+ PD+VT++  ++ LC+  N   A++ +   +E  C P    +N+L+    +  +   A
Sbjct: 135 GHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKANQLSEA 192

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            +   EM +RG   DV TY  +IDGL    ++EEA  LLE +V + ++     +++ +  
Sbjct: 193 RQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYG 252

Query: 457 LSVIGDLGAIHKLSDHM 473
               G  G  H+L + M
Sbjct: 253 YCKTGCTGLAHQLIERM 269



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 137/324 (42%), Gaps = 66/324 (20%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM---------ILKQYT 166
           + YN +ID L  +    +  +L+ +M+    R N   V  + L+          +  Q  
Sbjct: 209 VTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPN--LVTYNTLIYGYCKTGCTGLAHQLI 266

Query: 167 EK-IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------- 217
           E+ I+  T P++   N L+   C+   +D A  +   +K  +  PN  TYN+L       
Sbjct: 267 ERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDA 326

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  + L EM   G  PD  TYN+ I  FC+   + +A  +   M  +G     P  
Sbjct: 327 GRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVI---PDG 383

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV------------------------- 307
            +Y  + VAL++++R +E F+LL +M ++G +P++                         
Sbjct: 384 ISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAV 443

Query: 308 ----------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
                     STY+ ++ G+C AG+V++A + L  M ++G  P + +    +  L     
Sbjct: 444 MRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGK 503

Query: 358 GDEALRLYGRMIEV---GCWPSVQ 378
            D AL  + +++      C PS Q
Sbjct: 504 QDLALHYFDQVVAAESKACDPSYQ 527


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 167/392 (42%), Gaps = 56/392 (14%)

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161
           F WAG Q  Y H    Y+++ID L +    AK+F+++  +L  +K     F   + L + 
Sbjct: 89  FQWAGSQKGYCHTFDVYHVLIDKLGA----AKEFKVIDKLLLQIKEEGIAFR--ESLFIC 142

Query: 162 LKQYTEKIKVKTQPEINALNLLLDA----LCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
           + +Y  +  +  Q    A  +LLD      C+     Y   +       +  +AN  ++ 
Sbjct: 143 IMKYYGRANLPGQ----ATRMLLDMKGVYCCEPTFKSYNVVL------DILVSANCPSV- 191

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
                 EM+  G  P  +T+   +   C    V  A  L   M   G     P +  Y  
Sbjct: 192 AANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCV---PNSVVYQT 248

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I AL + DR+ E   LL  M   GCLPDV T+ +V+ G+C   ++ E  K ++ M  +G
Sbjct: 249 LIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRG 308

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEA--------------------------------LRLY 365
           + P+ +TY   +  LC     DEA                                  LY
Sbjct: 309 FTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLY 368

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            +MI+ GC P V T+N LI    + G    A +  ++M   GC  ++ TY  ++DG    
Sbjct: 369 DKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKK 428

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +++EEA ++L E+  KG +L    ++  L  L
Sbjct: 429 NQLEEAGYVLNEMSAKGFELNIMGYNVLLRAL 460



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 139/324 (42%), Gaps = 31/324 (9%)

Query: 149 NKVFVPVDVLLMILKQ---------------YTEKIKVKTQPEINALNLLLDALCKCGLV 193
           NKV  P DV   IL                 Y + IK   +P++   N L+  LCK GL+
Sbjct: 337 NKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLM 396

Query: 194 DYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
             A + +     N   PN  TY  L                L EM   G   +   YN  
Sbjct: 397 GSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVL 456

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +   CK   V +A D+   M  KG     P   T+  +I  L + DR E+  +L   M+ 
Sbjct: 457 LRALCKNGKVPKALDMLGEMSDKGC---KPDIFTFNTLIFGLCKVDRKEDALALYRDMLL 513

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G + +  TY  ++      G ++EA K + +M  +G P D +TYN  +K  C     ++
Sbjct: 514 DGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEK 573

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           AL L+  M+     PS  + N+LI+    +G+   A E   +M  RG A DV TY  +I+
Sbjct: 574 ALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLIN 633

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           GL     + EA  L  ++  +G++
Sbjct: 634 GLCKMGNIREAFNLFNKLQAEGIQ 657



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 144/308 (46%), Gaps = 18/308 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETIC--KRVKNKVKPNANTYNIL---------- 217
           KV T  +++   +L++   K G +D A      K +KN  +P+  T+N L          
Sbjct: 338 KVPTPNDVH-FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLM 396

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  + +M   G  P+  TY T +D FCK   + EA  +   M  KG  ++      Y
Sbjct: 397 GSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELN---IMGY 453

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            +++ AL +N ++ +   +LG M + GC PD+ T+  ++ G+C   + E+A     +M  
Sbjct: 454 NVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLL 513

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G   + VTYN  +          EAL+L   M+  GC     TYN LI  + +LG  + 
Sbjct: 514 DGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEK 573

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A   + EM ++       +  ++I+GL    KV  A  LL +++++GL      ++S + 
Sbjct: 574 ALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLIN 633

Query: 456 QLSVIGDL 463
            L  +G++
Sbjct: 634 GLCKMGNI 641



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLE 223
           I   N+LL ALCK G V  A  +   + +K  KP+  T+N L             +    
Sbjct: 450 IMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYR 509

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M+  G   +  TYNT I  F +   + EA  L   M  +G  +   T   Y  +I A  
Sbjct: 510 DMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEIT---YNGLIKAFC 566

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +    E+   L   M+    +P   +   ++ G+C  GKV  A + L +M ++G  PD+V
Sbjct: 567 KLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVV 626

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           TYN  +  LC   N  EA  L+ ++   G  P   TYN LI  +   G  D A+
Sbjct: 627 TYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAY 680



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 118/267 (44%), Gaps = 31/267 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN----KVKPNANTYNIL------------ 217
           +P+I   N L+  LCK   VD  E      ++     V  N  TYN L            
Sbjct: 482 KPDIFTFNTLIFGLCK---VDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQE 538

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ + +M+  G   D  TYN  I  FCK     +A  LF+ M  K      P+  +  +
Sbjct: 539 ALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLV---PSNISCNL 595

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L +  ++     LL  MI+ G  PDV TY  ++ G+C  G + EA+    ++  +G
Sbjct: 596 LINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEG 655

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEPDGA 396
             PD +TYN  +   C     D+A  L  R +E    P+  T+ +L+S +  E+G+ +G 
Sbjct: 656 IQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKEIGKENGI 715

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLF 423
                     G A+ + + C+ +  +F
Sbjct: 716 --------SFGTAKVIPSICIQVQNIF 734



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 34/211 (16%)

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNN--KVFVPVDVLLM 160
           D      + YN +I          +  +LV  ML      D +  N   K F  +     
Sbjct: 514 DGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEK 573

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
            L  + E ++    P   + NLL++ LC+ G       +C                  ++
Sbjct: 574 ALGLFDEMVRKDLVPSNISCNLLINGLCRVG------KVCN----------------ALE 611

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +MI  G APD  TYN+ I+  CK   + EA +LF  ++ +G     P A TY  +I 
Sbjct: 612 LLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEG---IQPDAITYNTLIC 668

Query: 281 ALVQNDRMEECFSLLGHMINSGCLP-DVSTY 310
              +    ++ + LL   + +  +P DV+ Y
Sbjct: 669 WHCRAGMFDDAYLLLLRGVENAFIPNDVTWY 699



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P   +YN  L +L        A  ++  M+  G  P+V T+ +++     + E D A   
Sbjct: 171 PTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             +M K GC  +   Y  +I  L    +V EA  LLEE+   G       F+  +  L  
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290

Query: 460 IGDLGAIHKLSDHM 473
           +  +    KL D M
Sbjct: 291 LNRIHEGAKLVDRM 304


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 174/392 (44%), Gaps = 45/392 (11%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           + EKAL+ L + +    V  +L+    E  +  +FF WAG + N+ H+   Y  +I  L 
Sbjct: 79  DAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLE 137

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
             +   + +R +  ++    RN  V V   VL  ++K                      A
Sbjct: 138 EARLYGEMYRTIQEVV----RNTYVSVSPAVLSELVK----------------------A 171

Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMGHA-P 232
           L +  +V  A ++  + K  K KP ++TYN + +  ++E            M   G   P
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  TY+  I ++ K      A  LF+ M+        PT K Y  ++    +  ++E+  
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMK---DNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            L   M  +GC P V TY E+++G+  AG+V+EAY F ++M   G  PD+V  N  + +L
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRGCAQD 411
                 +E   ++  M    C P+V +YN +I   FE         +W + M     +  
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 409 EFTYSILIDGYCKTNRVEKALLLLEEMDEKGF 440



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 17/262 (6%)

Query: 175 PEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           P + + N ++ AL   K  + + +    K   + V P+  TY+IL             + 
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALL 430

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LEEM + G  P    Y + I+   KA+    A +LF+ ++     +SS   + YA+MI 
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSS---RVYAVMIK 487

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++ E   L   M N G  PDV  Y  ++ GM  AG + EA   L +M   G   
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI ++N  L           A+ ++  +   G  P   TYN L+  +   G  + A    
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMM 607

Query: 401 HEMDKRGCAQDVDTYCVMIDGL 422
            EM  +G   D  TY  ++D +
Sbjct: 608 REMKDKGFEYDAITYSSILDAV 629



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 17/304 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLE 223
           Y + ++    P++  LN L++ L K G V+    +   +   +  P   +YN +     E
Sbjct: 326 YKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFE 385

Query: 224 EMIQMGH-------------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
               +               +P  FTY+  ID +CK   V +A  L E M  KG     P
Sbjct: 386 SKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF---PP 442

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y  +I AL +  R E    L   +  +        Y  +++     GK+ EA    
Sbjct: 443 CPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLF 502

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM N+G  PD+  YN  +  +      +EA  L  +M E GC   + ++N++++ +   
Sbjct: 503 NEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFART 562

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G P  A E +  +   G   D  TY  ++         EEA  ++ E+ +KG +     +
Sbjct: 563 GVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622

Query: 451 DSYL 454
            S L
Sbjct: 623 SSIL 626



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 233 DNFTYNTAIDTFCKARMVTEA-ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           D  TY T I    +AR+  E    + E +R   +T  S +    + ++ AL +   + + 
Sbjct: 125 DCSTYMTLIRCLEEARLYGEMYRTIQEVVR---NTYVSVSPAVLSELVKALGRAKMVSKA 181

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLK 350
            S+        C P  STY  V+  +   G+ E+ ++   EM N+G   PD +TY+  + 
Sbjct: 182 LSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                   D A+RL+  M +    P+ + Y  L+ +YF++G+ + A + + EM + GC+ 
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
            V TY  +I GL    +V+EA    ++++  GL  P   F + LM  +++G +G + +L+
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGL-TPDVVFLNNLM--NILGKVGRVEELT 358

Query: 471 D 471
           +
Sbjct: 359 N 359


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 145/291 (49%), Gaps = 15/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL--GM-- 219
           + E +     PE+     +++  CK G +D A ++ +R+K   + P+ + Y+ L  G+  
Sbjct: 107 FEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCK 166

Query: 220 ----QTLEEMIQM--GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               +   E+ +M  G   D   Y + I   CKA  + EA  +   M   G    +P   
Sbjct: 167 HDRHEEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGC---APDPV 223

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y ++I +L +++R+ E   L+   +   C+P V     +++G+C + +VEEA   LE M
Sbjct: 224 SYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERM 283

Query: 334 GNKG-YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
              G   P +VTY+  +  LC     D+A  +  +M   GC P V TY  +I  + ++G 
Sbjct: 284 LEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGR 343

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D A E +  M +RGCA DV  Y ++I G    +KV+EA  ++EE+  +G+
Sbjct: 344 LDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 131/285 (45%), Gaps = 18/285 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNI------------LGMQT 221
           P I     L+  LC+    + A  I  + +  KVKP+A  Y +            L    
Sbjct: 12  PTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 71

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+M+Q G  PD  TY   + +  KA    +   +FE M +KG    SP   TYA ++  
Sbjct: 72  FEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGH---SPELVTYATVVNG 128

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  R+++  SL+  +  +G  P  S Y  +++G+C   + EEA +  E     G   D
Sbjct: 129 YCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAA--GDVQD 186

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++ Y  F+  LC     DEA  ++ +MIE GC P   +YN++I    +      A E   
Sbjct: 187 VIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMD 246

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +  +R C   V    V++DGL    +VEEAC +LE ++  G + P
Sbjct: 247 QAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAP 291



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 19/295 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--- 217
           L+ + + I +K +P+     +++  LCK   +D A +  ++ V++   P+  TY +L   
Sbjct: 34  LQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHS 93

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G Q  EEM+  GH+P+  TY T ++ +CKA  + +A  L   MR    T  
Sbjct: 94  LFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSL---MRRLKGTGR 150

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP+   Y+ +I  L ++DR EE   L    + +G + DV  Y   + G+C AGK++EA  
Sbjct: 151 SPSGSLYSTLIDGLCKHDRHEEARELF--EMAAGDVQDVIVYTSFISGLCKAGKLDEAKA 208

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M   G  PD V+YN  +  LC +    EA  L  + +E  C P V    +L+    
Sbjct: 209 VHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLC 268

Query: 389 ELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +    + A      M + G  A  V TY  +IDGL    ++++A  +L+++   G
Sbjct: 269 KSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAG 323



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 5/210 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM   G  P   T+ + I   C+     +A  +F  M         P A  Y ++I  
Sbjct: 2   LGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMI---DMKVKPDAFLYTVVIGH 58

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + ++++   S    M+ SGCLPD  TY  ++  +  A K E+ ++  EEM +KG+ P+
Sbjct: 59  LCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPE 118

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +   C     D+AL L  R+   G  PS   Y+ LI    +    + A E + 
Sbjct: 119 LVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF- 177

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           EM   G  QDV  Y   I GL    K++EA
Sbjct: 178 EM-AAGDVQDVIVYTSFISGLCKAGKLDEA 206



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%)

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LLG M  +G  P + T+  ++  +C      +A +   +M +    PD   Y   +  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                D A   + +M++ GC P   TY +L+   F+  + +   + + EM  +G + ++ 
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           TY  +++G     ++++A  L+  +   G
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRRLKGTG 149


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 174/392 (44%), Gaps = 45/392 (11%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           + EKAL+ L + +    V  +L+    E  +  +FF WAG + N+ H+   Y  +I  L 
Sbjct: 79  DAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLE 137

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
             +   + +R +  ++    RN  V V   VL  ++K                      A
Sbjct: 138 EARLYGEMYRTIQEVV----RNTYVSVSPAVLSELVK----------------------A 171

Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMGHA-P 232
           L +  +V  A ++  + K  K KP ++TYN + +  ++E            M   G   P
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  TY+  I ++ K      A  LF+ M+        PT K Y  ++    +  ++E+  
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMK---DNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            L   M  +GC P V TY E+++G+  AG+V+EAY F ++M   G  PD+V  N  + +L
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRGCAQD 411
                 +E   ++  M    C P+V +YN +I   FE         +W + M     +  
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             TY ++IDG    ++VE+A  LLEE+  KG 
Sbjct: 409 EFTYSILIDGYCKTNRVEKALLLLEEMDEKGF 440



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 17/262 (6%)

Query: 175 PEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           P + + N ++ AL   K  + + +    K   + V P+  TY+IL             + 
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALL 430

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LEEM + G  P    Y + I+   KA+    A +LF+ ++     +SS   + YA+MI 
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSS---RVYAVMIK 487

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++ E   L   M N G  PDV  Y  ++ GM  AG + EA   L +M   G   
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI ++N  L           A+ ++  +   G  P   TYN L+  +   G  + A    
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMM 607

Query: 401 HEMDKRGCAQDVDTYCVMIDGL 422
            EM  +G   D  TY  ++D +
Sbjct: 608 REMKDKGFEYDAITYSSILDAV 629



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 17/304 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLE 223
           Y + ++    P++  LN L++ L K G V+    +   +   +  P   +YN +     E
Sbjct: 326 YKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFE 385

Query: 224 EMIQMGH-------------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
               +               +P  FTY+  ID +CK   V +A  L E M  KG     P
Sbjct: 386 SKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF---PP 442

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y  +I AL +  R E    L   +  +        Y  +++     GK+ EA    
Sbjct: 443 CPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLF 502

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM N+G  PD+  YN  +  +      +EA  L  +M E GC   + ++N++++ +   
Sbjct: 503 NEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFART 562

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G P  A E +  +   G   D  TY  ++         EEA  ++ E+ +KG +     +
Sbjct: 563 GVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622

Query: 451 DSYL 454
            S L
Sbjct: 623 SSIL 626


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 197/455 (43%), Gaps = 45/455 (9%)

Query: 33  VPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAY--DNMEKALDSLGVPLTTDSVVGVLQR 90
           VP   C    +++ S +D++ +   +++N++     ++E ALD  G+  + + V  +  R
Sbjct: 52  VPDSTCTPPQQNTVSKTDLSTISN-LLENTDVVPGSSLESALDETGIEPSVELVHALFDR 110

Query: 91  FQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNK 150
                 +    F WA  +  +   P  ++ +++ L     KA++F +  S++    R+++
Sbjct: 111 LSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLC----KAREFEIAWSLVFDRVRSDE 166

Query: 151 V--FVPVDVLLMILKQYTEKIKV-----------------KTQPEINALNLLLDALCKCG 191
               V  D  ++++++Y     V                 K+  E+  L +LLDALCK G
Sbjct: 167 GSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEG 226

Query: 192 LVDYAETICKRVKNKVK----PNANTYNIL------------GMQTLEEMIQMGHAPDNF 235
            V  A    +R+   +     P+   +NIL              +  EEM  M   P   
Sbjct: 227 HVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVV 286

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY T I+ +C+ R V  A ++ E M+     I+      +  +I  L +  R+ E   ++
Sbjct: 287 TYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEIN---FMVFNPIIDGLGEAGRLSEALGMM 343

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
                    P + TY  +++  C AG +  A K L+ M  +G  P   TYN F K    +
Sbjct: 344 ERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKH 403

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              +E + LY ++IE G  P   TY++++ M  E G+   A +   EM  RG   D+ T 
Sbjct: 404 NKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTT 463

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
            ++I  L     +EEA    +  V +G+   Y  F
Sbjct: 464 TMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITF 498



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           ++ P I   N L+   CK G +  A  I K +  + V P   TYN              G
Sbjct: 350 ESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEG 409

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M    ++I+ GH+PD  TY+  +   C+   ++ A  + + M+ +G     P   T  ++
Sbjct: 410 MNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGI---DPDLLTTTML 466

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           I  L + + +EE F    + +  G +P   T+K +  G+   G  + A + 
Sbjct: 467 IHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRL 517



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 123/293 (41%), Gaps = 30/293 (10%)

Query: 198 TICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           TI   ++N  V P ++  + L    +E  +++ HA          D    + M+  +  +
Sbjct: 72  TISNLLENTDVVPGSSLESALDETGIEPSVELVHA--------LFDRLSSSPMLLHS--V 121

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---GCLPDVSTYKEV 313
           F++   K     SP+   +  ++ +L +    E  +SL+   + S     L    T+  +
Sbjct: 122 FKWAEMKPGFTLSPS--LFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVL 179

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPP------DIVTYNCFLKVLCDNKNGDEA---LRL 364
           +     AG V++A +  E    + Y P      ++      L  LC   +  EA   L  
Sbjct: 180 IRRYARAGMVQQAIRAFE--FARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLER 237

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            G  ++    PSV+ +N+L++ +F   +   A + W EM        V TY  +I+G   
Sbjct: 238 IGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCR 297

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
             +V+ A  +LEE+    +++ +  F+  +  L   G+ G + +    M +F+
Sbjct: 298 MRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGL---GEAGRLSEALGMMERFF 347


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 26/331 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQT 221
           P++    +L+D   K G++  A   + + V++  +P   TY  L              + 
Sbjct: 522 PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANEL 581

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR-------------TKGSTIS 268
            E MI  G  P+  TY   ID +CK+  + +A  ++  MR              K +   
Sbjct: 582 FELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE 641

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  ++  L +  ++++   LL  M   GC P+   Y  +++G C A K++EA +
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M   GY P++ TY+  +  L  +K  D  L++  +M+E  C P++  Y  +I    
Sbjct: 702 VFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++ + D A++    M+++GC  +V TY  MIDG     KV++   L  E+ +KG    + 
Sbjct: 762 KVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +   +      G L   + L + M++ Y P
Sbjct: 822 TYTVLINHCCATGHLDEAYALLEEMKQTYWP 852



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 123/276 (44%), Gaps = 32/276 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR---------------VKNKV--KPNANTYNIL 217
           P +     L+D  CK G ++ A  I  R               +KN V  KPN  TY  L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           LE M   G  P+   Y+  ID FCKA  + EA ++F  M   G 
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGY 711

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
              +P   TY+ +I  L ++ R++    +L  M+ + C P++  Y E+++G+    K +E
Sbjct: 712 ---NPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDE 768

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           AYK +  M  KG  P++VTY   +         D+ L L+  M   GC P+  TY +LI+
Sbjct: 769 AYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLIN 828

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
                G  D A+    EM +    + V +YC +I+G
Sbjct: 829 HCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEG 864



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 154/419 (36%), Gaps = 88/419 (21%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           L  D VV +L   +  E +  +FF+WAG Q  Y H P  Y  ++D+     Y        
Sbjct: 136 LNPDLVVEILSFLKSPE-LCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDR------ 188

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
                         VP + L  I     E +          LN+L+   C+ GL + A  
Sbjct: 189 --------------VPEEFLREIRGDDKEVLG-------KLLNVLIRKCCRNGLWNVALE 227

Query: 199 ICKRVKN-KVKPNANTYNILGMQTLE------------EMIQMGHAPDNFTYNTAIDTFC 245
              R+K+   KP   TYN L    L             EM ++G + D FT        C
Sbjct: 228 ELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALC 287

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           K     EA  L E    K   +  P    Y  MI  L +    EE    L  M ++ C+P
Sbjct: 288 KVGKWREALSLIE----KEDFV--PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIP 341

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V TY+ +L G     ++    + L  M  +G  P    +N  +   C + +   A +L 
Sbjct: 342 NVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLL 401

Query: 366 GRMIEVGCWPSVQTYNMLIS-----------MYFELGEP--------------------- 393
            +M +  C P    YN+LI            + FEL E                      
Sbjct: 402 KKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFA 461

Query: 394 ---------DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                    + A++  HEM   G   D  TY  +I  L + S+VE A FL +E+   G+
Sbjct: 462 RCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGV 520



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 137/344 (39%), Gaps = 45/344 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-----------GMQTL 222
           P     N L+ A CK     YA  + K++ K + KP    YNIL           G  T 
Sbjct: 376 PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTF 435

Query: 223 E-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           E       EM+  G   +     +     C      +A  +   M   G     P   TY
Sbjct: 436 ELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV---PDTSTY 492

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I  L    R+E  F L   M  +G +PDV TY  +++    AG +++A+ +L+EM  
Sbjct: 493 SEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P +VTY   +      K    A  L+  MI  GC+P+V TY  LI  Y + G  + 
Sbjct: 553 DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEK 612

Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
           A + +  M       DVD                TY  ++DGL    KV++A  LLE + 
Sbjct: 613 ACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMF 672

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLG----AIHKLSDHMRKFYNP 479
             G +     +D+ +        L       HK+ +H    YNP
Sbjct: 673 VDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHG---YNP 713



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 123/307 (40%), Gaps = 53/307 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK   +D A E   K V++   PN  TY+ L             ++
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLK 736

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   ID   K     EA  L   M  KG     P   TY  MI 
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGC---KPNVVTYTAMID 793

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++++C  L   M + GC P+  TY  ++   C  G ++EAY  LEEM    +P 
Sbjct: 794 GFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPK 853

Query: 341 DIVTYNC------------------------------FLKVLCDN--KNG--DEALRLYG 366
            + +Y C                                KVL DN  K G  + AL L+ 
Sbjct: 854 HVSSY-CKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHK 912

Query: 367 RMIEVGCWPSVQT--YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            +I      + +   Y  LI  +    +   AFE +++M + G   D+ T+  ++ GL  
Sbjct: 913 EVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIR 972

Query: 425 CSKVEEA 431
             + EEA
Sbjct: 973 VRRWEEA 979



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 19/205 (9%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +M+D   +  KV    D  L + ++   K      P      +L++  C  G +D A  +
Sbjct: 790 AMIDGFGKAGKV----DKCLELFREMGSK---GCAPNFVTYTVLINHCCATGHLDEAYAL 842

Query: 200 CKRVKNKVKP-NANTYN----------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
            + +K    P + ++Y           IL +  LEE+ + G AP    Y   ID F KA 
Sbjct: 843 LEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAG 902

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            +  A +L + + +   ++++     Y  +I +     ++   F L   MI  G +PD+ 
Sbjct: 903 RLEVALELHKEVISASMSMAA-KKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLG 961

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+  +L G+    + EEA +  + +
Sbjct: 962 TFVHLLMGLIRVRRWEEALQLSDSL 986



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 116/311 (37%), Gaps = 22/311 (7%)

Query: 178 NALNLLLDALCKC--GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI--------- 226
           N   L+LDA+  C  G  +    + ++ + K+ P+     IL      E+          
Sbjct: 105 NEAFLILDAVRNCDDGFGEKTHIVLRQFRQKLNPDL-VVEILSFLKSPELCVKFFLWAGR 163

Query: 227 QMGHAPDNFTYNTAIDTFCKARM--VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           Q+G+      Y   +D F +     V E     EF+R           K   ++I    +
Sbjct: 164 QIGYDHTPAVYIALLDVFERGSYDRVPE-----EFLREIRGDDKEVLGKLLNVLIRKCCR 218

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           N         LG + + G  P   TY  +++    A K++ A     EM   G   D  T
Sbjct: 219 NGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFT 278

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
              F + LC      EAL L  +   V   P+   YN +IS   E    + A +  + M 
Sbjct: 279 LGFFAQALCKVGKWREALSLIEKEDFV---PNTILYNKMISGLCEASFFEEAMDFLNRMR 335

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
              C  +V TY +++ G  +  ++     +L  ++ +G    Y  F+S +       D  
Sbjct: 336 STSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFS 395

Query: 465 AIHKLSDHMRK 475
             +KL   M K
Sbjct: 396 YAYKLLKKMEK 406


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 17/283 (6%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL------------GMQT 221
           +I   N++   L   G+V  A  + K+++N     P+  T+  L              + 
Sbjct: 367 QITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEI 426

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE+    G   D F+Y++ I+ FCK     +A ++++ M   G     P +  Y  +I  
Sbjct: 427 LEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGC---KPNSHVYNALING 483

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++ +   +   M ++GC P + TY  +++G+C A K +EA    +EM  +G+ PD
Sbjct: 484 FCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD 543

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I TY   ++ LC +K  D ALR++  +++ G    V  +N+LI      G+ D AF  + 
Sbjct: 544 IRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYL 603

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM ++ C+ ++ TY  ++DG ++   +++A  L   +++ GLK
Sbjct: 604 EMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLK 646



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  + M++ G  P++  YN  I+ FC+   + +A  ++  M + G     PT  TY  +I
Sbjct: 460 EVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCC---PTIITYNTLI 516

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L + ++ +E  SL   M+  G  PD+ TY  ++ G+C   KV+ A +  +E+ + G  
Sbjct: 517 DGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQ 576

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            D++ +N  +  LC     DEA  +Y  M E  C P++ TYN L+  ++E+G  D A   
Sbjct: 577 VDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASL 636

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           W  +   G   D+ TY   I GL  C++  E   LL EV+  G+
Sbjct: 637 WTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGI 680



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 138/300 (46%), Gaps = 20/300 (6%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GM 219
             P +    ++LD LCK G    A  +  R+  N  + +  TY IL              
Sbjct: 260 ASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAA 319

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-STISSPTAKTYAIM 278
           +   +M++ G   D   YN+ I  FC+     EA   ++F  + G S I   T  TY IM
Sbjct: 320 RVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEA---WKFWDSTGFSGIRQIT--TYNIM 374

Query: 279 IVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
              L+ +  + E   LL  + N + C PD  T+  ++ G+C  G    A++ LE+  N G
Sbjct: 375 TKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSG 434

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              D+ +Y+  +   C +    +A  +Y  M++ GC P+   YN LI+ +  + + + A 
Sbjct: 435 EELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAI 494

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + + EM   GC   + TY  +IDGL    K +EA  L +E++ +G K   R + S +  L
Sbjct: 495 KIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGL 554



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 22/285 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-----KVKPNANTYNIL----------- 217
            P + + N LLDA  +      A+     + +     ++ PN  TYNI+           
Sbjct: 116 NPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVD 175

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +     + + G APD  TY+T +    K   +  A DL + M   G       A  Y 
Sbjct: 176 RAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGV---QADAVCYN 232

Query: 277 IMIVALVQNDRMEECFSLLGHMI-NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            ++    +    E+   +   ++ + G  P+++TYK +L+G+C  G+ +EA +    M  
Sbjct: 233 ALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMA 292

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
             +  D VTY   +  LC + + D A R+Y  M++ G    V  YN LI  + E+G    
Sbjct: 293 NNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGE 352

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           A++ W      G  Q + TY +M  GL D   V EA  LL+++ N
Sbjct: 353 AWKFWDSTGFSGIRQ-ITTYNIMTKGLLDSGMVSEATELLKQLEN 396



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 4/247 (1%)

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK--GSTISSPTAKTYAIMIVALVQN 285
           +G  P   ++NT +D F +AR  ++A   F  +     G  I+ P  +TY I++ +L   
Sbjct: 113 LGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIA-PNLQTYNIILRSLCAR 171

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             ++   SL   +   G  PD  TY  ++ G+    +++ A   L+EM N G   D V Y
Sbjct: 172 GDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCY 231

Query: 346 NCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           N  L         ++A++++ +++ + G  P++ TY +++    +LG    A E W  M 
Sbjct: 232 NALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMM 291

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
                 D  TY ++I GL     V+ A  +  ++V  GL L    ++S +     +G  G
Sbjct: 292 ANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTG 351

Query: 465 AIHKLSD 471
              K  D
Sbjct: 352 EAWKFWD 358



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 51/257 (19%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           +++  CK G    A  + K  VK+  KPN++ YN L             ++   EM   G
Sbjct: 445 MINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNG 504

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P   TYNT ID  CKA    EA+ L + M  +G     P  +TYA +I  L ++ +++
Sbjct: 505 CCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGF---KPDIRTYASLIRGLCRDKKVD 561

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK------------- 336
               +   ++++G   DV  +  ++ G+C AGKV+EA+    EM  K             
Sbjct: 562 VALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLM 621

Query: 337 ----------------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                                 G  PDIVTYN  +K LC      E + L   ++  G  
Sbjct: 622 DGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIM 681

Query: 375 PSVQTYNMLISMYFELG 391
           P+V T+++L+    + G
Sbjct: 682 PTVITWSILVRAVIKYG 698



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 135 FRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194
            R   S++  + R+ KV    DV L I   + E +    Q ++   N+L+  LC  G VD
Sbjct: 544 IRTYASLIRGLCRDKKV----DVALRI---WDEILDAGLQVDVMVHNILIHGLCSAGKVD 596

Query: 195 YAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAI 241
            A  I   +K K   PN  TYN L                   ++  G  PD  TYNT I
Sbjct: 597 EAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRI 656

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
              C      E   L   +   G     PT  T++I++ A+++
Sbjct: 657 KGLCSCNRTPEGVLLLNEVLATGIM---PTVITWSILVRAVIK 696


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 158/330 (47%), Gaps = 17/330 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------Q 220
           +P +   N ++   C  G V+ A  I   +K + VKP++ TY   I GM           
Sbjct: 223 KPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASG 282

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M ++G  P   TYNT ID +C    +  A D  + M  +G     PT  TY ++I 
Sbjct: 283 MLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLM---PTVSTYNMLIH 339

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL  + +M+E   ++  M   G +PD  TY  ++ G C  G V++A+   +EM +KG  P
Sbjct: 340 ALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQP 399

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             VTY   + VL       +A  L+ +++  G +P +  +N LI  +   G  D AF   
Sbjct: 400 TRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAML 459

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EMD+     D  T+  ++ G     KVE A  L+EE+ ++G+K  +  +++ +   S  
Sbjct: 460 KEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKR 519

Query: 461 GDLGAIHKLSDHMRKF-YNPVIARRLALNQ 489
           GD+    ++ D M    +NP +    AL Q
Sbjct: 520 GDMKDAFRVRDEMLSIGFNPTLLTYNALIQ 549



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 20/311 (6%)

Query: 167 EKIK-VKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------- 217
           EK+K +  +P     N L+D  C  G ++ A +   K V+  + P  +TYN+L       
Sbjct: 285 EKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLD 344

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                    ++EM + G  PD+ TYN  I+ +C+   V +A  L + M +KG     PT 
Sbjct: 345 CKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGI---QPTR 401

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I  L +  RM++   L   ++  G  PD+  +  +++G C  G ++ A+  L+E
Sbjct: 402 VTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKE 461

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M      PD VT+N  ++  C     + A  L   M   G  P   +YN LIS Y + G+
Sbjct: 462 MDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGD 521

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
              AF    EM   G    + TY  +I GL    + + A  LL+E+++KG+       ++
Sbjct: 522 MKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGIT---PNDNT 578

Query: 453 YLMQLSVIGDL 463
           YL  +  IG++
Sbjct: 579 YLSLIEGIGNV 589



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 25/279 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           Y E  +++ +  +   N++++ LCK G +  A+                   +G+     
Sbjct: 179 YAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAK-----------------EFIGL----- 216

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M  +G  P+  TYNT I  +C    V  A  +F+ M+ +G     P + TY   I  + +
Sbjct: 217 MEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRG---VKPDSYTYGSFISGMCK 273

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++EE   +L  M   G  P   TY  +++G C  G +E A+ + ++M  +G  P + T
Sbjct: 274 EGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVST 333

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +  L  +   DEA  +   M E G  P   TYN+LI+ Y   G    AF    EM 
Sbjct: 334 YNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMI 393

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +G      TY  +I  L    ++++A  L E++V KG+
Sbjct: 394 SKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGI 432



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 11/219 (5%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEA----ADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           G  P     N  +  F K+    +A    A++F  MR K S +      T+ IMI  L +
Sbjct: 151 GVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFR-MRIKSSVV------TFNIMINVLCK 203

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++++    +G M   G  P+V TY  ++ G C  G+VE A    + M  +G  PD  T
Sbjct: 204 EGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYT 263

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y  F+  +C     +EA  +  +M E+G  P+  TYN LI  Y   G  + AF+   +M 
Sbjct: 264 YGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMV 323

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + G    V TY ++I  LF   K++EA  +++E+  KGL
Sbjct: 324 REGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGL 362



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y ++I A  +  R ++ F     M   G +P V    ++L     + + E+A+    EM 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
                  +VT+N  + VLC      +A    G M  +G  P+V TYN +I  Y   G  +
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           GA   +  M  RG   D  TY   I G+    K+EEA  +LE++   GL+
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLR 293



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%)

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++   C   + ++A++  + M  KG  P +   N  L +   +   ++A  LY  M 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
            +    SV T+N++I++  + G+   A E    M+  G   +V TY  +I G     +VE
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            A  + + +  +G+K     + S++  +   G L     + + M++ 
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEI 290


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 25/265 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E I     P +    +L+DALCK G V  A+                 N+L + T E   
Sbjct: 210 EMILKNINPNVYTYTILMDALCKEGKVKEAK-----------------NLLAVMTKE--- 249

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  P+  +YNT +D +C    V  A  +F  M  KG    +P   +Y IMI  L ++ 
Sbjct: 250 --GVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGV---NPNVYSYNIMIDRLCKSK 304

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R++E  +LL  +++   +P+  TY  +++G C  G++  A   L+EM ++G P D+VTY 
Sbjct: 305 RVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYT 364

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L  LC N+N D+A  L+ +M E G  P+  TY  LI    + G    A + +  +  +
Sbjct: 365 SLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVK 424

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC  +V TY VMI GL     ++EA
Sbjct: 425 GCRINVWTYNVMISGLCKEGMLDEA 449



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P++  LN+L++  C  G + ++ T+  ++ K   +PN  T N L             + 
Sbjct: 42  EPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLH 101

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++++  G   D  +Y T ++  CK   + E     + +R      + P    Y  +I 
Sbjct: 102 FHDKVVAQGFQMDQVSYATLLNGLCK---IGETRSALKLLRMIEDRSTRPNVVMYNTIID 158

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++  + E + L   M   G  P+V TY  ++ G CLAG++ EA+  L EM  K   P
Sbjct: 159 GLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINP 218

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY   +  LC      EA  L   M + G  P+V +YN L+  Y  +GE   A + +
Sbjct: 219 NVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMF 278

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           H M ++G   +V +Y +MID L    +V+EA  LL EV++K +
Sbjct: 279 HTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM 321



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           LL+ LCK G    A  + + ++++  +PN   YN +                  EM   G
Sbjct: 121 LLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY+T I  FC A  + EA  L   M  K     +P   TY I++ AL +  +++
Sbjct: 181 IFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNI---NPNVYTYTILMDALCKEGKVK 237

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +LL  M   G  P+V +Y  +++G CL G+V+ A +    M  KG  P++ +YN  +
Sbjct: 238 EAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMI 297

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC +K  DEA+ L   ++     P+  TY+ LI  + +LG    A +   EM  RG  
Sbjct: 298 DRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQP 357

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            DV TY  ++D L     +++A  L  ++  +G++
Sbjct: 358 ADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           ++++ + +   VK K  P A       +   ++M   G  PD FT N  I+ FC    +T
Sbjct: 10  IMEFNKIVGSLVKMKHYPTA-------ISLFKQMQVKGIEPDLFTLNILINCFCHLGQMT 62

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
            +  +   +   G     P   T   ++  L     +++       ++  G   D  +Y 
Sbjct: 63  FSFTVLGKILKLGY---QPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYA 119

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +L G+C  G+   A K L  + ++   P++V YN  +  LC +K  +EA  LY  M   
Sbjct: 120 TLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDAR 179

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G +P+V TY+ LI  +   G+   AF   +EM  +    +V TY +++D L    KV+EA
Sbjct: 180 GIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEA 239

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
             LL  +  +G+K     +++ +    +IG++    ++   M +K  NP
Sbjct: 240 KNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNP 288



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+ +   P    +N  + +  K +    A  LF+ M+ KG     P   T  I+I     
Sbjct: 1   MLLVRDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKG---IEPDLFTLNILINCFCH 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             +M   F++LG ++  G  P+  T   +++G+CL G+V+++  F +++  +G+  D V+
Sbjct: 58  LGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVS 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIE-VGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           Y   L  LC       AL+L  RMIE     P+V  YN +I    +    + A++ + EM
Sbjct: 118 YATLLNGLCKIGETRSALKLL-RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D RG   +V TY  +I G     ++ EA  LL E++ K +
Sbjct: 177 DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNI 216


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 36/384 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           M K L+ L   L    V  V+   Q +  +A  FF WAG QD Y+H    Y LMI  L+ 
Sbjct: 136 MGKQLERLKFKLNPGLVCDVVVN-QKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAG 194

Query: 128 TKYKAKQFRLVCSMLDYMKRNN--------KVFVPVDVLLMILKQYTEKIKVKTQPEINA 179
            +      +++ +M     R +        + F   + +   L+ + +       P  N 
Sbjct: 195 AQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNM 254

Query: 180 LNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN 238
            N +L+ L K G    A  +  ++   +++P+A T+ I                      
Sbjct: 255 YNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIF--------------------- 293

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
             + +F ++  +  AA+  + M   G     P   T+ ++I ALV++  ++E       M
Sbjct: 294 --VHSFNRSGRLDPAAEPIQEMIKSGI---DPGVHTFTVLIDALVKSGNIDEACKFFNGM 348

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
            N  C P+V TY  ++ G+  AG++EEA +   EM      PD + YN  +  L      
Sbjct: 349 KNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEA 408

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           D A  L+  M + G  P+++TYN++IS+  + G    A++ +H++ ++G   DV TY  +
Sbjct: 409 DMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTL 468

Query: 419 IDGLFDCSKVEEACFLLEEVVNKG 442
           ID L    ++++   +++E+V KG
Sbjct: 469 IDVLGKGGQMDKVLAIIKEMVEKG 492



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 150/327 (45%), Gaps = 22/327 (6%)

Query: 155  VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
            +D  L I  +  E   V   P+    N++++ L K   VD A  +   +KN+ + P+  T
Sbjct: 684  IDFALQIFNELQESSLV---PDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFT 740

Query: 214  YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
            Y  L                  +M + GH PD   Y + +D   K   ++ A  +F  M 
Sbjct: 741  YTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMA 800

Query: 262  TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             K      P   TY+ +I +L +  R+EE +    + I+ GC P+V  Y  +++     G
Sbjct: 801  KKRCV---PDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKG 857

Query: 322  KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
             V+ A +  EEM  +  PP+IVTYN  L  L      + A +L   M +VGC P + TYN
Sbjct: 858  MVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYN 917

Query: 382  MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +LI    ++G  D A   +  M ++G   DV T+  +I+ L    K+ EAC L + +  +
Sbjct: 918  ILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEE 977

Query: 442  GLKLPYRKFDSYLMQLSVIGDLGAIHK 468
            G         +Y + + ++G  G +H+
Sbjct: 978  GYN---PSVVTYNVLIDILGRAGKVHE 1001



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 177/379 (46%), Gaps = 32/379 (8%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP----VDVLLMILK 163
           ++N + + +AYN +ID L     KA +  + C +   MK  ++  VP     ++++ +L 
Sbjct: 385 ENNCSPDAIAYNTLIDGLG----KAGEADMACGLFKEMK--DRGLVPNLRTYNIMISVLG 438

Query: 164 QYTEKIK-------VKTQ---PEINALNLLLDALCKCGLVDYAETICKRVKNK-----VK 208
           +   + +       +K Q   P++   N L+D L K G +D    I K +  K     + 
Sbjct: 439 KAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIIS 498

Query: 209 PNANTYN---ILGMQTLEEMIQMG-HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
            ++N  +   I G     E   +G  +    TYNT +  F     V EA  L E M+ K 
Sbjct: 499 RDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMK-KH 557

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
             I  PT  TY  ++  L +  R++E  SLL  M   GC P V TY  ++       + E
Sbjct: 558 ECI--PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEE 615

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           E+    +EM  KG   D+ TY+  +  LC + + D+AL ++GRM E G  P +  Y  L+
Sbjct: 616 ESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLL 675

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           S   +  + D A + ++E+ +     D   Y +M++GL   ++V+EAC L++ + N+ + 
Sbjct: 676 SSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL 735

Query: 445 LPYRKFDSYLMQLSVIGDL 463
                + S L  L   G L
Sbjct: 736 PDLFTYTSLLDGLGKSGRL 754



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 190/414 (45%), Gaps = 44/414 (10%)

Query: 40   VFDE--SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGV-------PLTTDSVVGVLQR 90
            +FDE      V+DV+  Y  +I+     D++++ALD  G        PL  +    +L  
Sbjct: 620  LFDEMVRKGCVADVST-YSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKT-LLSS 677

Query: 91   FQFEEKIAFRFFMWAGHQDN-YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149
               +EKI F   ++   Q++    +   YN+M++ L     K+ +    C ++D MK  N
Sbjct: 678  LVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGL----VKSNRVDEACKLVDSMKNQN 733

Query: 150  ---KVFVPVDVLLMILKQ---------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197
                +F    +L  + K          +T+  +   +P++ A   L+D L K G + +A 
Sbjct: 734  ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHAL 793

Query: 198  TICKRV-KNKVKPNANTY----NILGMQT--------LEEMIQMGHAPDNFTYNTAIDTF 244
             I + + K +  P+  TY    + LG +          E  I  G  P+   Y++ ID+F
Sbjct: 794  IIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSF 853

Query: 245  CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
             K  MV  A +LFE M+ +      P   TY  ++  L +  R+     LL  M   GC+
Sbjct: 854  GKKGMVDRALELFEEMQRRQC---PPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCV 910

Query: 305  PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
            PD+ TY  +++G+   G V+EA  + + M  KG  PD++T+   ++ L       EA  L
Sbjct: 911  PDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACEL 970

Query: 365  YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
            +  M E G  PSV TYN+LI +    G+   A   +HEM  +GC  D  T  +M
Sbjct: 971  FDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 158/369 (42%), Gaps = 52/369 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L  + E ++     +++  +L+++ LCK   VD A  +  R+K + ++P    Y  L   
Sbjct: 618 LSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSS 677

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q   E+ +    PD F YN  ++   K+  V EA  L + M+ +     
Sbjct: 678 LVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL-- 735

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-------------------------- 302
            P   TY  ++  L ++ R+EE F++   M   G                          
Sbjct: 736 -PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALI 794

Query: 303 ---------CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
                    C+PDV TY  +++ +   G+VEEAY F E   +KG  P++  Y+  +    
Sbjct: 795 IFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFG 854

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                D AL L+  M    C P++ TYN L+S   + G  + A +   EM+K GC  D+ 
Sbjct: 855 KKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLV 914

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY ++IDG+     V+EA    + +  KG+      F S +  L  +  L    +L D M
Sbjct: 915 TYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSM 974

Query: 474 -RKFYNPVI 481
             + YNP +
Sbjct: 975 EEEGYNPSV 983



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 6/246 (2%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +Q L  M + GH        + + TF     V+ A ++F  M++ G    +P+   Y  +
Sbjct: 202 VQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGC---NPSTNMYNFV 258

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  LV+         + G +      PD  T++  +     +G+++ A + ++EM   G 
Sbjct: 259 LELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGI 318

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P + T+   +  L  + N DEA + +  M  + C P+V TY  L++   + G  + A E
Sbjct: 319 DPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACE 378

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            + EM +  C+ D   Y  +IDGL    + + AC L +E+ ++GL    R   +Y + +S
Sbjct: 379 VFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLR---TYNIMIS 435

Query: 459 VIGDLG 464
           V+G  G
Sbjct: 436 VLGKAG 441



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 175  PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
            P +   + L+D+  K G+VD A E   +  + +  PN  TYN L              + 
Sbjct: 841  PNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKL 900

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            LEEM ++G  PD  TYN  ID   K  MV EA   F+ M+ KG     P   T+  +I +
Sbjct: 901  LEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIV---PDVITFTSLIES 957

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            L + D++ E   L   M   G  P V TY  +++ +  AGKV EA     EM  KG  PD
Sbjct: 958  LGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017

Query: 342  IVTYNCFLKVL 352
             +T     ++L
Sbjct: 1018 GITIGIMKRIL 1028


>gi|116790303|gb|ABK25569.1| unknown [Picea sitchensis]
          Length = 541

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 188/442 (42%), Gaps = 41/442 (9%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
            +E AL+ L + ++   V  VL+        A +FF WAG +    H PLA+NL++D+L 
Sbjct: 111 GVENALNELRLGVSIQFVEDVLKLSYGAGMEAVKFFRWAGLKLTRKHSPLAWNLLVDLLG 170

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT------------- 173
               K K F  +   +  MK  N+  VP+++   +   Y +  K+               
Sbjct: 171 ----KEKLFDAMWDCIKVMK--NEGTVPMEIFSSVFGNYVQAGKLDEAKMTFEVMEQYGC 224

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           + ++ ALN  + ALC+      A     RVK ++ P+A+TY ++               T
Sbjct: 225 RHDVVALNCYISALCRYKQAKAALEFFDRVKARIAPDADTYALMLEGWEIEGNVSMAKTT 284

Query: 222 LEEMI-QMGHAPDNFT-YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             EMI  +G  P+N + YN  + T      V EA      M+   S    P    +   +
Sbjct: 285 FGEMIVHLGWVPNNTSAYNAFLSTLVNGFQVEEALKFLVMMK---SLKCLPDLGFFRNTL 341

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG---KVEEAYKFLEEMGNK 336
             L Q    +  + L   M  SG +PD+ TY  ++ G+C +    +V+ A + L EM   
Sbjct: 342 QLLYQRKDTKNAYGLWELMRQSGIVPDLPTYNTMI-GVCCSVNPIQVDFADRLLVEMVCN 400

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD  +YN   + L   +  +EA  ++  M +    P    Y   I MYFE+ +PD A
Sbjct: 401 GAFPDFRSYNTIFEALIIARKVEEASSIFREMTKNEFCPLYANYVRAIKMYFEVEDPDMA 460

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              W  M ++      D    +IDG  D  +V EA     E +N+G+++P     + L  
Sbjct: 461 VIMWKHMIQKAIFPKSDCAATLIDGFCDLGRVSEALKYSLETINRGVEIPVETM-TKLKN 519

Query: 457 LSVIGDLGAIHKLSDHMRKFYN 478
               G   A  +L   M+   N
Sbjct: 520 ARQAGKQDAYGQLEKKMKSISN 541


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 162/357 (45%), Gaps = 59/357 (16%)

Query: 157  VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY- 214
            +LLM LK YT        P++ + + +++  C+ G +D    + + +K K +KPN+  Y 
Sbjct: 712  LLLMELKGYT--------PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYG 763

Query: 215  NILGM-----------QTLEEMIQMGHAPDNFTYNTAIDTFCK---------------AR 248
            +I+G+           +   EMI+ G  PD   Y T ID FCK               +R
Sbjct: 764  SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 823

Query: 249  MVT--------------------EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
             +T                    EA  LF  M  KG     P + T+  +I    +   M
Sbjct: 824  DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL---EPDSVTFTELINGYCKAGHM 880

Query: 289  EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            ++ F +  HMI +GC P+V TY  +++G+C  G ++ A + L EM   G  P+I TYN  
Sbjct: 881  KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 940

Query: 349  LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
            +  LC + N +EA++L G     G      TY  L+  Y + GE D A E   EM  +G 
Sbjct: 941  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 1000

Query: 409  AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
               + T+ V+++G      +E+   LL  ++ KG+      F+S + Q  +  +L A
Sbjct: 1001 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKA 1057



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 3/241 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G+ PD  +Y+T ++ +C+   + +   L E M+ KG     P +  Y  +I  L +  ++
Sbjct: 719 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL---KPNSYIYGSIIGLLCRICKL 775

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E       MI  G LPD   Y  +++G C  G +  A KF  EM ++   PD++TY   
Sbjct: 776 AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 835

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C   +  EA +L+  M   G  P   T+  LI+ Y + G    AF   + M + GC
Sbjct: 836 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 895

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
           + +V TY  +IDGL     ++ A  LL E+   GL+     ++S +  L   G++    K
Sbjct: 896 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 955

Query: 469 L 469
           L
Sbjct: 956 L 956



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 31/295 (10%)

Query: 162  LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
             + +   I+    P +     L+D LCK G +D A                       + 
Sbjct: 884  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN----------------------EL 921

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL---FEFMRTKGSTISSPTAKTYAIM 278
            L EM ++G  P+ FTYN+ ++  CK+  + EA  L   FE       T+      TY  +
Sbjct: 922  LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV------TYTTL 975

Query: 279  IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            + A  ++  M++   +L  M+  G  P + T+  ++ G CL G +E+  K L  M  KG 
Sbjct: 976  MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 1035

Query: 339  PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             P+  T+N  +K  C   N   A  +Y  M   G  P  +TY  L+  + +      A+ 
Sbjct: 1036 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 1095

Query: 399  TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             + EM  +G +  V TY V+I G     K  EA  + +++  +GL      FD +
Sbjct: 1096 LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 1150



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 16/284 (5%)

Query: 175  PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
            P++     ++   C+ G +V+  +   +     ++P++ T+  L              + 
Sbjct: 827  PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 886

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
               MIQ G +P+  TY T ID  CK   +  A +L   M   G     P   TY  ++  
Sbjct: 887  HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL---QPNIFTYNSIVNG 943

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            L ++  +EE   L+G    +G   D  TY  +++  C +G++++A + L+EM  KG  P 
Sbjct: 944  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 1003

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            IVT+N  +   C +   ++  +L   M+  G  P+  T+N L+  Y        A   + 
Sbjct: 1004 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 1063

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            +M  RG   D  TY  ++ G      ++EA FL +E+  KG  +
Sbjct: 1064 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 1107



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 90/200 (45%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y I+I  + Q  R++E   LL  M   G  PDV +Y  V+ G C  G++++ +K +E M
Sbjct: 691 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 750

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG  P+   Y   + +LC      EA   +  MI  G  P    Y  LI  + + G+ 
Sbjct: 751 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 810

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A + ++EM  R    DV TY  +I G      + EA  L  E+  KGL+     F   
Sbjct: 811 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 870

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           +      G +    ++ +HM
Sbjct: 871 INGYCKAGHMKDAFRVHNHM 890



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 179/444 (40%), Gaps = 37/444 (8%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           +++V KL  A        + + ++L        TD ++ VL + + + ++   FF WA  
Sbjct: 505 ITNVIKLRRA--------EPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFFDWARS 556

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN-NKVFVPV-DVLLMILKQY 165
           + +   E L   + + + +S   K  Q  L+ S  +  K N    FV   D+L+   K +
Sbjct: 557 RRDSNLESLCIVIHLAV-ASKDLKVAQ-SLISSFWERPKLNVTDSFVQFFDLLVYTYKDW 614

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK----VKPNANTY------- 214
               +V         ++    L   GL+  A  + +++ N        + N Y       
Sbjct: 615 GSDPRV--------FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKD 666

Query: 215 ---NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +    E  ++G   +  +YN  I   C+   + EA  L   M  KG T   P 
Sbjct: 667 CYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYT---PD 723

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y+ ++    +   +++ + L+  M   G  P+   Y  ++  +C   K+ EA +   
Sbjct: 724 VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 783

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G  PD V Y   +   C   +   A + +  M      P V TY  +IS + ++G
Sbjct: 784 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 843

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           +   A + +HEM  +G   D  T+  +I+G      +++A  +   ++  G       + 
Sbjct: 844 DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 903

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRK 475
           + +  L   GDL + ++L   M K
Sbjct: 904 TLIDGLCKEGDLDSANELLHEMWK 927


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++   +M++ G+ P    +N  +    + + +  A  LF+ +   G    SP  +TY I
Sbjct: 187 AIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGI---SPNTRTYNI 243

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I A   +D++   + L   M   GC+PDV TY  +++G+C   +V+ A   L+EM NKG
Sbjct: 244 LIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKG 303

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           Y PD +TYN  L  LC   N  EA RL  +M  +GC P V  YN +I+ +   G    A 
Sbjct: 304 YVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDAC 363

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   +M + GC  +  +Y  +++GL +  K +EA   +EE+++ G 
Sbjct: 364 QILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGF 409



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 171/392 (43%), Gaps = 43/392 (10%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           + T + V  L   Q +  +A   F  A  Q  + H    Y+ +I  L     +A+QF+ +
Sbjct: 97  MLTPARVHKLIASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLG----RARQFKTM 152

Query: 139 CSMLDYMKRNNKVFVP---VDVLLM---------ILKQYTEKIKVKTQPEINALNLLLDA 186
             ++  M+++   + P   VD++ +          +K + + ++   +P     N+LL  
Sbjct: 153 EGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIV 212

Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
           L +   ++ A ++ K++    + PN  TYNIL                       I   C
Sbjct: 213 LIEHKCLETALSLFKKLHEFGISPNTRTYNIL-----------------------IRAHC 249

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
            +  ++ A  LF  M  +G     P  +TY+I++  L +  +++    +L  M+N G +P
Sbjct: 250 HSDKLSHAYFLFNKMHKQGCI---PDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVP 306

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           D  TY  +L  +C    + EAY+ L +M   G  PD++ YN  +   C      +A ++ 
Sbjct: 307 DALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQIL 366

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M E GC P+  +Y  L++     G+ D A +   EM   G    +  Y ++I GL + 
Sbjct: 367 RDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNE 426

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            KV EAC +L  +  + L      +   LM++
Sbjct: 427 GKVGEACEVLVMMTKQTLAPHESTWSVLLMRI 458


>gi|297806669|ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297317055|gb|EFH47477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1029

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 180/422 (42%), Gaps = 30/422 (7%)

Query: 58   IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
            ++ +S  ++  ++AL+ L V  T + VV VL+  + +     RFF W G ++ Y H   A
Sbjct: 619  VLSSSRDWERTQEALEKLTVQFTPELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEA 678

Query: 118  YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE----KIKVKT 173
            YN+ I +        K F+ + S+   M+R     +  D   +++ QY       I ++T
Sbjct: 679  YNMSIKVAGC----GKDFKQMRSLFYEMRRQG-CLITQDTWAIMIMQYGRTGLTNIAIRT 733

Query: 174  QPEINALNLL-LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
              E+  + L+   +  KC +    E   + V+   K            T  EMI+ G  P
Sbjct: 734  FKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATK------------TFREMIRSGFVP 781

Query: 233  DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
            D       +   C+     +A    + +      I  P    Y+I I AL +  ++EE  
Sbjct: 782  DRELVQDYLGCLCEVGNTKDAKSCLDSL----GKIGFPVPVAYSIYIRALSRIGKLEEAL 837

Query: 293  SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            S L        L D  TY  ++ G+   G + +A   +  M   G  P +  Y   +   
Sbjct: 838  SELASFEGDRSLLDQYTYGSIVHGLLQRGDLHKALDKVNSMKEIGIKPGVHVYTSLIVHF 897

Query: 353  CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
               K  ++ L    +M E  C PSV TY  +I  Y  LG+ + A++ +  ++++G + D 
Sbjct: 898  FKEKQFEKVLETCHKMKEESCEPSVVTYTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDF 957

Query: 413  DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG--DLGAI--HK 468
             TY   I+ L    K E+A  LL E+++KG+      F +    L+  G  DL  I  HK
Sbjct: 958  KTYSKFINCLCQAGKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKQDLARIVLHK 1017

Query: 469  LS 470
             S
Sbjct: 1018 KS 1019



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 173/398 (43%), Gaps = 35/398 (8%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           +ME  L+ L      + V  VL+R      +A RFF W   +D ++H    YN M+ I  
Sbjct: 140 SMEDRLEILSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAG 199

Query: 127 STKYKAKQFRLVCSMLDYMKRN--NKVFVPVDVLLMILKQYT---------EKIKVKTQP 175
               +A+   +V  ++  M+++  +K      +L+ +  +           EK++ K+  
Sbjct: 200 ----EARNLDMVDELVKEMEKHACDKDIRTWTILISVYGKAKKIGKGLLVFEKMR-KSGF 254

Query: 176 EINAL--NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-----------GMQT 221
           E++A   N+++ +LC  G  D A    K +  K +     TY +L            +Q+
Sbjct: 255 ELDAAAYNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQS 314

Query: 222 L-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           + ++M+++    ++  +   + +FC +  + EA +L   ++ K   +    AK + I++ 
Sbjct: 315 IADDMVRICEISEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLD---AKYFEILVK 371

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L + +RM +   ++  M     L D + Y  ++ G      V +A +  E +   G PP
Sbjct: 372 GLCRANRMVDALEIVDIMKRRK-LDDSNVYGIIISGYLRQNDVSKALEQFEIIKKSGRPP 430

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            + TY   ++ L   K  ++   L+  MIE G  P       +++ +        A++ +
Sbjct: 431 RVSTYTEIMQQLFKLKQFEKGCNLFSEMIESGIEPDSVAITAVVAGHLGQNRVAEAWKVF 490

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             M+++G      +Y + +  L   S+ +E   L  ++
Sbjct: 491 GSMEEKGIKPTWKSYSIFMKELCRSSRYDEIITLFNQM 528



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%)

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L+  M    C  D+ T+  ++     A K+ +     E+M   G+  D   YN  ++ LC
Sbjct: 210 LVKEMEKHACDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDAAAYNIMIRSLC 269

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
               GD AL  Y  M+E G    ++TY ML+    +  + D       +M +     + D
Sbjct: 270 IAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHD 329

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            +  ++       K++EA  L+ E+ NK + L  + F+
Sbjct: 330 AFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFE 367



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 59/137 (43%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+   +  YN  L +  + +N D    L   M +  C   ++T+ +LIS+Y +  +    
Sbjct: 183 GFSHRVGIYNTMLSIAGEARNLDMVDELVKEMEKHACDKDIRTWTILISVYGKAKKIGKG 242

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + +M K G   D   Y +MI  L    + + A    +E++ KG+    R +   L  
Sbjct: 243 LLVFEKMRKSGFELDAAAYNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDC 302

Query: 457 LSVIGDLGAIHKLSDHM 473
           ++    +  +  ++D M
Sbjct: 303 IAKSEKVDVVQSIADDM 319


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 147/334 (44%), Gaps = 27/334 (8%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTL 222
           ++    +++D+ CK GL++ A      ++     PN  TY  L              +  
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE--------------FMRTKGSTIS 268
           E M+  G  P+  TY+  ID  CKA  + +A  +FE              F +       
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSE 636

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P    Y  ++    +  R+EE   LL  M   GC P+   Y  +++G+C  GK++EA +
Sbjct: 637 RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 696

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              EM   G+P  + TY+  +      K  D A ++  +M+E  C P+V  Y  +I    
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 756

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+ D A++    M+++GC  +V TY  MIDG     K+E    LLE + +KG+   Y 
Sbjct: 757 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYV 816

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482
            +   +      G L   H L + M++ + P  A
Sbjct: 817 TYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHA 850



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 26/262 (9%)

Query: 200 CKRVKNKVK-----PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKRV N +      P+   +N L              + L++M++ GH P    YN  I 
Sbjct: 356 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIG 415

Query: 243 TFC------KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C         ++  A   +  M   G  ++     ++      L    + E+ FS++ 
Sbjct: 416 SICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFT---RCLCSAGKYEKAFSVIR 472

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            MI  G +PD STY +VL  +C A K+E A+   EEM   G   D+ TY   +   C   
Sbjct: 473 EMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A + +  M EVGC P+V TY  LI  Y +  +   A E +  M   GC  ++ TY 
Sbjct: 533 LIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 417 VMIDGLFDCSKVEEACFLLEEV 438
            +IDG     ++E+AC + E +
Sbjct: 593 ALIDGHCKAGQMEKACQIFERM 614



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 127/311 (40%), Gaps = 51/311 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNIL------------GMQ 220
           +P     + L+D LCK G +D A+ +   +     P    TY+ L              +
Sbjct: 672 EPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 731

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M++   AP+   Y   ID  CK     EA  L + M  KG     P   TY  MI 
Sbjct: 732 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGC---QPNVVTYTAMID 788

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++E C  LL  M + G  P+  TY+ +++  C  G ++ A+  LEEM    +P 
Sbjct: 789 GFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 848

Query: 341 -----------------------------DIVTYNCFLKVLCDNKNGDEALRLYGRMIE- 370
                                        D   +    ++L DN    + L +  R++E 
Sbjct: 849 HAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEE 908

Query: 371 VGCWPSV-----QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           V  + +       TYN LI       + D AF  + EM K+G   ++ T+C +I GLF  
Sbjct: 909 VATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRN 968

Query: 426 SKVEEACFLLE 436
           SK+ EA  LL+
Sbjct: 969 SKISEALLLLD 979



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 134/341 (39%), Gaps = 39/341 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------------- 217
           P     N L+ A C  G   YA  + K+ VK    P    YNIL                
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLL 429

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +   EM+  G   +    ++     C A    +A  +   M  +G     P   TY
Sbjct: 430 ELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI---PDTSTY 486

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + ++  L    +ME  F L   M   G + DV TY  +++  C AG +E+A K+  EM  
Sbjct: 487 SKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P++VTY   +      K    A  L+  M+  GC P++ TY+ LI  + + G+ + 
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEK 606

Query: 396 AFETWHEMDKRGCAQDVD-----------------TYCVMIDGLFDCSKVEEACFLLEEV 438
           A + +  M       DVD                  Y  ++DG     +VEEA  LL+ +
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAM 666

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             +G +     +D+ +  L  +G L    ++   M +   P
Sbjct: 667 SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFP 707



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 135/325 (41%), Gaps = 28/325 (8%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKC 190
           KA Q    C + + M  +  V   VD   M  KQY +      +P +     LLD  CK 
Sbjct: 600 KAGQMEKACQIFERMCGSKDV-PDVD---MYFKQYDDD--NSERPNVVIYGALLDGFCKL 653

Query: 191 GLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
             V+ A  +   +     +PN   Y+ L              +   EM + G     +TY
Sbjct: 654 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTY 713

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           ++ ID + K +    A+ +   M        +P    Y  MI  L +  + +E + L+  
Sbjct: 714 SSLIDRYFKVKRQDLASKVLSKMLENSC---APNVVIYTEMIDGLCKVGKTDEAYKLMQM 770

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   GC P+V TY  +++G    GK+E   + LE MG+KG  P+ VTY   +   C N  
Sbjct: 771 MEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGA 830

Query: 358 GDEALRLYGRMIEVGCWPS-VQTYNMLISMYF-ELGEPDGAFETWHEMDKRGCAQDVDTY 415
            D A  L   M +   WP+    Y  +I  +  E  E  G  +   E+ +   A  +  Y
Sbjct: 831 LDVAHNLLEEMKQTH-WPTHAAGYRKVIEGFNKEFIESLGLLD---EIGQDDTAPFLSLY 886

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVN 440
            +++D L    ++E A  LLEEV  
Sbjct: 887 RLLVDNLIKAQRLEMALRLLEEVAT 911



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 151/386 (39%), Gaps = 64/386 (16%)

Query: 57  AIIDNSNAYDNM-----EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNY 111
           AI D  +  D++     +K L      L+   V+ VL+  +    +   FF+WAG Q  Y
Sbjct: 103 AIADAVSGGDDVFGSKSQKFLRQFREKLSESLVIEVLRLIERPSAV-ISFFVWAGRQIGY 161

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171
            H    YN ++D++                     R++   VP ++L  I     E    
Sbjct: 162 KHTSPVYNALVDLIV--------------------RDDDEKVPEELLQQIRDDDKEVFG- 200

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEEMIQMGH 230
                   LN+L+   C+ G    A     R+K+ + +P+ +TYN L             
Sbjct: 201 ------EFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCL------------- 241

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
                     I  F KA  +  A+ +   M      +   T + YA    +L +  +  E
Sbjct: 242 ----------IQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYA---YSLCKVGKWRE 288

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             +L   M     +PD   Y +++ G+C A   EEA  FL  M      P++VTY+  L 
Sbjct: 289 ALTL---METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 345

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
              + K      R+   M+  GC+PS + +N L+  Y   G+   A++   +M K G   
Sbjct: 346 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTP 405

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLE 436
               Y ++I G     K   +C LLE
Sbjct: 406 GYVVYNILI-GSICGDKDSLSCHLLE 430


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 152/323 (47%), Gaps = 15/323 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y + I+V   P++  ++++++A CK G VD A    K+++N  V+PN  TY+ L      
Sbjct: 180 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVS 239

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L+ M + G + +  TY   I  +CK   + EA  +   M+ + + +  P 
Sbjct: 240 LGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV--PD 297

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            + Y ++I    +  ++++   LL  M+  G   ++     ++ G C  G++ EA   + 
Sbjct: 298 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVIT 357

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M +    PD  +YN  L   C   +  EA  L  +M++ G  P+V TYN L+     +G
Sbjct: 358 RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG 417

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D A + WH M KRG A D   Y  ++DGLF     E A  L ++++ +G       F+
Sbjct: 418 AFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFN 477

Query: 452 SYLMQLSVIGDLGAIHKLSDHMR 474
           + +  L  +G +    ++ D M+
Sbjct: 478 TMISGLCKMGKMVEAEEIFDKMK 500



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 16/291 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------- 217
           T  +    +P+  + N LLD  C+ G    A  +C K ++  ++P   TYN L       
Sbjct: 357 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 416

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +Q    M++ G APD   Y+T +D   K      A+ L++ +  +G T S  T 
Sbjct: 417 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 476

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T   MI  L +  +M E   +   M + GC PD  TY+ +++G C A  V +A+K    
Sbjct: 477 NT---MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 533

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   P I  YN  +  L  ++   E   L   M   G  P++ TY  LI  + + G 
Sbjct: 534 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 593

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D AF ++ EM + G + ++     M+ GL+   +++EA  L++++V+ G 
Sbjct: 594 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 644



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 20/284 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET---------------ICKRVKNKVKPNANTYNILGM 219
           P+  A  +L+D  C+ G +D A                 IC  + N        +   G+
Sbjct: 296 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 355

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            T   M+     PD+++YNT +D +C+    +EA +L + M  +G     PT  TY  ++
Sbjct: 356 IT--RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGI---EPTVLTYNTLL 410

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +    ++   +   M+  G  PD   Y  +L+G+      E A    +++  +G+ 
Sbjct: 411 KGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFT 470

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
              +T+N  +  LC      EA  ++ +M ++GC P   TY  LI  Y +      AF+ 
Sbjct: 471 KSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKV 530

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              M++   +  ++ Y  +I GLF   ++ E   LL E+  +GL
Sbjct: 531 KGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGL 574



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 19/251 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPN--------ANTYNILGMQT---- 221
           P I     L+D  CK G++D A  +  +  +N +  N        +  Y +  +      
Sbjct: 576 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 635

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++M+  G  PD+  +  +   +   + + ++ D          T   P    Y I I  
Sbjct: 636 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD------ESCKTFLLPNNIVYNIAIAG 689

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  ++++       +   G +PD  TY  ++ G   AG V+EA++  +EM  +G  P+
Sbjct: 690 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 749

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTYN  +  LC ++N D A RL+ ++ + G +P+V TYN LI  Y ++G  D AF+   
Sbjct: 750 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 809

Query: 402 EMDKRGCAQDV 412
           +M + G +  +
Sbjct: 810 KMIEEGISPSI 820



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           +L+E  +    P+N  YN AI   CK   V +A   F  +  KG     P   TY  +I 
Sbjct: 667 SLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFV---PDNFTYCTLIH 723

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  ++E F L   M+  G +P++ TY  ++ G+C +  V+ A +   ++  KG  P
Sbjct: 724 GYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFP 783

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML--ISMYF 388
           ++VTYN  +   C   N D A +L  +MIE G  PS+Q  N+L  +SM+ 
Sbjct: 784 NVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSIQC-NLLESVSMWL 832



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 129/315 (40%), Gaps = 48/315 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------Q 220
            P+      L+D  CK   V  A  +   ++ + + P+   YN  I G+           
Sbjct: 505 SPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTD 564

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM   G  P+  TY   ID +CK  M+ +A   +  M   G + +     T   M+ 
Sbjct: 565 LLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICST---MVS 621

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVS-------------------------------- 308
            L +  R++E   L+  M++ G  PD                                  
Sbjct: 622 GLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNI 681

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            Y   + G+C  GKV++A +F   +  KG+ PD  TY   +       N DEA RL   M
Sbjct: 682 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 741

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  G  P++ TYN LI+   +    D A   +H++ ++G   +V TY  +IDG      +
Sbjct: 742 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 801

Query: 429 EEACFLLEEVVNKGL 443
           + A  L ++++ +G+
Sbjct: 802 DAAFKLKDKMIEEGI 816



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SPT   + +++   V+    +    +  +M   G +P + +   +L  +   G+   A+ 
Sbjct: 121 SPT--VFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHY 178

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M   G  PD+   +  +   C +   DEA     +M  +G  P++ TY+ LI+ Y 
Sbjct: 179 VYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYV 238

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            LG+ + A      M ++G +++V TY ++I G     K++EA
Sbjct: 239 SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 281



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 94/215 (43%), Gaps = 18/215 (8%)

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
           T +   F+F+  + +    P  K+Y  ++  L +    +E  + L  ++      D+  +
Sbjct: 49  TASLGFFQFVSKQQNF--RPNVKSYCKLVHILSRGRMYDETRAYLNQLV------DLCKF 100

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
           K+   G  +  ++   Y+         + P +  ++  LKV  +      AL ++  M +
Sbjct: 101 KD--RGNVIWDELVGVYREF------AFSPTV--FDMILKVYVEKGLTKNALYVFDNMGK 150

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  PS+++ N L++   + GE   A   + +M + G   DV    +M++      KV+E
Sbjct: 151 CGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDE 210

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           A   ++++ N G++     + S +     +GD+ A
Sbjct: 211 AAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEA 245


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 179/403 (44%), Gaps = 35/403 (8%)

Query: 98  AFRFFMWAGHQDNYAHE-PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  FF WA  +D+Y H+ P  YN MID+      K +QF L   ++D MK  N V + ++
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSG----KVRQFDLAWHLIDLMKSRN-VEISIE 187

Query: 157 VLLMILKQY------TEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRV 203
              +++++Y      +E +    +       P+  A ++++  L +      A++    +
Sbjct: 188 TFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL 247

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           K++ +P+   Y  L              +  +EM   G  P+ +TY+  ID  C+   ++
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQIS 307

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
            A D+F  M   G    +P A T+  ++   V+  R E+   +   M   GC PD  TY 
Sbjct: 308 RAHDVFADMLDSGC---APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYN 364

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++E  C    +E A K L  M  K    +  T+N   + +   ++ + A R+Y +M+E 
Sbjct: 365 FLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEA 424

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            C P+  TYN+L+ M+      D   +   EMD +    +V+TY +++           A
Sbjct: 425 KCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNA 484

Query: 432 CFLLEEVVNKGLKLPYRK-FDSYLMQLSVIGDLGAIHKLSDHM 473
             L +E+V +    P    ++  L QL   G L    +L + M
Sbjct: 485 YKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 29/266 (10%)

Query: 94  EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY------MKR 147
           E +  F+    AG + N       Y+++ID L      ++   +   MLD       +  
Sbjct: 273 EAEKVFKEMKLAGIEPNV----YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328

Query: 148 NN--KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKC-GLVDYAETICKRVK 204
           NN  +V V       +L+ Y +  K+  +P+    N L++A C+   L +  + +   +K
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIK 388

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            K + NA+T+N +              +   +M++    P+  TYN  +  F  ++    
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDM 448

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYK 311
              + + M  K      P   TY +++            + L   M+   CL P +S Y+
Sbjct: 449 VLKMKKEMDDKEV---EPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYE 505

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKG 337
            VL  +  AG++++  + +E+M  KG
Sbjct: 506 MVLAQLRRAGQLKKHEELVEKMIQKG 531


>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
          Length = 975

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 140/325 (43%), Gaps = 51/325 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-----KNKV-KPNANTYNILGMQTL 222
           I+   +P  ++ N+++  LCK   +D A  + K +     K K+   N   + +  M  L
Sbjct: 432 IREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRL 491

Query: 223 EE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           EE       M  +G  P  FTYN+     C+ +    A DL   M+T G     P  K  
Sbjct: 492 EEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHP---PWIKNC 548

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-------------- 321
             M+  L  + R+ E    L  M+  G LPD+ TY   + GMC  G              
Sbjct: 549 TEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISC 608

Query: 322 ---------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                                K++EA K +EEM  KG  P +VTYN  + V C     ++
Sbjct: 609 KYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEK 668

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+    +M+     P+V TY  LI  +   G PD A + W EM ++GCA +   Y   I+
Sbjct: 669 AISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFIN 728

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
           GL  C ++E A    EE+V KG +L
Sbjct: 729 GLRKCGRIETALTYFEEMVTKGFEL 753



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/435 (20%), Positives = 162/435 (37%), Gaps = 60/435 (13%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS---- 127
           L  L   LT  +   VL R     + A  FF WA  Q  + H   + N M  +L      
Sbjct: 62  LRRLAAELTAPAAESVLLRLP-SWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRA 120

Query: 128 --TKYKAKQFRLVCSM----LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALN 181
              +  A      C M    L ++ R        D  +        +      P     N
Sbjct: 121 HLDRLAADAISARCLMTPGALGFLLRCLGAAGLPDTAVRAFD--AARASFGCTPNSYTYN 178

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNILGM--------------QTLEEMI 226
            LLDAL K G  D A+   + +  +    + + Y +  +                 + M 
Sbjct: 179 CLLDALAKAGRADDAQARLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMS 238

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           ++G   D     T +  F K   V  A +L   M   G  +S    KT ++++    +  
Sbjct: 239 ELGWV-DEHVLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSE---KTLSVLVHGFTKQG 294

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+++   +   M++ G + D++ Y  ++EG+C    +  A K  +EM + G  PD+    
Sbjct: 295 RVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLK 354

Query: 347 CFLKVLCDNKNGDEALRLYGRMIE-----VGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             ++  C  + GD A  + G  I      +     V  YN+++      GE + A++   
Sbjct: 355 KVIEAFC--REGDFA--VIGPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLR 410

Query: 402 EM---------DKRGCAQ----------DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            M         D  G A           + D++ +++ GL    K++ A  L +++++ G
Sbjct: 411 SMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLG 470

Query: 443 LKLPYRKFDSYLMQL 457
            K     F+  + +L
Sbjct: 471 CKGKILMFNDLIHEL 485



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 7/177 (3%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM----GNKGYPPDIVTYNCFLKVLCDNKN 357
           GC P+  TY  +L+ +  AG+ ++A   L EM    G+     D  T    L+  C+   
Sbjct: 169 GCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSV--DKYTLTSLLRCYCNAGR 226

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D+A  ++ RM E+G W        L+  + + G+ DGA E    M+  G      T  V
Sbjct: 227 PDDANDVFQRMSELG-WVDEHVLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSV 285

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           ++ G     +V++A  +  ++V+ G  +    +   +  L    D+    KL   M+
Sbjct: 286 LVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMK 342


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 48/333 (14%)

Query: 176 EINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           ++ + N++++ LC+C   V     + K +K   +P+  T + L             +  +
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------------- 269
            +M +MG  PD   YNT ID  CK  +V +A +LF+ M   G    +             
Sbjct: 163 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS 222

Query: 270 -------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                              P   T+  +I   V+  +  E   L   M      PDV TY
Sbjct: 223 GRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTY 282

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G+C+ G+V+EA + L+ M  KG  PD+VTYN  +   C +K  DE  +L+  M +
Sbjct: 283 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 342

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G      TYN +I  YF+ G PD A E +  MD R    ++ TY +++ GL    +VE+
Sbjct: 343 RGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEK 399

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           A  L E +    ++L    ++  +  +  IG++
Sbjct: 400 ALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 56/354 (15%)

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197
           V S+++   + N+VF  +D++       ++  ++  +P++   N ++D  CK GLV+ A 
Sbjct: 142 VSSLINGFCQGNRVFDAIDLV-------SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 194

Query: 198 TICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTF 244
            +  R+ ++ V+ +A TYN L              + + +M+     P+  T+   ID F
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 254

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
            K    +EA  L+E M  +      P   TY  +I  L  + R++E   +L  M+  GCL
Sbjct: 255 VKEGKFSEAMKLYEEMTRR---CVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 311

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV------------- 351
           PDV TY  ++ G C + +V+E  K   EM  +G   D +TYN  ++              
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371

Query: 352 -------------------LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
                              LC N   ++AL L+  M +      + TYN++I    ++G 
Sbjct: 372 FSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGN 431

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            + A++ +  +  +G   DV +Y  MI G     + +++  L  ++   GL LP
Sbjct: 432 VEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL-LP 484



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 144/316 (45%), Gaps = 14/316 (4%)

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
           S   KA +F  +C     +++ N V VP           T++  +  + EI+    ++ +
Sbjct: 8   SIASKANKFLNLC----LLQKGNPVIVPFISRFWGRTFSTKRSSMNLEEEIDLFCKMIQS 63

Query: 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
                +VD+++ + K  K+K     N   ++ +    E+  +GH  D ++YN  I+  C+
Sbjct: 64  RPLPSIVDFSKVLSKIAKSK-----NYDLVISLFHHMEVCGIGH--DLYSYNIVINCLCR 116

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
                 A  +   M   G     P   T + +I    Q +R+ +   L+  M   G  PD
Sbjct: 117 CSRFVIALSVVGKMMKFGY---EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPD 173

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  Y  +++G C  G V +A +  + M   G   D VTYN  +  LC +    +A RL  
Sbjct: 174 VVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 233

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+     P+V T+  +I ++ + G+   A + + EM +R    DV TY  +I+GL    
Sbjct: 234 DMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHG 293

Query: 427 KVEEACFLLEEVVNKG 442
           +V+EA  +L+ +V KG
Sbjct: 294 RVDEAKQMLDLMVTKG 309



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 3/250 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +MIQ    P    ++  +    K++       LF  M   G         +Y I+I  L 
Sbjct: 59  KMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGI---GHDLYSYNIVINCLC 115

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R     S++G M+  G  PDV T   ++ G C   +V +A   + +M   G+ PD+V
Sbjct: 116 RCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVV 175

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            YN  +   C     ++A+ L+ RM   G      TYN L++     G    A     +M
Sbjct: 176 IYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDM 235

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             R    +V T+  +ID      K  EA  L EE+  + +      ++S +  L + G +
Sbjct: 236 VMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRV 295

Query: 464 GAIHKLSDHM 473
               ++ D M
Sbjct: 296 DEAKQMLDLM 305



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 77/186 (41%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   L   MI S  LP +  + +VL  +  +   +        M   G   D+ +YN 
Sbjct: 50  LEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNI 109

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC       AL + G+M++ G  P V T + LI+ + +      A +   +M++ G
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV  Y  +IDG      V +A  L + +   G++     ++S +  L   G      
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229

Query: 468 KLSDHM 473
           +L   M
Sbjct: 230 RLMRDM 235


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 145/336 (43%), Gaps = 17/336 (5%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP 209
           K F     L   L  + +  K+  QP++   + LL  LC   + D             +P
Sbjct: 120 KCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLC---VEDRVSEALDLFHQMCRP 176

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           N  T+  L             +  L+ M++ G  P+  TY T +D  CK      A +L 
Sbjct: 177 NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLL 236

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M         P    Y+ +I  L ++ R  +  +L   M   G  PD+ TY  +++G 
Sbjct: 237 RKMEEMSHI--KPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGF 294

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C +G+  EA + L+EM  +   P++VTY+  +      +   EA  LY  M+  G  P+ 
Sbjct: 295 CSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNT 354

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TYN +I  + +    D A   ++ M  +GC+ DV T+  +IDG     ++++   LL E
Sbjct: 355 ITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHE 414

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +   GL      +++ +    ++GDL A   LS  M
Sbjct: 415 MTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQM 450



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 154/361 (42%), Gaps = 37/361 (10%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ---------YT 166
             YN MID   S+   ++  RL+  ML+  K N  V     ++   +K+         Y 
Sbjct: 285 FTYNCMIDGFCSSGRWSEAQRLLQEMLER-KINPNVVTYSALINAYVKERKFFEAEELYD 343

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +     P     N ++D  CK   +D AE +   +  K   P+  T+N L        
Sbjct: 344 EMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAK 403

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               G + L EM + G   D  TYNT I  FC    +  A DL + M + G     P   
Sbjct: 404 RIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVC---PDIV 460

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLAGK 322
           T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   GK
Sbjct: 461 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGK 520

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
             EA +  +EM ++G  P+ +TY+  +  LC     DEA +++  M      P V T+N 
Sbjct: 521 FLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 580

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+S Y + G  D   E + EM +RG   D  TY  +I G      +  A  + +E+++ G
Sbjct: 581 LVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSG 640

Query: 443 L 443
           +
Sbjct: 641 V 641



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 122/272 (44%), Gaps = 17/272 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GM 219
           QP       ++D +CK G    A  + ++++  + +KPN   Y+ +              
Sbjct: 210 QPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAH 269

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM + G  PD FTYN  ID FC +   +EA  L + M  +     +P   TY+ +I
Sbjct: 270 NLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKI---NPNVVTYSALI 326

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A V+  +  E   L   M+  G +P+  TY  +++G C   +++ A      M  KG  
Sbjct: 327 NAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCS 386

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+ T+N  +   C  K  D+   L   M E G      TYN LI  +  +G+ + A + 
Sbjct: 387 PDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDL 446

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             +M   G   D+ T   ++DGL D  K+++A
Sbjct: 447 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 478



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++   N L+D  C    +D   E + +  +  +  +  TYN L             + 
Sbjct: 386 SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALD 445

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
             ++MI  G  PD  T NT +D  C    + +A ++F+ M+     + +        P  
Sbjct: 446 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDV 505

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +TY I+I  L+   +  E   L   M + G +P+  TY  ++ G+C   +++EA +  + 
Sbjct: 506 QTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDS 565

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + PD+VT+N  +   C     D+ L L+  M   G      TY  LI  + ++G 
Sbjct: 566 MGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGN 625

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+  L+   +++ A  +LE++
Sbjct: 626 INGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   L   M+ S  LP V  + +++  +    + +      ++M  K  P D+ ++N 
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K  C       AL  +G++ ++G  P V T++ L+           A + +H+M    
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM---- 173

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           C  +V T+  +++GL    +V EA  LL+ +V  GL+     + + +  +  IGD
Sbjct: 174 CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGD 228



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 9/196 (4%)

Query: 244 FCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           F + + + +A DLF + +R++      P+   +  ++  +V+ +R +   SL   M    
Sbjct: 52  FHEIKGLEDAIDLFSDMVRSR----PLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              DV ++  +++  C   K+  A     ++   G+ PD+VT++  L  LC      EAL
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L+ +M    C P+V T+  L++     G    A      M + G   +  TY  ++DG+
Sbjct: 168 DLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 223

Query: 423 FDCSKVEEACFLLEEV 438
                   A  LL ++
Sbjct: 224 CKIGDTVSALNLLRKM 239



 Score = 38.5 bits (88), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 47/104 (45%)

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           K  ++A+ L+  M+     PSV  +N L+ +   +  PD     + +M+++    DV ++
Sbjct: 56  KGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSF 115

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
            ++I     CSK+  A     ++   G +     F + L  L V
Sbjct: 116 NILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCV 159


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 152/337 (45%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E +++   P I   N L+  LC+ GL +   E + + V++   P+   Y  +        
Sbjct: 252 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEG 311

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  P+   YNT +   C A    E  +L   M  K   +      
Sbjct: 312 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD---V 368

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M+  GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P+ ++Y   LK LC  +   +A  L  +MI+ GC  +  T+N LI+   + G  
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 488

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K +EA  LL  +VNKG+      + S 
Sbjct: 489 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 548

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 549 ASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS 585



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 119/269 (44%), Gaps = 25/269 (9%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNF 235
           ++   NL+L+A+C  G VD A                      +  L ++   G  PD  
Sbjct: 191 DVGNCNLVLNAICDQGSVDEA----------------------LHLLRDLPSFGCEPDVV 228

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           +YN  +   C A+      +L E M         P   T+  +I  L +N   E    +L
Sbjct: 229 SYNAVLKGLCMAKRWGCVQELMEEMVRMA---CPPNIVTFNTLISYLCRNGLFERVHEVL 285

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+  GC PD+  Y  +++G+C  G +E A++ L  M + G  P++V YN  LK LC  
Sbjct: 286 AQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSA 345

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           +  +E   L   M +  C     T+N+L+  + + G  D   E   +M +RGC  DV TY
Sbjct: 346 ERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITY 405

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +I+G      ++EA  LL+ +   G K
Sbjct: 406 TTVINGFCKEGLIDEAVMLLKSMTACGCK 434



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 16/276 (5%)

Query: 180 LNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
            N+L+D  C+ GLVD   E + + ++    P+  TY  +             +  L+ M 
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  P+  +Y   +   C A    +A DL   M  +G  ++  T  T   +I  L +  
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNT---LINFLCKKG 486

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +E+   LL  M+ +GC PD+ +Y  V++G+  AGK +EA + L  M NKG  P+ + Y+
Sbjct: 487 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 546

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                L      ++ ++++  + +         YN +IS   + GE + A E    M   
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           GC  +  TY ++I GL     V+EA  +L E+ +KG
Sbjct: 607 GCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 23/296 (7%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++ Y+ RN  +F  V  +L       + ++    P+I     ++D +CK G ++ A  I
Sbjct: 267 TLISYLCRNG-LFERVHEVL------AQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI 319

Query: 200 CKRVKN-KVKPNANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             R+ +  +KPN   YN L  G+          + L EM       D+ T+N  +D FC+
Sbjct: 320 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
             +V    +L E M  +G     P   TY  +I    +   ++E   LL  M   GC P+
Sbjct: 380 NGLVDRVIELLEQMLERGCM---PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             +Y  VL+G+C A +  +A   + +M  +G P + +T+N  +  LC     ++A+ L  
Sbjct: 437 TISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLK 496

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +M+  GC P + +Y+ +I    + G+ D A E  + M  +G + +   Y  +   L
Sbjct: 497 QMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 552



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 17/277 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N ++   C+ G ++ A  +   V   V PNA TY  +             +  L+EM + 
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPRR 151

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G AP    Y+  ++  C+      A  + E +  +G  +         +++ A+     +
Sbjct: 152 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN---LVLNAICDQGSV 208

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E   LL  + + GC PDV +Y  VL+G+C+A +     + +EEM     PP+IVT+N  
Sbjct: 209 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC N   +    +  +M+E GC P ++ Y  +I    + G  + A E  + M   G 
Sbjct: 269 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGL 328

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             +V  Y  ++ GL    + EE   LL E+ +K   L
Sbjct: 329 KPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPL 365



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 3/170 (1%)

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ G C AG++E A +    +     PP+  TY   ++ LC      +AL +   M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             GC P    Y++++      G    A     ++  RGCA DV    ++++ + D   V+
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           EA  LL ++ + G +     +++ L  L +    G + +L + M +   P
Sbjct: 210 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 259


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 16/287 (5%)

Query: 169 IKVKTQPEINALNLLLDALC-KCGLVDYAETICKRVKNKVKPNANTYNIL---------- 217
           IK+  +P+    + L++ LC +       E   + V +  +PN +TYN +          
Sbjct: 146 IKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKT 205

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  L++M + G  PD   YNT ID  CK R+V+EA D+F  ++ KG     P   TY
Sbjct: 206 TVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGV---RPDVFTY 262

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I++  L  +D+ EE  +L   M++   +PDV T+  +++ +C  G + EA   ++ M  
Sbjct: 263 SILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIE 322

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG  P+  TYN  +   C      EA  ++  MI  GC P+V +YN+LI+ Y +    D 
Sbjct: 323 KGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDE 382

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           A E + EM  RG   +   Y  +I GL    +  EA  L +++  +G
Sbjct: 383 ARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQG 429



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 125/272 (45%), Gaps = 16/272 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           K   +P+I   N ++D LCK  LV  A  I   +K K V+P+  TY+IL           
Sbjct: 217 KAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKE 276

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                  EM+ +   PD  T+N  +D  CK  M++EA  + + M  KG     P   TY 
Sbjct: 277 EASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGV---EPNYATYN 333

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++      +++ E   +   MI  GC+P+V +Y  ++ G C A +++EA +  +EM  +
Sbjct: 334 SLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFR 393

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P+   YN  +  LC      EA  L+  M   GC P + T  +L+    +LG  D A
Sbjct: 394 GLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNA 453

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
              +  M       ++ TY ++I  ++   K+
Sbjct: 454 LRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 3/222 (1%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D F +N  I+ F + + V  A  +   +   G     P A T++ +I  L   D+     
Sbjct: 118 DVFHFNILINCFSRLQRVDFAFSVLGKIIKLGF---EPDAVTFSSLINGLCFEDKFARAM 174

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
                M+ SG  P++ TY  +++G C  GK   A   L++M   G  PDIV YN  +  L
Sbjct: 175 EFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGL 234

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C ++   EAL ++  +   G  P V TY++L+       + + A   ++EM       DV
Sbjct: 235 CKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDV 294

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            T+ +++D L     + EA  +++ ++ KG++  Y  ++S +
Sbjct: 295 VTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLM 336



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C    +E+A      M +K   P IV ++  L  L   K+    L L  R+  +     V
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDV 119

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             +N+LI+ +  L   D AF    ++ K G   D  T+  +I+GL    K   A    +E
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDE 179

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIG 461
           +V  G +     +++ +     IG
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIG 203


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 162/357 (45%), Gaps = 59/357 (16%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY- 214
           +LLM LK YT        P++ + + +++  C+ G +D    + + +K K +KPN+  Y 
Sbjct: 269 LLLMELKGYT--------PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYG 320

Query: 215 NILGM-----------QTLEEMIQMGHAPDNFTYNTAIDTFCK---------------AR 248
           +I+G+           +   EMI+ G  PD   Y T ID FCK               +R
Sbjct: 321 SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380

Query: 249 MVT--------------------EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            +T                    EA  LF  M  KG     P + T+  +I    +   M
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL---EPDSVTFTELINGYCKAGHM 437

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++ F +  HMI +GC P+V TY  +++G+C  G ++ A + L EM   G  P+I TYN  
Sbjct: 438 KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 497

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC + N +EA++L G     G      TY  L+  Y + GE D A E   EM  +G 
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
              + T+ V+++G      +E+   LL  ++ KG+      F+S + Q  +  +L A
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKA 614



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 3/241 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G+ PD  +Y+T ++ +C+   + +   L E M+ KG     P +  Y  +I  L +  ++
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL---KPNSYIYGSIIGLLCRICKL 332

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E       MI  G LPD   Y  +++G C  G +  A KF  EM ++   PD++TY   
Sbjct: 333 AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C   +  EA +L+  M   G  P   T+  LI+ Y + G    AF   + M + GC
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
           + +V TY  +IDGL     ++ A  LL E+   GL+     ++S +  L   G++    K
Sbjct: 453 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512

Query: 469 L 469
           L
Sbjct: 513 L 513



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 25/292 (8%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
            + +   I+    P +     L+D LCK G +D A                       + 
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN----------------------EL 478

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM ++G  P+ FTYN+ ++  CK+  + EA  L       G  +++ T  TY  ++ A
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG--LNADTV-TYTTLMDA 535

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++  M++   +L  M+  G  P + T+  ++ G CL G +E+  K L  M  KG  P+
Sbjct: 536 YCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+N  +K  C   N   A  +Y  M   G  P  +TY  L+  + +      A+  + 
Sbjct: 596 ATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQ 655

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           EM  +G +  V TY V+I G     K  EA  + +++  +GL      FD +
Sbjct: 656 EMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++     ++   C+ G +V+  +   +     ++P++ T+  L              + 
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              MIQ G +P+  TY T ID  CK   +  A +L   M   G     P   TY  ++  
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL---QPNIFTYNSIVNG 500

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++  +EE   L+G    +G   D  TY  +++  C +G++++A + L+EM  KG  P 
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVT+N  +   C +   ++  +L   M+  G  P+  T+N L+  Y        A   + 
Sbjct: 561 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 620

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +M  RG   D  TY  ++ G      ++EA FL +E+  KG  +
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 664



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 90/200 (45%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y I+I  + Q  R++E   LL  M   G  PDV +Y  V+ G C  G++++ +K +E M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG  P+   Y   + +LC      EA   +  MI  G  P    Y  LI  + + G+ 
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A + ++EM  R    DV TY  +I G      + EA  L  E+  KGL+     F   
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           +      G +    ++ +HM
Sbjct: 428 INGYCKAGHMKDAFRVHNHM 447



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 95/449 (21%), Positives = 180/449 (40%), Gaps = 37/449 (8%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF 102
           E    +++V KL  A        + + ++L        TD ++ VL + + + ++   FF
Sbjct: 57  EFVHQITNVIKLRRA--------EPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFF 108

Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN-NKVFVPV-DVLLM 160
            WA  + +   E L   + + + +S   K  Q  L+ S  +  K N    FV   D+L+ 
Sbjct: 109 DWARSRRDSNLESLCIVIHLAV-ASKDLKVAQ-SLISSFWERPKLNVTDSFVQFFDLLVY 166

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK----VKPNANTY-- 214
             K +    +V         ++    L   GL+  A  + +++ N        + N Y  
Sbjct: 167 TYKDWGSDPRV--------FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLT 218

Query: 215 --------NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       +    E  ++G   +  +YN  I   C+   + EA  L   M  KG T
Sbjct: 219 RLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYT 278

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   +Y+ ++    +   +++ + L+  M   G  P+   Y  ++  +C   K+ EA
Sbjct: 279 ---PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   EM  +G  PD V Y   +   C   +   A + +  M      P V TY  +IS 
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 395

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           + ++G+   A + +HEM  +G   D  T+  +I+G      +++A  +   ++  G    
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 455

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              + + +  L   GDL + ++L   M K
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWK 484


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 175/412 (42%), Gaps = 46/412 (11%)

Query: 75  LGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY--KA 132
           L   L    VV +LQ  +  + +  RFF W   +  + H+   +  M++ L   +    A
Sbjct: 72  LSPKLKPHHVVNILQTHKNTDSV-LRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPA 130

Query: 133 KQFRLV----CSMLDYMKRNNKVFVPVD-------------VLLMILKQ----------Y 165
              R++    C     +KR  +    ++              LL+ L +          Y
Sbjct: 131 DHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMY 190

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILG---- 218
            + +    +P +   N +++ LCK G V  A+ I   + +    PNA TY   ILG    
Sbjct: 191 IKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRN 250

Query: 219 ------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                     + M++ G  P++ TY+T I+  C    + EA D+ E M  KG     PT 
Sbjct: 251 HNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGI---EPTV 307

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY I +V+L       E   LLG M   GC+P++ T+  ++ G+   GK E A     +
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHK 367

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  P  VTYN  +  LC     + A  ++  M+  G  PS QTYN +I  +  +G+
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              A   + +M K G + +V TY  +I G      +  A  LLE +   GLK
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 16/270 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYN-------ILG-----MQT 221
           P     N L++ LC  G  + A TI K  + +   P+  TYN       ++G     M  
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M++ G +P+  TYNT I  +CK   +  A  L E M+  G     P A TY  +I  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGL---KPDAWTYTELISG 491

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++E   SL   M+  G  P+  TY  +++G     KV++A     +M   G  P 
Sbjct: 492 FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPS 551

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +       +  EA    G+M++ G  P+V TY   I      G    AF+ +H
Sbjct: 552 SQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFH 611

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           EM+KR    ++ TY  +I GL    + E+A
Sbjct: 612 EMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 122/285 (42%), Gaps = 18/285 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQT 221
           P     N ++   C  G +  A  I  K +K    PN  TYN L             M+ 
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE M   G  PD +TY   I  F +   +  A  LF  M   G    SP   TY  +I  
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI---SPNHVTYTAIIDG 526

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                ++++  +L   M+ SG LP   TY  ++ G      + EA  F  +M  +G  P+
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA--FET 399
           ++TY  F+  LC N     A +++  M +   +P++ TY+ LI    + G  + A  +  
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNL 646

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              +   GC  +VDTY  ++ GL    +  EA  L+  +  KGL+
Sbjct: 647 LARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQ 691



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 112/261 (42%), Gaps = 16/261 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNILGMQTLEE--------- 224
           P I     L+  L + G  + A  +  K + + + P   TYN L  Q   E         
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M+  G  P   TYN  I  FC    + +A  +F+ M   GS   SP   TY  +I  
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS---SPNVITYNTLIYG 456

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   +     LL  M  +G  PD  TY E++ G    GK+E A      M   G  P+
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTY   +    +    D+AL L+ +M+E G  PS QTYN++IS + +      A     
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCG 576

Query: 402 EMDKRGCAQDVDTYCVMIDGL 422
           +M K+G   +V TY   IDGL
Sbjct: 577 KMVKQGLLPNVITYTSFIDGL 597



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 54/277 (19%)

Query: 201 KRVKNKVKPNANTYNIL-----GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKAR 248
           K V++   P++ TYN++        ++ E       M++ G  P+  TY + ID  C+  
Sbjct: 542 KMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNG 601

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME--ECFSLLGHMINSGCLPD 306
               A  +F  M  +      P   TY+ +I  L Q  R E  E ++LL  + + GC P+
Sbjct: 602 RTGLAFKIFHEMEKRNYF---PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V TY  +++G+C  G+  EA + +  M  KG  P    Y   L   C N   + AL ++ 
Sbjct: 659 VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFY 718

Query: 367 RMIEVG-------------------------C---------WPSVQT-YNMLISMYFELG 391
            M  +G                         C         W S +  + +L+    + G
Sbjct: 719 SMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEG 778

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL--FDCS 426
           E D   +  H M+ R C  +  TY ++   L   DC+
Sbjct: 779 ETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCA 815


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 176/405 (43%), Gaps = 39/405 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E++  ++   L+ D+  GVL R +     A  F+ WA  +  ++H     N ++  L  
Sbjct: 50  LERSHAAVSTKLSRDTFGGVLGRLRCTCN-ALGFYHWAATRPGFSHTLFTRNSLLLALVR 108

Query: 128 TKYKAKQFRLVCSMLD-------------YMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
             + +       S +              +  R++  F  V+ LL  +K         T 
Sbjct: 109 GGHLSDALGFFQSSISEPNVSSFNILLRGFAARDD--FEVVNALLREMKSRGITSNGATH 166

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
                  ++L ALC    +D A +    V  NK +P   TY +L                
Sbjct: 167 ------GVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDV 220

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEMI+ G+ PD   Y++ ID   KA  V EA  L + M  +G     PTA  Y  ++  
Sbjct: 221 FEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGP---PPTAVAYTSIVAG 277

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R++E    +  M      P V TY  ++ G    GKVE+A+  +EEM ++   PD
Sbjct: 278 LCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPD 337

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            ++Y  F++ L      +EA +++  M+E GC P + TY ++I  + + G    A     
Sbjct: 338 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 397

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            MDK     +   Y +++DG    S++EEA  L + ++  G+ LP
Sbjct: 398 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGI-LP 441



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 140/321 (43%), Gaps = 20/321 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-----GM-------QT 221
           P   A   ++  LCKCG +  A +TI +  + +++P  +TY+ +     GM         
Sbjct: 266 PTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAV 325

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EEM     APD  +Y   I+         EA  +FE M  KG     P   TY I+I  
Sbjct: 326 MEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGC---KPDMHTYGIIIDN 382

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   M     +L  M  +   P+   Y  +++G   + ++EEA +  + +   G  P 
Sbjct: 383 FCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPS 442

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFET 399
            VTYN  +  LC  K  DEAL L   M        PS+ TY+M+I    ++G  + AF+ 
Sbjct: 443 TVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDL 502

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             EM   G   D  TY  +I  L    KV  A  LLEE++  G+  P       L+Q+  
Sbjct: 503 LAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGI-FPDDHTYGTLVQILC 561

Query: 460 IGDLGAIHK-LSDHMRKFYNP 479
             D+ A    L + MR  + P
Sbjct: 562 RSDVDAAWDLLQEMMRNGHTP 582



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 15/221 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P+++   +++D  CK G +  A  + + + K  VKPN   Y ++             ++
Sbjct: 370 KPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALE 429

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             + +++ G  P   TYNT I+  CK + + EA +L   M+ +   +  P+  TY+++I 
Sbjct: 430 LYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELE-PSIVTYSMIIH 488

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +    E  F LL  MI++G +PD  TY  +++ +  AGKV  A + LEEM   G  P
Sbjct: 489 GLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFP 548

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           D  TY   +++LC   + D A  L   M+  G  P+  T+ 
Sbjct: 549 DDHTYGTLVQILC-RSDVDAAWDLLQEMMRNGHTPNEFTFK 588


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 153/322 (47%), Gaps = 16/322 (4%)

Query: 169 IKVKTQPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNIL-------GM- 219
           I+    P++   N L+  LCK   +V+  + + K V   ++P+  TYN L       GM 
Sbjct: 278 IREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGML 337

Query: 220 QTLEEMIQ----MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           Q  E+++Q     G  PD FTY + I+  C+   +  A  LF     KG     PT   Y
Sbjct: 338 QNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGL---KPTVILY 394

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            ++I  L Q   + +   ++  M  +GC  D+ TY  V+ G+C  G V +A   + +   
Sbjct: 395 NMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIA 454

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KGY PD+ T+N  +   C     +  +++  +M   G  P V TYN +++   +  + + 
Sbjct: 455 KGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNED 514

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
             ET+  M ++GC  +  TY ++ + L    KV EA  L++E++NKG+      F + + 
Sbjct: 515 LMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIIS 574

Query: 456 QLSVIGDLGAIHKLSDHMRKFY 477
             +  GDL   ++L   M + Y
Sbjct: 575 GFANNGDLKGAYQLFRRMGEQY 596



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 144/312 (46%), Gaps = 29/312 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + + +++   P+++  N LL  LCK G V  +E    R+ NKV                 
Sbjct: 204 FNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESE----RLLNKV----------------- 242

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
            ++ G   + FT+N  I   C+  M++ A  + + +  +G T   P   TY  +I  L +
Sbjct: 243 -LKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLT---PDVVTYNTLICGLCK 298

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           N  + E    L  ++N G  PD  TY  +++G C  G ++ A K L+    KG+ PD  T
Sbjct: 299 NSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFT 358

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +  LC N   D AL L+   +  G  P+V  YNMLI    + G    A +  +EM 
Sbjct: 359 YCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMS 418

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF----DSYLMQLSVI 460
           + GC+ D+ TY ++I+GL     V +A  L+ + + KG       F    D Y  QL + 
Sbjct: 419 ENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKME 478

Query: 461 GDLGAIHKLSDH 472
             +  ++K+  H
Sbjct: 479 TTIQILNKMWSH 490



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 136/319 (42%), Gaps = 52/319 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   N+L+  LC+ GL+  A + + +  +N    +  TYN++               
Sbjct: 388 KPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANN 447

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + + I  G+ PD FT+NT ID +CK   +     +   M + G T   P   TY  ++ 
Sbjct: 448 LMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVT---PDVITYNSVLN 504

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  + E+       M+  GC+P+  TY  + E +C AGKV EA   ++E+ NKG  P
Sbjct: 505 GLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITP 564

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----------------------------- 371
           D V++   +    +N +   A +L+ RM E                              
Sbjct: 565 DTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKL 624

Query: 372 -------GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
                  GC P   TY ++I  +   G  D  ++   EM ++G    + T+  +I+ L  
Sbjct: 625 FLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCV 684

Query: 425 CSKVEEACFLLEEVVNKGL 443
             +V EA  ++  +V+ G+
Sbjct: 685 QHRVHEAVDIIHFMVHNGI 703



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 104/249 (41%), Gaps = 46/249 (18%)

Query: 175 PEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYN-ILG-----------MQT 221
           P++   N L+D  CK   +    + + K   + V P+  TYN +L            M+T
Sbjct: 459 PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMET 518

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---STIS---------- 268
            E M++ G  P+  TYN   ++ CKA  V EA DL + +  KG    T+S          
Sbjct: 519 FETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFAN 578

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                               S T  TY IMI A  +   +     L   M   GC PD  
Sbjct: 579 NGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTY 638

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ +++G C+ G  +  YKFL EM  KG+ P + T+   +  LC      EA+ +   M
Sbjct: 639 TYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFM 698

Query: 369 IEVGCWPSV 377
           +  G  P V
Sbjct: 699 VHNGIVPEV 707



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 3/213 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P   +YN  ++   ++    +A  +F  M+  G     P   T+ I I +  +  R    
Sbjct: 109 PSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIV---PDVYTFTIRIKSFCRTKRPHSA 165

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             LL +M++ GC  +   Y  V+ G        EAY+   +M   G  PD+ T+N  L  
Sbjct: 166 LRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHT 225

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC      E+ RL  ++++ G   ++ T+N+ I      G   GA      + + G   D
Sbjct: 226 LCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPD 285

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           V TY  +I GL   S V EA   L ++VN GL+
Sbjct: 286 VVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLE 318



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +++E   +   M    C P V +Y  ++  +  +G  ++A+K    M N G  PD+ T+ 
Sbjct: 91  KVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFT 150

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +K  C  K    ALRL   M+  GC  +   Y  +++ ++E      A+E +++M + 
Sbjct: 151 IRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRI 210

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GA 465
           G   DV T+  ++  L    +V+E+  LL +V+ KG+      F+ ++  L   G L GA
Sbjct: 211 GIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGA 270

Query: 466 IHKLSDHMRKFYNP 479
           +  L   +R+   P
Sbjct: 271 MSMLDSVIREGLTP 284



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%)

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GKV+EA    E M      P +++YN  + +L ++    +A +++ RM  VG  P V T+
Sbjct: 90  GKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTF 149

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            + I  +     P  A    + M  +GC  +   YC ++ G ++ +   EA  L  +++ 
Sbjct: 150 TIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLR 209

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            G+      F+  L  L   G++    +L + + K
Sbjct: 210 IGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLK 244



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 21/185 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPN-----------ANTYNILG---- 218
           P     N+L ++LCK G V+ A  +   + NK + P+           AN  ++ G    
Sbjct: 529 PNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQL 588

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + + E  ++ H     TYN  I+ F +   +     LF  M   G    +P   TY +M
Sbjct: 589 FRRMGEQYKVSHTTA--TYNIMINAFAEKLDLHMGEKLFLEMGAGGC---APDTYTYRVM 643

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I         +  +  L  MI  G +P ++T+  V+  +C+  +V EA   +  M + G 
Sbjct: 644 IDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGI 703

Query: 339 PPDIV 343
            P++V
Sbjct: 704 VPEVV 708


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 25/312 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKC------GLVDYAETICKRVKNKVKPNANTYNIL- 217
           ++ + +V+ +P + A N +L AL +         +D   +I   V  ++ PN  T+N+L 
Sbjct: 155 HSLRRRVRVRPSLQAANAVLSALARSPSTSPQASLDAFRSI---VALRLHPNHYTFNLLV 211

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       + TL  M   G +PD  TYNT ++  C+  M+ EA  L   M+  G  
Sbjct: 212 HTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDG-- 269

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             +PT  TY  ++ A  +   +++   ++  M  +G  PD+ TY  +  G+C AGKV+EA
Sbjct: 270 -VAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEA 328

Query: 327 YKFLEEMGNKG-YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           ++  +EM   G   PD+VTYN         +   +ALRL   M E G   ++ T+N++I 
Sbjct: 329 FRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIK 388

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
              + GE +GA    ++M   G A DV TY  +I        + +A  L++E+V +GLKL
Sbjct: 389 GLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKL 448

Query: 446 PYRKFDSYLMQL 457
                ++ L  L
Sbjct: 449 DTFTLNTVLYNL 460



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 18/299 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P++   N L+ A CK G +  A T+    V+  +K +  T N +                
Sbjct: 413 PDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGL 472

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+   Q G  PD  +Y T +  + K      A  L++ M  K  T   P+  TY  +I  
Sbjct: 473 LQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLT---PSISTYNTLIKG 529

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R++E    L  ++  G +PD +TY  ++   C  G +E A++F  +M    + PD
Sbjct: 530 LSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPD 589

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VT N  +  LC N   D+AL+L+   +E G    V TYN LI    + G+ D A   + 
Sbjct: 590 VVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFA 649

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           +M+ RG   D  TY V++  L +  + EEA  +L ++   G     + F S L++ S +
Sbjct: 650 DMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTL--SQSFSSPLLKPSSV 706



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILG------------MQT 221
           P     N L+ A  + G +  A  + + +  N  +P+  TYN+L              + 
Sbjct: 272 PTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRL 331

Query: 222 LEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            +EM ++G   PD  TYNT  D   K R  ++A  L E MR KG      T  T+ I+I 
Sbjct: 332 KDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKA---TLVTHNIVIK 388

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++  +E     L  M + G  PDV TY  ++   C AG + +AY  ++EM  +G   
Sbjct: 389 GLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKL 448

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D  T N  L  LC  K  +EA  L     + G  P   +Y  +++ YF+    + A   W
Sbjct: 449 DTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLW 508

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM ++     + TY  +I GL    +++EA   L E++ KGL
Sbjct: 509 DEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGL 551



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 38/263 (14%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++  +EMI+    P   TYNT I    +   + EA D    +  KG     P   TY I
Sbjct: 504 ALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLV---PDDTTYNI 560

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I A  +   +E  F     M+ +   PDV T   ++ G+CL GK+++A K  E    KG
Sbjct: 561 IIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKG 620

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              D++TYN  ++ +C + + D AL  +  M   G  P   TYN+++S   E G  + A 
Sbjct: 621 KKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQ 680

Query: 398 ETWHEMDKRG--------------------CAQDVDT---------------YCVMIDGL 422
              H++ + G                      +D  T               Y  +++GL
Sbjct: 681 NMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGL 740

Query: 423 FDCSKVEEACFLLEEVVNKGLKL 445
               + +EA  +L+E++ KG+ +
Sbjct: 741 CTSGQFKEAKAILDEMMQKGMSV 763



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 90/219 (41%)

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +G+ P     + A+  + + R+   AA L   +R +     S  A    +  +A   +  
Sbjct: 125 LGNLPSTPLADAALSAYSRLRLPHLAAQLLHSLRRRVRVRPSLQAANAVLSALARSPSTS 184

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +        ++     P+  T+  ++   C  G + +A   L  M   G  PD VTYN 
Sbjct: 185 PQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNT 244

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L   C      EA  L  RM + G  P+  TYN L+S Y  LG    A +    M   G
Sbjct: 245 LLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANG 304

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
              D+ TY V+  GL    KV+EA  L +E+   G  LP
Sbjct: 305 FEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLP 343



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 104/267 (38%), Gaps = 50/267 (18%)

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           ++ K+ P+ +TYN L             +  L E+++ G  PD+ TYN  I  +CK   +
Sbjct: 512 IEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDL 571

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
             A   F+F          P   T   ++  L  N ++++   L    +  G   DV TY
Sbjct: 572 ENA---FQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITY 628

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++ MC  G V+ A  F  +M  +G  PD  TYN  L  L +    +EA  +  ++ E
Sbjct: 629 NTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAE 688

Query: 371 VGCW----------PSV-------------------------QTYNMLISMYFELGEPDG 395
            G            PS                          + Y  L++     G+   
Sbjct: 689 SGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKE 748

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGL 422
           A     EM ++G + D  TY  +++GL
Sbjct: 749 AKAILDEMMQKGMSVDSSTYITLMEGL 775



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 51/226 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N+++ A CK G ++ A +   K V+N  KP+  T N L             ++ 
Sbjct: 553 PDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKL 612

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E  ++ G   D  TYNT I T CK   V  A   F  M  +G     P A TY +++ A
Sbjct: 613 FESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGL---QPDAFTYNVVLSA 669

Query: 282 LVQNDRMEECFSLLGHMINSGCLP--------------------DVSTYKEVLE------ 315
           L +  R EE  ++L  +  SG L                     D  T +E +E      
Sbjct: 670 LSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSA 729

Query: 316 ---------GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
                    G+C +G+ +EA   L+EM  KG   D  TY   ++ L
Sbjct: 730 SEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGL 775



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 45/189 (23%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           +P++   N L++ LC  G +D A  + +  V+   K +  TYN L             + 
Sbjct: 587 KPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALH 646

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS---TISSP------- 270
              +M   G  PD FTYN  +    +A    EA ++   +   G+   + SSP       
Sbjct: 647 FFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSV 706

Query: 271 ----------------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                  ++ Y  ++  L  + + +E  ++L  M+  G   D S
Sbjct: 707 DEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSS 766

Query: 309 TYKEVLEGM 317
           TY  ++EG+
Sbjct: 767 TYITLMEGL 775


>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
 gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
          Length = 1070

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 140/325 (43%), Gaps = 51/325 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-----KNKV-KPNANTYNILGMQTL 222
           I+   +P  ++ N+++  LCK   +D A  + K +     K K+   N   + +  M  L
Sbjct: 432 IREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRL 491

Query: 223 EE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           EE       M  +G  P  FTYN+     C+ +    A DL   M+T G     P  K  
Sbjct: 492 EEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGH---PPWIKNC 548

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-------------- 321
             M+  L  + R+ E    L  M+  G LPD+ TY   + GMC  G              
Sbjct: 549 TEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISC 608

Query: 322 ---------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                                K++EA K +EEM  KG  P +VTYN  + V C     ++
Sbjct: 609 KYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEK 668

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+    +M+     P+V TY  LI  +   G PD A + W EM ++GCA +   Y   I+
Sbjct: 669 AISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFIN 728

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
           GL  C ++E A    EE+V KG +L
Sbjct: 729 GLRKCGRIETALTYFEEMVTKGFEL 753



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 92/452 (20%), Positives = 169/452 (37%), Gaps = 60/452 (13%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS---- 127
           L  L   LT  +   VL R     + A  FF WA  Q  + H   + N M  +L      
Sbjct: 62  LRRLAAELTAPAAESVLLRLP-SWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRA 120

Query: 128 --TKYKAKQFRLVCSM----LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALN 181
              +  A      C M    L ++ R        D  +        +      P     N
Sbjct: 121 HLDRLAADAISARCLMTPGALGFLLRCLGAAGLPDTAVRAFD--AARASFGCTPNSYTYN 178

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNILGM--------------QTLEEMI 226
            LLDAL K G  D A+   + +  +    + + Y +  +                 + M 
Sbjct: 179 CLLDALAKAGRADDAQARLREMVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMS 238

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           ++G   D     T +  F K   V  A +L   M   G  +S    KT ++++    +  
Sbjct: 239 ELGWV-DEHVLTTLMVAFSKWGKVDGAVELLGSMEALGMRLSE---KTLSVLVHGFTKQG 294

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+++   +   M++ G + D++ Y  ++EG+C    +  A K  +EM + G  PD+    
Sbjct: 295 RVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLK 354

Query: 347 CFLKVLCDNKNGDEALRLYGRMIE-----VGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             ++  C  + GD A  + G  I      +     V  YN+++      GE + A++   
Sbjct: 355 KVIEAFC--REGDFA--VIGPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLR 410

Query: 402 EM---------DKRGCAQ----------DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            M         D  G A           + D++ +++ GL    K++ A  L +++++ G
Sbjct: 411 SMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLG 470

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
            K     F+  + +L  +  L   + + + M+
Sbjct: 471 CKGKILMFNDLIHELCNMDRLEEGYGIFNQMK 502


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 156/370 (42%), Gaps = 53/370 (14%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----------- 217
           +K    P +  +N+ +   C+  +++ A  +   V   + P+  TYN L           
Sbjct: 243 LKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVV 302

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                L +M+  G+ PD FTYN+ ID +CK  M+  A  +      KG     P   TY 
Sbjct: 303 EAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFV---PDESTYC 359

Query: 277 IMIVALVQ-----------NDRME------------------------ECFSLLGHMINS 301
            +I  L Q           N+ ME                        +   L+  M  +
Sbjct: 360 SLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSEN 419

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           GC PD+ TY  V+ G+C  G V +A   + +   KG+ PD+ T+N  +   C     D A
Sbjct: 420 GCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNA 479

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + +  RM   G  P V TYN +++   + G+ +    T+  M ++GC  ++ TY ++ + 
Sbjct: 480 IEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTES 539

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL---SDHMRKFYN 478
                KVEEA  L+EE+ NKGL      F + +      GDL   ++L    D   KF +
Sbjct: 540 FCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSH 599

Query: 479 PVIARRLALN 488
            +    + +N
Sbjct: 600 TIATYNIMIN 609



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 134/278 (48%), Gaps = 26/278 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E + +   P+I A N L+  LC+ G V  +E    R+ NKV                 
Sbjct: 204 FEEMLGLGICPDIMAFNKLIHTLCRKGHVQESE----RLLNKV----------------- 242

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
            ++ G +P+ FT N  I  FC+  M+ EA  L + +  +G T   P   TY  +I  L +
Sbjct: 243 -LKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGV-GRGLT---PDVITYNTLICGLCK 297

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           N ++ E    L  M+N G  PD  TY  +++G C  G ++ A + L +   KG+ PD  T
Sbjct: 298 NFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDEST 357

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +  LC + + D A+ ++   +E G  P++   N L+    + G    A +  +EM 
Sbjct: 358 YCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMS 417

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + GC+ D+ TY ++I+GL     V +A  L+ + + KG
Sbjct: 418 ENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKG 455



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 61/323 (18%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
           ++L  LK   E  +    P+I   NL+++ LCK G V  A+ +                 
Sbjct: 405 LILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNL----------------- 447

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                + + I  GH PD FT+NT ID +CK   +  A ++ + M   G    SP   TY 
Sbjct: 448 -----VIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGV---SPDVITYN 499

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L +  + E+       M+  GC+P++ TY  + E  C A KVEEA   +EEM NK
Sbjct: 500 SILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNK 559

Query: 337 GYPPDIV------------------------------------TYNCFLKVLCDNKNGDE 360
           G  PD+V                                    TYN  +       N + 
Sbjct: 560 GLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNM 619

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A +L+ +M E G  P   TY ++I  + + G  +  +       ++G    + T+  +++
Sbjct: 620 AEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLN 679

Query: 421 GLFDCSKVEEACFLLEEVVNKGL 443
            L    +V EA  ++  +V+KG+
Sbjct: 680 CLCLKRRVHEAVGIIHLMVHKGI 702



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 158/386 (40%), Gaps = 34/386 (8%)

Query: 85  VGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY 144
           V  + ++Q     A   F     +D + H  L Y  MI+ L        +F  +  +L  
Sbjct: 10  VAAVVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGF----HGEFEAMEEVLAE 65

Query: 145 MKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCG 191
            + N    +   V +  ++ Y  K K++              +P + + N +++ L +  
Sbjct: 66  TRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYR 125

Query: 192 LVDYAETICKRVKNK-VKPNANTYNI------------LGMQTLEEMIQMGHAPDNFTYN 238
             D A  +  R+++K + P+  T+ I               + L  M   G       Y 
Sbjct: 126 YFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYC 185

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
           T I  F +     EA +LFE M   G     P    +  +I  L +   ++E   LL  +
Sbjct: 186 TVIGGFYEENHRVEAHELFEEMLGLGI---CPDIMAFNKLIHTLCRKGHVQESERLLNKV 242

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
           +  G  P++ T    ++G C    + EA + L+ +G +G  PD++TYN  +  LC N   
Sbjct: 243 LKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVG-RGLTPDVITYNTLICGLCKNFKV 301

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
            EA     +M+  G  P   TYN +I  Y +LG    A +   +   +G   D  TYC +
Sbjct: 302 VEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSL 361

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLK 444
           I+GL     ++ A  +  E + KGLK
Sbjct: 362 INGLCQDGDIDRAINVFNEAMEKGLK 387



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 101/249 (40%), Gaps = 46/249 (18%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN-ILG-----------MQT 221
           P++   N L+D  CK   +D A  I  R+ N  V P+  TYN IL            M T
Sbjct: 458 PDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGT 517

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
            + M++ G  P+  TYN   ++FCKAR V EA +L E M+ KG T               
Sbjct: 518 FKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCD 577

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                               S T  TY IMI A      M     L   M  +G  PD  
Sbjct: 578 NGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSY 637

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ +++G C  G +   Y FL     KG  P + T+   L  LC  +   EA+ +   M
Sbjct: 638 TYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLM 697

Query: 369 IEVGCWPSV 377
           +  G  P V
Sbjct: 698 VHKGIVPEV 706



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 271 TAKTYAIMIVALV---QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
           T  TY  MI  L    + + MEE  +     I++G L  V  Y   +      GK++EA 
Sbjct: 39  TLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGV--YIGAMRNYGRKGKIQEAV 96

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              E M      P + +YN  + +L + +  D+A ++Y RM + G  P V T+ + +  +
Sbjct: 97  DVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSF 156

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
                P  A    + M  +GC      YC +I G ++ +   EA  L EE++  G+    
Sbjct: 157 CRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDI 216

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLR 497
             F+  +  L   G +    +L        N V+ R ++ N   V I ++
Sbjct: 217 MAFNKLIHTLCRKGHVQESERL-------LNKVLKRGVSPNLFTVNIFIQ 259



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 83/221 (37%), Gaps = 52/221 (23%)

Query: 173 TQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GM 219
             P++   N +L+ LCK G   D   T    ++    PN  TYNIL             +
Sbjct: 491 VSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEAL 550

Query: 220 QTLEEMIQMGHAPD--NF----------------------------------TYNTAIDT 243
             +EEM   G  PD  NF                                  TYN  I+ 
Sbjct: 551 NLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINA 610

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           F     +  A  LF  M   G    SP + TY +MI    +   +   +S L   I  G 
Sbjct: 611 FAGKLNMNMAEKLFNKMCENGF---SPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGL 667

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           +P ++T+  VL  +CL  +V EA   +  M +KG  P++V 
Sbjct: 668 IPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVN 708


>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 187/415 (45%), Gaps = 48/415 (11%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           D   ++  +V  L +   D+S     +E AL    + LT D V+ VL+R + + + A+ F
Sbjct: 81  DPDGETALEVQNLLKTYRDSS--VSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVF 138

Query: 102 FMWA---GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
           F WA   G +  Y+     +N ++DIL     + ++F  +  + D M +  K  V     
Sbjct: 139 FNWASRCGIESGYSPGCGVHNEILDILG----RMRRFHEMTQLFDEMSKR-KGLVNERTF 193

Query: 159 LMILKQY-----TEKIKVK-----TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK 208
            ++L +Y     TE+  VK         I ++N++L+  C  G +  A    KR  N   
Sbjct: 194 GVLLNRYAAAHKTEEAAVKIFYKRKGAWIRSMNVILNGWCVLGSLREA----KRFWN--- 246

Query: 209 PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                          ++I     PD FTY   I++  KA  ++ A  LF+ M  KG    
Sbjct: 247 ---------------DIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGC--- 288

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P       +I AL    R+ E   +L  M    C PDV+TY  +++ +C   + E+ Y+
Sbjct: 289 NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYE 348

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L++M  KG  P+  TY   LK     K  +E   +  RM   GC  +   YN+++ +Y 
Sbjct: 349 LLDDMEQKGCLPNARTYGYLLK---STKKPEEVPGILERMERNGCRMNSDCYNLILKLYM 405

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + G       T  EM++ G   D  TY +MI GL+D  ++++A    +++   G+
Sbjct: 406 DWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGM 460



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 12/250 (4%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q  +EM +     +  T+   ++ +  A    EAA    F + KG+ I S       +++
Sbjct: 176 QLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAAVKI-FYKRKGAWIRS-----MNVIL 229

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                   + E       +I S C PD  TY   +  +  AGK+  A K  + M  KG  
Sbjct: 230 NGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCN 289

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+   NC +  LC  K   EAL +   M E  C P V TYN LI    ++   +  +E 
Sbjct: 290 PDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYEL 349

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             +M+++GC  +  TY  ++       K EE   +LE +   G ++     D Y + L +
Sbjct: 350 LDDMEQKGCLPNARTYGYLLKS---TKKPEEVPGILERMERNGCRM---NSDCYNLILKL 403

Query: 460 IGDLGAIHKL 469
             D G   KL
Sbjct: 404 YMDWGYELKL 413



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/250 (19%), Positives = 96/250 (38%), Gaps = 41/250 (16%)

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           I+ G++P    +N  +D   + R   E   LF+ M  +   ++    +T+ +++      
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNE---RTFGVLLNRYAAA 203

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            + EE    + +      +  ++    +L G C+ G + EA +F           DI+T 
Sbjct: 204 HKTEEAAVKIFYKRKGAWIRSMNV---ILNGWCVLGSLREAKRFWN---------DIITS 251

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
            C                           P   TY + I+   + G+   A + +  M +
Sbjct: 252 KCK--------------------------PDKFTYGIFINSLTKAGKLSTAVKLFQAMWE 285

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           +GC  DV     +ID L    ++ EA  +L E+  +  +     ++S +  L  I     
Sbjct: 286 KGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEK 345

Query: 466 IHKLSDHMRK 475
           +++L D M +
Sbjct: 346 VYELLDDMEQ 355


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 179/443 (40%), Gaps = 69/443 (15%)

Query: 92  QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY----------------KAKQF 135
           Q +E++A  FF W+  Q  Y H+P+ Y +M+D+LS TK                 +    
Sbjct: 60  QSDERVALDFFFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQ 119

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195
              C M+ Y  R  K+   + VL M+ K   E       P +   N  +  L    +++ 
Sbjct: 120 DFCCVMVSY-SRAGKLRNAMQVLTMMQKAGIE-------PNLLVCNTAIHVLVMANMLEK 171

Query: 196 AETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           A    +R++   + PN  TYN L             M+ + EM   G +PD  +Y T + 
Sbjct: 172 ALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMG 231

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKT---------------------------- 274
             CK R + E  D+ E M          T  T                            
Sbjct: 232 FLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQV 291

Query: 275 ----YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
               Y+ ++ +  +  RM++   ++  M   GC+PDV TY  ++ G   AG+V +A K L
Sbjct: 292 DKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKML 351

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           ++M   G  P+ V+Y  FLK LC   N  EA  +     E    P+  TY++++  +   
Sbjct: 352 QQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRRE 411

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+   A +   EM  +G         +++  L    +V+EA   +EE +N G  +    F
Sbjct: 412 GKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNF 471

Query: 451 DSYLMQLSVIGDLGAIHKLSDHM 473
            + + +     D+ A   L D M
Sbjct: 472 TTVIHRFCQQDDIEAALSLLDDM 494



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 129/300 (43%), Gaps = 18/300 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           ++D+ CK G +D A+ I   +  +   P+  TY  +              + L++M + G
Sbjct: 299 IVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHG 358

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  +Y   +   C+    +EA    E M+       +P A TY++++    +  ++ 
Sbjct: 359 CKPNTVSYTAFLKGLCQKGNSSEAR---EMMKASEEQWWTPNAITYSVVMHGFRREGKLS 415

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   ++  MI  G  P       +L+ +C  G+V+EA KF+EE  N G   + V +   +
Sbjct: 416 DACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVI 475

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C   + + AL L   M      P   TY  +I    + G  + A E   +M K+G  
Sbjct: 476 HRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGID 535

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
               TY  +I       +VE+   LL++++ +  +     F+  + +L   G+L A  KL
Sbjct: 536 PTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTR--QECRTAFNQVIEKLCTFGNLEAADKL 593



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 3/233 (1%)

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           ++ +A  +  A  +   M+  G     P        I  LV  + +E+    L  M   G
Sbjct: 127 SYSRAGKLRNAMQVLTMMQKAGI---EPNLLVCNTAIHVLVMANMLEKALRFLERMQLLG 183

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
            +P+V TY  +++G C   +VE+A + + EM  KG  PD V+Y   +  LC N+   E +
Sbjct: 184 IMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVM 243

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +  +M +        TYN LI M  +    D A +   E  KRG   D   Y  ++D  
Sbjct: 244 DVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSY 303

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
               ++++A  ++ E+  +G       + + +   S  G++G   K+   M K
Sbjct: 304 CKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYK 356



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 90/246 (36%), Gaps = 53/246 (21%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P    +NLLL +LC+ G VD A+   +   N     NA  +  +             +  
Sbjct: 431 PTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSL 490

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L++M      PD  TY T ID   K   + EA +L   M  KG     PT  TY  +I  
Sbjct: 491 LDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGI---DPTPVTYRTVIHR 547

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL----------- 330
             Q  R+E+  +LL  M+        + + +V+E +C  G +E A K L           
Sbjct: 548 YGQIGRVEDLLNLLDKMLTRQ--ECRTAFNQVIEKLCTFGNLEAADKLLGKVLRTASRID 605

Query: 331 --------EEMGNKGYP----------------PDIVTYNCFLKVLCDNKNGDEALRLYG 366
                   E    KG P                PD+       K L      +EA  L+ 
Sbjct: 606 ANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEADNLFL 665

Query: 367 RMIEVG 372
           R +E G
Sbjct: 666 RFVERG 671


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 142/297 (47%), Gaps = 18/297 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L+ Y  K+      ++ + +  ++ LCK G +  A  I + ++ K   P++ TYNIL   
Sbjct: 76  LRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILING 135

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G+  ++EM   G +P   TY T I  FC A  V  A D+ + M  +G T  
Sbjct: 136 LCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGIT-- 193

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEA 326
            P   TY  +I  L     +E    +L  M   G  C P+V TY +++ G+C  G  E  
Sbjct: 194 -PNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMG 252

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +FL+EM   G  P+  TY   +  LC   +  EA  L   M+ +GC   V  YN LI  
Sbjct: 253 MEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDG 312

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             ++GE D A E    M ++G A DV TY  +I GL D   ++EA  L++E+  KG+
Sbjct: 313 LCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGI 369


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 150/313 (47%), Gaps = 18/313 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P + A N L+  LC  G +  A ++  ++ +N   PN +TY  L              +
Sbjct: 351 EPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASE 410

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M+  G  P+   Y + ++  C++ M ++A  L E M T       P   T+   I 
Sbjct: 411 IWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNC---PPNTVTFNTFIK 467

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + R+E   +L   M   GC P++ TY EVL+G+    +++EA + + EM  KG   
Sbjct: 468 GLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMEL 527

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN      C+    +EAL+L G+M+  G  P   TYN L   Y   G+   A +  
Sbjct: 528 NLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLL 587

Query: 401 HEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-S 458
            ++   G    +V  Y  ++ G+ +   VEEA   L++++N+G+ L    +++ +  L +
Sbjct: 588 DKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFN 647

Query: 459 VIGDLGAIHKLSD 471
            +G LG IH L D
Sbjct: 648 SLGHLGPIHILDD 660



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 149/325 (45%), Gaps = 11/325 (3%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--I 216
           MI   Y+   +   +P +   N+LL ALCK   VD A  +   + NK  +P+  +Y   I
Sbjct: 167 MIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVI 226

Query: 217 LGMQTLEEM-----IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
             M  L ++     + +   P+   YN  I+ FC+   V E   L   M  KG     P 
Sbjct: 227 SSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGI---DPN 283

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY+ +I +L     +E   ++   M   GC P+V T+  +++G  + G+V EA     
Sbjct: 284 VITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWN 343

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  +G+ P++V YN  +  LC +    EA+ +  +M   GC P+V TY  LI  + + G
Sbjct: 344 RMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG 403

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           +  GA E W++M   GC  +V  Y  M++ L   S   +A  L+E++           F+
Sbjct: 404 DLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFN 463

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKF 476
           +++  L   G +     L   M ++
Sbjct: 464 TFIKGLCCSGRVECAINLFCQMEQY 488



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 146/333 (43%), Gaps = 23/333 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANT 213
           V  + ++L Q  EK      P +   + ++ +L   G V+ A  +  K       PN  T
Sbjct: 265 VKEVFLLLGQMVEK---GIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYT 321

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +  L             +     M + G  P+   YNT I   C    + EA  +   M 
Sbjct: 322 FTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKME 381

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G    SP   TY  +I    +   +     +   M+ +GC+P+V  Y  ++  +C + 
Sbjct: 382 RNGC---SPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSS 438

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
              +A+  +E+M     PP+ VT+N F+K LC +   + A+ L+ +M + GC P+++TYN
Sbjct: 439 MFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYN 498

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            ++    +      A E   EM+++G   ++ TY  +  G  +  K EEA  LL +++  
Sbjct: 499 EVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVG 558

Query: 442 GLK---LPYRKFD-SYLMQLSVIGDLGAIHKLS 470
           G+K   + Y     +Y MQ  V   +  + KLS
Sbjct: 559 GVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLS 591


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 152/337 (45%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E +++   P I   N L+  LC+ GL +   E + + V++   P+   Y  +        
Sbjct: 289 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEG 348

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  P+   YNT +   C A    E  +L   M  K   +      
Sbjct: 349 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD---V 405

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M+  GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 406 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 465

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P+ ++Y   LK LC  +   +A  L  +MI+ GC  +  T+N LI+   + G  
Sbjct: 466 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 525

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K +EA  LL  +VNKG+      + S 
Sbjct: 526 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 585

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 586 ASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS 622



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----------QTL 222
           ++   NL+L+A+C  G VD A  + + + +   +P+  +YN +  G+          + +
Sbjct: 228 DVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELM 287

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EEM++M   P+  T+NT I   C+  +     ++   M   G T   P  + YA +I  +
Sbjct: 288 EEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCT---PDIRMYATIIDGI 344

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   +E    +L  M + G  P+V  Y  +L+G+C A + EE  + L EM +K  P D 
Sbjct: 345 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 404

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VT+N  +   C N   D  + L  +M+E GC P V TY  +I+ + + G  D A      
Sbjct: 405 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 464

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           M   GC  +  +Y +++ GL    +  +A  L+ +++ +G  L    F++ +
Sbjct: 465 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLI 516



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 16/276 (5%)

Query: 180 LNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
            N+L+D  C+ GLVD   E + + +++   P+  TY  +             +  L+ M 
Sbjct: 407 FNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 466

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  P+  +Y   +   C A    +A DL   M  +G  ++  T  T   +I  L +  
Sbjct: 467 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNT---LINFLCKKG 523

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +E+   LL  M+ +GC PD+ +Y  V++G+  AGK +EA + L  M NKG  P+ + Y+
Sbjct: 524 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 583

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                L      ++ ++++  + +         YN +IS   + GE + A E    M   
Sbjct: 584 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 643

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           GC  +  TY ++I GL     V+EA  +L E+ +KG
Sbjct: 644 GCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 679



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 17/277 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N ++   C+ G ++ A  +   V   V PNA TY  +             +  L+EM + 
Sbjct: 131 NAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPRR 188

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G AP    Y+  ++  C+      A  + E +  +G  +         +++ A+     +
Sbjct: 189 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN---LVLNAICDQGSV 245

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E   LL  + + GC PDV +Y  VL+G+C+A +     + +EEM     PP+IVT+N  
Sbjct: 246 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 305

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC N   +    +  +M+E GC P ++ Y  +I    + G  + A E  + M   G 
Sbjct: 306 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGL 365

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             +V  Y  ++ GL    + EE   LL E+ +K   L
Sbjct: 366 KPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPL 402



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 23/296 (7%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++ Y+ RN  +F  V  +L       + ++    P+I     ++D +CK G ++ A  I
Sbjct: 304 TLISYLCRNG-LFERVHEVL------AQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI 356

Query: 200 CKRVKN-KVKPNANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             R+ +  +KPN   YN L  G+          + L EM       D+ T+N  +D FC+
Sbjct: 357 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 416

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
             +V    +L E M   G     P   TY  +I    +   ++E   LL  M   GC P+
Sbjct: 417 NGLVDRVIELLEQMLEHGCM---PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 473

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             +Y  VL+G+C A +  +A   + +M  +G P + +T+N  +  LC     ++A+ L  
Sbjct: 474 TISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLK 533

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +M+  GC P + +Y+ +I    + G+ D A E  + M  +G + +   Y  +   L
Sbjct: 534 QMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 589



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 3/170 (1%)

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ G C AG++E A +    +     PP+  TY   ++ LC      +AL +   M 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             GC P    Y++++      G    A     ++  RGCA DV    ++++ + D   V+
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 246

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           EA  LL ++ + G +     +++ L  L +    G + +L + M +   P
Sbjct: 247 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 296


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 187/430 (43%), Gaps = 47/430 (10%)

Query: 82  DSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM 141
           D  V VL  F+   ++A R F WA  Q  +      +  +++IL+        + ++  +
Sbjct: 82  DLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERV 141

Query: 142 LDY-MKRNNKVF--------VPVDVLLMILKQYTEK-------------IKVKTQPEINA 179
           ++  M R   V         V V +L +++  Y++K             IK +  P++  
Sbjct: 142 INANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKN 201

Query: 180 LNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMI 226
            N +L  L    L+  A  + + +    +KP   TYN L            G+  L EM 
Sbjct: 202 CNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQ 261

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G AP++ TYN  I+   K     +A  L   M   G  +S   A TY  +I       
Sbjct: 262 RRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVS---AYTYNPLIYGYFNKG 318

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            + E  SL   M+  G  P V+TY   + G+C  G++ +A + L +M      PD+V+YN
Sbjct: 319 MLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYN 378

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C   N  +A  L+  +  +  +P++ TYN L+      GE + A +   EM   
Sbjct: 379 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 438

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           G A D+ TY ++++G      +  A    +E++++GL+L     DSY     ++G+L   
Sbjct: 439 GIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLEL-----DSYAYATRIVGEL--- 490

Query: 467 HKLSDHMRKF 476
            KL D  R F
Sbjct: 491 -KLGDTSRAF 499



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 126/269 (46%), Gaps = 25/269 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N LLD LC+ G ++ A+                      Q   EMI  G APD 
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQ----------------------QLKVEMINEGIAPDI 444

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY   ++  CK   ++ A + F+ M  +G  + S     YA  IV  ++       FSL
Sbjct: 445 VTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDS---YAYATRIVGELKLGDTSRAFSL 501

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+  G  PD+  Y  V++G+C  G +EEA + L++M + G  PD VTY   +    +
Sbjct: 502 QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           N    +   ++  M+  G  PSV TY +LI  +   G  + AF  + EM ++G   +V T
Sbjct: 562 NGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVIT 621

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y  +I+GL    ++++A     E+V KG+
Sbjct: 622 YNSLINGLCKVRRMDQAYNFFAEMVEKGI 650



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 143/327 (43%), Gaps = 51/327 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQT--------- 221
           +P I   N LLD+ CK G V     +   ++ +   PN  TYN+L  G+           
Sbjct: 231 KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKG 290

Query: 222 -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM++ G     +TYN  I  +    M+ EA  L E M  KG+   SPT  TY   I 
Sbjct: 291 LIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA---SPTVATYNSFIY 347

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  RM +    L  M+ +  LPDV +Y  ++ G C  G + +A+   +E+ +    P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI---------SM---YF 388
            IVTYN  L  LC     + A +L   MI  G  P + TY +L+         SM   +F
Sbjct: 408 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFF 467

Query: 389 E-----------------------LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           +                       LG+   AF    EM  +G   D+  Y V++DGL   
Sbjct: 468 DEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKL 527

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDS 452
             +EEA  LL+++V+ G+   Y  + S
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTS 554



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 23/276 (8%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETI----------------CKRVKNKVKPN 210
           E I     P+I    +L++  CK G +  A+                    R+  ++K  
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKL- 492

Query: 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
            +T     +Q  EEM+  G  PD   YN  +D  CK   + EA++L + M + G     P
Sbjct: 493 GDTSRAFSLQ--EEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVI---P 547

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY  +I A ++N R+ +   +   M++ G  P V TY  ++ G    G++E A+ + 
Sbjct: 548 DYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYF 607

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM  KG  P+++TYN  +  LC  +  D+A   +  M+E G +P+  +Y +LI+    +
Sbjct: 608 SEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNM 667

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DC 425
           G    A   + +M  RG   D  T+  ++  L  DC
Sbjct: 668 GNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDC 703



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 3/237 (1%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I  + K  MV +   +F+ M     +  SP  K    ++  L   D M +   +   M  
Sbjct: 171 IWVYSKKSMVEQCLSVFDKMI---KSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  P + TY  +L+  C  GKV++    L EM  +G  P+ VTYN  +  L      ++
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 287

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L G M++ G   S  TYN LI  YF  G    A     EM  +G +  V TY   I 
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
           GL    ++ +A   L +++   L      +++ +     +G+L     L D +R  Y
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 404


>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E  + +  P +  LN+++ A CK G ++ A  + KR++     P   +YN L      
Sbjct: 302 YREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCN 361

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+    M + G  PD+ T+NT I+ FC+   + EA  +F  M+        P 
Sbjct: 362 KGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVV---PN 418

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I    Q    E    L   M+ +G   D+ TY  ++ G+C+ G+ ++A   ++
Sbjct: 419 TITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVK 478

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+  +   P+  T++  +   C  KN + A +LY  MI  GC P+  T+ MLIS + +  
Sbjct: 479 ELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNE 538

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + DGA E   EM +R  A D DT   +  GL+   K E A  L +E+  K L
Sbjct: 539 DFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKHL 590



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 3/225 (1%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           +++   T+ + + +  A D+F  M+  G     P  ++    I A +   R +   +   
Sbjct: 247 FDSLFKTYAQMKKLRNAIDVFCQMKDYGFL---PRVESCNAYISASISLQRGDIALTFYR 303

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M      P+V T   V+   C  GK+E+A +  + M   G+ P I +YN  +   C+  
Sbjct: 304 EMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKG 363

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +  ++L   M + G  P   T+N LI+ +   G+   A + + EM       +  TY 
Sbjct: 364 LLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYN 423

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            +I+G       E    L +E++  G+K     +++ ++ L + G
Sbjct: 424 TLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEG 468



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 87/230 (37%), Gaps = 53/230 (23%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL- 217
           M LK   EK  V+  P+    N L++  C+ G +  A  I   +K N V PN  TYN L 
Sbjct: 369 MKLKILMEKNGVR--PDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLI 426

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      G +  +EM++ G   D  TYN  I   C      +AA L + +  +   
Sbjct: 427 NGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLV 486

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK--------------- 311
              P + T++ +I         E  F L   MI SGC P+  T+K               
Sbjct: 487 ---PNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGA 543

Query: 312 --------------------EVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                               E+  G+ L+GK E A K  +EM  K   P+
Sbjct: 544 VEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKHLMPE 593


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 3/246 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G + LE M+  G  PD     + I  FCK     +A  + E +   G+    P   TY +
Sbjct: 103 GFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAV---PDVITYNV 159

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  +    R  +   LL  M+  GC P V T+  ++  +C  G +  A   LE+M   G
Sbjct: 160 LISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHG 219

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ ++YN  L   C  K  + A+   G+M   GC+P + TYN L++   + G+ D A 
Sbjct: 220 CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAV 279

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           E  +++  +GC+  + TY  +IDGL    K ++A  LL+E+  KGLK     + S +  L
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGL 339

Query: 458 SVIGDL 463
           S  G +
Sbjct: 340 SREGKV 345



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 140/282 (49%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N+L+  +C  G  +D  + +   V+    P+  T+NIL             +  
Sbjct: 152 PDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDV 211

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE+M + G  P++ +YN  +  FCK + +  A +    M ++G     P   TY  ++ A
Sbjct: 212 LEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCY---PDIVTYNTLLTA 268

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ +++    LL  + + GC P + TY  V++G+   GK ++A K L+EM  KG  PD
Sbjct: 269 LCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPD 328

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I+TY+  +  L      DEA++ +  +  +G  P+  TYN ++    +  + D A +   
Sbjct: 329 IITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLA 388

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M +RGC     +Y ++I+GL      +EA  LL E+  +G+
Sbjct: 389 YMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 134/283 (47%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------QT 221
           P+I     L+   CK G    A  I + +++    P+  TYN+L  GM          + 
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKL 176

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M++ G +P   T+N  I+  C+  ++  A D+ E M   G T   P + +Y  ++  
Sbjct: 177 LADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCT---PNSLSYNPLLHG 233

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME     LG M + GC PD+ TY  +L  +C  GKV+ A + L ++ +KG  P 
Sbjct: 234 FCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPV 293

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  L      D+A +L   M   G  P + TY+ L+      G+ D A + +H
Sbjct: 294 LITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFH 353

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +++  G   +  TY  ++ GL    K + A   L  +V +G K
Sbjct: 354 DLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCK 396



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 1/201 (0%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+N  +EE F  L  M+  G +PD+     ++ G C  GK  +A + +E + + G  PD
Sbjct: 94  LVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD 153

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  +C      +A +L   M+  GC PSV T+N+LI+     G    A +   
Sbjct: 154 VITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLE 213

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M K GC  +  +Y  ++ G     K+E A   L ++ ++G       +++ L  L   G
Sbjct: 214 KMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDG 273

Query: 462 DL-GAIHKLSDHMRKFYNPVI 481
            +  A+  L+    K  +PV+
Sbjct: 274 KVDAAVELLNQLSSKGCSPVL 294



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           VD  + +L Q + K      P +   N ++D L K G  D A  +   ++ K +KP+  T
Sbjct: 275 VDAAVELLNQLSSK---GCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIIT 331

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L             ++   ++  +G  P+  TYN  +   CKAR    A D   +M 
Sbjct: 332 YSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMV 391

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
            +G     PT  +Y I+I  L      +E   LL  +   G +   S  K
Sbjct: 392 QRGC---KPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEK 438


>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
          Length = 561

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 183/427 (42%), Gaps = 24/427 (5%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           +S   KL    I        +E AL ++G+ LT D V  V  R     +    FF WA  
Sbjct: 99  LSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVK 158

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM-LDYMKRNNKVFVPVDVLLMILKQYT 166
           Q     +   YN++I  L   K+      ++  M +  +  N +    V    +  +Q +
Sbjct: 159 QPTIPKDVDTYNVIIKALGRRKFIEFXVXVLKDMHIQGISPNYETLSIVMDSFIKARQVS 218

Query: 167 EKIKVKTQPE-------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
           + I++    E         +LN+LL  LC+   V  A      +K  +  N  TYNI+  
Sbjct: 219 KAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIG 278

Query: 218 GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
           G           + L+ M+  G +P+  T++  I+   +A  + +A ++F  M   G   
Sbjct: 279 GWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCV- 337

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P A  Y  +I   +     +EC      M++S C P++ TY +++     A KV +A 
Sbjct: 338 --PNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADAL 395

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L+EM  +G  P       F++ LC       A+ +Y +  +VGC  S+  Y +L+   
Sbjct: 396 EMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRL 455

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
              G+       W EM + G + D + Y  +I+GL +  +++ A  ++EE + KG   P 
Sbjct: 456 SRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLXKGF-CPS 514

Query: 448 RKFDSYL 454
           R   S L
Sbjct: 515 RLIRSKL 521


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 48/333 (14%)

Query: 176 EINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           ++ + N++++ LC+C   V     + K +K   +P+  T + L             +  +
Sbjct: 44  DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 103

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------------- 269
            +M +MG  PD   YNT ID  CK  +V +A +LF+ M   G    +             
Sbjct: 104 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS 163

Query: 270 -------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                              P   T+  +I   V+  +  E   L   M      PDV TY
Sbjct: 164 GRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTY 223

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G+C+ G+V+EA + L+ M  KG  PD+VTYN  +   C +K  DE  +L+  M +
Sbjct: 224 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 283

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G      TYN +I  YF+ G PD A E +  MD R    ++ TY +++ GL    +VE+
Sbjct: 284 RGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEK 340

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           A  L E +    ++L    ++  +  +  IG++
Sbjct: 341 ALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 373



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 56/354 (15%)

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197
           V S+++   + N+VF  +D++       ++  ++  +P++   N ++D  CK GLV+ A 
Sbjct: 83  VSSLINGFCQGNRVFDAIDLV-------SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 135

Query: 198 TICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTF 244
            +  R+ ++ V+ +A TYN L              + + +M+     P+  T+   ID F
Sbjct: 136 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 195

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
            K    +EA  L+E M  +      P   TY  +I  L  + R++E   +L  M+  GCL
Sbjct: 196 VKEGKFSEAMKLYEEMTRR---CVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 252

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV------------- 351
           PDV TY  ++ G C + +V+E  K   EM  +G   D +TYN  ++              
Sbjct: 253 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 312

Query: 352 -------------------LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
                              LC N   ++AL L+  M +      + TYN++I    ++G 
Sbjct: 313 FSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGN 372

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            + A++ +  +  +G   DV +Y  MI G     + +++  L  ++   GL LP
Sbjct: 373 VEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL-LP 425



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 10/251 (3%)

Query: 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           +VD+++ + K  K+K     N   ++ +    E+  +GH  D ++YN  I+  C+     
Sbjct: 10  IVDFSKVLSKIAKSK-----NYDLVISLFHHMEVCGIGH--DLYSYNIVINCLCRCSRFV 62

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
            A  +   M   G     P   T + +I    Q +R+ +   L+  M   G  PDV  Y 
Sbjct: 63  IALSVVGKMMKFGY---EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 119

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +++G C  G V +A +  + M   G   D VTYN  +  LC +    +A RL   M+  
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 179

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              P+V T+  +I ++ + G+   A + + EM +R    DV TY  +I+GL    +V+EA
Sbjct: 180 DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEA 239

Query: 432 CFLLEEVVNKG 442
             +L+ +V KG
Sbjct: 240 KQMLDLMVTKG 250



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 3/249 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MIQ    P    ++  +    K++       LF  M   G         +Y I+I  L +
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGI---GHDLYSYNIVINCLCR 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R     S++G M+  G  PDV T   ++ G C   +V +A   + +M   G+ PD+V 
Sbjct: 58  CSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVI 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +   C     ++A+ L+ RM   G      TYN L++     G    A     +M 
Sbjct: 118 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            R    +V T+  +ID      K  EA  L EE+  + +      ++S +  L + G + 
Sbjct: 178 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 237

Query: 465 AIHKLSDHM 473
              ++ D M
Sbjct: 238 EAKQMLDLM 246


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 202/490 (41%), Gaps = 97/490 (19%)

Query: 14  YAVLVRVIR-TKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLY-EAIIDNSNAYDN---M 68
           + V++++ + TK+LQ Y  K PS         S S S   + Y + + +N+N  D+    
Sbjct: 7   FTVMLKIPKFTKNLQ-YFFKTPSF--------SISPSGFNRFYNDTVFNNTNGLDSGTEW 57

Query: 69  EKALDSLGVPLTTDSVVGV-------LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121
           E+ L    +P    S+  +       L     +   +   F WAG Q  Y H    Y ++
Sbjct: 58  ERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGYCHMFDVYYML 117

Query: 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE-------------- 167
           ID L +    A +F+ + ++L  MK+   VF    + ++I+K Y                
Sbjct: 118 IDKLGA----AGEFKTIDALLMQMKQEGIVFRE-SLFILIMKHYGRAGLPGQATRLLLDM 172

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQ 227
           +     +P   + N++LD L            C     KV PN             EM+ 
Sbjct: 173 RGVYSCEPTFRSYNVVLDVLLAGN--------CP----KVVPNV----------FYEMLS 210

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G +P  +T+   +   C    V  A  L + M   G     P A  Y  +I AL +  R
Sbjct: 211 KGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCV---PNAIVYQTLIHALXKVGR 267

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   LL  M+  GC+PDV+T+ + + G+C   ++ EA K ++ M  +G+ P+  TY  
Sbjct: 268 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 327

Query: 348 FLKVLCDNKNGDEALRLYGR--------------------------------MIEVGCWP 375
            +  LC     DEA  L  +                                M+ VGC P
Sbjct: 328 LMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 387

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            + TYN LI    + G    A E  +EM  +GC  +V TY ++ID      ++EEA  +L
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 447

Query: 436 EEVVNKGLKL 445
           +E+  KGL L
Sbjct: 448 DEMSGKGLAL 457



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 16/288 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           + V   P+I   N L+  LCK G +  A  +   ++ K  +PN  TY IL          
Sbjct: 381 LSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRL 440

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 L+EM   G A +   YN  I   CK   V +A ++F  M +KG     P   T+
Sbjct: 441 EEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGC---KPDIFTF 497

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L + ++ EE   L   M+  G + +  TY  ++      G ++EA K + +M  
Sbjct: 498 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 557

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G P D +TYN  +K LC   N ++ L L+  M+  G  P+  + N+LI+     G    
Sbjct: 558 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQH 617

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A E   +M  RG   D+ TY  +I+GL    + +EA  L +++  +G+
Sbjct: 618 ALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 665



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 144/317 (45%), Gaps = 16/317 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTLEEMIQMGHA-- 231
           P++N  N  +  LCK   +  A  +  R +     PN+ TY +L M  L  M ++  A  
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVL-MHGLCRMGKVDEARM 343

Query: 232 -------PDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
                  P+   +NT I+ +  + R+    A + E M + G     P   TY  +I+ L 
Sbjct: 344 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGC---GPDIFTYNTLILGLC 400

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +     L+  M   GC P+V TY  +++  C  G++EEA   L+EM  KG   + V
Sbjct: 401 KKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 460

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            YNC +  LC ++   +AL ++G M   GC P + T+N LI    ++ + + A   + +M
Sbjct: 461 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 520

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              G   +  TY  +I        ++EA  L+ +++ +G  L    ++  +  L   G++
Sbjct: 521 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 580

Query: 464 -GAIHKLSDHMRKFYNP 479
              +    D M K  NP
Sbjct: 581 EKGLALFEDMMSKGLNP 597



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 27/300 (9%)

Query: 163 KQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++   ++++K  +P +    +L+D  CK G ++ A  +   +  K +  NA  YN L   
Sbjct: 409 RELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISA 468

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +    +M   G  PD FT+N+ I   CK     EA  L++ M  +G   +
Sbjct: 469 LCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIAN 528

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +    TY  +I A ++   M+E   L+  M+  GC  D  TY  +++ +C AG +E+   
Sbjct: 529 T---ITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLA 585

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E+M +KG  P+ ++ N  +  LC   N   AL     MI  G  P + TYN LI+   
Sbjct: 586 LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC 645

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMI-----DGLFDCSKVEEACFLLEEVVNKGL 443
           + G    A   + ++   G   D  TY  +I     +G+FD     +A  LL   V+ G 
Sbjct: 646 KTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFD-----DAHLLLSRGVDSGF 700



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 16/234 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
           +P+I   N L+  LCK    + A  + +  +   V  N  TYN L             ++
Sbjct: 491 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 550

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + +M+  G   D+ TYN  I   C+A  + +   LFE M +KG    +P   +  I+I 
Sbjct: 551 LVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL---NPNNISCNILIN 607

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +   ++     L  MI+ G  PD+ TY  ++ G+C  G+ +EA    +++  +G  P
Sbjct: 608 GLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 667

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           D +TYN  +   C     D+A  L  R ++ G  P+  T+ +L+S + + G+ +
Sbjct: 668 DAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 177/428 (41%), Gaps = 62/428 (14%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMID---- 123
           +E AL+ L VP  + +++  + + +   ++ FRFF+WA  ++       ++ L+ID    
Sbjct: 47  IEPALEPL-VPFLSKNIITSVIKEEVNRQLGFRFFIWASRRERLRSGE-SFGLVIDMLSE 104

Query: 124 ---------------------------ILSSTKYKAKQFRLVCSMLDYMKRNN------- 149
                                      +L S   K             MK  +       
Sbjct: 105 DNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFT 164

Query: 150 -----KVFVPVDVLLMI-LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203
                ++ +  DV  M+    Y E +K    P +    +L+D L K G    A+ +   +
Sbjct: 165 YNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDM 224

Query: 204 KNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
             + + PN  TY IL              +   EM   G+ PD+  +N  +D FCK   +
Sbjct: 225 TGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRM 284

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            EA +L       G  +     + Y+ +I  L +  R  + F L  +M+     PD+  Y
Sbjct: 285 VEAFELLRLFEKDGFVLG---LRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILY 341

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G+  AGK+E+A K L  M +KG  PD   YN  +K LC     +E   L   M E
Sbjct: 342 TILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSE 401

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
              +P   T+ +LI      G    A E + E++K GC+  V T+  +IDGL    +++E
Sbjct: 402 TESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKE 461

Query: 431 ACFLLEEV 438
           A  LL ++
Sbjct: 462 ARLLLHKM 469



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           QTLEE+   G + D++ +   I  + K  +  +A + F  M+        P   TY +++
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMK---EFDCRPDVFTYNVIL 169

Query: 280 VALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             +++ D      F++   M+   C P++ T+  +++G+   G+  +A K  ++M  +G 
Sbjct: 170 RIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGI 229

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+ VTY   +  LC   + ++A +L+  M   G +P    +N L+  + +LG    AFE
Sbjct: 230 SPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFE 289

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
                +K G    +  Y  +IDGLF   +  +A  L   ++ + +K
Sbjct: 290 LLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIK 335



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 34/287 (11%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
            +D +      Y+ +ID L   +   + F L  +ML   KRN K   P  +L  IL Q  
Sbjct: 295 EKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANML---KRNIK---PDIILYTILIQGL 348

Query: 167 EKI-KVK-------------TQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNA 211
            K  K++               P+    N ++ ALC  GL++   ++  +  + +  P+A
Sbjct: 349 SKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDA 408

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            T+ IL              +   E+ + G +P   T+N  ID  CK+  + EA  L   
Sbjct: 409 CTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHK 468

Query: 260 MRT-KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
           M   + +++    A +       +VQ+  + + +  L H  ++G  PD+ +Y  ++ G C
Sbjct: 469 MEVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFC 528

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
             G ++ A K L  +  KG  PD VTYN  +  L      +EA +L+
Sbjct: 529 REGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLF 575



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 11/123 (8%)

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           ++ LEE+ + G   D   +   +         ++A+  +GRM E  C P V TYN+++ +
Sbjct: 112 WQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRI 171

Query: 387 ------YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
                 +F L     AF  ++EM K  C+ ++ T+ +++DGL+   +  +A  + +++  
Sbjct: 172 MMREDVFFML-----AFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTG 226

Query: 441 KGL 443
           +G+
Sbjct: 227 RGI 229



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           + +++ ++I  L +++  +  +  L  + + G   D   +  ++      G  E+A +  
Sbjct: 91  SGESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESF 150

Query: 331 EEMGNKGYPPDIVTYNCFLKVLC-DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             M      PD+ TYN  L+++  ++     A  +Y  M++  C P++ T+ +L+   ++
Sbjct: 151 GRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYK 210

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            G    A + + +M  RG + +  TY ++I GL      E+A  L  E+   G
Sbjct: 211 KGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASG 263


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 175/412 (42%), Gaps = 46/412 (11%)

Query: 75  LGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY--KA 132
           L   L    VV +LQ  +  + +  RFF W   +  + H+   +  M++ L   +    A
Sbjct: 72  LSPKLKPHHVVNILQTHKNTDSV-LRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPA 130

Query: 133 KQFRLV----CSMLDYMKRNNKVFVPVD-------------VLLMILKQ----------Y 165
              R++    C     +KR  +    ++              LL+ L +          Y
Sbjct: 131 DHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMY 190

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILG---- 218
            + +    +P +   N +++ LCK G V  A+ I   + +    PNA TY   ILG    
Sbjct: 191 IKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRN 250

Query: 219 ------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                     + M++ G  P++ TY+T I+  C    + EA D+ E M  KG     PT 
Sbjct: 251 HNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGI---EPTV 307

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY I +V+L       E   LLG M   GC+P++ T+  ++ G+   GK E A     +
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHK 367

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  P  VTYN  +  LC     + A  ++  M+  G  PS QTYN +I  +  +G+
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              A   + +M K G + +V TY  +I G      +  A  LLE +   GLK
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 16/270 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYN-------ILG-----MQT 221
           P     N L++ LC  G  + A TI K  + +   P+  TYN       ++G     M  
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M++ G +P+  TYNT I  +CK   +  A  L E M+  G     P A TY  +I  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGL---KPDAWTYTELISG 491

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++E   SL   M+  G  P+  TY  +++G     KV++A     +M   G  P 
Sbjct: 492 FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPS 551

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +       +  EA    G+M++ G  P+V TY   I      G    AF+ +H
Sbjct: 552 SQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFH 611

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           EM+KR    ++ TY  +I GL    + E+A
Sbjct: 612 EMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 122/285 (42%), Gaps = 18/285 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQT 221
           P     N ++   C  G +  A  I  K +K    PN  TYN L             M+ 
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE M   G  PD +TY   I  F +   +  A  LF  M   G    SP   TY  +I  
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI---SPNHVTYTAIIDG 526

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                ++++  +L   M+ SG LP   TY  ++ G      + EA  F  +M  +G  P+
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA--FET 399
           ++TY  F+  LC N     A +++  M +   +P++ TY+ LI    + G  + A  +  
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNL 646

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              +   GC  +VDTY  ++ GL    +  EA  L+  +  KGL+
Sbjct: 647 LARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQ 691



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 112/261 (42%), Gaps = 16/261 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNILGMQTLEE--------- 224
           P I     L+  L + G  + A  +  K + + + P   TYN L  Q   E         
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M+  G  P   TYN  I  FC    + +A  +F+ M   GS   SP   TY  +I  
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS---SPNVITYNTLIYG 456

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   +     LL  M  +G  PD  TY E++ G    GK+E A      M   G  P+
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTY   +    +    D+AL L+ +M+E G  PS QTYN++IS + +      A     
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCG 576

Query: 402 EMDKRGCAQDVDTYCVMIDGL 422
           +M K+G   +V TY   IDGL
Sbjct: 577 KMVKQGLLPNVITYTSFIDGL 597



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 54/277 (19%)

Query: 201 KRVKNKVKPNANTYNIL-----GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKAR 248
           K V++   P++ TYN++        ++ E       M++ G  P+  TY + ID  C+  
Sbjct: 542 KMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNG 601

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME--ECFSLLGHMINSGCLPD 306
               A  +F  M  +      P   TY+ +I  L Q  R E  E ++LL  + + GC P+
Sbjct: 602 RTGLAFKIFHEMEKRNYF---PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V TY  +++G+C  G+  EA + +  M  KG  P    Y   L   C N   + AL ++ 
Sbjct: 659 VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFY 718

Query: 367 RMIEVG-------------------------C---------WPSVQ-TYNMLISMYFELG 391
            M  +G                         C         W S +  + +L+    + G
Sbjct: 719 SMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEG 778

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL--FDCS 426
           E D   +  H M+ R C  +  TY ++   L   DC+
Sbjct: 779 ETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCA 815


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 179/392 (45%), Gaps = 38/392 (9%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           +T D V+ VL+R + + K A+ FF W   +   +     YN ++DIL     + ++F  +
Sbjct: 1   MTQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILG----RMRRFEEL 56

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQY-------------TEKIKVKTQPEINALNLLLD 185
             +LD M +    FV  D   +++ +Y              ++ ++  + ++ +   LL 
Sbjct: 57  TLVLDEMSKREG-FVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLM 115

Query: 186 ALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD 233
            LC+   VD AET+     ++   +  T NI+              +  +++I     PD
Sbjct: 116 YLCRYKHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIASKCKPD 175

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
            FTY T I        +  A  L+E M         P       +I AL    R+ E  +
Sbjct: 176 VFTYGTFIKALTNKGKLGTAMKLYEAM---WKMQCKPDVVICNCVIDALCFKKRVPEALA 232

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--PDIVTYNCFLKV 351
           +   M   GC+P+V+TY  +++ MC  G++E+ Y+ L+EM  K     PD +T+N  LK 
Sbjct: 233 VFEGMKERGCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKS 292

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           L   K  +E   +  RM   GC  +  T N+L+ ++ +    +    TW EM+K G   D
Sbjct: 293 L---KKPEEVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLD 349

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +Y +MI  L+D  +VE+A     E+ NKG+
Sbjct: 350 RRSYTIMIHWLYDKGRVEDALRYFGEMENKGM 381



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 4/252 (1%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN  +D   + R   E   + + M  +   +   T   Y +++        +EE      
Sbjct: 40  YNEILDILGRMRRFEELTLVLDEMSKREGFVDEDT---YRVLVNRYAGAHMVEEAIGAFN 96

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
                G   D+ +++++L  +C    V+ A   L   G++ +  DI T N  L   C   
Sbjct: 97  KRRELGLELDLVSFQKLLMYLCRYKHVDVAETLLHSKGHE-FGVDIKTMNIVLNGWCVLG 155

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           N  EA R +  +I   C P V TY   I      G+   A + +  M K  C  DV    
Sbjct: 156 NVREAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICN 215

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +ID L    +V EA  + E +  +G       ++S +  +  IG +  +++L D M++ 
Sbjct: 216 CVIDALCFKKRVPEALAVFEGMKERGCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEK 275

Query: 477 YNPVIARRLALN 488
               +   +  N
Sbjct: 276 KGSCMPDEITFN 287


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 164/381 (43%), Gaps = 43/381 (11%)

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174
           P  Y  MID+L+    K   F L   +LD M R   + V   V+L I+++Y   ++    
Sbjct: 139 PALYAAMIDLLA----KHHHFPLARHLLDEM-RERSIPVSSQVILAIIRRY---VRAGMS 190

Query: 175 PEIN-----------------ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
           PE +                  L  LL AL K  L   A+ +    K+   P+   Y  L
Sbjct: 191 PEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSVFPPDVVLYTTL 250

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         Q   EM Q G  P+ +TY + ID   +A  V  A +L   M   G 
Sbjct: 251 VHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGC 310

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK--V 323
               P   T+  ++ A V+  R E+   +   M   GC PD+ TY  ++E  C  G+  +
Sbjct: 311 ---PPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNL 367

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           + A K L +M  KG  PD  T+N  LK++    N + A RLY RM E+ C P+V TYN+L
Sbjct: 368 DAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLL 427

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV-NKG 442
           + ++ +    D       +MD +G   +V+TY  +I+          A   L E+V  K 
Sbjct: 428 MKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMVEEKS 487

Query: 443 LKLPYRKFDSYLMQLSVIGDL 463
           LK     +D  LM L   G L
Sbjct: 488 LKPTKPVYDMVLMLLRKAGQL 508


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 152/341 (44%), Gaps = 26/341 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E  +    P++    +L+D+ CK GL++ A +    +++    PN  TY  L      
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE-FMRTKGSTIS-- 268
                        M+     P+  TY+  ID  CKA  + +A +++E  + T G+  S  
Sbjct: 535 SKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDF 594

Query: 269 ----------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
                     +P   TY  +I  L +  ++ +   LL  M+ +GC P+   Y  +++G C
Sbjct: 595 YFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFC 654

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             GK++ A +    M   GY P + TY   +  +  +   D A+++   M+   C P+V 
Sbjct: 655 KIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVV 714

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  +I    ++GE + A      M+++GC+ +V TY  +IDGL    K + +  L +++
Sbjct: 715 TYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQM 774

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
            +KG    Y  +   +      G L   H L D M+  + P
Sbjct: 775 NSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWP 815



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 26/264 (9%)

Query: 200 CKRVKNKV-----KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKR+ N +      PN + +N L              +    M   G  P    YN  I 
Sbjct: 325 CKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIG 384

Query: 243 TFC------KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C       A ++     ++E M      ++      ++  +  +    + E+ F +L 
Sbjct: 385 SICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGV---GKFEKAFQILK 441

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+  G +PD STY +V+  +C A KVE+++   +EM   G  PD+ TY   +   C   
Sbjct: 442 EMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAG 501

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A   +  M  VGC P+V TY  L+  Y +  +   A + +H M    C  +  TY 
Sbjct: 502 LIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYS 561

Query: 417 VMIDGLFDCSKVEEACFLLEEVVN 440
            +IDGL    ++++AC + E+++ 
Sbjct: 562 ALIDGLCKAGEIQKACEVYEKLIG 585



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 117/277 (42%), Gaps = 32/277 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-----------------VKPNANTYNIL 217
           P     + L+D LCK G +  A  + +++                    + PN  TY  L
Sbjct: 555 PNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGAL 614

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         + L+ M+  G  P+   Y+  ID FCK   +  A ++F  M   G 
Sbjct: 615 IDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGY 674

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P+  TY  +I  + ++ R++    +L  M+N  C P+V TY  +++G+   G++E+
Sbjct: 675 L---PSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEK 731

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A   L  M  KG  P++VTY   +  L      D +L+L+ +M   GC P+  TY +LI+
Sbjct: 732 ALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLIN 791

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
                G  D A     EM      + +  Y   + G 
Sbjct: 792 HCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF 828



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 127/286 (44%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P     + L+D  CK G +D A+ +  R+ K    P+ +TY  L             M+
Sbjct: 640 EPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 699

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM+     P+  TY   ID   K   + +A +L   M  KG    SP   TY  +I 
Sbjct: 700 VLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGC---SPNVVTYTALID 756

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  + +    L   M + GC P+  TY+ ++   C AG ++EA+  L+EM +  +P 
Sbjct: 757 GLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPK 816

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            +  Y+C ++    +K    +L L   M      P    Y MLI  + + G  + A E  
Sbjct: 817 HLQGYHCAVQGF--SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELH 874

Query: 401 HEMDKRGCAQDVDT---YCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            E+ +   + ++ +   Y  +I  L   S+VEEA  L  E+  KG+
Sbjct: 875 KELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGI 920



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 153/412 (37%), Gaps = 77/412 (18%)

Query: 81  TDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCS 140
           TDSVV  + R     ++  RFF+WA  Q  Y+H    Y+ + +IL               
Sbjct: 100 TDSVVVAVLRAVRSPELCVRFFLWAERQVGYSHTGACYDALAEILGFED----------- 148

Query: 141 MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
                        P      +L++  E  +   +     LN+L+   C+ GL D A    
Sbjct: 149 -------------PARTAERLLREIGEDDREVLR---RLLNVLVRRCCRHGLWDEALEEL 192

Query: 201 KRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
            R+K+   +P+A TYN L            G +  +EM   G   D  T        CK 
Sbjct: 193 GRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKV 252

Query: 248 RMVTEAADLFE-----------------------------FMRTKGSTISSPTAKTYAIM 278
               +A ++ E                             F+         P   TY  +
Sbjct: 253 GRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTL 312

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +   ++  +   C  ++  M+  GC P+ S +  ++ G C AG    AYK    M   G 
Sbjct: 313 LSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGS 372

Query: 339 PPDIVTYNCFLKVLCDNKNGDEAL------RLYGRMIEVGC-WPSVQTYNMLISMYFELG 391
           PP  V YN F+  +C  +    A       ++Y  M+   C    V T N    +   +G
Sbjct: 373 PPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCL-CGVG 431

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + + AF+   EM ++G   D  TY  +I  L    KVE++  L +E+   G+
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGV 483



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 152/363 (41%), Gaps = 33/363 (9%)

Query: 106 GHQDNYAHEPLA--YNLMIDILSSTKYKAKQFRLVCSMLDY---MKRNNKVFVPVDVLLM 160
           G   ++ + P A  YN ++ +L+S       FR+   M      M R+   +      L 
Sbjct: 193 GRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQ--ALC 250

Query: 161 ILKQYTEKIKVKTQPEINALNLL----LDALCKCGLVDYAETICKRVK-NKVKPNANTYN 215
            + ++ + + +  + + N   +L    +  L +  L + A +   R++ N   PN  TY 
Sbjct: 251 KVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYR 310

Query: 216 ILGMQTLEE------------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L    L++            M+  G  P+   +N+ +  +C A     A  LF  M T 
Sbjct: 311 TLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTC 370

Query: 264 GSTISSPTAKTYAIMIVALVQNDRM--EECFSLLG----HMINSGCLPDVSTYKEVLEGM 317
           GS    P    Y I I ++   + +   E   L+      M+ + C+ +          +
Sbjct: 371 GS---PPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCL 427

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C  GK E+A++ L+EM  KG+ PD  TY   +  LC  K  +++  L+  M   G  P V
Sbjct: 428 CGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDV 487

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TY +LI  + + G  + A   + EM   GC+ +V TY  ++       ++ +A  +   
Sbjct: 488 YTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHR 547

Query: 438 VVN 440
           +V+
Sbjct: 548 MVD 550



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 54/289 (18%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D M ++ ++ + + VL       +E +     P +     ++D L K G ++ A  +
Sbjct: 683 SLIDRMFKDGRLDLAMKVL-------SEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNL 735

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K   PN  TY  L             ++  ++M   G AP+  TY   I+  C 
Sbjct: 736 LSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCA 795

Query: 247 ARMVTEAADLFE------------------------FMRTKG------STISSPTAKTYA 276
           A ++ EA  L +                        F+ + G      S  + P A  Y 
Sbjct: 796 AGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYG 855

Query: 277 IMIVALVQNDRMEECFSLLGHMIN-SGCLPDVST--YKEVLEGMCLAGKVEEAYKFLEEM 333
           ++I +  +  R+E    L   ++  S  L   ST  Y  +++ +CLA +VEEA+    EM
Sbjct: 856 MLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEM 915

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRL-YGRMIEVGCWPSVQTYN 381
             KG  PD++ +   +K L +    DEAL+L YGR  E   W   ++++
Sbjct: 916 TRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEGVNWQDNKSFD 964



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 33/240 (13%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLV-------CS--------MLDYMKRNNKVFVPVDVLLM 160
           + Y  MID LS      K   L+       CS        ++D + +  K     D  L 
Sbjct: 714 VTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKA----DASLK 769

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYN---- 215
           + KQ   K      P      +L++  C  GL+D A  +   +K+   P +   Y+    
Sbjct: 770 LFKQMNSK---GCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQ 826

Query: 216 ------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                 I  +  LEEM      P    Y   ID+F KA  +  A +L + +    S+++ 
Sbjct: 827 GFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNM 886

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
            +   YA +I AL    ++EE F+L   M   G +PD+  +  +++G+    K +EA + 
Sbjct: 887 TSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 17/210 (8%)

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++    ++   +E    LG + + G  P   TY  +++ +  AG+VE  ++  +EM   
Sbjct: 174 VLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSAS 233

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM-------LISMYFE 389
           G+  D  T   F + LC      +AL +  +          + +N+       +IS   E
Sbjct: 234 GFCMDRSTIGYFAQALCKVGRWADALNMLEK----------EDFNLDTVLCTQMISGLME 283

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
               + A    H M    C  +V TY  ++ G     +      ++  ++ +G       
Sbjct: 284 ASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSL 343

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           F+S +      GD    +KL + M    +P
Sbjct: 344 FNSLVHGYCNAGDYAYAYKLFNRMTTCGSP 373


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           K Y + +     P++  LN  +D + K G  +    + + +K++   P+A +Y+IL    
Sbjct: 503 KIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGL 562

Query: 218 -----GMQTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  +T E    M + G   D   YN  ID FCK   V +A  L E M+TKG     
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGF---E 619

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     +     +V  Y  +++G    G+++EAY  
Sbjct: 620 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLI 679

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LEE+  KG  P++ T+N  L  L   +  +EAL  +  M E+ C P+  TY +LI+   +
Sbjct: 680 LEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G      +Y  MI GL     + EA  L +     G
Sbjct: 740 VRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 196/459 (42%), Gaps = 38/459 (8%)

Query: 40  VFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
            F+ +   V+D+  + E      +A    E AL +L      + V+GVL+R + +   A 
Sbjct: 28  TFEGNRQIVNDICNVLETGAWGPSA----ENALSALNFKPQPEFVIGVLRRLK-DVNRAI 82

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN---KVFVPVD 156
            +F W   +    H P +YN ++ +++    + + F  +  +L  M        V   ++
Sbjct: 83  EYFRWYERRTELPHCPESYNSLLLVMA----RCRNFDALDQILGEMSVAGFGPSVNTCIE 138

Query: 157 VLLMILKQYTEK---------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-K 206
           ++L  +K    +          K K +P  +A   L+ A       D   T+ ++++   
Sbjct: 139 MVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG 198

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
            +P  + +  L             +  L+EM       D   YN  ID+F K   V  A 
Sbjct: 199 YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAW 258

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
             F  +   G     P   TY  MI  L + +R++E   +  H+  +  +P    Y  ++
Sbjct: 259 KFFHEIEANG---LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMI 315

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G   AGK +EAY  LE    KG  P ++ YNC L  L      DEALR++  M +    
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAA- 374

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P++ TYN+LI M    G+ D AFE    M K G   +V T  +M+D L    K++EAC +
Sbjct: 375 PNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAI 434

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            E++  K        F S +  L  +G +   +K+ + M
Sbjct: 435 FEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM 473



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 187/440 (42%), Gaps = 62/440 (14%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +A++FF      +    + + Y  MI +L     KA +      M +++++N +V     
Sbjct: 256 MAWKFFHEI-EANGLKPDEVTYTSMIGVLC----KANRLDEAVEMFEHLEKNRRVPCTYA 310

Query: 157 VLLMIL---------KQYT--EKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKRVK 204
              MI+         + Y+  E+ + K   P + A N +L  L K G VD A  + + +K
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMK 370

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
               PN +TYNIL              +  + M + G  P+  T N  +D  CK++ + E
Sbjct: 371 KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDE 430

Query: 253 AADLFEFMRTKGSTISSPT----------------------------AKTYAIMIVALVQ 284
           A  +FE M  K  T    T                             +T +I+  +L++
Sbjct: 431 ACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIK 490

Query: 285 N----DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           N     R E+   +   M+N  C PD+      ++ M  AG+ E+     EE+ ++ + P
Sbjct: 491 NFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVP 550

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D  +Y+  +  L      +E   L+  M E GC    + YN++I  + + G+ + A++  
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLL 610

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM  +G    V TY  +IDGL    +++EA  L EE  +K ++L    + S +     +
Sbjct: 611 EEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKV 670

Query: 461 GDLG-AIHKLSDHMRKFYNP 479
           G +  A   L + M+K   P
Sbjct: 671 GRIDEAYLILEELMQKGLTP 690



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 4/227 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN-DRMEECFSLLGHMINSGCLPDVS 308
           V  A + F +   +      P +    ++++A  +N D +++   +LG M  +G  P V+
Sbjct: 78  VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQ---ILGEMSVAGFGPSVN 134

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T  E++     A K+ E +  ++ M    + P    Y   +       + D  L L+ +M
Sbjct: 135 TCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQM 194

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            E+G  P+V  +  LI  + + G  D A     EM       D+  Y V ID      KV
Sbjct: 195 QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKV 254

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           + A     E+   GLK     + S +  L     L    ++ +H+ K
Sbjct: 255 DMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK 301


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 16/290 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------GM 219
           E   +   P+I   +LL+D  CK G V  A+ + K +    V+PN  TYN L       M
Sbjct: 291 EMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQM 350

Query: 220 QTLEE------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
           + +E       MI  G  PD F+Y+  I+ +C  + + EA  LF  M  +G T   P   
Sbjct: 351 EVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLT---PNTV 407

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I A  Q  ++ E   L   M  +G LPD+ TY  +LEG C  G + +A++    M
Sbjct: 408 SYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAM 467

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 P++V Y   +  +C + N + A +L+  +   G  P VQ Y  +I+   + G  
Sbjct: 468 QGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLL 527

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A E + +M++ GC  +  +Y V+I G         A  L+ E+ +KG 
Sbjct: 528 DEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGF 577



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 16/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P    LN+L++  C    VD     + K +K  ++P   T+  L             ++ 
Sbjct: 124 PNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALEL 183

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M+  G  PD +TY T I+  CK      AA L + M   G     P   TY+ +I +
Sbjct: 184 FDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM---GEVGCQPDVVTYSTLIDS 240

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++  + E   +  +M   G  P V +Y  +++G+C   + +EA   L EM +    PD
Sbjct: 241 LCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPD 300

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVT++  + + C   N  EA  +   M E+G  P+V TYN L+  Y    E   A + + 
Sbjct: 301 IVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFD 360

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M  RGC  DV +Y ++I+G     +++EA  L  E++++GL      + + +     +G
Sbjct: 361 VMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLG 420

Query: 462 DLGAIHKLSDHMR 474
            L    +L   M 
Sbjct: 421 KLREARELFKDMH 433



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 125/288 (43%), Gaps = 16/288 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           +V  QP++   + L+D+LCK  LV+ A  I   +K K + P   +Y  L           
Sbjct: 224 EVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWK 283

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                L EM  +   PD  T++  ID FCK   V EA  + + M   G     P   TY 
Sbjct: 284 EASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGV---EPNVITYN 340

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++        + E   L   MI  GC PDV +Y  ++ G C+  +++EA +   EM ++
Sbjct: 341 SLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQ 400

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P+ V+Y   +   C      EA  L+  M   G  P + TY++L+  + + G    A
Sbjct: 401 GLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKA 460

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           F  +  M       ++  Y ++ID +     +  A  L  E+   GL+
Sbjct: 461 FRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQ 508



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G +P+  T N  I+ FC  + V     +   +   G     PT  T+  +I  L
Sbjct: 115 KQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGL---QPTIITFTTLINGL 171

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +     +   L   M+  GC PDV TY  ++ G+C  G+   A   +++MG  G  PD+
Sbjct: 172 CKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDV 231

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY+  +  LC ++  +EAL ++  M   G  P+V +Y  LI           A    +E
Sbjct: 232 VTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNE 291

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS----YLMQLS 458
           M       D+ T+ ++ID       V EA  +L+ +   G++     ++S    Y +Q+ 
Sbjct: 292 MTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQME 351

Query: 459 VIGDLGAIHKLSDHMRKFYNPVIAR 483
           V+             RK ++ +I R
Sbjct: 352 VV-----------EARKLFDVMITR 365


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 150/303 (49%), Gaps = 19/303 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D+ L +LK+     K K +  +   N ++D LCK   +D A  +  +++ K +KP+  T
Sbjct: 237 IDLALSLLKKME---KGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFT 293

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              + L +MI+    P+  T+N+ ID F K   + EA  LF+ M 
Sbjct: 294 YNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 353

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +      P   TY  +I     +DR++E   +   M++  CLPDV TY  +++G C A 
Sbjct: 354 QRSI---DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAK 410

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +VEE  +   EM  +G   + VTYN  ++ L    + D A +++ +M+  G  P + TY+
Sbjct: 411 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 470

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+    + G+ + A   +  + K     ++ TY +MI+G+    KVE+   L   +  K
Sbjct: 471 ILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 442 GLK 444
           G+K
Sbjct: 531 GVK 533



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------ 217
           + E +K +  P I   + LL A+ K    D   ++ ++++N   P N  TY+IL      
Sbjct: 69  FGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCR 128

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ PD  T ++ ++ +C  + ++EA  L + M   G     P 
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGY---KPD 185

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G ++ A   L+
Sbjct: 186 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 245

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M       ++V YN  +  LC  K+ D+A  L+ +M   G  P V TYN LIS     G
Sbjct: 246 KMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYG 305

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    +V T+  +ID      K+ EA  L +E++ + +
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 357



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P++   N L+  LC  G   D +  +   ++ K+ PN  T+N L              +
Sbjct: 288 KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEK 347

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EMIQ    P+  TYN+ I+ FC    + EA  +F  M +K      P   TY  +I 
Sbjct: 348 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL---PDVVTYNTLIK 404

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  R+EE   L   M   G + +  TY  +++G+  AG  + A K  ++M + G PP
Sbjct: 405 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 464

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  L  LC     ++AL ++  + +    P++ TYN++I    + G+ +  ++ +
Sbjct: 465 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +  +G   +V  Y  MI G       EEA  L  E+   G
Sbjct: 525 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 566



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 139/318 (43%), Gaps = 16/318 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           +K+  +P+I  L+ LL+  C    +  A  +  + V+   KP+  T+N L          
Sbjct: 143 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKA 202

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  ++ M+  G  PD FTY T ++  CK   +  A  L + M  KG          Y
Sbjct: 203 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME-KGKI--EANVVIY 259

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L +   M++ F L   M   G  PDV TY  ++  +C  G+  +A + L +M  
Sbjct: 260 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIE 319

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +   P++VT+N  +          EA +L+  MI+    P++ TYN LI+ +      D 
Sbjct: 320 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 379

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A + +  M  + C  DV TY  +I G     +VEE   L  E+  +GL      +++ + 
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 439

Query: 456 QLSVIGDLGAIHKLSDHM 473
            L   GD     K+   M
Sbjct: 440 GLFQAGDCDMAQKIFKKM 457



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 128/304 (42%), Gaps = 45/304 (14%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------- 217
           ++ I+ K  P +   N L+DA  K G L++  +   + ++  + PN  TYN L       
Sbjct: 315 SDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 374

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---STIS- 268
                  Q    M+     PD  TYNT I  FCKA+ V E  +LF  M  +G   +T++ 
Sbjct: 375 DRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 434

Query: 269 ----------------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                        P   TY+I++  L +  ++E+   +  ++  
Sbjct: 435 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 494

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S   P++ TY  ++EGMC AGKVE+ +     +  KG  P+++ Y   +   C     +E
Sbjct: 495 SKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 554

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L+  M E G  P    YN LI      G+   + E   EM   G   D  T  ++I+
Sbjct: 555 ADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 614

Query: 421 GLFD 424
            L D
Sbjct: 615 MLHD 618



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 1/207 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+I++    +  ++    ++LG M+  G  PD+ T   +L G C   ++ EA   +++M
Sbjct: 118 TYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 177

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY PD VT+N  +  L  +    EA+ L  RM+  GC P + TY  +++   + G+ 
Sbjct: 178 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 237

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A     +M+K     +V  Y  +IDGL     +++A  L  ++  KG+K     ++S 
Sbjct: 238 DLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSL 297

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +  L   G    A   LSD + +  NP
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINP 324



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 8/203 (3%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++++  +L G M+ S   P +  + ++L  +    K +      E+M N G P +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C       AL + G+M+++G  P + T + L++ Y        A     +M + 
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           G   D  T+  +I GLF  +K  EA  L++ +V +G +     + + +  L   GD+   
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 467 HKLSDHMRK--------FYNPVI 481
             L   M K         YN +I
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTII 263



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  L + G  D A+ I K+ V + V P+  TY+IL             +   E + +
Sbjct: 435 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 494

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P+ +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +   
Sbjct: 495 SKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV---KPNVIIYTTMISGFCRKGL 551

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            EE  +L   M   G LPD   Y  ++      G    + + ++EM + G+  D  T + 
Sbjct: 552 KEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISM 611

Query: 348 FLKVLCDNK 356
            + +L D +
Sbjct: 612 VINMLHDGR 620


>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
          Length = 528

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 194/441 (43%), Gaps = 42/441 (9%)

Query: 50  DVAKLYEAIIDNSNAYD----NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA 105
           DVA+  EA++  +  +          L+  G   +   VV VL R +     A   F WA
Sbjct: 76  DVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLARLRNSCAAAHAAFRWA 135

Query: 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK-- 163
             Q  YA    AY+ M+ IL+    K ++F    ++LD M+R++ +  P  V+L+I +  
Sbjct: 136 SAQPGYAPGRHAYHSMLAILA----KHRRFDDARALLDQMRRSS-LASPAAVMLLIRRYC 190

Query: 164 ----------QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
                      +     +  +P +   + LL ALC+   V  AE +    + +      +
Sbjct: 191 AARDVAGAVAAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKS 250

Query: 214 YNIL------GMQTLEEMIQMGHA-------PDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           +N++       ++++ E  +  +A        D  +Y + I  F KA  +     LF  M
Sbjct: 251 FNVVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRM 310

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           +  G     P  K Y  ++ AL +   + E  +L+  M   G  PD +T+  ++  +C A
Sbjct: 311 KEAGVV---PDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKA 367

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
            +V+EA K L++M  +G  P + T++  L V    ++  E   L  +M E+ C P + T+
Sbjct: 368 RQVQEARKMLDDMLGRGLSPSVRTFHALLDV---ARSPIEVFDLLDKMKELQCDPEMDTF 424

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            MLI  +    + D   + W  M   G + D   Y V+I GLF   ++EE+    EE+  
Sbjct: 425 IMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKA 484

Query: 441 KGLKLPYRKFDSYLMQLSVIG 461
           KG   P  K    ++Q  + G
Sbjct: 485 KG--FPPEKKTEEMIQAWLSG 503



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 6/248 (2%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+AP    Y++ +    K R   +A  L + MR   S+++SP A    ++I       
Sbjct: 138 QPGYAPGRHAYHSMLAILAKHRRFDDARALLDQMRR--SSLASPAA--VMLLIRRYCAAR 193

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +    +    + + G  P V+ +  +L  +C    V++A   L     K +P +  ++N
Sbjct: 194 DVAGAVAAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLS-SEKEFPFETKSFN 252

Query: 347 CFLKVLCDN-KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
             L   C+  ++  EA R +  M   G    V +Y  +IS + + G  D   + ++ M +
Sbjct: 253 VVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKE 312

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G   D   Y  ++  L     V EA  L+  +  KG+      F+S +  L     +  
Sbjct: 313 AGVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQE 372

Query: 466 IHKLSDHM 473
             K+ D M
Sbjct: 373 ARKMLDDM 380


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 18/295 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +    +L+ +LC       A  + K ++   +KPN +TY +L              + 
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M++ G  P+  TYN  I+ +CK  M+ +A D+ E M ++     SP  +TY  +I  
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL---SPNTRTYNELIKG 437

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +++ + +   +L  M+    LPDV TY  +++G C +G  + AY+ L  M ++G  PD
Sbjct: 438 YCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY   +  LC +K  +EA  L+  + + G  P+V  Y  LI  Y + G+ D A     
Sbjct: 497 QWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
           +M  + C  +  T+  +I GL    K++EA  L E++V  GL+ P    D+ L+ 
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ-PTVSTDTILIH 610



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 208/461 (45%), Gaps = 38/461 (8%)

Query: 33  VPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQ 92
           V  L+  + +E SDS+S   +L  +I+   N + +   +L S+ V   + S V  L    
Sbjct: 45  VSPLLRNLPEEESDSMSVPHRLL-SILSKPNWHKS--PSLKSM-VSAISPSHVSSLFSLD 100

Query: 93  FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF 152
            + K A  F  W      Y H   +Y  ++ +L +  Y    F++   M+          
Sbjct: 101 LDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDAL 160

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNA 211
             +D+   + K   E+ ++K +  I   N LL++L + GLVD  + +  + +++KV PN 
Sbjct: 161 YVLDLCRKMNKD--ERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNI 218

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            TYN +              Q + ++++ G  PD FTY + I  +C+ + +  A  +F  
Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M  KG   +      Y  +I  L    R++E   L   M +  C P V TY  +++ +C 
Sbjct: 279 MPLKGCRRNEVA---YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           + +  EA   ++EM   G  P+I TY   +  LC     ++A  L G+M+E G  P+V T
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN LI+ Y + G  + A +    M+ R  + +  TY  +I G +  S V +A  +L +++
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG-YCKSNVHKAMGVLNKML 454

Query: 440 NKGLKLP--------------YRKFDSYLMQLSVIGDLGAI 466
            + + LP                 FDS    LS++ D G +
Sbjct: 455 ERKV-LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-----------GMQTL 222
           P +   N L++  CK G+++ A  + + +++ K+ PN  TYN L            M  L
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL 450

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            +M++    PD  TYN+ ID  C++     A  L   M  +G     P   TY  MI +L
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV---PDQWTYTSMIDSL 507

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++ R+EE   L   +   G  P+V  Y  +++G C AGKV+EA+  LE+M +K   P+ 
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +T+N  +  LC +    EA  L  +M+++G  P+V T  +LI    + G+ D A+  + +
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQ 627

Query: 403 MDKRGCAQDVDTYCVMI 419
           M   G   D  TY   I
Sbjct: 628 MLSSGTKPDAHTYTTFI 644



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 68/369 (18%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GM 219
           K  P     N L+   CK  +      + K ++ KV P+  TYN L              
Sbjct: 423 KLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + L  M   G  PD +TY + ID+ CK++ V EA DLF+ +  KG    +P    Y  +I
Sbjct: 483 RLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV---NPNVVMYTALI 539

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE-------------- 325
               +  +++E   +L  M++  CLP+  T+  ++ G+C  GK++E              
Sbjct: 540 DGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ 599

Query: 326 ---------------------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
                                AY   ++M + G  PD  TY  F++  C      +A  +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
             +M E G  P + TY+ LI  Y +LG+ + AF+    M   GC     T+  +I  L +
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719

Query: 425 -------------CS-----KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
                        C+     + +    LLE++V   +    + ++  ++ +  +G+L   
Sbjct: 720 MKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVA 779

Query: 467 HKLSDHMRK 475
            K+ DHM++
Sbjct: 780 EKVFDHMQR 788



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 72/321 (22%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQT------ 221
           +K+  QP ++   +L+  L K G  D+A +  ++ + +  KP+A+TY    +QT      
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF-IQTYCREGR 652

Query: 222 -------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  + +M + G +PD FTY++ I  +        A D+ + MR  G     P+  T
Sbjct: 653 LLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGC---EPSQHT 709

Query: 275 YAIMIVALVQ----------------NDRME--ECFSLLGHMINSGCLPDVSTYKEVLEG 316
           +  +I  L++                ++ ME      LL  M+     P+  +Y++++ G
Sbjct: 710 FLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILG 769

Query: 317 MCLAGKVEEAYKFLEEMG-NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           +C  G +  A K  + M  N+G  P  + +N  L   C  K  +EA ++   MI VG  P
Sbjct: 770 ICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLP 829

Query: 376 SVQTYNMLISMYFELGEPD-------------------------------GAFETWHE-- 402
            +++  +LI   ++ GE +                               G  E ++E  
Sbjct: 830 QLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELF 889

Query: 403 --MDKRGCAQDVDTYCVMIDG 421
             M+K GC     TY ++I+G
Sbjct: 890 NVMEKNGCKFSSQTYSLLIEG 910


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 182/402 (45%), Gaps = 22/402 (5%)

Query: 33  VPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQ 92
           V  L+  + ++ SD  S   +L+ +I+   N +     +L S+ VP  + S V  L    
Sbjct: 45  VSPLIRNLPEDESDPTSVPHRLF-SILSKPNWHKC--PSLKSM-VPAISPSHVSSLFSLD 100

Query: 93  FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF 152
            + K A  F  W      Y H   +Y  ++ +L +  Y    F++   M+          
Sbjct: 101 LDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVADTL 160

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNA 211
             +D+   + K   E  ++K +  I   N LL++L + GLVD  + +  + +++KV PN 
Sbjct: 161 FVLDLCRKMNKD--ESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNI 218

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            TYN +              Q +  +++ G  PD FTY + I  +C+ + +  A  +F+ 
Sbjct: 219 YTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKE 278

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M  KG   +      Y  +I  L    R++E   L   M +  C P V TY  +++ +C 
Sbjct: 279 MPLKGCRRNEVA---YTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCG 335

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           + +  EA   ++EM  KG  P+I TY   +  LC     ++A  L G+M+E G  P+V T
Sbjct: 336 SERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVIT 395

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           YN LI+ Y + G  + A +    M+ R    +  TY  +I G
Sbjct: 396 YNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKG 437



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 144/302 (47%), Gaps = 18/302 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-----------GMQTL 222
           P +   N L++  CK G+++ A  + + ++++ ++PN  TYN L            M  L
Sbjct: 391 PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVL 450

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            +M++    PD  TYN+ ID  C++     A  L   M  +G     P   TY  MI +L
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV---PDPWTYTSMIDSL 507

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++ R+EE   L   +     +P+V  Y  +++G C AGKV EA+  LE+M +K   P+ 
Sbjct: 508 CKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNS 567

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +T+N  +  LC +    EA  L  +M+++   P+V T  +LI    + G+ D A+  + +
Sbjct: 568 LTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQ 627

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M   G   D  TY   I       ++++A  ++ ++   G+      + S +      GD
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGY---GD 684

Query: 463 LG 464
           LG
Sbjct: 685 LG 686



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 150/367 (40%), Gaps = 68/367 (18%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           +P     N L+   CK  +      + K ++ KV P+  TYN L              + 
Sbjct: 425 RPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M   G  PD +TY + ID+ CK++ V EA DLF+ +  K      P    Y  +I  
Sbjct: 485 LSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVI---PNVVMYTALIDG 541

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE---------------- 325
             +  ++ E   +L  M++  CLP+  T+  ++ G+C  GK++E                
Sbjct: 542 YCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPT 601

Query: 326 -------------------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                              AY+  ++M + G  PD  TY  F++  C      +A  +  
Sbjct: 602 VSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVA 661

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC- 425
           +M E G  P + TY+ LI  Y +LG  + AF     M   GC     T+  +I  L +  
Sbjct: 662 KMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMK 721

Query: 426 -SKVEEA----CF------------LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             KV+      C             LLE++V  G+    + ++  ++ +  IG+L    K
Sbjct: 722 YGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEK 781

Query: 469 LSDHMRK 475
           + DHM++
Sbjct: 782 VFDHMQQ 788



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 70/323 (21%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--------GM 219
           +K+  QP ++   +L+  L K G  D+A     + + +  KP+A+TY            +
Sbjct: 594 VKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653

Query: 220 QTLEEMI----QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           Q  E+M+    + G +PD FTY++ I  +        A   F  ++    T   P+  T+
Sbjct: 654 QDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSA---FVVLKRMHDTGCEPSQHTF 710

Query: 276 AIMIVAL----------------VQNDRME--ECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             +I  L                V ++ ME      LL  M+  G  P+  +Y++++ G+
Sbjct: 711 LSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGI 770

Query: 318 CLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           C  G +  A K  + M  K G  P  + +N  L   C  +  +EA ++   MI VG  P 
Sbjct: 771 CEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQ 830

Query: 377 VQTYNMLISMYFELGEPD-------------------------------GAFETWHE--- 402
           +++  +LI   ++ GE +                               G  E ++E   
Sbjct: 831 LESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFN 890

Query: 403 -MDKRGCAQDVDTYCVMIDGLFD 424
            M+K GC     TY ++I+G  D
Sbjct: 891 VMEKNGCTFSSQTYSLLIEGPPD 913


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 170/379 (44%), Gaps = 47/379 (12%)

Query: 80  TTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVC 139
           T D V+ VL+  +   K+A R F WA  Q+++ H    YN  ++ L    + +K  ++  
Sbjct: 3   TEDDVIHVLENIK-SPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFD 61

Query: 140 SMLDYMKRNNKVFV------------PVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
            ML Y +    ++               D  L +L+    K+     P    +N+L+  L
Sbjct: 62  DML-YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKM---LTPTTFIVNMLVSCL 117

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
           CK G VD A  + KR+ ++   +  +YN+L                  TY       CKA
Sbjct: 118 CKNGKVDAAYELYKRLSDECSLDRISYNML------------------TYG-----LCKA 154

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI----NSGC 303
             +  A  +F  M         P+  TY  ++    +  RME+  +LL  MI     S  
Sbjct: 155 DQIDRALAVFGEMEENAVV---PSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDV 211

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +PD+ +Y  V+ G C A ++  A   L  M   G  P++VT+N  L  LC     DEA  
Sbjct: 212 VPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANA 271

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           ++  M+E  C P+  TY +LI+ +      D A + + +M +RG   +V TY  +I GL 
Sbjct: 272 MFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLC 331

Query: 424 DCSKVEEACFLLEEVVNKG 442
           D +KVE+A  +L+ + + G
Sbjct: 332 DANKVEDALEILKRMSSTG 350



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 73/217 (33%), Gaps = 48/217 (22%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA----ETICKR---------------------- 202
           IK    P +   N LLD LC  G +D A    E + +R                      
Sbjct: 242 IKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRI 301

Query: 203 ----------VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
                     ++  V+PN  TY  L             ++ L+ M   G  P+  TY   
Sbjct: 302 DKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRV 361

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I   CK   +  A  LF       +    P +  Y+ +I  L +  +  E +     M+ 
Sbjct: 362 IGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVE 421

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           S  +     YK + +G+ L  + E+  +   E    G
Sbjct: 422 SKLVAKPHIYKAMADGLELVQETEKVERVCLEASAHG 458


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 170/379 (44%), Gaps = 47/379 (12%)

Query: 80  TTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVC 139
           T D V+ VL+  +   K+A R F WA  Q+++ H    YN  ++ L    + +K  ++  
Sbjct: 3   TEDDVIHVLENIK-SPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFD 61

Query: 140 SMLDYMKRNNKVFV------------PVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
            ML Y +    ++               D  L +L+    K+     P    +N+L+  L
Sbjct: 62  DML-YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKM---LTPTTFIVNMLVSCL 117

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
           CK G VD A  + KR+ ++   +  +YN+L                  TY       CKA
Sbjct: 118 CKNGKVDAAYELYKRLSDECSLDRISYNML------------------TYG-----LCKA 154

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI----NSGC 303
             +  A  +F  M         P+  TY  ++    +  RME+  +LL  MI     S  
Sbjct: 155 DQIDRALAVFGEMEENAVV---PSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDV 211

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +PD+ +Y  V+ G C A ++  A   L  M   G  P++VT+N  L  LC     DEA  
Sbjct: 212 VPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANA 271

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           ++  M+E  C P+  TY +LI+ +      D A + + +M +RG   +V TY  +I GL 
Sbjct: 272 MFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLC 331

Query: 424 DCSKVEEACFLLEEVVNKG 442
           D +KVE+A  +L+ + + G
Sbjct: 332 DANKVEDALEILKRMSSTG 350



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 73/217 (33%), Gaps = 48/217 (22%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA----ETICKR---------------------- 202
           IK    P +   N LLD LC  G +D A    E + +R                      
Sbjct: 242 IKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRI 301

Query: 203 ----------VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
                     ++  V+PN  TY  L             ++ L+ M   G  P+  TY   
Sbjct: 302 DKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRV 361

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I   CK   +  A  LF       +    P +  Y+ ++  L +  +  E +     M+ 
Sbjct: 362 IGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVE 421

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           S  +     YK + +G+ L  + E+  +   E    G
Sbjct: 422 SKLVAKPHIYKAMADGLELVQETEKVERVCLEASAHG 458


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 135/280 (48%), Gaps = 25/280 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E ++   +P++   ++L+DALCK G+V  A                      +    +
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEA----------------------LSVFGK 339

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MIQ+   PD  TY++ I   CK+ +  E++ L   M ++      P   T++I +    +
Sbjct: 340 MIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI---RPDVVTFSIWVDVFCK 396

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              + E  S++  MI  G  P+V TY  +++G CL  +++EA K  + M NKG  PD+++
Sbjct: 397 KGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLS 456

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +K  C ++  DEA +L+  M   G  P+  T+  LIS   + G P  A E + +M 
Sbjct: 457 YNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMG 516

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             GC  D+ TY  ++ G      ++EA  L E +    LK
Sbjct: 517 SHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLK 556



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 145/322 (45%), Gaps = 51/322 (15%)

Query: 170 KVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL----------- 217
           K+  +P I   N L++ LC  G +V+  E +   +    +P   T+ ++           
Sbjct: 167 KLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTS 226

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +  +++M+++   P+  +Y+  ID+ CK R+V EA DLF  MR+ G    SPT  TY 
Sbjct: 227 AAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGI---SPTVVTYN 283

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  +  + + ++   L   M+     PDV T+  +++ +C  G V EA     +M   
Sbjct: 284 SLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQI 343

Query: 337 GYPPDIVTYNCFLKVLCDN---------------------------------KNG--DEA 361
              PDIVTY+  +  +C +                                 K G   EA
Sbjct: 344 AMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEA 403

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             +   MIE G  P+V TYN L+  Y    + D A + +  M  +GCA DV +Y ++I G
Sbjct: 404 QSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKG 463

Query: 422 LFDCSKVEEACFLLEEVVNKGL 443
                +++EA  L +E+ +KGL
Sbjct: 464 YCKSERIDEAKQLFDEMSHKGL 485



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 16/222 (7%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN 215
           V+L  L  + + I++  +P+I   + L+  +CK  L   + T+   + ++ ++P+  T++
Sbjct: 329 VVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFS 388

Query: 216 IL-------GM-----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           I        GM       +  MI+ G  P+  TYN+ +D +C    + EA  +F+ M  K
Sbjct: 389 IWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNK 448

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G    +P   +Y I+I    +++R++E   L   M + G  P+  T+  ++ G+C AG+ 
Sbjct: 449 GC---APDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRP 505

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
             A +  ++MG+ G PPD++TY+  L   C + + DEAL L+
Sbjct: 506 YAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALF 547



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 16/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           L  + + + +   P I   N LL AL +    D   +I ++++   V  +  T  IL   
Sbjct: 89  LAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINC 148

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G   L ++ ++G  P   T+NT I+  C    + EA +  +++ ++G    
Sbjct: 149 LCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGY--- 205

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            PT  T+ +++  L +  +       +  M+   C P+V +Y  +++ +C    V EA  
Sbjct: 206 QPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVD 265

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               M + G  P +VTYN  +  +C++    +A  L+  M+E    P V T+++L+    
Sbjct: 266 LFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALC 325

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + G    A   + +M +     D+ TY  +I G+   S  +E+  LL E++++ ++
Sbjct: 326 KEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIR 381



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 88/217 (40%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N A+   CK    +   D   +          P    +  ++ ALV+    +   S+   
Sbjct: 70  NFAVRDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRK 129

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   G    V T   ++  +C    V   +  L ++   G+ P I+T+N  +  LC    
Sbjct: 130 MEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGR 189

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             EA+     ++  G  P+V T+ M+++   ++G+   A     +M +  C  +V +Y +
Sbjct: 190 IVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSI 249

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           +ID L     V EA  L   + + G+      ++S +
Sbjct: 250 IIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLI 286


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+EK+  +  P++   N L+   C  G L D  +   K     + P+  T++IL      
Sbjct: 356 YSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCK 415

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++    PD  TY++ +D +C    V +A  +F  M  +G T     
Sbjct: 416 DGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVT---AN 472

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y IMI    +   ++E   L   M +    PDV TY  +++G+C +G++  A + ++
Sbjct: 473 VQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVD 532

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G  PDI+TYN  L  LC   + D+A+ L  ++   G  P + TY +L+    + G
Sbjct: 533 EMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSG 592

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + A + + ++  +G   DV  Y VMI G  D    +EA  LL ++   G
Sbjct: 593 KLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENG 643



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 134/265 (50%), Gaps = 23/265 (8%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY 214
           +VL M++KQ         +P++   + L+D  C    V+ AE+I   + ++ V  N  +Y
Sbjct: 424 NVLAMMMKQ-------SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSY 476

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           NI+             M+  +EM      PD  TY++ ID  CK+  ++ A +L + M  
Sbjct: 477 NIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHY 536

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           +G     P   TY  ++ AL +   +++  +LL  +   G  PD++TY  +++G+C +GK
Sbjct: 537 RGQ---QPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGK 593

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +E+A K  E++  KGY  D+  Y   ++  CD    DEAL L  +M E GC P  +TY +
Sbjct: 594 LEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEI 653

Query: 383 LISMYFELGEPDGAFETWHEMDKRG 407
           +I   FE  E D A +   EM  RG
Sbjct: 654 IILSLFEKDENDMAEKLLREMIMRG 678



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------QTLEEMIQMG 229
           L++ LCK G    A  + +R   K V+P+   YN +  GM              E +   
Sbjct: 304 LINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKR 363

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD FTYN  I  FC    + +A DLF  M +K      P   T++I++    ++  ++
Sbjct: 364 IFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNII---PDVYTFSILVDGFCKDGNIK 420

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  ++L  M+     PDV TY  +++G CL  +V +A      M ++G   ++ +YN  +
Sbjct: 421 EAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMI 480

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  DEA++L+  M     +P V TY+ LI    + G    A E   EM  RG  
Sbjct: 481 NGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQ 540

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D+ TY  ++D L     V++A  LL ++  +G++
Sbjct: 541 PDIITYNSILDALCKKHHVDKAITLLTKLKGQGIR 575



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P++   ++L+D  CK G +  A+ +   + K  +KP+  TY+ L                
Sbjct: 401 PDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESI 460

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M   G   +  +YN  I+ FCK +MV EA  LF+ M  K      P   TY+ +I  
Sbjct: 461 FNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIF---PDVITYSSLIDG 517

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+     L+  M   G  PD+ TY  +L+ +C    V++A   L ++  +G  PD
Sbjct: 518 LCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPD 577

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TY   +K LC +   ++A +++  ++  G    V  Y ++I  + + G  D A     
Sbjct: 578 MNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLS 637

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M++ GC  D  TY ++I  LF+  + + A  LL E++ +GL
Sbjct: 638 KMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 116/252 (46%), Gaps = 3/252 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +++I MG   D  +Y T I+  CK   V E     E +R     +  P    Y  +I  +
Sbjct: 287 DKVIAMGFHLDQVSYGTLINGLCK---VGETKAALELLRRNDGKLVQPDVVMYNTIIDGM 343

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++  + + F L    ++    PDV TY  ++ G C+ GK+++A     +M +K   PD+
Sbjct: 344 CKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDV 403

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T++  +   C + N  EA  +   M++    P V TY+ L+  Y  + E + A   ++ 
Sbjct: 404 YTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNT 463

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M  RG   +V +Y +MI+G      V+EA  L +E+ +K +      + S +  L   G 
Sbjct: 464 MSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGR 523

Query: 463 LGAIHKLSDHMR 474
           +    +L D M 
Sbjct: 524 ISYALELVDEMH 535



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T    I       ++ +       +I  G   D  +Y  ++ G+C  G+ + A + 
Sbjct: 261 PDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALEL 320

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L     K   PD+V YN  +  +C +K+ ++A  LY   +    +P V TYN LIS +  
Sbjct: 321 LRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCI 380

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +G+   A + +++M  +    DV T+ +++DG      ++EA  +L  ++ + +K
Sbjct: 381 VGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIK 435



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLE-EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +  +K  ++  CL    E + ++   ++   GY PD +T   F+K  C      +AL  +
Sbjct: 227 IEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQALHFH 286

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            ++I +G      +Y  LI+   ++GE   A E     D +    DV  Y  +IDG+   
Sbjct: 287 DKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKD 346

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             V +A  L  E V+K +      +++ +    ++G L
Sbjct: 347 KHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKL 384


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 187/430 (43%), Gaps = 47/430 (10%)

Query: 82  DSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM 141
           D  V VL  F+   ++A R F WA  Q  +      +  +++IL+        + ++  +
Sbjct: 82  DLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERV 141

Query: 142 LDY-MKRNNKVF--------VPVDVLLMILKQYTEK-------------IKVKTQPEINA 179
           ++  M R   V         V V +L +++  Y++K             IK +  P++  
Sbjct: 142 INANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKN 201

Query: 180 LNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMI 226
            N +L  L    L+  A  + + +    +KP   TYN L            G+  L EM 
Sbjct: 202 CNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQ 261

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G AP++ TYN  I+   K     +A  L   M   G  +S   A TY  +I       
Sbjct: 262 RRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVS---AYTYNPLIYGYFNKG 318

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            + E  SL   M+  G  P V+TY   + G+C  G++ +A + L +M      PD+V+YN
Sbjct: 319 MLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYN 378

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C   N  +A  L+  +  +  +P++ TYN L+      GE + A +   EM   
Sbjct: 379 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 438

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           G A D+ TY ++++G      +  A    +E++++GL+L     DSY     ++G+L   
Sbjct: 439 GIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLEL-----DSYAYATRIVGEL--- 490

Query: 467 HKLSDHMRKF 476
            KL D  R F
Sbjct: 491 -KLGDTSRAF 499



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 128/269 (47%), Gaps = 25/269 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N LLD LC+ G ++ A+ +      KV                EMI  G APD 
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQL------KV----------------EMINEGIAPDI 444

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY   ++  CK   ++ A + F+ M  +G  + S     YA  IV  ++       FSL
Sbjct: 445 VTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDS---YAYATRIVGELKLGDTSRAFSL 501

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+  G  PD+  Y  V++G+C  G +EEA + L++M + G  PD VTY   +    +
Sbjct: 502 QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           N    +   ++  M+  G  PSV TY +LI  +   G  + AF  + EM ++G   +V T
Sbjct: 562 NGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVIT 621

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y  +I+GL    ++++A     E+V KG+
Sbjct: 622 YNSLINGLCKVRRMDQAYNFFAEMVEKGI 650



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 144/329 (43%), Gaps = 51/329 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQT--------- 221
           +P I   N LLD+ CK G V     +   ++ +   PN  TYN+L  G+           
Sbjct: 231 KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKG 290

Query: 222 -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM++ G     +TYN  I  +    M+ EA  L E M  KG+   SPT  TY   I 
Sbjct: 291 LIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA---SPTVATYNSFIY 347

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  RM +    L  M+ +  LPDV +Y  ++ G C  G + +A+   +E+ +    P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI---------SM---YF 388
            IVTYN  L  LC     + A +L   MI  G  P + TY +L+         SM   +F
Sbjct: 408 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFF 467

Query: 389 E-----------------------LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           +                       LG+   AF    EM  +G   D+  Y V++DGL   
Sbjct: 468 DEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKL 527

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
             +EEA  LL+++V+ G+   Y  + S +
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTSII 556



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 23/276 (8%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETI----------------CKRVKNKVKPN 210
           E I     P+I    +L++  CK G +  A+                    R+  ++K  
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKL- 492

Query: 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
            +T     +Q  EEM+  G  PD   YN  +D  CK   + EA++L + M + G     P
Sbjct: 493 GDTSRAFSLQ--EEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVI---P 547

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY  +I A ++N R+ +   +   M++ G  P V TY  ++ G    G++E A+ + 
Sbjct: 548 DYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYF 607

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM  KG  P+++TYN  +  LC  +  D+A   +  M+E G +P+  +Y +LI+    +
Sbjct: 608 SEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNM 667

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DC 425
           G    A   + +M  RG   D  T+  ++  L  DC
Sbjct: 668 GNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDC 703



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 3/237 (1%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I  + K  MV +   +F+ M     +  SP  K    ++  L   D M +   +   M  
Sbjct: 171 IWVYSKKSMVEQCLSVFDKMI---KSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  P + TY  +L+  C  GKV++    L EM  +G  P+ VTYN  +  L      ++
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 287

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L G M++ G   S  TYN LI  YF  G    A     EM  +G +  V TY   I 
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
           GL    ++ +A   L +++   L      +++ +     +G+L     L D +R  Y
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 404


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 141/302 (46%), Gaps = 21/302 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----------- 217
           K+  QP+      L+  LC  G +  A     K V    +PN  TY  L           
Sbjct: 137 KLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSR 196

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             ++ L  M+Q    P+  TYNT ID   K R V EA ++F  M  KG    SP   TY 
Sbjct: 197 AAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGI---SPNVSTYN 253

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L +    +   +L+  M++S  +P+V  +  +++ +C  G V  A+  ++ M  +
Sbjct: 254 SIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQR 313

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD+VTY   +   C     DEA +++  M+  GC P+V +Y+ LI+ Y ++   D A
Sbjct: 314 GVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKA 373

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFDS 452
              + EM +R    ++ TY  +I GL    ++ +A  L  E+V  G ++P    YR    
Sbjct: 374 MYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASG-QIPDLVTYRILLD 432

Query: 453 YL 454
           YL
Sbjct: 433 YL 434



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 189/456 (41%), Gaps = 64/456 (14%)

Query: 47  SVSDVAKLYEAIIDNSNAYD---NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
           SV D AK+  +I  N   Y    ++ K +DSLG+P    ++  V+  F    ++ F F +
Sbjct: 73  SVVDFAKILTSIA-NMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 104 WA-----GHQDNYA-----------------------------HEP--LAYNLMIDILSS 127
            A     GHQ + A                              +P  + Y  +I  L  
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVF--VPVDVLLM------ILKQYTEKIKVKTQPEINA 179
                   RL+ SM+      N +     +D L         L  ++E I     P ++ 
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 180 LNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------GMQTLEE-----MI 226
            N ++  LCK     +  T+    V +K+ PN   +  L       GM T+       MI
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMI 311

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G  PD  TY   +D  C    + EA  +F+ M  KG    +P   +Y+ +I    +  
Sbjct: 312 QRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGC---APNVISYSTLINGYCKIQ 368

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+++   L   M     +P++ TY  ++ G+C  G++ +A     EM   G  PD+VTY 
Sbjct: 369 RIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYR 428

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L  LC  ++ D+A+ +   +      P +Q+YN++I     +GE + A + +  +  +
Sbjct: 429 ILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSK 488

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G   DV TY +MI+GL     + EA  L  E+   G
Sbjct: 489 GLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG 524



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 16/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------- 217
           E +  K  P +     L+DALCK G+V  A  +    ++  V+P+  TY  L        
Sbjct: 274 EMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRS 333

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  + M++ G AP+  +Y+T I+ +CK + + +A  LFE M  +      P   
Sbjct: 334 EMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELV---PNIV 390

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R+ +  +L   M+ SG +PD+ TY+ +L+ +C    +++A   L+ +
Sbjct: 391 TYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAI 450

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 PDI +YN  +  +C     + A  L+  +   G  P V TY ++I+     G  
Sbjct: 451 EGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLL 510

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A + + EM+  GC+ D  TY ++  G    ++   A  LL+E++ +G  
Sbjct: 511 AEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFS 561



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 89/204 (43%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +A ++ ++          SL   M + G   DV T   V+   C   +V+  +  
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L ++   G+ PD  T+   ++ LC      EAL L+ +M+  G  P+  TY  LI    +
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G    A      M ++ C  +V TY  +ID LF   +V EA  +  E++ KG+      
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           ++S +  L    +   +  L + M
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEM 275



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 1/158 (0%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EA      M +   PP +V +   L  + + K+    L L  +M  +G    V T  +
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I+ +  L   D  F    ++ K G   D  T+  +I GL    K+ EA  L +++V +G
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 443 LKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHMRKFYNP 479
            +     + + +  L  +G+   AI  L   ++K   P
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEP 212


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E +     P++   + L+   C  G L D      K +  ++ P+  T++IL      
Sbjct: 219 YSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCK 278

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++ G  PD  TY + +D +C  + V +A  +F  M   G T     
Sbjct: 279 EGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVT---AN 335

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y IMI    +  +++E  +L   M     +PDV TY  +++G+C +GK+  A K ++
Sbjct: 336 VQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVD 395

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G P D +TYN  L  LC N   D+A+ L  +M + G  P + TY +LI    + G
Sbjct: 396 EMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGG 455

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               A   + ++  +G    V TY VMI G  D    ++A  LL ++ + G
Sbjct: 456 RLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNG 506



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 23/330 (6%)

Query: 165 YTEKIKVKTQPEINAL-------NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNI 216
           Y   I +  + E N +       N+L++   + G   ++ ++   + K   +PNA T   
Sbjct: 72  YQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTT 131

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             +   ++++ +G   +   Y T I+  CK   V + +   + +R   
Sbjct: 132 LIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK---VGQTSAALQLLRRVD 188

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
             +  P    Y  +I ++ +   + E F L   M++ G  PDV TY  ++ G C+ GK+ 
Sbjct: 189 GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLN 248

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +A     +M ++   PD+ T++  +   C      EA  +   M++ G  P V TY  L+
Sbjct: 249 DAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLM 308

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             Y  + + + A   ++ M + G   +V +Y +MI+G     KV+EA  L +E+  K + 
Sbjct: 309 DGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNII 368

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
                ++S +  L   G +    KL D M 
Sbjct: 369 PDVVTYNSLIDGLCKSGKISYALKLVDEMH 398



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 16/226 (7%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           ++ + +F +   +     +FEF +  GS                LV+ +  +   SL   
Sbjct: 38  HSLVSSFNRILNINPTPPIFEFGKILGS----------------LVKINCYQTAISLHRE 81

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M  +G   D+ T+  ++      G    ++     +  KGY P+ +T    +K LC    
Sbjct: 82  MEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQ 141

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             +AL  + +++ +G   +   Y  LI+   ++G+   A +    +D +    +V  Y  
Sbjct: 142 IHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNT 201

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +ID +     V EA  L  E+V+KG+      + + +    ++G L
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKL 247


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 144/291 (49%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           Y E +  +  P++   + L+   C  G + YA  +  R + + + PN  T++IL      
Sbjct: 221 YCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCK 280

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++     D  TYN+ +D +C  + V +A  LF  M  +G T   P 
Sbjct: 281 EGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVT---PD 337

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y+IMI    +   ++E   L   M      P+V TY  +++G+C +G+   A + ++
Sbjct: 338 VWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVD 397

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G P +I+TYN  L  +C N + D+A+ L  ++ E G  P + TY +LI+   ++G
Sbjct: 398 EMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVG 457

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             D A + + ++  +G + ++ TY  +I+G  +    +E   +L ++ + G
Sbjct: 458 RLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNG 508



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 152/347 (43%), Gaps = 24/347 (6%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTEKI 169
           Y+ +ID +   K     F L C M+      + V        F  V  L   +  +   I
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL----------- 217
                P +   ++L+D  CK G V  A+ +    +K  VK +  TYN L           
Sbjct: 261 SDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVN 320

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                   M Q G  PD ++Y+  I+ FCK +MV EA  LFE M  K      P   TY 
Sbjct: 321 KAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIF---PNVVTYN 377

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L ++ R      L+  M + G   ++ TY  +L+ +C    V++A   L ++  K
Sbjct: 378 SLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEK 437

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PDI TY   +  LC     D+A +++  ++  G  P++ TY  LI+ +   G  D  
Sbjct: 438 GIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEG 497

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                +M   GC  +  TY ++I  LF+  + ++A  LL E++ +GL
Sbjct: 498 LAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 17/313 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LC+ G    A  + +RV  K V+PN   Y+ +                  EM+   
Sbjct: 169 LINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKR 228

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +PD  TY++ I  FC    +  A DLF  M +      +P   T++I+I    +  ++ 
Sbjct: 229 ISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNI---NPNVYTFSILIDGFCKEGKVR 285

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  ++L  M+      DV TY  +++G CL  +V +A      M  +G  PD+ +Y+  +
Sbjct: 286 EAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMI 345

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  DEA++L+  M     +P+V TYN L+    + G    A E   EM  RG  
Sbjct: 346 NGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQP 405

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            ++ TY  ++D +   + V++A  LL ++  KG++     +   +  L  +G L    K+
Sbjct: 406 SNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKV 465

Query: 470 -SDHMRKFYNPVI 481
             D + K Y+P I
Sbjct: 466 FEDLLVKGYSPNI 478



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 3/232 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G  PD  T N  ++ F +   +  +  +F  +  KG     P A T+ I+I  L
Sbjct: 82  QQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGY---HPDAVTFTILIKGL 138

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
                + +       ++  G   D  +Y  ++ G+C  G+ + A + L  +  K   P++
Sbjct: 139 CLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNV 198

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V Y+  +  +C +K  ++A  LY  M+     P V TY+ LIS +  +G+   A + ++ 
Sbjct: 199 VMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNR 258

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           M       +V T+ ++IDG     KV EA  +L  ++ K +KL    ++S +
Sbjct: 259 MISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLM 310



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 120/292 (41%), Gaps = 32/292 (10%)

Query: 159 LMILKQYTEKIKVKTQPEINAL-------NLLLDALCKCGLVDYAETICKRVKNKVKPNA 211
           L+  KQY   + +  Q E N +       NLL++   + G + ++ ++            
Sbjct: 68  LLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV------------ 115

Query: 212 NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                       ++++ G+ PD  T+   I   C    V +A    + +  +G  +   +
Sbjct: 116 ----------FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVS 165

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I  L +    +    LL  +      P+V  Y  +++ MC    V +A+    
Sbjct: 166 ---YGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYC 222

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM +K   PD+VTY+  +   C       A+ L+ RMI     P+V T+++LI  + + G
Sbjct: 223 EMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEG 282

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A      M K+    DV TY  ++DG     +V +A  L   +  +G+
Sbjct: 283 KVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGV 334



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 17/147 (11%)

Query: 172 KTQPE-INALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------ 217
           + QP  I   N +LDA+CK   VD A  +  ++K K ++P+  TY +L            
Sbjct: 402 RGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDD 461

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +  E+++  G++P+ +TY + I+ FC      E   +   M+  G     P A TY I
Sbjct: 462 AQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCI---PNAITYEI 518

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCL 304
           +I +L + D  ++   LL  MI  G L
Sbjct: 519 LIHSLFEKDENDKAEKLLREMIARGLL 545



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 2/208 (0%)

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LF  +  K + I  P A  +  ++ +L++  + +   SL   M  +G  PD  T   ++ 
Sbjct: 44  LFNRLLHKNNPI--PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMN 101

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
                G ++ ++    ++  KGY PD VT+   +K LC      +AL  + +++  G   
Sbjct: 102 CFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQL 161

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
              +Y  LI+    +GE   A +    +D +    +V  Y  +ID +     V +A  L 
Sbjct: 162 DQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLY 221

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            E+V+K +      + S +    V+G L
Sbjct: 222 CEMVSKRISPDVVTYSSLISGFCVVGKL 249



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           N   PP I  +   L  L   K    AL L  +M   G  P   T N+L++ + +LG   
Sbjct: 52  NNPIPPAI-EFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIK 110

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            +F  + ++ K+G   D  T+ ++I GL    +V +A +  ++VV +G +L    + + +
Sbjct: 111 FSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLI 170

Query: 455 MQLSVIGDLGAIHKL 469
             L  +G+  A  +L
Sbjct: 171 NGLCRVGETKAAVQL 185


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 152/335 (45%), Gaps = 62/335 (18%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P++   N+L+   C  G +D A  +  ++ K+  KP   TY IL             M+
Sbjct: 178 EPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMK 237

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR--TKGSTISS--------- 269
            L+EM+  G  PD +TYN  ++  CK  M+  A   FEF+   +K   ++          
Sbjct: 238 LLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRA---FEFLSRISKNGCVAGVSTYNILLR 294

Query: 270 ------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
                                   P   TY+ +I AL ++ +++E  ++L  M      P
Sbjct: 295 DLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAP 354

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           D  +Y  ++  +C  GKV+ A +FL++M + G+ PDI++YN  L  LC N N DEAL ++
Sbjct: 355 DGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIF 414

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            ++ EVGC P+  +YN L    +  G+   A     EM   G   D  TY  +I      
Sbjct: 415 EKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLI------ 468

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
                +C   + +V++ ++L    F+S   Q +VI
Sbjct: 469 -----SCLCRDGLVDQAIELLVDMFESEKCQPTVI 498



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 18/309 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           +K   E +    +P+    N++++ +CK G++D A     R+ KN      +TYNIL   
Sbjct: 236 MKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRD 295

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G + + +M+  G  P+  TY+T I   C+   + EA ++ + M+ K     
Sbjct: 296 LLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKAL--- 352

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   +Y  +I AL +  +++     L  MI+ G LPD+ +Y  +L  +C  G  +EA  
Sbjct: 353 APDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALN 412

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E++G  G PP+  +YN     L  + +   AL +   M+  G  P   TYN LIS   
Sbjct: 413 IFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLC 472

Query: 389 ELGEPDGAFETWHEM-DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
             G  D A E   +M +   C   V +Y  ++ GL    ++ +A  +L  +VN+G  LP 
Sbjct: 473 RDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGC-LPN 531

Query: 448 RKFDSYLMQ 456
               + L+Q
Sbjct: 532 ETTYTLLIQ 540



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 4/259 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           E+++    PD F YN  I  FCKA  V  A+ + + M+ +G     P   TY I+I    
Sbjct: 136 EILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGF---EPDVVTYNILIGNFC 192

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              R++    ++  ++   C P V TY  ++E     G ++EA K L+EM ++G  PD  
Sbjct: 193 GRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRY 252

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +  +C     D A     R+ + GC   V TYN+L+      G+ +   +   +M
Sbjct: 253 TYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDM 312

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             +GC  +  TY  +I  L    K++EA  +L+ +  K L      +D  +  L   G +
Sbjct: 313 LVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKV 372

Query: 464 G-AIHKLSDHMRKFYNPVI 481
             AI  L D +   + P I
Sbjct: 373 DLAIEFLDDMISGGHLPDI 391



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 27/300 (9%)

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLE 223
           Q  E ++   +P++ A N ++   CK   VD+A  +  R+K +                 
Sbjct: 133 QVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKR----------------- 175

Query: 224 EMIQMGHAPDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
                G  PD  TYN  I  FC + R+      + + ++        PT  TY I+I A 
Sbjct: 176 -----GFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDN----CKPTVITYTILIEAT 226

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           +    ++E   LL  M++ G  PD  TY  V+ GMC  G ++ A++FL  +   G    +
Sbjct: 227 ITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGV 286

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            TYN  L+ L +    +   +L   M+  GC P+  TY+ LI+     G+ D A      
Sbjct: 287 STYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKV 346

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M ++  A D  +Y  +I  L    KV+ A   L+++++ G       ++S L  L   G+
Sbjct: 347 MKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGN 406



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           + +E    L HM+N G  PDV    ++++G     K+E+A + +E +   G  PD+  YN
Sbjct: 92  KYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYN 150

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C     D A ++  RM + G  P V TYN+LI  +   G  D A     ++ K 
Sbjct: 151 AVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKD 210

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            C   V TY ++I+       ++EA  LL+E++++GL+
Sbjct: 211 NCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLR 248



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 23/164 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+I + N +L +LCK G  D A  I +++      PNA +YN L             +  
Sbjct: 389 PDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGM 448

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA----ADLFEFMRTKGSTISSPTAKTYAI 277
           + EM+  G  PD  TYN+ I   C+  +V +A     D+FE      S    PT  +Y  
Sbjct: 449 ILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFE------SEKCQPTVISYNT 502

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           +++ L +  R+ +   +L  M+N GCLP+ +TY  +++G+  AG
Sbjct: 503 VLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAG 546


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 145/292 (49%), Gaps = 15/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL--GM-- 219
           + E +     PE+     +++  CK G +D A ++ +R+K   + P+ + Y+ L  G+  
Sbjct: 180 FEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCK 239

Query: 220 ----QTLEEMIQM--GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   E+ +M  G   D   Y + I   CKA  + EA  +   M   G    +P   
Sbjct: 240 HDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGC---APDPV 296

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y ++I +L +++R+ E   L+   +   C+P V     +++G+C + +VEEA   LE M
Sbjct: 297 SYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERM 356

Query: 334 GNKG-YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
              G   P +VTY+  +  LC     D+A  +  +M   GC P V TY  +I  + ++G 
Sbjct: 357 LETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGR 416

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D A E +  M +RGCA DV  Y ++I G    +KV+EA  ++EE+  +G++
Sbjct: 417 LDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQ 468



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 166/392 (42%), Gaps = 31/392 (7%)

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN--------KVF 152
           FF WA  +  + H     N ++++  +     + +R+    L  + R +        + F
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGF 62

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNA 211
              + +   +    E       P I     L+  LC+    D A  I  + +  KVKP+A
Sbjct: 63  CKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDA 122

Query: 212 NTYNI------------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
             Y +            L     E M+Q G  PD  TY   + +  KA    +   +FE 
Sbjct: 123 FLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEE 182

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M +KG    SP   TYA ++    +  R+++  SL+  +  +G  P  S Y  +++G+C 
Sbjct: 183 MLSKGH---SPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCK 239

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
             + +EA +  E     G   D++ Y  F+  LC     DEA  ++ +MIE GC P   +
Sbjct: 240 HDRHDEARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVS 297

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN++I    +      A E   +  +R C   V    V++DGL    +VEEAC +LE ++
Sbjct: 298 YNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERML 357

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
             G + P     S +   +VI  L    +L D
Sbjct: 358 ETGDRAP-----SVVTYSAVIDGLCKADRLDD 384



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 4/216 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +MI+ G APD  +YN  I + CK   V+EA +L +    +      P      +++  L 
Sbjct: 285 KMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM---PGVPVCTVLVDGLC 341

Query: 284 QNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           ++ R+EE   +L  M+ +G   P V TY  V++G+C A ++++AY  L++M   G  PD+
Sbjct: 342 KSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDV 401

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +   C     DEA  L+ RM E GC   V  YN+LI  Y    + D A     E
Sbjct: 402 VTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEE 461

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           M  RG   +V +   ++DGL   S+VEEA  L+E++
Sbjct: 462 MAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 26/350 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--- 217
           L+ + + I +K +P+     +++  LCK   +D A +  +R V++   P+  TY +L   
Sbjct: 107 LQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHS 166

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                    G Q  EEM+  GH+P+  TY T ++ +CKA  + +A  L   MR    T  
Sbjct: 167 LFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSL---MRRLKGTGR 223

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP+   Y+ +I  L ++DR +E   L    + +G + DV  Y   + G+C AGK++EA  
Sbjct: 224 SPSGSLYSTLIDGLCKHDRHDEARELF--EMAAGDVQDVIVYTSFISGLCKAGKLDEAKA 281

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M   G  PD V+YN  +  LC +    EA  L  + +E  C P V    +L+    
Sbjct: 282 VHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLC 341

Query: 389 ELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           +    + A      M + G  A  V TY  +IDGL    ++++A  +L+++   G     
Sbjct: 342 KSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDV 401

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLR 497
             + + +     +G L       D  R+ +  +  R  AL+     I +R
Sbjct: 402 VTYTAIIDAFCKVGRL-------DEARELFQRMHERGCALDVVAYNILIR 444



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 131/313 (41%), Gaps = 55/313 (17%)

Query: 49  SDVAKLYEAIIDNSNAYDNMEKAL--------DSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           S    LY  +ID    +D  ++A         D   V + T  + G+ +  + +E  A  
Sbjct: 224 SPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVH 283

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
             M    +   A +P++YN++I  L                     ++N+V    +    
Sbjct: 284 VKMI---EAGCAPDPVSYNVIIYSLC--------------------KDNRVSEAKE---- 316

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL- 217
           ++ Q  E+   K  P +    +L+D LCK   V+ A  I +R+       P+  TY+ + 
Sbjct: 317 LMDQAMER---KCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVI 373

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                          L++M + G  PD  TY   ID FCK   + EA +LF+ M  +G  
Sbjct: 374 DGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCA 433

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           +       Y I+I    +  +++E  +++  M   G  P+V +   +++G+C   +VEEA
Sbjct: 434 LD---VVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEA 490

Query: 327 YKFLEEMGNKGYP 339
              +E+M  +  P
Sbjct: 491 RLLMEKMNFESLP 503



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 47/247 (19%)

Query: 44  SSDSVSDVAKLYEAIIDN--SNAYDNMEKALDSL---GVPLTTDSVVGVLQRFQFEEKIA 98
           + D VS    +Y    DN  S A + M++A++     GVP+ T  V G+ +  + EE   
Sbjct: 292 APDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACV 351

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
               M      + A   + Y+ +ID L     KA +      +L  M+R   V       
Sbjct: 352 ILERML--ETGDRAPSVVTYSAVIDGLC----KADRLDDAYVVLQKMRRAGCV------- 398

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
                           P++     ++DA CK G +D A  + +R+  +    +   YNIL
Sbjct: 399 ----------------PDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNIL 442

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                        +  +EEM   G  P+  + +T +D  CK   V EA  L E M  +  
Sbjct: 443 IRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMNFESL 502

Query: 266 TISSPTA 272
             S P +
Sbjct: 503 PDSDPVS 509


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 21/277 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+DAL +  +V     +C  + K+ V+PN  TYN+L              + L+EM  
Sbjct: 138 NHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMAT 197

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD+ TY T +   C    V EA ++         + + P A +Y  +I+AL +  R
Sbjct: 198 KGCPPDDVTYGTIVSALCTLGRVDEATEVL--------SAAPPVAASYNAVILALCREFR 249

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           M+E F+++G M+  G  P+V TY  ++   C AG++  A   L  M   G  P++ T+  
Sbjct: 250 MQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTA 309

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  L ++    +AL ++  M+  G  PS  +YN+LI     +G+  GA    ++M++ G
Sbjct: 310 LVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHG 369

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           C  +  TY  +IDG      ++ A  +  ++   G K
Sbjct: 370 CFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCK 406



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 188/480 (39%), Gaps = 78/480 (16%)

Query: 46  DSVSDVAKLYEAIIDNSNA---YDNMEKALDSL---GVPLTTDSVV---GVLQRFQFEEK 96
           +   D A+ +EA +    A    D ++  L  +   GVP T  ++V   G   R    ++
Sbjct: 55  EDAGDAARAHEAAVRRLAAAGDVDGVQLELQEMRLRGVPCTEGALVAAVGAFARAGAPDR 114

Query: 97  IAFRFFMWAGHQDNYAH--EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
            A + F  A H    A    P  YN +ID L           LVC  +        VF  
Sbjct: 115 -ALKTFYRAVHDLGCARPTAPRLYNHLIDALLRENM-VGAVALVCGNMRKDGVQPNVFT- 171

Query: 155 VDVLLMIL----------KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
            ++L+  L          K   E       P+      ++ ALC  G VD A      V 
Sbjct: 172 YNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEA----TEVL 227

Query: 205 NKVKPNANTYN--ILGM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKA----- 247
           +   P A +YN  IL +            + +M+  G  P+  TY T ++ FCKA     
Sbjct: 228 SAAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRM 287

Query: 248 ------RMVT------------------------EAADLFEFMRTKGSTISSPTAKTYAI 277
                 RMV                         +A D+++ M  +G    +P+  +Y +
Sbjct: 288 ACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGW---APSTVSYNV 344

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L     ++   S+L  M   GC P+  TY  +++G   AG ++ A     +M   G
Sbjct: 345 LIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSG 404

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P++V Y   + V C     ++A  L  +M+   C P+  T+N LI           A 
Sbjct: 405 CKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRAL 464

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             +HEM + GC  +  TY  ++ GLF      +A  ++ E+ N G++L    +++ +  L
Sbjct: 465 GVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGL 524



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           QP +     +++A CK G +  A  I  R V     PN  T+  L             + 
Sbjct: 266 QPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALD 325

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             + M+  G AP   +YN  I   C    +  A+ +   M   G     P A+TY+ +I 
Sbjct: 326 MWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCF---PNARTYSTLID 382

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   ++   S+   M  SGC P+V  Y  ++   C      +A   +++M  +  PP
Sbjct: 383 GFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPP 442

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VT+N  ++ LC+ +    AL ++  M   GC P+ +TYN L+   F  G    A +  
Sbjct: 443 NTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMV 502

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            EM   G    + TY  ++ GL       EA F +  ++ +G++
Sbjct: 503 IEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQ 546



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 125/282 (44%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P   + N+L+  LC  G +  A ++   + ++   PNA TY+ L             +  
Sbjct: 337 PSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISI 396

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +M + G  P+   Y   +  FCK  M  +A  L + M  +      P   T+  +I +
Sbjct: 397 WNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENC---PPNTVTFNTLIRS 453

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R+     +   M   GC P+  TY E+L G+   G   +A + + EM N G    
Sbjct: 454 LCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELS 513

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +  LC  + G EA+   GRMI  G  P   T+  +I  Y + GE   A     
Sbjct: 514 LVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILG 573

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M+   C +++  Y +++  L +  K+E+A   L +++ +G+
Sbjct: 574 AMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGI 615



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 9/236 (3%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN  ID   +  MV   A +   MR  G     P   TY +++ AL QN R+     +L 
Sbjct: 137 YNHLIDALLRENMVGAVALVCGNMRKDGV---QPNVFTYNLLVRALCQNHRVGAARKMLD 193

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M   GC PD  TY  ++  +C  G+V+EA + L        PP   +YN  +  LC   
Sbjct: 194 EMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAA-----PPVAASYNAVILALCREF 248

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
              E   + G M+  G  P+V TY  +++ + + GE   A      M   GC  +V T+ 
Sbjct: 249 RMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFT 308

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSD 471
            ++ GLF+  +V +A  + + +V +G       ++  +  L  +GDL GA   L+D
Sbjct: 309 ALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLND 364



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 16/262 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTY-NILGM-----------QT 221
           P     + L+D   K G +D A +I   + ++  KPN   Y N++G+             
Sbjct: 372 PNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESL 431

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++M+     P+  T+NT I + C  R V  A  +F  MR  G     P  +TY  ++  
Sbjct: 432 IDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGC---PPNGRTYNELLHG 488

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +     +   ++  M N G    + TY  V+ G+C      EA  F+  M  +G  PD
Sbjct: 489 LFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPD 548

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+   +   C       A  + G M  V C  ++  Y +L++      + + A     
Sbjct: 549 AFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLL 608

Query: 402 EMDKRGCAQDVDTYCVMIDGLF 423
           +M   G   +  T+ V++ G+F
Sbjct: 609 KMLYEGIYPNTVTWNVLVRGVF 630


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 190/448 (42%), Gaps = 48/448 (10%)

Query: 40  VFDESSDSVSDVAKLYEAIIDNSNAY--DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI 97
           V D S   +S ++ L E    N+N     ++E ALD  G+  +   V  +  R      +
Sbjct: 62  VLDFSKTDLSTISNLLE----NTNVVPGSSLESALDETGIEPSLQLVQALFDRLSSSPML 117

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPV 155
               F WA  +  +   P  ++ +I+ L     KA++F +  S++    R+++    V  
Sbjct: 118 LHSVFKWAEMKPGFTLSPSLFDSVINSLC----KAREFEIAWSLVFDRVRSDEGSNLVSA 173

Query: 156 DVLLMILKQYTEKIKV-----------------KTQPEINALNLLLDALCKCGLVDYAET 198
           D  ++++++Y     V                 K+  E+  L +LLDALCK G V  A  
Sbjct: 174 DTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSASELKLLEVLLDALCKEGYVREASV 233

Query: 199 ICKRVKNKVK----PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
             +R +  +     P+   +NIL              +  EEM  M   P   TY T I+
Sbjct: 234 YLERRRGMMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIE 293

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            +C+ R V  A ++ E M+     +   T   +  +I  L +  R+ E   ++       
Sbjct: 294 GYCRMRRVEIAMEILEEMKMAEMEL---TFMVFNPIIDGLGEAGRLSEALGMMERFFVCE 350

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P + TY  +++  C AG +  A K L+ M  +G  P   TYN F K    +   +E +
Sbjct: 351 SGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFKYFSKHNKTEEGM 410

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            LY ++IE G  P   TY++++ M  E G+   A +   EM  RG   D+ T  +++  L
Sbjct: 411 NLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDPDLLTTTMLMHLL 470

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKF 450
                +EEA    +  V +G+   Y  F
Sbjct: 471 CRLDMLEEAFEEFDNAVRRGIIPQYITF 498



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 16/171 (9%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           ++ P I   N L+   CK G +  A  I K +  + V+P  +TYN              G
Sbjct: 350 ESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFKYFSKHNKTEEG 409

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M    ++I+ GH+PD  TY+  +   C+   ++ A  + + M+ +G     P   T  ++
Sbjct: 410 MNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGI---DPDLLTTTML 466

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           +  L + D +EE F    + +  G +P   T+K +  G+   G  + A + 
Sbjct: 467 MHLLCRLDMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMTDMAKRL 517



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 30/301 (9%)

Query: 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           ++D+++T    + N ++   NT  + G      + + G  P         D    + M+ 
Sbjct: 62  VLDFSKTDLSTISNLLE---NTNVVPGSSLESALDETGIEPSLQLVQALFDRLSSSPMLL 118

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---GCLPDVS 308
            +  +F++   K     SP+   +  +I +L +    E  +SL+   + S     L    
Sbjct: 119 HS--VFKWAEMKPGFTLSPS--LFDSVINSLCKAREFEIAWSLVFDRVRSDEGSNLVSAD 174

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP------DIVTYNCFLKVLCDNKNGDEA- 361
           T+  ++     AG V++A +  E    + Y P      ++      L  LC      EA 
Sbjct: 175 TFIVLIRRYARAGMVQQAIRAFE--FARSYEPVCKSASELKLLEVLLDALCKEGYVREAS 232

Query: 362 --LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
             L     M++    PSV+ +N+L++ +F   +   A + W EM        V TY  +I
Sbjct: 233 VYLERRRGMMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLI 292

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH---MRKF 476
           +G     +VE A  +LEE+    ++L +  F+       +I  LG   +LS+    M +F
Sbjct: 293 EGYCRMRRVEIAMEILEEMKMAEMELTFMVFN------PIIDGLGEAGRLSEALGMMERF 346

Query: 477 Y 477
           +
Sbjct: 347 F 347


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    N+L+ A   CG++D A  I   +++  VKP+  TY  +             M+ 
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 454

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G APD + YN  I  FC    + +A +L   +   G  +       ++ +I  
Sbjct: 455 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD---IVFFSSIINN 511

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  PD   Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 512 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 571

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +   C     DE L L+  M++ G  PS   Y+++I   FE G    A   +H
Sbjct: 572 VVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFH 631

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A D+ TY +++ GLF     +EA FL +E+    +K+
Sbjct: 632 EMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 675



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P++   N ++ ALCK   +D AE   +++ NK V PN  TYN L      
Sbjct: 245 FKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 304

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD  T +  + + CK   + EA D+F+ M  KG    +P 
Sbjct: 305 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ---NPD 361

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  PD  T+  +++     G +++A     
Sbjct: 362 VFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFN 421

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  PD+VTY   +  LC     D+A+  + +MI+ G  P    YN LI  +   G
Sbjct: 422 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 481

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A E   E+   G   D+  +  +I+ L    +V +A  + +  VN GL
Sbjct: 482 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 533



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 136/337 (40%), Gaps = 53/337 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNIL------------GM 219
           P++ + ++LL +LC  G    A+ + + +        PN   YN +              
Sbjct: 183 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 242

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              +EM+Q G  PD  TYN+ +   CKAR + +A     F+R   +    P   TY  +I
Sbjct: 243 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAE---AFLRQMVNKRVLPNNWTYNNLI 299

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                  + +E   +   M     LPDV T   ++  +C  GK++EA    + M  KG  
Sbjct: 300 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 359

Query: 340 PDIVTY-----------------------------------NCFLKVLCDNKNGDEALRL 364
           PD+ +Y                                   N  +K   +    D+A+ +
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 419

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M + G  P V TY  +I+    +G+ D A E +++M  +G A D   Y  +I G   
Sbjct: 420 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 479

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              + +A  L+ E++N G+ L    F S +  L  +G
Sbjct: 480 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 516



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   ++     +LEG C A
Sbjct: 103 RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEA 162

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +Y+  LK LCD     +A  L   M E G  C P+V
Sbjct: 163 KRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNV 222

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN +I  +F+ G+ + A + + EM +RG   D+ TY  ++  L     +++A   L +
Sbjct: 223 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 282

Query: 438 VVNK 441
           +VNK
Sbjct: 283 MVNK 286



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 16/250 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P ++TY IL             +    ++++ G   +    N  ++ FC+A+   EA 
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKE 312
           D+      +   +  P   +Y+I++ +L    +  +   LL  M   G  C P+V  Y  
Sbjct: 170 DILLHRTPELGCV--PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 227

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V++G    G V +A    +EM  +G PPD+VTYN  +  LC  +  D+A     +M+   
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 287

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+  TYN LI  Y   G+   A   + EM +     DV T  +++  L    K++EA 
Sbjct: 288 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 347

Query: 433 FLLEEVVNKG 442
            + + +  KG
Sbjct: 348 DVFDTMAMKG 357



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 48/293 (16%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L    ++G  PD F+Y+  + + C      +A DL   M  +G  + SP    Y  +I  
Sbjct: 173 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMM-AEGGAVCSPNVVAYNTVIDG 231

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + +   L   M+  G  PD+ TY  V+  +C A  +++A  FL +M NK   P+
Sbjct: 232 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 291

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +          EA+R++  M      P V T +ML+    + G+   A + + 
Sbjct: 292 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 351

Query: 402 EMDKRGCAQDVDTYCVMIDG------------LFD-----------------------CS 426
            M  +G   DV +Y +M++G            LFD                       C 
Sbjct: 352 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCG 411

Query: 427 KVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +++A  +  E+ + G+K   + YR         +VI  L  I K+ D M KF
Sbjct: 412 MLDKAMIIFNEMRDHGVKPDVVTYR---------TVIAALCRIGKMDDAMEKF 455



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V   P+    N+L+D  C  G ++ A  +    V   ++PN   Y  L          
Sbjct: 529 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI 588

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G+    EM+Q G  P    Y+  ID   +A     A   F  M   G  +      TY
Sbjct: 589 DEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD---ICTY 645

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I++  L +N   +E   L   +       ++ T   +++GM    +VEEA      +  
Sbjct: 646 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 705

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               P +VTY+  +  L      +EA  ++  M   GC P+ +  N ++    +  E   
Sbjct: 706 SRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVR 765

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     ++D+R  + +  T  +++D
Sbjct: 766 AGAYLSKIDERNFSLEHLTAMLLVD 790


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 187/430 (43%), Gaps = 47/430 (10%)

Query: 82  DSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM 141
           D  V VL  F+   ++A R F WA  Q  +      +  +++IL+        + ++  +
Sbjct: 388 DLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERV 447

Query: 142 LDY-MKRNNKVF--------VPVDVLLMILKQYTEK-------------IKVKTQPEINA 179
           ++  M R   V         V V +L +++  Y++K             IK +  P++  
Sbjct: 448 INANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKN 507

Query: 180 LNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMI 226
            N +L  L    L+  A  + + +    +KP   TYN L            G+  L EM 
Sbjct: 508 CNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQ 567

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G AP++ TYN  I+   K     +A  L   M   G  +S   A TY  +I       
Sbjct: 568 RRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVS---AYTYNPLIYGYFNKG 624

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            + E  SL   M+  G  P V+TY   + G+C  G++ +A + L +M      PD+V+YN
Sbjct: 625 LLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYN 684

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C   N  +A  L+  +  +  +P++ TYN L+      GE + A +   EM   
Sbjct: 685 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 744

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           G A D+ TY ++++G      +  A    +E++++GL+L     DSY     ++G+L   
Sbjct: 745 GIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLEL-----DSYAYATRIVGEL--- 796

Query: 467 HKLSDHMRKF 476
            KL D  R F
Sbjct: 797 -KLGDTSRAF 805



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 126/283 (44%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQT--------- 221
           +P I   N LLD+ CK G V     +   ++ +   PN  TYN+L  G+           
Sbjct: 537 KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKG 596

Query: 222 -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM++ G     +TYN  I  +    ++ EA  L E M  KG+   SPT  TY   I 
Sbjct: 597 LIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGA---SPTVATYNSFIY 653

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  RM +    L  M+ +  LPDV +Y  ++ G C  G + +A+   +E+ +    P
Sbjct: 654 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 713

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            IVTYN  L  LC     + A +L   MI  G  P + TY +L++   ++G    A E +
Sbjct: 714 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFF 773

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM   G   D   Y   I G         A  L EE++ KG 
Sbjct: 774 DEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGF 816



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 3/237 (1%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I  + K  MV +   +F+ M     +  SP  K    ++  L   D M +   +   M  
Sbjct: 477 IWVYSKKSMVEQCLSVFDKMI---KSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 533

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  P + TY  +L+  C  GKV++    L EM  +G  P+ VTYN  +  L      ++
Sbjct: 534 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 593

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L G M++ G   S  TYN LI  YF  G    A     EM  +G +  V TY   I 
Sbjct: 594 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIY 653

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
           GL    ++ +A   L +++   L      +++ +     +G+L     L D +R  Y
Sbjct: 654 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 710



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 25/160 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N LLD LC+ G ++ A+ +      KV                EMI  G APD 
Sbjct: 713 PTIVTYNTLLDGLCRQGELEVAQQL------KV----------------EMINEGIAPDI 750

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY   ++  CK   ++ A + F+ M  +G  + S     YA  IV  ++       FSL
Sbjct: 751 VTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDS---YAYATRIVGELKLGDTSRAFSL 807

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
              M+  G  PD+  Y  V++G+C  G +EEA + L++ G
Sbjct: 808 QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKDG 847


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 171/360 (47%), Gaps = 36/360 (10%)

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI--L 162
           +  Q+N+  + L +N + D LSS        R++     +M     +F    +L  I  +
Sbjct: 21  SSSQNNFQSKSLHFNTLDDALSSFH------RML-----HMHPPPPIFEFAKLLTSIAKM 69

Query: 163 KQYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTY 214
           K Y+  + +  +       P++  L +++++ C    VD+A ++  ++ K   +P+  T+
Sbjct: 70  KHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATF 129

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
             L             +   ++M+  G  P+  TY T ++  CK R +TEA +LF  M  
Sbjct: 130 TTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIA 189

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           KG    SP   TY  +I AL      +   +LL  M+ S  +P+V +   V++ +C  GK
Sbjct: 190 KGI---SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGK 246

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V EA+  ++ M   G  PD+VTY   +   C     DEA++++  M+  GC  +V +YN 
Sbjct: 247 VTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNT 306

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ Y ++   D A   + EM ++    +  TY  +I GL    ++++A  L  E+V  G
Sbjct: 307 LINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACG 366



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%), Gaps = 16/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           E +K K  P + +LN+++DALCK G V  A  +    ++  V+P+  TY  L        
Sbjct: 221 EMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRS 280

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M++ G   +  +YNT I+ +CK + + +A  LFE M  +      P   
Sbjct: 281 EMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELI---PNTM 337

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ +I  L    R+++  +L   M+  G +P++ TY  +L+ +C   ++ EA   L+ +
Sbjct: 338 TYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI 397

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 PD+  YN  +  +C   + + A  L+  +   G  P V T+N++I    + G  
Sbjct: 398 EGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLL 457

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           D A + + EMD+ GC ++  TY  +  GL   +K   A  LLEE++ +G  
Sbjct: 458 DEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFS 508



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 134/338 (39%), Gaps = 54/338 (15%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANT 213
           VD  L +L +    +K+  QP+      L+  LC  G +  A +   K V    +PN  T
Sbjct: 107 VDFALSVLAKI---LKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVT 163

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAI-------------------- 241
           Y  L             +    EMI  G +PD FTYN+ I                    
Sbjct: 164 YGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 223

Query: 242 ---------------DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
                          D  CK   VTEA D+ + M   G     P   TYA ++       
Sbjct: 224 KSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGV---EPDVVTYAALMDGHCLRS 280

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            M+E   +   M+ +GC+ +V +Y  ++ G C   ++++A    EEM  +   P+ +TY+
Sbjct: 281 EMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYS 340

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC      +A+ L+  M+  G  P++ TY++L+    +      A      ++  
Sbjct: 341 TLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGS 400

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               DV  Y + IDG+     +E A  L   +  +GL+
Sbjct: 401 NLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQ 438



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 204 KNKVKPNANTYNIL--GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +N  +  +  +N L   + +   M+ M   P  F +   + +  K +  +    L + M 
Sbjct: 24  QNNFQSKSLHFNTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMD 83

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           + G     P   T  I+I +    +R++   S+L  ++  G  PD +T+  ++ G+C+ G
Sbjct: 84  SFGI---PPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVG 140

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K+ EA    ++M  +G+ P++VTY   +  LC ++   EAL L+  MI  G  P + TYN
Sbjct: 141 KIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYN 200

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI     L E        +EM K     +V +  +++D L    KV EA  +++ ++  
Sbjct: 201 SLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQG 260

Query: 442 GLK 444
           G++
Sbjct: 261 GVE 263



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 181 NLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL------------GMQTLEE 224
           N L++  CK   +D A    E +C++   ++ PN  TY+ L             +    E
Sbjct: 305 NTLINGYCKIQRIDKAMYLFEEMCRQ---ELIPNTMTYSTLIHGLCHVGRLQDAIALFNE 361

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G  P+  TY+  +D  CK   + EA  L + +  +GS +  P  + Y I I  + +
Sbjct: 362 MVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI--EGSNLD-PDVQVYNIAIDGMCR 418

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              +E    L  ++   G  PDV T+  ++ G+C  G ++EA K   EM   G   +  T
Sbjct: 419 AGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCT 478

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           YN   + L  N     A++L   M+  G    V T  +L+ M  + G
Sbjct: 479 YNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDG 525



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 83/190 (43%)

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           + +++  S    M++    P +  + ++L  +             ++M + G PPD+ T 
Sbjct: 35  NTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTL 94

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +   C     D AL +  +++++G  P   T+  L+     +G+   A + + +M  
Sbjct: 95  TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 154

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G   +V TY  +++GL    ++ EA  L  E++ KG+      ++S +  L  + +   
Sbjct: 155 EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 466 IHKLSDHMRK 475
           +  L + M K
Sbjct: 215 VTTLLNEMVK 224


>gi|115488482|ref|NP_001066728.1| Os12g0456100 [Oryza sativa Japonica Group]
 gi|77555567|gb|ABA98363.1| hypothetical protein LOC_Os12g27060 [Oryza sativa Japonica Group]
 gi|113649235|dbj|BAF29747.1| Os12g0456100 [Oryza sativa Japonica Group]
 gi|125579252|gb|EAZ20398.1| hypothetical protein OsJ_36005 [Oryza sativa Japonica Group]
          Length = 1117

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 185/429 (43%), Gaps = 50/429 (11%)

Query: 58   IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
            I+ +S+ + ++E+AL+   +  T D V  +++R +   + A +FF W G +  Y      
Sbjct: 699  ILSSSDCWSSIEQALEMTSISFTPDLVDAIMKRCKANSRAALQFFSWVGKRSYYMQTTKT 758

Query: 118  YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
            YN  I +  S    AK F+       +M+                  Y E I  +  P +
Sbjct: 759  YNTAIKLAGS----AKDFK-------HMRH----------------LYREMIWAECCPTV 791

Query: 178  NALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGM--------------QTL 222
            +  N+++      GL + A ET  +  +   +P+  TY+ L M              +  
Sbjct: 792  DTWNVMICQYGNAGLTEMALETFYQMKQGGFQPDKTTYSHLIMYLSRRKGRKVDAAVKIF 851

Query: 223  EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             EM + G+ PDN    T +   C+  M+  A      +   G +I +     Y+I+I +L
Sbjct: 852  HEMCRAGYIPDNGMVCTYLSVLCECGMIDRAESSVVLLCKHGFSIQA----GYSILIRSL 907

Query: 283  VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             ++DRM E  SL  ++ N GC      Y  ++  +    + E+A   L EM N G     
Sbjct: 908  CRSDRMAEALSLFDNIKNYGCSRSAYMYGSLIHALLRRDRFEDASAKLAEMKNLGIAQST 967

Query: 343  VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
              Y  F+      ++  +A+ +   M E GC P+V TY+ LI  +  +G    A++ +  
Sbjct: 968  HMYTSFMIYYLGKRDVSKAMDVLKEMTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQR 1027

Query: 403  MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
            M  +G   D +TY + +  L    + E+   L+ +++N G+      F + +  L++ G 
Sbjct: 1028 MKLKGPVPDFETYSMFMSCLCKAGRSEDGLQLIHDMLNSGIIPSAVNFRTVVHGLNMEGK 1087

Query: 463  LGAIHKLSD 471
                +KL+D
Sbjct: 1088 ----YKLAD 1092



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 173/417 (41%), Gaps = 36/417 (8%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           ++E+ L++LGV  T   V  VL R   +  + F+FF W      + H    YN M+ I  
Sbjct: 194 SVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGFKFFDWVRQVPGFQHTTETYNAMLYIAG 253

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV--------------K 172
               + + F  +  ++D M +       +    +++  Y +  ++               
Sbjct: 254 ----EERNFGAMEKLMDEMDKE-MCLKDIKTWTIVISSYGKARQIGKMLSTFQAMGKSRH 308

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLE---- 223
              +      +L ALC     + A    K +    +  ++ + +L     G    E    
Sbjct: 309 VAADSKVYRTILHALCNSAKSELALEFYKDMARNTEVGSDIFRLLLCCLAGSDNAEGVFY 368

Query: 224 ---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI+    P+ + Y  A+ +FC +  + EA  +F+ M  K  +I+S +A  + I++ 
Sbjct: 369 VRDDMIKSMKYPEEYCYLEALRSFCVSGKIEEAQKIFQQMMNK--SIASSSA--FEILLR 424

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ RM++   ++ +M  S      +T+  +++G    G+  +A + L+EM   G  P
Sbjct: 425 GLCKDGRMDKALQVMEYM-KSNSSASSATFGSLIDGYLRKGERMKALEVLQEMREYGCVP 483

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
              +Y   ++ L      + A RLY  M E G  P V     LI  +   G    A++ +
Sbjct: 484 LASSYTQLMQHLFAFDQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAF 543

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             +++ G    +  Y V I  L   S+  EA  LL+E++    +   + F   +  L
Sbjct: 544 RNINENGQKPTLKAYTVFIQELCKASRPLEALKLLKEMLESDFRPSEQTFSRIISTL 600



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 26/292 (8%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
           N A   LA     D+  +T+  +  FRL+   L        VF   D          + I
Sbjct: 325 NSAKSELALEFYKDMARNTEVGSDIFRLLLCCLAGSDNAEGVFYVRD----------DMI 374

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------ 217
           K    PE       L + C  G ++ A+ I +++ NK   +++ + IL            
Sbjct: 375 KSMKYPEEYCYLEALRSFCVSGKIEEAQKIFQQMMNKSIASSSAFEILLRGLCKDGRMDK 434

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +Q +E M +   +  + T+ + ID + +     +A ++ + MR  G     P A +Y  
Sbjct: 435 ALQVMEYM-KSNSSASSATFGSLIDGYLRKGERMKALEVLQEMREYGCV---PLASSYTQ 490

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L   D+ E    L   M  +G  PDV     ++ G    G + EA+     +   G
Sbjct: 491 LMQHLFAFDQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAFRNINENG 550

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             P +  Y  F++ LC      EAL+L   M+E    PS QT++ +IS  ++
Sbjct: 551 QKPTLKAYTVFIQELCKASRPLEALKLLKEMLESDFRPSEQTFSRIISTLYD 602



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 218  GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             M  L+EM + G  P   TY+  I       MV+EA D+F+ M+ KG     P  +TY++
Sbjct: 986  AMDVLKEMTENGCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKGPV---PDFETYSM 1042

Query: 278  MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +  L +  R E+   L+  M+NSG +P    ++ V+ G+ + GK + A   L+
Sbjct: 1043 FMSCLCKAGRSEDGLQLIHDMLNSGIIPSAVNFRTVVHGLNMEGKYKLADSVLQ 1096


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 138/293 (47%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---- 217
           K Y + I     P++  LN  +D + K G  +    + + +K  +  P+A +Y+IL    
Sbjct: 503 KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGL 562

Query: 218 -----GMQTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  +T E    M + G   D   YN  ID FCK   V +A  L E M+TKG     
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGF---E 619

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  TY  +I  L + DR++E + L     +     +V  Y  +++G    G+++EAY  
Sbjct: 620 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLI 679

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LEE+  KG  P++ T+N  L  L   +  +EAL  +  M E+ C P+  TY +LI+   +
Sbjct: 680 LEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + + AF  W EM K+G      +Y  MI GL     + EA  L +     G
Sbjct: 740 VRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 196/466 (42%), Gaps = 52/466 (11%)

Query: 40  VFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
            F+ +  +V+D+  + E      +A    E  L +L      + V+GVL+R + +   A 
Sbjct: 28  TFEGNRQTVNDICNVLETGPWGPSA----ENTLSALSFKPQPEFVIGVLRRLK-DVNRAI 82

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK------------- 146
            +F W   +    H P +YN ++ +++    + + F  +  +L  M              
Sbjct: 83  EYFRWYERRTELPHCPESYNSLLLVMA----RCRNFDALDQILGEMSVAGFGPSVNTCIE 138

Query: 147 ------RNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
                 + NK+    DV+ M+        K K +P  +A   L+ A       D   T+ 
Sbjct: 139 MVLGCVKANKLREGYDVVQMMR-------KFKFRPAFSAYTTLIGAFSAVNHSDMMLTLF 191

Query: 201 KRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
           ++++    +P  + +  L             +  L+EM       D   YN  ID+F K 
Sbjct: 192 QQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKV 251

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             V  A   F  +   G     P   TY  MI  L + +R++E   +  H+  +  +P  
Sbjct: 252 GKVDMAWKFFHEIEANG---LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
             Y  ++ G   AGK +EAY  LE    KG  P ++ YNC L  L      DEAL+++  
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE 368

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M +    P++ TYN+LI M    G+ D AFE    M K G   +V T  +M+D L    K
Sbjct: 369 MKKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           ++EAC + EE+  K        F S +  L  +G +   +K+ + M
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 183/439 (41%), Gaps = 85/439 (19%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +A++FF      +    + + Y  MI +L     KA +      M +++++N +V     
Sbjct: 256 MAWKFFHEI-EANGLKPDEVTYTSMIGVLC----KANRLDEAVEMFEHLEKNRRVPCTYA 310

Query: 157 VLLMIL---------KQYT--EKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKRVK 204
              MI+         + Y+  E+ + K   P + A N +L  L K G VD A  + + +K
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370

Query: 205 NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
               PN +TYNIL                       ID  C+A  +  A +L + M+  G
Sbjct: 371 KDAAPNLSTYNIL-----------------------IDMLCRAGKLDTAFELRDSMQKAG 407

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P  +T  IM+  L ++ +++E  ++   M    C PD  T+  +++G+   G+V+
Sbjct: 408 LF---PNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVD 464

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +AYK  E+M +     + + Y   +K   ++   ++  ++Y  MI   C P +Q  N  +
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524

Query: 385 SMYFELGEPDGA-----------------------------------FETWHEMDKRGCA 409
              F+ GEP+                                     +E ++ M ++GC 
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            D   Y ++IDG   C KV +A  LLEE+  KG +       + +   SVI  L  I +L
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE------PTVVTYGSVIDGLAKIDRL 638

Query: 470 SDHMRKFYNPVIARRLALN 488
            D     +    ++R+ LN
Sbjct: 639 -DEAYMLFEEAKSKRIELN 656



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 4/227 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN-DRMEECFSLLGHMINSGCLPDVS 308
           V  A + F +   +      P +    ++++A  +N D +++   +LG M  +G  P V+
Sbjct: 78  VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQ---ILGEMSVAGFGPSVN 134

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T  E++ G   A K+ E Y  ++ M    + P    Y   +       + D  L L+ +M
Sbjct: 135 TCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQM 194

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            E+G  P+V  +  LI  + + G  D A     EM       D+  Y V ID      KV
Sbjct: 195 QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKV 254

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           + A     E+   GLK     + S +  L     L    ++ +H+ K
Sbjct: 255 DMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK 301


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 133/280 (47%), Gaps = 16/280 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P      +L+D LCK G+V  A  + + +  K V+PN  TYN L              + 
Sbjct: 189 PNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKV 248

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E M+  G AP   +Y+  I+ +CK+R + EA  L   M  K      P   TY  ++  
Sbjct: 249 FEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELI---PNTVTYNTLMQG 305

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L     + E   L   M +SG LP++ TY  +L+G+C  G +EEA K L  M  +   PD
Sbjct: 306 LCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPD 365

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IV YN  ++ +      + A  L+ ++   G  PSV+TYN++I    + G  D A++ + 
Sbjct: 366 IVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFR 425

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +M+  G   D  +Y V+I G         A  L++E+V +
Sbjct: 426 KMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGR 465



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 16/286 (5%)

Query: 179 ALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            LN+L+++LC+   + +A ++  K  K  ++P++ T+  L             ++   EM
Sbjct: 123 TLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEM 182

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
                 P+  T+   +D  CK  MV+EA  +FE M  KG     P   TY  ++      
Sbjct: 183 AGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGV---EPNIYTYNALMNGYCLR 239

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             M +   +   M+  GC P V +Y  ++ G C + +++EA   L +M  K   P+ VTY
Sbjct: 240 LEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTY 299

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  ++ LC   +  EA  L+ +M   G  P+++TY++L+    + G  + A +    M +
Sbjct: 300 NTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQE 359

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           R    D+  Y ++I G+F   K+E A  L  ++   G++   R ++
Sbjct: 360 RKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYN 405



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 17/294 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------- 217
           ++  K+  QP+      L++ LC  G +  A E   +       PN  T+ IL       
Sbjct: 145 SKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKK 204

Query: 218 GMQT-----LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           GM +      E M + G  P+ +TYN  ++ +C    + +A+ +FE M  KG    +P+ 
Sbjct: 205 GMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGC---APSV 261

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y+I+I    ++ R++E  +LL  M     +P+  TY  +++G+C A  + EA +  ++
Sbjct: 262 HSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKK 321

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M + G  P++ TY+  L  LC + + +EAL+L   M E    P +  YN+LI   F  G+
Sbjct: 322 MCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGK 381

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            + A E + ++   G    V TY +MI GL      +EA  L  ++ + G  LP
Sbjct: 382 LEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGF-LP 434



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 3/252 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M   G A +++T N  I++ C+   +  A  +   M   G     P + T+  +I  L 
Sbjct: 111 QMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGI---QPDSVTFTTLINGLC 167

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              R++E   L   M     +P+  T+  +++ +C  G V EA    E M  KG  P+I 
Sbjct: 168 NEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIY 227

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +   C     ++A +++  M+  GC PSV +Y++LI+ Y +    D A     +M
Sbjct: 228 TYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQM 287

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            ++    +  TY  ++ GL   S + EA  L +++ + G+    R +   L  L   G L
Sbjct: 288 SEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHL 347

Query: 464 GAIHKLSDHMRK 475
               KL   M++
Sbjct: 348 EEALKLLTSMQE 359



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 7/237 (2%)

Query: 211 ANTYNILG----MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
           +N  N +G    M +   MI M   P        + +  K +  +    L   M   G  
Sbjct: 59  SNNSNDIGIDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGV- 117

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             +    T  I+I +L +   +    S+L  M   G  PD  T+  ++ G+C  G+++EA
Sbjct: 118 --AHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEA 175

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   EM  +   P+ VT+   + VLC      EA  ++  M E G  P++ TYN L++ 
Sbjct: 176 VELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNG 235

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y    E + A + +  M  +GCA  V +Y ++I+G     +++EA  LL ++  K L
Sbjct: 236 YCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKEL 292



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 18/226 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTL----------- 222
           P +++ ++L++  CK   +D A+ +  ++  K + PN  TYN L MQ L           
Sbjct: 259 PSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTL-MQGLCHASSLLEAQE 317

Query: 223 --EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++M   G  P+  TY+  +D  CK   + EA  L   M+ +      P    Y I+I 
Sbjct: 318 LFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKL---EPDIVLYNILIQ 374

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            +    ++E    L   +  +G  P V TY  +++G+   G  +EAYK   +M + G+ P
Sbjct: 375 GMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLP 434

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           D  +YN  ++    N++   A++L   M+         T+ ML+ +
Sbjct: 435 DSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLDL 480


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 17/336 (5%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP 209
           K F     L   L  + +  K+   P++     LL  LC    V  A  +  ++    +P
Sbjct: 124 KCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---CRP 180

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +  T+  L             +  L+ M++ G  PD  TY T +D  CK      A +L 
Sbjct: 181 DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL 240

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M         P    Y+ +I  L ++ R  +  +L   M + G  P++ TY  ++ G 
Sbjct: 241 RKMEEISHI--KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGF 298

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C++G+   A + L+EM  +   P++VTYN  +          EA  LY  M+  G  P+ 
Sbjct: 299 CISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 358

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TYN +I  + +    D A + ++ M  +GC+ DV T+  +IDG     ++++   LL E
Sbjct: 359 ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE 418

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +  +GL      +++ +    ++GDL A   LS  M
Sbjct: 419 MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 454



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 152/361 (42%), Gaps = 37/361 (10%)

Query: 116 LAYNLMIDILS-STKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYT 166
           + YN MI     S ++ A Q RL+  ML+     N V        FV         + Y 
Sbjct: 289 VTYNCMIGGFCISGRWSAAQ-RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYD 347

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +     P     N ++D  CK   +D AE +   +  K   P+  T+  L        
Sbjct: 348 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAK 407

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               GM+ L EM + G   +  TYNT I  FC    +  A DL + M + G     P   
Sbjct: 408 RIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC---PDIV 464

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLAGK 322
           T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   GK
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGK 524

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
             EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+N 
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNT 584

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ Y + G  D   E + EM +RG   D   Y  +I G      +  A  + +E+++ G
Sbjct: 585 LINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 644

Query: 443 L 443
           +
Sbjct: 645 V 645



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++     L+D  C    +D   E + +  +  +  N  TYN L             + 
Sbjct: 390 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 449

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
             ++MI  G  PD  T NT +D  C    + +A ++F+ M+     + +        P  
Sbjct: 450 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDV 509

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +    
Sbjct: 510 LTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVS 569

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+N  +   C     D+ L L+  M   G       Y  LI  + ++G 
Sbjct: 570 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ G +   ++E A  +LE++
Sbjct: 630 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 124/284 (43%), Gaps = 17/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN------------ILGMQ 220
           +P++     L++ LC+ G V  A  +  R V+N ++P+  TY             +  + 
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238

Query: 221 TLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            L +M ++ H  P+   Y+  ID  CK    +++ +LF  M+ KG     P   TY  MI
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF---PNIVTYNCMI 295

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                + R      LL  M+     P+V TY  ++      GK  EA +  +EM  +G  
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+ +TYN  +   C     D A  ++  M   GC P V T+  LI  Y      D   E 
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            HEM +RG   +  TY  +I G      +  A  L +++++ G+
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   L   M+ S  LP V  + +++  +    + +      ++M  K    DI ++  
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K  C       AL  +G++ ++G  P V T+  L+           A + +H++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           C  DV T+  +++GL    +V EA  LL+ +V  GL+     + +++  +  +GD
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGD 232



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 252 EAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
           +A DLF + +R++      P+   +  ++ A+V+ +R +   SL   M       D+ ++
Sbjct: 64  DAIDLFSDMLRSR----PLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSF 119

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++  C   K+  A     ++   G  PD+VT+   L  LC +    EAL L+ ++  
Sbjct: 120 TILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-- 177

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             C P V T+  L++     G    A      M + G   D  TY   +DG+
Sbjct: 178 --CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM 227


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 158/328 (48%), Gaps = 21/328 (6%)

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WA +QD +   P AYN M+D       +   F +    +D MK  N V V V+  L+
Sbjct: 80  FFNWASNQDGFRKSPEAYNEMVDFSG----QVMMFDVAWYFIDLMKARN-VDVTVETFLI 134

Query: 161 ILKQYTEKIKVKTQPE-INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
           ++++Y   ++     E I+A N + D  CK   + ++  I    + +    A  +     
Sbjct: 135 LMRRY---VRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEF----F 187

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            +L++  +    PD   Y   +  +C+A  ++EA  +F  M+  G     P   TY+I+I
Sbjct: 188 DSLKDKFE----PDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGI---KPNVYTYSIVI 240

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            +L +  ++     +   M+++GC P+  TY  ++     AG+ E+  +   +M   G  
Sbjct: 241 DSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCE 300

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD VTYN  ++  C ++N ++A+++ G M + GC P+  T+N L     +LG+ + A   
Sbjct: 301 PDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRM 360

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           + +M +  C  +  TY  ++  +F  SK
Sbjct: 361 YKKMKELNCEANTVTYNTLMK-MFVASK 387



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 103/245 (42%), Gaps = 27/245 (11%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN--------KVFVPVDVLLMILKQYTEK 168
            Y+++ID L       +   +   MLD   + N        ++ V       +L+ Y + 
Sbjct: 235 TYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQM 294

Query: 169 IKVKTQPEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYNIL---------- 217
            ++  +P+    N L++  CK   L D  + I    K    PNA+T+N L          
Sbjct: 295 KRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDV 354

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK-GSTISSPTAKT 274
               +  ++M ++    +  TYNT +  F    + +++ D+   ++T+       P   T
Sbjct: 355 NAAHRMYKKMKELNCEANTVTYNTLMKMF----VASKSTDMVLKLKTEMDENKIEPNVNT 410

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           Y ++I            +     MI+  CL P +  Y  VL+ +  AG++++  + +E+M
Sbjct: 411 YKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKM 470

Query: 334 GNKGY 338
            ++G+
Sbjct: 471 VDRGF 475


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 137/302 (45%), Gaps = 16/302 (5%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL-VDYAETICKRVKNKVK 208
           +V V   V+L+ L  Y   +     P      +L+D LCK G+ VD  +   + ++  + 
Sbjct: 187 QVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIV 246

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P+   Y +L              + L  M + G  PD  TY   +   CKA  V EA   
Sbjct: 247 PDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHR 306

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           FE ++  G T+       Y+ +I  L Q  R +E  S    M+     PD++ Y  ++  
Sbjct: 307 FELLQDGGFTLG---LIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRR 363

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
              AG+ ++A+  L+EM +KG+ PD   YN  LK L D  N D A  L   M++      
Sbjct: 364 FAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLD 423

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             T+N++I    + G  D A + + EM + GC   V TY  +IDGL+    +EEA  L  
Sbjct: 424 STTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFH 483

Query: 437 EV 438
           ++
Sbjct: 484 KM 485



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 15/250 (6%)

Query: 208 KPNANTYN------------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +P A  YN            +L +     M+  G  P++ TY   +D  CK  M  +A  
Sbjct: 176 RPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALK 235

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           +F+ M  +G     P  K Y +++ +L    R+E+   LL  M  +GC PD  TY   L 
Sbjct: 236 MFDEMLERGIV---PDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLS 292

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G+C AG+V+EA+   E + + G+   ++ Y+C +  L      DE L  Y  M+     P
Sbjct: 293 GLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISP 352

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            +  Y +LI  + E G    AF    EM  +G   D   Y  ++  LFD   ++ A  L+
Sbjct: 353 DITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLM 412

Query: 436 EEVVNKGLKL 445
            E++   + L
Sbjct: 413 SEMLQNNVVL 422



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 6/257 (2%)

Query: 220 QTLEEMIQMGH---APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           + +E   +MG     P  F YN          ++  A  L+  M + G     P + TY 
Sbjct: 162 EAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCL---PNSTTYI 218

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++  L +     +   +   M+  G +PDV  Y  +L  +C  G++E+A + L  M   
Sbjct: 219 VLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKEN 278

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G PPD VTY  FL  LC     DEA   +  + + G    +  Y+ LI   F+ G  D  
Sbjct: 279 GCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEG 338

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + EM  +  + D+  Y ++I    +  + ++A  LL+E+ +KG       +++ L  
Sbjct: 339 LSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKA 398

Query: 457 LSVIGDLGAIHKLSDHM 473
           L  +G++     L   M
Sbjct: 399 LFDVGNIDRAQSLMSEM 415



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 125/297 (42%), Gaps = 31/297 (10%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L  YTE +     P+I    +L+    + G    A  +   +K+K   P+   YN L   
Sbjct: 339 LSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKA 398

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        + EM+Q     D+ T+N  I   CK  ++ +A  +F+ M   G    
Sbjct: 399 LFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGC--- 455

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP--------------DVSTYKEVL 314
            PT  TY  +I  L +   +EE   +L H +  G  P              D  + ++++
Sbjct: 456 HPTVMTYNALIDGLYRAGMLEEA-RMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLV 514

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
           +GMC +G+V +AYK L  +   G  PD+VTYN  +  LC  KN D ALRL+  +   G  
Sbjct: 515 DGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGIS 574

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           P   TY  LI   +     + A   +  + + G    +  Y  M+  L    K+ +A
Sbjct: 575 PDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQA 631



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 1/184 (0%)

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            + + + +P+A  +  +++A     R +E       M +  C P    Y  V + +   G
Sbjct: 135 ARAAGLPAPSA-AFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRG 193

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            +  A      M + G  P+  TY   +  LC      +AL+++  M+E G  P V+ Y 
Sbjct: 194 VILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYT 253

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+S     G  + A      M + GC  D  TY V + GL    +V+EA    E + + 
Sbjct: 254 VLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDG 313

Query: 442 GLKL 445
           G  L
Sbjct: 314 GFTL 317


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 50/357 (14%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
            N++L  LC  G    A  + +++    +PNA TYN +             +  + EM +
Sbjct: 117 FNIMLRHLCSAGKPARALELLRQMP---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRE 173

Query: 228 MGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP---------------- 270
            G  AP+ +TY T I  +CK   V EA  +F+ M TKG                      
Sbjct: 174 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 233

Query: 271 -----------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
                            T  TY +++ AL  + R  E + L+  M   G  PDV TY  +
Sbjct: 234 DTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 293

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C  G V++A +  E M  +G    +VTY   +  L       E  +L+   +  G 
Sbjct: 294 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 353

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P +  YN LI+ +   G  D AFE   EM+K+  A D  TY  ++ GL    +V+EA  
Sbjct: 354 RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARK 413

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVIARRLALNQ 489
           L++E+  +G++     +++ +   S+ GD+  A+   ++ M K +NP +    AL Q
Sbjct: 414 LIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 470



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL----------- 217
           K + +PE    N L+   C  G +D A     R V+  V     TYN+L           
Sbjct: 210 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGT 269

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              + +EEM   G APD FTYN  I+  CK   V +A ++FE M  +G      T  TY 
Sbjct: 270 EAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV---RATVVTYT 326

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I AL +  +++E   L    +  G  PD+  Y  ++     +G ++ A++ + EM  K
Sbjct: 327 ALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 386

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              PD VTYN  ++ LC     DEA +L   M E G  P + TYN LIS Y   G+   A
Sbjct: 387 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDA 446

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               +EM  +G    + TY  +I GL    + ++A  +++E+V  G+
Sbjct: 447 LRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 493



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            +T+  +L  +C AGK   A + L +M      P+ VTYN  +   C       AL +  
Sbjct: 114 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 169

Query: 367 RMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFD 424
            M E  G  P+  TY  +IS + ++G  D A + + EM  +G    +   Y  +I G  D
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             K++ A    + +V +G+ +    ++  +  L + G     ++L + M
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 278


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 17/336 (5%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP 209
           K F     L   L  + +  K+   P++     LL  LC    V  A  +  ++    +P
Sbjct: 124 KCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---CRP 180

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +  T+  L             +  L+ M++ G  PD  TY T +D  CK      A +L 
Sbjct: 181 DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLL 240

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M         P    Y+ +I  L ++ R  +  +L   M + G  P++ TY  ++ G 
Sbjct: 241 RKMEEISHI--KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGF 298

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C++G+   A + L+EM  +   P++VTYN  +          EA  LY  M+  G  P+ 
Sbjct: 299 CISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 358

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TYN +I  + +    D A + ++ M  +GC+ DV T+  +IDG     ++++   LL E
Sbjct: 359 ITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE 418

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +  +GL      +++ +    ++GDL A   LS  M
Sbjct: 419 MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 454



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 152/361 (42%), Gaps = 37/361 (10%)

Query: 116 LAYNLMIDILS-STKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYT 166
           + YN MI     S ++ A Q RL+  ML+     N V        FV         + Y 
Sbjct: 289 VTYNCMIGGFCISGRWSAAQ-RLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYD 347

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +     P     N ++D  CK   +D AE +   +  K   P+  T+  L        
Sbjct: 348 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAK 407

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               GM+ L EM + G   +  TYNT I  FC    +  A DL + M + G     P   
Sbjct: 408 RIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC---PDIV 464

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLAGK 322
           T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   GK
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGK 524

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
             EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+N 
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNT 584

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ Y + G  D   E + EM +RG   D   Y  +I G      +  A  + +E+++ G
Sbjct: 585 LINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 644

Query: 443 L 443
           +
Sbjct: 645 V 645



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P++     L+D  C    +D   E + +  +  +  N  TYN L             + 
Sbjct: 390 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 449

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
             ++MI  G  PD  T NT +D  C    + +A ++F+ M+     + +        P  
Sbjct: 450 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDV 509

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +    
Sbjct: 510 LTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVS 569

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+N  +   C     D+ L L+  M   G       Y  LI  + ++G 
Sbjct: 570 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ G +   ++E A  +LE++
Sbjct: 630 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 124/284 (43%), Gaps = 17/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN------------ILGMQ 220
           +P++     L++ LC+ G V  A  +  R V+N ++P+  TY             +  + 
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238

Query: 221 TLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            L +M ++ H  P+   Y+  ID  CK    +++ +LF  M+ KG     P   TY  MI
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF---PNIVTYNCMI 295

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                + R      LL  M+     P+V TY  ++      GK  EA +  +EM  +G  
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+ +TYN  +   C     D A  ++  M   GC P V T+  LI  Y      D   E 
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            HEM +RG   +  TY  +I G      +  A  L +++++ G+
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+   L   M+ S  LP V  + +++  +    + +      ++M  K    DI ++  
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K  C       AL  +G++ ++G  P V T+  L+           A + +H++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           C  DV T+  +++GL    +V EA  LL+ +V  GL+     + +++  +  +GD
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGD 232



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 252 EAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
           +A DLF + +R++      P+   +  ++ A+V+ +R +   SL   M       D+ ++
Sbjct: 64  DAIDLFSDMLRSR----PLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSF 119

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++  C   K+  A     ++   G  PD+VT+   L  LC +    EAL L+ ++  
Sbjct: 120 TILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-- 177

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             C P V T+  L++     G    A      M + G   D  TY   +DG+
Sbjct: 178 --CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM 227


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 124/274 (45%), Gaps = 15/274 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N+ +  LC+ G +  A  +   ++    P+  TYN L             M  L  M+  
Sbjct: 228 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 287

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  PD+FTYNT ID +CK  MV EA +L +    KG     P   TY  +I  L     +
Sbjct: 288 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV---PDQVTYCSLINGLCAEGDV 344

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L       G  PD+  Y  +++G+CL G +  A + + EM  +G  PDI TYN  
Sbjct: 345 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 404

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC   N  +A  +    I  G  P V T+N LI  Y +  + D A +    M + G 
Sbjct: 405 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 464

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           A D  TY  +++GL    KV E     +E++ KG
Sbjct: 465 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKG 498



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 16/311 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           L+ + E      +P+I   N L+  LC  GL+ +A + + +  +    P+  TYNI+   
Sbjct: 348 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 407

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        + + I  G+ PD FT+NT ID +CK   +  A  L E M   G    
Sbjct: 408 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI--- 464

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   TY  ++  L +  ++ E       MI  GC P+  TY  ++E  C + K+EEA K
Sbjct: 465 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 524

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            + +M  +G  PD V++N  +   C N + + A  L+ ++ E G   +  T+N LI  + 
Sbjct: 525 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFS 584

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                  A + + EM  +G   D  TY V+IDG    + V+ A   L E++ KG      
Sbjct: 585 GKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 644

Query: 449 KFDSYLMQLSV 459
            F   +  L+V
Sbjct: 645 TFGRVINSLTV 655



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 16/300 (5%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYN 215
           ++L  L+   E  +    P+I   N++++ LCK G +  A  +    +     P+  T+N
Sbjct: 378 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFN 437

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +Q +E M + G APD  TYN+ ++  CKA  V E  + F+ M  K
Sbjct: 438 TLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK 497

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY I+I    ++++MEE   ++  M   G  PD  ++  ++ G C  G +
Sbjct: 498 GC---HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 554

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E AY   +++  KGY     T+N  +       N   A +++  M+  G      TY +L
Sbjct: 555 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 614

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I    +    D A+    EM K+G    + T+  +I+ L    +V +A  ++  +V  G+
Sbjct: 615 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGV 674



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 21/292 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LC  G V+ A  +    + K +KP+   YN L             +Q + EM + G
Sbjct: 334 LINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG 393

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TYN  I+  CK   +++A  +      KG     P   T+  +I    +  +++
Sbjct: 394 CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL---PDVFTFNTLIDGYCKRLKLD 450

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               L+  M   G  PD  TY  VL G+C AGKV E  +  +EM  KG  P+ +TYN  +
Sbjct: 451 SALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILI 510

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           +  C +   +EA ++  +M + G  P   ++N LI  +   G+ +GA+  + +++++G +
Sbjct: 511 ENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 570

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              DT+  +I        +  A  + +E+++KG      + DSY  ++ + G
Sbjct: 571 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG-----HRADSYTYRVLIDG 617



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P+    N ++D  CK  +V  A  + K  V     P+  TY  L             ++ 
Sbjct: 291 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL 350

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             E    G  PD   YN+ +   C   ++  A  +   M  +G     P  +TY I+I  
Sbjct: 351 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGC---HPDIQTYNIVING 407

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   + +   ++   I  G LPDV T+  +++G C   K++ A + +E M   G  PD
Sbjct: 408 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 467

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +TYN  L  LC     +E    +  MI  GC P+  TYN+LI  +    + + A +   
Sbjct: 468 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 527

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M + G   D  ++  +I G      +E A  L +++  KG       F++ +   S   
Sbjct: 528 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKL 587

Query: 462 DLGAIHKLSDHM 473
           ++    K+ D M
Sbjct: 588 NMHMAEKIFDEM 599



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 148/366 (40%), Gaps = 67/366 (18%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT--- 173
           AYN ++D L    Y  +  ++   ML          V  D+       +T  I++++   
Sbjct: 90  AYNAIMDALVDAAYHDQAHKVYVRML-------AAGVSPDL-------HTHTIRLRSFCL 135

Query: 174 --QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
             +P I AL LL  AL   G V Y   +C      +  + +T++    Q  ++M+     
Sbjct: 136 TARPHI-ALRLL-RALPHRGAVAYCTVVCG-----LYAHGHTHD--ARQLFDQMLHTHVF 186

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+   +N  +   CK   V EA  L   +  +G +I+     TY I I  L +  R+ E 
Sbjct: 187 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSIN---LFTYNIWIRGLCEAGRLPEA 243

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN---------------- 335
             L+  M  +  +PDV TY  ++ G+C     +EA  +L  M N                
Sbjct: 244 VRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 302

Query: 336 -------------------KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
                              KG+ PD VTY   +  LC   + + AL L+      G  P 
Sbjct: 303 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 362

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +  YN L+      G    A +  +EM + GC  D+ TY ++I+GL     + +A  ++ 
Sbjct: 363 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 422

Query: 437 EVVNKG 442
           + + KG
Sbjct: 423 DAIMKG 428



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N +L+ LCK G V+   ET  + +     PN  TYNIL              + 
Sbjct: 466 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 525

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + +M Q G  PD  ++NT I  FC+   +  A  LF+ +  KG    S TA T+  +I A
Sbjct: 526 IVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGY---SATADTFNTLIGA 582

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                 M     +   M++ G   D  TY+ +++G C    V+ AY  L EM  KG+ P 
Sbjct: 583 FSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 642

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           + T+   +  L  N    +A+ +   M+++G  P V
Sbjct: 643 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 678



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 103/292 (35%), Gaps = 68/292 (23%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y  +I  + +A  + +A D FE M         P A  Y  ++ ALV     ++   +  
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFAC---PPAAPAYNAIMDALVDAAYHDQAHKVYV 112

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP----------------- 339
            M+ +G  PD+ T+   L   CL  +   A + L  + ++G                   
Sbjct: 113 RMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHD 172

Query: 340 --------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG---------CW-- 374
                         P++  +N  L  LC   +  EA  L G++I+ G          W  
Sbjct: 173 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIR 232

Query: 375 -----------------------PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                                  P V TYN LI    +   P  A      M  +GC  D
Sbjct: 233 GLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPD 292

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             TY  +IDG    S V+EA  LL++ V KG       + S +  L   GD+
Sbjct: 293 DFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 344



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 4/205 (1%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y   I A  +  R+ +       M    C P    Y  +++ +  A   ++A+K    M 
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 115

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  PD+ T+   L+  C       ALRL   +   G       Y  ++   +  G   
Sbjct: 116 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAV----AYCTVVCGLYAHGHTH 171

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A + + +M       ++  +  ++  L     V EA  LL +V+ +G+ +    ++ ++
Sbjct: 172 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 231

Query: 455 MQLSVIGDLGAIHKLSDHMRKFYNP 479
             L   G L    +L D MR +  P
Sbjct: 232 RGLCEAGRLPEAVRLVDGMRAYAVP 256


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 136/291 (46%), Gaps = 21/291 (7%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           ++   +P+    N+ +D LCK   VD A  + K++ + K  P   TY  L          
Sbjct: 68  VRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRL 127

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              M  LE+M++ G++P   TY   ID   KA  V EA  +F  M   G     P A  Y
Sbjct: 128 DEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNG---CRPDAFVY 184

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCL----PDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +I  L +  +++E    L  M+ +GC     PDV  +  V+  +C +G +E+A  + +
Sbjct: 185 TALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFD 244

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+ +        T+N  +  LC  +  +EA+    +M E  C+P++ TY  L+  + +LG
Sbjct: 245 EL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLG 303

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             D A     E  +RG   D  TY  +IDGL    +VEE C    E+ N+G
Sbjct: 304 RLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG 354



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 20/328 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L Q  E ++    P+      ++D LCK G V+        ++N+  +P+A TY  L   
Sbjct: 309 LLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDG 368

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +   +M+Q G      TYN  +D  CKA  V EA   F  M  +G    
Sbjct: 369 FMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV-- 426

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
             T  TY+ ++        +     L   M++ GC P++ +Y  ++ G+C AGK+ +AY 
Sbjct: 427 -ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYF 485

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKN--GDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           + E++  +   PD+ T+N FL  LC   +  GD  + L+  M+  G  P++ +Y++L+  
Sbjct: 486 YFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGD-GVELFESMVSQGTSPNLHSYSILMDG 544

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
               G  +   E +HEM  RG A DV  +  +I  L    +V+EA  +  E+  +     
Sbjct: 545 ICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDA 604

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           +  + S L  LS    +     LS HM+
Sbjct: 605 W-SYWSLLDALSRCERMEEARLLSFHMK 631



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 167/404 (41%), Gaps = 80/404 (19%)

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV---------------CSMLDYMKRNN 149
           AG + +Y    + YN+ ID L   +     F+L+                +++D + +  
Sbjct: 70  AGCEPDY----VTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAG 125

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVK 208
           ++    D  + IL+Q  EK      P +    +++D L K G V+ A  I    + N  +
Sbjct: 126 RL----DEAMAILEQMVEK---GNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCR 178

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHA----PD------------------- 233
           P+A  Y  L             +  L +M++ G A    PD                   
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLED 238

Query: 234 ---------------NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                          +FT+N  +   CKA    EA     F++        PT  TY  +
Sbjct: 239 ALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEA---IAFVKKMSERRCFPTLFTYTSL 295

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +   ++  R++E    L   +  G +PD  TY  +++G+C  G+VEE  +   EM N+GY
Sbjct: 296 VDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY 355

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD VTY   +      K   +A R+Y +M++ G   S  TYN+++    + G    A+ 
Sbjct: 356 EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYA 415

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           T+  M++RGC   V TY  ++DG      V  A  L   ++++G
Sbjct: 416 TFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG 459



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 92/174 (52%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP    + ++I  L +  R++E FS+L   + +GC PD  TY   ++G+C A +V++A++
Sbjct: 38  SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 97

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L++M  K   P  VTY   +  L      DEA+ +  +M+E G  P+++TY ++I    
Sbjct: 98  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLS 157

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + G  + A   + +M   GC  D   Y  +I GL    K++EA   L ++V  G
Sbjct: 158 KAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENG 211



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 126/279 (45%), Gaps = 33/279 (11%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           LL+ LCK G +D A                      M  L+EM     +PD   +   I+
Sbjct: 15  LLNGLCKTGQLDRA----------------------MLLLDEM---PCSPDMVAFTVVIN 49

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             C+ + + EA  + E     G     P   TY + I  L + +R+++ F LL  M    
Sbjct: 50  GLCREKRLDEAFSVLERAVRAGC---EPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKK 106

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           CLP   TY  +++G+  AG+++EA   LE+M  KG  P + TY   +  L      +EA 
Sbjct: 107 CLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEAR 166

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ----DVDTYCVM 418
           R++  M+  GC P    Y  LIS   ++G+ D A    ++M + GCA+    DV  + ++
Sbjct: 167 RIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLV 226

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           I  L     +E+A    +E ++  L L +  F+  +  L
Sbjct: 227 IRQLCASGNLEDALAYFDE-LDDSLDLTHFTFNPLVAAL 264



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 3/186 (1%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L +  +++    LL  M    C PD+  +  V+ G+C   +++EA+  LE     G
Sbjct: 15  LLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAG 71

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD VTYN F+  LC  +  D+A +L  +M E  C P+  TY  L+    + G  D A 
Sbjct: 72  CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAM 131

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               +M ++G +  + TY V+IDGL    +VEEA  +  +++  G +     + + +  L
Sbjct: 132 AILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191

Query: 458 SVIGDL 463
           + IG L
Sbjct: 192 AKIGKL 197



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           L D      +L G+C  G+++ A   L+EM      PD+V +   +  LC  K  DEA  
Sbjct: 6   LVDTRVCTALLNGLCKTGQLDRAMLLLDEMPCS---PDMVAFTVVINGLCREKRLDEAFS 62

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +  R +  GC P   TYN+ I    +    D AF+   +MD++ C     TY  ++DGL 
Sbjct: 63  VLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLL 122

Query: 424 DCSKVEEACFLLEEVVNKG 442
              +++EA  +LE++V KG
Sbjct: 123 KAGRLDEAMAILEQMVEKG 141



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 110/261 (42%), Gaps = 18/261 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---- 217
           + Y + ++  T       N++LD LCK G V  A  T     +        TY+ L    
Sbjct: 380 RVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGF 439

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++    M+  G  P+  +YN  I   C+A  + +A   FE +  +      
Sbjct: 440 CSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL---C 496

Query: 270 PTAKTYAIMIVALVQN-DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           P   T+   +  L Q  D + +   L   M++ G  P++ +Y  +++G+C AG +E   +
Sbjct: 497 PDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLE 556

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              EM ++G  PD+V +N  ++ LC     DEAL ++ R +E    P   +Y  L+    
Sbjct: 557 IFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVF-RELERRSAPDAWSYWSLLDALS 615

Query: 389 ELGEPDGAFETWHEMDKRGCA 409
                + A      M  +GCA
Sbjct: 616 RCERMEEARLLSFHMKLQGCA 636



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 19/156 (12%)

Query: 165 YTEKI-KVKTQPEINALNLLLDALCKC--GLVDYAETICKRVKNKVKPNANTYNIL---- 217
           Y EK+ + +  P++   N  L  LC+    + D  E     V     PN ++Y+IL    
Sbjct: 486 YFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGI 545

Query: 218 ----GMQ-TLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
               G++ TLE   EM+  G APD   +NT I   C A  V EA ++F  +  +    S+
Sbjct: 546 CRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR----SA 601

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           P A +Y  ++ AL + +RMEE   L  HM   GC P
Sbjct: 602 PDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAP 637


>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E  + +  P +  LN+++ A CK G ++ A  + K+++     P   +YN L      
Sbjct: 169 YREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCN 228

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+    M + G  PD+ T+NT I+ FC+   + EA  +F  M+        P 
Sbjct: 229 KGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVV---PN 285

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I    Q    E    L   M+ +G   D+ TY  ++ G+C+ G+ ++A   ++
Sbjct: 286 TITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVK 345

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+  +   P+  T++  +   C  KN + A +LY  MI  GC P+  T+ MLIS + +  
Sbjct: 346 ELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNE 405

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + DGA E   EM +R  A D DT   +  GL+   K E A  L +E+  K L
Sbjct: 406 DFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKHL 457



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 3/225 (1%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           +++   T+ + + +  A D+F  M+  G     P  ++    I A +   R +   +   
Sbjct: 114 FDSLFKTYAQMKKLRNAIDVFCQMKDYGFL---PRVESCNAYISASISLQRGDIALTFYR 170

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M      P+V T   V+   C  GK+E+A +  ++M   G+ P I +YN  +   C+  
Sbjct: 171 EMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKG 230

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +  ++L   M + G  P   T+N LI+ +   G+   A + + EM       +  TY 
Sbjct: 231 LLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYN 290

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            +I+G       E    L +E++  G+K     +++ ++ L + G
Sbjct: 291 TLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEG 335



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 87/230 (37%), Gaps = 53/230 (23%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL- 217
           M LK   EK  V+  P+    N L++  C+ G +  A  I   +K N V PN  TYN L 
Sbjct: 236 MKLKILMEKNGVR--PDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLI 293

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      G +  +EM++ G   D  TYN  I   C      +AA L + +  +   
Sbjct: 294 NGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLV 353

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK--------------- 311
              P + T++ +I         E  F L   MI SGC P+  T+K               
Sbjct: 354 ---PNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGA 410

Query: 312 --------------------EVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                               E+  G+ L+GK E A K  +EM  K   P+
Sbjct: 411 VEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKHLMPE 460


>gi|226492862|ref|NP_001141929.1| uncharacterized protein LOC100274078 [Zea mays]
 gi|194706478|gb|ACF87323.1| unknown [Zea mays]
 gi|414585156|tpg|DAA35727.1| TPA: hypothetical protein ZEAMMB73_571639 [Zea mays]
          Length = 442

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 141/284 (49%), Gaps = 19/284 (6%)

Query: 179 ALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL--GM----------QTLEEM 225
           + ++L+DALC    VD A+ +C  +      P   T+N+L  G           Q   +M
Sbjct: 144 SFHILVDALCDHRRVDEADHLCFGKDPPPFPPGTKTHNLLLRGWAKAHAWARLRQLWFDM 203

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            + G A D  +Y+  +D   K+    +A  +F+ M+ +G  I +  A   AI  V + Q 
Sbjct: 204 DRRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQRGIRIDT-VAYNTAIHAVGMAQG 262

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             ++    L   M+++GC P+++TY  +++  C  G+ +E Y F+++M   G  PD++TY
Sbjct: 263 --VDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEGYAFVQQMRKTGCKPDVLTY 320

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           +CF + L   +   E L L+ +M+E GC P + TY MLI  +   G     F  W  M++
Sbjct: 321 HCFFQYLSRPQ---EVLGLFEKMLERGCQPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEE 377

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G + D   Y  +ID L     V+ A    E+++ KGL    RK
Sbjct: 378 QGLSPDAFAYNALIDALLQKGMVDLARKYDEKMLAKGLSPKPRK 421



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 9/232 (3%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  +++  +D  C  R V EA  L      K      P  KT+ +++    +        
Sbjct: 141 DEVSFHILVDALCDHRRVDEADHL---CFGKDPPPFPPGTKTHNLLLRGWAKAHAWARLR 197

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            L   M   G   D+ +Y   ++ +  +GK  +A+K  +EM  +G   D V YN  +  +
Sbjct: 198 QLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQRGIRIDTVAYNTAIHAV 257

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
              +  D A+RLY +M++ GC P++ TYN +I ++ + G     +    +M K GC  DV
Sbjct: 258 GMAQGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEGYAFVQQMRKTGCKPDV 317

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            TY      L   S+ +E   L E+++ +G +    + D+Y+M +   G  G
Sbjct: 318 LTYHCFFQYL---SRPQEVLGLFEKMLERGCQ---PRMDTYVMLIKRFGRWG 363


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 156/360 (43%), Gaps = 81/360 (22%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GM 219
           T+P++   + ++D LCK  LVD A  +   +  + + P+  TY  L              
Sbjct: 146 TRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAF 205

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------------- 264
             L EMI     P+ +TYNT IDT CK   V E+ +L   M  KG               
Sbjct: 206 GLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGY 265

Query: 265 -----------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
                             T  +P   +Y I+I  L +  R++E  +LL  M++   +PD 
Sbjct: 266 CLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDT 325

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            TY  +++G+C  G++       +EM ++G P ++VTYN  L  LC N+N D+A+ L+ +
Sbjct: 326 VTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMK 385

Query: 368 MIEVGCWPS-----------------------------------VQTYNMLISMYFELGE 392
           M E G  P+                                   V TY ++IS   + G 
Sbjct: 386 MKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGM 445

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A     +M+  GC  +  T+ ++I  L +  + ++A  LL E++ KGL LP+R F S
Sbjct: 446 FDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGL-LPFRNFHS 504



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 155/341 (45%), Gaps = 23/341 (6%)

Query: 159 LMILKQYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPN 210
           L+ +K Y   I +  Q       P++  L++L++  C  G + ++ ++  ++ K   +PN
Sbjct: 20  LVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPN 79

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
               N L             +   ++++  G   D  +Y   ++  CK   + E     +
Sbjct: 80  TIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK---IGETRCAIK 136

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            +RT     + P    Y+ +I  L ++  ++E + L   M   G  PDV TY  ++ G C
Sbjct: 137 LLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFC 196

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
           LAG++ EA+  L EM  K   P+I TYN  +  LC      E+  L   M + G  P V 
Sbjct: 197 LAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVV 256

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            Y++L+  Y  +GE   A + +  M + G   DV +Y ++I+GL    +V+EA  LL E+
Sbjct: 257 IYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREM 316

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           ++K +      + S +  L  +G +  I  L+  M     P
Sbjct: 317 LHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQP 357



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL----------- 217
           K   +P++   ++L+D  C  G V  A+ I    V+  V P+  +YNI+           
Sbjct: 248 KKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVD 307

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             M  L EM+     PD  TY++ ID  CK   +T   DL + M  +G         TY 
Sbjct: 308 EAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQ---PANLVTYN 364

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L +N  +++  +L   M   G  P+  TY  +++G+C  G++++     + +  K
Sbjct: 365 SLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVK 424

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           GY  D+ TY   +  LC     DEAL +  +M + GC P+  T+ ++I    E  E D A
Sbjct: 425 GYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKA 484

Query: 397 FETWHEMDKRG 407
            +  HEM  +G
Sbjct: 485 EKLLHEMIAKG 495



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 1/213 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    +  ++ +LV+        SL   M   G +PD+ T   ++   C  G++  ++  
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L ++   GY P+ +  N  +K LC      ++L  + +++  G      +Y +L++   +
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +GE   A +    ++ R    DV  Y  +IDGL     V+EA  L  E+  +G+      
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 450 FDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVI 481
           + + +    + G L  A   L++ + K  NP I
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNINPNI 220


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 50/357 (14%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
            N++L  LC  G    A  + +++    +PNA TYN +             +  + EM +
Sbjct: 44  FNIMLRHLCSAGKPARALELLRQMP---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRE 100

Query: 228 MGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP---------------- 270
            G  AP+ +TY T I  +CK   V EA  +F+ M TKG                      
Sbjct: 101 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 160

Query: 271 -----------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
                            T  TY +++ AL  + R  E + L+  M   G  PDV TY  +
Sbjct: 161 DTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 220

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C  G V++A +  E M  +G    +VTY   +  L       E  +L+   +  G 
Sbjct: 221 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGI 280

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P +  YN LI+ +   G  D AFE   EM+K+  A D  TY  ++ GL    +V+EA  
Sbjct: 281 RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARK 340

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVIARRLALNQ 489
           L++E+  +G++     +++ +   S+ GD+  A+   ++ M K +NP +    AL Q
Sbjct: 341 LIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 397



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL----------- 217
           K + +PE    N L+   C  G +D A     R V+  V     TYN+L           
Sbjct: 137 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGT 196

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              + +EEM   G APD FTYN  I+  CK   V +A ++FE M  +G      T  TY 
Sbjct: 197 EAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV---RATVVTYT 253

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I AL +  +++E   L    +  G  PD+  Y  ++     +G ++ A++ + EM  K
Sbjct: 254 SLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 313

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              PD VTYN  ++ LC     DEA +L   M + G  P + TYN LIS Y   G+   A
Sbjct: 314 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDA 373

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               +EM  +G    + TY  +I GL    + ++A  +++E+V  G+
Sbjct: 374 LRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 420



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            +T+  +L  +C AGK   A + L +M      P+ VTYN  +   C       AL +  
Sbjct: 41  TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 96

Query: 367 RMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFD 424
            M E  G  P+  TY  +IS + ++G  D A + + EM  +G    +   Y  +I G  D
Sbjct: 97  EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             K++ A    + +V +G+ +    ++  +  L + G     ++L + M
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 205


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 132/269 (49%), Gaps = 20/269 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN--ILGM----------QTLEEMIQ 227
           N L+D LCK G +  AE + +R+K +   P+   Y+  + G+          Q LE+M  
Sbjct: 191 NTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRD 250

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             H P+  TYNT +D  CK+  +  A ++ E M +  S         Y+ ++  L +  R
Sbjct: 251 SDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS--SDGCGLNVVGYSTVVDGLCKLGR 308

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E  S++  M  +GC PDV TY  ++ G+C AGK+EEA + + EM  +G  P+ VTY  
Sbjct: 309 TQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVG-----CWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            +  LC      EA R+   M   G     C PSV TYN LI    + G  D A + +  
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           M  +GC  D  +Y  +++GL    +  +A
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 19/317 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTL-------- 222
           ++ P++   + LL   CK G V+ +  + K V ++ ++P+A  Y  + M +L        
Sbjct: 77  RSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKV-MASLCKSARLGE 135

Query: 223 -----EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
                EEMI+ G  P   T+NT I   C+ + +  A  L + M   G         TY  
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKAD---VVTYNT 192

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L +  R++E   LL  M  SGC PDV  Y   + G+C +GKV  A++ LE+M +  
Sbjct: 193 LMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSD 252

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGA 396
           + P++VTYN  L  LC +   D AL +  +M    GC  +V  Y+ ++    +LG    A
Sbjct: 253 HDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEA 312

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
                 M + GC  DV TY  +++GL    K+EEA   + E+  +G K     + S +  
Sbjct: 313 RSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHG 372

Query: 457 LSVIGDLGAIHKLSDHM 473
           L   G L    ++ + M
Sbjct: 373 LCSCGRLAEAERMVEEM 389



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 5/252 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M + G  P++ T+N  ++ F K     +   L E M  +G     P   +Y  ++  L +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGI---QPNVVSYNGLLEGLCK 57

Query: 285 NDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +R  E   L+  MI+ G    PD+ TY  +L G C AGKVEE+ + L+E+ ++G  PD 
Sbjct: 58  LERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDA 117

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           + Y   +  LC +    EAL L   MI  GC P++ T+N LIS        + A      
Sbjct: 118 LMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQT 177

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M   G   DV TY  ++DGL    +++EA  LLE +   G       + S++  L   G 
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237

Query: 463 LGAIHKLSDHMR 474
           +   H++ + MR
Sbjct: 238 VLNAHQVLEQMR 249



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 18/281 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTLE-------- 223
           P     N L++   K G     E + + +  + ++PN  +YN L  G+  LE        
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 224 --EMIQMG--HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             +MI  G    PD  TY+T +  +CKA  V E+ +L + + ++G     P A  Y  ++
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGL---RPDALMYTKVM 124

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            +L ++ R+ E   LL  MI +GC P + T+  ++ G C    +E A   L+ M   G  
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVK 184

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            D+VTYN  +  LC      EA +L  RM   GC P V  Y+  +    + G+   A + 
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQV 244

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             +M       +V TY  ++DGL    K++ A  ++E++ +
Sbjct: 245 LEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 140/297 (47%), Gaps = 18/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M+ K Y + ++V   P I+  N+L+ A CK G V+ AE +   ++++ + P+  TYN L 
Sbjct: 180 MVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 239

Query: 218 ------GMQ-----TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                 GM        + M + G +PD  TYN+ I  FC+   + EA  LF      G+T
Sbjct: 240 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFR--EINGAT 297

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY  +I    + + +EE   L   M   G  P V TY  +L  +C  GK+++A
Sbjct: 298 ---PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDA 354

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            + L EM  +   PD VT N  +   C   +   A+++  +M+E G  P   T+  LI  
Sbjct: 355 NRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHG 414

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +L E D A E   EM   G +    TY  ++D  +D    E    L +E+  KGL
Sbjct: 415 FCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGL 471



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI--------------VALVQ 284
           T I T  K +    A +L E +  +   +SSP+     + I              V    
Sbjct: 80  TMIHTLAKHKQFKTAQNLLERIAVR-DYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYA 138

Query: 285 NDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           N RM ++   +  HM   G  P +     +L  +  A      +K  ++M   G  P+I 
Sbjct: 139 NSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIH 198

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            +N  +   C + + ++A +L   M     +P + TYN LIS+Y + G    A      M
Sbjct: 199 IFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRM 258

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           ++ G + D+ TY  +I G     ++ EA  L  E+
Sbjct: 259 ERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI 293


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           E  K K  P +   +++++ LC+CG +     I +  V N +KPNA  Y  L        
Sbjct: 406 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 465

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTA 272
                   LE M + G  PD F YN+ I  FCKA+ + EA   L E +  +      P A
Sbjct: 466 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR----LRPNA 521

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY   I    +   ME        M++ G LP+V  Y  ++EG C  G V EA+     
Sbjct: 522 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRF 581

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           + ++    D+ TY+  +  L  N    EA  ++  + E G  P+  TYN LIS   + G 
Sbjct: 582 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 641

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D A +   EM  +G   D+ TY ++IDGL    ++E A  L +++  +GL
Sbjct: 642 VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 692



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 142/297 (47%), Gaps = 19/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNI-- 216
           MIL++  E+      P++   N L+   CK   ++ A T + + ++ +++PNA+TY    
Sbjct: 472 MILERMREQ---GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 528

Query: 217 ----------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                     +  +   EM+  G  P+   Y   I+  CK   VTEA  +F F+ ++   
Sbjct: 529 DGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVL 588

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
                 +TY+++I  L +N +M E F +   +   G LP+  TY  ++ G C  G V++A
Sbjct: 589 ---QDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 645

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            + LEEM  KG  PDIVTYN  +  LC     + A  L+  +   G  P+  TY  ++  
Sbjct: 646 SQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDG 705

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y +   P  AF+   EM  RG   D   Y V+++      K E+A  L +E++ KG 
Sbjct: 706 YCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF 762



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 133/317 (41%), Gaps = 50/317 (15%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTL 222
           ++   ++L+  L + G +  A  I   ++ K + PNA TYN L              Q L
Sbjct: 590 DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLL 649

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EEM   G  PD  TYN  ID  CKA  +  A +LF+ +  +G T   P   TYA M+   
Sbjct: 650 EEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT---PNCVTYAAMVDGY 706

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVL---------------------------- 314
            ++      F LL  M+  G  PD   Y  +L                            
Sbjct: 707 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 766

Query: 315 ------EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
                 EG C +GK++EA   LEEM  K + P+ VTY   +   C      EA RL+  M
Sbjct: 767 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 826

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            E    P+ +TY  L+  Y  +G        + EM  +G   D  TY VMID       V
Sbjct: 827 QERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 886

Query: 429 EEACFLLEEVVNKGLKL 445
            EAC L +E++ KG+ +
Sbjct: 887 MEACKLKDEILVKGMPM 903



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 128/279 (45%), Gaps = 17/279 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N LL+ +CK G ++ A  I + +  K V+P++ TY++L              + L+EM +
Sbjct: 350 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 409

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
              AP   TY+  I+  C+   +     +   M   G     P A  Y  ++ A  +  R
Sbjct: 410 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGL---KPNAVVYTTLMTAHAKEGR 466

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   +L  M   G LPDV  Y  ++ G C A ++EEA  +L EM  +   P+  TY  
Sbjct: 467 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 526

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           F+         + A R +  M+  G  P+V  Y  LI  + + G    AF  +  +  R 
Sbjct: 527 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 586

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             QDV TY V+I GL    K+ EA  +  E+  KGL LP
Sbjct: 587 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL-LP 624



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 190/443 (42%), Gaps = 58/443 (13%)

Query: 39  KVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVP--LTTDSVVGVLQRFQF-EE 95
           +   ++ DSV ++  L  +         N +  ++S  +P  L TD +  V+ + Q  + 
Sbjct: 27  QALTQNEDSVREITTLLNS--------HNWQALMESSDIPKKLNTDIIRSVILQNQVGDP 78

Query: 96  KIAFRFFMWAGHQ--DNYAHEPLAY--NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151
           K    FF W+ H+   + A + L     L +++ +S  Y      + C +     RN+  
Sbjct: 79  KRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCII-----RNSDS 133

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPN 210
             P+ VL  I+K Y         P     ++L+D+  K G +  A  +    KN + +P+
Sbjct: 134 --PLAVLGSIVKCYR---SCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPS 188

Query: 211 ANTYN-ILG-----------MQTLEEMIQMGHAPDNFTYNTAIDTFCK------------ 246
             + N +LG            +  + M      PD +TY   I   CK            
Sbjct: 189 LLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLL 248

Query: 247 -----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
                AR++ EA +L   M  KG     P   TY I+I       R  E   +L  MI+ 
Sbjct: 249 EMGEKARLLDEAIELKRSMVDKGLV---PDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G  P+  TY  +++G    G +E+A++  +EM   G   +++ +N  L  +C     ++A
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 365

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           L +   M+E G  P  QTY++LI  +        AFE   EM KR  A  V TY V+I+G
Sbjct: 366 LEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIING 425

Query: 422 LFDCSKVEEACFLLEEVVNKGLK 444
           L  C  ++    +L E+V  GLK
Sbjct: 426 LCRCGNLQGTNAILREMVMNGLK 448



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 143/324 (44%), Gaps = 17/324 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---- 217
           + + E +     P +     L++  CK G V  A ++ + +   +V  +  TY++L    
Sbjct: 542 RYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGL 601

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                         E+ + G  P+ FTYN+ I   CK   V +A+ L E M  KG    +
Sbjct: 602 SRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI---N 658

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY I+I  L +   +E   +L   +   G  P+  TY  +++G C +     A++ 
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 718

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LEEM  +G PPD   YN  L   C  +  ++AL L+  M+E G + S  ++N LI  Y +
Sbjct: 719 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCK 777

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G+   A     EM ++    +  TY  +ID       + EA  L  E+  + +    + 
Sbjct: 778 SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKT 837

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           + S L     IG++  +  L + M
Sbjct: 838 YTSLLHGYHNIGNMSEVSALFEEM 861



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 154/354 (43%), Gaps = 30/354 (8%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV-----------PVDVLLMIL 162
           EP+ YN +ID         + FR+   M+      N +              ++  L I+
Sbjct: 310 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 369

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--GM 219
           ++  EK     +P+    +LL++  C+   +  A E + +  K K+ P   TY+++  G+
Sbjct: 370 QEMMEK---GVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 426

Query: 220 ----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                       L EM+  G  P+   Y T +    K   V E+  + E MR +G     
Sbjct: 427 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL--- 483

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    Y  +I+   +  RMEE  + L  M+     P+  TY   ++G   AG++E A ++
Sbjct: 484 PDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRY 543

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM + G  P++  Y   ++  C   N  EA  ++  ++       VQTY++LI     
Sbjct: 544 FNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G+   AF  + E+ ++G   +  TY  +I G      V++A  LLEE+  KG+
Sbjct: 604 NGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI 657



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 140/317 (44%), Gaps = 15/317 (4%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
           K  P++     ++ A CK G V  A    KRV  ++   A   +   ++    M+  G  
Sbjct: 219 KVLPDVYTYTNMISAHCKVGNVKDA----KRVLLEMGEKARLLD-EAIELKRSMVDKGLV 273

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD +TY+  I+ FC  +   EA  +   M   G     P   TY  +I   ++   +E+ 
Sbjct: 274 PDLYTYDILINGFCMEKRSREAKLMLLEMIDVGL---KPEPITYNALIDGFMRQGDIEQA 330

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           F +   M+  G   ++  +  +L G+C AGK+E+A + ++EM  KG  PD  TY+  ++ 
Sbjct: 331 FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEG 390

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C  +N   A  L   M +    P+V TY+++I+     G   G      EM   G   +
Sbjct: 391 HCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPN 450

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
              Y  ++       +VEE+  +LE +  +G+ LP    D +     +IG   A  K  +
Sbjct: 451 AVVYTTLMTAHAKEGRVEESRMILERMREQGI-LP----DVFCYNSLIIGFCKA--KRME 503

Query: 472 HMRKFYNPVIARRLALN 488
             R +   ++ RRL  N
Sbjct: 504 EARTYLMEMLERRLRPN 520



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTY--------NILGMQTL----EEMIQMG 229
           L+D  CK G++  A+ +   ++ + V P A TY        NI  M  +    EEM+  G
Sbjct: 806 LIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG 865

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP---TAKTYAIMIVALVQND 286
             PD  TY   ID +C+   V EA  L + +  KG  + S       T +++        
Sbjct: 866 IEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAG 925

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
            M+E   +L  M+  G + + ++  ++++G       E++   L++M 
Sbjct: 926 NMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 973



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 70/179 (39%), Gaps = 49/179 (27%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEMI+    P++ TY + ID  CKA M+ EA  L+  M+ +      PTAKTY  ++  
Sbjct: 788 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM---PTAKTYTSLLHG 844

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----------------------- 318
                 M E  +L   M+  G  PD  TY  +++  C                       
Sbjct: 845 YHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMK 904

Query: 319 ------------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD-NKNG 358
                             +AG ++EA + L  M   G+    V+    L  L D N+NG
Sbjct: 905 SGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGW----VSNTTSLGDLVDGNQNG 959


>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
 gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
          Length = 528

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 130/285 (45%), Gaps = 27/285 (9%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230
           LLD LCK      A  I  + K K  PN   Y IL              + L++M+  G 
Sbjct: 196 LLDTLCKYKYPKVATEIFNKRKYKYNPNEKMYTILIYGWCKVNRNDMARKFLKDMLDHGI 255

Query: 231 APDNFTYNTAIDTFCKA----------RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            P+  TYN  ++  C+           R V  A D+ + MR +G     P   +Y+I++ 
Sbjct: 256 EPNIVTYNILLNGICRHASLHPDYRFDRTVHSAEDVLKEMRDRGI---EPDVTSYSIILH 312

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  + E C  +   M + G  P V+TY  V++ +   G++E+A   L+EM  +G  P
Sbjct: 313 VYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAETLLDEMVAEGVCP 372

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW--PSVQTYNMLISMYFELGEPDGAFE 398
              TYNCF K      +   AL+LY +M + G    P + TYN+L+ M+ +L       +
Sbjct: 373 SPATYNCFFKEYRGRNDVSGALQLYNKMKQPGSLTAPDIHTYNILLGMFIKLNRHGSVKD 432

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            W +M +     D+D+Y ++I G     K  EAC    E++ KG 
Sbjct: 433 IWSDMCESTVGPDLDSYTLLIHGFCASQKWREACQFFMEMIEKGF 477



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 27/268 (10%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------GM--QT 221
           V T+P  +A + ++DAL +    D A  +          +  ++ +L       GM  Q 
Sbjct: 114 VNTRPPPDAYDAVVDALARARQFDAAWRVVVDASADGAASPRSFAVLARRYVAAGMTRQA 173

Query: 222 LEEMIQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           +     M    G   ++  + T +DT CK +    A ++F   + K     +P  K Y I
Sbjct: 174 VRAFDDMEAFVGREANSAEFATLLDTLCKYKYPKVATEIFNKRKYK----YNPNEKMYTI 229

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF-------- 329
           +I    + +R +     L  M++ G  P++ TY  +L G+C    +   Y+F        
Sbjct: 230 LIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHSAE 289

Query: 330 --LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             L+EM ++G  PD+ +Y+  L V       +  + ++  M + G  P+V TY  +I   
Sbjct: 290 DVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCL 349

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTY 415
              G  + A     EM   G      TY
Sbjct: 350 ASCGRLEDAETLLDEMVAEGVCPSPATY 377



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +     ++  L  CG ++ AET+                      L+EM+  G  P  
Sbjct: 337 PTVATYTSVIKCLASCGRLEDAETL----------------------LDEMVAEGVCPSP 374

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN     +     V+ A  L+  M+  GS +++P   TY I++   ++ +R      +
Sbjct: 375 ATYNCFFKEYRGRNDVSGALQLYNKMKQPGS-LTAPDIHTYNILLGMFIKLNRHGSVKDI 433

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
              M  S   PD+ +Y  ++ G C + K  EA +F  EM  KG+ P  +T+    + L
Sbjct: 434 WSDMCESTVGPDLDSYTLLIHGFCASQKWREACQFFMEMIEKGFLPQKITFETLYRGL 491


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 124/274 (45%), Gaps = 15/274 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N+ +  LC+ G +  A  +   ++    P+  TYN L             M  L  M+  
Sbjct: 225 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 284

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  PD+FTYNT ID +CK  MV EA +L +    KG     P   TY  +I  L     +
Sbjct: 285 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV---PDQVTYCSLINGLCAEGDV 341

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L       G  PD+  Y  +++G+CL G +  A + + EM  +G  PDI TYN  
Sbjct: 342 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 401

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC   N  +A  +    I  G  P V T+N LI  Y +  + D A +    M + G 
Sbjct: 402 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 461

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           A D  TY  +++GL    KV E     +E++ KG
Sbjct: 462 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKG 495



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 16/311 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           L+ + E      +P+I   N L+  LC  GL+ +A + + +  +    P+  TYNI+   
Sbjct: 345 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 404

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        + + I  G+ PD FT+NT ID +CK   +  A  L E M   G    
Sbjct: 405 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI--- 461

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   TY  ++  L +  ++ E       MI  GC P+  TY  ++E  C + K+EEA K
Sbjct: 462 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 521

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            + +M  +G  PD V++N  +   C N + + A  L+ ++ E G   +  T+N LI  + 
Sbjct: 522 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFS 581

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                  A + + EM  +G   D  TY V+IDG    + V+ A   L E++ KG      
Sbjct: 582 GKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 641

Query: 449 KFDSYLMQLSV 459
            F   +  L+V
Sbjct: 642 TFGRVINSLTV 652



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 21/292 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LC  G V+ A  +    + K +KP+   YN L             +Q + EM + G
Sbjct: 331 LINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG 390

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TYN  I+  CK   +++A  +      KG     P   T+  +I    +  +++
Sbjct: 391 CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL---PDVFTFNTLIDGYCKRLKLD 447

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               L+  M   G  PD  TY  VL G+C AGKV E  +  +EM  KG  P+ +TYN  +
Sbjct: 448 SALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILI 507

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           +  C +   +EA ++  +M + G  P   ++N LI  +   G+ +GA+  + +++++G +
Sbjct: 508 ENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 567

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              DT+  +I        +  A  + +E+++KG      + DSY  ++ + G
Sbjct: 568 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG-----HRADSYTYRVLIDG 614



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 16/300 (5%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYN 215
           ++L  L+   E  +    P+I   N++++ LCK G +  A  +    +     P+  T+N
Sbjct: 375 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFN 434

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +Q +E M + G APD  TYN+ ++  CKA  V E  + F+ M  K
Sbjct: 435 TLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK 494

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY I+I    ++++MEE   ++  M   G  PD  ++  ++ G C  G +
Sbjct: 495 GC---HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E AY   +++  KGY     T+N  +       N   A +++  M+  G      TY +L
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 611

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I    +    D A+    EM K+G    + T+  +I+ L    +V +A  ++  +V  G+
Sbjct: 612 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGV 671



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P+    N ++D  CK  +V  A  + K  V     P+  TY  L             ++ 
Sbjct: 288 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL 347

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             E    G  PD   YN+ +   C   ++  A  +   M  +G     P  +TY I+I  
Sbjct: 348 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGC---HPDIQTYNIVING 404

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   + +   ++   I  G LPDV T+  +++G C   K++ A + +E M   G  PD
Sbjct: 405 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 464

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +TYN  L  LC     +E    +  MI  GC P+  TYN+LI  +    + + A +   
Sbjct: 465 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 524

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M + G   D  ++  +I G      +E A  L +++  KG       F++ +   S   
Sbjct: 525 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKL 584

Query: 462 DLGAIHKLSDHM 473
           ++    K+ D M
Sbjct: 585 NMHMAEKIFDEM 596



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 148/366 (40%), Gaps = 67/366 (18%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT--- 173
           AYN ++D L    Y  +  ++   ML          V  D+       +T  I++++   
Sbjct: 87  AYNAIMDALVDAAYHDQAHKVYVRML-------AAGVSPDL-------HTHTIRLRSFCL 132

Query: 174 --QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
             +P I AL LL  AL   G V Y   +C      +  + +T++    Q  ++M+     
Sbjct: 133 TARPHI-ALRLL-RALPHRGAVAYCTVVCG-----LYAHGHTHD--ARQLFDQMLHTHVF 183

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+   +N  +   CK   V EA  L   +  +G +I+     TY I I  L +  R+ E 
Sbjct: 184 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSIN---LFTYNIWIRGLCEAGRLPEA 240

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN---------------- 335
             L+  M  +  +PDV TY  ++ G+C     +EA  +L  M N                
Sbjct: 241 VRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 299

Query: 336 -------------------KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
                              KG+ PD VTY   +  LC   + + AL L+      G  P 
Sbjct: 300 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 359

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +  YN L+      G    A +  +EM + GC  D+ TY ++I+GL     + +A  ++ 
Sbjct: 360 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 419

Query: 437 EVVNKG 442
           + + KG
Sbjct: 420 DAIMKG 425



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N +L+ LCK G V+   ET  + +     PN  TYNIL              + 
Sbjct: 463 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 522

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + +M Q G  PD  ++NT I  FC+   +  A  LF+ +  KG    S TA T+  +I A
Sbjct: 523 IVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGY---SATADTFNTLIGA 579

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                 M     +   M++ G   D  TY+ +++G C    V+ AY  L EM  KG+ P 
Sbjct: 580 FSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 639

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           + T+   +  L  N    +A+ +   M+++G  P V
Sbjct: 640 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 675



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 103/292 (35%), Gaps = 68/292 (23%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y  +I  + +A  + +A D FE M         P A  Y  ++ ALV     ++   +  
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFAC---PPAAPAYNAIMDALVDAAYHDQAHKVYV 109

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP----------------- 339
            M+ +G  PD+ T+   L   CL  +   A + L  + ++G                   
Sbjct: 110 RMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHD 169

Query: 340 --------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG---------CW-- 374
                         P++  +N  L  LC   +  EA  L G++I+ G          W  
Sbjct: 170 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIR 229

Query: 375 -----------------------PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                                  P V TYN LI    +   P  A      M  +GC  D
Sbjct: 230 GLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPD 289

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             TY  +IDG    S V+EA  LL++ V KG       + S +  L   GD+
Sbjct: 290 DFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 341



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 4/205 (1%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y   I A  +  R+ +       M    C P    Y  +++ +  A   ++A+K    M 
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  PD+ T+   L+  C       ALRL   +   G       Y  ++   +  G   
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTH 168

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A + + +M       ++  +  ++  L     V EA  LL +V+ +G+ +    ++ ++
Sbjct: 169 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 228

Query: 455 MQLSVIGDLGAIHKLSDHMRKFYNP 479
             L   G L    +L D MR +  P
Sbjct: 229 RGLCEAGRLPEAVRLVDGMRAYAVP 253


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 124/274 (45%), Gaps = 15/274 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N+ +  LC+ G +  A  +   ++    P+  TYN L             M  L  M+  
Sbjct: 226 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 285

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  PD+FTYNT ID +CK  MV EA +L +    KG     P   TY  +I  L     +
Sbjct: 286 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV---PDQVTYCSLINGLCAEGDV 342

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L       G  PD+  Y  +++G+CL G +  A + + EM  +G  PDI TYN  
Sbjct: 343 ERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 402

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC   N  +A  +    I  G  P V T+N LI  Y +  + D A +    M + G 
Sbjct: 403 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 462

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           A D  TY  +++GL    KV E     +E++ KG
Sbjct: 463 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKG 496



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 16/311 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           L+ + E      +P+I   N L+  LC  GL+ +A + + +  +    P+  TYNI+   
Sbjct: 346 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 405

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        + + I  G+ PD FT+NT ID +CK   +  A  L E M   G    
Sbjct: 406 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI--- 462

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   TY  ++  L +  ++ E       MI  GC P+  TY  ++E  C + K+EEA K
Sbjct: 463 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 522

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            + +M  +G  PD V++N  +   C N + + A  L+ ++ E G   +  T+N LI  + 
Sbjct: 523 VIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFS 582

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                  A + + EM  +G   D  TY V+IDG    + V+ A   L E++ KG      
Sbjct: 583 GKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 642

Query: 449 KFDSYLMQLSV 459
            F   +  L+V
Sbjct: 643 TFGRVINSLTV 653



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 21/292 (7%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LC  G V+ A  +    + K +KP+   YN L             +Q + EM + G
Sbjct: 332 LINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG 391

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TYN  I+  CK   +++A  +      KG     P   T+  +I    +  +++
Sbjct: 392 CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL---PDVFTFNTLIDGYCKRLKLD 448

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               L+  M   G  PD  TY  VL G+C AGKV E  +  +EM  KG  P+ +TYN  +
Sbjct: 449 SALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILI 508

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           +  C +   +EA ++  +M + G  P   ++N LI  +   G+ +GA+  + +++++G +
Sbjct: 509 ENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 568

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              DT+  +I        +  A  + +E+++KG      + DSY  ++ + G
Sbjct: 569 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG-----HRADSYTYRVLIDG 615



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 16/300 (5%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYN 215
           ++L  L+   E  +    P+I   N++++ LCK G +  A  +    +     P+  T+N
Sbjct: 376 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFN 435

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +Q +E M + G APD  TYN+ ++  CKA  V E  + F+ M  K
Sbjct: 436 TLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK 495

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY I+I    ++++MEE   ++  M   G  PD  ++  ++ G C  G +
Sbjct: 496 GC---HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E AY   +++  KGY     T+N  +       N   A +++  M+  G      TY +L
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 612

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I    +    D A+    EM K+G    + T+  +I+ L    +V +A  ++  +V  G+
Sbjct: 613 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGV 672



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P+    N ++D  CK  +V  A  + K  V     P+  TY  L             ++ 
Sbjct: 289 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL 348

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             E    G  PD   YN+ +   C   ++  A  +   M  +G     P  +TY I+I  
Sbjct: 349 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGC---HPDIQTYNIVING 405

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   + +   ++   I  G LPDV T+  +++G C   K++ A + +E M   G  PD
Sbjct: 406 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 465

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +TYN  L  LC     +E    +  MI  GC P+  TYN+LI  +    + + A +   
Sbjct: 466 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 525

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M + G   D  ++  +I G      +E A  L +++  KG       F++ +   S   
Sbjct: 526 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKL 585

Query: 462 DLGAIHKLSDHM 473
           ++    K+ D M
Sbjct: 586 NMHMAEKIFDEM 597



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 148/366 (40%), Gaps = 67/366 (18%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT--- 173
           AYN ++D L    Y  +  ++   ML          V  D+       +T  I++++   
Sbjct: 88  AYNAIMDALVDAAYHDQAHKVYVRML-------AAGVSPDL-------HTHTIRLRSFCL 133

Query: 174 --QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
             +P I AL LL  AL   G V Y   +C      +  + +T++    Q  ++M+     
Sbjct: 134 TARPHI-ALRLL-RALPHRGAVAYCTVVCG-----LYAHGHTHD--ARQLFDQMLHTHVF 184

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+   +N  +   CK   V EA  L   +  +G +I+     TY I I  L +  R+ E 
Sbjct: 185 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSIN---LFTYNIWIRGLCEAGRLPEA 241

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN---------------- 335
             L+  M  +  +PDV TY  ++ G+C     +EA  +L  M N                
Sbjct: 242 VRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 300

Query: 336 -------------------KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
                              KG+ PD VTY   +  LC   + + AL L+      G  P 
Sbjct: 301 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 360

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +  YN L+      G    A +  +EM + GC  D+ TY ++I+GL     + +A  ++ 
Sbjct: 361 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 420

Query: 437 EVVNKG 442
           + + KG
Sbjct: 421 DAIMKG 426



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N +L+ LCK G V+   ET  + +     PN  TYNIL              + 
Sbjct: 464 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 523

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + +M Q G  PD  ++NT I  FC+   +  A  LF+ +  KG    S TA T+  +I A
Sbjct: 524 IVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGY---SATADTFNTLIGA 580

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                 M     +   M++ G   D  TY+ +++G C    V+ AY  L EM  KG+ P 
Sbjct: 581 FSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 640

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           + T+   +  L  N    +A+ +   M+++G  P V
Sbjct: 641 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 676



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 103/292 (35%), Gaps = 68/292 (23%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y  +I  + +A  + +A D FE M         P A  Y  ++ ALV     ++   +  
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFAC---PPAAPAYNAIMDALVDAAYHDQAHKVYV 110

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP----------------- 339
            M+ +G  PD+ T+   L   CL  +   A + L  + ++G                   
Sbjct: 111 RMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHD 170

Query: 340 --------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG---------CW-- 374
                         P++  +N  L  LC   +  EA  L G++I+ G          W  
Sbjct: 171 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIR 230

Query: 375 -----------------------PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                                  P V TYN LI    +   P  A      M  +GC  D
Sbjct: 231 GLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPD 290

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             TY  +IDG    S V+EA  LL++ V KG       + S +  L   GD+
Sbjct: 291 DFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDV 342



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 4/205 (1%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y   I A  +  R+ +       M    C P    Y  +++ +  A   ++A+K    M 
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  PD+ T+   L+  C       ALRL   +   G       Y  ++   +  G   
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTH 169

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A + + +M       ++  +  ++  L     V EA  LL +V+ +G+ +    ++ ++
Sbjct: 170 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 229

Query: 455 MQLSVIGDLGAIHKLSDHMRKFYNP 479
             L   G L    +L D MR +  P
Sbjct: 230 RGLCEAGRLPEAVRLVDGMRAYAVP 254


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 146/333 (43%), Gaps = 44/333 (13%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N+ +  LC+ G ++ A  + +R+   V P+  TYN L              Q L  M+  
Sbjct: 250 NIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQ 309

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------STISS---------- 269
           G  PD+FTYNT ID +CK+ M+ EA +L +    KG         S I+           
Sbjct: 310 GCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERA 369

Query: 270 -------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
                        P    Y  ++  L +   +     ++  M+  GC PD+ TY  ++ G
Sbjct: 370 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIING 429

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C  G + +A   + +   KGY PD+ T+N  +   C     D AL+L  RM   G  P 
Sbjct: 430 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD 489

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TYN +++   + G+     ET+ EM  +GC  +  TY ++I+     +++EEA  ++ 
Sbjct: 490 VITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 549

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            +   GL      F++ +      GDL   + L
Sbjct: 550 RMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLL 582



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           L+ + E      +P++   N L+  LC+ GL+ +A + + + V+    P+  TYNI+   
Sbjct: 370 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIING 429

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        + + I  G+ PD FT+NT ID +CK   +  A  L E M T G    
Sbjct: 430 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGI--- 486

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   TY  ++  L +  + +E       MI  GC P+  TY  ++E  C   ++EEA  
Sbjct: 487 APDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASG 546

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            +  M   G  PD V++N  +   C N + D A  L+ ++ E G   +  T+N+LI  Y 
Sbjct: 547 VIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYS 606

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                  A + + EM  +G   D+ TY +++DGL   + V+ A   L E+++KG 
Sbjct: 607 SKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGF 661



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 134/275 (48%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LC  G ++ A  +    + K +KP+   YN L             +Q + EM++ G
Sbjct: 356 LINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEG 415

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD +TYN  I+  CK   +++AA +      KG     P   T+  +I    +  +++
Sbjct: 416 CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYL---PDVFTFNTLIDGYCKRLKLD 472

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               L+  M   G  PDV TY  VL G+C AGK +E  +  EEM  KG  P+ +TYN  +
Sbjct: 473 SALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILI 532

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           +  C     +EA  +  RM + G  P   ++N LI  +   G+ DGA+  + ++D++G +
Sbjct: 533 ENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYS 592

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              DT+ ++I        ++ A  +  E+++KG K
Sbjct: 593 ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 627



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 138/300 (46%), Gaps = 16/300 (5%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYN 215
           ++L  L+   E ++    P+I   N++++ LCK G + D A  +   +     P+  T+N
Sbjct: 400 LILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFN 459

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +Q +E M   G APD  TYN+ ++  CKA    E  + FE M  K
Sbjct: 460 TLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILK 519

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P A TY I+I    + +++EE   ++  M   G +PD  ++  ++ G C  G +
Sbjct: 520 GC---RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDL 576

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           + AY   +++  KGY     T+N  +       N   A +++G MI  G  P + TY +L
Sbjct: 577 DGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRIL 636

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +    +    D A+    EM  +G    + T+  M++ L    +V EA  ++  +V  G+
Sbjct: 637 VDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGV 696



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 145/311 (46%), Gaps = 15/311 (4%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--GM---QTLEEMI-- 226
           P++   N +L ALC+ G +++    + K +K  +  N  T NI   G+     LEE +  
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268

Query: 227 --QMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             +MG   APD  TYNT +   CK   V EAA     M  +G     P   TY  +I   
Sbjct: 269 VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCI---PDDFTYNTIIDGY 325

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++  ++E   LL   +  G +PD  TY  ++ G+C  G +E A +   E   K   PD+
Sbjct: 326 CKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDL 385

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V YN  +K LC       AL++   M+E GC P + TYN++I+   ++G    A    ++
Sbjct: 386 VVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMND 445

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
              +G   DV T+  +IDG     K++ A  L+E +   G+      ++S L  L   G 
Sbjct: 446 AIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGK 505

Query: 463 LGAIHKLSDHM 473
              +++  + M
Sbjct: 506 AKEVNETFEEM 516



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 109/216 (50%), Gaps = 16/216 (7%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL-----GMQTLEE---- 224
           P++   N +L+ LCK G   +  ET  + +    +PNA TYNIL      +  LEE    
Sbjct: 488 PDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGV 547

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M Q G  PD  ++NT I  FC+   +  A  LF+ +  KG    S TA T+ I+I A
Sbjct: 548 IVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGY---SATADTFNILIGA 604

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                 M+    + G MI+ G  PD+ TY+ +++G+C A  V+ AY  L EM +KG+ P 
Sbjct: 605 YSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPS 664

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           + T+   L +L  N    EA+ +   M+ +G  P V
Sbjct: 665 MATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEV 700



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 113/305 (37%), Gaps = 61/305 (20%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P   A N ++DAL      D A  +  R                      M+  G APD 
Sbjct: 104 PAAPAYNAIMDALVNAAYHDQAHKVYVR----------------------MLAAGVAPDA 141

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T+   + +FC       A  L   +  +G   + P A  Y  ++  L  +        L
Sbjct: 142 RTHTVRLKSFCLTGRPHVALRLLRSLSERGCD-AKPAA--YCTVVRGLYAHGHGYNARHL 198

Query: 295 LGHMINSGCLPDVSTYKEVLE-----------------------------------GMCL 319
              M+     PDV+T+  VL                                    G+C 
Sbjct: 199 FDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCE 258

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
            G++EEA   +E MG     PD+VTYN  ++ LC +    EA +  GRM+  GC P   T
Sbjct: 259 DGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFT 317

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN +I  Y + G    A E   +   +G   D  TYC +I+GL     +E A  L  E  
Sbjct: 318 YNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQ 377

Query: 440 NKGLK 444
            K LK
Sbjct: 378 AKDLK 382



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 3/201 (1%)

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV--STYKEVLEGMCLAGK 322
           S +++ T   Y  +I  LV   R+++  + L     S   PD     Y   ++    AG+
Sbjct: 28  SELTASTIPAYRALIRELVSAGRLDDVDAALASA-RSHLAPDSLQPLYVASIQAYARAGR 86

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +  A    E M     PP    YN  +  L +    D+A ++Y RM+  G  P  +T+ +
Sbjct: 87  LRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTV 146

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +  +   G P  A      + +RGC      YC ++ GL+       A  L +E++ + 
Sbjct: 147 RLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRD 206

Query: 443 LKLPYRKFDSYLMQLSVIGDL 463
           +      F++ L  L   GD+
Sbjct: 207 VFPDVATFNNVLHALCQKGDV 227



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 65/169 (38%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y   I A  +  R+         M    C P    Y  +++ +  A   ++A+K    M 
Sbjct: 74  YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRML 133

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  PD  T+   LK  C       ALRL   + E GC      Y  ++   +  G   
Sbjct: 134 AAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGY 193

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            A   + EM  R    DV T+  ++  L     V E+  LL +V+ +G+
Sbjct: 194 NARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGM 242


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 140/297 (47%), Gaps = 18/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M+ K Y + ++V   P I+  N+L+ A CK G V+ AE +   ++++ + P+  TYN L 
Sbjct: 180 MVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 239

Query: 218 ------GMQ-----TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                 GM        + M + G +PD  TYN+ I  FC+   + EA  LF      G+T
Sbjct: 240 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFR--EINGAT 297

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY  +I    + + +EE   L   M   G  P V TY  +L  +C  GK+++A
Sbjct: 298 ---PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDA 354

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            + L EM  +   PD VT N  +   C   +   A+++  +M+E G  P   T+  LI  
Sbjct: 355 NRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHG 414

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +L E D A E   EM   G +    TY  ++D  +D    E    L +E+  KGL
Sbjct: 415 FCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGL 471



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI--------------VALVQ 284
           T I T  K +    A +L E +  +   +SSP+     + I              V    
Sbjct: 80  TMIHTLAKHKQFKTAQNLLERIAVR-DYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYA 138

Query: 285 NDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           N RM ++   +  HM   G  P +     +L  +  A      +K  ++M   G  P+I 
Sbjct: 139 NSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIH 198

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            +N  +   C + + ++A +L   M     +P + TYN LIS+Y + G    A      M
Sbjct: 199 IFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRM 258

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           ++ G + D+ TY  +I G     ++ EA  L  E+
Sbjct: 259 ERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI 293


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 183 LLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  LC  G   D A+ + + +   + P+  T++ L              +   EMI  G
Sbjct: 315 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 374

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            APD  TYN+ ID FCK   + EA  +F+ M +KG     P   TY+I+I +  +  R++
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC---EPDIVTYSILINSYCKAKRVD 431

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L   + + G +P+  TY  ++ G C +GK+  A +  +EM ++G PP +VTY   L
Sbjct: 432 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 491

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LCDN   ++AL ++ +M +      +  YN++I       + D A+  +  +  +G  
Sbjct: 492 DGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 551

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            DV TY VMI GL     + EA  L  ++   G
Sbjct: 552 PDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 584



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 139/277 (50%), Gaps = 16/277 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++++D+LCK G  D A ++   ++ K +K +  TY+ L            G + L EMI 
Sbjct: 278 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 337

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  T++  ID F K   + EA +L+  M T+G    +P   TY  +I    + + 
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI---APDTITYNSLIDGFCKENC 394

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   +   M++ GC PD+ TY  ++   C A +V++  +   E+ +KG  P+ +TYN 
Sbjct: 395 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 454

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C +   + A  L+  M+  G  PSV TY +L+    + GE + A E + +M K  
Sbjct: 455 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 514

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               +  Y ++I G+ + SKV++A  L   + +KG+K
Sbjct: 515 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 551



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKP 209
           VFV    LL   + Y E I     P+    N L+D  CK   +  A  +   + +K  +P
Sbjct: 353 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 412

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +  TY+IL            GM+   E+   G  P+  TYNT +  FC++  +  A +LF
Sbjct: 413 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 472

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + M ++G     P+  TY I++  L  N  + +   +   M  S     +  Y  ++ GM
Sbjct: 473 QEMVSRGV---PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 529

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C A KV++A+     + +KG  PD+VTYN  +  LC   +  EA  L+ +M E GC P  
Sbjct: 530 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 589

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            TYN+LI  +        + E   EM   G + D  T  ++ID L D
Sbjct: 590 FTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 636



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 45/315 (14%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTY------------N 215
           +++K +P++  ++ L++ LC  G V  A  +  R V+   +P+  TY            +
Sbjct: 196 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 255

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-----STISS- 269
            L +    +M +         Y+  ID+ CK     +A  LF  M  KG      T SS 
Sbjct: 256 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 315

Query: 270 --------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
                                     P   T++ +I   V+  ++ E   L   MI  G 
Sbjct: 316 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 375

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PD  TY  +++G C    + EA +  + M +KG  PDIVTY+  +   C  K  D+ +R
Sbjct: 376 APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 435

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  +   G  P+  TYN L+  + + G+ + A E + EM  RG    V TY +++DGL 
Sbjct: 436 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 495

Query: 424 DCSKVEEACFLLEEV 438
           D  ++ +A  + E++
Sbjct: 496 DNGELNKALEIFEKM 510



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G   D +T    I+ +C+ + +  A   F  +         P   T++ ++       R+
Sbjct: 129 GIEHDMYTMTIMINCYCRKKKLLFA---FSVLGRAWKLGYEPDTITFSTLVNGFCLEGRV 185

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E  +L+  M+     PD+ T   ++ G+CL G+V EA   ++ M   G+ PD VTY   
Sbjct: 186 SEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV 245

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L  LC + N   AL L+ +M E     SV  Y+++I    + G  D A   ++EM+ +G 
Sbjct: 246 LNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGI 305

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             DV TY  +I GL +  K ++   +L E++ + +
Sbjct: 306 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 340



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 7/238 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA--IMI 279
            E MIQ    P    +N      C A   T+  DL      KG  ++      Y   IMI
Sbjct: 87  FESMIQSRPLPTPIDFNR----LCSAVARTKQYDLV-LGFCKGMELNGIEHDMYTMTIMI 141

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +  ++   FS+LG     G  PD  T+  ++ G CL G+V EA   ++ M      
Sbjct: 142 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 201

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+VT +  +  LC      EAL L  RM+E G  P   TY  +++   + G    A + 
Sbjct: 202 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 261

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + +M++R     V  Y ++ID L      ++A  L  E+  KG+K     + S +  L
Sbjct: 262 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 45/228 (19%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------Q 220
           +P+I   ++L+++ CK   VD    + + + +K + PN  TYN  +LG           +
Sbjct: 411 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 470

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
             +EM+  G  P   TY   +D  C    + +A ++FE M+    T+             
Sbjct: 471 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 530

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY +MI  L +   + E   L   M   GC PD  
Sbjct: 531 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDF 590

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           TY  ++        +  + + +EEM   G+  D  T    + +L D +
Sbjct: 591 TYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRR 638


>gi|15240032|ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial; Flags: Precursor
 gi|9758420|dbj|BAB08962.1| unnamed protein product [Arabidopsis thaliana]
 gi|332003627|gb|AED91010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1030

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 169/391 (43%), Gaps = 26/391 (6%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           ++ +S  ++  ++AL+   V  T + VV VL+  + +     RFF W G ++ Y H   A
Sbjct: 621 VLSSSRDWERTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEA 680

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE----KIKVKT 173
           YN+ I +        K F+ + S+   M+R     +  D   +++ QY       I ++T
Sbjct: 681 YNMSIKVAGC----GKDFKQMRSLFYEMRRQG-CLITQDTWAIMIMQYGRTGLTNIAIRT 735

Query: 174 QPEINALNLL-LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
             E+  + L+   +  KC +      +C++    V+    T+         EMI+ G  P
Sbjct: 736 FKEMKDMGLIPSSSTFKCLIT----VLCEKKGRNVEEATRTFR--------EMIRSGFVP 783

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D       +   C+     +A    + +      I  P    Y+I I AL +  ++EE  
Sbjct: 784 DRELVQDYLGCLCEVGNTKDAKSCLDSL----GKIGFPVTVAYSIYIRALCRIGKLEEAL 839

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           S L        L D  TY  ++ G+   G +++A   +  M   G  P +  Y   +   
Sbjct: 840 SELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLIVYF 899

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
              K  ++ L    +M    C PSV TY  +I  Y  LG+ + A+  +  M++RG + D 
Sbjct: 900 FKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDF 959

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            TY   I+ L    K E+A  LL E+++KG+
Sbjct: 960 KTYSKFINCLCQACKSEDALKLLSEMLDKGI 990



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 176/417 (42%), Gaps = 34/417 (8%)

Query: 39  KVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
           KV  E  D  S V     +++   +   +ME  L+ L      + V  VL+R      +A
Sbjct: 114 KVLHEEVD-FSPVVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLA 172

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN--NKVFVPVD 156
            RFF W   +D ++H    YN M+ I      +A+   +V  ++  M++N  +K      
Sbjct: 173 MRFFNWVKQKDGFSHRVGIYNTMLSIAG----EARNLDMVDELVSEMEKNGCDKDIRTWT 228

Query: 157 VLLMILKQ----------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
           +L+ +  +          + +  K   + +  A N+++ +LC  G  D A    K +  K
Sbjct: 229 ILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEK 288

Query: 207 -VKPNANTYNIL-----------GMQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            +     TY +L            +Q++ ++M+++    ++  +   + +FC +  + EA
Sbjct: 289 GITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEA 348

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
            +L   ++ K   +    AK + I++  L + +RM +   ++  M     L D + Y  +
Sbjct: 349 LELIRELKNKEMCLD---AKYFEILVKGLCRANRMVDALEIVDIMKRRK-LDDSNVYGII 404

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G      V +A +  E +   G PP + TY   ++ L   K  ++   L+  MIE G 
Sbjct: 405 ISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGI 464

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            P       +++ +        A++ +  M+++G      +Y + +  L   S+ +E
Sbjct: 465 EPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDE 521



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 27/262 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK------------VKPNANTYNILGMQTL 222
            E +A   LL + C  G +  A  + + +KNK            VK       ++    +
Sbjct: 327 SEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEI 386

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            ++++     D+  Y   I  + +   V++A + FE ++  G     P   TY  ++  L
Sbjct: 387 VDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGR---PPRVSTYTEIMQHL 443

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  + E+  +L   MI +G  PD      V+ G     +V EA+K    M  KG  P  
Sbjct: 444 FKLKQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTW 503

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH- 401
            +Y+ F+K LC +   DE ++++ +M           ++ +IS      E +G  E  H 
Sbjct: 504 KSYSIFVKELCRSSRYDEIIKIFNQMHASKIVIRDDIFSWVISSM----EKNGEKEKIHL 559

Query: 402 --EMDKRGCAQDVDTYCVMIDG 421
             E+ KR      ++YC  ++G
Sbjct: 560 IKEIQKRS-----NSYCDELNG 576



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%)

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L+  M  +GC  D+ T+  ++     A K+ +     E+M   G+  D   YN  ++ LC
Sbjct: 211 LVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLC 270

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
               GD AL  Y  M+E G    ++TY ML+    +  + D       +M +     + D
Sbjct: 271 IAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHD 330

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            +  ++       K++EA  L+ E+ NK + L  + F+
Sbjct: 331 AFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFE 368



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 218  GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +  +  M ++G  P    Y + I  F K + + +  +  + M  +      P+  TY  
Sbjct: 873  ALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESC---EPSVVTYTA 929

Query: 278  MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            MI   +   ++EE ++   +M   G  PD  TY + +  +C A K E+A K L EM +KG
Sbjct: 930  MICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKG 989

Query: 338  YPPDIVTYNCFLKVLCDNKNGDEAL 362
              P  + +      L  N+ G   L
Sbjct: 990  IAPSTINFRTVFYGL--NREGKHDL 1012



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A +F   +  K G+   +  YN  L +  + +N D    L   M + GC   ++T+ +LI
Sbjct: 172 AMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILI 231

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           S+Y +  +       + +M K G   D   Y +MI  L    + + A    +E++ KG+ 
Sbjct: 232 SVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKGIT 291

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              R +   L  ++    +  +  ++D M
Sbjct: 292 FGLRTYKMLLDCIAKSEKVDVVQSIADDM 320



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 3/195 (1%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YNT +    +AR +    +L   M   G        +T+ I+I    +  ++ +   +  
Sbjct: 192 YNTMLSIAGEARNLDMVDELVSEMEKNGC---DKDIRTWTILISVYGKAKKIGKGLLVFE 248

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M  SG   D + Y  ++  +C+AG+ + A +F +EM  KG    + TY   L  +  ++
Sbjct: 249 KMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSE 308

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             D    +   M+ +        +  L+  +   G+   A E   E+  +    D   + 
Sbjct: 309 KVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFE 368

Query: 417 VMIDGLFDCSKVEEA 431
           +++ GL   +++ +A
Sbjct: 369 ILVKGLCRANRMVDA 383


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 33/345 (9%)

Query: 146 KRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN 205
           KR   V   +D ++ + +  ++  +    P+I     ++D +CK G  + A  I      
Sbjct: 235 KRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEI------ 288

Query: 206 KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           L  M   G  P+   YNT +   C A    +A +L   M  K  
Sbjct: 289 ----------------LSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNC 332

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
            +      T+ I++    QN  ++    LL  M+  GC+PDV TY  V+ G C  G ++E
Sbjct: 333 PLDD---VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDE 389

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A   L+ M + G  P+ ++Y   LK LC  +   +A  L  RMI+ GC P+  T+N +I+
Sbjct: 390 AVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIIN 449

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
              + G  + A E   +M   GC  D+ +Y  +IDGL    K EEA  LL  ++NKG+  
Sbjct: 450 FLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP 509

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
               + S    L+  G +  + ++ D+++          YN VI+
Sbjct: 510 NVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVIS 554



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 127/297 (42%), Gaps = 60/297 (20%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            N+L+D  C+ GLVD       RV               ++ LE+M++ G  PD  TY T
Sbjct: 339 FNILVDFFCQNGLVD-------RV---------------IELLEQMLEHGCMPDVITYTT 376

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I+ FCK  ++ EA  L + M + G     P   +Y I++  L   +R  +   L+  MI
Sbjct: 377 VINGFCKEGLIDEAVMLLKNMPSCGC---KPNTISYTIVLKGLCSTERWVDAEELMSRMI 433

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GCLP+  T+  ++  +C  G VE+A + L++M   G  PD+++Y+  +  L      +
Sbjct: 434 QQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTE 493

Query: 360 EALRLYGRMIEVGCWPSVQT-----------------------------------YNMLI 384
           EAL L   MI  G  P+V T                                   YN +I
Sbjct: 494 EALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVI 553

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           S   +  E D A +    M   GC  +  TY  +I GL     + EA  LL E+ ++
Sbjct: 554 SSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSR 610



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 126/318 (39%), Gaps = 56/318 (17%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTY-----NILG-------MQTLEEMIQM 228
           N ++   C+ G V+ A  +   V   V PNA TY      + G       +  L+EM   
Sbjct: 88  NAMVAGYCRVGQVEAARRLAAAVP--VPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSR 145

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK--------------- 273
              P    Y+  I++ C++   + A  + E +  KGST+ +                   
Sbjct: 146 SCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEG 205

Query: 274 -----------------TYAIMIVALVQN----------DRMEECFSLLGHMINSGCLPD 306
                            +Y  ++  L             D M +    L  M   GC PD
Sbjct: 206 LEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPD 265

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +  Y  +++G+C  G  E A + L  M + G  P++V YN  LK +C     ++A  L  
Sbjct: 266 IRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLT 325

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M +  C     T+N+L+  + + G  D   E   +M + GC  DV TY  +I+G     
Sbjct: 326 EMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEG 385

Query: 427 KVEEACFLLEEVVNKGLK 444
            ++EA  LL+ + + G K
Sbjct: 386 LIDEAVMLLKNMPSCGCK 403



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 16/226 (7%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G+A     YN  +  +C+   V EAA      R   +    P A TY  ++  L    R+
Sbjct: 79  GNAAGVVDYNAMVAGYCRVGQV-EAAR-----RLAAAVPVPPNAYTYFPVVRGLCGRGRI 132

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            +  ++L  M +  C+P    Y  ++E  C +G    A + LE +  KG   D    N  
Sbjct: 133 ADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLV 192

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE----------LGEPDGAFE 398
           +  +CD    DE L +  ++   GC   + +YN ++               + E     E
Sbjct: 193 INAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHE 252

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              +M + GC  D+  Y  +IDG+      E A  +L  + + GLK
Sbjct: 253 ALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLK 298



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 3/177 (1%)

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +G    V  Y  ++ G C  G+VE A +    +     PP+  TY   ++ LC      +
Sbjct: 78  AGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAVP---VPPNAYTYFPVVRGLCGRGRIAD 134

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           AL +   M    C P    Y+++I      G    A      +  +G   D     ++I+
Sbjct: 135 ALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVIN 194

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
            + D   V+E   +L ++   G +     +++ L  L      G + +L D M K +
Sbjct: 195 AICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVH 251


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 17/285 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+      ++D L K G  D   E   K V +K +P   TY +L                
Sbjct: 104 PDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDV 163

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEMI+ GH PD   Y++ ID   KA  V EA  L + M  +G     PTA  Y  ++  
Sbjct: 164 FEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGP---PPTAVAYTSIVAG 220

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R++E    +  M      P V TY  ++ G    GKVEEA+  +EEM ++   PD
Sbjct: 221 LCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPD 280

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            ++Y  F++ L      +EA +++  M+E GC P + TY ++I  + + G    A     
Sbjct: 281 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 340

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            MDK     +   Y +++DG    S++EEA  L + ++  G+ LP
Sbjct: 341 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGI-LP 384



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 3/215 (1%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            APD+ TY   +D   KA       + +E M    ++   PT  TY +++  L +  ++E
Sbjct: 102 EAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMV---ASKCEPTLLTYTVLVDGLCKAHKVE 158

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +   MI  G  PD+  Y  +++G+  AG+V+EA K ++ M  +G PP  V Y   +
Sbjct: 159 RACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIV 218

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC      EA++    M      P V TY+ +++ Y  +G+ + AF    EM  R CA
Sbjct: 219 AGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCA 278

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D  +Y + I+ L+   + EEA  + E +V KG K
Sbjct: 279 PDTISYTMFIEALYSIGRREEAEKVFETMVEKGCK 313



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 199/481 (41%), Gaps = 69/481 (14%)

Query: 28  SYIGKVPSLVCKVFD--ESSDSVSDVAKLYEAIIDN---SNAYDN----MEKALDSLGVP 78
           SY        C++F+  E+ DSV+     Y AI+D    +  YD      EK + S   P
Sbjct: 85  SYFNSRTEEACRLFEAIEAPDSVT-----YTAIVDGLFKAGNYDAGLEYYEKMVASKCEP 139

Query: 79  -LTTDSVV--GVLQRFQFEEKI-AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQ 134
            L T +V+  G+ +  + E     F   +  GH+ +     +AY+ +ID LS    KA +
Sbjct: 140 TLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDI----IAYSSLIDGLS----KAGR 191

Query: 135 FRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194
                 ++D M                       I     P   A   ++  LCKCG + 
Sbjct: 192 VDEARKLVDLM-----------------------IARGPPPTAVAYTSIVAGLCKCGRIQ 228

Query: 195 YA-ETICKRVKNKVKPNANTYNIL-----GM-------QTLEEMIQMGHAPDNFTYNTAI 241
            A +TI +  + +++P  +TY+ +     GM         +EEM     APD  +Y   I
Sbjct: 229 EAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFI 288

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           +         EA  +FE M  KG     P   TY I+I    +   M     +L  M  +
Sbjct: 289 EALYSIGRREEAEKVFETMVEKGC---KPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKA 345

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
              P+   Y  +++G   + ++EEA +  + +   G  P  VTYN  +  LC  K  DEA
Sbjct: 346 AVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEA 405

Query: 362 LRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           L L   M        PS+ TY+M+I    ++G  + AF+   EM   G   D  TY  +I
Sbjct: 406 LELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLI 465

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK-LSDHMRKFYN 478
             L    KV  A  LLEE++  G+  P       L+Q+    D+ A    L + MR  + 
Sbjct: 466 QTLAGAGKVSRAMELLEEMLKAGI-FPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGHT 524

Query: 479 P 479
           P
Sbjct: 525 P 525



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 15/221 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P+++   +++D  CK G +  A  + + + K  VKPN   Y ++             ++
Sbjct: 313 KPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALE 372

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             + +++ G  P   TYNT I+  CK + + EA +L   M+ +   +  P+  TY+++I 
Sbjct: 373 LYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELE-PSIVTYSMIIH 431

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +    E  F LL  MI++G +PD  TY  +++ +  AGKV  A + LEEM   G  P
Sbjct: 432 GLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFP 491

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           D  TY   +++LC   + D A  L   M+  G  P+  T+ 
Sbjct: 492 DDHTYGTLVQILC-RSDVDAAWDLLQEMMRNGHTPNEFTFK 531



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 18/251 (7%)

Query: 208 KPNANTYNIL--GMQT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           +PN +++NIL  G             L EM   G   +  T+   +   C  R + +A  
Sbjct: 26  EPNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDKAVS 85

Query: 256 LFEFMRTKGS-----TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            F   RT+ +      I +P + TY  ++  L +    +        M+ S C P + TY
Sbjct: 86  YFN-SRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTY 144

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G+C A KVE A    EEM  KG+ PDI+ Y+  +  L      DEA +L   MI 
Sbjct: 145 TVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIA 204

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+   Y  +++   + G    A +T  EM +R     VDTY  ++ G     KVEE
Sbjct: 205 RGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEE 264

Query: 431 ACFLLEEVVNK 441
           A  ++EE+ ++
Sbjct: 265 AFAVMEEMADR 275



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 10/203 (4%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +++ALV+  ++ +    LG   +S   P+VS++  +L G       E     L EM  +G
Sbjct: 3   LLLALVRGGQLSDA---LGFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKARG 59

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-------WPSVQTYNMLISMYFEL 390
              +  T+   L  LC  ++ D+A+  +    E  C        P   TY  ++   F+ 
Sbjct: 60  ITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKA 119

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G  D   E + +M    C   + TY V++DGL    KVE AC + EE++ KG K     +
Sbjct: 120 GNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAY 179

Query: 451 DSYLMQLSVIGDLGAIHKLSDHM 473
            S +  LS  G +    KL D M
Sbjct: 180 SSLIDGLSKAGRVDEARKLVDLM 202



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC------ 318
           S+IS P   ++ I++      D  E   +LL  M   G   + +T+  +L  +C      
Sbjct: 22  SSISEPNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLD 81

Query: 319 -----LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
                   + EEA +  E +      PD VTY   +  L    N D  L  Y +M+   C
Sbjct: 82  KAVSYFNSRTEEACRLFEAI----EAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKC 137

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P++ TY +L+    +  + + A + + EM ++G   D+  Y  +IDGL    +V+EA  
Sbjct: 138 EPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARK 197

Query: 434 LLEEVVNKG 442
           L++ ++ +G
Sbjct: 198 LVDLMIARG 206


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 183/425 (43%), Gaps = 49/425 (11%)

Query: 49  SDVAKLYEAIIDNSNA-YDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA-G 106
           +D A + + I+ + N  + + +  L +   P T + V  VL+R       A +FF +   
Sbjct: 23  ADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDN 82

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           H   Y H+  +++L IDI +        + L+  M     R+ ++        ++ ++Y 
Sbjct: 83  HHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRM-----RSLRIGPSPKTFAIVAERYA 137

Query: 167 EKIKVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
              K                  ++ + N +LD LCK   V+ A  + + ++ +       
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRF------ 191

Query: 214 YNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                            + D  TYN  ++ +C  +   +A ++ + M  +G    +P   
Sbjct: 192 -----------------SVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGI---NPNLT 231

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  M+    +  ++   +     M    C  DV TY  V+ G  +AG+++ A    +EM
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P + TYN  ++VLC   N + A+ ++  M+  G  P+V TYN+LI   F  GE 
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEF 351

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
               E    M+  GC  +  TY +MI    +CS+VE+A  L E+ +  G  LP    D+Y
Sbjct: 352 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEK-MGSGDCLP--NLDTY 408

Query: 454 LMQLS 458
            + +S
Sbjct: 409 NILIS 413


>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Brachypodium distachyon]
          Length = 721

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 172/397 (43%), Gaps = 24/397 (6%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQ-RFQFEEKIAFR 100
           +  S  V D  +L E      +    +E  L  L   L+   V  VL+ + Q + + AF 
Sbjct: 55  ESRSRLVRDTCRLLE---QRGSWTPKLEAQLRHLLRVLSPPQVRAVLRAQAQGDARAAFE 111

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLL 159
           FF WA  Q  Y H P  ++ M+ +LS T+      R+V  M+   ++R  + F       
Sbjct: 112 FFRWADRQWQYRHAPEVFDEMLGLLSRTRLHDPARRVVRLMIRRGVRRGPRQFA------ 165

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
            ++  Y+   K+++   +  L L+    C   +     +IC    N +         LG 
Sbjct: 166 HLMLSYSRAGKLRSA--MRVLQLMQTDGCAPDI-----SICNVAVNVLVVAGRVDKALGF 218

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              + M ++G  PD  TYN  I   C  R V EA ++   M   G     P   +Y  ++
Sbjct: 219 A--DRMRRVGVEPDVVTYNCLIKGLCSVRRVVEALEMIGVMLKNG---CPPDKISYYTVM 273

Query: 280 VALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             L +  R+ E  SLL  M N +G L D  TY  ++  +   G  +EA +FL E   K +
Sbjct: 274 SFLCKEKRVSEVRSLLATMRNDAGLLTDQVTYNMLIHVLAKHGHADEALEFLRESEGKRF 333

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D V Y+  +   C N    EA  + G MI   C P V TY+ ++  +  +GE D A +
Sbjct: 334 RVDEVGYSAVVHSFCLNGRMAEAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARK 393

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
               M K GC  ++ T+  +++GL    K  EA  LL
Sbjct: 394 MMKHMYKNGCKPNIVTHTALLNGLCKVGKSSEAWELL 430



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 140/340 (41%), Gaps = 39/340 (11%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-------- 217
           E I  +  P++   + ++D  C+ G +D A  + K + KN  KPN  T+  L        
Sbjct: 362 EMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGLCKVG 421

Query: 218 -GMQTLEEMIQMGH---APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
              +  E + + G     P + TY+  +  F +   + E+ D+   M  KG     PT  
Sbjct: 422 KSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKGFF---PTTV 478

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
              ++I AL +  +  E    +    + GC  +V  +  V+ G    G +E A   L+++
Sbjct: 479 EINLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLLDDL 538

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 PD+VTY   +  L       EA  L  +M+  G  P++ TY  +I  Y E G  
Sbjct: 539 YLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVPTLVTYRTVIHRYCEKGTV 598

Query: 394 DGAFETWHEMDKRGCAQDVDT-YCVMIDGLFDCSKVEEA------------------C-F 433
           +   E    +DK    Q++ + Y  +I+ L    K+ EA                  C  
Sbjct: 599 E---ELVDLLDKMLARQELKSVYNQVIEKLCAFGKLNEAYGLLSKVLRTASQRDAQTCHI 655

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           L+E  +N+GL +        + Q ++I DL    K+ D +
Sbjct: 656 LMESFLNRGLTIQAYNVACRMFQRNLIPDLKLCQKVDDRL 695



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 41/285 (14%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q  HAP+ F  +  +    + R+   A  +   M  +G     P  + +A ++++  +  
Sbjct: 121 QYRHAPEVF--DEMLGLLSRTRLHDPARRVVRLMIRRG-VRRGP--RQFAHLMLSYSRAG 175

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++     +L  M   GC PD+S     +  + +AG+V++A  F + M   G  PD+VTYN
Sbjct: 176 KLRSAMRVLQLMQTDGCAPDISICNVAVNVLVVAGRVDKALGFADRMRRVGVEPDVVTYN 235

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWP------------------------------- 375
           C +K LC  +   EAL + G M++ GC P                               
Sbjct: 236 CLIKGLCSVRRVVEALEMIGVMLKNGCPPDKISYYTVMSFLCKEKRVSEVRSLLATMRND 295

Query: 376 -----SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
                   TYNMLI +  + G  D A E   E + +    D   Y  ++       ++ E
Sbjct: 296 AGLLTDQVTYNMLIHVLAKHGHADEALEFLRESEGKRFRVDEVGYSAVVHSFCLNGRMAE 355

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           A  ++ E+++K        + + +     IG++    K+  HM K
Sbjct: 356 AKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYK 400



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 124/315 (39%), Gaps = 47/315 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P I     LL+ LCK G    A E + K  ++   P+  TY+++               
Sbjct: 404 KPNIVTHTALLNGLCKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCD 463

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + +M+Q G  P     N  I   CK     EA +  E  ++KG TI+            
Sbjct: 464 VVAQMLQKGFFPTTVEINLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIHGFS 523

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY +++ AL +  R++E   L+  M+N G +P + 
Sbjct: 524 RQGDLESALSLLDDLYLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVPTLV 583

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V+   C  G VEE    L++M  +     +  YN  ++ LC     +EA  L  ++
Sbjct: 584 TYRTVIHRYCEKGTVEELVDLLDKMLARQELKSV--YNQVIEKLCAFGKLNEAYGLLSKV 641

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +        QT ++L+  +   G    A+     M +R    D+     + D L    + 
Sbjct: 642 LRTASQRDAQTCHILMESFLNRGLTIQAYNVACRMFQRNLIPDLKLCQKVDDRLVLEERK 701

Query: 429 EEACFLLEEVVNKGL 443
           + A  L+ + V +GL
Sbjct: 702 QAAGKLIVKFVERGL 716


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           E  K K  P +   +++++ LC+CG +     I +  V N +KPNA  Y  L        
Sbjct: 415 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 474

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTA 272
                   LE M + G  PD F YN+ I  FCKA+ + EA   L E +  +      P A
Sbjct: 475 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR----LRPNA 530

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY   I    +   ME        M++ G LP+V  Y  ++EG C  G V EA+     
Sbjct: 531 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRF 590

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           + ++    D+ TY+  +  L  N    EA  ++  + E G  P+  TYN LIS   + G 
Sbjct: 591 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 650

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D A +   EM  +G   D+ TY ++IDGL    ++E A  L +++  +GL
Sbjct: 651 VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 701



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 142/297 (47%), Gaps = 19/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNI-- 216
           MIL++  E+      P++   N L+   CK   ++ A T + + ++ +++PNA+TY    
Sbjct: 481 MILERMREQ---GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 537

Query: 217 ----------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                     +  +   EM+  G  P+   Y   I+  CK   VTEA  +F F+ ++   
Sbjct: 538 DGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVL 597

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
                 +TY+++I  L +N +M E F +   +   G LP+  TY  ++ G C  G V++A
Sbjct: 598 ---QDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 654

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            + LEEM  KG  PDIVTYN  +  LC     + A  L+  +   G  P+  TY  ++  
Sbjct: 655 SQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDG 714

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y +   P  AF+   EM  RG   D   Y V+++      K E+A  L +E++ KG 
Sbjct: 715 YCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF 771



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 138/329 (41%), Gaps = 50/329 (15%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTL 222
           ++   ++L+  L + G +  A  I   ++ K + PNA TYN L              Q L
Sbjct: 599 DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLL 658

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EEM   G  PD  TYN  ID  CKA  +  A +LF+ +  +G T   P   TYA M+   
Sbjct: 659 EEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT---PNCVTYAAMVDGY 715

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVL---------------------------- 314
            ++      F LL  M+  G  PD   Y  +L                            
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 775

Query: 315 ------EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
                 EG C +GK++EA   LEEM  K + P+ VTY   +   C      EA RL+  M
Sbjct: 776 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 835

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            E    P+ +TY  L+  Y  +G        + EM  +G   D  TY VMID       V
Sbjct: 836 QERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 895

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            EAC L +E++ KG+ +    +D+ +  L
Sbjct: 896 MEACKLKDEILVKGMPMSVAAYDALIQAL 924



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 196/458 (42%), Gaps = 70/458 (15%)

Query: 39  KVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVP--LTTDSVVGVLQRFQF-EE 95
           +   ++ DSV ++  L  +         N +  ++S  +P  L TD +  V+ + Q  + 
Sbjct: 18  QALTQNEDSVREITTLLNS--------HNWQALMESSDIPKKLNTDIIRSVILQNQVGDP 69

Query: 96  KIAFRFFMWAGHQ--DNYAHEPLAY--NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151
           K    FF W+ H+   + A + L     L +++ +S  Y      + C +     RN+  
Sbjct: 70  KRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYGPASDLIKCII-----RNSDS 124

Query: 152 FVPVDVLLMILKQY-------------------------TEKIKV-------KTQPEINA 179
             P+ VL  I+K Y                          E + V       + +P + +
Sbjct: 125 --PLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLS 182

Query: 180 LNLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
            N LL  L K   V+ + +       +KV P+  TY  +              + L EM 
Sbjct: 183 CNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMG 242

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G +P+  TYN  I   C+AR++ EA +L   M  KG     P   TY I+I       
Sbjct: 243 EKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLV---PDLYTYDILINGFCMEK 299

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  E   +L  MI+ G  P+  TY  +++G    G +E+A++  +EM   G   +++ +N
Sbjct: 300 RSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWN 359

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L  +C     ++AL +   M+E G  P  QTY++LI  +        AFE   EM KR
Sbjct: 360 TLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKR 419

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A  V TY V+I+GL  C  ++    +L E+V  GLK
Sbjct: 420 KLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK 457



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 128/279 (45%), Gaps = 17/279 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N LL+ +CK G ++ A  I + +  K V+P++ TY++L              + L+EM +
Sbjct: 359 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 418

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
              AP   TY+  I+  C+   +     +   M   G     P A  Y  ++ A  +  R
Sbjct: 419 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGL---KPNAVVYTTLMTAHAKEGR 475

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   +L  M   G LPDV  Y  ++ G C A ++EEA  +L EM  +   P+  TY  
Sbjct: 476 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 535

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           F+         + A R +  M+  G  P+V  Y  LI  + + G    AF  +  +  R 
Sbjct: 536 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 595

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             QDV TY V+I GL    K+ EA  +  E+  KGL LP
Sbjct: 596 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL-LP 633



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 143/331 (43%), Gaps = 26/331 (7%)

Query: 164 QYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           Q  E++ +K   P+I   N+L+D LCK G ++ A+ +   ++ + + PN  TY  +    
Sbjct: 656 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--STI 267
                     Q LEEM+  G  PD F YN  ++  CK     +A DLF+ M  KG  ST+
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 775

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
           S      +  +I    ++ +++E   LL  MI    +P+  TY  +++  C AG + EA 
Sbjct: 776 S------FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAK 829

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +   EM  +   P   TY   L    +  N  E   L+  M+  G  P   TY ++I  Y
Sbjct: 830 RLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAY 889

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE--EACFLLEEVVNKGLKL 445
              G    A +   E+  +G    V  Y  +I  L  C K E  E   LL E+   G +L
Sbjct: 890 CREGNVMEACKLKDEILVKGMPMSVAAYDALIQAL--CKKEEFFEVLKLLNEIGESGFRL 947

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
                        + G++    ++   M KF
Sbjct: 948 GLPTCSVIARGFQIAGNMDEAAEVLRSMVKF 978



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 23/330 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K  P++     ++ A CK G V  A+ +   +  K   PN  TYN++             
Sbjct: 210 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEA 269

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++    M+  G  PD +TY+  I+ FC  +   EA  +   M   G     P   TY  +
Sbjct: 270 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGL---KPEPITYNAL 326

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I   ++   +E+ F +   M+  G   ++  +  +L G+C AGK+E+A + ++EM  KG 
Sbjct: 327 IDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGV 386

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD  TY+  ++  C  +N   A  L   M +    P+V TY+++I+     G   G   
Sbjct: 387 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 446

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              EM   G   +   Y  ++       +VEE+  +LE +  +G+ LP    D +     
Sbjct: 447 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI-LP----DVFCYNSL 501

Query: 459 VIGDLGAIHKLSDHMRKFYNPVIARRLALN 488
           +IG   A  K  +  R +   ++ RRL  N
Sbjct: 502 IIGFCKA--KRMEEARTYLMEMLERRLRPN 529



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 154/354 (43%), Gaps = 30/354 (8%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV-----------PVDVLLMIL 162
           EP+ YN +ID         + FR+   M+      N +              ++  L I+
Sbjct: 319 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 378

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--GM 219
           ++  EK     +P+    +LL++  C+   +  A E + +  K K+ P   TY+++  G+
Sbjct: 379 QEMMEK---GVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 435

Query: 220 ----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                       L EM+  G  P+   Y T +    K   V E+  + E MR +G     
Sbjct: 436 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL--- 492

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    Y  +I+   +  RMEE  + L  M+     P+  TY   ++G   AG++E A ++
Sbjct: 493 PDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRY 552

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM + G  P++  Y   ++  C   N  EA  ++  ++       VQTY++LI     
Sbjct: 553 FNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 612

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G+   AF  + E+ ++G   +  TY  +I G      V++A  LLEE+  KG+
Sbjct: 613 NGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI 666



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 3/218 (1%)

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            LEEMI+    P++ TY + ID  CKA M+ EA  L+  M+ +      PTAKTY  ++  
Sbjct: 797  LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM---PTAKTYTSLLHG 853

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                  M E  +L   M+  G  PD  TY  +++  C  G V EA K  +E+  KG P  
Sbjct: 854  YHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMS 913

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +  Y+  ++ LC  +   E L+L   + E G    + T +++   +   G  D A E   
Sbjct: 914  VAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLR 973

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             M K G   +  +   ++DG  + +  E++  LL+++ 
Sbjct: 974  SMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 1011


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 151/329 (45%), Gaps = 32/329 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P +++ N LL  L K        ++  +++ + +  +  T NIL            G   
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              +++ G++P+  TYNT I   C    ++EA  LF  M+  G T   P   TY  +I  
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCT---PDVVTYGTLIKG 183

Query: 282 LVQNDRMEECFSLLGHMINS------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG- 334
           L     +     L   M+N        C P+V TY  +++G+C  G+ +EA +  EEM  
Sbjct: 184 LCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKT 243

Query: 335 ---------NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
                    ++G  PD+VT+N  +  LC      EA +L G MIE G  P + TYN LI 
Sbjct: 244 QGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIE 303

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            +  +G+ + A E +  M  +GC  DV +Y V+I+G     KVEEA  L  E++  G + 
Sbjct: 304 GFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRP 363

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
               +DS L  + + G +    KL   M+
Sbjct: 364 NVITYDSLLKGIFLAGKVDDAKKLFSVMK 392



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 138/301 (45%), Gaps = 23/301 (7%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K+   P++     L+  LC  G ++ A  + + + N +                   ++ 
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDI----------------SRYEIN 210

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-------SPTAKTYAIMIVAL 282
             P+  TYN  +D  CK     EA  LFE M+T+G   +        P   T+ ++I  L
Sbjct: 211 CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTL 270

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  ++ E   LLG MI SG +PD+ TY  ++EG C+ G +  A +    M +KG  PD+
Sbjct: 271 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDV 330

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           ++YN  +         +EA++LY  M+ VG  P+V TY+ L+   F  G+ D A + +  
Sbjct: 331 ISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSV 390

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M   G A++  TY + +DGL     + EA  L  E+ +   KL     +  +  L   G 
Sbjct: 391 MKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGK 450

Query: 463 L 463
           L
Sbjct: 451 L 451



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 136/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L++  C  G ++ A  +   + +K  +P+  +YN+L             M+ 
Sbjct: 293 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 352

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+ +G  P+  TY++ +     A  V +A  LF  M+  G    +  + TY I +  
Sbjct: 353 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI---AENSYTYGIFLDG 409

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +ND + E   L   + +S    ++     +++G+C AGK+E A++  E++ N+G+ P+
Sbjct: 410 LCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPN 469

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +   C     D+A  L  +M   GC P + TYN L+  ++E  + +   +  H
Sbjct: 470 VVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLH 529

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-VNKGL 443
            M ++  + D  T  +++D L    K +E   LL    + KG+
Sbjct: 530 RMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGV 572



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 18/236 (7%)

Query: 235 FTYNTAIDT----------FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           FT+++AI +           CK   VT A     F      +  +P+  ++  ++  L +
Sbjct: 23  FTHSSAIPSPNPQIAFFLRHCKTGNVT-ATHALHFFHLMMRSTPTPSLSSFNHLLSGLAK 81

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
                + FSL   M  SG   D  T   +L  +C   ++ E +     +  +GY P+IVT
Sbjct: 82  IKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVT 141

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +K LC      EA RL+ RM ++GC P V TY  LI      G  + A +   EM 
Sbjct: 142 YNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEML 201

Query: 405 KR------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
                    C  +V TY +++DGL    + +EA  L EE+  +G+ +P    D  L
Sbjct: 202 NDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGM-IPNEMLDQGL 256



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 25/175 (14%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
           D L   +K +TE      + EI  LN L+D LCK G ++ A  + +++ N+         
Sbjct: 414 DCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE--------- 464

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                        GH P+  TY   I  FC+   V +A  L + M   G T   P   TY
Sbjct: 465 -------------GHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT---PDIITY 508

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
             ++    +++++EE   LL  M      PD  T   V++ +    K +E    L
Sbjct: 509 NTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 563


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 183 LLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  LC  G   D A+ + + +   + P+  T++ L              +   EMI  G
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            APD  TYN+ ID FCK   + EA  +F+ M +KG     P   TY+I+I +  +  R++
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC---EPDIVTYSILINSYCKAKRVD 402

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L   + + G +P+  TY  ++ G C +GK+  A +  +EM ++G PP +VTY   L
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LCDN   ++AL ++ +M +      +  YN++I       + D A+  +  +  +G  
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 522

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            DV TY VMI GL     + EA  L  ++   G
Sbjct: 523 PDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 139/277 (50%), Gaps = 16/277 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++++D+LCK G  D A ++   ++ K +K +  TY+ L            G + L EMI 
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  T++  ID F K   + EA +L+  M T+G    +P   TY  +I    + + 
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI---APDTITYNSLIDGFCKENC 365

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   +   M++ GC PD+ TY  ++   C A +V++  +   E+ +KG  P+ +TYN 
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C +   + A  L+  M+  G  PSV TY +L+    + GE + A E + +M K  
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               +  Y ++I G+ + SKV++A  L   + +KG+K
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 522



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 16/287 (5%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKP 209
           VFV    LL   + Y E I     P+    N L+D  CK   +  A  +   + +K  +P
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +  TY+IL            GM+   E+   G  P+  TYNT +  FC++  +  A +LF
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 443

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + M ++G     P+  TY I++  L  N  + +   +   M  S     +  Y  ++ GM
Sbjct: 444 QEMVSRGV---PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C A KV++A+     + +KG  PD+VTYN  +  LC   +  EA  L+ +M E GC P  
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            TYN+LI  +        + E   EM   G + D  T  ++ID L D
Sbjct: 561 FTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 607



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 45/315 (14%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTY------------N 215
           +++K +P++  ++ L++ LC  G V  A  +  R V+   +P+  TY            +
Sbjct: 167 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-----STISS- 269
            L +    +M +         Y+  ID+ CK     +A  LF  M  KG      T SS 
Sbjct: 227 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286

Query: 270 --------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
                                     P   T++ +I   V+  ++ E   L   MI  G 
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PD  TY  +++G C    + EA +  + M +KG  PDIVTY+  +   C  K  D+ +R
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 406

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  +   G  P+  TYN L+  + + G+ + A E + EM  RG    V TY +++DGL 
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

Query: 424 DCSKVEEACFLLEEV 438
           D  ++ +A  + E++
Sbjct: 467 DNGELNKALEIFEKM 481



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G   D +T    I+ +C+ + +  A   F  +         P   T++ ++       R+
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFA---FSVLGRAWKLGYEPDTITFSTLVNGFCLEGRV 156

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E  +L+  M+     PD+ T   ++ G+CL G+V EA   ++ M   G+ PD VTY   
Sbjct: 157 SEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV 216

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L  LC + N   AL L+ +M E     SV  Y+++I    + G  D A   ++EM+ +G 
Sbjct: 217 LNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGI 276

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             DV TY  +I GL +  K ++   +L E++ + +
Sbjct: 277 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 7/238 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA--IMI 279
            E MIQ    P    +N      C A   T+  DL      KG  ++      Y   IMI
Sbjct: 58  FESMIQSRPLPTPIDFNR----LCSAVARTKQYDLV-LGFCKGMELNGIEHDMYTMTIMI 112

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +  ++   FS+LG     G  PD  T+  ++ G CL G+V EA   ++ M      
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+VT +  +  LC      EAL L  RM+E G  P   TY  +++   + G    A + 
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + +M++R     V  Y ++ID L      ++A  L  E+  KG+K     + S +  L
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 45/228 (19%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------Q 220
           +P+I   ++L+++ CK   VD    + + + +K + PN  TYN  +LG           +
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
             +EM+  G  P   TY   +D  C    + +A ++FE M+    T+             
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY +MI  L +   + E   L   M   GC PD  
Sbjct: 502 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDF 561

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           TY  ++        +  + + +EEM   G+  D  T    + +L D +
Sbjct: 562 TYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRR 609


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 151/337 (44%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E +++   P I   N L+  LC+ GL +   E + +  ++   P+   Y  +        
Sbjct: 252 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEG 311

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  P+   YNT +   C A    E  +L   M  K   +      
Sbjct: 312 HLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD---V 368

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++    QN  ++    LL  M+  GC+PDV TY  V+ G C  G ++EA   L+ M
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P+ ++Y   LK LC  +   +A  L  +MI+ GC  +  T+N LI+   + G  
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 488

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL    K +EA  LL  +VNKG+      + S 
Sbjct: 489 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 548

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ D+++          YN VI+
Sbjct: 549 ASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS 585



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----------QTL 222
           ++   NL+L+A+C  G VD A  + + + +   +P+  +YN +  G+          + +
Sbjct: 191 DVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELM 250

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EEM++M   P+  T+NT I   C+  +     ++   M   G T   P  + YA +I  +
Sbjct: 251 EEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCT---PDIRMYATIIDGI 307

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   ++    +L  M + G  P+V  Y  +L+G+C A + EE  + L EM +K  P D 
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VT+N  +   C N   D  + L  +M+  GC P V TY  +I+ + + G  D A      
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           M   GC  +  +Y +++ GL    +  +A  L+ +++ +G  L    F++ +
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLI 479



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 16/276 (5%)

Query: 180 LNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
            N+L+D  C+ GLVD   E + + + +   P+  TY  +             +  L+ M 
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  P+  +Y   +   C A    +A DL   M  +G  ++  T  T   +I  L +  
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNT---LINFLCKKG 486

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +E+   LL  M+ +GC PD+ +Y  V++G+  AGK +EA + L  M NKG  P+ + Y+
Sbjct: 487 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 546

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                L      ++ ++++  + +         YN +IS   + GE + A E    M   
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           GC  +  TY ++I GL     V+EA  +L E+ +KG
Sbjct: 607 GCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 23/289 (7%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++ Y+ RN  +F  V  +L  + ++         P+I     ++D +CK G +  A  I
Sbjct: 267 TLISYLCRNG-LFERVHEVLAQMAEH------GCTPDIRMYATIIDGICKEGHLKVAHEI 319

Query: 200 CKRVKN-KVKPNANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             R+ +  +KPN   YN L  G+          + L EM       D+ T+N  +D FC+
Sbjct: 320 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
             +V    +L E M   G     P   TY  +I    +   ++E   LL  M   GC P+
Sbjct: 380 NGLVDRVIELLEQMLVHGCM---PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             +Y  VL+G+C A +  +A   + +M  +G P + +T+N  +  LC     ++A+ L  
Sbjct: 437 TISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLK 496

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           +M+  GC P + +Y+ +I    + G+ D A E  + M  +G + +   Y
Sbjct: 497 QMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 545



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 122/277 (44%), Gaps = 17/277 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N ++   C+ G ++ A  +   V   V PNA TY  +             +  L+EM + 
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPRR 151

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G AP    Y+  ++  C+      A  + E +  +G  +         +++ A+     +
Sbjct: 152 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN---LVLNAICDQGSV 208

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++   LL  + + GC PDV +Y  VL+G+C+A +     + +EEM     PP+IVT+N  
Sbjct: 209 DKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC N   +    +  +M E GC P ++ Y  +I    + G    A E  + M   G 
Sbjct: 269 ISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGL 328

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             +V  Y  ++ GL    + EE   LL E+ +K   L
Sbjct: 329 KPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPL 365



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 3/170 (1%)

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ G C AG++E A +    +     PP+  TY   ++ LC      +AL +   M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             GC P    Y++++      G    A     ++  RGCA DV    ++++ + D   V+
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           +A  LL ++ + G +     +++ L  L +    G + +L + M +   P
Sbjct: 210 KALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 259


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 183/401 (45%), Gaps = 58/401 (14%)

Query: 67  NMEKALDSLGVP----LTTDSVVGVLQRFQFEEK-----IAFRFFMWAGHQDNYAHEPLA 117
           N + ALD L V     L  + +VG+L+   ++ K     +A++FF+W G Q+N+ H    
Sbjct: 95  NTKSALDDLNVTISGLLVREVLVGILRTLSYDNKTRCAKLAYKFFVWFGGQENFRHTANC 154

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           Y+L++ I +    +  +++ +C ++D                       E IK       
Sbjct: 155 YHLLMKIFA----ECGEYKAMCRLID-----------------------EMIKDGYPTTA 187

Query: 178 NALNLLLDALCKCGLVDYAETICKR-VKNKV---KPNANTYN-----ILGMQ-------T 221
              NLL+   C CG    A  + ++ +K+K    +P  ++YN     +LG++        
Sbjct: 188 CTFNLLI---CTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWV 244

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+M++ G +PD  TYN  +  F   R+  +   L+  +        SP   TY I++  
Sbjct: 245 YEQMLEDGFSPDVLTYNIVM--FANFRL-GKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 301

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L   ++     +LL HM   G  P V  +  +++G+  AGK+E    F++EM   G  PD
Sbjct: 302 LATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPD 361

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +         ++A  ++  M E G  P+V TYN +I  +   G+   A     
Sbjct: 362 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLK 421

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           EM+ RGC  +   Y  +++ L +  KV EA  +++++V KG
Sbjct: 422 EMESRGCNPNFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKG 462



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 32/204 (15%)

Query: 141 MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
           +L ++   NK    +++L       T   +V  +P +     L+D L + G ++     C
Sbjct: 298 LLHHLATGNKPLAALNLL-------THMREVGVEPGVIHFTTLVDGLSRAGKLE----AC 346

Query: 201 KRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           K                    ++EM+++G  PD   Y   I  +     + +A ++F+ M
Sbjct: 347 KYF------------------MDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEM 388

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
             KG     P   TY  MI       + +E  SLL  M + GC P+   Y  ++  +  A
Sbjct: 389 TEKGQL---PNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNA 445

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVT 344
           GKV EA++ +++M  KG+   +++
Sbjct: 446 GKVLEAHEIVKDMVEKGHYVHLIS 469



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 6/208 (2%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           TA  Y +++    +    +    L+  MI  G      T+  ++   C  G+   A   +
Sbjct: 151 TANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLI---CTCGEAGLARDVV 207

Query: 331 EEMGNK---GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           E+        Y P   +YN  L  L   K       +Y +M+E G  P V TYN+++   
Sbjct: 208 EQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMFAN 267

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           F LG+ D  +    EM K G + D+ TY +++  L   +K   A  LL  +   G++   
Sbjct: 268 FRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGV 327

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             F + +  LS  G L A     D M K
Sbjct: 328 IHFTTLVDGLSRAGKLEACKYFMDEMVK 355


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P + + N++++ LC+ G + + +  + +  K     +  TYN L             + 
Sbjct: 272 EPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM++ G +P   TY + I + CKA  +  A +  + MR +G     P  +TY  ++ 
Sbjct: 332 MHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLC---PNERTYTTLVD 388

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              Q   M E + +L  MI++G  P V TY  ++ G C+AGK+ +A   LE+M  KG  P
Sbjct: 389 GFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTP 448

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+V+Y+  L   C + + DEALR+  +M+  G  P   TY+ LI  + E      A + +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLF 508

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            EM + G   D  TY  +I+       +++A  L  E+V KG+ LP
Sbjct: 509 DEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGV-LP 553



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 123/259 (47%), Gaps = 4/259 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+Q   +P+ FTYN  I  FC A  +  A   F+ M  KG     P   TY  +I  
Sbjct: 193 FKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCL---PNVVTYNTLIDG 249

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++++ F LL  M   G  P++ +Y  V+ G+C  G+++E    L EM  +GY  D
Sbjct: 250 YCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLD 309

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +K  C   N  +AL ++  M+  G  PSV TY  LI    + G  + A E   
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLD 369

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M  RG   +  TY  ++DG      + EA  +L+E+++ G       +++ +    + G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAG 429

Query: 462 DL-GAIHKLSDHMRKFYNP 479
            +  AI  L D   K   P
Sbjct: 430 KMVDAIAVLEDMKEKGLTP 448



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGL-VDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           P + + N +LDA  +    + +AE + K  ++++V PN  TYNIL             ++
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALR 226

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             + M + G  P+  TYNT ID +CK R + +  +L   M  KG     P   +Y ++I 
Sbjct: 227 FFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKG---LEPNLISYNVVIN 283

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  RM+E   +L  M   G   D  TY  +++G C  G   +A     EM   G  P
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSP 343

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            ++TY   +  +C   N + A     +M   G  P+ +TY  L+  + + G  + A+   
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM   G +  V TY  +I+G     K+ +A  +LE++  KGL
Sbjct: 404 KEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGL 446



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 142/312 (45%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------QT 221
           P +   N L+D  CK   +D    + + +  K ++PN  +YN++  G+            
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFV 297

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM + G++ D  TYNT I  +CK     +A  +   M   G    SP+  TY  +I +
Sbjct: 298 LTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL---SPSVITYTSLIHS 354

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +   M      L  M   G  P+  TY  +++G    G + EAY+ L+EM + G+ P 
Sbjct: 355 MCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPS 414

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +   C      +A+ +   M E G  P V +Y+ ++S +    + D A     
Sbjct: 415 VVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKR 474

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M  +G   D  TY  +I G  +  + +EAC L +E++  GL      + + +    + G
Sbjct: 475 KMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEG 534

Query: 462 DLGAIHKLSDHM 473
           DL    +L + M
Sbjct: 535 DLQKAIQLHNEM 546



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 140/337 (41%), Gaps = 47/337 (13%)

Query: 164 QYTEKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---- 217
           ++ ++++V+   P       L+D   + G ++ A  + K  + N   P+  TYN L    
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGH 425

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +  LE+M + G  PD  +Y+T +  FC++  V EA  +   M  KG     
Sbjct: 426 CIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGI---K 482

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY+ +I    +  R +E   L   M+  G  PD  TY  ++   C+ G +++A + 
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQL 542

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---- 385
             EM  KG  PD+VTY+  +  L       EA RL  ++      PS  TY+ LI     
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSN 602

Query: 386 --------------MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                         M   + E D  FE+  E + +    D   Y VMI G      + +A
Sbjct: 603 IEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHK---PDGTAYNVMIHGHCRGGDIRKA 659

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             L +E+V  G           L  ++VI  +  +HK
Sbjct: 660 YSLYKEMVKSGF---------LLHTVTVIALVKTLHK 687



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 31/285 (10%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P +   N L++  C  G +  A  + + +K K + P+  +Y+ +             ++
Sbjct: 412 SPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALR 471

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M+  G  PD  TY++ I  FC+ R   EA DLF+ M   G     P   TY  +I 
Sbjct: 472 VKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGL---PPDEFTYTALIN 528

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A      +++   L   M+  G LPDV TY  ++ G+    +  EA + L ++  +   P
Sbjct: 529 AYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVP 588

Query: 341 DIVTY-----NC----------FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
             VTY     NC           +K  C      EA +++  M+E    P    YN++I 
Sbjct: 589 SDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIH 648

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            +   G+   A+  + EM K G      T   ++  L    KV E
Sbjct: 649 GHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNE 693



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 1/145 (0%)

Query: 302 GCLPDVSTYKEVLEGMCLAGK-VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           G +P V +Y  VL+    + + +  A    +EM      P++ TYN  ++  C   N D 
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDV 223

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           ALR + RM + GC P+V TYN LI  Y +L + D  FE    M  +G   ++ +Y V+I+
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
           GL    +++E  F+L E+  +G  L
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSL 308



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 104/296 (35%), Gaps = 66/296 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P++ + + +L   C+   VD A  + ++ V   +KP+  TY+ L                
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDL 507

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+++G  PD FTY   I+ +C    + +A  L   M  KG     P   TY+++I  
Sbjct: 508 FDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVL---PDVVTYSVLING 564

Query: 282 LVQNDRMEEC------------------------------FSLLGHMINSGCL------- 304
           L +  R  E                               F  +  +I   C+       
Sbjct: 565 LNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEA 624

Query: 305 -------------PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
                        PD + Y  ++ G C  G + +AY   +EM   G+    VT    +K 
Sbjct: 625 DQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKT 684

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           L      +E   +   ++        +   +L+ +    G  D   +   EM K G
Sbjct: 685 LHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 144/300 (48%), Gaps = 24/300 (8%)

Query: 173 TQPEINALNLLLDALCKCGL--------VDYA-ETICKRVKNKVKPNANTYNIL------ 217
           + P++ + N +L+   K G+        +D A E +   VKN V P+  TYN +      
Sbjct: 197 SPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 256

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  + TL++M   G  P+  TY++ ++  CK    TEA  +F+ M  +G     P 
Sbjct: 257 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL---EPD 313

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  ++    +  R+ E   L   M+  G  PD+ TY  +++G CLAGK++EA K L 
Sbjct: 314 IATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLA 373

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M + G  PDIVTY   +   C     D+AL L+  M+  G  P++ TYN+++   F   
Sbjct: 374 SMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTR 433

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               A E +  + K G   ++ TY +++ GL   +  +EA  + + +    L+L  R F+
Sbjct: 434 RTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 493



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M+ L  M++ G  PD  TYN+ +  +C +    EA    + MR+ G     P   TY+ +
Sbjct: 229 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV---EPNVVTYSSL 285

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L +N R  E   +   M   G  PD++TY+ +L+G C  G+V E+ K  + M   G 
Sbjct: 286 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGV 345

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PDI+TYN  +   C     DEA +L   M+ VG  P + TY  LI+ Y  +   D A  
Sbjct: 346 KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 405

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            + EM   G + ++ TY +++ GLF   +   A  L   +   G +L    ++  L  L
Sbjct: 406 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 464



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 133/303 (43%), Gaps = 16/303 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILGMQTLEE-------- 224
           +P +   + L++ LCK G    A  I   + K  ++P+  TY  L     +E        
Sbjct: 276 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEK 335

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+++G  PD  TYNT ID  C A  + EA  L   M + G     P   TY  +I 
Sbjct: 336 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV---KPDIVTYGTLIN 392

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  RM++  +L   M++SG  P++ TY  +L+G+    +   A +    +   G   
Sbjct: 393 GYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL 452

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TYN  L  LC N   DEALR++  +         +T+N++I    + G  D A + +
Sbjct: 453 ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLF 512

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
                 G   DV TY +M + L +   +EE   L   +   G     R  +S + +L   
Sbjct: 513 AAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQR 572

Query: 461 GDL 463
           GD+
Sbjct: 573 GDI 575



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 13/268 (4%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              +E+++ G     +  N A+    +      A   +  M   G+   +PT  TYAI+I
Sbjct: 41  HVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYAILI 99

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF-LEEMGNKGY 338
               +  R++  F+ LG+++  G   D  T+  +L+G+C   +  +A    L  M   G 
Sbjct: 100 GCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGC 159

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE---VGCWPSVQTYNMLISMYFELG---- 391
            PD+ +YN  LK LCD     EAL L   M +    G  P V +YN +++ +F+ G    
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTK 219

Query: 392 ----EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
                 D A E  + M K G   D  TY  ++ G     + +EA   L+++ + G++   
Sbjct: 220 LTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNV 279

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             + S +  L   G      K+ D M K
Sbjct: 280 VTYSSLMNYLCKNGRSTEARKIFDSMTK 307



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 112/264 (42%), Gaps = 27/264 (10%)

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            KV P  +TY IL            G   L  +++ G   D  T+   +   C  +  ++
Sbjct: 86  GKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSD 145

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI----NSGCLPDVS 308
           A D+     T+   I  P   +Y  ++  L   +R +E   LL HM+      G  PDV 
Sbjct: 146 AMDIVLRRMTELGCI--PDVFSYNNLLKGLCDENRSQEALELL-HMMADDRGGGSPPDVV 202

Query: 309 TYKEVLEGMCLAG--------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +Y  VL G    G         +++A + L  M   G  PD +TYN  L   C +    E
Sbjct: 203 SYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 262

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+    +M   G  P+V TY+ L++   + G    A + +  M KRG   D+ TY  ++ 
Sbjct: 263 AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 322

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           G     +V E+  L + +V  G+K
Sbjct: 323 GHCKEGRVIESEKLFDLMVRIGVK 346



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 119/322 (36%), Gaps = 67/322 (20%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL---- 217
           K +    K   +P+I     LL   CK G V  +E +    V+  VKP+  TYN L    
Sbjct: 300 KIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGC 359

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     + L  M+ +G  PD  TY T I+ +C+   + +A  LF+ M + G    S
Sbjct: 360 CLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV---S 416

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL---------- 319
           P   TY I++  L    R      L   +  SG   ++STY  +L G+C           
Sbjct: 417 PNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRM 476

Query: 320 -------------------------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
                                     G+++EA          G  PD+ TY+   + L +
Sbjct: 477 FQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIE 536

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
             + +E   L+  M E GC    +  N ++                 ++ +RG      T
Sbjct: 537 QGSLEELDDLFLSMEENGCSADSRMLNSIV----------------RKLLQRGDITRAGT 580

Query: 415 YCVMIDGLFDCSKVEEACFLLE 436
           Y  MID      +   A FLLE
Sbjct: 581 YLFMIDEKHFSLEASTASFLLE 602


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 15/323 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y + I+V   P++  ++++++A CK G VD A    K+++N  V+PN  TY+ L      
Sbjct: 214 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVS 273

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L+ M + G + +  TY   I  +CK   + EA  +   M+ + + +  P 
Sbjct: 274 LGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV--PD 331

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            + Y ++I    +  ++++   LL  M+  G   ++     ++ G C  G++ EA   + 
Sbjct: 332 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVIT 391

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M +    PD  +YN  L   C   +  EA  L  +M++ G  P+V TYN L+     +G
Sbjct: 392 RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG 451

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D A + WH M K G A D   Y  ++DGLF     E A  L ++++ +G       F+
Sbjct: 452 AFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFN 511

Query: 452 SYLMQLSVIGDLGAIHKLSDHMR 474
           + +  L  +G +    ++ D M+
Sbjct: 512 TMISGLCKMGKMVEAEEIFDKMK 534



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 16/291 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------- 217
           T  +    +P+  + N LLD  C+ G    A  +C K ++  ++P   TYN L       
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +Q    M++ G APD   Y+T +D   K      A+ L++ +  +G T S  T 
Sbjct: 451 GAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 510

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T   MI  L +  +M E   +   M + GC PD  TY+ +++G C A  V +A+K    
Sbjct: 511 NT---MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   P I  YN  +  L  ++   E   L   M   G  P++ TY  LI  + + G 
Sbjct: 568 MEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D AF ++ EM + G + ++     M+ GL+   +++EA  L++++V+ G 
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGF 678



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 19/282 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPN--------ANTYNILGMQT---- 221
           P I     L+D  CK G++D A  +  +  +N +  N        +  Y +  +      
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++M+  G  PD+  +  +   +   + + ++ D          T   P    Y I I  
Sbjct: 670 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD------ESCKTFLLPNNIVYNIAIAG 723

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  ++++       +   G +PD  TY  ++ G   AG V+EA++  +EM  +G  P+
Sbjct: 724 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTYN  +  LC ++N D A RL+ ++ + G +P+V TYN LI  Y ++G  D AF+   
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 843

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M + G +  V TY  +I+GL     +E +  LL +++  G+
Sbjct: 844 KMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 3/210 (1%)

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           +L+E  +    P+N  YN AI   CK   V +A   F  +  KG     P   TY  +I 
Sbjct: 701 SLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFV---PDNFTYCTLIH 757

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  ++E F L   M+  G +P++ TY  ++ G+C +  V+ A +   ++  KG  P
Sbjct: 758 GYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFP 817

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  +   C   N D A +L  +MIE G  PSV TY+ LI+   + G+ + + +  
Sbjct: 818 NVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLL 877

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
           ++M K G    +  YC ++ G F  S   E
Sbjct: 878 NQMIKAGVDSKLIEYCTLVQGGFKTSNYNE 907



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 20/284 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAET---------------ICKRVKNKVKPNANTYNILGM 219
           P+  A  +L+D  C+ G +D A                 IC  + N        +   G+
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            T   M+     PD+++YNT +D +C+    +EA +L + M  +G     PT  TY  ++
Sbjct: 390 IT--RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGI---EPTVLTYNTLL 444

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +    ++   +   M+  G  PD   Y  +L+G+      E A    +++  +G+ 
Sbjct: 445 KGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFT 504

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
              +T+N  +  LC      EA  ++ +M ++GC P   TY  LI  Y +      AF+ 
Sbjct: 505 KSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKV 564

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              M++   +  ++ Y  +I GLF   ++ E   LL E+  +GL
Sbjct: 565 KGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGL 608



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SPT   + +++   V+    +    +  +M   G +P + +   +L  +   G+   A+ 
Sbjct: 155 SPTV--FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHY 212

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M   G  PD+   +  +   C +   DEA     +M  +G  P++ TY+ LI+ Y 
Sbjct: 213 VYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYV 272

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            LG+ + A      M ++G +++V TY ++I G     K++EA
Sbjct: 273 SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 234 NFTYNTAI-DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           NF ++  I D   +   +   A L  F          P  K+Y  ++  L +    +E  
Sbjct: 63  NFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETR 122

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           + L  ++      D+  +K+   G  +  ++   Y+         + P +  ++  LKV 
Sbjct: 123 AYLNQLV------DLCKFKD--RGNVIWDELVGVYREF------AFSPTV--FDMILKVY 166

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
            +      AL ++  M + G  PS+++ N L++   + GE   A   + +M + G   DV
Sbjct: 167 VEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDV 226

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
               +M++      KV+EA   ++++ N G++     + S +     +GD+ A
Sbjct: 227 FMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEA 279


>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 191/423 (45%), Gaps = 61/423 (14%)

Query: 46  DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEE---------K 96
           D+  D  K+ E +  +   +D    ALD L + ++   V  VL+     +         K
Sbjct: 74  DAKIDAEKVIEILKQDGPGFDTF-LALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAK 132

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           + ++FF+W+G  +NY H   +Y++++ I +    + ++F+ +  +LD M        PV 
Sbjct: 133 LGYKFFIWSGRIENYRHTVNSYHIIMKIFA----ECEEFKAMWRVLDEMTEKG---YPVT 185

Query: 157 V-LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKV---KPNA 211
               MIL                        +C CG    A+ + +R +K+K    +P  
Sbjct: 186 ARTFMIL------------------------ICTCGEAGLAKRVVERFIKSKTFNFRPYK 221

Query: 212 NTYNIL--GMQTLEEMIQMG----------HAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
           ++YN +  G+  +++   +G          H+PD  TYN  + + CK   + +   L + 
Sbjct: 222 HSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDE 281

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M  KG    SP   TY I++  L + D+     +LL HM   G  P+V  +  ++ G+  
Sbjct: 282 MARKGF---SPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSR 338

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           AG ++    F +E+GN G  PD+V Y   +    +    ++A   +  MI  G  P+V T
Sbjct: 339 AGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFT 398

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN +I  +  +G+   A+    EM+ RGC  +   Y  ++  L +  K+ EA  +++++V
Sbjct: 399 YNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKQMV 458

Query: 440 NKG 442
             G
Sbjct: 459 ENG 461



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + L+EM + G+     T+   I T  +A +     +   F+++K      P   +Y  ++
Sbjct: 172 RVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVE--RFIKSKTFNFR-PYKHSYNAIL 228

Query: 280 VALVQNDRMEECFSLLGHMINSGCL----PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             LV    + + + L+G + +   L    PD+ TY  +L   C  GK+++ ++ L+EM  
Sbjct: 229 HGLV----IVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMAR 284

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG+ PD  TYN  L VL        AL L   M EVG  P+V  +  LI+     G  D 
Sbjct: 285 KGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDA 344

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
               + E+   GC  DV  Y VMI    +  + E+A    +E++ KG +LP
Sbjct: 345 CKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG-QLP 394


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILG------------MQT 221
           P +   N+LLD  C+ G ++ A    +  V+   +P+ +TY IL              + 
Sbjct: 405 PSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREF 464

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  PD F YNT I         +EA  L E M ++G  ISS T  TY I +  
Sbjct: 465 FDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRG--ISSDTV-TYNIFLDG 521

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++  +++ + L   M++ G  PD  TY  ++   C  G++ EA    + M   G PP 
Sbjct: 522 LCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPS 581

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTY  F+   C   N   A   + +M+E G  P+  TYN+LI     +G  + A++ +H
Sbjct: 582 AVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFH 641

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM +RG + +  TY ++IDG       EEA  L  E+   G+
Sbjct: 642 EMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGI 683



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 24/309 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           Y E +++  +P I   N LLD+  + G VD A  + + ++   +P               
Sbjct: 219 YAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREME--ARPG-------------- 262

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
               G  P + TYN  I+   +   + +AA L + MR         +A T+  +I     
Sbjct: 263 ----GCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMS----KKASAFTFNPLITGYFA 314

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              +E+  +L   M N G +P V TY  ++ GM  +G VE A     EM   G  PD++T
Sbjct: 315 RGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLIT 374

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +   C   N  EAL L+G +   G  PSV TYN+L+  Y  LG+ + A     EM 
Sbjct: 375 YNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMV 434

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
           ++GC  DV TY ++++G      +       +E+++KGL+     +++ +    ++G   
Sbjct: 435 EQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTS 494

Query: 465 AIHKLSDHM 473
              +L++ M
Sbjct: 495 EAFQLTEVM 503



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 123/276 (44%), Gaps = 15/276 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLE-------EMIQM 228
           N++++ L + G ++ A  +  R++   K +A T+N L        ++E       EM   
Sbjct: 272 NVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENE 331

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P   TYNT I    ++  V  A   F  MR  G     P   TY  +I    +   +
Sbjct: 332 GIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLL---PDLITYNSLINGYCKAGNL 388

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E   L G +  +G  P V TY  +L+G C  G +EEA +F +EM  +G  PD+ TY   
Sbjct: 389 KEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTIL 448

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +      +N       +  M+  G  P    YN  IS    LG    AF+    M  RG 
Sbjct: 449 MNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGI 508

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + D  TY + +DGL     +++A  L  ++V+ GL+
Sbjct: 509 SSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQ 544



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 126/286 (44%), Gaps = 17/286 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYN-------ILG 218
           E ++   QP+++   +L++   K   L    E   + +   ++P+   YN       ILG
Sbjct: 432 EMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILG 491

Query: 219 -----MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 Q  E MI  G + D  TYN  +D  CK+  + +A  L+  M + G     P   
Sbjct: 492 STSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGL---QPDCI 548

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I A  +  R+ E   +   M+ SG  P   TY   +   C  G +  AY + ++M
Sbjct: 549 TYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKM 608

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P+ VTYN  +  LC     + A + +  M+E G  P+  TY +LI    + G  
Sbjct: 609 LEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNW 668

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           + A   + EM + G   D  T+  +  G FD  + + A   +E VV
Sbjct: 669 EEAIRLYSEMHQHGIHPDHCTHNALFKG-FDEGQSKHAIQYMENVV 713



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 127/293 (43%), Gaps = 16/293 (5%)

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM- 219
           Q  +++++  +      N L+      G V+ A  +   ++N+ + P   TYN  I GM 
Sbjct: 289 QLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMF 348

Query: 220 ---------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                        EM  MG  PD  TYN+ I+ +CKA  + EA  LF  ++  G    +P
Sbjct: 349 RSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGL---AP 405

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           +  TY I++    +   +EE       M+  GC PDVSTY  ++ G      +    +F 
Sbjct: 406 SVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFF 465

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           +EM +KG  PD   YN  +       +  EA +L   MI  G      TYN+ +    + 
Sbjct: 466 DEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKS 525

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           G    A+  W +M   G   D  TY  +I    +  ++ EA  + + ++  GL
Sbjct: 526 GNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGL 578



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P  K   +++ AL    R ++  S+   M+  G  P + TY  +L+     G+V++A K 
Sbjct: 194 PFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKL 253

Query: 330 LEEMGNK--GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           L EM  +  G  P  VTYN  +  L      ++A +L  RM  +    S  T+N LI+ Y
Sbjct: 254 LREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTFNPLITGY 312

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           F  G  + A     EM+  G    V TY  +I G+F    VE A     E+   GL
Sbjct: 313 FARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGL 368



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +CLA           EM + G PP I   N  L+ L D    D+   +Y  M+++G  PS
Sbjct: 179 LCLAA--------FREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPS 230

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           + TYN L+  +F  G  D A +   EM+ R  GC     TY V+I+GL    ++E+A  L
Sbjct: 231 IVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQL 290

Query: 435 LEEV 438
           ++ +
Sbjct: 291 VDRM 294



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 5/156 (3%)

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
           C +    M + G  P +     VL  +    + ++      EM   G  P IVTYN  L 
Sbjct: 180 CLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLD 239

Query: 351 VLCDNKNGDEALRLYGRMIEV---GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
                   D+A +L  R +E    GC PS  TYN++I+     GE + A +    M    
Sbjct: 240 SFFREGRVDQAAKLL-REMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSK 298

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            A    T+  +I G F    VE+A  L  E+ N+G+
Sbjct: 299 KASAF-TFNPLITGYFARGSVEKAGALQLEMENEGI 333


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + + I   ++P +   N+++D +CK G ++ A  + + +K + + P+  TYN +      
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +   EEM  M   PD  TYNT I+ FCK   + +  + F  M+  G     P 
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGL---KPN 237

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y+ ++ A  + D M++       M   G +P+  TY  +++  C  G + +A++  +
Sbjct: 238 VVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLAD 297

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM   G   ++VTY   +  LCD +   EA  L+G+M+  G  P++ +Y  LI  + +  
Sbjct: 298 EMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAK 357

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             D A E   EM  RG   D+  Y   I  L    K+E A  ++ E+  KG+K
Sbjct: 358 NMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIK 410



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 139/343 (40%), Gaps = 62/343 (18%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
           V +  D+    L+ +++  + +  P+  + N LL    + G  D                
Sbjct: 72  VLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTD---------------- 115

Query: 211 ANTYNILGMQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                  GM+   ++MI  G  P  FTYN  ID  CK   +  A+ LFE M+ +G     
Sbjct: 116 -------GMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLI--- 165

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  MI    +  R+++       M +  C PDV TY  ++   C  GK+ +  +F
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEF 225

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM   G  P++V+Y+  +   C      +AL+ Y  M  +G  P+  TY  L+  Y +
Sbjct: 226 FREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCK 285

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA------------------ 431
           +G    AF    EM + G   +V TY  +IDGL D  +++EA                  
Sbjct: 286 IGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLAS 345

Query: 432 -----------------CFLLEEVVNKGLKLPYRKFDSYLMQL 457
                              LL+E+  +G+K     + +++  L
Sbjct: 346 YTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSL 388



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 117/486 (24%), Positives = 200/486 (41%), Gaps = 83/486 (17%)

Query: 81  TDSVVGVLQRFQFEEKIAF--RFF---MWAGHQDNYAHEPLAYNLMIDIL--------SS 127
           T S  G+L +F    K     RFF   + AG +         YN+MID +        +S
Sbjct: 98  TRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTV----FTYNIMIDCMCKEGDIEAAS 153

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLD 185
             ++  +FR +  + D +  N+ +  +  V  L   +  + E   +  +P++   N L++
Sbjct: 154 GLFEEMKFRGL--IPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLIN 211

Query: 186 ALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAP 232
             CK G +       + +K   +KPN  +Y+ L             ++   +M ++G  P
Sbjct: 212 CFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVP 271

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           +  TY + +D +CK   +++A  L + M   G   +     TY  +I  L   +R++E  
Sbjct: 272 NEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWN---VVTYTALIDGLCDVERIKEAE 328

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            L G M+ +G +P++++Y  ++ G   A  ++ A + L+EM  +G  PD++ Y  F+  L
Sbjct: 329 ELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSL 388

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C  +  + A  +   M E G   +   Y  L+  YF+   P        EM +       
Sbjct: 389 CGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTA 448

Query: 413 DTYCV------------------------------------MIDGLFDCSKVEEACFLLE 436
            T+CV                                    MIDGL    +VE A  L E
Sbjct: 449 VTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFE 508

Query: 437 EVVNKGLKLPYRK-----FDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKR 491
           ++  KGL +P R       D  L Q +V+  L     L D M +      AR   L Q  
Sbjct: 509 QMAQKGL-VPDRTAYTSLIDGKLKQGNVVQALA----LRDKMAEIGVESGARFGDLCQNT 563

Query: 492 VRISLR 497
           +++SLR
Sbjct: 564 IKLSLR 569



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 1/190 (0%)

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           D+F+ + +    +  P    +  +   L++ D  EE       M      P   +   +L
Sbjct: 47  DVFDVLWST-RNVCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLL 105

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                 GK +   +F ++M   G  P + TYN  +  +C   + + A  L+  M   G  
Sbjct: 106 HKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLI 165

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P   TYN +I  Y ++G  D     + EM    C  DV TY  +I+      K+ +    
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEF 225

Query: 435 LEEVVNKGLK 444
             E+   GLK
Sbjct: 226 FREMKQSGLK 235


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 128/267 (47%), Gaps = 16/267 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL---------- 217
           +K+  QP+   LN L+  LC  G V  +     K V    + N  +Y  L          
Sbjct: 127 LKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGET 186

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  +      PD   Y+T ID  CK ++V +A D F  M  +G     P   TY
Sbjct: 187 RCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIF---PNVITY 243

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I       ++   FSLL  MI     P+V TY  +++ +C  GKV+EA K L EM +
Sbjct: 244 STLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHH 303

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG P D+VTYN  L  LC ++N D+A  L+ +M + G  P+  TY  LI    + G    
Sbjct: 304 KGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKN 363

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGL 422
           A + +  +  +GC  DV TY VMI GL
Sbjct: 364 AQKLFQHLLVKGCCIDVRTYNVMISGL 390



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 16/274 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           LL+ LCK G    A  + + ++++  +P+   Y+ +                  EM   G
Sbjct: 176 LLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARG 235

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY+T I  FC A  +  A  L   M  K     +P   TY I+I AL +  +++
Sbjct: 236 IFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNI---NPNVYTYNILIDALCKEGKVK 292

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   LL  M + G   DV TY  VL+G+C +  +++A     +M   G  P+  TY   +
Sbjct: 293 EAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALI 352

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC       A +L+  ++  GC   V+TYN++IS   + G  D A     +M+  GC 
Sbjct: 353 DGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCI 412

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +  T+ ++I  LF+  + ++A  LL  ++ KGL
Sbjct: 413 PNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 140/325 (43%), Gaps = 16/325 (4%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           + Q+   + V+  P I     +L  L K      A ++ ++++ K ++PN  T NIL   
Sbjct: 50  VSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINC 109

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L +++++G+ PD  T NT +   C    V  +    + +  +G  ++
Sbjct: 110 FCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMN 169

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
             +   Y  ++  L +         LL  + +    PDV  Y  +++G+C    V +AY 
Sbjct: 170 QVS---YGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYD 226

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           F  EM  +G  P+++TY+  +   C       A  L   MI     P+V TYN+LI    
Sbjct: 227 FFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALC 286

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G+   A +   EM  +G   DV TY  ++DGL     +++A  L  ++   G++    
Sbjct: 287 KEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKY 346

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHM 473
            + + +  L   G L    KL  H+
Sbjct: 347 TYTALIDGLCKGGRLKNAQKLFQHL 371



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 38/282 (13%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           H P    +   +    K +    A  L   M  KG     P   T  I+I       +M 
Sbjct: 61  HTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGI---EPNLVTLNILINCFCHLGQMA 117

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP---------- 339
             FS+LG ++  G  PD  T   +++G+CL G+V+ +  F +++  +G+           
Sbjct: 118 FSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLL 177

Query: 340 -------------------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                                    PD+V Y+  +  LC +K  ++A   +  M   G +
Sbjct: 178 NGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIF 237

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+V TY+ LI  +   G+  GAF   +EM  +    +V TY ++ID L    KV+EA  L
Sbjct: 238 PNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKL 297

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           L E+ +KG       ++S L  L    +L     L   M+K+
Sbjct: 298 LAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKW 339


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 3/246 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            M+ L+EM   G  PD  TYN  I+  CK   + EA      M + G     P   T+ I
Sbjct: 101 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC---QPNVITHNI 157

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ ++    R  +   LL  M+  GC P V T+  ++  +C  G +  A   LE+M   G
Sbjct: 158 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 217

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ ++YN  L   C  K  D A+     M+  GC+P + TYN L++   + G+ D A 
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 277

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           E  +++  +GC+  + TY  +IDGL    K E A  LL+E+  KGLK     + S +  L
Sbjct: 278 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 458 SVIGDL 463
           S  G +
Sbjct: 338 SREGKV 343



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           QP +   N++L ++C  G  +D  + +   ++    P+  T+NIL             + 
Sbjct: 149 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID 208

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M   G  P++ +YN  +  FCK + +  A +  + M ++G     P   TY  ++ 
Sbjct: 209 ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY---PDIVTYNTLLT 265

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ +++    +L  + + GC P + TY  V++G+   GK E A K L+EM  KG  P
Sbjct: 266 ALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKP 325

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  +  L      DEA++ +  +  +G  P+  TYN ++    +  + D A +  
Sbjct: 326 DIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFL 385

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M  + C     TY ++I+G+      +EA  LL E+ ++GL
Sbjct: 386 AYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 16/295 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTL 222
            ++  +  +   CK   V  A  +   ++NK  KP+  TYN+L             ++ L
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             M   G  P+  T+N  + + C      +A  L   M  KG    SP+  T+ I+I  L
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGC---SPSVVTFNILINFL 197

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   +     +L  M   GC P+  +Y  +L G C   K++ A ++L+ M ++G  PDI
Sbjct: 198 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 257

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  L  LC +   D A+ +  ++   GC P + TYN +I    ++G+ + A +   E
Sbjct: 258 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 317

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           M ++G   D+ TY  ++ GL    KV+EA     ++   G++     ++S ++ L
Sbjct: 318 MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 372



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GM 219
           ++P++   N+L++ +CK G +D A      + +   +PN  T+NI+              
Sbjct: 113 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAE 172

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + L +M++ G +P   T+N  I+  C+  ++  A D+ E M   G T   P + +Y  ++
Sbjct: 173 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCT---PNSLSYNPLL 229

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +  +M+     L  M++ GC PD+ TY  +L  +C  GKV+ A + L ++ +KG  
Sbjct: 230 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 289

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P ++TYN  +  L      + A++L   M   G  P + TY+ L+S     G+ D A + 
Sbjct: 290 PVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF 349

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +H+++  G   +  TY  ++ GL    + + A   L  +++K  K
Sbjct: 350 FHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCK 394


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 136/285 (47%), Gaps = 20/285 (7%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGM------------ 219
           TQP  N L   + A  + G +  A  + + +     +P+  TYN+L M            
Sbjct: 277 TQPTYNTL---VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAF 333

Query: 220 QTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  +EM ++G A PD  TYNT +D   K R  ++A  L E MR KG     PT  T+ I+
Sbjct: 334 RLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGV---KPTLVTHNIV 390

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           + +L +  ++EE    L  +   G  PDV TY  +++  C AG V +A+  ++EM  KG 
Sbjct: 391 VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGL 450

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D  T N  L  LC  K  ++A  L     + G  P   +Y  +++ YF+   P+ A  
Sbjct: 451 KMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALR 510

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            W +M +R     + TY  +I GL    +++EA   L E V KGL
Sbjct: 511 LWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGL 555



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 147/300 (49%), Gaps = 19/300 (6%)

Query: 174 QPEINALNLLLDALCKC-GLVDYAETICKR--VKNKVKPNANTYNIL------------G 218
           +P + A N +L AL +    +  A     R  ++ ++ PN  T+N+L             
Sbjct: 168 RPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADA 227

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           + TL  M   G +PD  TYNT ++  C+  M+ EA  L   M+  G    +PT  TY  +
Sbjct: 228 LATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG---IAPTQPTYNTL 284

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           + A  +   +++   ++  M   G  PD+ TY  +  G+C AGKV+EA++  +EM   G 
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGT 344

Query: 339 P-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+VTYN  +      +   +ALRL   M + G  P++ T+N+++    + G+ + A 
Sbjct: 345 ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEAL 404

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               ++ + G A DV TY  +ID       V +A  L++E+V KGLK+     ++ L  L
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNL 464



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 136/281 (48%), Gaps = 16/281 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-----ETICKRVK-NKVKPNANTYNILGM---QTLEEM 225
           P++   N L+DA CK G V  A     E + K +K +    N   YN+  M   +  EE+
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 226 I----QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +    Q G  PD  +Y T +  + K      A  L++ M  +      P+  TY  +I  
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLI---PSISTYNTLIKG 533

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + +R++E    L   +  G +PD +TY  ++   C  G +E A++F  +M    + PD
Sbjct: 534 LCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD 593

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VT N  +  LC +   D+AL+L+   +E G    V TYN LI    ++G+ D A   + 
Sbjct: 594 VVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFD 653

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +M+ +G   D  TY V++  L +  + EEA  +L ++ + G
Sbjct: 654 DMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 149/319 (46%), Gaps = 17/319 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L+DA  K      A  + + +++K VKP   T+NI+             +  
Sbjct: 347 PDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGK 406

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE++ + G APD  TYNT ID +CKA  V +A  L + M  KG  + + T  T   ++  
Sbjct: 407 LEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNT---VLYN 463

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R E+   LL      G +PD  +Y  V+         E A +  ++M  +   P 
Sbjct: 464 LCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPS 523

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I TYN  +K LC  +   EA+      +E G  P   TYN++I  Y + G+ + AF   +
Sbjct: 524 ISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHN 583

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M +     DV T   +++GL    K+++A  L E  V KG K+    +++ +  +  +G
Sbjct: 584 KMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVG 643

Query: 462 DLG-AIHKLSDHMRKFYNP 479
           D+  A+H   D   K   P
Sbjct: 644 DVDTALHFFDDMEVKGLQP 662



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 39/264 (14%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++  ++MI+    P   TYNT I   C+   + EA D       KG     P   TY I
Sbjct: 508 ALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLV---PDETTYNI 564

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I A  +   +E  F     M+ +   PDV T   ++ G+CL GK+++A K  E    KG
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              D++TYN  ++ +C   + D AL  +  M   G  P   TYN+++S   E G  + A 
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAH 684

Query: 398 ETWHEMDKRG-------C---------------------------AQD--VDTYCVMIDG 421
              H++   G       C                           AQD  ++TY   ++G
Sbjct: 685 NMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNG 744

Query: 422 LFDCSKVEEACFLLEEVVNKGLKL 445
           L    +++EA  +L+E++ KG+ +
Sbjct: 745 LCTGGQLKEAKAVLDEMMQKGMPV 768



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 88/215 (40%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P +   + A+  + + R+   AA L   +R +     S  A    +  ++   +   +  
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +   +I     P+  T+  ++   C  G + +A   L  M   G  PD VTYN  L  
Sbjct: 193 LDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNA 252

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C      EA  L  RM   G  P+  TYN L+S +  LG    A +    M   G   D
Sbjct: 253 HCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPD 312

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           + TY V+  GL    KV+EA  L +E+   G  LP
Sbjct: 313 LRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALP 347



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 101/240 (42%), Gaps = 55/240 (22%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL--- 217
           L ++ EK  V   P+    N+++ A CK G ++ A     K V+N  KP+  T N L   
Sbjct: 547 LNEFVEKGLV---PDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNG 603

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     ++  E  ++ G   D  TYNT I + CK   V  A   F+ M  KG    
Sbjct: 604 LCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGL--- 660

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL------------------------ 304
            P A TY +++ AL +  R EE  ++L  + +SG L                        
Sbjct: 661 QPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEG 720

Query: 305 -PD-----------VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            P+           + TY E L G+C  G+++EA   L+EM  KG P D  TY   ++ L
Sbjct: 721 KPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGL 780



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 52/137 (37%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+  T+N  +   C      +AL     M   G  P   TYN L++ +   G    A   
Sbjct: 206 PNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 265

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
              M + G A    TY  ++        +++A  ++E +   G +   R ++   M L  
Sbjct: 266 LARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQ 325

Query: 460 IGDLGAIHKLSDHMRKF 476
            G +    +L D M + 
Sbjct: 326 AGKVDEAFRLKDEMERL 342


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 17/286 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P + + N++++ LC+ G +     +   +  +    +  TYN L             + 
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM++ G  P   TY + I + CKA  +  A +  + MR +G     P  +TY  ++ 
Sbjct: 332 MHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC---PNERTYTTLVD 388

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              Q   M E + +L  M ++G  P V TY  ++ G C+ GK+E+A   LE+M  KG  P
Sbjct: 389 GFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSP 448

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+V+Y+  L   C + + DEALR+   M+E G  P   TY+ LI  + E      A + +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY 508

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            EM + G   D  TY  +I+       +E+A  L  E+V KG+ LP
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV-LP 553



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 130/272 (47%), Gaps = 24/272 (8%)

Query: 181 NLLLDALCKCG-----LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           N L+   CK G     LV +AE +    ++ + P+  TY  L             M+ L+
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEML----RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M   G  P+  TY T +D F +   + EA  +   M   G    SP+  TY  +I    
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF---SPSVVTYNALINGHC 426

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              +ME+  ++L  M   G  PDV +Y  VL G C +  V+EA +   EM  KG  PD +
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  ++  C+ +   EA  LY  M+ VG  P   TY  LI+ Y   G+ + A +  +EM
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            ++G   DV TY V+I+GL   S+  EA  LL
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 4/259 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM++   +P+ FTYN  I  FC A  +  A  LF+ M TKG     P   TY  +I  
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCL---PNVVTYNTLIDG 249

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++++ F LL  M   G  P++ +Y  V+ G+C  G+++E    L EM  +GY  D
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +K  C   N  +AL ++  M+  G  PSV TY  LI    + G  + A E   
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M  RG   +  TY  ++DG      + EA  +L E+ + G       +++ +    V G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429

Query: 462 DL-GAIHKLSDHMRKFYNP 479
            +  AI  L D   K  +P
Sbjct: 430 KMEDAIAVLEDMKEKGLSP 448



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 133/283 (46%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGL-VDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           P + + N +LDA  +    + +AE + K  ++++V PN  TYNIL             + 
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++M   G  P+  TYNT ID +CK R + +   L   M  KG     P   +Y ++I 
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG---LEPNLISYNVVIN 283

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  RM+E   +L  M   G   D  TY  +++G C  G   +A     EM   G  P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            ++TY   +  +C   N + A+    +M   G  P+ +TY  L+  + + G  + A+   
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM+  G +  V TY  +I+G     K+E+A  +LE++  KGL
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 143/312 (45%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------QT 221
           P +   N L+D  CK   +D    + + +  K ++PN  +YN++  G+            
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV 297

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM + G++ D  TYNT I  +CK     +A  +   M   G T   P+  TY  +I +
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT---PSVITYTSLIHS 354

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +   M      L  M   G  P+  TY  +++G    G + EAY+ L EM + G+ P 
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +   C     ++A+ +   M E G  P V +Y+ ++S +    + D A     
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM ++G   D  TY  +I G  +  + +EAC L EE++  GL      + + +    + G
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534

Query: 462 DLGAIHKLSDHM 473
           DL    +L + M
Sbjct: 535 DLEKALQLHNEM 546



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 141/337 (41%), Gaps = 47/337 (13%)

Query: 164 QYTEKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---- 217
           ++ ++++V+   P       L+D   + G ++ A  + + +  N   P+  TYN L    
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +  LE+M + G +PD  +Y+T +  FC++  V EA  +   M  KG     
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI---K 482

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY+ +I    +  R +E   L   M+  G  PD  TY  ++   C+ G +E+A + 
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---- 385
             EM  KG  PD+VTY+  +  L       EA RL  ++      PS  TY+ LI     
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSN 602

Query: 386 --------------MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                         M   + E D  FE+   M  +    D   Y +MI G      + +A
Sbjct: 603 IEFKSVVSLIKGFCMKGMMTEADQVFES---MLGKNHKPDGTAYNIMIHGHCRAGDIRKA 659

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             L +E+V  G           L  ++VI  + A+HK
Sbjct: 660 YTLYKEMVKSGF---------LLHTVTVIALVKALHK 687



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 1/176 (0%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK-VEEAYKF 329
           T+  + +++ +  +   +++  S++      G +P V +Y  VL+    + + +  A   
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            +EM      P++ TYN  ++  C   N D AL L+ +M   GC P+V TYN LI  Y +
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           L + D  F+    M  +G   ++ +Y V+I+GL    +++E  F+L E+  +G  L
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL 308


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 134/274 (48%), Gaps = 13/274 (4%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            PE++    L+  +C+  LV Y   +    K+ +  +A     LG+  LE MI+ G +PD
Sbjct: 458 SPEVD---FLMVQVCRPTLVTYNTLVTGLSKSGMVRDA-----LGL--LEFMIESGLSPD 507

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             T+N+ +D  CK + + +A ++F+    +G     P   TY+ +I  L +  +M+E   
Sbjct: 508 VITFNSVLDGLCKEQRILDAHNVFKRALERGC---RPNVVTYSTLIDGLSKMAKMDEALQ 564

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  M+  GC  +  TY  V++G+   G++E+A   L +M + G  PD VTYN  +    
Sbjct: 565 LLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF 624

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             +   EA+ L   M+E G  PSV TY  L       G  D A E    M  RGCA +  
Sbjct: 625 KRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAI 684

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           TY  ++DGL    +V EA    E++    +  P+
Sbjct: 685 TYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 718



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 17/263 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           ++D L K G ++ A  + +++++    P+A TYN L             +  L EM++ G
Sbjct: 584 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG 643

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P   TY T     C++    EA ++ ++M  +G    +P A TY+ ++  L +  R+ 
Sbjct: 644 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGC---APNAITYSSIVDGLCKAGRVT 700

Query: 290 ECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E       M     + P V  Y  +++G+C AG+++EAY+FLE M   G  PD+VT++  
Sbjct: 701 EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSIL 760

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LCD    D  L L+  M E GC   +  YN +I+ Y   GE   A+    EM   G 
Sbjct: 761 INGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGI 820

Query: 409 AQDVDTYCVMIDGLFDCSKVEEA 431
           A++  T+ ++I  L    +++EA
Sbjct: 821 AKNTVTHGIVIKALCGNDRIDEA 843



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 19/321 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           I+    P++   N +LD LCK   +  A  + KR ++   +PN  TY+ L          
Sbjct: 500 IESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKM 559

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +Q L +M+++G   +  TY+T +D   K   + +A  +   MR  G     P A TY
Sbjct: 560 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCL---PDAVTY 616

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I    +  R+ E   LL  M+ +G  P V TY  +  G+C +G+ +EA + L+ M  
Sbjct: 617 NTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA 676

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI--EVGCWPSVQTYNMLISMYFELGEP 393
           +G  P+ +TY+  +  LC      EAL  + +M   EV   P V  Y+ LI    + G  
Sbjct: 677 RGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV-VAPHVIAYSALIDGLCKAGRI 735

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A+E    M + G   DV T+ ++I+GL D  +++    L   +  +G K     +++ 
Sbjct: 736 DEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAM 795

Query: 454 LMQLSVIGDLGAIHKLSDHMR 474
           +    + G+  A + L + M+
Sbjct: 796 INAYCLKGEFSAAYALLEEMK 816



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 25/283 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           N+L++ LCK G V  A T  ++                       IQ G  P   TY+T 
Sbjct: 5   NVLINGLCKAGRVCDAFTAFRKA----------------------IQFGFRPTVVTYSTV 42

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ID  C+   V +   L E M  +G    +P A TY  ++ AL+   R +E FSLL  M  
Sbjct: 43  IDGLCRDNEVDKGCKLLEEMAGRGC---APNAVTYNTLVNALLGQGRAKEAFSLLERMAA 99

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +GC P++ T+  +++G+C  G++E A++ ++EM ++G+ PD+  +   L  LC+    DE
Sbjct: 100 NGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDE 159

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A   + +++ +G  P   TYN ++   ++ G  + A      + +   +  V T+ + +D
Sbjct: 160 AWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVD 219

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           GL     +  A    + +   G+      +D+ +  L   G L
Sbjct: 220 GLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKL 262



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 131/296 (44%), Gaps = 33/296 (11%)

Query: 181 NLLLDALCKCGLVD--YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMI 226
           N+LL  LCK   +   Y      R      PN  T++ L              +  E M+
Sbjct: 349 NILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMV 408

Query: 227 QM-GHAPDNFTYNTAIDTFCKARMVTEAADLFEFM-----RTKGS-------------TI 267
            + G +P+ FTY   ++  CKA         FE M     R+  S              +
Sbjct: 409 AVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQV 468

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             PT  TY  ++  L ++  + +   LL  MI SG  PDV T+  VL+G+C   ++ +A+
Sbjct: 469 CRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAH 528

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              +    +G  P++VTY+  +  L      DEAL+L  +M+E+GC  +  TY+ ++   
Sbjct: 529 NVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGL 588

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++G  + A     +M   GC  D  TY  +IDG F   ++ EA  LL E++  G 
Sbjct: 589 LKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF 644



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 165/418 (39%), Gaps = 91/418 (21%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP--VDVLLMILKQYTEKIKVKT 173
           + Y+ +ID LS      +  +L+  M++   R N V     VD LL + +     + ++ 
Sbjct: 544 VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 603

Query: 174 Q------PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------- 217
                  P+    N L+D   K   +  A  + +  ++    P+  TY  L         
Sbjct: 604 MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR 663

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               ++ L+ M   G AP+  TY++ +D  CKA  VTEA   FE M      + +P    
Sbjct: 664 FDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMAR--DEVVAPHVIA 721

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE---------- 324
           Y+ +I  L +  R++E +  L  MI +G +PDV T+  ++ G+C AG+++          
Sbjct: 722 YSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMA 781

Query: 325 -------------------------EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
                                     AY  LEEM   G   + VT+   +K LC N   D
Sbjct: 782 ERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRID 841

Query: 360 E---------------------------------ALRLYGRMIEVGCWPSVQTYNMLISM 386
           E                                 AL L   M+  G  P    Y  ++  
Sbjct: 842 EAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDG 901

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            F+ G P+ A +   EM  RG + D+ TY +MI GL    ++  AC   EE++ K LK
Sbjct: 902 LFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLK 959



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TYN  I+  CKA  V +A   F   R        PT  TY+ +I  L +++ +++   LL
Sbjct: 3   TYNVLINGLCKAGRVCDA---FTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLL 59

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M   GC P+  TY  ++  +   G+ +EA+  LE M   G PP+++T+   +K LC  
Sbjct: 60  EEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKE 119

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              + A R+   M++ G  P V+ + +L+    ELG  D A+  + ++   G   D  TY
Sbjct: 120 GEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTY 179

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             M+DGL+   ++E A  +L+ +           F   +  LS  G+L   ++  D M
Sbjct: 180 NTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 130/313 (41%), Gaps = 52/313 (16%)

Query: 175  PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
            P + A + L+D LCK G +D A    +R ++    P+  T++IL            G++ 
Sbjct: 717  PHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLEL 776

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
               M + G   D + YN  I+ +C     + A  L E M+T G  I+  T  T+ I+I A
Sbjct: 777  FCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHG--IAKNTV-THGIVIKA 833

Query: 282  LVQNDRMEECFS---------------------------------LLGHMINSGCLPDVS 308
            L  NDR++E  S                                 LL  M+  G  PD  
Sbjct: 834  LCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDAC 893

Query: 309  TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
             Y  V++G+  AG  E A K L+EM ++G+ PD+ TY   +  L   K    A   +  M
Sbjct: 894  NYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEM 953

Query: 369  IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            +     P    Y+ LI  + +  + D A   W  +   G    +  Y  M+D L      
Sbjct: 954  LRKNLKPDAIVYSSLIDAFCKADKVDDA---WKLLRSSGIEPTITMYSTMVDSLCKNRGT 1010

Query: 429  EEACFLLEEVVNK 441
            ++A  ++ E+ +K
Sbjct: 1011 DKALEVIREMKSK 1023



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 142/328 (43%), Gaps = 42/328 (12%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL- 217
           M+L+   E     + P +    + +D L K G L    E      +  V PN  TY+ L 
Sbjct: 197 MVLQLLAESF---SSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALI 253

Query: 218 -GMQTLEEM-IQMGHAPDN------FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
            G+    ++ I +G   D       F +++ +   C+A  + EA  L + M         
Sbjct: 254 DGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPC------V 307

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    +  ++  L Q  R++E F L   M  SGC  DV TY  +L+G+C   ++ EAY+ 
Sbjct: 308 PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRH 367

Query: 330 LEEMG-NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMY 387
           +E M   +G  P++VT++  ++ LC+    ++A  +Y RM+ V G  P+  TY  L+   
Sbjct: 368 VELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGL 427

Query: 388 FELGEP---DGAFETWHEMDKRG------------------CAQDVDTYCVMIDGLFDCS 426
            + G+    +  FE   E + R                   C   + TY  ++ GL    
Sbjct: 428 CKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSG 487

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            V +A  LLE ++  GL      F+S L
Sbjct: 488 MVRDALGLLEFMIESGLSPDVITFNSVL 515



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 219  MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            ++ L  M+  G +PD   Y T +D   KA     AA L + MR++G    SP  +TY IM
Sbjct: 877  LELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGH---SPDLRTYTIM 933

Query: 279  IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            I  L +  ++         M+     PD   Y  +++  C A KV++A+K L    + G 
Sbjct: 934  ISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR---SSGI 990

Query: 339  PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             P I  Y+  +  LC N+  D+AL +   M    C P +  +  L + Y   G  D A +
Sbjct: 991  EPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVK 1050

Query: 399  TWHEM 403
              +++
Sbjct: 1051 LVNDL 1055



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 54/286 (18%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           PE+    L++  LCK G ++ A                       + ++EM+  G  PD 
Sbjct: 104 PELITFGLIIKGLCKEGEIEAA----------------------FRVVDEMVDRGFVPDV 141

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             +   +   C+   V EA   F+ +   G T   P A TY  M+  L +  R+E    +
Sbjct: 142 EIHTVLLHALCELGRVDEAWFFFQQVLLIGFT---PDAVTYNTMVDGLYKAGRLEAAGMV 198

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  +  S   P V T+   ++G+  AG +  AY+F + M   G  P+ VTY+  +  LC 
Sbjct: 199 LQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCK 258

Query: 355 ------------NKNGDEALRLYGRMIE-----------------VGCWPSVQTYNMLIS 385
                       +KN    +  +  ++                  + C P+V  +N L++
Sbjct: 259 AGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMN 318

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              +    D AFE +  M + GC+ DV TY +++ GL    ++ EA
Sbjct: 319 GLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEA 364



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 59/132 (44%)

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +  LC      +A   + + I+ G  P+V TY+ +I       E D   +   
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM  RGCA +  TY  +++ L    + +EA  LLE +   G       F   +  L   G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 462 DLGAIHKLSDHM 473
           ++ A  ++ D M
Sbjct: 121 EIEAAFRVVDEM 132


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 125/269 (46%), Gaps = 11/269 (4%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M   G  P+   YNT +   C A    EA DL   M  +   +      T+ I++  
Sbjct: 281 LSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDD---VTFNILVDF 337

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             QN  ++    LL  M+  GC+PDV TY  V+ G C  G V+EA   L+ M   G  P+
Sbjct: 338 FCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 397

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            ++Y   LK LC  +   +A  L   MI+ GC P+  T+N LI+   + G  + A E   
Sbjct: 398 TISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLK 457

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M   GC+ D+ +Y  +IDGL    K EEA  LL  ++NKG+      + S    LS  G
Sbjct: 458 QMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREG 517

Query: 462 DLGAIHKLSDHMR--------KFYNPVIA 482
               I ++ D ++          YN VI+
Sbjct: 518 RTDKIIQMFDSIQDATVRSDAALYNAVIS 546



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 129/297 (43%), Gaps = 60/297 (20%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            N+L+D  C+ GLVD       RV               ++ LE+M++ G  PD  TY T
Sbjct: 331 FNILVDFFCQNGLVD-------RV---------------IELLEQMLEHGCIPDVITYTT 368

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I+ FCK  +V EA  L + M   G     P   +Y I++  L + +R  +   L+ HMI
Sbjct: 369 VINGFCKEGLVDEAVMLLKNMSACGC---KPNTISYTIVLKGLCRAERWVDAQELISHMI 425

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GCLP+  T+  ++  MC  G  E+A + L++M   G  PD+++Y+  +  L      +
Sbjct: 426 QQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 485

Query: 360 EALRLYGRMIEVGCWP--------------------------SVQT---------YNMLI 384
           EAL L   MI  G  P                          S+Q          YN +I
Sbjct: 486 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 545

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           S   +  E D A + +  M   GC  +  TY ++I GL     V EA  LL E+ ++
Sbjct: 546 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 602



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 29/269 (10%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           NL++ A+C+ G VD                       G++ L ++   G  PD  +YN  
Sbjct: 182 NLVVSAICEQGCVDE----------------------GVELLRKLPSFGCEPDIVSYNAV 219

Query: 241 IDTFCKAR-------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           +   C A+       ++ E   + E +        +P  + YA +I  + ++   E    
Sbjct: 220 LKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVAND 279

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +L  M + G  P+V  Y  VL+G+C A + EEA   L EM  +  P D VT+N  +   C
Sbjct: 280 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 339

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            N   D  + L  +M+E GC P V TY  +I+ + + G  D A      M   GC  +  
Sbjct: 340 QNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTI 399

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +Y +++ GL    +  +A  L+  ++ +G
Sbjct: 400 SYTIVLKGLCRAERWVDAQELISHMIQQG 428



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 16/226 (7%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G A     YN  I  +C+A  V  A  L   +         P A TY  ++ +L     +
Sbjct: 71  GDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVPVP------PNAYTYFPIVRSLCARGLI 124

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            +  ++L  M   GC         +LE  C  G    A + L+ +  KG   D    N  
Sbjct: 125 ADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLV 184

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG----------AFE 398
           +  +C+    DE + L  ++   GC P + +YN ++         D             E
Sbjct: 185 VSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHE 244

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              +M + GC  D+  Y  +IDG+      E A  +L  + + GLK
Sbjct: 245 ALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLK 290


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 146/292 (50%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           Y++ I  K  P++   + L+   C  G ++ A  + +  V   + P+  T+NIL      
Sbjct: 231 YSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCK 290

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++ G  P+  TY++ +D +C    V +A  +   +   G+   +P 
Sbjct: 291 EGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGA---APN 347

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           A +Y  MI    +   ++E  SL   M   G  PD  TY  +++G+C +G++  A++ ++
Sbjct: 348 AHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVD 407

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G P +I TYNC +  LC N + D+A+ L  ++ + G  P + T+N+LI    ++G
Sbjct: 408 EMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVG 467

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A + + ++  +G + +  TY +M++GL      +EA  LL ++ + G+
Sbjct: 468 RLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGI 519



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 141/290 (48%), Gaps = 16/290 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------ 217
           + E +     P+    N+L+DALCK G +  A+  +   +K  V PN  TY+ L      
Sbjct: 266 FREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCL 325

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  + QMG AP+  +Y T I+ FCK +MV EA  LF  M+ KG    +P 
Sbjct: 326 VNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI---APD 382

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L ++ R+   + L+  M ++G   ++ TY  +++ +C    V++A   ++
Sbjct: 383 KVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVK 442

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           ++ ++G  PD+ T+N  +  LC       A  ++  ++  G   +  TYN++++   + G
Sbjct: 443 KIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEG 502

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             D A     +MD  G   D  TY  +I  LF   + E+A  LL E++ +
Sbjct: 503 LFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIAR 552



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 141/318 (44%), Gaps = 16/318 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+I   N+L++  C    +++A   + K +K   +P+  T+N L             +  
Sbjct: 101 PDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHF 160

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            + ++ +G   D F+Y T I+  CK   + E     + +R     +       Y  +I +
Sbjct: 161 HDHVLALGFHLDQFSYGTLINGLCK---IGETRTALQMLRKIDGKLVKINVVMYNTIIDS 217

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++  + + + L   MI     PDV T+  ++ G C+ G++EEA+    EM  K   PD
Sbjct: 218 LCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPD 277

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+N  +  LC   N   A  +   M++ G  P+V TY+ L+  Y  + + + A    +
Sbjct: 278 YYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLN 337

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            + + G A +  +YC MI+G      V+EA  L  ++  KG+      ++S +  L   G
Sbjct: 338 TISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSG 397

Query: 462 DLGAIHKLSDHMRKFYNP 479
            +    +L D M     P
Sbjct: 398 RISYAWELVDEMHDNGQP 415



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 134/294 (45%), Gaps = 16/294 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G    A  + +++  K VK N   YN +              +   +MI   
Sbjct: 179 LINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKK 238

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +PD  T++  I  FC    + EA  LF  M  K     +P   T+ I++ AL +   ++
Sbjct: 239 ISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNI---NPDYYTFNILVDALCKEGNLK 295

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
              ++L  M+  G +P+V TY  +++G CL  +V +A   L  +   G  P+  +Y   +
Sbjct: 296 GAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMI 355

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  DEAL L+  M   G  P   TYN LI    + G    A+E   EM   G  
Sbjct: 356 NGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQP 415

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            ++ TY  +ID L     V++A  L++++ ++G++     F+  +  L  +G L
Sbjct: 416 ANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRL 469



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 44/205 (21%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------------GMQT 221
           P+    N L+D LCK G + YA  +   + +  +P N  TYN L             +  
Sbjct: 381 PDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIAL 440

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           ++++   G  PD +T+N  I   CK   +  A D+F+ + +KG +++   A TY IM+  
Sbjct: 441 VKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVN---AWTYNIMVNG 497

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM-------- 333
           L +    +E  +LL  M ++G +PD  TY+ +++ +    + E+A K L EM        
Sbjct: 498 LCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVVYA 557

Query: 334 --------------------GNKGY 338
                               G KGY
Sbjct: 558 LEGLEMVLHLESEAKDQEKFGKKGY 582



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 14/237 (5%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q    P N   +  + +F         + + EF +  GS + S               N+
Sbjct: 37  QFQFVPSNIDVDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKS--------------NNN 82

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
                 SL   +   G  PD+ T+  ++   C   ++  A+  + ++   GY PD +T+N
Sbjct: 83  HYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFN 142

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +K LC N    EAL  +  ++ +G      +Y  LI+   ++GE   A +   ++D +
Sbjct: 143 TLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGK 202

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
               +V  Y  +ID L     V +A  L  +++ K +      F + +    ++G L
Sbjct: 203 LVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQL 259


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 157/357 (43%), Gaps = 59/357 (16%)

Query: 157  VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY- 214
            +LLM LK YT        P++ + + +++  C+ G +D    + +++K K +KPN+ TY 
Sbjct: 692  LLLMELKGYT--------PDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYG 743

Query: 215  NILGM-----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            +I+G+           +   EMI  G  PD   Y T +D FCK   +  A+  F  M ++
Sbjct: 744  SIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSR 803

Query: 264  GSTISSPTAKTYAIMIVALVQNDRMEEC-------------------------------- 291
              T   P   TY  +I    Q   M E                                 
Sbjct: 804  DIT---PDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHI 860

Query: 292  ---FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
               F +  HMI +GC P+V TY  +++G+C  G ++ A + L EM   G  P+I TYN  
Sbjct: 861  KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 920

Query: 349  LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
            +  LC + N +EA++L G     G      TY  L+  Y + GE D A E   EM  +G 
Sbjct: 921  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGL 980

Query: 409  AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
               + T+ V+++G      +E+   LL  ++ KG+      F+  + Q  +  +L A
Sbjct: 981  QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKA 1037



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 130/296 (43%), Gaps = 22/296 (7%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
            +P+I     L++  CK G +  A  +    ++    PN  TY  L              +
Sbjct: 841  EPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 900

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL---FEFMRTKGSTISSPTAKTYAI 277
             L EM ++G  P+ FTYN+ ++  CK+  + EA  L   FE       T+      TY  
Sbjct: 901  LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV------TYTT 954

Query: 278  MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            ++ A  ++  M++   +L  M+  G  P + T+  ++ G CL G +E+  K L  M  KG
Sbjct: 955  LMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1014

Query: 338  YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              P+  T+NC +K  C   N   A  +Y  M   G  P  +TY  L+  +        A+
Sbjct: 1015 IAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAW 1074

Query: 398  ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
              + EM  +G +  V TY V+I G F   K  EA  + +++   GL      FD +
Sbjct: 1075 FLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFF 1130



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 3/241 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G+ PD  +Y+T I+ +C+   + +   L E M+ KG     P + TY  +I  L +  ++
Sbjct: 699 GYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGL---KPNSYTYGSIIGLLCRICKL 755

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E       MI  G LPD   Y  +++G C  G +  A KF  EM ++   PD++TY   
Sbjct: 756 AEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 815

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C   +  EA +L+  M+  G  P + T+  L++ Y + G    AF   + M + GC
Sbjct: 816 ISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGC 875

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
           + +V TY  +IDGL     ++ A  LL E+   GL+     ++S +  L   G++    K
Sbjct: 876 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 935

Query: 469 L 469
           L
Sbjct: 936 L 936



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 162  LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--G 218
             + +   I+    P +     L+D LCK G +D A E + +  K  ++PN  TYN +  G
Sbjct: 864  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 923

Query: 219  M---QTLEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
            +     +EE +++       G   D  TY T +D +CK+  + +A ++   M  KG    
Sbjct: 924  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGL--- 980

Query: 269  SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
             PT  T+ +++     +  +E+   LL  M+  G  P+ +T+  +++  C+   ++ A  
Sbjct: 981  QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATA 1040

Query: 329  FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              ++M ++G  PD  TY   +K  C+ +N  EA  L+  M   G   SV TY++LI  +F
Sbjct: 1041 IYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFF 1100

Query: 389  ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            +  +   A E + +M + G A D + +    D  +   + +     ++E++
Sbjct: 1101 KRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEII 1151



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/445 (20%), Positives = 184/445 (41%), Gaps = 39/445 (8%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           +++V KL  A        + + ++L        TD ++ VL + + + ++   FF WA  
Sbjct: 485 ITNVIKLRRA--------EPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFFDWARS 536

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN-NKVFVPV-DVLLMILKQY 165
           + +   E L   + + + +S   K  Q  L+ S  +  K N  + FV   D+L+   K +
Sbjct: 537 RRDSNLESLCIVIHLAV-ASKDLKVAQ-SLISSFWERPKLNVTESFVQFFDLLVYTYKDW 594

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN---------------KVKPN 210
               +V         ++    L + G++  A  + +++ N               ++  +
Sbjct: 595 GSDPRV--------FDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKD 646

Query: 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
            N      +    E  ++G   +  +YN  I   C+   + EA  L   M  KG T   P
Sbjct: 647 CNK-TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYT---P 702

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              +Y+ +I    +   +++ + L+  M   G  P+  TY  ++  +C   K+ EA +  
Sbjct: 703 DVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAF 762

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM  +G  PD + Y   +   C   +   A + +  M      P V TY  +IS + ++
Sbjct: 763 SEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI 822

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+   A + +HEM  RG   D+ T+  +++G      +++A  +   ++  G       +
Sbjct: 823 GDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTY 882

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRK 475
            + +  L   GDL + ++L   M K
Sbjct: 883 TTLIDGLCKEGDLDSANELLHEMWK 907


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 50/357 (14%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
            N++L  LC  G    A  + +++    +PNA TYN +             +  + EM +
Sbjct: 491 FNIMLRHLCSAGKPARALELLRQMP---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRE 547

Query: 228 MGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP---------------- 270
            G  AP+ +TY T I  +CK   V EA  +F+ M TKG                      
Sbjct: 548 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 607

Query: 271 -----------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
                            T  TY +++ AL  + R  E + L+  M   G  PDV TY  +
Sbjct: 608 DTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 667

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C  G V++A +  E M  +G    +VTY   +  L       E  +L+   +  G 
Sbjct: 668 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 727

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P +  YN LI+ +   G  D AFE   EM+K+  A D  TY  ++ GL    +V+EA  
Sbjct: 728 RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARK 787

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVIARRLALNQ 489
           L++E+  +G++     +++ +   S+ GD+  A+   ++ M K +NP +    AL Q
Sbjct: 788 LIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 844



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 141/302 (46%), Gaps = 18/302 (5%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANT 213
           VD  + +  +   K +VK  PE    N L+   C  G +D A     R V+  V     T
Sbjct: 571 VDEAVKVFDEMLTKGEVK--PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN+L              + +EEM   G APD FTYN  I+  CK   V +A ++FE M 
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 688

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +G      T  TY  +I AL +  +++E   L    +  G  PD+  Y  ++     +G
Sbjct: 689 RRGVRA---TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 745

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            ++ A++ + EM  K   PD VTYN  ++ LC     DEA +L   M E G  P + TYN
Sbjct: 746 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 805

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LIS Y   G+   A    +EM  +G    + TY  +I GL    + ++A  +++E+V  
Sbjct: 806 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 865

Query: 442 GL 443
           G+
Sbjct: 866 GI 867



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            +T+  +L  +C AGK   A + L +M      P+ VTYN  +   C       AL +  
Sbjct: 488 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 543

Query: 367 RMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFD 424
            M E  G  P+  TY  +IS + ++G  D A + + EM  +G    +   Y  +I G  D
Sbjct: 544 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 603

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             K++ A    + +V +G+ +    ++  +  L + G     ++L + M
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 652


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 155/337 (45%), Gaps = 46/337 (13%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--- 217
           ++ + +  K++  P +   N ++D LCK GLVD A  +C   V+N ++ +  +YN +   
Sbjct: 195 IQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHG 254

Query: 218 ---------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--- 264
                     ++ L+EM+  G   PD +T+N  ID  CK   V+EA ++   M  +G   
Sbjct: 255 FCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKP 314

Query: 265 -----------------------------STISSPTAKTYAIMIVALVQNDRMEECFSLL 295
                                           + P   +Y  +I    +   ++E   LL
Sbjct: 315 DIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLL 374

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M N   +PD  TY  +L+G+  +G+    +  +E M   G P D++TYN  L     +
Sbjct: 375 TEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKH 434

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           +  D+AL L+  +IE+G  P+++TYN+L+    + G    A E +  +  +GC  ++ TY
Sbjct: 435 EKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTY 494

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            +MI GL     ++EA  LL ++VN      Y  FD+
Sbjct: 495 NIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDT 531



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 139/323 (43%), Gaps = 26/323 (8%)

Query: 135 FRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194
           F  + S L  +KR N V     V L  + Q    IK    P +   ++L++A  + G + 
Sbjct: 72  FNKLLSTLIKLKRYNAV-----VSLYTILQSKPTIK----PSLITFSILINAFAQLGQMG 122

Query: 195 YAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAI 241
           +A ++   + K   + +      L             +  L E +  G   D   Y T I
Sbjct: 123 FAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTII 182

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           +  CK     +A  +F  M+        P    Y  +I  L +   ++E   L   M+ +
Sbjct: 183 NGLCKIGKTRDAIQMFPKMK---KIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVEN 239

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPDIVTYNCFLKVLCDNKNGDE 360
           G   DV +Y  ++ G C  G+ + A K L+EM  +G   PD+ T+N  +  LC      E
Sbjct: 240 GIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSE 299

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  +   MI+ G  P + +YN L++ Y   G    A + + +M +R    +V +YC +I+
Sbjct: 300 AYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLIN 359

Query: 421 GLFDCSKVEEACFLLEEVVNKGL 443
           G      V+EA  LL E+ NK L
Sbjct: 360 GYCKVRMVDEAMVLLTEMHNKNL 382



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 2/210 (0%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           +N  + T  K +       L+  +++K +    P+  T++I+I A  Q  +M   FSLLG
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTI--KPSLITFSILINAFAQLGQMGFAFSLLG 129

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           +++  G   DV     +++G+CL G+V EA   L E  ++G+  D V Y   +  LC   
Sbjct: 130 NILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIG 189

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
              +A++++ +M ++  +P++  YN +I    + G  D A     EM + G   DV +Y 
Sbjct: 190 KTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYN 249

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            MI G     + + A  LL+E+V +G   P
Sbjct: 250 SMIHGFCSVGRFQAAVKLLDEMVVRGKVYP 279



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           PS+ T+++LI+ + +LG+   AF     + K G   DV     ++ GL    +V EA  L
Sbjct: 103 PSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSL 162

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           L E V++G      +FD      ++I  L  I K  D ++ F
Sbjct: 163 LHEYVDRGF-----RFDEVCYG-TIINGLCKIGKTRDAIQMF 198


>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
 gi|194705268|gb|ACF86718.1| unknown [Zea mays]
 gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
          Length = 504

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 159/356 (44%), Gaps = 35/356 (9%)

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM----LDYMKRNNKV 151
           K+A++FF+WAG Q+ Y H    YNL++ + +        +RL   M    L    R   +
Sbjct: 160 KLAYKFFIWAGQQEGYQHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKGLPVSSRTFHL 219

Query: 152 FVPVDVLLMILKQYTEK-IKVKT---QPEINALNLLLDALCKCGLVDYAETICKRVKNKV 207
            +   V + + ++  E+ I+  T   +P  NA N +L  L         E +        
Sbjct: 220 LICASVKVGLRRRLVERFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVH------- 272

Query: 208 KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGST 266
                          E+MI  G++PD  TYN  +    +A+ +    D F + +   G  
Sbjct: 273 ---------------EKMILEGYSPDVLTYNVVL----RAKYMLGKLDQFHQLLDEMGKN 313

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             +P   TY +++  L + D+     +LL +M + GC P+V  +  +++G+  AG +E  
Sbjct: 314 GLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRAGNLEAC 373

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
             F +EM  KG  PD+V Y   +         +EA R +  M+  G  P+V TYN +I  
Sbjct: 374 RYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQLPNVYTYNSMIQG 433

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              +GE D AF    +MD  GC  +   Y  ++  L +  K  +A  +++ + +KG
Sbjct: 434 LCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRLRNAGKDTQANNVIKYMTDKG 489



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 114/272 (41%), Gaps = 38/272 (13%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ-- 284
           Q G+      YN  +  F +   V     LFE M  KG  +SS   +T+ ++I A V+  
Sbjct: 172 QEGYQHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKGLPVSS---RTFHLLICASVKVG 228

Query: 285 -NDRMEECF--------------------SLLG------------HMINSGCLPDVSTYK 311
              R+ E F                    +LL              MI  G  PDV TY 
Sbjct: 229 LRRRLVERFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYN 288

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            VL    + GK+++ ++ L+EMG  G  PD+ TYN  L VL        AL L   M +V
Sbjct: 289 VVLRAKYMLGKLDQFHQLLDEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDV 348

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC P+V  +  LI      G  +     + EM K+GC  DV  Y VMI       + EEA
Sbjct: 349 GCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEA 408

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
               ++++ +G       ++S +  L  +G+ 
Sbjct: 409 QRFFDDMLMRGQLPNVYTYNSMIQGLCAVGEF 440


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 19/290 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GMQTLE-------- 223
           P I   N++++ +C+   VD A  I  R+ +   +P+  +Y  +  G+   +        
Sbjct: 205 PNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVL 264

Query: 224 --EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM++    P+  T++  +  FC+  MV  A ++ + M   G T ++       I+I +
Sbjct: 265 FCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCN---IVINS 321

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +  R+++ F  L +M + GC PD  +Y  VL+G+C AG+ E+A + L EM  K  PP+
Sbjct: 322 ICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPN 381

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N F+ +LC     D+A+ L  +M E GC   + TYN L++ +   G  D A E ++
Sbjct: 382 EVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFN 441

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            +    C  +  TY  ++ GL    +++ A  LL E++     L    F+
Sbjct: 442 SLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFN 488



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 17/298 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           ++ A N L+   C+ G +D A  +   +   V P+A TY  L             +  L+
Sbjct: 104 DVFAYNTLVAGYCRYGRLDAARRLIASMP--VPPDAYTYTPLIRGLCDRGRVGDALSLLD 161

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M++    P   TY   ++  CK+    +A  + + MR KG T   P   TY ++I  + 
Sbjct: 162 DMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCT---PNIVTYNVIINGMC 218

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           + DR+++   +L  + + G  PD  +Y  VL+G+C A + E+      EM      P+ V
Sbjct: 219 REDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEV 278

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           T++  ++  C     + A+ +  RM E GC  +    N++I+   + G  D AFE  + M
Sbjct: 279 TFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNM 338

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              GC+ D  +Y  ++ GL    + E+A  LL E+V K        F++++  L   G
Sbjct: 339 GSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKG 396



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 142/330 (43%), Gaps = 48/330 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQ 220
           QP+  +   +L  LC     +  E + C+ V+N   PN  T+++L             ++
Sbjct: 239 QPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIE 298

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+ M + G   +    N  I++ CK   V +A   FEF+   GS   SP   +Y  ++ 
Sbjct: 299 VLDRMSEHGCTANTTLCNIVINSICKQGRVDDA---FEFLNNMGSYGCSPDTISYTTVLK 355

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  R E+   LL  M+   C P+  T+   +  +C  G +++A   +E+M   G   
Sbjct: 356 GLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSV 415

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLY--------------------------------GRM 368
            IVTYN  +   C     D AL L+                                  M
Sbjct: 416 GIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEM 475

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           ++  C  +V T+N+L+S + + G  + A E   +M + GC  ++ T+  ++DG+ +    
Sbjct: 476 MQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNS 535

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           EEA  LL  +V+KG+ L    + S +  LS
Sbjct: 536 EEALELLHGLVSKGISLDTITYSSIVDVLS 565



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 19/277 (6%)

Query: 181 NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N++++++CK G VD A E +         P+  +Y  +              + L EM++
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR 375

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P+  T+NT I   C+  ++ +A  L E M   G ++      TY  ++       R
Sbjct: 376 KNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVG---IVTYNALVNGFCVQGR 432

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++    L   +    C P+  TY  +L G+C A +++ A + L EM     P ++VT+N 
Sbjct: 433 VDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNV 489

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C     +EA+ L  +M+E GC P++ T+N L+    E    + A E  H +  +G
Sbjct: 490 LVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKG 549

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            + D  TY  ++D L    ++EEA  +   V + G++
Sbjct: 550 ISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMR 586



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 13/267 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL--------GMQTLEEM 225
           P++     L+  LC+ G    A  + +  +    P +   YN L         +     +
Sbjct: 68  PDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRL 127

Query: 226 I-QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           I  M   PD +TY   I   C    V +A  L + M  +      P+  TY +++ A+ +
Sbjct: 128 IASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRREC---QPSVVTYTVLLEAVCK 184

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           +    +   +L  M   GC P++ TY  ++ GMC   +V++A + L  + + G+ PD V+
Sbjct: 185 SSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVS 244

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   LK LC  K  ++   L+  M+E  C P+  T++ML+  +   G  + A E    M 
Sbjct: 245 YTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMS 304

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           + GC  +     ++I+ +    +V++A
Sbjct: 305 EHGCTANTTLCNIVINSICKQGRVDDA 331



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 54/318 (16%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
            P+  +   +L  LC+ G   D  E + + V+    PN  T+N               + 
Sbjct: 344 SPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAIL 403

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            +E+M + G +    TYN  ++ FC    V  A +LF  +  + +TI      TY  ++ 
Sbjct: 404 LIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTI------TYTTLLT 457

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L   +R++    LL  M+ + C  +V T+  ++   C  G VEEA + +++M   G  P
Sbjct: 458 GLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTP 517

Query: 341 DIVTYNCFLKVLCDNKNGDEALRL---------------YGRMIEV-------------- 371
           +++T+N  L  + ++ N +EAL L               Y  +++V              
Sbjct: 518 NLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMF 577

Query: 372 ------GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
                 G  P    YN ++S   +  E D A + +  M    C  +  TY ++I+GL   
Sbjct: 578 HAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLARE 637

Query: 426 SKVEEACFLLEEVVNKGL 443
             ++EA ++L E+ ++G+
Sbjct: 638 GLLKEARYVLSELCSRGV 655



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 32/195 (16%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L+  D + E   L+    + G  PDV    +++  +C  G+  +A + L      G P D
Sbjct: 45  LIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVD 104

Query: 342 IVTYNC--------------------------------FLKVLCDNKNGDEALRLYGRMI 369
           +  YN                                  ++ LCD     +AL L   M+
Sbjct: 105 VFAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDML 164

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
              C PSV TY +L+    +      A +   EM  +GC  ++ TY V+I+G+    +V+
Sbjct: 165 RRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVD 224

Query: 430 EACFLLEEVVNKGLK 444
           +A  +L  + + G +
Sbjct: 225 DARQILNRLSSYGFQ 239


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 185/412 (44%), Gaps = 37/412 (8%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           ++ +S + +++R + + + A   F   G Q  + H    Y+ +I  L+ TK    +F  V
Sbjct: 57  ISHESAINLIKR-EKDPQHALEIFNMVGEQKGFNHNHATYSTLIHKLAQTK----KFHAV 111

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQ--------------YTEKIKVKTQPEINALNLLL 184
            ++L  M      F   ++ L ++K               Y  +  V+ +P + A++  L
Sbjct: 112 DALLHQMTYETCKFHE-NIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCL 170

Query: 185 DALCKCGLVDYAETICKRVKN--KVKPNANTYNIL------------GMQTLEEMIQMGH 230
           + L +   +D A+     V    KV+PN   +NIL             ++ + EM +   
Sbjct: 171 NILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRR 230

Query: 231 A-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           + P+  TY+T ID  C    + EA +LFE M +K   +  P A TY+++I       + +
Sbjct: 231 SYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQIL--PDALTYSVLIKGFCHGGKAD 288

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               ++  M ++GC P+V  Y  ++ G C  G++EEA +  +EM + G  PD V Y   +
Sbjct: 289 RARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLI 348

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C     DEA+ L   M E+ C     T+N+L+      G  D A      +   G  
Sbjct: 349 NCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVY 408

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            +  +Y ++++ L    ++E++C LL  ++++G    Y   +  L+ L   G
Sbjct: 409 LNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAG 460



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 17/284 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL------------ 217
           ++ P +   + L+D LC  G +  A  + + +  K+++ P+A TY++L            
Sbjct: 230 RSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADR 289

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             + +E M   G  P+ F Y+  ++ FCK   + EA ++F+ M++ G     P    Y  
Sbjct: 290 ARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGL---KPDTVGYTT 346

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I       R++E   LL  M    C  D  T+  +L+G+C  G+ +EA + LE +  +G
Sbjct: 347 LINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEG 406

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              +  +Y   L  LC     +++  L G M+  G  P   T N L+    E G  D A 
Sbjct: 407 VYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAV 466

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
                + + G   +  ++  +I+ +    K+     L++E+V K
Sbjct: 467 TALFGLTQMGFTPEPKSWAHLIEYICRERKLLFVFELVDELVEK 510


>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
 gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
          Length = 504

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 160/362 (44%), Gaps = 47/362 (12%)

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           K+A++FF+WAG Q+ Y H    YNL++ + +        +RL   M+D            
Sbjct: 160 KLAYKFFIWAGQQEGYQHGTSMYNLVMKVFAECGEVKAMWRLFEEMMD------------ 207

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD-YAETICKRVKNKVKPNANTY 214
                      + + V ++      +LL+ A  K GL     E   K      +P  N +
Sbjct: 208 -----------KGLPVSSR----TFHLLICASGKAGLRRRLVEGFIKSSTFNYRPFRNAF 252

Query: 215 NILGMQTL-------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE-FM 260
           N + + TL             E+MI  G++PD  TYN  +    +A+ +    D F   +
Sbjct: 253 NAI-LHTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVM----RAKYMLGKLDQFHRLL 307

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
              G    +P   TY +++  L + D+     +LL +M + GC+P+V  +  +++G+  A
Sbjct: 308 DEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRA 367

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G +E    F +EM  KG  PD+V Y   +         +EA R +  M+  G  P+V TY
Sbjct: 368 GNLEACKYFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNVYTY 427

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           N +I     +GE D AF    +MD  GC  +   Y  ++  L    K  +A  +++ + +
Sbjct: 428 NSMIRGLCTVGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAGKDTQANNVIKYMTD 487

Query: 441 KG 442
           KG
Sbjct: 488 KG 489



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 114/272 (41%), Gaps = 38/272 (13%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA----- 281
           Q G+      YN  +  F +   V     LFE M  KG  +SS   +T+ ++I A     
Sbjct: 172 QEGYQHGTSMYNLVMKVFAECGEVKAMWRLFEEMMDKGLPVSS---RTFHLLICASGKAG 228

Query: 282 ----LVQ--------NDR-MEECFSLLGH-----------------MINSGCLPDVSTYK 311
               LV+        N R     F+ + H                 MI  G  PDV TY 
Sbjct: 229 LRRRLVEGFIKSSTFNYRPFRNAFNAILHTLLTIEQYSLIEWVHEKMILEGYSPDVLTYN 288

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            V+    + GK+++ ++ L+EMG  G  PD+ TYN  L VL        AL L   M +V
Sbjct: 289 VVMRAKYMLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDV 348

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC P+V  +  LI      G  +     + EM K+GC  DV  Y VMI       + EEA
Sbjct: 349 GCVPNVLHFTNLIDGLGRAGNLEACKYFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEA 408

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
               ++++ +G       ++S +  L  +G+ 
Sbjct: 409 QRFFDDMLLRGQLPNVYTYNSMIRGLCTVGEF 440



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 25/234 (10%)

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQYT 166
           + Y+ + L YN+++      KY   +      +LD M R+         ++LL +L +  
Sbjct: 278 EGYSPDVLTYNVVM----RAKYMLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHVLGKGD 333

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETI--CKRVKNKVKPNANTYNILGMQTLEE 224
           + +       +N LN + D  C   ++ +   I    R  N     A  Y        +E
Sbjct: 334 KPLAA-----LNLLNYMSDVGCVPNVLHFTNLIDGLGRAGNL---EACKY------FFDE 379

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MI+ G  PD   Y   I ++  A    EA   F+ M  +G     P   TY  MI  L  
Sbjct: 380 MIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQL---PNVYTYNSMIRGLCT 436

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
               ++ F++L  M + GC P+ S Y  ++  +  AGK  +A   ++ M +KG+
Sbjct: 437 VGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAGKDTQANNVIKYMTDKGH 490


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 162/366 (44%), Gaps = 39/366 (10%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR------NNKV 151
           A + F WA +   + H    Y  +I  L +      +F  V  +LD M        + ++
Sbjct: 55  ALQTFKWASNLPKFTHSQSTYRALIQKLCAFH----RFDTVYQLLDEMPHAIGSPPDEEI 110

Query: 152 FVPVDVLLMILKQYTEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKR-- 202
           F+ V   L   +     IKV          P +   N +LD L K   +D A    ++  
Sbjct: 111 FLTVIRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILDVLVKVD-IDVAREFYRKQM 169

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           + + V+ +  T+ IL            G + L+ M   G  P+   YNT +   CK   V
Sbjct: 170 MGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVVYNTLLHALCKNGKV 229

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
             A  L +        I  P   T+ ++I A  + + + +   LL    + G +PDV T 
Sbjct: 230 GRARSLMD-------EIEEPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTM 282

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
            +V+E +C AG+V EA + LE +  KG   D+V YN  L+  C       A R    M  
Sbjct: 283 TKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMER 342

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC P+V+TYN+LIS + + G  D A + +++M   G + + DTY  +I GLF   ++EE
Sbjct: 343 KGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEE 402

Query: 431 ACFLLE 436
              +LE
Sbjct: 403 GLKILE 408



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 137/332 (41%), Gaps = 51/332 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------------GMQT 221
           P++  +  +++ LC  G V  A  + +RV+ K    +   YN L              + 
Sbjct: 277 PDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRF 336

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM + G  P+  TYN  I  FC + M   A D+F  M+T G    S    TY  +I  
Sbjct: 337 LKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGI---SWNFDTYDTLIKG 393

Query: 282 LVQNDRMEECFSLLGHMINS--GCLPDVSTYKEVLEGM---------------------- 317
           L    R+EE   +L  M  S  G    +S Y  VL G+                      
Sbjct: 394 LFFGGRIEEGLKILELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFPR 453

Query: 318 -----------CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                      C  G V+ A    ++M N+G  P+I+ Y+C +   C   N  EA  L  
Sbjct: 454 AVDRSLRILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMN 513

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+  G +     +N LI  +   G+ + A +   +M  RGC  D  TY  +ID L    
Sbjct: 514 EMVGHGYFLVASGFNALIHGFCGQGKDESALKLLDDMVGRGCVPDRGTYSPLIDALCRKG 573

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
             ++A  +  +++ KG+      ++S L++LS
Sbjct: 574 NFQKALSIFNQMIEKGITPDSSTWNSLLIRLS 605


>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 190/423 (44%), Gaps = 61/423 (14%)

Query: 46  DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEE---------K 96
           D+  D  K+ E +  +   +D    ALD L + ++   V  VL+     +         K
Sbjct: 74  DAKIDAEKVIEILKQDGPGFDTF-LALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAK 132

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           + ++FF+W+G  +NY H   +Y++++ I +    + ++F+ +  +LD M        PV 
Sbjct: 133 LGYKFFIWSGRIENYRHTVNSYHIIMKIFA----ECEEFKAMWRVLDEMTEKG---YPVT 185

Query: 157 V-LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKV---KPNA 211
               MIL                        +C CG    A+ + +R +K+K    +P  
Sbjct: 186 ARTFMIL------------------------ICTCGEAGLAKRVVERFIKSKTFNFRPYK 221

Query: 212 NTYNIL--GMQTLEEMIQMG----------HAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
           ++YN +  G+  +++   +G          H+PD  TYN  + + CK   + +   L + 
Sbjct: 222 HSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDE 281

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M  KG    SP   TY I++  L + D+     +LL HM   G  P+V  +  ++ G+  
Sbjct: 282 MARKGF---SPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSR 338

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           AG ++    F +E+GN G  PD+V Y   +    +    ++A   +  MI  G  P+V T
Sbjct: 339 AGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFT 398

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN +I  +  +G+   A+    EM+ RGC  +   Y  ++  L +  K+ EA  +++ +V
Sbjct: 399 YNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKRMV 458

Query: 440 NKG 442
             G
Sbjct: 459 ENG 461



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + L+EM + G+     T+   I T  +A +     +   F+++K      P   +Y  ++
Sbjct: 172 RVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVE--RFIKSKTFNFR-PYKHSYNAIL 228

Query: 280 VALVQNDRMEECFSLLGHMINSGCL----PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             LV    + + + L+G + +   L    PD+ TY  +L   C  GK+++ ++ L+EM  
Sbjct: 229 HGLV----IVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMAR 284

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG+ PD  TYN  L VL        AL L   M EVG  P+V  +  LI+     G  D 
Sbjct: 285 KGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDA 344

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
               + E+   GC  DV  Y VMI    +  + E+A    +E++ KG +LP
Sbjct: 345 CKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG-QLP 394


>gi|242041823|ref|XP_002468306.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
 gi|241922160|gb|EER95304.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
          Length = 519

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 201/459 (43%), Gaps = 34/459 (7%)

Query: 44  SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQF---EEKIAFR 100
           +SD+ +D  ++Y  I+ ++     ME AL +  VPL++  +  V++RF+F   +   A  
Sbjct: 37  ASDADADAGEVYR-IVTSAATPSAMESALAASAVPLSSPLLDAVMRRFRFAHGDPLRALS 95

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
               A  +   A  P A +  + +L     +A++F  +  +L   +R     V     ++
Sbjct: 96  LLSLAADRGGVAPSPYAIDTALYVLG----RARRFPHMWDLLATTRRICPDAVTSRTAMI 151

Query: 161 ILKQYTEKIKV-KTQPEINAL-------------NLLLDALCKCGLVDYAETICKRVKNK 206
           +L +  +   V +T      L             N LL  LC+   +  A  +   +K  
Sbjct: 152 VLGRVAKVCSVHETVASFRRLARMFHAVDPACLFNALLRTLCQEKSMSDARNVFHALKYD 211

Query: 207 VKPNANTYNIL--GMQTLE-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
            + N +T+NIL  G ++ E       EM ++G  PD  TYN+ ID  CK R V +A  L 
Sbjct: 212 FRVNRHTFNILLSGWKSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRDVEKAYKLL 271

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + MR K     SP   TY  +I  L    + ++   LL  M   GC PDV  Y   +   
Sbjct: 272 DEMREKD---ISPDIITYTSLIGGLGLIGQPDKARDLLKEMHELGCSPDVPAYNAAIRNF 328

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
            +A ++ +A+  +++M +KG  P+  TYN F +      +     RLY RM   GC+P+ 
Sbjct: 329 VIAKRLGDAFALMDQMASKGLMPNPTTYNLFFRCYYWAFDIGSTWRLYERMRSEGCFPNT 388

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
           Q+   +I +    G+   A E W +M             V+ D L D  K+EE      +
Sbjct: 389 QSCMFIIRLCHRYGKVGQALELWSDMVSNRFGSFTLVSDVLFDLLCDEGKLEEVERCFCQ 448

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           +V  G K     F    + + V     +I +L++ M +F
Sbjct: 449 MVEFGQKPSNVAFRRIKILMQVAKQEESIARLTEKMAQF 487


>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 15/273 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230
           LLDALCK G V  A ++ + ++ +  P    +  L                L ++ + G 
Sbjct: 91  LLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGF 150

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            PD   YN  +  +  A  + +A DL + MR K      P   ++  +I AL    +MEE
Sbjct: 151 EPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKEC---EPNVMSFTTLIQALCAKKKMEE 207

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              +   M + GC  D  TY  ++ G C  GK+ + Y+ L+ M  +G+ P+ +TY   + 
Sbjct: 208 AMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMA 267

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                +  +E + L   M ++GC P +  YN++I +  +LGE       W+EM+  G + 
Sbjct: 268 AHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSP 327

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +DT+ +MI G      + EAC   +E+V +GL
Sbjct: 328 GLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGL 360



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           +   +D  CK   V EAA LFE MR +     +PT K +  ++    +  ++ E   +L 
Sbjct: 88  FGCLLDALCKNGSVKEAASLFEDMRIR----FTPTLKHFTSLLYGWCREGKLMEAKYVLV 143

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            +  +G  PD+  Y  +L G   AGK+ +AY  L+EM  K   P+++++   ++ LC  K
Sbjct: 144 QIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKK 203

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +EA+R++  M   GC     TY  LIS + + G+    +E    M ++G   +  TY 
Sbjct: 204 KMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYL 263

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKG 442
            ++       ++EE   L+EE+   G
Sbjct: 264 HIMAAHEKKEELEECIELMEEMRKIG 289



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 132/324 (40%), Gaps = 34/324 (10%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P+I   N LL      G +VD  + + +  + + +PN  ++  L             M+
Sbjct: 151 EPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMR 210

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM   G   D  TY T I  FCK   +++  +L + M  +G     P   TY  ++ 
Sbjct: 211 VFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHI---PNPMTYLHIMA 267

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A  + + +EEC  L+  M   GC PD++ Y  V+   C  G+++E  +   EM   G  P
Sbjct: 268 AHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSP 327

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW--PSVQTYNMLISMYFELGEPDGAFE 398
            + T+   +      +   EA   +  M+  G    P   T   L++      + + + +
Sbjct: 328 GLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKD 387

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            W  +  +GC  +V  + + I  LF    V+EAC    ++++ G                
Sbjct: 388 VWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAG---------------- 431

Query: 459 VIGDLGAIHKLSDHMRKFYNPVIA 482
           V+       KL   +RK YN  IA
Sbjct: 432 VMPQPDTFAKLMRGLRKLYNRQIA 455



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +L+ +C  G V+EA    E+M  + + P +  +   L   C      EA  +  ++ E G
Sbjct: 91  LLDALCKNGSVKEAASLFEDMRIR-FTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAG 149

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P +  YN L++ Y   G+   A++   EM ++ C  +V ++  +I  L    K+EEA 
Sbjct: 150 FEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAM 209

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            +  E+ + G       + + +      G +   ++L D+M
Sbjct: 210 RVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNM 250



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 36/232 (15%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E  K+   P++N  N+++   CK G              ++K     +N        EM 
Sbjct: 284 EMRKIGCTPDLNIYNIVIRLACKLG--------------EIKEGVRVWN--------EME 321

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G +P   T+   I  F   R + EA + F+ M  +G  +S+P   T   ++ +L++ +
Sbjct: 322 ATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRG-LLSAPQYGTLKELLNSLLRAE 380

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++E    +   ++  GC  +V  +   +  +   G V+EA  +  +M + G  P   T+ 
Sbjct: 381 KLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFA 440

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY----NMLISMYFELGEPD 394
             ++ L          +LY R I       V+       M   MY   GE +
Sbjct: 441 KLMRGL---------RKLYNRQIAAEITEKVRKMAAEREMTFKMYKRRGERN 483


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 174/396 (43%), Gaps = 27/396 (6%)

Query: 69  EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
           E  + +L   L    V  VL R Q +E++A +FF WA  Q  Y H+P+ Y  M+++LS T
Sbjct: 162 EGQMRNLLRSLKPSQVCAVL-RSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKT 220

Query: 129 KYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLLMILKQYTEKIKVKT-------QPEINAL 180
           K      R++  M    + R  + F  V V      Q  + +KV T       +P +   
Sbjct: 221 KLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLIC 280

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQ 227
           N  +D   +   ++ A    +R++   + PN  TYN +             ++ LE+M  
Sbjct: 281 NTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHS 340

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  +Y T +   CK + + E  DL + M  +   +  P   TY  +I  L ++D 
Sbjct: 341 KGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV--PDQVTYNTLIHMLTKHDH 398

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E    L      G   D   Y  ++  +C  G++ EA   + EM     PPD+VTY  
Sbjct: 399 ADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEM---DCPPDVVTYTA 455

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C     D+A +L   M   G  P+  +Y  L++     G+   A E  +  ++  
Sbjct: 456 VVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHW 515

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + +  TY V++ GL    K+ EAC ++ E+V KG 
Sbjct: 516 WSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGF 551



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 9/269 (3%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           +M   PD  TY   ++ FC+   V +A  L + M T G     P   +Y  ++  + +  
Sbjct: 443 EMDCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGH---KPNTVSYTALLNGMCRTG 499

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +  E   ++         P+  TY  ++ G+   GK+ EA   + EM  KG+ P  V  N
Sbjct: 500 KSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEIN 559

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L+ LC +    EA +     +  GC  +V  +  +I  + +  E D A     +M   
Sbjct: 560 LLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI 619

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDL 463
               DV TY  ++D L    ++ EA  L++++++KG+    + YR       Q+  + DL
Sbjct: 620 NKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDL 679

Query: 464 GAI-HKLSDHM--RKFYNPVIARRLALNQ 489
            AI  K+      R  YN VI +   L +
Sbjct: 680 VAILEKMISRQKCRTIYNQVIEKLCVLGK 708



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 25/267 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++     +++  C+ G VD A+ +                      L+ M   GH P+ 
Sbjct: 448 PDVVTYTAVVNGFCRLGEVDKAKKL----------------------LQVMHTHGHKPNT 485

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            +Y   ++  C+     EA    E M        SP + TY++++  L +  ++ E   +
Sbjct: 486 VSYTALLNGMCRTGKSLEAR---EMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDV 542

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           +  M+  G  P       +L+ +C  G+  EA KF+EE  NKG   ++V +   +   C 
Sbjct: 543 VREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQ 602

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           N   D AL +   M  +     V TY  L+    + G    A E   +M  +G      T
Sbjct: 603 NDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVT 662

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNK 441
           Y  +I       KV++   +LE+++++
Sbjct: 663 YRTVIHRYCQMGKVDDLVAILEKMISR 689



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 108/248 (43%), Gaps = 4/248 (1%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q  +  D   Y + ++   K ++   +  +   M+ +G    +P A  ++ ++V+  +  
Sbjct: 200 QWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRG-IYRTPEA--FSRVMVSYSRAG 256

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ +   +L  M  +G  P++      ++    A ++E+A +FLE M   G  P++VTYN
Sbjct: 257 QLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 316

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK- 405
           C ++  CD    +EA+ L   M   GC P   +Y  ++    +        +   +M K 
Sbjct: 317 CMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 376

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G   D  TY  +I  L      +EA + L++   KG ++    + + +  L   G +  
Sbjct: 377 HGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSE 436

Query: 466 IHKLSDHM 473
              L + M
Sbjct: 437 AKDLINEM 444



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 40/301 (13%)

Query: 145 MKRNNKVFVPVDVLL-MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203
           ++R  K+    DV+  M+LK +         P    +NLLL +LC+ G    A       
Sbjct: 530 LRREGKLSEACDVVREMVLKGFF--------PGPVEINLLLQSLCRDGRTHEARKF---- 577

Query: 204 KNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE--FMR 261
                             +EE +  G A +   + T I  FC+   +  A  + +  ++ 
Sbjct: 578 ------------------MEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI 619

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            K + +      TY  ++  L +  R+ E   L+  M++ G  P   TY+ V+   C  G
Sbjct: 620 NKHADVF-----TYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMG 674

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           KV++    LE+M ++     I  YN  ++ LC     +EA  L G+++        +T  
Sbjct: 675 KVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCY 732

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+  Y + G P  A++    M  R    DV     +   L    KV+EA  L+  +V +
Sbjct: 733 ALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVER 792

Query: 442 G 442
           G
Sbjct: 793 G 793


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    N+L+ A   CG++D A  I   +++  VKP+  TY  +             M+ 
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 451

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G APD + YN  I  FC    + +A +L   +   G  +       ++ +I  
Sbjct: 452 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD---IVFFSSIINN 508

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  PD   Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 509 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +   C     DE L L+  M++ G  PS   Y+++I   F+ G    A   +H
Sbjct: 569 VVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFH 628

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A D+ TY +++ GLF     +EA FL +E+    +K+
Sbjct: 629 EMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 672



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P++   N ++ ALCK   +D AE   +++ NK V PN  TYN L      
Sbjct: 242 FKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 301

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD  T +  + + CK   + EA D+F+ M  KG    +P 
Sbjct: 302 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ---NPD 358

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  PD  T+  +++     G +++A     
Sbjct: 359 VFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFN 418

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  PD+VTY   +  LC     D+A+  + +MI+ G  P    YN LI  +   G
Sbjct: 419 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 478

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A E   E+   G   D+  +  +I+ L    +V +A  + +  VN GL
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 136/337 (40%), Gaps = 53/337 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNIL------------GM 219
           P++ + ++LL +LC  G    A+ + + +        PN   YN +              
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 239

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              +EM+Q G  PD  TYN+ +   CKAR + +A     F+R   +    P   TY  +I
Sbjct: 240 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAE---AFLRQMVNKRVLPNNWTYNNLI 296

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                  + +E   +   M     LPDV T   ++  +C  GK++EA    + M  KG  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 340 PDIVTY-----------------------------------NCFLKVLCDNKNGDEALRL 364
           PD+ +Y                                   N  +K   +    D+A+ +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 416

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M + G  P V TY  +I+    +G+ D A E +++M  +G A D   Y  +I G   
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 476

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              + +A  L+ E++N G+ L    F S +  L  +G
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 513



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   ++     +LEG C A
Sbjct: 100 RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEA 159

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +Y+  LK LCD     +A  L   M E G  C P+V
Sbjct: 160 KRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNV 219

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN +I  +F+ G+ + A + + EM +RG   D+ TY  ++  L     +++A   L +
Sbjct: 220 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 279

Query: 438 VVNK 441
           +VNK
Sbjct: 280 MVNK 283



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 16/250 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P ++TY IL             +    ++++ G   +    N  ++ FC+A+   EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKE 312
           D+      +   +  P   +Y+I++ +L    +  +   LL  M   G  C P+V  Y  
Sbjct: 167 DILLHRTPELGCV--PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 224

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V++G    G V +A    +EM  +G PPD+VTYN  +  LC  +  D+A     +M+   
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+  TYN LI  Y   G+   A   + EM +     DV T  +++  L    K++EA 
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 344

Query: 433 FLLEEVVNKG 442
            + + +  KG
Sbjct: 345 DVFDTMAMKG 354



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 48/293 (16%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L    ++G  PD F+Y+  + + C      +A DL   M  +G  + SP    Y  +I  
Sbjct: 170 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMM-AEGGAVCSPNVVAYNTVIDG 228

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + +   L   M+  G  PD+ TY  V+  +C A  +++A  FL +M NK   P+
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 288

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +          EA+R++  M      P V T +ML+    + G+   A + + 
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 348

Query: 402 EMDKRGCAQDVDTYCVMIDG------------LFD-----------------------CS 426
            M  +G   DV +Y +M++G            LFD                       C 
Sbjct: 349 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCG 408

Query: 427 KVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +++A  +  E+ + G+K   + YR         +VI  L  I K+ D M KF
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYR---------TVIAALCRIGKMDDAMEKF 452



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 104/265 (39%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V   P+    ++L+D  C  G ++ A  +    V   ++PN   Y  L          
Sbjct: 526 VNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRI 585

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G+    EM+Q G  P    Y+  ID   +A     A   F  M   G  +      TY
Sbjct: 586 DEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMD---ICTY 642

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I++  L +N   +E   L   +       ++ T   +++GM    +VEEA      +  
Sbjct: 643 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 702

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               P +VTY+  +  L      +EA  ++  M   GC P+ +  N ++    +  E   
Sbjct: 703 SRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVR 762

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     ++D+R  + +  T  +++D
Sbjct: 763 AGAYLSKIDERNFSLEHLTTMLLVD 787


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 50/357 (14%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
            N++L  LC  G    A  + +++    +PNA TYN +             +  + EM +
Sbjct: 486 FNIMLRHLCSAGKPARALELLRQMP---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRE 542

Query: 228 MGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP---------------- 270
            G  AP+ +TY T I  +CK   V EA  +F+ M TKG                      
Sbjct: 543 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 602

Query: 271 -----------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
                            T  TY +++ AL  + R  E + L+  M   G  PDV TY  +
Sbjct: 603 DTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 662

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C  G V++A +  E M  +G    +VTY   +  L       E  +L+   +  G 
Sbjct: 663 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 722

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P +  YN LI+ +   G  D AFE   EM+K+  A D  TY  ++ GL    +V+EA  
Sbjct: 723 RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARK 782

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVIARRLALNQ 489
           L++E+  +G++     +++ +   S+ GD+  A+   ++ M K +NP +    AL Q
Sbjct: 783 LIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 839



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 141/302 (46%), Gaps = 18/302 (5%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANT 213
           VD  + +  +   K +VK  PE    N L+   C  G +D A     R V+  V     T
Sbjct: 566 VDEAVKVFDEMLTKGEVK--PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 623

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN+L              + +EEM   G APD FTYN  I+  CK   V +A ++FE M 
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 683

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +G      T  TY  +I AL +  +++E   L    +  G  PD+  Y  ++     +G
Sbjct: 684 RRGVRA---TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 740

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            ++ A++ + EM  K   PD VTYN  ++ LC     DEA +L   M E G  P + TYN
Sbjct: 741 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 800

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LIS Y   G+   A    +EM  +G    + TY  +I GL    + ++A  +++E+V  
Sbjct: 801 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 860

Query: 442 GL 443
           G+
Sbjct: 861 GI 862



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 6/169 (3%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            +T+  +L  +C AGK   A + L +M      P+ VTYN  +   C       AL +  
Sbjct: 483 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 538

Query: 367 RMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFD 424
            M E  G  P+  TY  +IS + ++G  D A + + EM  +G    +   Y  +I G  D
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             K++ A    + +V +G+ +    ++  +  L + G     ++L + M
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 647


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 16/287 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--------GMQ 220
           K   QP++   N ++  LCK   ++ A+  + + ++  +KPN  TY  L         MQ
Sbjct: 509 KKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQ 568

Query: 221 T----LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                 +EM+  G AP++      ID +CK    TEA  +F  M   G ++  P  +TY+
Sbjct: 569 VADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCML--GRSVH-PDVRTYS 625

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L++N +++    LL   +  G +PDV TY  ++ G C  G + +A++  E M  K
Sbjct: 626 ALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQK 685

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P+I+TYN  +  LC     + A  L+  +   G   +  TY  +I  Y + G    A
Sbjct: 686 GISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKA 745

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           F  + EM  +G   D   Y  +IDG       E+A  L  E V KG 
Sbjct: 746 FRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF 792



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 141/321 (43%), Gaps = 17/321 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILGM----------QTLEEMIQ 227
           N L+  +CK G ++ A+ +    +   +KP+  TYN  I G             L EM +
Sbjct: 380 NALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKK 439

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P  +T    I+  C+   + +A+ +FE M + G     P A  Y  +I   VQ  R
Sbjct: 440 SNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGV---KPNAVIYTTLIKGHVQEGR 496

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E   +L  M   G  PDV  Y  V+ G+C + K+EEA  +L EM  +G  P++ TY  
Sbjct: 497 FQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGA 556

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C +     A R +  M+  G  P+      LI  Y + G    A   +  M  R 
Sbjct: 557 LIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRS 616

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV TY  +I GL    K++ A  LL E + KGL      ++S +      G +G   
Sbjct: 617 VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAF 676

Query: 468 KLSDHM-RKFYNPVIARRLAL 487
           +L ++M +K  +P I    AL
Sbjct: 677 QLHEYMCQKGISPNIITYNAL 697



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 124/283 (43%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----GMQT-------- 221
           P +   N+++  LC+ G VD A  + K +  K +  +  TY+IL    G Q         
Sbjct: 269 PSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM   G  P +  Y   ID F +     EA  + E M  +G  ++     TY  ++  
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLN---LFTYNALVKG 385

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +   ME+  +LL  MI  G  PD  TY  ++EG             L EM      P 
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T    +  LC + + ++A R++  M+ +G  P+   Y  LI  + + G    A     
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILK 505

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            MDK+G   DV  Y  +I GL    K+EEA   L E++ +GLK
Sbjct: 506 VMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLK 548



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 133/329 (40%), Gaps = 50/329 (15%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL---- 217
           + + E +     P       L+D  CK G    A +I +  +   V P+  TY+ L    
Sbjct: 572 RYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGL 631

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    M+ L E ++ G  PD FTYN+ I  FCK   + +A  L E+M  KG    S
Sbjct: 632 LRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGI---S 688

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  +I  L +   +E    L   +   G   +  TY  +++G C +G + +A++ 
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL 748

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY------------------------ 365
            +EM  KG PPD   Y+  +       N ++AL L+                        
Sbjct: 749 FDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKS 808

Query: 366 GRMIEVG----------CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           G++IE              P   TY +LI  + + G    A + + +M KR    +  TY
Sbjct: 809 GKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTY 868

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             ++ G     +  E   L +E++ K ++
Sbjct: 869 TALLSGYNMAGRRSEMFALFDEMIAKDIE 897



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 30/323 (9%)

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195
           R   +++  + RN K+   ++    +L ++ EK  V   P++   N ++   CK G +  
Sbjct: 622 RTYSALIHGLLRNGKLQGAME----LLSEFLEKGLV---PDVFTYNSIISGFCKQGGIGK 674

Query: 196 A----ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNT 239
           A    E +C++    + PN  TYN L              +  + +   G A +  TY T
Sbjct: 675 AFQLHEYMCQK---GISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYAT 731

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            ID +CK+  +++A  LF+ M  KG     P +  Y+ +I    +    E+  SL    +
Sbjct: 732 IIDGYCKSGNLSKAFRLFDEMTLKGV---PPDSFVYSALIDGCRKEGNTEKALSLFLESV 788

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             G     S+   +++G C +GKV EA + LE+M +K   PD VTY   +   C      
Sbjct: 789 QKG-FASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLK 847

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EA + +  M +    P+  TY  L+S Y   G     F  + EM  +    D  T+ VMI
Sbjct: 848 EAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMI 907

Query: 420 DGLFDCSKVEEACFLLEEVVNKG 442
           D         +   L+++++ KG
Sbjct: 908 DAHLKEGDHVKTLKLVDDMLKKG 930



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 7/176 (3%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +L  +  A K+E  ++F   M       D+ TY   +       N  E  RL   M E G
Sbjct: 207 LLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C PS+ TYN++I      GE D AFE    MDK+G   DV TY ++IDG     +  EA 
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488
            +LEE+ +KGLK  +  + + +      GD G   ++ + M       +AR + LN
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEM-------LARGVKLN 375



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 154/373 (41%), Gaps = 23/373 (6%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           N E  L  +   L+ D V  V+ +   + K    FF W   Q  ++ +  +++++  IL 
Sbjct: 53  NWESLLPLVSNKLSPDVVHSVITKQVNDPKRLLDFFNWVQFQMGFSQKLQSFSILALILC 112

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEIN-----ALN 181
           +++  ++   +V  M+  M  +      +D L+   K++        +   N        
Sbjct: 113 NSRLFSRADSVVNQMI--MMSSGGYSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFE 170

Query: 182 LLLDALCKCGLVDYAETI---CKR---VKNKVKPNANTYNILGMQTLE-------EMIQM 228
           LL+D   K GL D A +     KR   V   +  N    ++L    LE        M++ 
Sbjct: 171 LLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEA 230

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
               D +TY   I+   +A    E   L   M  KG    SP+  TY ++I  L +   +
Sbjct: 231 NVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGC---SPSLVTYNVVIGGLCRAGEV 287

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E F L   M   G + DV TY  +++G     +  EA   LEEM +KG  P  V Y   
Sbjct: 288 DEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTAL 347

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +       +  EA R+   M+  G   ++ TYN L+    + G+ + A    +EM   G 
Sbjct: 348 IDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGI 407

Query: 409 AQDVDTYCVMIDG 421
             D  TY  MI+G
Sbjct: 408 KPDTQTYNNMIEG 420



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I A  +    +E   LL  M   GC P + TY  V+ G+C AG+V+EA++  + M
Sbjct: 238 TYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLM 297

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG   D+ TY+  +      K   EA  +   M   G  P    Y  LI  +   G+ 
Sbjct: 298 DKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDS 357

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             AF    EM  RG   ++ TY  ++ G+     +E+A  LL E++  G+K
Sbjct: 358 GEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIK 408



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 116/312 (37%), Gaps = 50/312 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N L++ LCK G ++ A  +   +  K +  NA TY  +              + 
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL 748

Query: 222 LEEMIQMGHAPDNFTY----------------------------------NTAIDTFCKA 247
            +EM   G  PD+F Y                                  N  +D FCK+
Sbjct: 749 FDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKS 808

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             V EA  L E M  K      P   TY I+I    +   ++E       M     +P+ 
Sbjct: 809 GKVIEANQLLEDMVDKHV---KPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNA 865

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            TY  +L G  +AG+  E +   +EM  K   PD VT++  +       +  + L+L   
Sbjct: 866 LTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDD 925

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M++ G   S    ++LI             +   +++++G    + T   ++       K
Sbjct: 926 MLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGK 985

Query: 428 VEEACFLLEEVV 439
           ++ A  +L+ +V
Sbjct: 986 MDGAARVLKSMV 997



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 17/214 (7%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTY-------NILGMQT---- 221
            +P+     +L+D  CK G +  AE       K  + PNA TY       N+ G ++    
Sbjct: 827  KPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFA 886

Query: 222  -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +EMI     PD  T++  ID   K     +   L + M  KG  +S        ++I 
Sbjct: 887  LFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCH---VLID 943

Query: 281  ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             L + + + E   +L  +   G    ++T   ++     AGK++ A + L+ M    + P
Sbjct: 944  PLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVP 1003

Query: 341  DIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGC 373
            D    N  + V  D+ + + A     +M  EV C
Sbjct: 1004 DSTELNDLINVEQDSTDSENAGDFLKQMAWEVAC 1037


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 190/424 (44%), Gaps = 39/424 (9%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           L   G+  T   +  V   F    K+    ++WA +Q  +  +   ++ +I+ L+  K  
Sbjct: 95  LTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVINALAKMKEF 154

Query: 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT-----------------EKIKVKTQ 174
              + LV   +     +++  V V    +I+++Y                  +K  V + 
Sbjct: 155 DDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKSIVDSV 214

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVK--PNANTYNIL------------GM 219
            E++   +L+D+LCK G   + +E + +R +  +   P+   YNI+              
Sbjct: 215 SEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAE 274

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  EEM      P   TY T ++ +C+ R V +A ++   M  +G     P A  Y  +I
Sbjct: 275 RLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGI---KPNAIVYNPII 331

Query: 280 VALVQNDRMEECFSLLG--HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            AL +  R +E   ++   H++  G  P +STY  +++G C AG +E A K L++M ++G
Sbjct: 332 DALAEAGRFKEALGMMERFHVLQIG--PTLSTYNSLVKGFCKAGDIEGASKILKKMISRG 389

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P   TYN F +        DE + LY +MIE G  P   TY++++ M  E  + + A 
Sbjct: 390 FLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAV 449

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +   EM  +G   D+ T  ++   L    K+EEA    E+++ +G+   Y  F    ++L
Sbjct: 450 QVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVEL 509

Query: 458 SVIG 461
              G
Sbjct: 510 KKQG 513


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    N+L+ A   CG++D A  I   +++  VKP+  TY  +             M+ 
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 464

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G APD + YN  I  FC    + +A +L   +   G  +       ++ +I  
Sbjct: 465 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD---IVFFSSIINN 521

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  PD   Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 522 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 581

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +   C     DE L L+  M++ G  PS   Y+++I   F+ G    A   +H
Sbjct: 582 VVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFH 641

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A D+ TY +++ GLF     +EA FL +E+    +K+
Sbjct: 642 EMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 685



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P++   N ++ ALCK   +D AE   +++ NK V PN  TYN L      
Sbjct: 255 FKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 314

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD  T +  + + CK   + EA D+F+ M  KG    +P 
Sbjct: 315 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ---NPD 371

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  PD  T+  +++     G +++A     
Sbjct: 372 VFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFN 431

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  PD+VTY   +  LC     D+A+  + +MI+ G  P    YN LI  +   G
Sbjct: 432 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 491

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A E   E+   G   D+  +  +I+ L    +V +A  + +  VN GL
Sbjct: 492 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 543



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 136/337 (40%), Gaps = 53/337 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNIL------------GM 219
           P++ + ++LL +LC  G    A+ + + +        PN   YN +              
Sbjct: 193 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 252

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              +EM+Q G  PD  TYN+ +   CKAR + +A     F+R   +    P   TY  +I
Sbjct: 253 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAE---AFLRQMVNKRVLPNNWTYNNLI 309

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                  + +E   +   M     LPDV T   ++  +C  GK++EA    + M  KG  
Sbjct: 310 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 369

Query: 340 PDIVTY-----------------------------------NCFLKVLCDNKNGDEALRL 364
           PD+ +Y                                   N  +K   +    D+A+ +
Sbjct: 370 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 429

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M + G  P V TY  +I+    +G+ D A E +++M  +G A D   Y  +I G   
Sbjct: 430 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 489

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              + +A  L+ E++N G+ L    F S +  L  +G
Sbjct: 490 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 526



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   ++     +LEG C A
Sbjct: 113 RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEA 172

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +Y+  LK LCD     +A  L   M E G  C P+V
Sbjct: 173 KRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNV 232

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN +I  +F+ G+ + A + + EM +RG   D+ TY  ++  L     +++A   L +
Sbjct: 233 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQ 292

Query: 438 VVNK 441
           +VNK
Sbjct: 293 MVNK 296



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 16/250 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P ++TY IL             +    ++++ G   +    N  ++ FC+A+   EA 
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKE 312
           D+      +   +  P   +Y+I++ +L    +  +   LL  M   G  C P+V  Y  
Sbjct: 180 DILLHRTPELGCV--PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 237

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V++G    G V +A    +EM  +G PPD+VTYN  +  LC  +  D+A     +M+   
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+  TYN LI  Y   G+   A   + EM +     DV T  +++  L    K++EA 
Sbjct: 298 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 357

Query: 433 FLLEEVVNKG 442
            + + +  KG
Sbjct: 358 DVFDTMAMKG 367



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 48/293 (16%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L    ++G  PD F+Y+  + + C      +A DL   M  +G  + SP    Y  +I  
Sbjct: 183 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMM-AEGGAVCSPNVVAYNTVIDG 241

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + +   L   M+  G  PD+ TY  V+  +C A  +++A  FL +M NK   P+
Sbjct: 242 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 301

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +          EA+R++  M      P V T +ML+    + G+   A + + 
Sbjct: 302 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 361

Query: 402 EMDKRGCAQDVDTYCVMIDG------------LFD-----------------------CS 426
            M  +G   DV +Y +M++G            LFD                       C 
Sbjct: 362 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCG 421

Query: 427 KVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +++A  +  E+ + G+K   + YR         +VI  L  I K+ D M KF
Sbjct: 422 MLDKAMIIFNEMRDHGVKPDVVTYR---------TVIAALCRIGKMDDAMEKF 465



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V   P+    ++L+D  C  G ++ A  +    V   ++PN   Y  L          
Sbjct: 539 VNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRI 598

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G+    EM+Q G  P    Y+  ID   +A     A   F  M   G  +      TY
Sbjct: 599 DEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMD---ICTY 655

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I++  L +N   +E   L   +       ++ T   +++GM    +VEEA      +  
Sbjct: 656 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 715

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               P++VTY+  +  L      +EA  ++  M   GC P+ +  N ++    +  E   
Sbjct: 716 SRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVR 775

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     ++D+R  + +  T  +++D
Sbjct: 776 AGAYLSKIDERNFSLEHLTAMLLVD 800


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 181/401 (45%), Gaps = 58/401 (14%)

Query: 67  NMEKALDSLGVP----LTTDSVVGVLQRFQFEEK-----IAFRFFMWAGHQDNYAHEPLA 117
           N + ALD L V     L  + +VG+L+   F+ K     +A++FF+W G Q+N+ H    
Sbjct: 172 NTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANC 231

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           Y+L++ I +    +  +++ +C ++D                       E IK       
Sbjct: 232 YHLLMKIFA----ECGEYKAMCRLID-----------------------EMIKDGYPTTA 264

Query: 178 NALNLLLDALCKCGLVDYAETICKR-VKNKV---KPNANTYN-----ILGMQ-------T 221
              NLL+   C CG    A  + ++ +K+K    +P  ++YN     +LG++        
Sbjct: 265 CTFNLLI---CTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWV 321

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+M++ G  PD  TYN  I  F   R+  +   L+  +        SP   TY I++  
Sbjct: 322 YEQMLEDGFTPDVLTYN--IVMFANFRL-GKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 378

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L   ++     +LL HM   G  P V  +  +++G+  AGK+E    F++E    G  PD
Sbjct: 379 LATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPD 438

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +         ++A  ++  M E G  P+V TYN +I  +   G+   A     
Sbjct: 439 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLK 498

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           EM+ RGC  +   Y  +++ L +  KV EA  +++++V KG
Sbjct: 499 EMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 539



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 6/208 (2%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           TA  Y +++    +    +    L+  MI  G      T+  ++   C  G+   A   +
Sbjct: 228 TANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLI---CTCGEAGLARDVV 284

Query: 331 EEMGNK---GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           E+        Y P   +YN  L  L   K       +Y +M+E G  P V TYN+++   
Sbjct: 285 EQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFAN 344

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           F LG+ D  +    EM K G + D+ TY +++  L   +K   A  LL  +   G++   
Sbjct: 345 FRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGV 404

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             F + +  LS  G L A     D   K
Sbjct: 405 IHFTTLIDGLSRAGKLEACKYFMDETVK 432


>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
 gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
 gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
 gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 181/401 (45%), Gaps = 58/401 (14%)

Query: 67  NMEKALDSLGVP----LTTDSVVGVLQRFQFEEK-----IAFRFFMWAGHQDNYAHEPLA 117
           N + ALD L V     L  + +VG+L+   F+ K     +A++FF+W G Q+N+ H    
Sbjct: 95  NTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANC 154

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           Y+L++ I +    +  +++ +C ++D                       E IK       
Sbjct: 155 YHLLMKIFA----ECGEYKAMCRLID-----------------------EMIKDGYPTTA 187

Query: 178 NALNLLLDALCKCGLVDYAETICKR-VKNKV---KPNANTYN-----ILGMQ-------T 221
              NLL+   C CG    A  + ++ +K+K    +P  ++YN     +LG++        
Sbjct: 188 CTFNLLI---CTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWV 244

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+M++ G  PD  TYN  +  F   R+  +   L+  +        SP   TY I++  
Sbjct: 245 YEQMLEDGFTPDVLTYNIVM--FANFRL-GKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 301

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L   ++     +LL HM   G  P V  +  +++G+  AGK+E    F++E    G  PD
Sbjct: 302 LATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPD 361

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +         ++A  ++  M E G  P+V TYN +I  +   G+   A     
Sbjct: 362 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLK 421

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           EM+ RGC  +   Y  +++ L +  KV EA  +++++V KG
Sbjct: 422 EMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
           F+   G      TA  Y +++    +    +    L+  MI  G      T+  ++   C
Sbjct: 139 FVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLI---C 195

Query: 319 LAGKVEEAYKFLEEMGNK---GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
             G+   A   +E+        Y P   +YN  L  L   K       +Y +M+E G  P
Sbjct: 196 TCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTP 255

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            V TYN+++   F LG+ D  +    EM K G + D+ TY +++  L   +K   A  LL
Sbjct: 256 DVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLL 315

Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             +   G++     F + +  LS  G L A     D   K
Sbjct: 316 NHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVK 355


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 174/408 (42%), Gaps = 49/408 (12%)

Query: 45  SDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA-FRFFM 103
           S  V D  +L E + D+ +A   +E  L  L   +T   V  VL+     +  A F FF 
Sbjct: 58  SRLVRDTCRLLE-LRDSWSA--KLEAQLRHLLRAMTPSQVRAVLRAQAQRDARAAFEFFR 114

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLLMIL 162
           WA  Q  Y H P  ++ M+ +LS T+      R++  M+   M R  + F        ++
Sbjct: 115 WADRQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFA------HLM 168

Query: 163 KQYTEKIKVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKP 209
             Y+   K+++              P+I   N+ ++ L   G +D A             
Sbjct: 169 LSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKA------------- 215

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++  E M ++G  PD  TYN  I   C AR + +A ++   M   G     
Sbjct: 216 ---------LEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCL--- 263

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   +Y  ++  L +  R+ +  +LL  M ++G  PD  TY  ++ G+   G  +EA  F
Sbjct: 264 PDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSF 323

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L E   K +  D V Y+  +   C N    EA  + G MI  GC P V TY+ ++  +  
Sbjct: 324 LRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCR 383

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
           +GE D A +    M K GC  +  T+  +++GL    K  EA  LL +
Sbjct: 384 IGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNK 431



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 40/281 (14%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           HAP+ F  +  +    + R+   A  +   M  +G    +   + +A ++++  +  ++ 
Sbjct: 124 HAPEVF--DEMLVLLSRTRLHDPARRVMRLMIRRGMPRGT---RQFAHLMLSYSRAGKLR 178

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +L  M   GC PD+      +  + +AG++++A +F E M   G  PD+VTYNC +
Sbjct: 179 SAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLI 238

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPS-------------------VQ------------ 378
           K LC  +   +AL +   M++ GC P                    VQ            
Sbjct: 239 KGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIF 298

Query: 379 ----TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
               TYNMLI    + G  D A     E + +    D   Y   +       ++ EA  +
Sbjct: 299 PDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEI 358

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           + E+++KG +     + + +     IG+L    K+  HM K
Sbjct: 359 IGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYK 399



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 112/264 (42%), Gaps = 25/264 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+    N+L+  L K G  D A +  +  + K       + +                D 
Sbjct: 299 PDQVTYNMLIHGLAKHGHADEALSFLRESEGK------RFRV----------------DE 336

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  + +FC    + EA ++   M +KG     P   TY+ ++    +   +++   +
Sbjct: 337 VGYSATVHSFCLNGRMAEAKEIIGEMISKG---CRPDVVTYSAVVDGFCRIGELDQARKM 393

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           + HM  +GC P+  T+  +L G+C  GK  EA++ L +   + + P  +TY+  +     
Sbjct: 394 MKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRR 453

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                E+  +  +M++ G +P+    N+LI       +P  A +   +   +GC  +V  
Sbjct: 454 EGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVN 513

Query: 415 YCVMIDGLFDCSKVEEACFLLEEV 438
           +  +I G      +E A  LL+++
Sbjct: 514 FTTVIHGFSRQGDLESALSLLDDM 537



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 124/319 (38%), Gaps = 51/319 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P       LL+ LCK G    A E + K  +    P+A TY+++               
Sbjct: 403 KPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCD 462

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + +M+Q G  P     N  I   C  R   +A D  E  ++KG  I+            
Sbjct: 463 VVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFS 522

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY +++ AL +  +M+E  SL+  M+N G  P   
Sbjct: 523 RQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPV 582

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
           TY+ V+   C  G VE+    L++M   +G+      YN  ++ LC      EA  L  +
Sbjct: 583 TYRTVIHRYCEKGAVEDLLNLLDKMLAKEGFSS---AYNQVIEKLCAFGKLSEANNLLSK 639

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           ++        QT ++L+  +   G P  ++     M +R    D+   C  +D     + 
Sbjct: 640 VLRTASKRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLIPDL-KLCQKVDSQLALAG 698

Query: 428 VEEACF-LLEEVVNKGLKL 445
            ++A   L+ + V +G+ +
Sbjct: 699 EKQAAGKLIIKFVERGVNM 717



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 125/306 (40%), Gaps = 35/306 (11%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILGMQTLEEM 225
           E I    +P++   + ++D  C+ G +D A  + K + KN  KPN  T+  L        
Sbjct: 361 EMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTAL-------- 412

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
                          ++  CK   V ++++ +E +        +P+A TY++++    + 
Sbjct: 413 ---------------LNGLCK---VGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRRE 454

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +++E   ++  M+  G  P       ++  +C   K  +A  F+E+  +KG   ++V +
Sbjct: 455 GKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNF 514

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +       + + AL L   M      P V TY +++      G+   A     +M  
Sbjct: 515 TTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLN 574

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           RG      TY  +I    +   VE+   LL++++ K        F S   Q  VI  L A
Sbjct: 575 RGLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLAK------EGFSSAYNQ--VIEKLCA 626

Query: 466 IHKLSD 471
             KLS+
Sbjct: 627 FGKLSE 632


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 151/357 (42%), Gaps = 46/357 (12%)

Query: 164 QYTEKI-KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           Q+ EK+ K + +P +    +L++ L K    D A  I K + ++   PN   YN L    
Sbjct: 253 QFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGY 312

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +Q  ++MI  G +P++ T N+ I  +CK+  +  A  L E M T G  I+ 
Sbjct: 313 CRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQ 372

Query: 270 --------------------------------PTAKTYAIMIVALVQNDRMEECFSLLGH 297
                                           P      +++  L QN +  E   L   
Sbjct: 373 GTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYR 432

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++  G   +  T   ++ G+C AG  EEA K L+EM  +G   D ++YN  +   C    
Sbjct: 433 LLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGK 492

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            +E  +L   M+  G  P + TYNML+     +G+ + A   WHE  K G   D  TY +
Sbjct: 493 VEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGI 552

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           MIDG    ++VEE   L +E+V   ++     + + +      G++    +L D MR
Sbjct: 553 MIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMR 609



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           +++ G A +  T N  I   C+A    EAA L + M  +G  + S +   Y  +I+A  +
Sbjct: 433 LLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSIS---YNTLILACCK 489

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++EE F L   M+  G  PD+ TY  +L G+C  GK+EEA     E    G  PD  T
Sbjct: 490 EGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYT 549

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +   C     +E  +L+  M+ +    +   Y  LI  Y E G    AF    +M 
Sbjct: 550 YGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMR 609

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            RG  Q   TY  +I GL +   V+ A  LL+E+  +GL
Sbjct: 610 SRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGL 648



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 125/278 (44%), Gaps = 16/278 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-----GMQTLEEMIQMGHA--- 231
           N L+ A CK G V+    + +  V+  ++P+  TYN+L      M  +EE   + H    
Sbjct: 481 NTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKK 540

Query: 232 ----PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD +TY   ID +CKA  V E   LF+ M T         A  Y  +I A  +N  
Sbjct: 541 NGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKI---EQNAVVYGTLIRAYCENGN 597

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           M E F L   M + G     +TY  ++ G+   G V+ A + L+EM  +G  P++V Y  
Sbjct: 598 MREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTA 657

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C      +   +   M      P+  TY ++I+ + +LG    A +  +EM ++G
Sbjct: 658 LIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKG 717

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
              D  TY  + +G     K+EEA  + + +   G+ L
Sbjct: 718 IVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISL 755



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 16/278 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV------KNKVKPNANTYNIL-------GMQ 220
           +P    L LL+  LC+ G    A  +  R+       N V  NA  + +          +
Sbjct: 404 KPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAK 463

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM++ G   D+ +YNT I   CK   V E   L E M  +G     P   TY +++ 
Sbjct: 464 LLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGI---QPDMYTYNMLLH 520

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    ++EE   L      +G  PD  TY  +++G C A +VEE  K  +EM       
Sbjct: 521 GLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQ 580

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + V Y   ++  C+N N  EA RL   M   G   +  TY+ LI     +G  D A +  
Sbjct: 581 NAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLL 640

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            EM K G + +V  Y  +I G     ++ +   +L+E+
Sbjct: 641 DEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEM 678



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 16/276 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  LC+ G  + A  + K  ++  +  ++ +YN L            G +  EEM++
Sbjct: 446 NALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVR 505

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD +TYN  +   C    + EA  L+   +  G+    P A TY IMI    + +R
Sbjct: 506 RGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNF---PDAYTYGIMIDGYCKANR 562

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   L   M+      +   Y  ++   C  G + EA++  ++M ++G P    TY+ 
Sbjct: 563 VEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSS 622

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  L +    D A +L   M + G  P+V  Y  LI  Y +LG+         EM    
Sbjct: 623 LIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINN 682

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              +  TY +MI+G      ++ A  LL E+  KG+
Sbjct: 683 VHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGI 718



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 20/270 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETI---CKRVKNKVKPNANTYNIL------ 217
           E ++   QP++   N+LL  LC  G ++ A  +   CK  KN   P+A TY I+      
Sbjct: 502 EMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECK--KNGNFPDAYTYGIMIDGYCK 559

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G +  +EM+ M    +   Y T I  +C+   + EA  L + MR++G      T
Sbjct: 560 ANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGI---PQT 616

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           + TY+ +I  L     ++    LL  M   G  P+V  Y  ++ G C  G++ +    L+
Sbjct: 617 SATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQ 676

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM      P+ +TY   +   C   N   A +L   M + G  P   TYN L + + + G
Sbjct: 677 EMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEG 736

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + + A +    M   G + D  TY  +IDG
Sbjct: 737 KMEEALKVCDLMSTGGISLDDITYTTLIDG 766



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 141/324 (43%), Gaps = 52/324 (16%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GMQTLE--- 223
           KV   P +   N ++  LCK G +D A    +++ K +VKP+  TY +L  G+  LE   
Sbjct: 225 KVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFD 284

Query: 224 -------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                  EM   G+AP+N  YNT ID +C+   ++ A  + + M + G    SP + T  
Sbjct: 285 EANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGI---SPNSVTCN 341

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I    ++++ME    LL  M+  G + +  T+  V+  +CL  + + A  F+ EM  +
Sbjct: 342 SLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLR 401

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
            + P+       +  LC N                                   G+   A
Sbjct: 402 NFKPNDGLLTLLVSGLCQN-----------------------------------GKQSEA 426

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            E W+ + ++G A +  T   +I GL +    EEA  LL+E++ +GL L    +++ ++ 
Sbjct: 427 IELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILA 486

Query: 457 LSVIGDLGAIHKLSDHM-RKFYNP 479
               G +    KL + M R+   P
Sbjct: 487 CCKEGKVEEGFKLKEEMVRRGIQP 510



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 3/229 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P   T N  + +  KA  V  +  +F+ M   G T   P    ++ M+ A     R+
Sbjct: 157 GLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVT---PDVYLFSTMVNAFCTGGRV 213

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++   L   M   G  P+V TY  ++ G+C  G+++EA++F E+M  +   P +VTY   
Sbjct: 214 DDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVL 273

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  L   +  DEA  +   M + G  P+   YN LI  Y  +G    A +   +M   G 
Sbjct: 274 INGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGI 333

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + +  T   +I G    +++E A  LLEE++  G  +    F S + +L
Sbjct: 334 SPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRL 382



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 3/189 (1%)

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +LF  +  KG     P+ KT   ++ +LV+ + ++  + +   M + G  PDV  +  ++
Sbjct: 148 ELFSLLANKGLF---PSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMV 204

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
              C  G+V++A +   +M   G  P++VTYN  +  LC N   DEA +   +M +    
Sbjct: 205 NAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVK 264

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           PS+ TY +LI+   +L   D A     EM  RG A +   Y  +IDG      +  A  +
Sbjct: 265 PSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQI 324

Query: 435 LEEVVNKGL 443
            +++++ G+
Sbjct: 325 RDDMISNGI 333



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE-----CFSLLGHMINSGCLPDVSTYK 311
           F F      T+  P      + ++  V + + +       F L   + N G  P + T  
Sbjct: 107 FNFFHFASETLFEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFPSLKTCN 166

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +L  +  A +V+ +Y+  + M + G  PD+  ++  +   C     D+A+ L+ +M +V
Sbjct: 167 FLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKV 226

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P+V TYN +I    + G  D AF+   +M+K      + TY V+I+GL    + +EA
Sbjct: 227 GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEA 286

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +L+E+ ++G       +++ +     IG++    ++ D M
Sbjct: 287 NCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDM 328


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 147/330 (44%), Gaps = 17/330 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN--ILGM----------Q 220
           +P I   N ++   C  G V+ A+ I   +K  K++P++ TY   I GM          +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM+Q G  P    YNT ID FC    +  A+   + M  KG    SPT  TY  +I 
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGI---SPTMSTYNSLIH 369

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL    R +E   ++  +   G  PD  TY  ++ G C     ++A+   +EM   G  P
Sbjct: 370 ALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKP 429

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
              TY   L VL       EA  L+ ++   G  P V  +N LI  +       GAFE  
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELL 489

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +MD+     D  T+  ++ G     KVEEA  L +E+  +G+K  +  F++ +   S  
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549

Query: 461 GDLGAIHKLSDHM-RKFYNPVIARRLALNQ 489
           GD+    ++ + M    +NP +    AL Q
Sbjct: 550 GDIKDAFRVRNEMLDTGFNPTVLTYNALVQ 579



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 16/294 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---- 217
           K + E ++   +P     N L+D  C  G +D A       +K  + P  +TYN L    
Sbjct: 312 KIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                       ++E+ + G +PD  TYN  I+ +C+     +A  L + M   G     
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGI---K 428

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT KTY  ++  L + +RM+E   L   + + G LPDV  +  +++G C    V+ A++ 
Sbjct: 429 PTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFEL 488

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L++M     PPD VT+N  ++  C     +EA  L+  M   G  P   ++N LIS Y  
Sbjct: 489 LKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSR 548

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G+   AF   +EM   G    V TY  ++ GL    + + A  LL+E+V+KG+
Sbjct: 549 RGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 3/235 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM ++      +T+N  I+  CK   + +A D    M T G     P   TY  ++    
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGV---KPNIVTYNTIVHGYC 267

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            + R+E   ++L  M      PD  TY  ++ GMC  G++EEA K  EEM  KG  P  V
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            YN  +   C+  N D A      M++ G  P++ TYN LI   F     D A     E+
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            ++G + D  TY ++I+G   C+  ++A  L +E++  G+K   + + S L  LS
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 123/269 (45%), Gaps = 16/269 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +K    P ++  N L+ AL      D AE + K ++ K + P+A TYNIL        
Sbjct: 351 EMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA 410

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                    +EM+  G  P   TY + +    K   + EA DLF+ + ++G     P   
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL---PDVI 467

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  +I     N  ++  F LL  M      PD  T+  +++G C  GKVEEA +  +EM
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PD +++N  +       +  +A R+   M++ G  P+V TYN L+    +  E 
Sbjct: 528 KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEG 587

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           D A E   EM  +G   D  TY  +I+G+
Sbjct: 588 DLAEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 1/229 (0%)

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           ++FEF+      +   ++  +  +I +    +R +E F     M   G LP + T   +L
Sbjct: 134 EIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLL 193

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                  + E A+    EM        + T+N  + VLC      +A    G M   G  
Sbjct: 194 SLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVK 253

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P++ TYN ++  Y   G  + A      M ++    D  TY  +I G+    ++EEA  +
Sbjct: 254 PNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKI 313

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNPVIA 482
            EE+V KGL+     +++ +      G+L       D M +K  +P ++
Sbjct: 314 FEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 38/245 (15%)

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           +  ++  I + C      EA + F  M+ KG     PT +T   ++   ++ +R E  + 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVL---PTIETCNSLLSLFLKLNRTEAAWV 207

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M        V T+  ++  +C  GK+++A  F+  M   G  P+IVTYN  +   C
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 354 DN---------------------------------KNG--DEALRLYGRMIEVGCWPSVQ 378
            +                                 K G  +EA +++  M++ G  PS  
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            YN LI  +   G  D A     EM K+G +  + TY  +I  LF   + +EA  +++E+
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 439 VNKGL 443
             KG+
Sbjct: 388 QEKGI 392


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 182/425 (42%), Gaps = 49/425 (11%)

Query: 49  SDVAKLYEAIIDNSNA-YDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA-G 106
           +D A + + I+ + N  + + +  L +   P T + V  VL+R       A +FF +   
Sbjct: 17  ADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDN 76

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           H   Y H+  +++L IDI +        + L+  M     R+ ++        ++ ++Y 
Sbjct: 77  HHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRM-----RSLRIGPSPKTFAIVAERYA 131

Query: 167 EKIKVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
              K                  ++ + N +LD LCK   V+ A  + + ++ +       
Sbjct: 132 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRF------ 185

Query: 214 YNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                            + D  TYN  ++ +C  +   +  ++ + M  +G    +P   
Sbjct: 186 -----------------SVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGI---NPNLT 225

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  M+    +  ++   +     M    C  DV TY  V+ G  +AG+++ A    +EM
Sbjct: 226 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 285

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P + TYN  ++VLC   N + A+ ++  M+  G  P+V TYN+LI   F  GE 
Sbjct: 286 IREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEF 345

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
               E    M+  GC  +  TY +MI    +CS+VE+A  L E+ +  G  LP    D+Y
Sbjct: 346 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEK-MGSGDCLP--NLDTY 402

Query: 454 LMQLS 458
            + +S
Sbjct: 403 NILIS 407


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 166/351 (47%), Gaps = 19/351 (5%)

Query: 109 DNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVL 158
           D    EP  + YN +ID L   K  ++   L   M       N V        F  V  L
Sbjct: 195 DGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKL 254

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL 217
              L    E +     P++   N L+DAL K G V  A+ +    VK  +KPN  TYN L
Sbjct: 255 TEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTL 314

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                      +  MG  PD ++YN  I+  CK + V EA +L++ M  K      P   
Sbjct: 315 IDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMV---PNTV 371

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L ++ R+   + L+  M + G   +V TY  ++ G+C  G++++A   + +M
Sbjct: 372 TYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKM 431

Query: 334 GNKGYPPDIVTYNCFLK-VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
            ++G  PD+ T N  L  +LC  K    A  L+  +++ G  P+V TYN++I  + + G 
Sbjct: 432 KDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGL 491

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D A+    +M+  GC+ +  T+ ++I  L +  + ++A  LL E++ +GL
Sbjct: 492 LDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 133/314 (42%), Gaps = 24/314 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP+   LN+L++  C  G ++ A ++  ++ K   +P+  T   L             + 
Sbjct: 95  QPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALH 154

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++++  G   D  +Y T I+  CK   + E     + +R     ++ P    Y  +I 
Sbjct: 155 FHDKLLAQGFRLDQVSYGTLINGVCK---IGETRAAIQLLRRIDGRLTEPNVVMYNTIID 211

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +   + E  +L   M   G   +V TY  ++ G C+ GK+ EA  FL EM  K   P
Sbjct: 212 CLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINP 271

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+  YN  +  L       EA  +   +++    P+V TYN LI  Y        A   +
Sbjct: 272 DVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKHVF 323

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + +   G   DV +Y +MI+ L    +VEEA  L +E+  K +      ++S +  L   
Sbjct: 324 NAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKS 383

Query: 461 GDLGAIHKLSDHMR 474
           G +     L D M 
Sbjct: 384 GRISYAWDLIDEMH 397



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 30/240 (12%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+   YNT ID  CK ++V+EA +LF  M  KG    S    TY+ +I       ++ E 
Sbjct: 201 PNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGI---SANVVTYSAIIHGFCIVGKLTEA 257

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL--------------------- 330
              L  M+     PDV  Y  +++ +   GKV+EA   L                     
Sbjct: 258 LGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDG 317

Query: 331 ------EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
                   +G  G  PD+ +YN  +  LC  K  +EAL LY  M +    P+  TYN LI
Sbjct: 318 YAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLI 377

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               + G    A++   EM  RG   +V TY  +I+GL    ++++A  L+ ++ ++G++
Sbjct: 378 DGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQ 437



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 3/222 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M+ M H P    +N  +D+F K +       L   +  K      P   T  I+I  
Sbjct: 51  FHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKA---IQPDFFTLNILINC 107

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                ++   FS+L  ++  G  PD  T   +++G+CL G+V++A  F +++  +G+  D
Sbjct: 108 FCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLD 167

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V+Y   +  +C       A++L  R+      P+V  YN +I    +      A   + 
Sbjct: 168 QVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFS 227

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +G + +V TY  +I G     K+ EA   L E+V K +
Sbjct: 228 EMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAI 269



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%)

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P I+ +N  L      K+    + L  R+      P   T N+LI+ +  LG+ + AF
Sbjct: 59  HTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAF 118

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               ++ K G   D  T   +I GL    +V++A    ++++ +G +L    + + +  +
Sbjct: 119 SVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGV 178

Query: 458 SVIGDLGA 465
             IG+  A
Sbjct: 179 CKIGETRA 186


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 200/464 (43%), Gaps = 48/464 (10%)

Query: 12  AQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESS-DSVSDVAKLYEAIIDNSNAYDNM-- 68
           A+ A L R+ +  S    I   P     V  ES+ D  +D+A    A + +   +  M  
Sbjct: 8   ARIARLSRIAQVPSRARSIATQP-----VAQESTEDEANDLAASSNAGVWSYRDFAQMLH 62

Query: 69  ----------EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM-WAGHQDNYAHEPLA 117
                     E ALD L   ++TD+VV + Q  + +  +A+  F   +  +  + H    
Sbjct: 63  SSSSSSRHSIEAALDRLRREISTDAVVKIFQCLK-DADLAWELFQCLSSPRFGFQHSVHT 121

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN----KVFVPVDVL-------LMILKQYT 166
            N ++D+ + TK   +   L+ + L  + R +     V +    L         ++++  
Sbjct: 122 GNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREME 181

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLEE 224
           E   V   P +   NL+L  LCK G V  A    + V+  +  +A T++IL  G+     
Sbjct: 182 EDFGV--APSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGM 239

Query: 225 MIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
           MIQ           G   D  TY   ++   K + + EA  L E +   G T   PT  T
Sbjct: 240 MIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCT---PTIAT 296

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  ++  L +  R+EE   LL  ++++GC PDV TY  +++G+    +  EAYK  +EM 
Sbjct: 297 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 356

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           ++G   D V Y   ++ L       +A  +Y  M   GC P V T + +I    + G   
Sbjct: 357 SRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG 416

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            A   +  M+ RG A +   Y  +I GL    K++ A  +L ++
Sbjct: 417 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 460



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 142/300 (47%), Gaps = 34/300 (11%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAET 198
           ++++++ +N K+   V ++        EKI      P I   N LL+ LCK G ++ A  
Sbjct: 264 AIVNWLAKNKKIQEAVALM--------EKITANGCTPTIATYNALLNGLCKMGRLEEA-- 313

Query: 199 ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
                               +  L +++  G  PD  TY + ID   K +   EA  LF+
Sbjct: 314 --------------------IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 353

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M ++G  + +     Y  +I  L+Q  ++ +  S+   M + GC+PDV T   +++G+ 
Sbjct: 354 EMASRGLALDTVC---YTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 410

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AG++  A +  + M  +G  P+ V Y+  +  LC  +  D AL +  +M +  C P   
Sbjct: 411 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 470

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TYN+LI    + G+ + A   + EM + GC  DV TY ++I GL      + AC +L+++
Sbjct: 471 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM 530



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 41/271 (15%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           T N  +D F + +   EA +L   ++ + +TI  P  +T+ ++I         EE F+++
Sbjct: 121 TGNALLDVFARTKRHREAGNL---LKNELATIFRPDVETWNVLITGYCLAREPEEAFAVI 177

Query: 296 GHMINS-GCLPDVSTYKEVLEGMCLAGKVE------------------------------ 324
             M    G  P + T+  VL G+C +GKV                               
Sbjct: 178 REMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKA 237

Query: 325 ----EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
               +A+   +E    G   DI TY   +  L  NK   EA+ L  ++   GC P++ TY
Sbjct: 238 GMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATY 297

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           N L++   ++G  + A +   ++   GC  DV TY  +IDGL    +  EA  L +E+ +
Sbjct: 298 NALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAS 357

Query: 441 KGLKLP---YRKFDSYLMQLSVIGDLGAIHK 468
           +GL L    Y      L+Q   I    +++K
Sbjct: 358 RGLALDTVCYTALIRGLLQTGKIPQASSVYK 388



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 124/305 (40%), Gaps = 67/305 (21%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++  L+ ++D L K G +  A  I K ++ +                      G AP+ 
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR----------------------GLAPNE 434

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  I   CKAR +  A ++   M+       +P   TY I+I  L ++  +E   + 
Sbjct: 435 VVYSALIHGLCKARKMDCALEMLAQMK---KAFCTPDTITYNILIDGLCKSGDVEAARAF 491

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+ +GC PDV TY  ++ G+C AG  + A   L++M +  +      Y+  +  LC 
Sbjct: 492 FDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRF-----VYSSLVDGLC- 545

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
            K+G          +E GC            M F            HEM++ G A    T
Sbjct: 546 -KSGK---------LEGGC------------MLF------------HEMERSGVANS-QT 570

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
              +I  L   ++V+EA  L   +  +G+  PY  ++S +  L   G +     +   M 
Sbjct: 571 RTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPY-AYNSIISALIKSGKVNEGQAVYQEMT 629

Query: 475 KFYNP 479
           +++ P
Sbjct: 630 RWWKP 634



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 22/221 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTLEEMIQMGH--- 230
           P+    N+L+D LCK G V+ A       ++   KP+  TYNIL    +  + + G+   
Sbjct: 467 PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL----ISGLCKAGNTDA 522

Query: 231 --------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
                   +   F Y++ +D  CK+  +     LF  M   G   S    +T   +I  L
Sbjct: 523 ACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANS----QTRTRLIFHL 578

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            + +R++E  SL   +   G +P    Y  ++  +  +GKV E     +EM  + + PD 
Sbjct: 579 CKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQEM-TRWWKPDR 636

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           VTYN  L  +      D A   Y  M   G  P V   + L
Sbjct: 637 VTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKL 677



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 22/190 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------- 217
           + E ++   +P++   N+L+  LCK G  D A   C  V + +  +   Y+ L       
Sbjct: 492 FDEMLEAGCKPDVYTYNILISGLCKAGNTDAA---CG-VLDDMSSSRFVYSSLVDGLCKS 547

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                G     EM + G A ++ T    I   CKA  V EA  LF  +R +G     P  
Sbjct: 548 GKLEGGCMLFHEMERSGVA-NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM----PHP 602

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  +I AL+++ ++ E  ++   M      PD  TY  +L GM  A +++ A+ +  E
Sbjct: 603 YAYNSIISALIKSGKVNEGQAVYQEMTR-WWKPDRVTYNALLNGMIGANRMDRAHYYYLE 661

Query: 333 MGNKGYPPDI 342
           M  +GY P +
Sbjct: 662 MTGRGYVPPV 671


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 167/401 (41%), Gaps = 56/401 (13%)

Query: 79   LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
            L+TD VV VL   +  E    +FF W   +  Y H   A+N +++ L       +Q++  
Sbjct: 1626 LSTDIVVDVLNHARDVEP-TIQFFEWCHGRHGYTHTAFAFNRLLEFL----VNKRQYKRA 1680

Query: 139  CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
              ML    + +           I++ Y E  + +      AL LL               
Sbjct: 1681 HQMLIAESKPSSFQANAFTYSTIVRGYCEDGETR-----QALALLEHM------------ 1723

Query: 199  ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
                 K +V  NA  YNI+                       +   CK     EA DL  
Sbjct: 1724 ----KKAEVPANAKLYNII-----------------------LTHLCKHGKEKEALDLLH 1756

Query: 259  FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
             M T   T  +P   TY I+I AL +  R+E+   L+  M    C  D+ TY  ++ G+C
Sbjct: 1757 SMAT---TSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLC 1813

Query: 319  LAG----KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
              G    +VE A++  EEM +KG+ P  VTY   +  L   K  ++A ++   M E GC 
Sbjct: 1814 RKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCA 1873

Query: 375  PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
              + TYNMLI+ + + G  D A + + EM  RGC  DV TY  ++DG     KVEEA  L
Sbjct: 1874 FDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKL 1933

Query: 435  LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              E+  +G+    R + S        G +   H     MRK
Sbjct: 1934 FAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRK 1974



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 22/250 (8%)

Query: 116  LAYNLMIDIL---SSTKYKAKQ-FRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171
            + YN +I  L    + +++ ++ FRL   M+D      K   P  V   ++     ++K+
Sbjct: 1803 VTYNTLIHGLCRKGNGRFRVERAFRLFEEMVD------KGHTPTSVTYTVVIDALLRVKM 1856

Query: 172  KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
              Q +   L+L+ +  C   LV Y   I +  K  +   A       M    EM   G  
Sbjct: 1857 DEQAQ-KVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKA-------MDLFVEMPTRGCI 1908

Query: 232  PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
            PD  TYN+ +D FCKA  V EA  LF  M+ +G     P  +TY  +  A ++  RM++ 
Sbjct: 1909 PDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIF---PNGRTYTSITDACLKAGRMQDA 1965

Query: 292  FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             + L  M   G L D  +Y  ++  +C  GK +  ++ L EM  KG+ P++VT+N   + 
Sbjct: 1966 HAYLVEMRKEG-LVDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEA 2024

Query: 352  LCDNKNGDEA 361
            L    N D+A
Sbjct: 2025 LSKESNTDDA 2034


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 138/303 (45%), Gaps = 17/303 (5%)

Query: 150 KVFVPVDVLLMI-LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-V 207
           +V +  +V  M+    Y E +K    P +    +L+D L K G    A+ +   +  + +
Sbjct: 170 RVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGI 229

Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            PN  TY IL              +   EM   G+ PD+  +N  +D FCK   + EA +
Sbjct: 230 SPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFE 289

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L       G  +     + Y+ +I  L +  R  + F L  +M+     PD+  Y  +++
Sbjct: 290 LLRLFEKDGFVLG---LRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQ 346

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G+  AGK+E+A K L  M +KG  PD   YN  +K LC     +E   L   M E   +P
Sbjct: 347 GLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFP 406

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
              T+ +LI      G    A E + E++K GC+  V T+  +IDGL    +++EA  LL
Sbjct: 407 DACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLL 466

Query: 436 EEV 438
            ++
Sbjct: 467 HKM 469



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 12/230 (5%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           QTLEE+   G + D++ +   I  + K  M  +A + F  M+        P   TY +++
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDC---RPDVFTYNVIL 169

Query: 280 VALVQNDRMEECFSLLG-----HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
             +++    EE F +L       M+   C P++ T+  +++G+   G+  +A K  ++M 
Sbjct: 170 RVMMR----EEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMT 225

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            +G  P+ VTY   +  LC   + D+A +L+  M   G +P    +N L+  + +LG   
Sbjct: 226 GRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMV 285

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            AFE     +K G    +  Y  +IDGLF   +  +A  L   ++ K +K
Sbjct: 286 EAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIK 335



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 146/381 (38%), Gaps = 63/381 (16%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E AL+ L VP  + +++  + + +   ++ FRFF+WA  +        ++ L+ID+LS 
Sbjct: 47  IEPALEPL-VPFLSKNIITSVIKDEVNRQLGFRFFIWA-SRRERLRSRESFGLVIDMLSE 104

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
                      C +                              +T  E+ +  + +D+ 
Sbjct: 105 DN--------GCDLY----------------------------WQTLEELKSGGVSVDSY 128

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGM-----QTLEEMIQMGHAPDNFTYNTAID 242
           C C L+                  + Y  +GM     ++   M +    PD FTYN  + 
Sbjct: 129 CFCVLI------------------SAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILR 170

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
              +  +    A  F           SP   T+ I++  L +  R  +   +   M   G
Sbjct: 171 VMMREEVFFMLA--FAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRG 228

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P+  TY  ++ G+C  G  ++A K   EM   G  PD V +N  L   C      EA 
Sbjct: 229 ISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAF 288

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L     + G    ++ Y+ LI   F       AFE +  M K+    D+  Y ++I GL
Sbjct: 289 ELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGL 348

Query: 423 FDCSKVEEACFLLEEVVNKGL 443
               K+E+A  LL  + +KG+
Sbjct: 349 SKAGKIEDALKLLSSMPSKGI 369



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 42/291 (14%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
            +D +      Y+ +ID L   +   + F L  +ML   K+N K   P  +L  IL Q  
Sbjct: 295 EKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANML---KKNIK---PDIILYTILIQGL 348

Query: 167 EKI-KVK-------------TQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNA 211
            K  K++               P+    N ++ ALC  GL++   ++  +  + +  P+A
Sbjct: 349 SKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDA 408

Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
            T+ IL              +   E+ + G +P   T+N  ID  CK+  + EA  L   
Sbjct: 409 CTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHK 468

Query: 260 MRTKGST-----ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           M           +S    +++  M    V++  + + +  L H  ++G  PD+ +Y  ++
Sbjct: 469 MEVGRPASLFLRLSHSGNRSFDTM----VESGSILKAYRDLAHFADTGSSPDIVSYNVLI 524

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
            G C AG ++ A K L  +  KG  PD VTYN  +  L      +EA +L+
Sbjct: 525 NGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLF 575


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 23/305 (7%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S+L+   R ++V+   D L M    + + + +  +P +   N ++D LCK   VD A  +
Sbjct: 156 SLLNGFCRGDRVY---DALYM----FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDL 208

Query: 200 CKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             R+ K+ + P+  TYN L              + +  M +    PD FT+N  ID   K
Sbjct: 209 LNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              V+EA + +E M  +      P   TY+++I  L    R++E   + G M++ GC PD
Sbjct: 269 EGRVSEAEEFYEEMIRRSL---DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPD 325

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V TY  ++ G C + KVE   K   EM  +G   + VTY   ++  C     + A  ++ 
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFR 385

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           RM+  G  P++ TYN+L+    + G+ + A     +M K G   D+ TY ++I G+    
Sbjct: 386 RMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAG 445

Query: 427 KVEEA 431
           +V +A
Sbjct: 446 EVADA 450



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 19/301 (6%)

Query: 181 NLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+LL+  C+C  +  A + + K +K   +P+  T+  L             +   ++M+ 
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           MG+ P+   YNT ID  CK++ V  A DL   M   G     P   TY  +I  L  + R
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI---GPDVVTYNSLISGLCSSGR 236

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             +   ++  M      PDV T+  +++     G+V EA +F EEM  +   PDIVTY+ 
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC     DEA  ++G M+  GC+P V TY++LI+ Y +  + +   + + EM +RG
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
             ++  TY ++I G     K+  A  +   +V  G+   +    +Y + L  + D G I 
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV---HPNIITYNVLLHGLCDNGKIE 413

Query: 468 K 468
           K
Sbjct: 414 K 414



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 16/225 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------ 217
           Y E I+    P+I   +LL+  LC    +D AE +    V     P+  TY+IL      
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+   EM Q G   +  TY   I  +C+A  +  A ++F  M   G     P 
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV---HPN 395

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY +++  L  N ++E+   +L  M  +G   D+ TY  ++ GMC AG+V +A+    
Sbjct: 396 IITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYC 455

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            +  +G  PDI TY   +  L       EA  L+ +M E G  P+
Sbjct: 456 SLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 79/170 (46%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T  I++    +  ++    S LG MI  G  P + T+  +L G C   +V +A    ++M
Sbjct: 118 TCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQM 177

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY P++V YN  +  LC +K  D AL L  RM + G  P V TYN LIS     G  
Sbjct: 178 VGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRW 237

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             A      M KR    DV T+  +ID      +V EA    EE++ + L
Sbjct: 238 SDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++++   L  HM+    LP ++ +  +L  +    K +      E+M   G P ++ T N
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C       AL   G+MI++G  PS+ T+  L++ +        A   + +M   
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           G   +V  Y  +IDGL    +V+ A  LL  +   G+      ++S +  L   G     
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 467 HKLSDHMRK 475
            ++   M K
Sbjct: 241 TRMVSCMTK 249


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E +++   P I     L+D LCK G +D A  +   ++ K ++ N   YN +      
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ ++EM   G  PD  TY T ID +C+   + +A  L + M  +G     PT
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGL---QPT 572

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ +++        +E+   LLG M+  G +PD  TY  +++  C+   +    K  +
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M N+G  PD  TYN  +K  C  +N  EA  LY  MIE G  P+V +YN LI  +++  
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKR 692

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A E + EM   G   D + Y   +D  ++   VE    L +E + K L
Sbjct: 693 KFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCL 744



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL---- 217
           K + E +  K  P+      L+    + G +++      + +   +KP+  TY  L    
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                         EM+QMG  P+  TY   ID  CK   +  A +L + MR KG  ++ 
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN- 502

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
                Y  M+  + +   +E+   L+  M  +G  PD  TY  V++  C  G +++A+K 
Sbjct: 503 --VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKL 560

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L+EM ++G  P +VT+N  +   C     ++  RL G M+E G  P   TYN L+  +  
Sbjct: 561 LQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCI 620

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               +   + +  M  +G A D +TY ++I G      ++EA FL +E++ KG
Sbjct: 621 RNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 140/314 (44%), Gaps = 16/314 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P     N ++  LCK G    AE + + +   K+ P+   Y  L              +
Sbjct: 325 KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK 384

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+    +PD  TY T I  F +   V E  +LF  M ++G     P   TY  +I 
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGL---KPDEVTYTTLID 441

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   M   FSL   M+  G  P++ TY  +++G+C  G+++ A + L+EM  KG   
Sbjct: 442 VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQL 501

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++  YN  +  +C   N ++A++L   M   G  P   TY  +I  Y  LG+ D A +  
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM  RG    V T+ V+++G      +E+   LL  ++ KG+      +++ + Q  + 
Sbjct: 562 QEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIR 621

Query: 461 GDLGAIHKLSDHMR 474
             +    K+   MR
Sbjct: 622 NSMNTTTKIYKRMR 635



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 14/296 (4%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           LLD L   GLV   ++ C    +++  N+    +     ++   + G + +  +YN  I 
Sbjct: 212 LLDKLLSYGLVVTVDS-CNAFLSRIANNSEGIEM----AIKVFCEYGISWNTTSYNIIIY 266

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           + C+   V EA  L   M  + ST   P   +Y+ +I        +++   L+  M   G
Sbjct: 267 SLCRLGKVKEAHRLLMQMDFRSST---PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG 323

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P+  TY  ++  +C  GK  EA K L EM ++   PD V Y   +       +   A 
Sbjct: 324 LKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTAN 383

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELG---EPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           + +  M+     P   TY  LI  + + G   EP   F   HEM  RG   D  TY  +I
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF---HEMISRGLKPDEVTYTTLI 440

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           D      ++  A  L  E+V  G+      + + +  L   G+L   ++L D MRK
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 25/269 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            P++    +L+DALCK G +  A+                 N+LG+ T E     G  P+
Sbjct: 339 NPDVYTYTILIDALCKEGKLKEAK-----------------NLLGVMTKE-----GVKPN 376

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TY+T +D +C    V  A  +F  M     T  +P+  +Y IMI  L +   ++E  +
Sbjct: 377 VVTYSTLMDGYCLVGEVHNAKQIFHAMV---QTEVNPSVCSYNIMINGLCKGKSVDEAMN 433

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  M++   +P+  TY  +++G+C +G++  A   ++E+ ++G P D++TY   L  LC
Sbjct: 434 LLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLC 493

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            N+N D+A+ L+ +M E G  P+  TY  LI    +      A + +  +  +GC  DV 
Sbjct: 494 KNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVY 553

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           TY VMI GL     ++EA  +  ++ + G
Sbjct: 554 TYNVMIGGLCKEGMLDEALAMKSKMEDNG 582



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           LL+ LCK G    A  + + ++++  +P+   YN +                  EM   G
Sbjct: 243 LLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRG 302

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TY+T I  FC A  +  A  L   M  K     +P   TY I+I AL +  +++
Sbjct: 303 IFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNI---NPDVYTYTILIDALCKEGKLK 359

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +LLG M   G  P+V TY  +++G CL G+V  A +    M      P + +YN  +
Sbjct: 360 EAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMI 419

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K+ DEA+ L   M+     P+  TYN LI    + G    A +   E+  RG  
Sbjct: 420 NGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQP 479

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            DV TY  ++DGL     +++A  L  ++  +G++
Sbjct: 480 ADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQ 514



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 38/255 (14%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+ M + P    +   + +  K +    A  L + M  KG     P   T +I+I     
Sbjct: 123 MLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGI---EPDLVTLSILINCFCH 179

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP----- 339
             +M   FS+LG ++  G  P+      +++G+CL G+V+++  F +++  +G+      
Sbjct: 180 LGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVS 239

Query: 340 ------------------------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
                                         PD+V YN  +  LC +K  +EA   Y  M 
Sbjct: 240 YGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMN 299

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G +P V TY+ LI  +   G+  GAF   +EM  +    DV TY ++ID L    K++
Sbjct: 300 SRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLK 359

Query: 430 EACFLLEEVVNKGLK 444
           EA  LL  +  +G+K
Sbjct: 360 EAKNLLGVMTKEGVK 374



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 25/198 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P     N L+D LCK G +  A                      +  ++E+   G   D 
Sbjct: 445 PNTVTYNSLIDGLCKSGRITSA----------------------LDLMKELHHRGQPADV 482

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY + +D  CK + + +A  LF  M+ +G     P   TY  +I  L +  R++    L
Sbjct: 483 ITYTSLLDGLCKNQNLDKAIALFMKMKERG---IQPNKYTYTALIDGLCKGARLKNAQKL 539

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
             H++  GC  DV TY  ++ G+C  G ++EA     +M + G  PD VT+   ++ L +
Sbjct: 540 FQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFE 599

Query: 355 NKNGDEALRLYGRMIEVG 372
               D+A +L   MI  G
Sbjct: 600 KDENDKAEKLLHEMIAKG 617



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 1/213 (0%)

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
           ++P+   +  ++ +LV+        SL   M   G  PD+ T   ++   C  G++  ++
Sbjct: 128 NTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSF 187

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             L ++   GY P+ +     +K LC      ++L  + +++  G   +  +Y  L++  
Sbjct: 188 SVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGL 247

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            ++GE   A +    ++ R    DV  Y  +IDGL     V EA     E+ ++G+    
Sbjct: 248 CKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDV 307

Query: 448 RKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNP 479
             + + +    + G L GA   L++   K  NP
Sbjct: 308 ITYSTLICGFCLAGQLMGAFSLLNEMTLKNINP 340


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 155/357 (43%), Gaps = 46/357 (12%)

Query: 164 QYTEK-IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           ++ EK +K K  P +   ++ ++ L K   +D A  + K +      PN   YN L    
Sbjct: 312 RFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGY 371

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++  ++M+  G +P++ T N+ I  FCK+  + +A ++ E M  +G  I+ 
Sbjct: 372 CKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQ 431

Query: 270 --------------------------------PTAKTYAIMIVALVQNDRMEECFSLLGH 297
                                           P       ++  L +  +  E   L   
Sbjct: 432 GSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCR 491

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++  G +P++ T   ++ G+C AG ++E  K L +M  +G   D +TYN  +   C    
Sbjct: 492 LLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGK 551

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             E   L   M++ G  P + T+N+L+       + D A   WHE  K G   +V TY V
Sbjct: 552 VKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGV 611

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           MIDG    +KVEE   LL E+V+K L+L    ++S +    + G++ A  +L D M+
Sbjct: 612 MIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMK 668



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 142/315 (45%), Gaps = 22/315 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKP----NANTYNIL------------G 218
           P I   N L+  LCK G  +  ET+ K +++ ++     +  TYN L            G
Sbjct: 499 PNIVTSNALIHGLCKAG--NMQETL-KLLRDMLERGLVFDRITYNTLISGCCKEGKVKEG 555

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +  EEM++ G  PD +T+N  +   C A  + EA+ L+   +  G     P   TY +M
Sbjct: 556 FELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV---PNVYTYGVM 612

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I    + +++EE  +LL  +++     +   Y  ++   C+ G +  A++  ++M ++G 
Sbjct: 613 IDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGV 672

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
                TY+  +  LC+    D+A  L   M + G  P+V  Y  +I  Y +LG+ +    
Sbjct: 673 LLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNI 732

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              EM       +  TY +MIDG     K +EA  LL E+  KG+      ++++   L 
Sbjct: 733 VLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLC 792

Query: 459 VIGDLGAIHKLSDHM 473
             G +    K+ D M
Sbjct: 793 KEGKVEEAFKVCDEM 807



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 115/270 (42%), Gaps = 20/270 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETI---CKRVKNKVKPNANTYNIL------ 217
           E +K   QP+I   NLLL  LC    +D A  +   CK  KN   PN  TY ++      
Sbjct: 561 EMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECK--KNGYVPNVYTYGVMIDGYCK 618

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G   L E++      ++  YN+ I  +C    +  A  L + M+++G  +S   
Sbjct: 619 ANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLS--- 675

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY+ ++  L     +++   LL  M   G LP+V  Y  ++ G    G++ +    L+
Sbjct: 676 CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQ 735

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM +    P+  TY   +   C      EA +L   M E G  P   TYN   +   + G
Sbjct: 736 EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEG 795

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + + AF+   EM       D  TY  +IDG
Sbjct: 796 KVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 3/227 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           + + G  P   T    + +  KA  + ++ ++++F+   G     P    ++ MI A  +
Sbjct: 212 LAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGII---PDVHLFSTMINAFCK 268

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R ++   L   M   G  P+V TY  ++ G+C +G+++EAY+F E+M  +   P ++T
Sbjct: 269 GHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLIT 328

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+ F+  L   +  DEA  +   M E+G  P+   YN LI  Y ++G    A +   +M 
Sbjct: 329 YSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDML 388

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            +G + +  T   +I G     ++ +A  +LEE++ +GL +    F 
Sbjct: 389 SKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFS 435



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 4/222 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           ++  G  P+  T N  I   CKA  + E   L   M  +G      T   Y  +I    +
Sbjct: 492 LLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRIT---YNTLISGCCK 548

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             +++E F L   M+  G  PD+ T+  +L G+C A K++EA +   E    GY P++ T
Sbjct: 549 EGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYT 608

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +   C     +E   L   ++      +   YN LI  Y   G  + AF    +M 
Sbjct: 609 YGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMK 668

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            RG      TY  ++ GL +   V++A  LL+E+  +GL LP
Sbjct: 669 SRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL-LP 709



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 130/301 (43%), Gaps = 26/301 (8%)

Query: 130 YKAKQFRLVCSMLDYMKRNNKVFVPV------DVLLMILKQYTEKIKVKTQPEINALNLL 183
           ++++ F +   M D+    N VF PV      D+L+ +     + +      ++ +L   
Sbjct: 159 FESRHFEIAQIMADF----NLVFEPVIGVKIADLLVHVYSTQFKHLGFGFAADVFSL--- 211

Query: 184 LDALCKCGLVDYAETICKRVKNKVKPN--ANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
              L K GL    +T    + + VK N    +Y +     L  +I     PD   ++T I
Sbjct: 212 ---LAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGII-----PDVHLFSTMI 263

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           + FCK     +A  LF  M   G    +P   TY  +I  L ++ R++E +     M+  
Sbjct: 264 NAFCKGHREDDAIGLFSKMEKLGV---APNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKE 320

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
              P + TY   + G+    K++EA   L+EM   G+ P+ V YN  +   C   N  EA
Sbjct: 321 KVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEA 380

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           L++   M+  G  P+  T N LI  + +  +   A     EM  RG   +  ++ ++I+ 
Sbjct: 381 LKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINW 440

Query: 422 L 422
           L
Sbjct: 441 L 441


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 132/290 (45%), Gaps = 22/290 (7%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVD----YAETICKRVKNKVKPNANTYNIL-------- 217
           K +  P     N L+   C  G +D    Y E + +R    +     TYN+L        
Sbjct: 212 KGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQR---GIAMTVATYNLLMHALFMDA 268

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   LEEM + G +PD FTYN  I+ +CK     +A ++FE M  KG      TA 
Sbjct: 269 RASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGV---RATAV 325

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I    +  +++E   L    +  G  PDV  Y  ++   C  G +E AY+ + EM
Sbjct: 326 TYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEM 385

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             K  PPD +TYN  ++  C     DEA  L   M + G  P + +YN LIS Y   G+ 
Sbjct: 386 EKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDI 445

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             A     EM  +G    + TY  +I GL    + ++A  L++E+V KG+
Sbjct: 446 KDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGI 495



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 160/362 (44%), Gaps = 50/362 (13%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
            N++L  LC  G    A  + +++    +PNA TYN +             ++ + EM +
Sbjct: 119 FNIMLRHLCATGKPVRALELLRQMP---RPNAVTYNTVIAGFCARGRVQAALEVMREMRE 175

Query: 228 MGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP---------------- 270
            G  APD +TY T I  +CK   + +A  +F+ M TKG    S                 
Sbjct: 176 RGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKL 235

Query: 271 -----------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
                            T  TY +++ AL  + R  + +++L  M  +G  PDV TY  +
Sbjct: 236 DVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNIL 295

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C  G  ++A +  EEM  KG     VTY   + V        E  RL+   ++ G 
Sbjct: 296 INGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGI 355

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P V  YN LI+ +   G+ + A+E   EM+K+    D  TY  ++ G     +++EA  
Sbjct: 356 RPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEART 415

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR-KFYNPVIARRLALNQKRV 492
           L++E+  +G++     +++ +   S+ GD+    ++ D M  K +NP +    AL Q   
Sbjct: 416 LIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLC 475

Query: 493 RI 494
           +I
Sbjct: 476 KI 477


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 178/402 (44%), Gaps = 45/402 (11%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR 147
           L R Q +   A   F WA  Q NY+  P  ++ ++  L+    +A  F    SML  +++
Sbjct: 65  LLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLA----RAGSFD---SMLTLLRQ 117

Query: 148 NNKVFVPVD--VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN 205
            +   +PVD    L+ L+ Y     +    EIN L LL++        D+A         
Sbjct: 118 MHSSKIPVDESTFLIFLETYATSHHL--HAEINPLFLLMER-------DFA--------- 159

Query: 206 KVKPNANTYNILG-----------MQTLE-EMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            VKP+   YN+             ++TL  +M+     PD  T+N  I   CKA  +  A
Sbjct: 160 -VKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPA 218

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             + E M   G     P  KT+  ++   ++   +E    +   M+ SGC     +   +
Sbjct: 219 ILMLEDMPNYGL---RPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVL 275

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G+C  G++EEA +F+ E   +G+ PD VT+N  +  LC   +  + L +   M+E G 
Sbjct: 276 VNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGF 333

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
              V TYN LIS   +LGE D A E  H M  R C  +  TY  +I  L   + VE A  
Sbjct: 334 ELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATE 393

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           L   + +KG+      F+S +  L +  +     +L + M++
Sbjct: 394 LARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKE 435



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 30/285 (10%)

Query: 179 ALNLLLDALCKCGLVDYA-------ETICKRVKNKVKPNANTYNIL------------GM 219
           ++N+L++ LCK G ++ A       E  C        P+  T+N L            G+
Sbjct: 271 SVNVLVNGLCKEGRIEEALRFIYEEEGFC--------PDQVTFNALVNGLCRTGHIKQGL 322

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + ++ M++ G   D +TYN+ I   CK   + EA ++   M ++      P   TY  +I
Sbjct: 323 EMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDC---EPNTVTYNTLI 379

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L + + +E    L   + + G LPDV T+  +++G+CL    E A +  EEM  KG  
Sbjct: 380 GTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCD 439

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD  TY+  ++ LC  +   EAL L   M   GC  +V  YN LI    +      A + 
Sbjct: 440 PDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDI 499

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + +M+  G ++   TY  +I+GL    +VEEA  L+++++ +GLK
Sbjct: 500 FDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLK 544



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 132/290 (45%), Gaps = 16/290 (5%)

Query: 181 NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  LCK G +D A E +   V    +PN  TYN L              +    +  
Sbjct: 341 NSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTS 400

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  T+N+ I   C       A +LFE M+ KG     P   TY+I+I +L    R
Sbjct: 401 KGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGC---DPDEFTYSILIESLCSERR 457

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++E   LL  M  SGC  +V  Y  +++G+C   +V +A    ++M   G     VTYN 
Sbjct: 458 LKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNT 517

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC +K  +EA +L  +MI  G  P   TY  ++  + + G+   A +    M   G
Sbjct: 518 LINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNG 577

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           C  D+ TY  +I GL    +V+ A  LL  V  KG+ L  + ++  +  L
Sbjct: 578 CEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQAL 627



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P     N L+  LCK   V+ A  + + + +K V P+  T+N L             M+
Sbjct: 369 EPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAME 428

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM + G  PD FTY+  I++ C  R + EA  L + M   G    +     Y  +I 
Sbjct: 429 LFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGC---ARNVVVYNTLID 485

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +N+R+ +   +   M   G      TY  ++ G+C + +VEEA + +++M  +G  P
Sbjct: 486 GLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKP 545

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D  TY   LK  C   +   A  +   M   GC P + TY  LI    + G  D A +  
Sbjct: 546 DKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLL 605

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +  +G       Y  +I  L    + +EA  L  E++ KG
Sbjct: 606 RSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKG 647



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 131/290 (45%), Gaps = 17/290 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L+  LC     + A  + + +K K   P+  TY+IL             +  
Sbjct: 405 PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALML 464

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G A +   YNT ID  CK   V +A D+F+ M   G + SS    TY  +I  
Sbjct: 465 LKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSS---VTYNTLING 521

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+EE   L+  MI  G  PD  TY  +L+  C  G ++ A   ++ M   G  PD
Sbjct: 522 LCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPD 581

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTY   +  LC     D A +L   +   G   + Q YN +I    +      A   + 
Sbjct: 582 IVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFR 641

Query: 402 EMDKRGCAQDVDTYCVMIDGLFD-CSKVEEACFLLEEVVNKGLKLPYRKF 450
           EM ++G   DV TY ++  GL +    ++EA     E++ KG+   +  F
Sbjct: 642 EMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSF 691



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 17/213 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L++ LCK   V+ A  +  + +   +KP+  TY  +                ++ M  
Sbjct: 516 NTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTL 575

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  TY T I   CKA  V  A+ L   ++ KG  +   T + Y  +I AL +  R
Sbjct: 576 NGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVL---TPQAYNPVIQALCKRKR 632

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMC-LAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +E   L   M+  G  PDV TYK V  G+C   G ++EA  F  EM  KG  P+  ++ 
Sbjct: 633 TKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFG 692

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
              + LC     D  ++L   ++E G +   +T
Sbjct: 693 FLAEGLCSLSMEDTLIQLINMVMEKGRFSQSET 725


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 208/477 (43%), Gaps = 54/477 (11%)

Query: 7   VSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYD 66
           ++P+ +  A+    I  K+L +   ++P        E+ D  S   +++  I+      D
Sbjct: 16  LNPSSSSIAIFSTFI--KNLSTASEQLP--------ETLDKYSQSEEIWNVIVGRDGDRD 65

Query: 67  NMEKALDSLG-------VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYN 119
           + +     L        V L+   V  +L RF+ + + A     WA     + H   AY+
Sbjct: 66  SEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYD 125

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK------QYTEKIKV-- 171
           + +DIL     KAK++  +   ++ M R +K+ V ++ +  I++      ++ E + +  
Sbjct: 126 MAVDILG----KAKKWDRMKEFVERM-RGDKL-VTLNTVAKIMRRFAGAGEWEEAVGIFD 179

Query: 172 -----KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
                  +    ++NLLLD LCK   V+ A  +  ++K+ + PNA+T+NI          
Sbjct: 180 RLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANR 239

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               + T++EM   G  P   +Y T I  +C+     +  ++   M   G   S P + T
Sbjct: 240 VEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANG---SPPNSIT 296

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEM 333
           Y  ++ +L      EE   +   M  SGC PD   Y  ++  +  AG++EEA + F  EM
Sbjct: 297 YTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEM 356

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGE 392
              G   +  TYN  + + C +   D+A+ L   M     C P V TY  L+   F+ G+
Sbjct: 357 PELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGD 416

Query: 393 PDGAFETWHEM-DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                +   EM  K   + D  TY  +I  L   +  E A  L EE++++ +   +R
Sbjct: 417 VVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 473



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 43/378 (11%)

Query: 38  CKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL-GVPLTT-DSVVGVLQRF---- 91
           CK    SSD+  D+A     I+  +  +D M++ ++ + G  L T ++V  +++RF    
Sbjct: 114 CKGHKHSSDAY-DMAV---DILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAG 169

Query: 92  QFEEKIA-FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNN 149
           ++EE +  F      G + N      + NL++D L   K + +Q R+V   L  ++  N 
Sbjct: 170 EWEEAVGIFDRLGEFGLEKNTE----SMNLLLDTLCKEK-RVEQARVVLLQLKSHITPNA 224

Query: 150 KVF-------VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK-CGLVDYAETICK 201
             F          + +   L    E      +P + +   ++   C+    +   E + +
Sbjct: 225 HTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSE 284

Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
              N   PN+ TY  +             ++    M + G  PD+  YN  I T  +A  
Sbjct: 285 MEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344

Query: 250 VTEAADLFEF-MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDV 307
           + EA  +F   M   G +I++ T   Y  MI     +D  ++   LL  M +S  C PDV
Sbjct: 345 LEEAERVFRVEMPELGVSINTST---YNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDV 401

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            TY+ +L      G V E  K L+EM  K +   D  TY   ++ LC     + A  L+ 
Sbjct: 402 HTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFE 461

Query: 367 RMIEVGCWPSVQTYNMLI 384
            MI     P  +T  +L+
Sbjct: 462 EMISQDITPRHRTCLLLL 479


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 164/349 (46%), Gaps = 23/349 (6%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S+L+   R ++++   D L M    +   +++  +P +   N ++D LCK   VD A  +
Sbjct: 156 SLLNGFCRGDRIY---DALYM----FDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDL 208

Query: 200 CKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
             R++ + ++P+A TYN L              + +  M +    PD FT+N  ID   K
Sbjct: 209 LNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVK 268

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              ++EA +L+E M  +      P   TY+++I  L    R++E   + G M++ GC PD
Sbjct: 269 EGRISEAEELYEEMIRRSL---DPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPD 325

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V TY  ++ G C + KVE   K   EM  +G   + VTY   ++  C     + A  ++ 
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFK 385

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+  G  P++ TYN+L+    + G+ + A     +M K G   D+ TY ++I G+    
Sbjct: 386 WMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAG 445

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +V +A  L   +  KGL      + + ++ L   G  G    L   M++
Sbjct: 446 EVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKE 494



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 181 NLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+LL+  C+C  +  A + + K +K   +P+  T+  L             +   + M++
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVE 179

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           MG+ P+   YNT ID  CK++ V  A DL   M   G     P A TY  +I  L  + R
Sbjct: 180 MGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGI---RPDAVTYNSLISGLCNSGR 236

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            ++   ++  M      PDV T+  +++     G++ EA +  EEM  +   PDIVTY+ 
Sbjct: 237 WDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSL 296

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC     DEA +++G M+  GC+P V TY++LI+ Y +  + +   + + EM +RG
Sbjct: 297 LIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEA 431
             ++  TY V+I G     K+  A
Sbjct: 357 VVRNTVTYTVLIQGYCRAGKLNVA 380



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 222 LEEMIQMGHAPDNF-TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           L E +QM   P N  T N  ++ FC+   ++ A      M   G     P   T+  ++ 
Sbjct: 103 LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGH---EPDIVTFGSLLN 159

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              + DR+ +   +   M+  G  P+V  Y  +++G+C + +V+ A   L  M   G  P
Sbjct: 160 GFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRP 219

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTYN  +  LC++   D+A R+   M +   +P V T+N LI    + G    A E +
Sbjct: 220 DAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELY 279

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            EM +R    D+ TY ++I GL   S+++EA  +   +V+KG
Sbjct: 280 EEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG 321



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 103/225 (45%), Gaps = 16/225 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------ 217
           Y E I+    P+I   +LL+  LC    +D AE +    V     P+  TY+IL      
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+   EM Q G   +  TY   I  +C+A  +  A ++F++M   G     P 
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGV---PPN 395

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY +++  L  N ++E+   +L  M  SG   D+ TY  ++ GMC AG+V +A+    
Sbjct: 396 IITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYC 455

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            +  KG  PDI TY   +  L       EA  L+ +M E G  P+
Sbjct: 456 SLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 79/170 (46%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T  I++    +  ++    S LG M+  G  PD+ T+  +L G C   ++ +A    + M
Sbjct: 118 TCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRM 177

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY P++V YN  +  LC +K  D AL L  RM   G  P   TYN LIS     G  
Sbjct: 178 VEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRW 237

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A      M KR    DV T+  +ID      ++ EA  L EE++ + L
Sbjct: 238 DDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL 287



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 69/158 (43%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++++   L  HM+    LP ++ +  +L  +    K +      E+M   G P ++ T N
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L   C       AL   G+M+++G  P + T+  L++ +        A   +  M + 
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           G   +V  Y  +IDGL    +V+ A  LL  +   G++
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIR 218


>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 610

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 175/407 (42%), Gaps = 42/407 (10%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDN---YAHEPLAYNLMIDILSSTK-----------YKAK 133
           L R Q + K+A   F       N   + +  L Y+LMI  L   K           +K  
Sbjct: 17  LLRLQEDPKLALHLFQHPNSNPNPKPFRYSLLCYDLMITKLGRAKMFHEMEQILLQFKT- 75

Query: 134 QFRLV------CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
           Q RLV      C+++ +  R     +P + L    K + E    + Q  I + N LL+ L
Sbjct: 76  QTRLVAKEPLFCNIITFYGRAG---LPQNAL----KMFDEMPLYRCQRTIKSYNTLLNVL 128

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNF 235
             C   D        +K  VKP+  T+NI+             ++ L+EM      P+  
Sbjct: 129 MICKEFDVMREHFVNIKRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEMKNRDLVPNQV 188

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           T+ T I   C    + EA  L ++M         P    YA +I  L     +     L 
Sbjct: 189 TFGTLIYGLCLNLKLKEAFKLKDYMVNVHGL--CPNEYVYATLIKGLCAVGELSFALRLK 246

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M   G   D + Y  ++ G+   G+ +E +  L EM  KG   D VTYN  +   C +
Sbjct: 247 EEMERDGVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCKADTVTYNVMINGFCKD 306

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           K+ + A ++   M+E  C P V +YN+++    + G+   A + + +M +RGCA DV +Y
Sbjct: 307 KDFETAYKILDEMMENRCKPDVISYNVILGELCKDGKWSEASDLFEDMPRRGCAPDVVSY 366

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
            ++ DGL D  + ++A F+L+E+V KG          ++ +L   GD
Sbjct: 367 RIVFDGLSDAMEFKDAAFILDEMVFKGFAPRSSSICKFINRLCQNGD 413



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 17/261 (6%)

Query: 236 TYNTAIDTF--CKARMVTEAADLFEFMRTKGSTIS---SPTAKTYAIMIVALVQNDRMEE 290
           +YNT ++    CK          F+ MR     I     P   T+ IMI  L  + R+++
Sbjct: 120 SYNTLLNVLMICKE---------FDVMREHFVNIKRHVKPDGCTFNIMIRGLCSDGRVDD 170

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN-KGYPPDIVTYNCFL 349
              +L  M N   +P+  T+  ++ G+CL  K++EA+K  + M N  G  P+   Y   +
Sbjct: 171 ALKVLDEMKNRDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLI 230

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           K LC       ALRL   M   G       Y+ LIS  F++G  D  F    EM+ +GC 
Sbjct: 231 KGLCAVGELSFALRLKEEMERDGVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCK 290

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            D  TY VMI+G       E A  +L+E++    K     ++  L +L   G       L
Sbjct: 291 ADTVTYNVMINGFCKDKDFETAYKILDEMMENRCKPDVISYNVILGELCKDGKWSEASDL 350

Query: 470 SDHM-RKFYNP-VIARRLALN 488
            + M R+   P V++ R+  +
Sbjct: 351 FEDMPRRGCAPDVVSYRIVFD 371



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 49/300 (16%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-- 217
           +++++   IK   +P+    N+++  LC  G VD A  +   +KN+ + PN  T+  L  
Sbjct: 136 VMREHFVNIKRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEMKNRDLVPNQVTFGTLIY 195

Query: 218 GM---QTLEEMIQM--------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-- 264
           G+     L+E  ++        G  P+ + Y T I   C    ++ A  L E M   G  
Sbjct: 196 GLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGLCAVGELSFALRLKEEMERDGVK 255

Query: 265 ------STISSPTAK------------------------TYAIMIVALVQNDRMEECFSL 294
                 ST+ S   K                        TY +MI    ++   E  + +
Sbjct: 256 VDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCKADTVTYNVMINGFCKDKDFETAYKI 315

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M+ + C PDV +Y  +L  +C  GK  EA    E+M  +G  PD+V+Y      L D
Sbjct: 316 LDEMMENRCKPDVISYNVILGELCKDGKWSEASDLFEDMPRRGCAPDVVSYRIVFDGLSD 375

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                +A  +   M+  G  P   +    I+   + G+ D     W  ++  G    +DT
Sbjct: 376 AMEFKDAAFILDEMVFKGFAPRSSSICKFINRLCQNGDED---LVWSVLNCLGKINAIDT 432


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 141/313 (45%), Gaps = 19/313 (6%)

Query: 175 PEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N+LL A CK  G     E I        +PN  TYN++              + 
Sbjct: 196 PDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQAREL 255

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  +   G  P+   YNT +  FC      +A ++ + M  +      P   T  ++I  
Sbjct: 256 LNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENC---PPNEATLNVIINT 312

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   +++    L  M   GC  +V TY  V+ GMC  G V+ A + L  M + G  PD
Sbjct: 313 LCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPD 372

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IVTYN  LK LC     ++A  L  +M +    P   T+N +IS + + G    AFE + 
Sbjct: 373 IVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFK 432

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSV 459
           +M ++GC  +  TY  +I GL    K+E+A  LL E+ NKG      YR     L +   
Sbjct: 433 QMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDK 492

Query: 460 IGD-LGAIHKLSD 471
           I + +  +HKL D
Sbjct: 493 IEEVVQVVHKLQD 505



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 158 LLMILKQYTEKI-KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
           LL  +  Y EK+ K      +   N ++  +C+ G VD A  +   +++   KP+  TYN
Sbjct: 318 LLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYN 377

Query: 216 IL--GMQTL-------EEMIQMGHA---PDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            +  G+ +        E MI+M      PDN T+NT I  +C+  ++ +A ++F+ M  K
Sbjct: 378 TVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEK 437

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G    +P + TY+ +I  L +  +ME+   LL  M N G   D   Y+ + E +    K+
Sbjct: 438 GC---NPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRVLTESLNKEDKI 493

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           EE  + + ++ + G  P  V YN  L  LC N   D A+ +   M+  GC P   TY +L
Sbjct: 494 EEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIIL 553

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           I   F     +G  +   E+  R C++DV
Sbjct: 554 IEGLFY----EGYSKEARELLSRLCSRDV 578



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 23/291 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVD----YAETICKRVKNKVKPNANTYN--ILGM- 219
           E ++    P    LN++++ LC+ GL+     Y E   K  K+    N  TYN  I GM 
Sbjct: 293 EMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLE---KMSKHGCTANVVTYNAVISGMC 349

Query: 220 ---------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                    + L  M   G  PD  TYNT +   C A    +A +L   M         P
Sbjct: 350 EQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRL---P 406

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              T+  +I    Q   + + F +   M   GC P+ +TY  ++ G+  AGK+E+A + L
Sbjct: 407 DNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELL 466

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM NKG+  D + Y    + L      +E +++  ++ + G  P    YN ++      
Sbjct: 467 NEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRN 525

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           G+ D A +   +M   GC  D  TY ++I+GLF     +EA  LL  + ++
Sbjct: 526 GKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLCSR 576



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 3/241 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY   +D +C+A ++ +A  +   M      + + +A  +  +I AL +  R+ +   +L
Sbjct: 130 TYGALVDGYCRAGLLEDARRVVGGMPAH---VQASSAYAHNPLIHALCERGRVADALVVL 186

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+  GC PDV TY  +L+  C      +A + ++ M  +G  P+ VTYN  +  +C  
Sbjct: 187 DGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCRE 246

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
            + D+A  L   +   GC P+   YN ++  +  +     A E   EM +  C  +  T 
Sbjct: 247 GDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATL 306

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            V+I+ L     +++    LE++   G       +++ +  +   G++ +  +L  +M+ 
Sbjct: 307 NVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQS 366

Query: 476 F 476
           F
Sbjct: 367 F 367



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 7/193 (3%)

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS--TYK 311
            DL   +R  GS+   P       ++  L +  R  +   ++       C P+ +  TY 
Sbjct: 78  GDLDAALRLVGSSPRPPDVPLANRLVRDLCRRGRPADAARVV-----EACGPEATAATYG 132

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +++G C AG +E+A + +  M           +N  +  LC+     +AL +   M+  
Sbjct: 133 ALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCR 192

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC P V TYN+L+    +      A E    M   GC  +  TY V+ID +     V++A
Sbjct: 193 GCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQA 252

Query: 432 CFLLEEVVNKGLK 444
             LL  + ++G K
Sbjct: 253 RELLNSLPSRGCK 265


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 208/477 (43%), Gaps = 54/477 (11%)

Query: 7   VSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYD 66
           ++P+ +  A+    I  K+L +   ++P        E+ D  S   +++  I+      D
Sbjct: 80  LNPSSSSIAIFSTFI--KNLSTASEQLP--------ETLDEYSQSEEIWNVIVGRDGDRD 129

Query: 67  NMEKALDSLG-------VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYN 119
           + +     L        V L+   V  +L RF+ + + A     WA     + H   AY+
Sbjct: 130 SEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYD 189

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK------QYTEKIKV-- 171
           + +DIL     KAK++  +   ++ M R +K+ V ++ +  I++      ++ E + +  
Sbjct: 190 MAVDILG----KAKKWDRMKEFVERM-RGDKL-VTLNTVAKIMRRFAGAGEWEEAVGIFD 243

Query: 172 -----KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
                  +    ++NLLLD LCK   V+ A  +  ++K+ + PNA+T+NI          
Sbjct: 244 RLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANR 303

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               + T++EM   G  P   +Y T I  +C+     +  ++   M   G   S P + T
Sbjct: 304 VEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANG---SPPNSIT 360

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEM 333
           Y  ++ +L      EE   +   M  SGC PD   Y  ++  +  AG++EEA + F  EM
Sbjct: 361 YTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEM 420

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGE 392
              G   +  TYN  + + C +   D+A+ L   M     C P V TY  L+   F+ G+
Sbjct: 421 PELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGD 480

Query: 393 PDGAFETWHEM-DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                +   EM  K   + D  TY  +I  L   +  E A  L EE++++ +   +R
Sbjct: 481 VVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 537



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 43/378 (11%)

Query: 38  CKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL-GVPLTT-DSVVGVLQRF---- 91
           CK    SSD+  D+A     I+  +  +D M++ ++ + G  L T ++V  +++RF    
Sbjct: 178 CKGHKHSSDAY-DMAV---DILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAG 233

Query: 92  QFEEKIA-FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNN 149
           ++EE +  F      G + N      + NL++D L   K + +Q R+V   L  ++  N 
Sbjct: 234 EWEEAVGIFDRLGEFGLEKNTE----SMNLLLDTLCKEK-RVEQARVVLLQLKSHITPNA 288

Query: 150 KVF-------VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK-CGLVDYAETICK 201
             F          + +   L    E      +P + +   ++   C+    +   E + +
Sbjct: 289 HTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSE 348

Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
              N   PN+ TY  +             ++    M + G  PD+  YN  I T  +A  
Sbjct: 349 MEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 408

Query: 250 VTEAADLFEF-MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDV 307
           + EA  +F   M   G +I++    TY  MI     +D  ++   LL  M +S  C PDV
Sbjct: 409 LEEAERVFRVEMPELGVSINT---STYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDV 465

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            TY+ +L      G V E  K L+EM  K +   D  TY   ++ LC     + A  L+ 
Sbjct: 466 HTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFE 525

Query: 367 RMIEVGCWPSVQTYNMLI 384
            MI     P  +T  +L+
Sbjct: 526 EMISQDITPRHRTCLLLL 543


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 208/477 (43%), Gaps = 54/477 (11%)

Query: 7   VSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYD 66
           ++P+ +  A+    I  K+L +   ++P        E+ D  S   +++  I+      D
Sbjct: 16  LNPSSSSIAIFSTFI--KNLSTASEQLP--------ETLDEYSQSEEIWNVIVGRDGDRD 65

Query: 67  NMEKALDSLG-------VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYN 119
           + +     L        V L+   V  +L RF+ + + A     WA     + H   AY+
Sbjct: 66  SEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYD 125

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK------QYTEKIKV-- 171
           + +DIL     KAK++  +   ++ M R +K+ V ++ +  I++      ++ E + +  
Sbjct: 126 MAVDILG----KAKKWDRMKEFVERM-RGDKL-VTLNTVAKIMRRFAGAGEWEEAVGIFD 179

Query: 172 -----KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
                  +    ++NLLLD LCK   V+ A  +  ++K+ + PNA+T+NI          
Sbjct: 180 RLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANR 239

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               + T++EM   G  P   +Y T I  +C+     +  ++   M   G   S P + T
Sbjct: 240 VEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANG---SPPNSIT 296

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEM 333
           Y  ++ +L      EE   +   M  SGC PD   Y  ++  +  AG++EEA + F  EM
Sbjct: 297 YTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEM 356

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGE 392
              G   +  TYN  + + C +   D+A+ L   M     C P V TY  L+   F+ G+
Sbjct: 357 PELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGD 416

Query: 393 PDGAFETWHEM-DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                +   EM  K   + D  TY  +I  L   +  E A  L EE++++ +   +R
Sbjct: 417 VVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 473



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 43/378 (11%)

Query: 38  CKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL-GVPLTT-DSVVGVLQRF---- 91
           CK    SSD+  D+A     I+  +  +D M++ ++ + G  L T ++V  +++RF    
Sbjct: 114 CKGHKHSSDAY-DMAV---DILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAG 169

Query: 92  QFEEKIA-FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNN 149
           ++EE +  F      G + N      + NL++D L   K + +Q R+V   L  ++  N 
Sbjct: 170 EWEEAVGIFDRLGEFGLEKNTE----SMNLLLDTLCKEK-RVEQARVVLLQLKSHITPNA 224

Query: 150 KVF-------VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK-CGLVDYAETICK 201
             F          + +   L    E      +P + +   ++   C+    +   E + +
Sbjct: 225 HTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSE 284

Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
              N   PN+ TY  +             ++    M + G  PD+  YN  I T  +A  
Sbjct: 285 MEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344

Query: 250 VTEAADLFEF-MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDV 307
           + EA  +F   M   G +I++ T   Y  MI     +D  ++   LL  M +S  C PDV
Sbjct: 345 LEEAERVFRVEMPELGVSINTST---YNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDV 401

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            TY+ +L      G V E  K L+EM  K +   D  TY   ++ LC     + A  L+ 
Sbjct: 402 HTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFE 461

Query: 367 RMIEVGCWPSVQTYNMLI 384
            MI     P  +T  +L+
Sbjct: 462 EMISQDITPRHRTCLLLL 479


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 145/314 (46%), Gaps = 31/314 (9%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           ++K   E I+   +P++   N ++  +C+ GLVD A    + +  K              
Sbjct: 44  VMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAK-------------- 89

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                   G+APD  +Y+  +      R   +   L   M +KG     P   TY+I+I 
Sbjct: 90  --------GYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGC---EPNVVTYSILIS 138

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L ++ ++EE  SLL  M   G  PD  +Y  ++   C   +V+ A +FLE M + G  P
Sbjct: 139 SLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLP 198

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DIV YN  L  LC N   DEAL+++ ++ EVGC P+V +YN L S  +  G    A    
Sbjct: 199 DIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMI 258

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM  +    D  TY  +I  L   + V++A  LL ++ +   +     ++  L+ LS  
Sbjct: 259 LEMLSKDIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLS-- 316

Query: 461 GDLGAIHKLSDHMR 474
                +H++SD + 
Sbjct: 317 ----KVHRISDAIE 326



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 91/169 (53%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I+I A +    +++   LL  MI SG  PD+  +  V+ GMC  G V+ A++F+  +
Sbjct: 27  TYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYI 86

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KGY PD+++Y+  L+ L + +  ++  +L   M+  GC P+V TY++LIS     G+ 
Sbjct: 87  SAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKV 146

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + A      M ++G   D  +Y  +I      S+V+ A   LE +++ G
Sbjct: 147 EEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDG 195



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%)

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           P  +VTY   ++        D+ ++L   MIE G  P +  +N ++      G  D AFE
Sbjct: 22  PISLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFE 81

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               +  +G A DV +Y +++ GL +  K E+   L+ ++++KG
Sbjct: 82  FIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKG 125


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 19/290 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GMQT---------- 221
           P I   N++++ +C+ G VD A+ I  R+ +   +P+  +Y  +  G+            
Sbjct: 220 PNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVL 279

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+     P+  T++  +  FC+  MV  A  + + M   G T   P      I+I A
Sbjct: 280 FAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCT---PNTTLCNIVINA 336

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +  R+++ +  L +M   GC PD  +Y  VL G+C AG+ E A + L EM  K  PP+
Sbjct: 337 ICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN 396

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N F+ +LC     ++A++L   M E GC   + TYN L+  +   G  D A E ++
Sbjct: 397 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFN 456

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            +    C  +  TY  ++ GL    +++ A  LL E++ K   L    F+
Sbjct: 457 NLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFN 503



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 19/307 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           + E +  K  P     ++L+   C+ G+V+ A  + +++ ++   PN    NI+      
Sbjct: 280 FAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICK 339

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M   G  PD  +Y T +   C+A     A +L   M  K      P 
Sbjct: 340 QGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNC---PPN 396

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+   I  L Q   +E+   L+  M   GC   + TY  ++ G C+ G+V+ A   LE
Sbjct: 397 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSA---LE 453

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
              N    P+ +TY   L  LC  +  D A  L   MI+  C  +  T+N+L+S + + G
Sbjct: 454 LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKG 513

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             + A E  ++M + GC  ++ T+  ++DG+      EEA  LL  +V+KG+ L    + 
Sbjct: 514 FVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYS 573

Query: 452 SYLMQLS 458
           S +  LS
Sbjct: 574 SVVDVLS 580



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 124/252 (49%), Gaps = 3/252 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+Q G  P   TY   ++  CK+    EA ++ + MR KG T   P   TY ++I  + +
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCT---PNIVTYNVIINGMCR 234

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+++   +L  + + G  PD+ +Y  VL+G+C A + ++      EM +K   P+ VT
Sbjct: 235 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 294

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           ++  ++  C     + A+++  +M + GC P+    N++I+   + G  D A++  + M 
Sbjct: 295 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 354

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
             GC  D  +Y  ++ GL    + E A  LL E+V K        F++++  L   G + 
Sbjct: 355 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIE 414

Query: 465 AIHKLSDHMRKF 476
              KL + M ++
Sbjct: 415 QAIKLIELMPEY 426



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 22/316 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANT 213
           V+  + +L+Q ++       P     N++++A+CK G VD A      +      P+  +
Sbjct: 308 VERAIQVLQQMSQH---GCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTIS 364

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y  +              + L EM++    P+  T+NT I   C+  ++ +A  L E M 
Sbjct: 365 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 424

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G ++      TY  ++       R++    L  ++    C P+  TY  +L G+C A 
Sbjct: 425 EYGCSVG---IVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAE 478

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +++ A + L EM  K  P + VT+N  +   C     +EA+ L  +M+E GC P++ T+N
Sbjct: 479 RLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFN 538

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+    +    + A E  H +  +G + D  TY  ++D L    + EEA  +L  V + 
Sbjct: 539 TLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDM 598

Query: 442 GLKLPYRKFDSYLMQL 457
           G++     ++  L  L
Sbjct: 599 GMRPKVGMYNKILFAL 614



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 42/311 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+  +   +L  LC+ G  ++A E + + V+    PN  T+N               ++ 
Sbjct: 360 PDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKL 419

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT---------- 271
           +E M + G +    TYN  +  FC    V  A +LF  +  + +TI+  T          
Sbjct: 420 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAER 479

Query: 272 -------------------AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
                              A T+ +++    Q   +EE   L+  M+  GC P++ T+  
Sbjct: 480 LDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 539

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +L+G+      EEA + L  + +KG   D +TY+  + VL      +EA+++   + ++G
Sbjct: 540 LLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMG 599

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P V  YN ++    +  E D A + +  M   GC  +  TY ++I+GL     ++EA 
Sbjct: 600 MRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAR 659

Query: 433 FLLEEVVNKGL 443
           ++L E+  KG+
Sbjct: 660 YVLSELYAKGV 670



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 118/283 (41%), Gaps = 15/283 (5%)

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           ++   +P+  TY +L             M  L+EM   G  P+  TYN  I+  C+   V
Sbjct: 179 LQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRV 238

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A ++   + + G     P   +Y  ++  L    R ++   L   M++  C+P+  T+
Sbjct: 239 DDAKEILNRLSSYGF---QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF 295

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++   C  G VE A + L++M   G  P+    N  +  +C     D+A      M  
Sbjct: 296 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 355

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC P   +Y  ++      G  + A E   EM ++ C  +  T+   I  L     +E+
Sbjct: 356 YGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 415

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           A  L+E +   G  +    +++ +    V G + +  +L +++
Sbjct: 416 AIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL 458


>gi|224081867|ref|XP_002306508.1| predicted protein [Populus trichocarpa]
 gi|222855957|gb|EEE93504.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 172/397 (43%), Gaps = 42/397 (10%)

Query: 78  PLTTDS--VVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQF 135
           PL  DS  V   L  +  + K A  FF W   +  + H    YN MIDIL     K  +F
Sbjct: 41  PLNLDSSTVFQTLSCYNNDWKRALDFFNWVETESQFQHTTETYNRMIDILG----KFFEF 96

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQ--------------YTEKIKVKTQPEINALN 181
            L   ++  M RNN    P      +L                Y +++K     +  +  
Sbjct: 97  DLSWDLIQRM-RNNPFSTPNHTTFRVLFHRYISAHLVNEAVSVYEDRLKEFGLKDETSYC 155

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM---------------QTLEEMI 226
           +L+DALC+   V  A  +C    N      N   I  M               +  EEM 
Sbjct: 156 ILVDALCEYKHVIEAHELCFGNNNNSINVRNITKIYNMILRGWFKMGWWGKCREFWEEMD 215

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           +     D  +Y+  +D  CK+    +A  L++ M++KG  +       Y  +I A+  ++
Sbjct: 216 RKEVCKDLHSYSIYMDILCKSGKPWKAVKLYKEMKSKGIKLD---VVAYNTVINAIGLSE 272

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            ++    +   M   GC P+V T   V++ +C  G+++EAYK L+EM      PD+ TY+
Sbjct: 273 GVDFVLRVYREMRELGCQPNVVTCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTYH 332

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
           CF + L   +   E L L+ +MIE G  P + TY ML+  +   G     F  W +M+K 
Sbjct: 333 CFFRCL---EKPKEILCLFDQMIENGVCPRMDTYVMLMRKFGRWGFLRPVFLVWKKMEKL 389

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           GC+ D   Y  +ID L     V+ A    EE++ KGL
Sbjct: 390 GCSPDEFAYNALIDALIQKGMVDMARKYDEEMMAKGL 426



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 132/306 (43%), Gaps = 23/306 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GM 219
           Q      N ++D L K    D +  + +R++N     PN  T+ +L             +
Sbjct: 77  QHTTETYNRMIDILGKFFEFDLSWDLIQRMRNNPFSTPNHTTFRVLFHRYISAHLVNEAV 136

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              E+ ++     D  +Y   +D  C+ + V EA +L  F     S       K Y +++
Sbjct: 137 SVYEDRLKEFGLKDETSYCILVDALCEYKHVIEAHELC-FGNNNNSINVRNITKIYNMIL 195

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +     +C      M       D+ +Y   ++ +C +GK  +A K  +EM +KG  
Sbjct: 196 RGWFKMGWWGKCREFWEEMDRKEVCKDLHSYSIYMDILCKSGKPWKAVKLYKEMKSKGIK 255

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            D+V YN  +  +  ++  D  LR+Y  M E+GC P+V T N +I +  E G    A++ 
Sbjct: 256 LDVVAYNTVINAIGLSEGVDFVLRVYREMRELGCQPNVVTCNTVIKLLCENGRIKEAYKM 315

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDC-SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
             EM +   A DV TY       F C  K +E   L ++++  G+  P  + D+Y+M + 
Sbjct: 316 LDEMPQSYIAPDVFTY----HCFFRCLEKPKEILCLFDQMIENGV-CP--RMDTYVMLMR 368

Query: 459 VIGDLG 464
             G  G
Sbjct: 369 KFGRWG 374



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 6/248 (2%)

Query: 232 PDNFTYNTAIDTF-CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           P N   +T   T  C       A D F ++ T+       T +TY  MI  L +    + 
Sbjct: 41  PLNLDSSTVFQTLSCYNNDWKRALDFFNWVETESQF--QHTTETYNRMIDILGKFFEFDL 98

Query: 291 CFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            + L+  M N+    P+ +T++ +      A  V EA    E+   +    D  +Y   +
Sbjct: 99  SWDLIQRMRNNPFSTPNHTTFRVLFHRYISAHLVNEAVSVYEDRLKEFGLKDETSYCILV 158

Query: 350 KVLCDNKNGDEALRL-YGRMIEVGCWPSV-QTYNMLISMYFELGEPDGAFETWHEMDKRG 407
             LC+ K+  EA  L +G         ++ + YNM++  +F++G      E W EMD++ 
Sbjct: 159 DALCEYKHVIEAHELCFGNNNNSINVRNITKIYNMILRGWFKMGWWGKCREFWEEMDRKE 218

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
             +D+ +Y + +D L    K  +A  L +E+ +KG+KL    +++ +  + +   +  + 
Sbjct: 219 VCKDLHSYSIYMDILCKSGKPWKAVKLYKEMKSKGIKLDVVAYNTVINAIGLSEGVDFVL 278

Query: 468 KLSDHMRK 475
           ++   MR+
Sbjct: 279 RVYREMRE 286


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E +++   P I     L+D LCK G +D A  +   ++ K ++ N   YN +      
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ ++EM   G  PD  TY T ID +C+   + +A  L + M  +G     PT
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGL---QPT 572

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ +++        +E+   LLG M+  G +PD  TY  +++  C+   +    K  +
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M N+G  PD  TYN  +K  C  +N  EA  LY  MIE G  P+V +YN LI  +++  
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKK 692

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A E + EM   G   D + Y   +D  ++   VE    L +E + K L
Sbjct: 693 KILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCL 744



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 16/293 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL---- 217
           K + E +  K  P+      L+    + G +++      + +   +KP+  TY  L    
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVY 443

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                         EM+QMG  P+  TY   ID  CK   +  A +L + MR KG  ++ 
Sbjct: 444 CKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN- 502

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
                Y  M+  + +   +E+   L+  M  +G  PD  TY  V++  C  G +++A+K 
Sbjct: 503 --VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKL 560

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L+EM ++G  P +VT+N  +   C     ++  RL G M+E G  P   TYN L+  +  
Sbjct: 561 LQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCI 620

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               +   + +  M  +G A D +TY ++I G      ++EA FL +E++ KG
Sbjct: 621 RNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 140/314 (44%), Gaps = 16/314 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P     N ++  LCK G    AE + + +   K+ P+   Y  L              +
Sbjct: 325 KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK 384

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+    +PD  TY T I  F +   V E  +LF  M ++G     P   TY  +I 
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGL---KPDEVTYTTLID 441

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   M   FSL   M+  G  P++ TY  +++G+C  G+++ A + L+EM  KG   
Sbjct: 442 VYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQL 501

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++  YN  +  +C   N ++A++L   M   G  P   TY  +I  Y  LG+ D A +  
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM  RG    V T+ V+++G      +E+   LL  ++ KG+      +++ + Q  + 
Sbjct: 562 QEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIR 621

Query: 461 GDLGAIHKLSDHMR 474
             +    K+   MR
Sbjct: 622 NSMNTTTKIYKRMR 635



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 14/296 (4%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           LLD L   GLV   ++ C    +++  N+    +     ++   + G + +  +YN  I 
Sbjct: 212 LLDKLLSYGLVVTVDS-CNAFLSRIANNSEGIEM----AIKVFCEYGISWNTTSYNIIIY 266

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           + C+   V EA  L   M  + ST   P   +Y+ +I        +++   L+  M   G
Sbjct: 267 SLCRLGKVKEAHRLLMQMDFRSST---PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG 323

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P+  TY  ++  +C  GK  EA K L EM ++   PD V Y   +       +   A 
Sbjct: 324 LKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTAN 383

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELG---EPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           + +  M+     P   TY  LI  + + G   EP   F   HEM  RG   D  TY  +I
Sbjct: 384 KWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF---HEMISRGLKPDEVTYTTLI 440

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           D      ++  A  L  E+V  G+      + + +  L   G+L   ++L D MRK
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 146/337 (43%), Gaps = 15/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVK 208
           K F     L   L  + +  K+   P++   N LL  LC    V  A  +  ++ +   +
Sbjct: 122 KCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCR 181

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  T+  L             +  L+ M++ G  P   TY T +D  CK      A DL
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDL 241

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M      I  P    Y+ +I +L ++ R  +  +L   M   G  PD+ TY  ++ G
Sbjct: 242 LRKMEEISHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C +G+  +A + L+EM  +   PD+VTYN  +          EA  LY  M+  G  P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TY+ +I  + +    D A   ++ M  +GC+ ++ T+  +IDG     ++++   LL 
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+   GL      +++ +    ++GDL A   L   M
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 17/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L  + +  +   +P +     L++ LC+ G +  A  +  R+ ++ ++P   TY  +   
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 218 ---------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                     +  L +M ++ H  P+   Y+  ID+ CK    ++A +LF  M+ KG   
Sbjct: 229 MCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF- 287

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  MIV    + R  +   LL  M+     PDV TY  ++      GK  EA 
Sbjct: 288 --PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  +EM  +G  P+ +TY+  +   C     D A  ++  M   GC P++ T+N LI  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 D   E  HEM + G   D  TY  +I G +    +  A  LL+E+++ GL
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P +   N L+D  C    +D   E + +  +  +  +  TYN L             + 
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
            L+EMI  G  PD  T +T +D  C    + +A ++F+ M+     + +        P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +  + 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+   +   C     D+ L L+  M   G   +  TY  LI  + ++G 
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ GL+   +++ A  +LE++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 27/303 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E +     P     + ++D  CK   +D AE +   +  K   PN  T+N L      
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+ L EM + G   D  TYNT I  F     +  A DL + M + G     P 
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL---CPD 464

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLA 320
             T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GK  EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             LI+ Y + G  D   E + EM +RG   +  TY  +I G      +  A  + +E+++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 441 KGL 443
            G+
Sbjct: 645 SGV 647



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 17/272 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GM 219
           QP       ++D +CK G    A  + ++++  + + PN   Y+ +              
Sbjct: 216 QPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM + G  PD FTYN+ I  FC +   ++A  L + M  +     SP   TY  +I
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI---SPDVVTYNALI 332

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A V+  +  E   L   M+  G +P+  TY  +++G C   +++ A      M  KG  
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++T+N  +   C  K  D+ + L   M E G      TYN LI  ++ +G+ + A + 
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             EM   G   D+ T   ++DGL D  K+++A
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 244 FCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           F + + + +A DLF + +R++      P+   +  ++  +V+ +R +   SL   M    
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSR----PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              D+ ++  +++  C   K+  A     ++   G  PD+VT+N  L  LC      EAL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L+ +M E  C P+V T+  L++     G    A      M + G      TY  ++DG+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y++ +  +  P++   N L+        ++YA  +  ++K + + PN  T+NIL      
Sbjct: 224 YSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCK 283

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++    PD  TYN+ +D +C    V +A D+F+ M + G       
Sbjct: 284 EGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVI---AN 340

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            + Y  M+    +   ++E  +L   M     +P+V TY  +++G+C  G++  A K ++
Sbjct: 341 VQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVD 400

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G PP+IVTY+  L  LC N + D+A+ L   + + G  P + TY +LI    + G
Sbjct: 401 EMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSG 460

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             + A   + ++  +G   DV  Y VMI G  D    ++A  LL ++ + G
Sbjct: 461 RLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNG 511



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 158/347 (45%), Gaps = 24/347 (6%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKV--FVPVDVLLMILKQYTEKI 169
           YN++ID +   K     F L   M+      D    N  +  F  V  L   +  + +  
Sbjct: 204 YNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMK 263

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL----------- 217
           K    P +   N+L+D  CK G V+ A+ +    +K+ +KP+  TYN L           
Sbjct: 264 KENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVN 323

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                 + M   G   +   Y T ++ FCK +MV EA +LFE MR +      P   TY+
Sbjct: 324 KAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKII---PNVVTYS 380

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L +  R+     L+  M + G  P++ TY  +L+ +C    V++A   L  + ++
Sbjct: 381 SLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQ 440

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD+ TY   +K LC +   ++A  ++  ++  G    V  Y ++I  + + G  D A
Sbjct: 441 GIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKA 500

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                +M+  GC  +  TY ++I  LF+  + + A  LL E++ +GL
Sbjct: 501 LALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G +  A  + KRV  K V+PNA  YN++                  +M+   
Sbjct: 172 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 231

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD FTYN  I  F     +  A DLF  M+ +     +P   T+ I++    +  ++ 
Sbjct: 232 ICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKEN---INPNVYTFNILVDGFCKEGKVN 288

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   +L  M+     PDV TY  +++G C   KV +A    + M + G   ++  Y   +
Sbjct: 289 DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMV 348

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  DEA+ L+  M      P+V TY+ LI    +LG    A +   EM  RG  
Sbjct: 349 NGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQP 408

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            ++ TY  ++D L     V++A  LL  + ++G++
Sbjct: 409 PNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIR 443



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 3/222 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G   D FT+N  I+ F +  + + +  +F  +  KG     PTA T+  +I  L
Sbjct: 85  QQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGY---HPTAITFNTLIKGL 141

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
                + +       ++  G   D  +Y  ++ G+C  G++  A + L+ +  K   P+ 
Sbjct: 142 CLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNA 201

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V YN  +  +C  K  ++A  LY +M+     P V TYN LIS +  + + + A + +++
Sbjct: 202 VMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNK 261

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           M K     +V T+ +++DG     KV +A  +L  ++   +K
Sbjct: 262 MKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIK 303



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 126/282 (44%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-------GMQTLE--- 223
           P     N +L +L K      A ++ ++++ N ++ +  T+NIL       G+ +L    
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118

Query: 224 --EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             ++++ G+ P   T+NT I   C    + +A    + +  +G  +   +   Y  +I  
Sbjct: 119 FAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVS---YGTLING 175

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+     LL  +      P+   Y  +++ MC A  V +A+    +M  K   PD
Sbjct: 176 LCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPD 235

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  +         + A+ L+ +M +    P+V T+N+L+  + + G+ + A     
Sbjct: 236 VFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLA 295

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M K     DV TY  ++DG    +KV +A  + + + + G+
Sbjct: 296 IMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGV 337



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   + +LDALCK   VD A  +   +K++ ++P+  TY IL                
Sbjct: 409 PNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNV 468

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+++  G+  D + Y   I  FC      +A  L   M   G     P AKTY ++I++
Sbjct: 469 FEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCI---PNAKTYELVILS 525

Query: 282 LVQNDRMEECFSLLGHMINSGCL 304
           L + D  +    LL  MI  G L
Sbjct: 526 LFEKDENDTAEKLLREMIVRGLL 548



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 2/209 (0%)

Query: 269 SPTAKTYAI--MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           +PT  T+    ++ +LV+        SL   M  +G   D  T+  ++      G    +
Sbjct: 56  NPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLS 115

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           +    ++  KGY P  +T+N  +K LC   +  +AL  + +++  G      +Y  LI+ 
Sbjct: 116 FSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLING 175

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             ++G    A +    +D +    +   Y ++ID +     V +A  L  ++V K +   
Sbjct: 176 LCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPD 235

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              +++ +   S +  L     L + M+K
Sbjct: 236 VFTYNALISGFSAVSKLNYAIDLFNKMKK 264



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%)

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +K   P    +N  L  L   K+   AL L+ +M   G      T+N+LI+ + +LG   
Sbjct: 54  HKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNS 113

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            +F  + ++ K+G      T+  +I GL     + +A    ++VV +G  L    + + +
Sbjct: 114 LSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLI 173

Query: 455 MQLSVIGDLGAIHKL 469
             L  +G + A  +L
Sbjct: 174 NGLCKVGRITAALQL 188


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  EEM +   A +  TYN  I   C++  V EA    E M   G    SP A TY  ++
Sbjct: 264 KVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGL---SPDAFTYGALM 320

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +  R++E  +LL  M  SG  P++  Y  +++G    GK  EA+  L+EM + G  
Sbjct: 321 NGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQ 380

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+ + Y+  ++ LC       A +L   MI+VG  P   TYN L+  +F+  + DGAFE 
Sbjct: 381 PNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFEL 440

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +EM   G   +V +Y +MI+GL    + +EA  LLEE++++GLK
Sbjct: 441 LNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLK 485



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 24/347 (6%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNNKVFVPVDV-------LLMILKQYTEK 168
           +Y +MI+ L       +   L+  M+ + +K N  ++ P+ +       + +  +   + 
Sbjct: 455 SYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKM 514

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
            K    P++   N L+  L   G ++ AE    +V K  + P+  TY+ L          
Sbjct: 515 TKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNL 574

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               Q L +M+  G  P+  TY   ++ + K+    + + + + M   G     P    Y
Sbjct: 575 EKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD---KPDNHIY 631

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I+I  L +++ ME  F +L  +  +G +PD+  Y  ++ G+C    +E+A   L+EM  
Sbjct: 632 GIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAK 691

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P IV YN  +   C + +   A  ++  ++  G  P+  TY  LI    + G+   
Sbjct: 692 EGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITD 751

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           AF+ + EM  RG A D   Y V+  G  D + +E+A FL EE+ N+G
Sbjct: 752 AFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 798



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 136/317 (42%), Gaps = 18/317 (5%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           LL  LK + E   +   P++   +  ++A CK    D A+ + + ++ +    N  TYN+
Sbjct: 226 LLWKLKGFMEGAGI--LPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNV 283

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +                 EEM+  G +PD FTY   ++  CK   + EA  L + M   G
Sbjct: 284 MISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSG 343

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P    Y  ++   ++  +  E F +L  MI++G  P+   Y  ++ G+C  G++ 
Sbjct: 344 L---KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLG 400

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A K L+EM   G  PD  TYN  ++      + D A  L   M   G  P+V +Y ++I
Sbjct: 401 RASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMI 460

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   + GE   A     EM   G   +   Y  +I G      +  AC  LE++    + 
Sbjct: 461 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVH 520

Query: 445 LPYRKFDSYLMQLSVIG 461
                ++S +  LS +G
Sbjct: 521 PDLFCYNSLIKGLSTVG 537



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 146/349 (41%), Gaps = 23/349 (6%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++D   +  K     D+L        E I    QP     + L+  LCK G +  A  +
Sbjct: 353 TLVDGFMKEGKTAEAFDIL-------KEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKL 405

Query: 200 CKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
            K  +K  ++P+  TYN L              + L EM   G  P+ ++Y   I+  C+
Sbjct: 406 LKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQ 465

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
                EA +L E M ++G     P A  YA +I+   +   +      L  M  +   PD
Sbjct: 466 NGESKEAGNLLEEMISEGL---KPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPD 522

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +  Y  +++G+   G++EEA ++  ++  +G  PD  TY+  +   C   N ++A +L  
Sbjct: 523 LFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLR 582

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           +M+  G  P+  TY  L+  YF+  + +        M   G   D   Y ++I  L    
Sbjct: 583 QMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSE 642

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +E A  +L EV   GL      + S +  L  I D+     L D M K
Sbjct: 643 NMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAK 691



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 126/284 (44%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILGM----------Q 220
           +P I     L+D   K G    A  I K  +   V+PN   Y+  I G+          +
Sbjct: 345 KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 404

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EMI++G  PD FTYN  +    +      A +L   MR  G     P   +Y IMI 
Sbjct: 405 LLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGIL---PNVYSYGIMIN 461

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L QN   +E  +LL  MI+ G  P+   Y  ++ G    G +  A + LE+M      P
Sbjct: 462 GLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHP 521

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+  YN  +K L      +EA   Y ++ + G  P   TY+ LI  Y + G  + A +  
Sbjct: 522 DLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLL 581

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +M   G   + DTY  +++G F  +  E+   +L+ ++  G K
Sbjct: 582 RQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDK 625



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 17/300 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L+   CK G ++ A+ + +++ N  +KPNA+TY  L                L+ M+  G
Sbjct: 564 LIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSG 623

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PDN  Y   I    ++  +  A  +   +   G     P    Y+ +I  L +   ME
Sbjct: 624 DKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLV---PDLHIYSSLISGLCKIADME 680

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   LL  M   G  P +  Y  +++G C +G +  A    + +  KG  P+ VTY   +
Sbjct: 681 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALI 740

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C N +  +A  LY  M++ G  P    YN+L +   +  + + A     EM  RG A
Sbjct: 741 DGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA 800

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            +V  +  ++ G     K++E   LL  ++++ +    +  +  + +    G LG  H++
Sbjct: 801 -NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRV 859



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 124/311 (39%), Gaps = 49/311 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQ------M 228
           P  +A   L  +LC   L   A  +  ++       A+ +  L + +++  IQ       
Sbjct: 113 PSADAFARLAASLCAASLFPQANGLLHQMIL-----AHPHPPLVLASIQRAIQDTDHRSR 167

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
             +P     +  +DT+ K   V  AA +   M   G    +PT +    ++  L++ D M
Sbjct: 168 SPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGL---APTRRCCNGLLKDLLRADAM 224

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLE--------------------------------- 315
           E  + L G M  +G LPDV TY   +E                                 
Sbjct: 225 ELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVM 284

Query: 316 --GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
             G+C +G VEEA+ F EEM + G  PD  TY   +  LC      EA  L   M   G 
Sbjct: 285 ISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGL 344

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P++  Y  L+  + + G+   AF+   EM   G   +   Y  +I GL    ++  A  
Sbjct: 345 KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 404

Query: 434 LLEEVVNKGLK 444
           LL+E++  GL+
Sbjct: 405 LLKEMIKVGLR 415



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E  K   +P I   N L+D  C+ G +  A  +   +  K + PN  TY  L        
Sbjct: 688 EMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNG 747

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                    +EM+  G APD F YN        A  + +A  L E M  +G         
Sbjct: 748 DITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA----NVS 803

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  ++    +  +++E   LL  M++   +P+  T ++V+     AGK+ EA++   E+
Sbjct: 804 LFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAEL 863

Query: 334 GNK 336
             K
Sbjct: 864 QQK 866


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 16/275 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+   C  G  D    + +  +K K+ PN  T+++L              +  +EMI 
Sbjct: 400 NILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 459

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G APD  TY + ID FCK   + +A  + + M +KG     P  +T+ I+I    + +R
Sbjct: 460 RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC---DPNIRTFNILINGYCKANR 516

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +++   L   M   G + D  TY  +++G C  GK+  A +  +EM ++  PP+IVTY  
Sbjct: 517 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 576

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L  LCDN   ++AL ++ ++ +      +  YN++I       + D A++ +  +  +G
Sbjct: 577 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 636

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               V TY +MI GL     + EA  L  ++   G
Sbjct: 637 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 671



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 182/377 (48%), Gaps = 30/377 (7%)

Query: 112 AHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-FVPV---------DVLL 159
            H+P  +  N +++ L  +  +A+   L+  M++Y  + N V + PV           L 
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M L +  E+  +K   +    ++++D LCK G +D A  +   ++ K +  N  TYNIL 
Sbjct: 346 MELLRKMEERNIKL--DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI 403

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      G + L +MI+    P+  T++  ID+F K   + EA +L + M  +G  
Sbjct: 404 GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI- 462

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             +P   TY  +I    + + +++   ++  M++ GC P++ T+  ++ G C A ++++ 
Sbjct: 463 --APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 520

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   +M  +G   D VTYN  ++  C+    + A  L+  M+     P++ TY +L+  
Sbjct: 521 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 580

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             + GE + A E + +++K     D+  Y ++I G+ + SKV++A  L   +  KG+K  
Sbjct: 581 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 640

Query: 447 YRKFDSYLMQLSVIGDL 463
            + ++  +  L   G L
Sbjct: 641 VKTYNIMIGGLCKKGPL 657



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 120/273 (43%), Gaps = 16/273 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E I     P+      L+D  CK   +D A  +   + +K   PN  T+NIL      
Sbjct: 454 HKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 513

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G++   +M   G   D  TYNT I  FC+   +  A +LF+ M ++      P 
Sbjct: 514 ANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV---PPN 570

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY I++  L  N   E+   +   +  S    D+  Y  ++ GMC A KV++A+    
Sbjct: 571 IVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 630

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            +  KG  P + TYN  +  LC      EA  L+ +M E G  P   TYN+LI  +   G
Sbjct: 631 SLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDG 690

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +   + +   E+ + G + D  T  ++ID L D
Sbjct: 691 DATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 723



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 152/342 (44%), Gaps = 24/342 (7%)

Query: 115 PLAYNLMIDILSS---TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171
           P  +N  +D+++    T+   +Q R    +LD   +    FV V  L  IL    EK++ 
Sbjct: 62  PFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLD---KEGTGFVAVADLRHILTSIGEKLEP 118

Query: 172 KTQPE-INALNLLLDALCKCGLVDYAETICKRVKN------KVKPNANTYNILG---MQT 221
               E I  +++  D     G + Y + I + V N      + +  +   +I     +  
Sbjct: 119 NEFDEWIKEVDVGSD-----GKIRYEDFIARMVANDRNLSYRERLRSGLVDIKADDAIDL 173

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI     P    ++       K +       L + M  KG    +    T +IMI  
Sbjct: 174 FRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI---AHNLYTLSIMINC 230

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++   FS +G +I  G  P+  T+  ++ G+CL G+V EA + ++ M   G+ PD
Sbjct: 231 FCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPD 290

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++T N  +  LC +    EA+ L  +M+E GC P+  TY  ++++  + G+   A E   
Sbjct: 291 LITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 350

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M++R    D   Y ++IDGL     ++ A  L  E+  KG+
Sbjct: 351 KMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 392



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 10/240 (4%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G A + +T +  I+ FC+ R +  A   F  M         P   T++ +I  L
Sbjct: 210 KQMELKGIAHNLYTLSIMINCFCRCRKLCLA---FSAMGKIIKLGYEPNTITFSTLINGL 266

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               R+ E   L+  M+  G  PD+ T   ++ G+CL+GK  EA   +++M   G  P+ 
Sbjct: 267 CLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 326

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   L V+C +     A+ L  +M E         Y+++I    + G  D AF  ++E
Sbjct: 327 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 386

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   ++ TY ++I G  +  + ++   LL +++        RK +  ++  SV+ D
Sbjct: 387 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-------RKINPNVVTFSVLID 439



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+   C+ G ++ A+ + +  V  KV PN  TY IL             ++  E++ +
Sbjct: 540 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 599

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
                D   YN  I   C A  V +A DLF  +  KG     P  KTY IMI  L +   
Sbjct: 600 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV---KPGVKTYNIMIGGLCKKGP 656

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   L   M   G  PD  TY  ++      G   ++ K +EE+   G+  D  T   
Sbjct: 657 LSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKM 716

Query: 348 FLKVLCDNK 356
            + +L D+K
Sbjct: 717 VIDMLSDDK 725



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 95/222 (42%)

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A D  +  R    +   PT   ++ +  A+ +  + +   +L   M   G   ++ T  
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 225

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++   C   K+  A+  + ++   GY P+ +T++  +  LC      EAL L  RM+E+
Sbjct: 226 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 285

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P + T N L++     G+   A     +M + GC  +  TY  +++ +    +   A
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             LL ++  + +KL   K+   +  L   G L     L + M
Sbjct: 346 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 387


>gi|255579214|ref|XP_002530453.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529998|gb|EEF31923.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 391

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 165/361 (45%), Gaps = 36/361 (9%)

Query: 83  SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
           ++   L  +  + K A  FF W   + N+ H    +N MIDIL   K+  K     C+++
Sbjct: 51  TIFETLSCYSNDWKSALDFFNWVEKECNFNHTTDTFNRMIDILE--KFNLKDETSFCNLI 108

Query: 143 DYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR 202
           D +  +  V    ++           I +  + +I   N++L    K G      + C+ 
Sbjct: 109 DALCEHKHVIESQELCF----GNNNGIDIVNKTKI--YNMILRGWFKMGWW----SKCR- 157

Query: 203 VKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
                            +  EEM Q G   D  +Y+  +D  CK     +A  L++ M+ 
Sbjct: 158 -----------------EFWEEMDQKGVHKDLHSYSIYMDIVCKGGKPWKAVKLYKEMKR 200

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           KG  +      +Y I++ A+  ++ ++    +   M   GC+P+V TY  +++ +C  G+
Sbjct: 201 KGMKLD---VVSYNIVVRAVGLSEGVDFAMRVYREMKELGCMPNVVTYNTIIKLLCETGR 257

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V+EAYK L++M  KG   D++TY+CF + L   K   E L L+ RMIE G  P + TY M
Sbjct: 258 VKEAYKMLDDMRKKGIVADVITYHCFFRCLEKPK---EILWLFDRMIESGVQPRMDTYVM 314

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+  +   G        W +M+++GC+ D   Y  +ID L     +  A    EE++ KG
Sbjct: 315 LMRKFGRWGFLRPVLLVWKKMEEQGCSPDEFAYNALIDALVQKGMLHMARRYEEEMLAKG 374

Query: 443 L 443
           L
Sbjct: 375 L 375



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 10/233 (4%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  ++   ID  C+ + V E+ +L  F    G  I + T K Y +++    +     +C 
Sbjct: 100 DETSFCNLIDALCEHKHVIESQELC-FGNNNGIDIVNKT-KIYNMILRGWFKMGWWSKCR 157

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
                M   G   D+ +Y   ++ +C  GK  +A K  +EM  KG   D+V+YN  ++ +
Sbjct: 158 EFWEEMDQKGVHKDLHSYSIYMDIVCKGGKPWKAVKLYKEMKRKGMKLDVVSYNIVVRAV 217

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
             ++  D A+R+Y  M E+GC P+V TYN +I +  E G    A++   +M K+G   DV
Sbjct: 218 GLSEGVDFAMRVYREMKELGCMPNVVTYNTIIKLLCETGRVKEAYKMLDDMRKKGIVADV 277

Query: 413 DTYCVMIDGLFDC-SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            TY       F C  K +E  +L + ++  G++    + D+Y+M +   G  G
Sbjct: 278 ITY----HCFFRCLEKPKEILWLFDRMIESGVQ---PRMDTYVMLMRKFGRWG 323


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 137/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           + + +++   P     N L+D  C  G ++ A +     VK  + P+ +TYN+L      
Sbjct: 320 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 379

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     ++EM + G  PD  TYN  I+ + +     +A DL   M +KG     PT
Sbjct: 380 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGI---EPT 436

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L + +RM+E   L   +++ G  PDV  +  +++G C  G VE A+  L+
Sbjct: 437 HVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLK 496

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  K  PPD VT+N  ++  C     +EA  L   M   G  P   +YN LIS Y   G
Sbjct: 497 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRG 556

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   AF    EM   G    + TY  +I  L    + + A  LL+E+VNKG+
Sbjct: 557 DIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 608



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 17/322 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM---QTLEE--- 224
           +P + + N ++      G ++ A  I   ++ K ++P++ TY   I GM     LEE   
Sbjct: 259 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 318

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+++G  P+  TYNT ID +C    +  A    + M  KG     P+  TY +++ 
Sbjct: 319 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIM---PSVSTYNLLVH 375

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL    RM E   ++  M   G +PD  TY  ++ G    G  ++A+    EM +KG  P
Sbjct: 376 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 435

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             VTY   + VL       EA  L+ ++++ G  P V  +N ++  +   G  + AF   
Sbjct: 436 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 495

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EMD++    D  T+  ++ G     KVEEA  LL+E+  +G+K  +  +++ +      
Sbjct: 496 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 555

Query: 461 GDLGAIHKLSDHMRKF-YNPVI 481
           GD+    ++ D M    +NP +
Sbjct: 556 GDIKDAFRVRDEMLSIGFNPTL 577



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 126/269 (46%), Gaps = 16/269 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +K    P ++  NLL+ AL   G +  A+ + K ++ K + P+A TYNIL        
Sbjct: 357 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 416

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                     EM+  G  P + TY + I    +   + EA DLFE +  +G    SP   
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV---SPDVI 473

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  M+     N  +E  F LL  M      PD  T+  +++G C  GKVEEA   L+EM
Sbjct: 474 MFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 533

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PD ++YN  +       +  +A R+   M+ +G  P++ TYN LI    +  E 
Sbjct: 534 KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 593

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           D A E   EM  +G + D  TY  +I+G+
Sbjct: 594 DLAEELLKEMVNKGISPDDSTYLSLIEGM 622



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 3/235 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM ++  +   +T+N  ++  CK   + +A +   FM   G     P   +Y  +I    
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLG---FKPNVVSYNTIIHGYS 273

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
               +E    +L  M   G  PD  TY  ++ GMC  G++EEA    ++M   G  P+ V
Sbjct: 274 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 333

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +   C+  + + A      M++ G  PSV TYN+L+   F  G    A +   EM
Sbjct: 334 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 393

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            K+G   D  TY ++I+G   C   ++A  L  E+++KG++  +  + S +  LS
Sbjct: 394 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS 448



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALV 283
           M + G  P   T N  +  F K   +  A  L+ E  R + S+    T  T+ IM+  L 
Sbjct: 183 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISS----TVYTFNIMVNVLC 238

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  ++++    +G M   G  P+V +Y  ++ G    G +E A + L+ M  KG  PD  
Sbjct: 239 KEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 298

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  +C     +EA  L+ +M+E+G  P+  TYN LI  Y   G+ + AF    EM
Sbjct: 299 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 358

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            K+G    V TY +++  LF   ++ EA  +++E+  KG+
Sbjct: 359 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 398



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 93/221 (42%)

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +LF+ +      +S  ++  + +++    +  R +E F     M   G +P + T  ++L
Sbjct: 140 ELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDML 199

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                  ++E A+    EM        + T+N  + VLC      +A    G M  +G  
Sbjct: 200 SLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFK 259

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+V +YN +I  Y   G  +GA      M  +G   D  TY  +I G+    ++EEA  L
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 319

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +++V  GL      +++ +      GDL       D M K
Sbjct: 320 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 360


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 137/300 (45%), Gaps = 19/300 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P     N L+D LCK   +D A  +    + +   P+  TYN L             + 
Sbjct: 129 RPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 188

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           T  +M + G+ P   ++N  I   C+AR + +A ++F  M  +      P   TY+++I 
Sbjct: 189 TFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDF---HPNLVTYSVVID 245

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++D+++E   LL  M++ GC PD+  Y  ++ G   AG+++ A   L  M ++G  P
Sbjct: 246 GLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP 305

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTY   +  LC     D+A  ++  ++   C P+V TY+ LI  Y      D   +  
Sbjct: 306 DVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVM 365

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM    C  +V TY  MI GL    + EEA  +  E+   G     R +      L +I
Sbjct: 366 REM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMI 422



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 26/268 (9%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA- 231
            QP++ +   L++ LCK G VD A                           +M+  G   
Sbjct: 92  AQPDVVSYTTLINGLCKLGRVDAA----------------------FDLFRKMVAAGGCR 129

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ FTYN  +D  CK   +  A  +    R +     +P   TY  ++ AL Q  R++E 
Sbjct: 130 PNAFTYNALVDGLCKQDRLDAARAVITEARKRDF---APDVVTYNTLMAALFQLGRVDEA 186

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            +    M   G +P + ++  ++ G+C A ++ +A +   EM ++ + P++VTY+  +  
Sbjct: 187 LATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDG 246

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC +   DEA +L  RM+  GC P +  Y  L+  +   G  D A      M  +GC  D
Sbjct: 247 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 306

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           V TY V+ID L    +V++A  +  E+V
Sbjct: 307 VVTYTVVIDKLCKVGRVDDAHEIFRELV 334



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 19/263 (7%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------- 217
           TE  K    P++   N L+ AL + G VD A  T  +  +    P   ++N +       
Sbjct: 156 TEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRA 215

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 ++   EMI     P+  TY+  ID  CK+  + EA  L + M ++G     P  
Sbjct: 216 RRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGC---RPDL 272

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  +++      R++    LL  M++ GC+PDV TY  V++ +C  G+V++A++   E
Sbjct: 273 VAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRE 332

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           +      P++VTY+  +   C     DE  ++   M E+ C P+V TYN +I     +  
Sbjct: 333 LVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGLSMVDR 389

Query: 393 PDGAFETWHEMDKRGCAQDVDTY 415
            + A+  + EM + G   D  TY
Sbjct: 390 NEEAYGMFREMSECGFVPDARTY 412



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 25/290 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA-PDNFTYNT 239
           +++L  LC+CG V  A                      ++  +  +++ HA PD  +Y T
Sbjct: 64  SIILQGLCRCGRVAQA----------------------LEHFDASLELAHAQPDVVSYTT 101

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I+  CK   V  A DLF  M   G     P A TY  ++  L + DR++   +++    
Sbjct: 102 LINGLCKLGRVDAAFDLFRKMVAAGG--CRPNAFTYNALVDGLCKQDRLDAARAVITEAR 159

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
                PDV TY  ++  +   G+V+EA     +M  +GY P +V++N  +  LC  +   
Sbjct: 160 KRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLA 219

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +AL ++  MI+    P++ TY+++I    +  + D A +    M   GC  D+  Y  ++
Sbjct: 220 DALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLV 279

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            G     +++ A  LL  +V++G       +   + +L  +G +   H++
Sbjct: 280 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEI 329



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 15/274 (5%)

Query: 213 TYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           TYN+L                L EM   G   ++ T +  +   C+   V +A + F+  
Sbjct: 27  TYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDAS 86

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCL 319
                  + P   +Y  +I  L +  R++  F L   M+ +G C P+  TY  +++G+C 
Sbjct: 87  LELAH--AQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCK 144

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
             +++ A   + E   + + PD+VTYN  +  L      DEAL  + +M E G  P++ +
Sbjct: 145 QDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVS 204

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           +N +I+          A E ++EM  R    ++ TY V+IDGL    +++EA  LL+ +V
Sbjct: 205 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV 264

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           ++G +     +   ++  S  G L +   L   M
Sbjct: 265 SEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRM 298



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 19/204 (9%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILG 218
           L+ + E I     P +   ++++D LCK   +D A+ +  R V    +P+   Y   +LG
Sbjct: 222 LEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLG 281

Query: 219 MQT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L  M+  G  PD  TY   ID  CK   V +A ++F   R   +   
Sbjct: 282 FSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIF---RELVANKC 338

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP   TY+ +I    +  R++E   ++  M    C P+V TY  ++ G+ +  + EEAY 
Sbjct: 339 SPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYG 395

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVL 352
              EM   G+ PD  TY    + L
Sbjct: 396 MFREMSECGFVPDARTYRGLKRAL 419


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 147/352 (41%), Gaps = 51/352 (14%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL----------- 217
           K    P + + NL++ A+CK GLVD A  + + +   K +P+  TY  L           
Sbjct: 181 KTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRID 240

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +  L+EM   G  P + T+N  I+  CK   +     L + M  KG     P   TY 
Sbjct: 241 EAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCV---PNEVTYN 297

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG--------------- 321
            +I  L    ++++  SLL  M+ S C+P+  TY  ++ G+   G               
Sbjct: 298 TIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEER 357

Query: 322 --------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
                               K EEA    ++M  KG  P+IV Y+  +  LC     DEA
Sbjct: 358 GHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEA 417

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             +   M+  GC P+  TY+ LI  +F+ G    A   W EM K  C  +   Y V+I G
Sbjct: 418 KEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHG 477

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           L +  K+ EA  +   ++ +GL+     + S +  L   G +    KL + M
Sbjct: 478 LCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 529



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P     N+L++ LCK G +V   + +         PN  TYN +             +  
Sbjct: 256 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 315

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+     P++ TY T I+   K     +   L   +  +G          Y+ +I  
Sbjct: 316 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH---HANEYAYSTLISG 372

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + ++ EE   L   M+  GC P++  Y  +++G+C  GK++EA + L EM NKG  P+
Sbjct: 373 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 432

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+  +K      N  +A+R++  M +  C P+   Y++LI    E G+   A   W 
Sbjct: 433 AFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWT 492

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            M  RG   DV  Y  MI GL +   VE    L  E++
Sbjct: 493 HMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEML 530



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 33/337 (9%)

Query: 135 FRLVCSMLDYMKRNNKVFVPVDVLLMILKQY-----TEKI---------KVKTQPEINAL 180
           F  +  + D MKR  +VF+  + +L + + Y      EK          + + +  + + 
Sbjct: 96  FGTLFQVFDRMKRERRVFIEKNFIL-VFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSF 154

Query: 181 NLLLDALCKCGLVDYAETICK---RVKNKVKPNANTYNIL------------GMQTLEEM 225
           N +L+ + + GL   A    +     K  + PN  ++N++             ++   EM
Sbjct: 155 NSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREM 214

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
                 PD FTY T +D  CK   + EA  L + M+ +G     P++ T+ ++I  L + 
Sbjct: 215 AIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCF---PSSVTFNVLINGLCKK 271

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             M     L+ +M   GC+P+  TY  ++ G+CL GK+++A   L+ M      P+ VTY
Sbjct: 272 GDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTY 331

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  L       + + L   + E G   +   Y+ LIS  F+  + + A   W +M +
Sbjct: 332 GTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVE 391

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +GC  ++  Y  +IDGL    K++EA  +L E+VNKG
Sbjct: 392 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 428



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 28/245 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + + ++   QP I   + L+D LC+ G +D A+ I                      L E
Sbjct: 386 WKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI----------------------LCE 423

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G  P+ FTY++ I  F K     +A  +++ M         P    Y+++I  L +
Sbjct: 424 MVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCV---PNEICYSVLIHGLCE 480

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM--GNKGYPPDI 342
           + ++ E   +  HM+  G  PDV  Y  ++ G+C AG VE   K   EM        PD+
Sbjct: 481 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDV 540

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE-LGEPDGAFETWH 401
           VTYN  L+ LC   +   A+ L   M++ GC P + T N+ ++   E L  P    E   
Sbjct: 541 VTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLD 600

Query: 402 EMDKR 406
           E+  R
Sbjct: 601 ELVVR 605



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 53/292 (18%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N +++ LC  G +D A ++  R V +K  PN  TY  L            G+  L  + +
Sbjct: 297 NTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEE 356

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            GH  + + Y+T I    K     EA  L++ M  KG     P    Y+ +I  L +  +
Sbjct: 357 RGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGC---QPNIVVYSALIDGLCREGK 413

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEG------------------------------- 316
           ++E   +L  M+N GC P+  TY  +++G                               
Sbjct: 414 LDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSV 473

Query: 317 ----MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI--E 370
               +C  GK+ EA      M  +G  PD+V Y+  +  LC+  + +  L+L+  M+  E
Sbjct: 474 LIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQE 533

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               P V TYN+L+    +      A +  + M  RGC  D+ T  + ++ L
Sbjct: 534 SDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 342 IVTYNCFLKVLCDNKNGDEALRLY--GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           + ++N  L V+        AL  Y  G   +    P+V ++N++I    +LG  D A E 
Sbjct: 151 VRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEV 210

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           + EM  + C  DV TYC ++DGL    +++EA  LL+E+  +G       F+  +  L  
Sbjct: 211 FREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCK 270

Query: 460 IGDLGAIHKLSDHM 473
            GD+  + KL D+M
Sbjct: 271 KGDMVRVTKLVDNM 284


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 123/253 (48%), Gaps = 20/253 (7%)

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           K+ V PN  TYN+L              + L+EM + G  PD+ TY T +   CK   + 
Sbjct: 152 KDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLD 211

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           EA ++   M         P A +Y  +++AL +  RM+E FS++  M+  G  P+V TY 
Sbjct: 212 EATEVLAAM--------PPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYT 263

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +++  C AG++  A   L  M   G  P++VT+   ++ L D+    +AL ++  M+  
Sbjct: 264 TIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAE 323

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  PS  +YN+LI     +G+  GA    + M++ GC  +V TY  +IDG      +  A
Sbjct: 324 GWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGA 383

Query: 432 CFLLEEVVNKGLK 444
             +  ++   G K
Sbjct: 384 ISIWNDMSRSGCK 396



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 118/284 (41%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           QP +     ++DA CK G +  A  I  R V     PN  T+  L             + 
Sbjct: 256 QPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALD 315

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+  G AP   +YN  I   C    +  A+ +   M   G     P  +TY+ +I 
Sbjct: 316 MWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCF---PNVRTYSTLID 372

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +    S+   M  SGC P+V  Y  +++  C      +A   +++M  +  PP
Sbjct: 373 GFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPP 432

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VT+N  ++ LCD +    AL ++  M   GC P+ +TYN LI   F  G    A    
Sbjct: 433 NTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMV 492

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            EM   G    + TY  ++ GL       EA   + +++ +G++
Sbjct: 493 TEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ 536



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 21/290 (7%)

Query: 215 NILGMQTL--EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           N++G   L  + M + G  P+ FTYN  +   C+   V  A  + + M  KG     P  
Sbjct: 138 NMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGC---PPDD 194

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TYA ++  L + DR++E   +L  M      P  ++Y  ++  +C   +++E +  + +
Sbjct: 195 VTYATIVSVLCKLDRLDEATEVLAAMP-----PVAASYNAIVLALCREFRMQEVFSVVSD 249

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +G  P+++TY   +   C       A  +  RM+  GC P+V T+  L+   F+ G 
Sbjct: 250 MVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGR 309

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
              A + W  M   G A    +Y ++I GL     ++ A  +L  +   G     R + +
Sbjct: 310 VHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYST 369

Query: 453 YLMQLSVIGDL-GAIHKLSDHMRKFYNP----------VIARRLALNQKR 491
            +   S  GDL GAI   +D  R    P          V  ++L  NQ +
Sbjct: 370 LIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAK 419



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P   + N+L+  LC  G +  A +I   + ++   PN  TY+ L             +  
Sbjct: 327 PSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISI 386

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +M + G  P+   Y   +D FCK  M  +A  L + M  +      P   T+  +I +
Sbjct: 387 WNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENC---PPNTVTFNTLIRS 443

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    R+     +   M   GC+P+  TY E++ G+   G   +A   + EM + G    
Sbjct: 444 LCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELS 503

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +  LC  +   EA+   G+MI  G  P+  T++ +I  Y + GE   A     
Sbjct: 504 LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLG 563

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M+   C +++  Y +++  L +  K+ +A   L +++ +G+
Sbjct: 564 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGI 605



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 120/306 (39%), Gaps = 32/306 (10%)

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVD 156
           + +A   ++YN++I  L S        +   S+L+ M+++               F    
Sbjct: 323 EGWAPSTVSYNILIRGLCSVG----DLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 378

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYN 215
            L   +  + +  +   +P +     ++D  CK  + + A++ I K +     PN  T+N
Sbjct: 379 DLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFN 438

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +    EM + G  P+  TYN  I    +     +A  +   M++ 
Sbjct: 439 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSH 498

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G  +S     TY  ++  L Q     E    +G MI  G  P+  T+  ++   C  G+V
Sbjct: 499 GIELS---LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEV 555

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
             A   L  M       +I+ Y   +  LC+     +A+    +M+  G +P+  T+N+L
Sbjct: 556 RMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 615

Query: 384 ISMYFE 389
           +   F 
Sbjct: 616 VRGVFR 621


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 136/282 (48%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P+    N+L++A  K   VD    + + ++N+   PN  TY+IL             ++
Sbjct: 121 RPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK 180

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M   G  P+ FTY + ID   K+  V +A  LFE M ++G      T   Y  +I 
Sbjct: 181 VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLV---ATRVVYNSLIH 237

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R +    L   M++ G  PD  T+  ++ G+ +AG+  EA +  +E  + G   
Sbjct: 238 GLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCAL 297

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+  YN  +  LC +K  DEA  ++G + E G  P V T+N L+    + G    AF   
Sbjct: 298 DVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILL 357

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +M + GC  DV  Y  +IDGL    +VEEA  LL E+ + G
Sbjct: 358 GDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLG 399



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 161/380 (42%), Gaps = 25/380 (6%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN--------KVFVPVDVLLMILKQYTEK 168
           AYN +ID      Y  K   +   M     R +          F     +  + K + E 
Sbjct: 91  AYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEM 150

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQT---- 221
                 P +   ++L+DA+CKCG V+ A  +   +K++  +PN  TY   I G+      
Sbjct: 151 QNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHV 210

Query: 222 ------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                  EEM   G       YN+ I    ++     AA LF  M +KG     P   T+
Sbjct: 211 DKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGL---QPDHVTF 267

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++  L    R  E   +     + GC  DV+ Y  +++ +C + +++EA++   E+  
Sbjct: 268 TSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEE 327

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  PD+ T+N  +  LC +    +A  L G M   GC P V  YN LI    + G  + 
Sbjct: 328 DGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEE 387

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A +   EM   G   DV TY  +ID      ++E+A  L EE+  KG       +++ L 
Sbjct: 388 AGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTV-TYNTILN 446

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
            L + G +   +KL + M++
Sbjct: 447 GLCMAGRVDEAYKLFNGMKQ 466



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 159/359 (44%), Gaps = 41/359 (11%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +A++FF W   Q        A   ++++L      A++F     +L  ++++  +  P  
Sbjct: 1   MAYKFFKWVRTQRGGVPSVRACTTLVEMLGI----ARRFNEAEEVLAEVEKSRYILQPRI 56

Query: 157 VLLM--------ILKQYTEKIKV----KTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
            + +        +L++  E +K     +     +A N L+DA  K G    A  +     
Sbjct: 57  FIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAV----- 111

Query: 205 NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
                    Y ++G        Q G  PD +T+N  ++ F KA+ V     LFE M+ + 
Sbjct: 112 ---------YRVMG--------QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQN 154

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP   TY+I+I A+ +   +E+   +   M + GC P++ TY  +++G+  +G V+
Sbjct: 155 ---CSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVD 211

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +A+   EEM ++G     V YN  +  L  +   D A +L+  M+  G  P   T+  L+
Sbjct: 212 KAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLV 271

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 G    A   + E    GCA DV+ Y V+ID L    +++EA  +  E+   GL
Sbjct: 272 YGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGL 330



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           TA  Y  +I A V+    ++  ++   M  SG  PD  T+  ++     A +V+  +K  
Sbjct: 88  TASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLF 147

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           EEM N+   P+++TY+  +  +C     ++AL+++  M   GC P++ TY  +I    + 
Sbjct: 148 EEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKS 207

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G  D AF  + EM   G       Y  +I GL    + + A  L  E+++KGL+  +  F
Sbjct: 208 GHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTF 267

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMR 474
            S +  L V G      ++    R
Sbjct: 268 TSLVYGLGVAGRASEARRIFQEAR 291



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 84/186 (45%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+    L  M    C    S Y  +++    AG  ++A      MG  G  PD  T+N 
Sbjct: 70  LEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNV 129

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +      K  D   +L+  M    C P+V TY++LI    + G  + A + + +M  RG
Sbjct: 130 LMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRG 189

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
           C  ++ TY  MIDGL     V++A FL EE+ ++GL      ++S +  L   G   A  
Sbjct: 190 CRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAA 249

Query: 468 KLSDHM 473
           KL   M
Sbjct: 250 KLFREM 255


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 137/282 (48%), Gaps = 14/282 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK---RVKNKVKPNANTYNILGMQT 221
           + E +     P++   N+L+DALCK G     + +     +  N+V    + +NI+G + 
Sbjct: 246 FHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRR 305

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +         PD  +Y   I   CK +MV EA  LF  MR KG T   P   TY+ +I  
Sbjct: 306 V--------TPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGIT---PDKVTYSSLIDG 354

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +++R+   + LL  M   G   DV TY   L  +C   +V++A   ++++ ++G  P+
Sbjct: 355 LCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPN 414

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I TYN  +  LC     + A  ++  ++  G   +V TYN++I+     G  D A     
Sbjct: 415 INTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLE 474

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M+  GC  DV TY  +I  LF   +  +A  LL E++ +GL
Sbjct: 475 KMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 27/287 (9%)

Query: 183 LLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           ++D+LCK  LV  A E   + +  KV P+  T++ L                  EM+   
Sbjct: 194 IIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTN 253

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK--------------GSTISSPTAKTY 275
             PD  T+N  +D  CK     E  ++   M  +              G    +P   +Y
Sbjct: 254 INPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSY 313

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I+I  L +   ++E  SL   M   G  PD  TY  +++G+C + ++  A++ L++M  
Sbjct: 314 TIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHA 373

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G P D++TY  FL  LC N   D+A+ L  ++ + G  P++ TYN+LI    + G  + 
Sbjct: 374 RGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFEN 433

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           A   + ++  +G    V TY +MI+GL      +EA  LLE++ + G
Sbjct: 434 AQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNG 480



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 33/313 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P I   N +++  C  G +D+A ++  ++ K    P+  T   L             +  
Sbjct: 81  PSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHF 140

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            + +I  G   +  +Y   I+  CK   + E     + +R     + +     Y+ +I +
Sbjct: 141 HDHVIARGFRLNEVSYGILINGLCK---MGETRAALQVLRKIDGKLVNTNVVMYSTIIDS 197

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   + E + L   MI     PDV T+  ++ G C+ G+ +EA+    EM      PD
Sbjct: 198 LCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPD 257

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIE--------------VG---CWPSVQTYNMLI 384
           + T+N  +  LC   +  E   +   M++              +G     P V +Y ++I
Sbjct: 258 VCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIII 317

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               ++   D A   ++EM  +G   D  TY  +IDGL    ++  A  LL+++  +G  
Sbjct: 318 KRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQP 377

Query: 445 LPYRKFDSYLMQL 457
                + S+L  L
Sbjct: 378 ADVITYTSFLHAL 390



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 6/217 (2%)

Query: 207 VKPNANTYNILGMQTLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
           VK N N Y I    +L   +Q+    P   T+NT I+ +C    +  A  +   +   G 
Sbjct: 57  VKSNNNNYPI--AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGY 114

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   T   +I  L  N ++ E      H+I  G   +  +Y  ++ G+C  G+   
Sbjct: 115 ---HPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRA 171

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A + L ++  K    ++V Y+  +  LC  K   EA  LY +MI     P V T++ LI 
Sbjct: 172 ALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIY 231

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +  +G+   AF  +HEM       DV T+ +++D L
Sbjct: 232 GFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDAL 268



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 18/234 (7%)

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
           AI +F +   +  +  + EF +  GS + S               N+      SL   + 
Sbjct: 30  AISSFYRMLRMNPSPSIIEFNKILGSLVKS--------------NNNNYPIAISLYHRLQ 75

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
            +   P + T+  V+   C  G+++ A+  L ++   GY PD +T    +K LC N    
Sbjct: 76  LNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVH 135

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EAL  +  +I  G   +  +Y +LI+   ++GE   A +   ++D +    +V  Y  +I
Sbjct: 136 EALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTII 195

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD----LGAIHKL 469
           D L     V EA  L  +++ K +      F + +    ++G      G  H++
Sbjct: 196 DSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEM 249


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 163/381 (42%), Gaps = 45/381 (11%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA-GHQDNYAHEPLAYNLMIDILSSTKY 130
           L +   P T + V  VL+R       A +FF +   H   Y H+  +++L IDI +    
Sbjct: 45  LSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHI 104

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-------------PEI 177
               + L+  M     R+ ++        ++ ++Y    K                  ++
Sbjct: 105 HPTVWSLIHRM-----RSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDL 159

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237
            + N +LD LCK   V+ A  + + ++ +                        + D  TY
Sbjct: 160 ASFNTILDVLCKSKRVEKAYELFRALRGRF-----------------------SADTVTY 196

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N  ++ +C  +   +A ++ + M  +G    +P   TY  M+    +  ++ + +     
Sbjct: 197 NVIVNGWCLIKRTPKALEVLKEMVDRGI---NPNLTTYNTMLQGFFRAGQIRQAWEFFLE 253

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M    C  DV TY  V+ G  +AG+++      +EM  +G  P + TYN F++VLC   +
Sbjct: 254 MKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDS 313

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            + A+ ++  M+  G  P+V TYN+LI   F  G+     E    M+  GC  +  TY +
Sbjct: 314 VENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNM 373

Query: 418 MIDGLFDCSKVEEACFLLEEV 438
           MI    +CS+VE+A  L E++
Sbjct: 374 MIRYYSECSEVEKALGLFEKM 394


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 151/347 (43%), Gaps = 51/347 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P + + NL++ ++CK GLVD A  + + +   K  P+A TY  L             +  
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G  P   T+N  I+  CK    T    L + M  KG     P   TY  +I  
Sbjct: 239 LDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCV---PNEVTYNTLIHG 295

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-------------------- 321
           L    ++++  SLL  M++S C+P+  TY  ++ G+   G                    
Sbjct: 296 LCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVN 355

Query: 322 ---------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                          K EEA +  +E  +KG   + V Y+  +  LC ++  DEA+++  
Sbjct: 356 EYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILS 415

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M + GC P+  T++ L+  +FE+G    A E W +M K  CA++   Y V+I GL    
Sbjct: 416 EMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDG 475

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           KV EA  +  +++  G +     + S +  L   G +    KL + M
Sbjct: 476 KVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEM 522



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243
           +D  CK   V Y+  +    +++ KP+        M+ L EM   G AP+ FT+++ +  
Sbjct: 383 MDKGCKLNTVLYSALVDGLCRDR-KPDE------AMKILSEMTDKGCAPNAFTFSSLMKG 435

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           F +     +A ++++ M TK +   +     Y+++I  L ++ ++ E   +   M+ +GC
Sbjct: 436 FFEVGNSHKAIEVWKDM-TKINCAENEVC--YSVLIHGLCKDGKVMEAMMVWAKMLATGC 492

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG--NKGYPPDIVTYNCFLKVLCDNKNGDEA 361
            PDV  Y  +++G+C AG VEEA K   EM        PD++TYN     LC   +   A
Sbjct: 493 RPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRA 552

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEP--DGA 396
           + L   M++ GC P + T N+ + M  E  +P  DGA
Sbjct: 553 VDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGA 589



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 53/284 (18%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  LC  G +D A ++  R V +K  PN  TY  +            G + L  M +
Sbjct: 290 NTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEE 349

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G+  + + Y+  +    K     EA  LF+    KG  +++     Y+ ++  L ++ +
Sbjct: 350 RGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNT---VLYSALVDGLCRDRK 406

Query: 288 MEECFSLLGHMINSGCLPDVST-----------------------------------YKE 312
            +E   +L  M + GC P+  T                                   Y  
Sbjct: 407 PDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSV 466

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI--E 370
           ++ G+C  GKV EA     +M   G  PD+V Y+  ++ LCD  + +EAL+LY  M+  E
Sbjct: 467 LIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLE 526

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               P V TYN+L +   +      A +  + M  RGC  D+ T
Sbjct: 527 PDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVT 570



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 5/201 (2%)

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS- 301
            + KA +  +A +LF   R        PT K++  ++  ++Q    +       H++ + 
Sbjct: 116 AYGKAHLPNKAIELF--YRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAK 173

Query: 302 --GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
               LP+V ++  +++ MC  G V+ A +   EM  +   PD  TY   +  LC     D
Sbjct: 174 DMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRID 233

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EA+ L   M   GC+PS  T+N+LI+   + G+     +    M  +GC  +  TY  +I
Sbjct: 234 EAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLI 293

Query: 420 DGLFDCSKVEEACFLLEEVVN 440
            GL    K+++A  LL+ +V+
Sbjct: 294 HGLCLKGKLDKALSLLDRMVS 314



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P   ++N+ ++   +A     A + +  +         P   ++ ++I ++ +   ++  
Sbjct: 141 PTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNA 200

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             L   M    C+PD  TY  +++G+C   +++EA   L+EM  +G  P   T+N  +  
Sbjct: 201 IELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLING 260

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC   +     +L   M   GC P+  TYN LI      G+ D A      M    C  +
Sbjct: 261 LCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPN 320

Query: 412 VDTYCVMIDGL 422
             TY  +I+GL
Sbjct: 321 EVTYGTIINGL 331



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMI---EVGCWPSVQTYNMLISMYFELGEPDGA 396
           P + ++N  L V+      D AL  Y  ++   ++   P+V ++N++I    +LG  D A
Sbjct: 141 PTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNA 200

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            E + EM  R C  D  TYC ++DGL    +++EA  LL+E+  +G       F+  +  
Sbjct: 201 IELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLING 260

Query: 457 LSVIGDLGAIHKLSDHM 473
           L   GD   + KL D+M
Sbjct: 261 LCKKGDFTRVTKLVDNM 277



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 15/212 (7%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM-GNK--GYPPDIVTYNCFLKVLCDNKNGD 359
           C P V ++  VL  +  AG  + A +F   + G K     P+++++N  +K +C     D
Sbjct: 139 CKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVD 198

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A+ L+  M    C P   TY  L+    ++   D A     EM   GC     T+ V+I
Sbjct: 199 NAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLI 258

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM------ 473
           +GL           L++ +  KG       +++ +  L + G L     L D M      
Sbjct: 259 NGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCV 318

Query: 474 ------RKFYNPVIARRLALNQKRVRISLREK 499
                     N ++ +  AL+  RV + + E+
Sbjct: 319 PNEVTYGTIINGLVKQGRALDGARVLVLMEER 350


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 17/294 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKV-KPNANTY-NILGMQTLE 223
           E ++   +P +     L+D LCK G  + A     K V++ + KPN +TY +++G    E
Sbjct: 335 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKE 394

Query: 224 E-----------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           +           M + G  P+  TY T I+  CKA     A +L   M  +G     P  
Sbjct: 395 DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGF---RPNI 451

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I +L +  R  E + LL    + G   D  TY  +++  C    +++A  F   
Sbjct: 452 YTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCR 511

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G+  D+   N  +   C  K   E+ RL+  ++ +G  P+ +TY  +IS Y + G+
Sbjct: 512 MNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGD 571

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            D A + +H M + GC  D  TY  +I GL   S V+EAC L E ++++GL  P
Sbjct: 572 FDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPP 625



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 175/389 (44%), Gaps = 26/389 (6%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTK 129
           LD     LT +  + V+     E    +A  FF WA   + + H    Y +  D L +  
Sbjct: 105 LDFDANSLTHEQAITVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLIANG 164

Query: 130 YKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK 189
              K   ++  ML       ++   V +++ +  Q          P    +N +L+   +
Sbjct: 165 NLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQ-------GLSPSSITMNCVLEIAIE 217

Query: 190 CGLVDYAETICKRVKNK-VKPNANTYNILGM------------QTLEEMIQMGHAPDNFT 236
            GL+DYAE +   +  + V P+++++ ++ +            + L  MIQ G  PDN T
Sbjct: 218 SGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNAT 277

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
               +   C+  +V  A   F  M   G     P    +  +I  L +   +++ F +L 
Sbjct: 278 CTLILSALCENGLVNRAIWYFRKMIDLG---FKPNLINFTSLIDGLCKKGSIKQAFEMLE 334

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDN 355
            M+ +G  P+V T+  +++G+C  G  E+A++ FL+ + +  Y P++ TY   +   C  
Sbjct: 335 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKE 394

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              + A  L+ RM E G +P+V TY  LI+ + + G  D A+E  + MD  G   ++ TY
Sbjct: 395 DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTY 454

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +ID L   S+  EA  LL +  + GL+
Sbjct: 455 NAVIDSLCKKSRAPEAYELLNKAFSCGLE 483



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 136/314 (43%), Gaps = 15/314 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+     L+L ALC+ GLV+ A    +++ +   KPN   +  L              + 
Sbjct: 273 PDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 332

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM++ G  P+ +T+   ID  CK     +A  LF  ++   S I  P   TY  MI  
Sbjct: 333 LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF--LKLVRSDIYKPNVHTYTSMIGG 390

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + D++     L   M   G  P+V+TY  ++ G C AG  + AY+ +  M ++G+ P+
Sbjct: 391 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPN 450

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I TYN  +  LC      EA  L  +    G      TY +LI    +  +   A   + 
Sbjct: 451 IYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFC 510

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M+K G   D+    ++I       K++E+  L + VV+ GL      + S +      G
Sbjct: 511 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEG 570

Query: 462 DLGAIHKLSDHMRK 475
           D     K   +M++
Sbjct: 571 DFDLALKYFHNMKR 584



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 110/280 (39%), Gaps = 19/280 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +N    L++  CK G  D A  +   + ++  +PN  TYN +              + 
Sbjct: 414 PNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYEL 473

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +    G   D  TY   I   CK   + +A   F  M   G        +   I+I A
Sbjct: 474 LNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGF---EADMRLNNILIAA 530

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +M+E   L   +++ G +P   TY  ++ G C  G  + A K+   M   G  PD
Sbjct: 531 FCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPD 590

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY   +  LC     DEA +LY  MI+ G  P   T   L   Y +  +   A     
Sbjct: 591 SFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLE 650

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +DK+   + V T   ++  L    KV  A    ++++ K
Sbjct: 651 PLDKKLWIRTVRT---LVRKLCSEKKVGVAALFFQKLLEK 687



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +  F +   + EA  +   M+ +G    SP++ T   ++   +++  ++   ++   M  
Sbjct: 177 LRNFSEIGRLNEAVGMVMDMQNQGL---SPSSITMNCVLEIAIESGLIDYAENVFDEMSV 233

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  PD S++K ++ G    GK++EA ++L  M  +G+ PD  T    L  LC+N   + 
Sbjct: 234 RGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNR 293

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+  + +MI++G  P++  +  LI    + G    AFE   EM + G   +V T+  +ID
Sbjct: 294 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 353

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLP 446
           GL      E+A  L  ++V   +  P
Sbjct: 354 GLCKRGWTEKAFRLFLKLVRSDIYKP 379



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 1/168 (0%)

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G++ EA   + +M N+G  P  +T NC L++  ++   D A  ++  M   G  P   ++
Sbjct: 184 GRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSF 243

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            +++   F  G+   A      M +RG   D  T  +++  L +   V  A +   ++++
Sbjct: 244 KLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMID 303

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
            G K     F S +  L   G +  A   L + +R  + P +    AL
Sbjct: 304 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTAL 351


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 192/464 (41%), Gaps = 73/464 (15%)

Query: 58  IIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +I+  +A++  +E  L  L   L    V  VLQ  Q +E++A RFF WA  Q  Y H+P+
Sbjct: 171 LIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQ-LQTDERVALRFFYWADRQWRYRHDPI 229

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE 176
                         + + F  V  M+ Y  R  K+   + VL M+ K   E       P+
Sbjct: 230 R-------------RPEAFGYV--MVSY-SRAGKLRNAMRVLTMMQKAGIE-------PD 266

Query: 177 INALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLE 223
           ++  N  +  L     +D A    +R++  +++PN  TYN L             M+ + 
Sbjct: 267 LSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIA 326

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTE------------------------------- 252
           EM   G +PD  +Y T +   CK + + E                               
Sbjct: 327 EMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 386

Query: 253 --AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
               +  EF+R             Y+ ++ +  +  RM++   ++  M + GC+PDV TY
Sbjct: 387 GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTY 446

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             V+ G+C   KV++A K L +M   G  P+ V+Y   L  LC N N  EA  +   M E
Sbjct: 447 TSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMN-MSE 505

Query: 371 VGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
              W P+  TY++L+  +   G+   A +   EM K+G         ++I  L    KV+
Sbjct: 506 EDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVD 565

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           EA   +E+ +N G  +    F + +       DL A   L D M
Sbjct: 566 EAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM 609



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 9/270 (3%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + + EM   G  PD  TY + I+  C+ R V +A  +   M   G     P   +Y  ++
Sbjct: 429 EIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGC---KPNTVSYTALL 485

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +N    E   ++        +P+  TY  ++ G    GK  EA   + EM  KG+ 
Sbjct: 486 NGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFF 545

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P  V  N  ++ LC  +  DEA R   + +  GC  +V  +  +I  + +  + + A   
Sbjct: 546 PTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSL 605

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             +M       DV TY  +ID L    ++EEA  L  +++  GL      + + + Q   
Sbjct: 606 LDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCR 665

Query: 460 IGDLGAIHKLSDHM------RKFYNPVIAR 483
           +G +  + KL + M      R  YN VI +
Sbjct: 666 MGRVEDLLKLLEKMLSRQECRTAYNQVIEK 695



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 123/323 (38%), Gaps = 47/323 (14%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P   +   LL+ LCK G  ++  E +    ++   PNA TY++L               
Sbjct: 475 KPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACD 534

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + EMI+ G  P     N  I + C+   V EA    E     G  ++            
Sbjct: 535 LVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFC 594

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY  +I AL +  R+EE   L   M+  G +P   
Sbjct: 595 QKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPV 654

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V+   C  G+VE+  K LE+M ++        YN  ++ LC   N ++A +L G++
Sbjct: 655 TYRTVIHQYCRMGRVEDLLKLLEKMLSRQECR--TAYNQVIEKLCSFGNLEQAYKLLGKV 712

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +         T +MLI  Y   G P  ++     M  R    D+     +   L    K 
Sbjct: 713 LRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKS 772

Query: 429 EEACFLLEEVVNKGLKLPYRKFD 451
           EEA  L+   V +G   P  + D
Sbjct: 773 EEADKLILRFVERGRISPQCQLD 795


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 187/412 (45%), Gaps = 37/412 (8%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           ++ DS + +++R + + + A   F     Q+ + H    Y  ++D L+    +   F  V
Sbjct: 91  ISHDSAIDLIKR-EKDPQHALNIFNMVSEQNGFQHNNATYATILDKLA----RCNNFHAV 145

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYT-----EKIK---------VKTQPEINALNLLL 184
             +L  M      F    + + ++K ++     EK+          V+ +P   AL+  L
Sbjct: 146 DRVLHQMTYETCKFHE-GIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCL 204

Query: 185 DALCKCGLVDYAETICKRVKNKV--KPNANTYNIL------------GMQTLEEMIQMGH 230
           + L     VD A  +    K  +  KPN   +NIL              + +EEM     
Sbjct: 205 NLLLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEF 264

Query: 231 A-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           + P+  TY+T +D  C+   V EA DLFE M ++   +  P   TY ++I    +  + +
Sbjct: 265 SYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPL--TYNVLINGFCRGGKPD 322

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
              +++  M ++GC P+V  Y  +++G+C  GK+E+A   L E+   G  PD VTY   +
Sbjct: 323 RARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLI 382

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC N   DEA+ L   M E GC     T+N+L+      G+ + A +   ++ ++G  
Sbjct: 383 NFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVY 442

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            +  +Y ++++ L    +++ A  LL  ++ +G +  Y   +  L+ L   G
Sbjct: 443 LNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAG 494



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 24/318 (7%)

Query: 142 LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK 201
           L+ +  +N+V +   +LL   +  T K      P +   N+L+   CK G +D A  I +
Sbjct: 204 LNLLLDSNRVDLARKLLLHAKRDLTRK------PNVCVFNILVKYHCKNGDLDSAFEIVE 257

Query: 202 RVKNK--VKPNANTYNIL------------GMQTLEEMIQMGH-APDNFTYNTAIDTFCK 246
            ++N     PN  TY+ L                 EEM+   H  PD  TYN  I+ FC+
Sbjct: 258 EMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCR 317

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
                 A ++ +FM++ G     P    Y+ ++  L +  ++E+   +L  +  SG  PD
Sbjct: 318 GGKPDRARNVIQFMKSNGCY---PNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPD 374

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             TY  ++  +C  GK +EA + LEEM   G   D VT+N  L  LC     +EAL +  
Sbjct: 375 AVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVE 434

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           ++ + G + +  +Y ++++   +  E   A E    M +RG      T   ++  L    
Sbjct: 435 KLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAG 494

Query: 427 KVEEACFLLEEVVNKGLK 444
            V++A   L ++V  G +
Sbjct: 495 MVDDAAVALFDLVEMGFQ 512


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 137/297 (46%), Gaps = 18/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M+ K Y +  ++  +  I+  N+L+ A CK G V+ A+ +   +++K V P+  TYN L 
Sbjct: 183 MVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLI 242

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       +   + M + G  PD  TYN+ I  FCK   + EA  LF+ +R     
Sbjct: 243 SLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD---- 298

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
            ++P   TY  +I    + + +++   L   M   G  P V TY  +L  +C  G++ +A
Sbjct: 299 -ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDA 357

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            K L EM  K   PD VT N  +   C   +   AL++  RM+E G      TY  LI  
Sbjct: 358 NKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHG 417

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + ++ E DGA E    M   G +    TY  ++DG  +    E    L +E V KGL
Sbjct: 418 FCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGL 474



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 174/411 (42%), Gaps = 47/411 (11%)

Query: 79  LTTDSVVGVLQRFQFEEK---IAFRFFMWAGHQ-DNYAHEPLAYNLMIDILSSTKY---- 130
           LT  ++  VL +     +   +++  F W      NY H   +   MI IL+  K+    
Sbjct: 38  LTASTLHQVLYQLSLHSQGPCLSWALFKWIESSIPNYKHSLQSSWTMIHILTKFKHLKTA 97

Query: 131 -------KAKQFRLVCSMLDYMKR-------NNKVFVPVDVLLMILKQYTEKIKV----- 171
                    + F    S+L  + R       N+ VF  + ++    K   E I+V     
Sbjct: 98  QSLLEKIAYRDFLSTQSVLSALVRLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMM 157

Query: 172 --KTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217
               +P ++A  +LL++L K  L D    + K++    V+ N + YN+L           
Sbjct: 158 VNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVE 217

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                L EM      PD FTYNT I  +CK  M  EA  + + M  +G     P   TY 
Sbjct: 218 KADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGI---KPDIVTYN 274

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I    +  RM E   L   + ++   P+  TY  +++G C    +++A +  EEM  +
Sbjct: 275 SLIHGFCKEGRMREAMRLFKEIRDAT--PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQ 332

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P +VTYN  L+ LC+     +A +L   M E    P   T N LI+ Y ++G+   A
Sbjct: 333 GLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSA 392

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            +  + M + G   D  TY  +I G     +++ A  LL  +++ G    Y
Sbjct: 393 LKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSY 443



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 133/321 (41%), Gaps = 25/321 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           +P+I   N L+   CK G +  A  + K +++   PN  TY  L             ++ 
Sbjct: 267 KPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT-PNHVTYTTLIDGYCRLNDLDQALRL 325

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM   G  P   TYN+ +   C+   + +A  L   M  K     + T  T   +I A
Sbjct: 326 REEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNT---LINA 382

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   M+    +   M+ +G   D  TYK ++ G C   +++ A + L  M + G+ P 
Sbjct: 383 YCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPS 442

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+  +   C+ +N +  L+L    +  G       Y  LI  + +  + D A + + 
Sbjct: 443 YCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFS 502

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M ++G   D   Y  +    +   K   A  LL+E+  + L +  + + +  +  S  G
Sbjct: 503 LMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRA--LNASYAG 560

Query: 462 DLGAIHKLSDHMRKFYNPVIA 482
           D  +I  L      F+N V+A
Sbjct: 561 D-NSILSL------FWNHVVA 574


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 173/389 (44%), Gaps = 35/389 (8%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
            DS   P+    ++  L+    + K+A +FF WAG Q  + H   +Y +++ ++    ++
Sbjct: 123 FDSALAPIWVSKILLGLRE---DPKLALKFFKWAGSQVGFRHTTESYCIIVHLV----FR 175

Query: 132 AKQFRLVCSMLDYMKRNNKV---FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
           A+ +      +  +  N+++   F   ++  M+    T  I V         ++L     
Sbjct: 176 ARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWS--TRNICVSGS---GVFDVLFSVFV 230

Query: 189 KCGLVDYAETICKRVKN-KVKPNANTYNILGMQT------------LEEMIQMGHAPDNF 235
           + GL++ A     R++N +  P A + N L  +               +MI  G AP  F
Sbjct: 231 ELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVF 290

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TYN  ID  CK   +  +  LF  MR  G    SP   TY  +I    +   +EE  SL 
Sbjct: 291 TYNVMIDYLCKEGDLENSRRLFVQMREMGL---SPDVVTYNSLIDGYGKVGSLEEVASLF 347

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M + GC+PD+ TY  ++   C   K+  A+++  EM N G  P++VTY+  +   C  
Sbjct: 348 NEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKE 407

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
                A++L+  M   G  P+  TY  LI    + G    A++  ++M + G   ++ TY
Sbjct: 408 GMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTY 467

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             ++DGL    ++ EA    EEV    LK
Sbjct: 468 TALLDGLCKAGRMIEA----EEVFRSMLK 492



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 16/297 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL- 217
           ++ K + + I     P +   N+++D LCK G ++ +  +  +++   + P+  TYN L 
Sbjct: 272 LVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLI 331

Query: 218 ----GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                + +LEE       M  +G  PD  TYN  I+ +CK   +  A + F  M+  G  
Sbjct: 332 DGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGL- 390

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY+ +I A  +   M+    L   M  +G LP+  TY  +++  C AG + EA
Sbjct: 391 --KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEA 448

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           +K L +M   G   +IVTY   L  LC      EA  ++  M++ G  P+ Q Y  L+  
Sbjct: 449 WKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHG 508

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y +    + A +   +M +     D+  Y  +I G     K+EE   +LEE+ ++G+
Sbjct: 509 YIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 565



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 157/384 (40%), Gaps = 24/384 (6%)

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKV--FVPVDVLLMILK 163
           A     YN+MID L          RL   M       D +  N+ +  +  V  L  +  
Sbjct: 286 APSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVAS 345

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----- 217
            + E   V   P+I   N L++  CK   +  A E   +   N +KPN  TY+ L     
Sbjct: 346 LFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFC 405

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   ++   +M + G  P+ FTY + ID  CKA  +TEA  L   M   G  ++  
Sbjct: 406 KEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLN-- 463

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY  ++  L +  RM E   +   M+  G  P+   Y  ++ G   A ++E+A K L
Sbjct: 464 -IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKIL 522

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           ++M      PD++ Y   +   C  +  +E   +   M   G   +      +I  YF+ 
Sbjct: 523 KQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKA 582

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+   A   + EM   G    + TYCV+IDGL     VE A      +++ GL+     +
Sbjct: 583 GKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVY 642

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMR 474
            S +  L     + +  KL D M+
Sbjct: 643 TSLIDGLCKNNCIESAKKLFDEMQ 666



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 142/358 (39%), Gaps = 58/358 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   + L+DA CK G++  A +      +  + PN  TY  L              +
Sbjct: 391 KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 450

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M+Q G   +  TY   +D  CKA  + EA ++F  M   G    SP  + Y  ++ 
Sbjct: 451 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI---SPNQQVYTALVH 507

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL--------------------- 319
             ++ +RME+   +L  M      PD+  Y  ++ G C                      
Sbjct: 508 GYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 567

Query: 320 --------------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                         AGK  +A  F +EM + G    IVTY   +  LC     + A+  +
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYF 627

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            RM+ +G  P+V  Y  LI    +    + A + + EM  RG   D+  +  +IDG    
Sbjct: 628 CRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKH 687

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483
             ++EA  L+  +    ++     + S +   S  G+L          RKF+N +I +
Sbjct: 688 GNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGEL-------HQARKFFNEMIEK 738



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 130/307 (42%), Gaps = 47/307 (15%)

Query: 183 LLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           LLD LCK G +++  E     +K+ + PN   Y  L             M+ L++M +  
Sbjct: 470 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN 529

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG----STISS---------------- 269
             PD   Y + I   C  R + E   + E M+++G      IS+                
Sbjct: 530 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL 589

Query: 270 ------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
                        T  TY ++I  L +   +E        M++ G  P+V+ Y  +++G+
Sbjct: 590 NFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 649

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C    +E A K  +EM  +G  PDI  +   +     + N  EAL L  RM E+     +
Sbjct: 650 CKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDL 709

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             Y  L+S + + GE   A + ++EM ++G   ++V   C++ +  +   +++EA  L  
Sbjct: 710 HVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLRE-YYKRGQLDEAIELKN 768

Query: 437 EVVNKGL 443
           E+   GL
Sbjct: 769 EMERMGL 775


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 179/439 (40%), Gaps = 72/439 (16%)

Query: 57  AIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
            IID+ N    +E AL+S  VP  + S+V  + +      + FRFF+WA  +       +
Sbjct: 38  TIIDSVNP---IEPALES-KVPFLSPSIVTYIIKNPPNSLLGFRFFIWAS-KFRRLRSWV 92

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN--------------------------- 149
           ++N++ID+L     K   F L   +L  +KR                             
Sbjct: 93  SHNMIIDML----IKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVES 148

Query: 150 --------------------KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK 189
                                V V  +V+L+ L  Y   +K+   P I   ++L+D +CK
Sbjct: 149 FEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCK 208

Query: 190 CGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFT 236
            G    A +   +  + ++ PN  TY I+              +    M   G  PD+ T
Sbjct: 209 SGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVT 268

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN  +  FCK   V EA  L ++       +     + Y+ +I  L +  R E+      
Sbjct: 269 YNALLHGFCKLGRVDEALGLLKYFEKDRYVLDK---QGYSCLIDGLFRARRFEDAQVWYR 325

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M      PDV  Y  +++G+  AGK ++A + L EM  +G  PD   YN  +K  CD  
Sbjct: 326 KMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLG 385

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             DEA  L+  + +  C+ S  TY +LI      G    A + ++EM+K GC   V T+ 
Sbjct: 386 LLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFN 445

Query: 417 VMIDGLFDCSKVEEACFLL 435
            +IDG      +E+A  L 
Sbjct: 446 ALIDGFCKAGNIEKAQLLF 464



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 135/286 (47%), Gaps = 29/286 (10%)

Query: 183 LLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+D L +    + A+   +++ ++ +KP+   Y I+             ++ L EM + G
Sbjct: 307 LIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERG 366

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD   YN  I  +C   ++ EA  L     +K    SS  A TY I+I  + ++  + 
Sbjct: 367 LVPDTHCYNALIKGYCDLGLLDEAKSL-HLEISKNDCFSS--ACTYTILICGMCRSGLVG 423

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA----YK---------FLEEMGNK 336
           +   +   M   GC P V T+  +++G C AG +E+A    YK         FL      
Sbjct: 424 DAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGA 483

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
               D  +    ++ LCD+    +A  +  ++ + G  P++ TYN+LI  + + G  +GA
Sbjct: 484 NRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGA 543

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           F+ + E+  +G + D  TY  +I+GL   ++ E+A  +L++++  G
Sbjct: 544 FKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNG 589



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 178/412 (43%), Gaps = 66/412 (16%)

Query: 59  IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAY 118
           I +S  Y+ +      LG     D  +G+L+ F+               +D Y  +   Y
Sbjct: 263 IPDSVTYNALLHGFCKLG---RVDEALGLLKYFE---------------KDRYVLDKQGY 304

Query: 119 NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL--MILKQYTEKIKVKTQ-- 174
           + +ID L    ++A++F         M  +N   +  DV+L  +++K  ++  K K    
Sbjct: 305 SCLIDGL----FRARRFEDAQVWYRKMTEHN---IKPDVILYTIMMKGLSKAGKFKDALR 357

Query: 175 -----------PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM- 219
                      P+ +  N L+   C  GL+D A+++   + KN    +A TY IL  GM 
Sbjct: 358 LLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMC 417

Query: 220 ---------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE----------FM 260
                    Q   EM + G  P   T+N  ID FCKA  + +A  LF           F+
Sbjct: 418 RSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFL 477

Query: 261 R-TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           R ++G+     TA +   M+  L  +  + + +++L  + +SG  P++ TY  ++ G C 
Sbjct: 478 RLSQGANRVLDTA-SLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCK 536

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           AG +  A+K  +E+  KG  PD VTY   +  L      ++A  +  ++++ GC P  + 
Sbjct: 537 AGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEV 596

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           Y   ++      +   AF  W +  +    +D +     ++  F+  +VEEA
Sbjct: 597 YKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVL-KSVEENFEKGEVEEA 647



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 121/302 (40%), Gaps = 64/302 (21%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN------ANTYNILG 218
           + E  K    P +   N L+D  CK G ++ A+ +  +++    P+           +L 
Sbjct: 429 FNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLD 488

Query: 219 MQTLEEMIQM--------------------GHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             +L+ M++                     G AP+  TYN  I  FCKA  +  A  LF+
Sbjct: 489 TASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFK 548

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            ++ KG    SP + TY  +I  L+  +R E+ F++L  ++ +GC P    YK  +   C
Sbjct: 549 ELQLKGL---SPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSC 605

Query: 319 ------LA----------------------------GKVEEAYKFLEEMGNKGYPPDIVT 344
                 LA                            G+VEEA + L EM  K     +  
Sbjct: 606 RRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAP 665

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW-HEM 403
           Y  +L  LC     +EAL+++  + E     +  +   LI    ++G  D A E + + +
Sbjct: 666 YTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVGNLDLAAEIFLYTI 725

Query: 404 DK 405
           DK
Sbjct: 726 DK 727


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 133/286 (46%), Gaps = 17/286 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P I   N +L  LC+ G+ D A  + K + +  V P+  ++ IL             ++
Sbjct: 223 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 282

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM   G  PD  +++  I  F +   +  A      MR  G     P    Y ++I 
Sbjct: 283 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV---PDGVIYTMVIG 339

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   M +   +   M+  GCLPDV TY  +L G+C   ++ +A   L EM  +G PP
Sbjct: 340 GFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPP 399

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+ T+   +   C     D+AL+L+  M+     P + TYN LI      G+ D A + W
Sbjct: 400 DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLW 459

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            +M  R    +  TY ++ID   +  +VE+A   L+E++NKG+ LP
Sbjct: 460 DDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI-LP 504



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 17/302 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L+   E +     P++   N LL+ LCK   +  AE +   ++ + V P+  T+  L   
Sbjct: 351 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 410

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q  + M+     PD  TYNT ID  C+   + +A DL++ M ++     
Sbjct: 411 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIF-- 468

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+I+I +  +  ++E+ F  L  MIN G LP++ TY  +++G C +G V +  K
Sbjct: 469 -PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 527

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           FL++M      PD++TYN  +          +A +L   M +    P V TYNMLI+ + 
Sbjct: 528 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 587

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G    A   + +M  +G   D  TY  MI+G       +EA  L +E++ +G   P  
Sbjct: 588 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA-PDD 646

Query: 449 KF 450
           KF
Sbjct: 647 KF 648



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 51/360 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           LK Y E      +P++ + + L+    + G +D+A    + ++   + P+   Y ++   
Sbjct: 281 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 340

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     ++  +EM+  G  PD  TYNT ++  CK R + +A  L   MR +G    
Sbjct: 341 FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV--- 397

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG------- 321
            P   T+  +I       ++++   L   M+N    PD+ TY  +++GMC  G       
Sbjct: 398 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAND 457

Query: 322 ----------------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
                                       +VE+A+ FL+EM NKG  P+I+TYN  +K  C
Sbjct: 458 LWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYC 517

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            + N  +  +   +M+     P + TYN LI  Y +  +   AF+  + M+K     DV 
Sbjct: 518 RSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVV 577

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY ++I+G      V+EA ++ E++  KG++     + S +      G+     +L D M
Sbjct: 578 TYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 637



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 3/242 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  T+N  +D   +A     A  L + M +KG     P   TY  ++  L ++   ++ 
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGL---KPGIVTYNSVLKGLCRSGMWDKA 245

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           + +   M + G  PDV ++  ++ G C  G++EEA K  +EM ++G  PD+V+++C + +
Sbjct: 246 WEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGL 305

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                  D A+     M   G  P    Y M+I  +   G    A     EM   GC  D
Sbjct: 306 FARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPD 365

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           V TY  +++GL    ++ +A  LL E+  +G+      F + +    + G L    +L D
Sbjct: 366 VVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFD 425

Query: 472 HM 473
            M
Sbjct: 426 TM 427


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 15/274 (5%)

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEE 224
           +  N+L+ A  K G++D A  +   ++ + V+P+  TY+ L             M+   +
Sbjct: 440 HCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQ 499

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MI +G  P+   Y++ I  FC    + +A +L   M +KG  I  P    ++ +I +L  
Sbjct: 500 MISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG--IPRPNIVFFSSIIHSLCN 557

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+ +   +   +I+ G  P + T+  +++G CL GK+E+A+  L+ M + G  PD+VT
Sbjct: 558 EGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVT 617

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +   C +   D+ L L+  M+     P+  TY++++   F  G    A + +HEM 
Sbjct: 618 YNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMI 677

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             G A D+DTY +++ GL      +EA  L  ++
Sbjct: 678 DSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKL 711



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 17/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL--GMQT---------- 221
           P I   N  + +LCK G    AE I + +  K   P+  +Y+IL  G  T          
Sbjct: 367 PGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNL 426

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M   G   +   +N  I    K  M+ EA  +F  M+ +G     P   TY+ +I A
Sbjct: 427 FHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGV---RPDVVTYSTLISA 483

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-P 340
             +  R+ +       MI+ G  P+   Y  ++ G C+ G + +A + + EM +KG P P
Sbjct: 484 FCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRP 543

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +IV ++  +  LC+     +A  ++  +I +G  P++ T+N LI  Y  +G+ + AF   
Sbjct: 544 NIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 603

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             M   G   DV TY  ++ G     K+++   L  E+++K +K
Sbjct: 604 DAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVK 647



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 3/242 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + EM+Q G  PD  TYN+ +D  CKAR + +A  +   M  KG     P   TY  +I  
Sbjct: 287 INEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGV---EPDGLTYTAIIHG 343

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
              +   +E   +   M + G +P + T+   +  +C  G+ ++A +  + M  KG+ PD
Sbjct: 344 YSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPD 403

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V+Y+  L          +   L+  M + G   +   +N+LIS + + G  D A   + 
Sbjct: 404 LVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFT 463

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM  +G   DV TY  +I       ++ +A     ++++ GL+     + S +    + G
Sbjct: 464 EMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHG 523

Query: 462 DL 463
           DL
Sbjct: 524 DL 525



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 138/312 (44%), Gaps = 25/312 (8%)

Query: 181 NLLLDALCKCGLVDYA-ETICKRVKN-KVKPNANTYNIL------------GMQTLEEMI 226
           N  L  LC     D A + +  R+ +    PNA +YN +             +  ++ M 
Sbjct: 195 NTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMA 254

Query: 227 QMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           + G   +PD  ++NT I  F K   V++A +L   M  KG     P   TY  ++ AL +
Sbjct: 255 KEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGV---EPDVVTYNSIVDALCK 311

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              M++   +L  M++ G  PD  TY  ++ G   +G  +E+ K   +M +KG  P IVT
Sbjct: 312 ARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVT 371

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           +N F+  LC +    +A  ++  M   G  P + +Y++L+  Y   G        +H M 
Sbjct: 372 FNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMA 431

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            +G   +   + ++I        ++EA  +  E+  +G++     + + +     +G   
Sbjct: 432 DKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMG--- 488

Query: 465 AIHKLSDHMRKF 476
              +L+D M KF
Sbjct: 489 ---RLADAMEKF 497



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 52/348 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           +TE      +P++   + L+ A C+ G L D  E   + +   ++PN   Y+ L      
Sbjct: 462 FTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCM 521

Query: 218 ------GMQTLEEMIQMG-HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   + + EM+  G   P+   +++ I + C    V +A D+F  +   G     P
Sbjct: 522 HGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGD---RP 578

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE----- 325
           T  T+  +I       +ME+ F +L  M++ G  PDV TY  ++ G C +GK+++     
Sbjct: 579 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILF 638

Query: 326 ------------------------------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
                                         A K   EM + G   DI TY   LK LC N
Sbjct: 639 REMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN 698

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              DEA+ L+ ++  + C   +   N +I+  +++   + A + +  +   G   +V TY
Sbjct: 699 DLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTY 758

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            VMI  L     VEEA  +   +   G     R  +  +  L   GD+
Sbjct: 759 GVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 806



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 123/290 (42%), Gaps = 25/290 (8%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E ++   +P++   N ++DALCK   +D AE +                      L +M+
Sbjct: 289 EMVQKGVEPDVVTYNSIVDALCKARAMDKAELV----------------------LRQMV 326

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  PD  TY   I  +  +    E+A +F  M +KG     P   T+   + +L ++ 
Sbjct: 327 DKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLI---PGIVTFNSFMSSLCKHG 383

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R ++   +  +M   G +PD+ +Y  +L G    G+  +       M +KG   +   +N
Sbjct: 384 RSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFN 443

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +         DEA+ ++  M   G  P V TY+ LIS +  +G    A E + +M   
Sbjct: 444 ILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISI 503

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
           G   +   Y  +I G      + +A  L+ E+++KG+  P   F S ++ 
Sbjct: 504 GLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIH 553



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR-LY 365
           V TY  +++  C A + +    F   +   G     +  N FLK LC  K  DEA+  L 
Sbjct: 156 VHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLL 215

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG--CAQDVDTYCVMIDGLF 423
            RM ++GC P+  +YN +I           A +    M K G  C+ DV ++  +I G F
Sbjct: 216 HRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFF 275

Query: 424 DCSKVEEACFLLEEVVNKGLK 444
              +V +AC L+ E+V KG++
Sbjct: 276 KQGEVSKACNLINEMVQKGVE 296



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 51/213 (23%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V  +P++   N L+   CK G +D    + +  +  KVKP   TY+I+          
Sbjct: 607 VSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRT 666

Query: 218 --GMQTLEEMIQMGHAPDNFTY-----------------------------------NTA 240
               +   EMI  G A D  TY                                   NT 
Sbjct: 667 SAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTV 726

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I+   K R   EA DLF  + T G     P   TY +MI  L++   +EE  ++   M  
Sbjct: 727 INALYKVRRREEANDLFAAISTSGLV---PNVSTYGVMIHNLLKEGSVEEADTMFSSMEK 783

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           SGC P      +++  +   G + +A  ++ ++
Sbjct: 784 SGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKV 816


>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 188/448 (41%), Gaps = 55/448 (12%)

Query: 58   IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
            I+  S  +  +E+AL+   V  T+  VV +L+        A  FF W G +D Y+H    
Sbjct: 640  ILSTSMDWCLIEEALEKCTVQFTSQLVVEILRSCSLHGHAALLFFSWVGKRDGYSHTTET 699

Query: 118  YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
            YN+ I I   +K     FR + ++   M+R      P D   +++ QY            
Sbjct: 700  YNMGIKISGCSK----NFRSMRNLFFEMRRKGHPVTP-DTWTIMIMQYGRA--------- 745

Query: 178  NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------------GMQTLE 223
                     L +  L ++AE       N  KPN +TY  L               ++T  
Sbjct: 746  --------GLTEIALRNFAEMKA----NDCKPNGSTYKYLIICLCGRKGRKVDEAIKTFL 793

Query: 224  EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            EMI+ G+ PD     + +   C+   + +A    E +   G TI      +Y++ I AL 
Sbjct: 794  EMIRAGYVPDKELVESYLKCLCEVGKLLDARRCTEALCKLGFTIPL----SYSLYIRALC 849

Query: 284  QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            +  R+EE  +L+  +       D   Y  ++ G+   G+++EA + ++ M   G  P + 
Sbjct: 850  RAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPTVH 909

Query: 344  TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
             Y   +      K   +AL  + +M E GC P++ TY+ LI  +  +G    A   +  +
Sbjct: 910  VYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLL 969

Query: 404  DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              +G   D  TY + I  L    K EEA  LL E+++ G+      F + +  L+  G  
Sbjct: 970  QLKGPFPDFKTYSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMFGLNREGK- 1028

Query: 464  GAIHKLSDHMRKFYNPVIARRLALNQKR 491
               H L+       N V+ ++LAL  KR
Sbjct: 1029 ---HSLA-------NIVLQKKLALKSKR 1046



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/467 (22%), Positives = 193/467 (41%), Gaps = 47/467 (10%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
           ++ S  V ++ K+  A I   +    ME+ L+  G    ++ V  VL+R      +A RF
Sbjct: 136 NDVSPMVDEITKIVRADIGTGS----MEEKLEKSGFVFDSEVVEKVLKRCFKVPHLALRF 191

Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM-----KRNNKVFVPV- 155
           F W   ++   H    YN M+ I      +AK+F LV  ++  M     KR+ K +  + 
Sbjct: 192 FNWVKFRNGGCHTTRTYNTMLYIAG----EAKEFGLVEKLIGEMEEKGCKRDIKTWTILI 247

Query: 156 ----------DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN 205
                       LL++ K +    K   +P++ A  +L+ +LC     D A    K +  
Sbjct: 248 SHYGKAKLIGKALLILEKMW----KSGCEPDVAAYMILIRSLCNAQKADIALEFYKEMVQ 303

Query: 206 K------------VKPNANTYNILGMQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
           K            +   A + +I G+Q + ++MI+    P+   ++  + +FC A  + E
Sbjct: 304 KEMGLDMSLYELLLTCLAGSGDIAGVQLVADDMIRRSQIPERDVFSCMLKSFCIAGRIRE 363

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A +L   +  K  T+       +  ++  L + DR+ +   ++  M     + D   Y  
Sbjct: 364 ALELIRDLNDKNLTLE---PNDFETLVKGLCRADRITDAAEIVDIMKKRKVV-DAKVYGI 419

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++ G      + +A+  L+ M   GY P I TY   ++ L       +  +LY  M+E G
Sbjct: 420 IISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEMLERG 479

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P       +++ +        A++ ++ M +RG      +Y V I  L   S+ +E  
Sbjct: 480 VEPDSVAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKSYSVFIKELCKISRTDEVI 539

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR--KFY 477
            +L E+    + +    F+  +  L   G+   + K+    R  KFY
Sbjct: 540 KVLNEMQASKIIIGDEVFNWVISYLEKKGETEMVKKVMQMQRTCKFY 586


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 205/477 (42%), Gaps = 56/477 (11%)

Query: 7   VSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYD 66
           + P+ +  A+    I  K+L +   ++P       DESS S     +++  I+      D
Sbjct: 16  LKPSSSSIAIFSTFI--KNLSTASEQLP------LDESSQS----EEIWNVIVGRDGDRD 63

Query: 67  NMEKALDSLG-------VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYN 119
           + +     L        V L+   V  +L RF+ + K A     WA     + H   AY+
Sbjct: 64  SEDDVFKRLSNDEICNRVNLSDGLVYKLLHRFRDDWKSALGVLNWAESCKGHKHSNDAYD 123

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK------QYTEKIKV-- 171
           + +DIL     KAK++  +   ++ M+ +    V ++ +  I++      ++ E + +  
Sbjct: 124 MAVDILG----KAKKWDRLKVFVERMRGDK--LVTLNTIAKIMRRFAGAGEWEEAVGIFD 177

Query: 172 -----KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
                  +    ++NLLLD LCK   V+ A  +   +K+ + PNA+T+NI          
Sbjct: 178 KLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLELKSHITPNAHTFNIFIHGWCKANR 237

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
               + T++EM   G  P   +Y T I  +C+     +  ++   M   G   S P + T
Sbjct: 238 VEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLSEMEANG---SPPNSIT 294

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEM 333
           Y  ++ +L      EE   +   M  SGC PD   Y  ++  +  +G++EEA + F  EM
Sbjct: 295 YTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEM 354

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGE 392
              G   +  TYN  + + C +   D+A+ L   M     C P V TY  L+   F+ G+
Sbjct: 355 PELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGD 414

Query: 393 PDGAFETWHEM-DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                +   EM  K   + D  TY  +I  L   +  E A  L EE++++ +   +R
Sbjct: 415 VVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANICEWAYCLFEEMISQDITPRHR 471


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 136/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           + + +++   P     N L+D  C  G ++ A +     VK  + P+ +TYN+L      
Sbjct: 266 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 325

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     ++EM + G  PD  TYN  I+ + +      A DL   M +KG     PT
Sbjct: 326 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGI---EPT 382

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L + +RM+E   L   +++ G  PDV  +  +++G C  G VE A+  L+
Sbjct: 383 HVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLK 442

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  K  PPD VT+N  ++  C     +EA  L   M   G  P   +YN LIS Y   G
Sbjct: 443 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRG 502

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   AF    EM   G    + TY  +I  L    + + A  LL+E+VNKG+
Sbjct: 503 DIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 554



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 149/322 (46%), Gaps = 17/322 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM---QTLEE--- 224
           +P + + N ++      G ++ A  I   ++ K ++P++ TY   I GM     LEE   
Sbjct: 205 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 264

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+++G  P+  TYNT ID +C    +  A    + M  KG     P+  TY +++ 
Sbjct: 265 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIM---PSVSTYNLLVH 321

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL    RM E   ++  M   G +PD  TY  ++ G    G  + A+    EM +KG  P
Sbjct: 322 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEP 381

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             VTY   + VL       EA  L+ ++++ G  P V  +N +I  +   G  + AF   
Sbjct: 382 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLL 441

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EMD++    D  T+  ++ G     KVEEA  LL+E+  +G+K  +  +++ +      
Sbjct: 442 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRR 501

Query: 461 GDLGAIHKLSDHMRKF-YNPVI 481
           GD+     + D M    +NP +
Sbjct: 502 GDIKDAFXVRDEMLSIGFNPTL 523



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 16/277 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +K    P ++  NLL+ AL   G +  A+ + K ++ K + P+A TYNIL        
Sbjct: 303 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 362

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                     EM+  G  P + TY + I    +   + EA DLFE +  +G    SP   
Sbjct: 363 NAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV---SPDVI 419

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  MI     N  +E  F LL  M      PD  T+  +++G C  GKVEEA   L+EM
Sbjct: 420 MFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 479

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PD ++YN  +       +  +A  +   M+ +G  P++ TYN LI    +  E 
Sbjct: 480 KXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 539

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
           D A E   EM  +G + D  TY  +I+G+ +   + E
Sbjct: 540 DLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 576



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 3/219 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M  +G  P+  +YNT I  +     +  A  + + MR KG     P + TY  +I  + +
Sbjct: 199 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG---IEPDSYTYGSLISGMCK 255

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+EE   L   M+  G +P+  TY  +++G C  G +E A+ + +EM  KG  P + T
Sbjct: 256 EGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 315

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +  L       EA  +   M + G  P   TYN+LI+ Y   G    AF+  +EM 
Sbjct: 316 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEML 375

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +G      TY  +I  L   ++++EA  L E+++++G+
Sbjct: 376 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 414



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 3/209 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           + +A +   FM   G     P   +Y  +I        +E    +L  M   G  PD  T
Sbjct: 189 LKKAREFIGFMEGLGF---KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYT 245

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ GMC  G++EEA    ++M   G  P+ VTYN  +   C+  + + A      M+
Sbjct: 246 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 305

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           + G  PSV TYN+L+   F  G    A +   EM K+G   D  TY ++I+G   C   +
Sbjct: 306 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 365

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            A  L  E+++KG++  +  + S +  LS
Sbjct: 366 RAFDLHNEMLSKGIEPTHVTYTSLIYVLS 394



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 82/157 (52%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++++    +G M   G  P+V +Y  ++ G    G +E A + L+ M  KG  PD  TY 
Sbjct: 188 KLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYG 247

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  +C     +EA  L+ +M+E+G  P+  TYN LI  Y   G+ + AF    EM K+
Sbjct: 248 SLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 307

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           G    V TY +++  LF   ++ EA  +++E+  KG+
Sbjct: 308 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 344


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 137/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           + + +++   P     N L+D  C  G ++ A +     VK  + P+ +TYN+L      
Sbjct: 342 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 401

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     ++EM + G  PD  TYN  I+ + +     +A DL   M +KG     PT
Sbjct: 402 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGI---EPT 458

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L + +RM+E   L   +++ G  PDV  +  +++G C  G VE A+  L+
Sbjct: 459 HVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLK 518

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  K  PPD VT+N  ++  C     +EA  L   M   G  P   +YN LIS Y   G
Sbjct: 519 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRG 578

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   AF    EM   G    + TY  +I  L    + + A  LL+E+VNKG+
Sbjct: 579 DIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 630



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 17/322 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM---QTLEE--- 224
           +P + + N ++      G ++ A  I   ++ K ++P++ TY   I GM     LEE   
Sbjct: 281 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 340

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+++G  P+  TYNT ID +C    +  A    + M  KG     P+  TY +++ 
Sbjct: 341 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIM---PSVSTYNLLVH 397

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL    RM E   ++  M   G +PD  TY  ++ G    G  ++A+    EM +KG  P
Sbjct: 398 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 457

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             VTY   + VL       EA  L+ ++++ G  P V  +N ++  +   G  + AF   
Sbjct: 458 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 517

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EMD++    D  T+  ++ G     KVEEA  LL+E+  +G+K  +  +++ +      
Sbjct: 518 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 577

Query: 461 GDLGAIHKLSDHMRKF-YNPVI 481
           GD+    ++ D M    +NP +
Sbjct: 578 GDIKDAFRVRDEMLSIGFNPTL 599



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 126/269 (46%), Gaps = 16/269 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +K    P ++  NLL+ AL   G +  A+ + K ++ K + P+A TYNIL        
Sbjct: 379 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 438

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                     EM+  G  P + TY + I    +   + EA DLFE +  +G    SP   
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV---SPDVI 495

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  M+     N  +E  F LL  M      PD  T+  +++G C  GKVEEA   L+EM
Sbjct: 496 MFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 555

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PD ++YN  +       +  +A R+   M+ +G  P++ TYN LI    +  E 
Sbjct: 556 KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 615

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           D A E   EM  +G + D  TY  +I+G+
Sbjct: 616 DLAEELLKEMVNKGISPDDSTYLSLIEGM 644



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 3/235 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM ++  +   +T+N  ++  CK   + +A +   FM   G     P   +Y  +I    
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLG---FKPNVVSYNTIIHGYS 295

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
               +E    +L  M   G  PD  TY  ++ GMC  G++EEA    ++M   G  P+ V
Sbjct: 296 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 355

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +   C+  + + A      M++ G  PSV TYN+L+   F  G    A +   EM
Sbjct: 356 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 415

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            K+G   D  TY ++I+G   C   ++A  L  E+++KG++  +  + S +  LS
Sbjct: 416 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS 470



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALV 283
           M + G  P   T N  +  F K   +  A  L+ E  R + S+    T  T+ IM+  L 
Sbjct: 205 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISS----TVYTFNIMVNVLC 260

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  ++++    +G M   G  P+V +Y  ++ G    G +E A + L+ M  KG  PD  
Sbjct: 261 KEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 320

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  +C     +EA  L+ +M+E+G  P+  TYN LI  Y   G+ + AF    EM
Sbjct: 321 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 380

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            K+G    V TY +++  LF   ++ EA  +++E+  KG+
Sbjct: 381 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 420



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 93/221 (42%)

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +LF+ +      +S  ++  + +++    +  R +E F     M   G +P + T  ++L
Sbjct: 162 ELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDML 221

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                  ++E A+    EM        + T+N  + VLC      +A    G M  +G  
Sbjct: 222 SLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFK 281

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+V +YN +I  Y   G  +GA      M  +G   D  TY  +I G+    ++EEA  L
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 341

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +++V  GL      +++ +      GDL       D M K
Sbjct: 342 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 382


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 133/286 (46%), Gaps = 17/286 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P I   N +L  LC+ G+ D A  + K + +  V P+  ++ IL             ++
Sbjct: 162 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 221

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM   G  PD  +++  I  F +   +  A      MR  G     P    Y ++I 
Sbjct: 222 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV---PDGVIYTMVIG 278

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   M +   +   M+  GCLPDV TY  +L G+C   ++ +A   L EM  +G PP
Sbjct: 279 GFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPP 338

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+ T+   +   C     D+AL+L+  M+     P + TYN LI      G+ D A + W
Sbjct: 339 DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLW 398

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            +M  R    +  TY ++ID   +  +VE+A   L+E++NKG+ LP
Sbjct: 399 DDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI-LP 443



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 140/294 (47%), Gaps = 16/294 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L+   E +     P++   N LL+ LCK   +  AE +   ++ + V P+  T+  L   
Sbjct: 290 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 349

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q  + M+     PD  TYNT ID  C+   + +A DL++ M ++     
Sbjct: 350 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIF-- 407

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+I+I +  +  ++E+ F  L  MIN G LP++ TY  +++G C +G V +  K
Sbjct: 408 -PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 466

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           FL++M      PD++TYN  +          +A +L   M +    P V TYNMLI+ + 
Sbjct: 467 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 526

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             G    A   + +M  +G   D  TY  MI+G       +EA  L +E++ +G
Sbjct: 527 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 51/360 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           LK Y E      +P++ + + L+    + G +D+A    + ++   + P+   Y ++   
Sbjct: 220 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 279

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     ++  +EM+  G  PD  TYNT ++  CK R + +A  L   MR +G    
Sbjct: 280 FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV--- 336

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG------- 321
            P   T+  +I       ++++   L   M+N    PD+ TY  +++GMC  G       
Sbjct: 337 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAND 396

Query: 322 ----------------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
                                       +VE+A+ FL+EM NKG  P+I+TYN  +K  C
Sbjct: 397 LWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYC 456

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            + N  +  +   +M+     P + TYN LI  Y +  +   AF+  + M+K     DV 
Sbjct: 457 RSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVV 516

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY ++I+G      V+EA ++ E++  KG++     + S +      G+     +L D M
Sbjct: 517 TYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 576



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 3/242 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  T+N  +D   +A     A  L + M +KG     P   TY  ++  L ++   ++ 
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGL---KPGIVTYNSVLKGLCRSGMWDKA 184

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           + +   M + G  PDV ++  ++ G C  G++EEA K  +EM ++G  PD+V+++C + +
Sbjct: 185 WEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGL 244

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                  D A+     M   G  P    Y M+I  +   G    A     EM   GC  D
Sbjct: 245 FARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPD 304

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           V TY  +++GL    ++ +A  LL E+  +G+      F + +    + G L    +L D
Sbjct: 305 VVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFD 364

Query: 472 HM 473
            M
Sbjct: 365 TM 366


>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
          Length = 525

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 193/441 (43%), Gaps = 42/441 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQF---EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDI 124
           ME AL + GV ++   +  VL+RF+F   +   A      A  +   A  P A +  + +
Sbjct: 54  MESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDRHGVAPSPFALDTALYV 113

Query: 125 LSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT----------- 173
           L     +A++F  +  +L   +R     V     +++L +  +   V+            
Sbjct: 114 LG----RARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVDSFRRLSRM 169

Query: 174 ------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLE-- 223
                   E    N LL  LC+   +  A  +   +K + K N  T+NIL  G ++ E  
Sbjct: 170 LRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLSGWKSAEDA 229

Query: 224 -----EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                EM ++G  PD  TYN+ ID  CK R V  A  L + MR K     SP   TY  +
Sbjct: 230 EAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKD---ISPDVITYTSL 286

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L    + ++   LL  M   GC PDV  Y   +    +A ++ +A+  +EEM +KG 
Sbjct: 287 IGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGL 346

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+  TYN F +      +   A +LY RM   GC+P+ Q+   ++ +    G    A E
Sbjct: 347 MPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALE 406

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA--CF-LLEEVVNKGLKLPYRKFDSYLM 455
            W +M   G         V+ D L D  K++EA  CF  + E+  K   + +R+    LM
Sbjct: 407 LWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPSNVAFRRI-KILM 465

Query: 456 QLSVIGDLGAIHKLSDHMRKF 476
           QL+   +  +I +L+  M +F
Sbjct: 466 QLANREE--SIARLTAQMAQF 484


>gi|357166306|ref|XP_003580667.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Brachypodium distachyon]
          Length = 441

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 178/402 (44%), Gaps = 44/402 (10%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL--MIDILSSTKYKAKQFR 136
           L   +V+  L  +  + + A  FF W+         P A  L   IDIL     K  +F 
Sbjct: 32  LDAAAVLETLSLYTNDWRRALDFFHWSASPAGANLPPTAATLSRAIDILG----KHFEFP 87

Query: 137 LVCSML-DYMKRNNKVFVP---------------VDVLLMILKQYTEKIKVKTQPEINAL 180
           L  S+L  +   ++  F+                VD  + + +     I ++ +    + 
Sbjct: 88  LATSLLLSHHDPSDPAFLRPALRALLNRLAAANLVDDAVRVFESTAGSIGLRDE---ASF 144

Query: 181 NLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL--GM----------QTLEEMIQ 227
           +LL+DALC    VD A  +C  +      P   T+N+L  G           Q   +M  
Sbjct: 145 HLLIDALCDHRRVDEAHHLCFGKAPPPFPPGTKTHNLLLRGWAKTRAWTRLRQHWFDMDN 204

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G A D  +Y+  +D   K+    +A  +F+ M+ K   +    A   AI  + L Q   
Sbjct: 205 RGVAKDLHSYSIYMDALAKSGKPWKAVKVFKEMKQKRLPVDI-VAYNTAIHAIGLAQG-- 261

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++    L   M+++GC P+ +T+  +++ +C  G+  E Y F+++M   G  P+++TY+C
Sbjct: 262 VDFSVRLYRQMVDAGCKPNTATFNTIVKLLCKEGRFREGYAFVQQMHKAGCEPNVLTYHC 321

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           F + L   +   E L L+ +M+E GC P + TY MLI  +   G     F  W  M+++G
Sbjct: 322 FFQYLSRPQ---EVLVLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFFVWKTMEEQG 378

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            + D   Y  +ID L +   V+ A    EE++ KGL    RK
Sbjct: 379 LSPDAFAYNTLIDALLEKGMVDLARKYDEEMLAKGLSPKPRK 420


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 137/300 (45%), Gaps = 19/300 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P     N L+D LCK   +D A  +    + +   P+  TYN L             + 
Sbjct: 79  RPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 138

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           T  +M + G+ P   ++N  I   C+AR + +A ++F  M  +      P   TY+++I 
Sbjct: 139 TFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDF---HPNLVTYSVVID 195

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++D+++E   LL  M++ GC PD+  Y  ++ G   AG+++ A   L  M ++G  P
Sbjct: 196 GLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP 255

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTY   +  LC     D+A  ++  ++   C P+V TY+ LI  Y      D   +  
Sbjct: 256 DVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVM 315

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM    C  +V TY  MI GL    + EEA  +  E+   G     R +      L +I
Sbjct: 316 REM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMI 372



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 26/268 (9%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA- 231
            QP++ +   L++ LCK G VD A                           +M+  G   
Sbjct: 42  AQPDVVSYTTLINGLCKLGRVDAA----------------------FDLFRKMVAAGGCR 79

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ FTYN  +D  CK   +  A  +    R +     +P   TY  ++ AL Q  R++E 
Sbjct: 80  PNAFTYNALVDGLCKQDRLDAARAVIAEARKRDF---APDVVTYNTLMAALFQLGRVDEA 136

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            +    M   G +P + ++  ++ G+C A ++ +A +   EM ++ + P++VTY+  +  
Sbjct: 137 LATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDG 196

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC +   DEA +L  RM+  GC P +  Y  L+  +   G  D A      M  +GC  D
Sbjct: 197 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 256

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           V TY V+ID L    +V++A  +  E+V
Sbjct: 257 VVTYTVVIDKLCKVGRVDDAHEIFRELV 284



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 25/290 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA-PDNFTYNT 239
           +++L  LC+CG V  A                      ++  +  +++ HA PD  +Y T
Sbjct: 14  SIILQGLCRCGRVAQA----------------------LEHFDASLELAHAQPDVVSYTT 51

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I+  CK   V  A DLF  M   G     P A TY  ++  L + DR++   +++    
Sbjct: 52  LINGLCKLGRVDAAFDLFRKMVAAGG--CRPNAFTYNALVDGLCKQDRLDAARAVIAEAR 109

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
                PDV TY  ++  +   G+V+EA     +M  +GY P +V++N  +  LC  +   
Sbjct: 110 KRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLA 169

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +AL ++  MI+    P++ TY+++I    +  + D A +    M   GC  D+  Y  ++
Sbjct: 170 DALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLV 229

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            G     +++ A  LL  +V++G       +   + +L  +G +   H++
Sbjct: 230 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEI 279



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 3/236 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G   ++ T +  +   C+   V +A + F+         + P   +Y  +I  L +  R+
Sbjct: 5   GMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAH--AQPDVVSYTTLINGLCKLGRV 62

Query: 289 EECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +  F L   M+ +G C P+  TY  +++G+C   +++ A   + E   + + PD+VTYN 
Sbjct: 63  DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNT 122

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  L      DEAL  + +M E G  P++ ++N +I+          A E ++EM  R 
Sbjct: 123 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 182

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              ++ TY V+IDGL    +++EA  LL+ +V++G +     +   ++  S  G L
Sbjct: 183 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRL 238



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
           VD  L    Q TE+  V   P + + N ++  LC+   L D  E   + +     PN  T
Sbjct: 133 VDEALATFTQMTEEGYV---PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 189

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+++              Q L+ M+  G  PD   Y   +  F  A  +  A  L   M 
Sbjct: 190 YSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMV 249

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           ++G     P   TY ++I  L +  R+++   +   ++ + C P+V TY  ++ G C A 
Sbjct: 250 SQGCI---PDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRAS 306

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +V+E  K + EM  +   P++VTYN  +  L      +EA  ++  M E G  P  +TY 
Sbjct: 307 RVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYR 363

Query: 382 ML 383
            L
Sbjct: 364 GL 365



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 19/204 (9%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILG 218
           L+ + E I     P +   ++++D LCK   +D A+ +  R V    +P+   Y   +LG
Sbjct: 172 LEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLG 231

Query: 219 MQT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L  M+  G  PD  TY   ID  CK   V +A ++F   R   +   
Sbjct: 232 FSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIF---RELVANKC 288

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP   TY+ +I    +  R++E   ++  M    C P+V TY  ++ G+ +  + EEAY 
Sbjct: 289 SPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYG 345

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVL 352
              EM   G+ PD  TY    + L
Sbjct: 346 MFREMSECGFVPDARTYRGLKRAL 369


>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
 gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
          Length = 531

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 193/441 (43%), Gaps = 42/441 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQF---EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDI 124
           ME AL + GV ++   +  VL+RF+F   +   A      A  +   A  P A +  + +
Sbjct: 60  MESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDRHGVAPSPFALDTALYV 119

Query: 125 LSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT----------- 173
           L     +A++F  +  +L   +R     V     +++L +  +   V+            
Sbjct: 120 LG----RARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVDSFRRLSRM 175

Query: 174 ------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLE-- 223
                   E    N LL  LC+   +  A  +   +K + K N  T+NIL  G ++ E  
Sbjct: 176 LRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLSGWKSAEDA 235

Query: 224 -----EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                EM ++G  PD  TYN+ ID  CK R V  A  L + MR K     SP   TY  +
Sbjct: 236 EAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKD---ISPDVITYTSL 292

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L    + ++   LL  M   GC PDV  Y   +    +A ++ +A+  +EEM +KG 
Sbjct: 293 IGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGL 352

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+  TYN F +      +   A +LY RM   GC+P+ Q+   ++ +    G    A E
Sbjct: 353 MPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALE 412

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA--CF-LLEEVVNKGLKLPYRKFDSYLM 455
            W +M   G         V+ D L D  K++EA  CF  + E+  K   + +R+    LM
Sbjct: 413 LWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPSNVAFRRI-KILM 471

Query: 456 QLSVIGDLGAIHKLSDHMRKF 476
           QL+   +  +I +L+  M +F
Sbjct: 472 QLANREE--SIARLTAQMAQF 490


>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
          Length = 858

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 193/441 (43%), Gaps = 42/441 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQF---EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDI 124
           ME AL + GV ++   +  VL+RF+F   +   A      A  +   A  P A +  + +
Sbjct: 60  MESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDRHGVAPSPFALDTALYV 119

Query: 125 LSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT----------- 173
           L     +A++F  +  +L   +R     V     +++L +  +   V+            
Sbjct: 120 LG----RARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRETVDSFRRLSRM 175

Query: 174 ------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLE-- 223
                   E    N LL  LC+   +  A  +   +K + K N  T+NIL  G ++ E  
Sbjct: 176 LRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNILLSGWKSAEDA 235

Query: 224 -----EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                EM ++G  PD  TYN+ ID  CK R V  A  L + MR K     SP   TY  +
Sbjct: 236 EAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKD---ISPDVITYTSL 292

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L    + ++   LL  M   GC PDV  Y   +    +A ++ +A+  +EEM +KG 
Sbjct: 293 IGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGL 352

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+  TYN F +      +   A +LY RM   GC+P+ Q+   ++ +    G    A E
Sbjct: 353 MPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALE 412

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA--CF-LLEEVVNKGLKLPYRKFDSYLM 455
            W +M   G         V+ D L D  K++EA  CF  + E+  K   + +R+    LM
Sbjct: 413 LWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPSNVAFRRI-KILM 471

Query: 456 QLSVIGDLGAIHKLSDHMRKF 476
           QL+   +  +I +L+  M +F
Sbjct: 472 QLANREE--SIARLTAQMAQF 490


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 167  EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
            EK+K   + ++    +++DALCK G+   A +   + +   + P+   Y+ L        
Sbjct: 1075 EKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFG 1134

Query: 218  ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 ++  +EM   G + D +TYN+ I    +A +  E       M  +G    SP A 
Sbjct: 1135 RLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF---SPDAF 1191

Query: 274  TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            T+ I+I  L +  ++ E   +L  M + G  PD+ TY  ++ G+CL G++E+A K  E +
Sbjct: 1192 TFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESL 1251

Query: 334  GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             ++G   ++ +YN  +   C ++  DEA R +  M   G  PS  TYN LI    + G  
Sbjct: 1252 ADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRV 1311

Query: 394  DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
              A + + EM   G    + TYCV++DGL     +EEA  L + +
Sbjct: 1312 RTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSI 1356



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 16/251 (6%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            +P+I   N L++ LC  G ++ A  + + + ++ +K N  +YNIL              +
Sbjct: 1222 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 1281

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EEM   G  P   TYNT I   C++  V  A  LF  M+T G  +      TY +++ 
Sbjct: 1282 FFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK---LSTYCVLLD 1338

Query: 281  ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             L +N  +EE   L   +  +   P++  +  +L+GMC AGK+EEA+K  +E+   G  P
Sbjct: 1339 GLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEP 1398

Query: 341  DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            D + YN  +  LC+     EA++L  +M E GC P   T+N++I    +  E   A +  
Sbjct: 1399 DTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 1458

Query: 401  HEMDKRGCAQD 411
             EM  R  + D
Sbjct: 1459 EEMRNRNFSPD 1469



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 16/296 (5%)

Query: 162  LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILG 218
            L  ++E I     P++   + L+D LC+ G +  A    K ++ + +  +  TYN  I G
Sbjct: 1105 LDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHG 1164

Query: 219  MQT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
            +            L  M+  G +PD FT+   ID  CK   V EA  + E MR KG    
Sbjct: 1165 LSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGK--- 1221

Query: 269  SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
             P   TY  ++  L    ++E+   L   + + G   +V +Y  ++ G C   K++EA++
Sbjct: 1222 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 1281

Query: 329  FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            F EEM  KG  P  VTYN  +  LC +     A +L+  M   G +  + TY +L+    
Sbjct: 1282 FFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLC 1341

Query: 389  ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            + G  + A + +  + K     +++ + +++DG+    K+EEA    +E+   GL+
Sbjct: 1342 KNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLE 1397



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 16/280 (5%)

Query: 175  PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------------GMQT 221
            P+     +L+D LCK G V  A+ I + +++K K P+  TYN L              + 
Sbjct: 1188 PDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKL 1247

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             E +   G   + F+YN  I+ +CK + + EA   FE MR KG     P+  TY  +I A
Sbjct: 1248 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL---KPSTVTYNTLIGA 1304

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            L Q+ R+     L   M   G    +STY  +L+G+C  G +EEA    + +    + P+
Sbjct: 1305 LCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPN 1364

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            I  ++  L  +C     +EA + +  + + G  P    YN+LI+     G    A +   
Sbjct: 1365 IEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLW 1424

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +M+++GC  D  T+ V+I  L   +++ EA  LLEE+ N+
Sbjct: 1425 QMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNR 1464



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 131/290 (45%), Gaps = 21/290 (7%)

Query: 171  VKTQPEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYNIL------------ 217
            V  QP++  LN+L+   C    +          +K   +P+A T   L            
Sbjct: 975  VGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPD 1034

Query: 218  GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT--KGSTISSPTAKTY 275
             +Q  +EM + G   D  TY   I+  CKAR    A  L E M+   KG         TY
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVF------TY 1088

Query: 276  AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++I AL ++    E   +   MI +G LPDV  Y  +++G+C  G+++EA +F +EM  
Sbjct: 1089 GMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEG 1148

Query: 336  KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            +G   D+ TYN  +  L       E       M++ G  P   T+ +LI    + G+   
Sbjct: 1149 RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGE 1208

Query: 396  AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            A +    M  +G   D+ TY  +++GL    ++E+A  L E + ++G+KL
Sbjct: 1209 AQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL 1258



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 8/249 (3%)

Query: 228  MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            +G  PD +T N  I   C  R V     +F     +G     P A T   ++  +   + 
Sbjct: 975  VGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGF---EPDAVTVTTLVKGVWMENG 1031

Query: 288  MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM-GN-KGYPPDIVTY 345
            + +   L   M   G L D  TY  ++ G+C A K   A K  E+M GN KG   D+ TY
Sbjct: 1032 IPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVFTY 1088

Query: 346  NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
               +  LC +    EAL ++  MI  G  P V  Y+ L+      G    A E + EM+ 
Sbjct: 1089 GMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEG 1148

Query: 406  RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            RG + DV TY  +I GL      +E  + L  +V++G       F   +  L   G +G 
Sbjct: 1149 RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGE 1208

Query: 466  IHKLSDHMR 474
              ++ + MR
Sbjct: 1209 AQQILELMR 1217



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 2/153 (1%)

Query: 287  RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            ++ +   L    + S  +P   T+  +L  +   G     +    ++ + G  PD+ T N
Sbjct: 926  KLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLN 985

Query: 347  CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-SMYFELGEPDGAFETWHEMDK 405
              +   C  +       ++G  ++ G  P   T   L+  ++ E G PD A + + EM K
Sbjct: 986  ILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPD-AVQLFDEMTK 1044

Query: 406  RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +G   D  TY ++I+GL    K   A  L E++
Sbjct: 1045 KGLLGDAKTYGILINGLCKARKTGLAIKLHEKM 1077


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 149/319 (46%), Gaps = 17/319 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-----GMQTLEEMIQM--GHAPDN 234
           L+  LCK G ++ AE +   +    +KP+  TYN L      +Q +E+  ++      +N
Sbjct: 378 LIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKEN 437

Query: 235 FTYNT-----AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            T N       ++  C    +T A +LF+ M + G     P    Y  ++  LV+  R E
Sbjct: 438 LTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGL---KPNIVIYTTIVKGLVKEGRFE 494

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   +LG M + G  PDV  Y  V+ G C AGK+EE   +L EM  KG  P++ TY  F+
Sbjct: 495 EAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFI 554

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C       A R +  M++ G  P+      LI  Y + G    AF  +  M  +G  
Sbjct: 555 HGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVL 614

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            DV T+ V+I GL    K++EA  +  E+++KGL      + S +  L   GDL A  +L
Sbjct: 615 PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFEL 674

Query: 470 SDHM-RKFYNPVIARRLAL 487
            D M +K  NP I    AL
Sbjct: 675 HDDMCKKGINPNIVTYNAL 693



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYN--ILG------MQTLE- 223
            P++   N ++   CK G ++  ++ + + +   +KPN  TY   I G      MQ  E 
Sbjct: 509 SPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAER 568

Query: 224 ---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+  G AP++      ID +CK    T+A   F  M  +G     P  +T++++I 
Sbjct: 569 SFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVL---PDVQTHSVLIH 625

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +N +++E   +   +++ G +PDV TY  ++  +C  G ++ A++  ++M  KG  P
Sbjct: 626 GLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINP 685

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +IVTYN  +  LC      +A  L+  + E G   +  TY+ +I+ Y +      AF+ +
Sbjct: 686 NIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLF 745

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           H M   G   D   YC +IDG       E+A  L   +V +G+
Sbjct: 746 HGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI 788



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 23/327 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL--G 218
           ++E +     P++     L+  LCK G +  A    + +CK+    + PN  TYN L  G
Sbjct: 640 FSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKK---GINPNIVTYNALING 696

Query: 219 MQTLEEMIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           +  L E+ +           G A ++ TY+T I  +CK+  +TEA  LF  M+  G    
Sbjct: 697 LCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGV--- 753

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P +  Y  +I    +    E+  SL   M+  G +     +  +++G    GK+ EAY+
Sbjct: 754 PPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQ 812

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            +E+M +    P+ VTY   ++  C   N  EA +L+  M +    P+V TY  L+  Y 
Sbjct: 813 LVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYN 872

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
            +G     F  + EM  RG   D   + VM+D         +A  L+++++++G+ +   
Sbjct: 873 RIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN 932

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +   +  L    +L  + K+ D + K
Sbjct: 933 LYTILIDALCKHNNLSEVLKVLDEVEK 959



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 198/493 (40%), Gaps = 71/493 (14%)

Query: 2   TLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDN 61
           T+ H       +   L+  +RT S++S      +      ++S ++V ++  L +     
Sbjct: 3   TITHFFKNQNGKSRTLISTLRTHSIKSNSFSTNADT----NQSDNTVKEITSLLKQ---- 54

Query: 62  SNAYDNMEKALDSLGVP--LTTDSVVGVLQRFQ-FEEKIAFRFFMWAGHQDNYAHEPLAY 118
                N +  ++S  +P  L  D V  V+++ Q  + K    FF W   +  ++     +
Sbjct: 55  ----KNWQFLIESSPLPNKLNPDVVFLVIKQNQVIDPKRLHGFFNWVNSRTVFSQNLSTF 110

Query: 119 NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEIN 178
           +++  IL ++        ++  M+D   RN  V     +L  I+K Y E     +   + 
Sbjct: 111 SILSLILCNSGLFGNAANVLERMID--TRNPHV----KILDSIIKCYKEINGSSSSSSVV 164

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK------VKPNANTYNILGMQTLEEMIQM---- 228
              +L+D   K G ++ A ++    K           N+ + ++L    +E   ++    
Sbjct: 165 VFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGM 224

Query: 229 --GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
                PD +TY   I+ +C+   V E   +   M  KG     P   TY+++I  L +  
Sbjct: 225 LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCI---PNLVTYSVVIAGLCRAG 281

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY- 345
            ++E   L   M N G LPD   Y  +++G C   +  E    L+EM   G  PD V Y 
Sbjct: 282 DVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYT 341

Query: 346 ---NCFLKV-------------------------------LCDNKNGDEALRLYGRMIEV 371
              N F+K                                LC   + ++A  L+  M  +
Sbjct: 342 ALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMM 401

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P +QTYN LI  Y+++   + A+E   E+ K     +      +++GL  C  +  A
Sbjct: 402 GIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRA 461

Query: 432 CFLLEEVVNKGLK 444
             L +E+++ GLK
Sbjct: 462 NELFQEMISWGLK 474



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 5/297 (1%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFT 236
           ++  ++L   LC  GL   A  + +R+ +   P+    + + ++  +E+     +     
Sbjct: 107 LSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKILDSI-IKCYKEINGSSSSSSVVV 165

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           +   ID + K   + EA  +F   +T    +      + +     L++ +R+E  + +  
Sbjct: 166 FEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLS---KDLLKGNRVELFWKVYK 222

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+ +  +PDV TY  ++   C  GKVEE    L +M  KG  P++VTY+  +  LC   
Sbjct: 223 GMLGA-IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAG 281

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           + DEAL L   M   G  P    Y  LI  +              EM   G   D   Y 
Sbjct: 282 DVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYT 341

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            +I+G    S +  A  + EE+  + +KL    + + +  L  IGDL     L   M
Sbjct: 342 ALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM 398



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           K    P I   N L++ LCK G +  A  +   +  K +  N+ TY+ +           
Sbjct: 680 KKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLT 739

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-------- 268
              Q    M  +G  PD+F Y   ID  CKA    +A  LF  M  +G   +        
Sbjct: 740 EAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALID 799

Query: 269 -----------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
                                  +P   TY I+I        ++E   L   M     +P
Sbjct: 800 GFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMP 859

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V TY  +L G    G+  E +   +EM  +G  PD + ++  +       N  +AL+L 
Sbjct: 860 NVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLV 919

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M+  G       Y +LI    +        +   E++K+G    + T   ++      
Sbjct: 920 DDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRA 979

Query: 426 SKVEEACFLLEEVVNKGLKL 445
            + +EA  +LE +V   L L
Sbjct: 980 GRTDEALRVLESMVRSFLNL 999



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+ TY   +   C     +E   +   M E GC P++ TY+++I+     G+ D A E 
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
              M  +G   D   Y  +IDG     +  E   +L+E+   GLK  +  + + +     
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVK 349

Query: 460 IGDLGAIHKLSDHMRKFYNPVIARRLALN 488
             D+G   ++ + M        AR++ LN
Sbjct: 350 QSDIGGAFQVKEEM-------FARKIKLN 371


>gi|297720523|ref|NP_001172623.1| Os01g0816000 [Oryza sativa Japonica Group]
 gi|56785065|dbj|BAD82704.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572420|gb|EAZ13935.1| hypothetical protein OsJ_03862 [Oryza sativa Japonica Group]
 gi|255673815|dbj|BAH91353.1| Os01g0816000 [Oryza sativa Japonica Group]
          Length = 530

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 194/442 (43%), Gaps = 44/442 (9%)

Query: 50  DVAKLYEAIIDNSNAYD----NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA 105
           DVA+  EA++  +  +          L+  G   +   VV VL R +     A   F WA
Sbjct: 78  DVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLDRLRNSCAAAHAAFRWA 137

Query: 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165
             Q  YA    A + M+ IL+    K ++F    ++LD M+R++ +  P  V+L+I ++Y
Sbjct: 138 SAQPGYAPGRHACHSMLAILA----KHRRFDDARALLDQMRRSS-LASPAAVMLLI-RRY 191

Query: 166 TEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN 212
                V               +P +   + LL ALC+   V  AE +    + +      
Sbjct: 192 CAARDVAGAVAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETK 251

Query: 213 TYNIL------GMQTLEEMIQMGHA-------PDNFTYNTAIDTFCKARMVTEAADLFEF 259
           ++N++       ++++ E  +  +A        D  +Y + I  F KA  +     LF  
Sbjct: 252 SFNVVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNR 311

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M+  G     P  K Y  ++ AL +   + E  +L+  M   G  PD +T+  ++  +C 
Sbjct: 312 MKEAGVI---PDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCK 368

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           A +V+EA K L++M  +G  P + T++  L V    ++  E   L  +M E+ C P + T
Sbjct: 369 ARQVQEARKMLDDMLGRGLSPSVRTFHALLDVA---RSPIEVFDLLDKMKELQCDPEMDT 425

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           + MLI  +    + D   + W  M   G + D   Y V+I GLF   ++EE+    EE+ 
Sbjct: 426 FIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMK 485

Query: 440 NKGLKLPYRKFDSYLMQLSVIG 461
            KG   P  K    ++Q  + G
Sbjct: 486 AKG--FPPEKKTEEMIQAWLSG 505



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 6/248 (2%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q G+AP     ++ +    K R   +A  L + MR   S+++SP A    ++I       
Sbjct: 140 QPGYAPGRHACHSMLAILAKHRRFDDARALLDQMRR--SSLASPAA--VMLLIRRYCAAR 195

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            +    +    + N G  P V+ +  +L  +C    V++A   L     K +P +  ++N
Sbjct: 196 DVAGAVAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLS-SEKEFPFETKSFN 254

Query: 347 CFLKVLCDN-KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
             L   C+  ++  EA R +  M   G    V +Y  +IS + + G  D   + ++ M +
Sbjct: 255 VVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKE 314

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G   D   Y  ++  L     V EA  L+  +  KG+      F+S +  L     +  
Sbjct: 315 AGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQE 374

Query: 466 IHKLSDHM 473
             K+ D M
Sbjct: 375 ARKMLDDM 382


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 15/267 (5%)

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           +K  VK N NT+NIL             +  + +M      PDN +YNT +D  CK   +
Sbjct: 204 IKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKL 263

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            EA DL   M+  G     P   T+ I++    +   ++E   ++  M  +  LPDV TY
Sbjct: 264 NEARDLLLDMKNNGLL---PNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTY 320

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G+C  GK++EA++  +EM N    PD+VTYN  +    D  +  +   L  +M  
Sbjct: 321 NMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEG 380

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+  TYN+++  Y + G+ D A     +M++ G + D  T+  +I+G     ++ E
Sbjct: 381 KGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSE 440

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           A  +++E+  KGLK+     ++ L  L
Sbjct: 441 AFRMMDEMSRKGLKMNSVTLNTILHTL 467



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 132/282 (46%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P  N  N+L+   CK G L + A+ I    +N V P+  TYN+L              + 
Sbjct: 280 PNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRL 339

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM  +   PD  TYNT I+         +  +L + M  KG     P A TY +++  
Sbjct: 340 KDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGV---KPNAVTYNVVVKW 396

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            V+  +M+   + L  M  SG  PD  T+  ++ G C AG++ EA++ ++EM  KG   +
Sbjct: 397 YVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMN 456

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT N  L  LC  +  D+A +L     + G +    +Y  LI  YF+ G+   A + W 
Sbjct: 457 SVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWD 516

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM ++     + TY  MI GL    K +++   L E++  GL
Sbjct: 517 EMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGL 558



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 16/281 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-----ETICKRVK-NKVKPNANTYNILGMQTLEEMIQM 228
           P+    N L++  CK G +  A     E   K +K N V  N   + + G + L++  ++
Sbjct: 420 PDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKL 479

Query: 229 -------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                  G+  D  +Y T I  + K     EA  L++ M+ K      P+  TY  MI  
Sbjct: 480 LSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEII---PSIITYNTMIGG 536

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  + + ++    L  ++ SG +PD +TY  ++ G C  G+VE+A++F  +M  K + PD
Sbjct: 537 LCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPD 596

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + T N  L+ LC     D+AL+L+   I  G      TYN +IS   +    + AF+   
Sbjct: 597 LFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLA 656

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           EM+++    D  TY  ++  L D  +++EA   +  +V +G
Sbjct: 657 EMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQG 697



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 52/370 (14%)

Query: 171 VKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL----------- 217
           +K  P++   N L++    C   L  + E I K     VKPNA TYN++           
Sbjct: 346 LKLLPDVVTYNTLINGCFDCSSSLKGF-ELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMD 404

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT-- 274
                L +M + G +PD  T+NT I+ +CKA  ++EA  + + M  KG  ++S T  T  
Sbjct: 405 NAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTIL 464

Query: 275 ------------------------------YAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                         Y  +I+   ++ +  E   L   M     +
Sbjct: 465 HTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEII 524

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P + TY  ++ G+C +GK +++   L E+   G  PD  TYN  +   C     ++A + 
Sbjct: 525 PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQF 584

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           + +M++    P + T N+L+      G  D A + ++    +G A D  TY  +I GL  
Sbjct: 585 HNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCK 644

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF--YNPVIA 482
             + EEA  LL E+  K L      +++    LS + D G + +  + M +      +  
Sbjct: 645 EDRFEEAFDLLAEMEEKKLGPDCYTYNAI---LSALADAGRMKEAEEFMSRIVEQGKLQD 701

Query: 483 RRLALNQKRV 492
           + ++LN++++
Sbjct: 702 QTISLNKRKI 711



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 23/320 (7%)

Query: 176 EINALNLLLD----ALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------- 217
           ++ +L ++LD    A   C    +A  I  R+K   +KPN  T N L             
Sbjct: 134 KVQSLRVILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSV 193

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                   ++I++G   +  T+N  I   C    ++EA  L   M+        P   +Y
Sbjct: 194 YLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCF---PDNVSY 250

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++  L +  ++ E   LL  M N+G LP+ +T+  ++ G C  G ++EA + ++ M  
Sbjct: 251 NTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQ 310

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               PD+ TYN  +  LC +   DEA RL   M  +   P V TYN LI+  F+      
Sbjct: 311 NNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLK 370

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
            FE   +M+ +G   +  TY V++       K++ A   L ++   G       F++ + 
Sbjct: 371 GFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLIN 430

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
                G L    ++ D M +
Sbjct: 431 GYCKAGRLSEAFRMMDEMSR 450



 Score = 38.9 bits (89), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 33/186 (17%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------ 217
           + + +K   +P++   N+LL  LC  G++D A  +     +K K  +A TYN +      
Sbjct: 585 HNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCK 644

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG----STI 267
                     L EM +    PD +TYN  +     A  + EA +    +  +G     TI
Sbjct: 645 EDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTI 704

Query: 268 S----------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           S                 P + T++  I  L    + ++   ++      G     STY 
Sbjct: 705 SLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYI 764

Query: 312 EVLEGM 317
            ++EG+
Sbjct: 765 SLMEGL 770


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 133/275 (48%), Gaps = 16/275 (5%)

Query: 181 NLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+   C  G  D  A+ +   +K K+ PN  T+++L              +  +EMI 
Sbjct: 302 NILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 361

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G APD  TY + ID FCK   + +A  + + M +KG     P  +T+ I+I    + +R
Sbjct: 362 RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC---DPNIRTFNILINGYCKANR 418

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +++   L   M   G + D  TY  +++G C  GK+  A +  +EM ++  PP+IVTY  
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L  LCDN   ++AL ++ ++ +      +  YN++I       + D A++ +  +  +G
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               V TY +MI GL     + EA  L  ++   G
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 181/377 (48%), Gaps = 30/377 (7%)

Query: 112 AHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-FVPV---------DVLL 159
            H+P  +  N +++ L  +  +A+   L+  M++Y  + N V + PV           L 
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M L +  E+  +K        ++++D LCK G +D A  +   ++ K +  N  TYNIL 
Sbjct: 248 MELLRKMEERNIKLDAV--KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI 305

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      G + L +MI+    P+  T++  ID+F K   + EA +L + M  +G  
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI- 364

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             +P   TY  +I    + + +++   ++  M++ GC P++ T+  ++ G C A ++++ 
Sbjct: 365 --APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   +M  +G   D VTYN  ++  C+    + A  L+  M+     P++ TY +L+  
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             + GE + A E + +++K     D+  Y ++I G+ + SKV++A  L   +  KG+K  
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542

Query: 447 YRKFDSYLMQLSVIGDL 463
            + ++  +  L   G L
Sbjct: 543 VKTYNIMIGGLCKKGPL 559



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 120/273 (43%), Gaps = 16/273 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E I     P+      L+D  CK   +D A  +   + +K   PN  T+NIL      
Sbjct: 356 HKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 415

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G++   +M   G   D  TYNT I  FC+   +  A +LF+ M ++      P 
Sbjct: 416 ANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV---PPN 472

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY I++  L  N   E+   +   +  S    D+  Y  ++ GMC A KV++A+    
Sbjct: 473 IVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 532

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            +  KG  P + TYN  +  LC      EA  L+ +M E G  P   TYN+LI  +   G
Sbjct: 533 SLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDG 592

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +   + +   E+ + G + D  T  ++ID L D
Sbjct: 593 DATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 625



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 91/170 (53%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T +IMI    +  ++   FS +G +I  G  P+  T+  ++ G+CL G+V EA + ++ M
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G+ PD++T N  +  LC +    EA+ L  +M+E GC P+  TY  ++++  + G+ 
Sbjct: 185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             A E   +M++R    D   Y ++IDGL     ++ A  L  E+  KG+
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 294



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 10/240 (4%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G A + +T +  I+ FC+ R +  A   F  M         P   T++ +I  L
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLA---FSAMGKIIKLGYEPNTITFSTLINGL 168

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               R+ E   L+  M+  G  PD+ T   ++ G+CL+GK  EA   +++M   G  P+ 
Sbjct: 169 CLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 228

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   L V+C +     A+ L  +M E         Y+++I    + G  D AF  ++E
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 288

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   ++ TY ++I G  +  + ++   LL +++        RK +  ++  SV+ D
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-------RKINPNVVTFSVLID 341



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+   C+ G ++ A+ + +  V  KV PN  TY IL             ++  E++ +
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
                D   YN  I   C A  V +A DLF  +  KG     P  KTY IMI  L +   
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV---KPGVKTYNIMIGGLCKKGP 558

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   L   M   G  PD  TY  ++      G   ++ K +EE+   G+  D  T   
Sbjct: 559 LSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKM 618

Query: 348 FLKVLCDNK 356
            + +L D +
Sbjct: 619 VIDMLSDGR 627



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 95/222 (42%)

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A D  +  R    +   PT   ++ +  A+ +  + +   +L   M   G   ++ T  
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++   C   K+  A+  + ++   GY P+ +T++  +  LC      EAL L  RM+E+
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P + T N L++     G+   A     +M + GC  +  TY  +++ +    +   A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             LL ++  + +KL   K+   +  L   G L     L + M
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 15/256 (5%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMI 226
            N+++DA  K G++D    I  +++ + V P+A TY I+             M    +MI
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMI 464

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
            MG  P+   Y++ I  FC    + +A +L   M ++G  I  P    +  +I +L +  
Sbjct: 465 AMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRG--IPRPNIVFFNSIINSLCKEG 522

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+ E   +   +I+ G  PDV T+  +++G  L GK+E+A+  L+ M + G  PD+V+YN
Sbjct: 523 RVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYN 582

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C N   D+ L L+G M+  G  P+  TY +++   F  G   GA +  HEM + 
Sbjct: 583 TLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIES 642

Query: 407 GCAQDVDTYCVMIDGL 422
           G   D+ T  +++ GL
Sbjct: 643 GTTMDISTCGIILGGL 658



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 165/401 (41%), Gaps = 44/401 (10%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV------------DVLLMILKQY 165
           YN+++D    T+     F L    L    + + +   +            DV+ ++L + 
Sbjct: 122 YNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRM 181

Query: 166 TEKIKVKTQPEINALNLLLDALCKCG----LVDYAETICKRVKNKVKPNANTYN--ILGM 219
            E   +  +P+  + N ++  LC+       +D   T+ K+      PN  TYN  I G+
Sbjct: 182 PE---LGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKK-SGGCSPNVVTYNTVIHGL 237

Query: 220 ----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                         EM+Q G  PD  TY + ID  CKAR + +A  +   M + G     
Sbjct: 238 FREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGF---Q 294

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  MI     + + +E   +   M + G +P++ T    +  +C  GK +EA +F
Sbjct: 295 PNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEF 354

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            + M  KG+ P++VTY+  L          + L L+  M   G     + +N++I  Y +
Sbjct: 355 FDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGK 414

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G  D     + +M ++G   D  TY ++I       ++ +A     +++  GLK     
Sbjct: 415 RGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIV 474

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRK---------FYNPVI 481
           + S +    + G+L    +L   M           F+N +I
Sbjct: 475 YHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSII 515



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 151/347 (43%), Gaps = 24/347 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKV-KPNANTYNILGM 219
           + ++ + I +  +PE    + L+   C  G LV   E + + +   + +PN   +N +  
Sbjct: 457 MDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIIN 516

Query: 220 QTLEE------------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
              +E            +I +G  PD  T+N+ ID +     + +A  + + M + G   
Sbjct: 517 SLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGI-- 574

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   +Y  +I    +N R+++   L G M++ G  P   TY  +L G+   G+   A 
Sbjct: 575 -EPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAK 633

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           K   EM   G   DI T    L  LC N   DEA+ ++ ++  +    ++   N +I   
Sbjct: 634 KMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAM 693

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           +++ + + A E +  +   G   +  TY VMI  L     VEEA  +   +   G   P 
Sbjct: 694 YKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCA-PS 752

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRI 494
            +  +Y+++  V+ + G I K  ++M K    V  +R++L    V +
Sbjct: 753 SRLLNYIIR--VLLEKGEIVKAGNYMFK----VDGKRISLEASTVSL 793



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 3/181 (1%)

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           ++ PT  TY I++    +  R    F+L G  + +G   DV     +L+ +  A + ++ 
Sbjct: 114 VALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDV 173

Query: 327 YK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE--VGCWPSVQTYNML 383
               L  M   G  PD ++YN  +K LC++     AL L   M++   GC P+V TYN +
Sbjct: 174 VNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTV 233

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I   F  GE   A   +HEM ++G   DV TY  +ID L     +++A  +L ++++ G 
Sbjct: 234 IHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGF 293

Query: 444 K 444
           +
Sbjct: 294 Q 294



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 118/294 (40%), Gaps = 51/294 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P I   N ++++LCK G V  A  I   V +   +P+  T+N L               
Sbjct: 505 RPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFG 564

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+ MI  G  PD  +YNT ID +C+   + +   LF  M +KG     PT  TY I++ 
Sbjct: 565 VLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGV---KPTTITYGIILH 621

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG------------------- 321
            L  + R      +   MI SG   D+ST   +L G+C                      
Sbjct: 622 GLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKF 681

Query: 322 ----------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                           K EEA +  + +   G  P+  TY   +K L    + +EA  ++
Sbjct: 682 NIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMF 741

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
             M + GC PS +  N +I +  E GE   A     ++D +  + +  T  +++
Sbjct: 742 SLMEKSGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLM 795



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 101/248 (40%), Gaps = 35/248 (14%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLF-EFMRT--KGSTISS------------------- 269
           P   TYN  +D  C+ R  T    LF  F++T  K   I +                   
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176

Query: 270 -----------PTAKTYAIMIVALVQNDRMEECFSLLGHMI--NSGCLPDVSTYKEVLEG 316
                      P   +Y  ++  L ++ R +    LL  M+  + GC P+V TY  V+ G
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +   G+V +A     EM  +G  PD+VTY   +  LC  +  D+A  +  +MI  G  P+
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TYN +I  Y   G+       + EM  +G   ++ T    +  L    K +EA    +
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 437 EVVNKGLK 444
            +  KG K
Sbjct: 357 SMAAKGHK 364


>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
          Length = 838

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 163/378 (43%), Gaps = 59/378 (15%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175
           L YN+++D L +       ++L+ SM+    R ++     D + + +   TE +K    P
Sbjct: 384 LLYNVILDGLINHGEVEAAYQLLSSMV----RGDQRVSDDDTVGVHIFVITEDVK----P 435

Query: 176 EINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTL 222
             ++ N+++  LCK   +D A  + K  V    K     +N L              +  
Sbjct: 436 NSDSFNIVVCGLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSGKLDEAYEIF 495

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            +M  +G  P  FTYN+ +   C+ +  + AADL   MR   +    P  K    M+  L
Sbjct: 496 NQMKDLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMR---ANAHKPWIKNCTDMVQQL 552

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----------------------- 319
             + R+ E    L  M+  G LPD+ TY   + GMC                        
Sbjct: 553 CLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPDV 612

Query: 320 ------------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
                       AGK +EA + +EEM +KG  P +VTYN  + + C + + D+A+    +
Sbjct: 613 VAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYK 672

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           MI+    P+V TY  L+      G PD A   W +M ++GC+ +   Y  +++GL  C +
Sbjct: 673 MIDEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGR 732

Query: 428 VEEACFLLEEVVNKGLKL 445
           +E A    EE+  KG  L
Sbjct: 733 METAVNYYEEMKTKGFDL 750



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 3/224 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +Q L+ M+++G  PD  TY+ A++  CK   +  A  LF  + +K      P    + I
Sbjct: 561 ALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISSK---CYLPDVVAHNI 617

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I    +  + +E   ++  M++ G LP V TY  +++  C +G +++A   + +M ++ 
Sbjct: 618 LINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYKMIDEE 677

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
            PP +VTY   L  LC+    DEA+ L+ +M E GC P+   Y  L++   + G  + A 
Sbjct: 678 KPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRMETAV 737

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             + EM  +G   D+ +   + + L    +  + C LL+ V+ K
Sbjct: 738 NYYEEMKTKGFDLDIFSLLNLTNLLIAQGQASKGCELLKVVLQK 781



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 148/382 (38%), Gaps = 57/382 (14%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
            P   +SV+  L  ++     A  FF WA  Q  + H   + N M  +L   + +A   R
Sbjct: 67  TPPAAESVILRLPSWRH----ALDFFRWAAEQPGFRHSCYSLNAMASLLPPHQ-RAHLDR 121

Query: 137 LVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
           L                            T+ +  +      AL  LL  L   GL D A
Sbjct: 122 LA---------------------------TDALVSRCSMTPGALGFLLRRLGAAGLPDTA 154

Query: 197 ETICKRVKNKVK--PNANTYNIL------------GMQTLEEMIQM--GHAPDNFTYNTA 240
             +    K  +   PN+ TYN L                L+EM+      + D +T  + 
Sbjct: 155 ARVFDAAKTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVVTCGDESVDRYTLTSL 214

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +  +C A    +A+ + + M  +             ++IVA  +  ++E+   LLG M  
Sbjct: 215 LQCYCNAGRPEDASAVLQRMSKRAWV----DEHVLTMLIVAYSKWGKVEDAVELLGRMEA 270

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
               P+  T   ++ G+   G+V+ A     +M + G+  D+  Y+  ++ LC      +
Sbjct: 271 LDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVDLAMYSVLIEGLCHGNEMGK 330

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD--GAFETWHEMD-KRGCAQDVDTYCV 417
           A++L+  M      P V+    +I  +   G+    G F   + +  K G A  V  Y V
Sbjct: 331 AVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFINENAVHLKPGSA--VLLYNV 388

Query: 418 MIDGLFDCSKVEEACFLLEEVV 439
           ++DGL +  +VE A  LL  +V
Sbjct: 389 ILDGLINHGEVEAAYQLLSSMV 410



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/392 (19%), Positives = 149/392 (38%), Gaps = 67/392 (17%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           +++  +   + + L +L+ A  K G V+ A  +  R++   ++PN  T ++L        
Sbjct: 232 QRMSKRAWVDEHVLTMLIVAYSKWGKVEDAVELLGRMEALDMRPNEKTLSVLVHGLARQG 291

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR------------ 261
                M    +M   G + D   Y+  I+  C    + +A  LFE M+            
Sbjct: 292 RVDVAMNMFGKMASYGFSVDLAMYSVLIEGLCHGNEMGKAVKLFEDMKRDRITPDVRLLK 351

Query: 262 -------------TKGSTISS------PTAKT--YAIMIVALVQNDRMEECFSLLGHM-- 298
                        T G  I+       P +    Y +++  L+ +  +E  + LL  M  
Sbjct: 352 KIIEAFCRQGDFSTVGPFINENAVHLKPGSAVLLYNVILDGLINHGEVEAAYQLLSSMVR 411

Query: 299 -----------------INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                            I     P+  ++  V+ G+C   K++ A    ++M   G    
Sbjct: 412 GDQRVSDDDTVGVHIFVITEDVKPNSDSFNIVVCGLCKVKKLDLALALTKDMVGLGCKGK 471

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++ +N  +  LC++   DEA  ++ +M ++G  PS  TYN L+       +   A +   
Sbjct: 472 LLMFNDLILELCNSGKLDEAYEIFNQMKDLGLKPSEFTYNSLLYGICRRKDTSAAADLLR 531

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM        +     M+  L    ++ EA   L+ ++  G       + + +  +  +G
Sbjct: 532 EMRANAHKPWIKNCTDMVQQLCLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVG 591

Query: 462 DL-GAIHKLSDHMRKFYNP-VIARRLALNQKR 491
           D+  A+    D   K Y P V+A  + +N  R
Sbjct: 592 DIENALGLFLDISSKCYLPDVVAHNILINGFR 623


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 187/462 (40%), Gaps = 86/462 (18%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSST-KYKA---------------KQFRLVCSM 141
           +   F W G Q  Y H    Y ++I  L S  ++K                K+   +  M
Sbjct: 88  SMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIM 147

Query: 142 LDYMK--------------RN----NKVFVPVDVLLMILKQ----------YTEKIKVKT 173
            DY K              RN       F   +V+L IL            + + +  K 
Sbjct: 148 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 207

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
            P +    +++ ALC    VD A ++ + + K+   PN+  Y  L             +Q
Sbjct: 208 PPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 267

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST-------------- 266
            LEEM  MG  PD  T+N  I   CK   + EAA +   M  +G T              
Sbjct: 268 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLC 327

Query: 267 --------------ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYK 311
                         I  PT+  +  +I   V + R+++  ++L  M+ S G +PDV TY 
Sbjct: 328 KIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 387

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++ G    G V  A + L +M NKG  P++ +Y   +   C     DEA  L   M   
Sbjct: 388 SLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSAD 447

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P+   +N LIS + +      A E + EM ++GC  DV T+  +I GL +  +++ A
Sbjct: 448 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 507

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            +LL +++++G+      +++ +      G++    KL + M
Sbjct: 508 LWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM 549



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 24/320 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P + +  +L+D  CK G +D A  +   +  + +KPN   +N L             ++
Sbjct: 415 KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 474

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM + G  PD +T+N+ I   C+   +  A  L   M ++G   ++ T   Y  +I 
Sbjct: 475 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT---YNTLIN 531

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A ++   ++E   L+  M+  G L D  TY  +++G+C AG+V++A    E+M   G  P
Sbjct: 532 AFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVP 591

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             ++ N  +  LC +   +EA+     M+  G  P + T+N LI+     G  +     +
Sbjct: 592 SSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 651

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            ++   G   D  TY  ++  L     V +AC LL+E +  G  +P  +  S L+Q    
Sbjct: 652 RKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGF-VPNDRTWSILLQ---- 706

Query: 461 GDLGAIHKLSDHMRKFYNPV 480
                + + +   R FYN V
Sbjct: 707 ---SLVPQETLDRRTFYNAV 723



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 129/274 (47%), Gaps = 19/274 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQT----------LEEMI-QMG 229
           L++ LCK G VD A+ +  R+    KP +  +N L  G  T          L +M+   G
Sbjct: 322 LMNGLCKIGRVDAAKDLFYRIP---KPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYG 378

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  TYN+ I  + K  +V  A ++   MR KG     P   +Y I++    +  +++
Sbjct: 379 IVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGC---KPNVYSYTILVDGFCKLGKID 435

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E ++LL  M   G  P+   +  ++   C   ++ EA +   EM  KG  PD+ T+N  +
Sbjct: 436 EAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 495

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC+      AL L   MI  G   +  TYN LI+ +   GE   A +  +EM  +G  
Sbjct: 496 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSL 555

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            D  TY  +I GL    +V++A  L E+++  GL
Sbjct: 556 LDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGL 589


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 138/300 (46%), Gaps = 19/300 (6%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPN 210
           F  VD+ L     Y E  + +  P     NL+L ALCK G ++ A  + + +++  + PN
Sbjct: 177 FHRVDIALTF---YREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPN 233

Query: 211 ANTYNIL-------GMQTLEE-----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             +YN L       G+ ++       M + G  P+  T+N+ I  FCK   + EA   F 
Sbjct: 234 VVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFS 293

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M+    T   P   TY  +I    Q         +   M+ +G   D+ TY  ++ G+C
Sbjct: 294 EMKVMNVT---PNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLC 350

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             GK ++A   ++E+  +   P+  TY+  +   C  KN D A +LY  M+  GC P+ Q
Sbjct: 351 KEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQ 410

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           T+ ML S + +  + +GAF    +M  R  A D +T   + DGL  C K   A  L  E+
Sbjct: 411 TFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEM 470



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP + T+ +++ AL ++ ++E+   +L  M + G  P+V +Y  ++ G C  G +  A K
Sbjct: 196 SPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATK 255

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               MG  G  P++VT+N  +   C      EA R +  M  +   P+  TYN LI+ Y 
Sbjct: 256 LKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYG 315

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++G  + A + + EM + G   D+ TY  +I GL    K ++A FL++E+  + L
Sbjct: 316 QVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENL 370



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 3/220 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EM +   +P+++T+N  +   CK+  + +A ++   M + G T   P   +Y  +I   
Sbjct: 188 REMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGIT---PNVVSYNTLIAGH 244

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
                +     L   M  +G  P+V T+  ++ G C  GK+ EA +F  EM      P+ 
Sbjct: 245 CNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNT 304

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  +       N + A ++Y  M+  G    + TYN LI    + G+   A     E
Sbjct: 305 VTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKE 364

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +DK     +  TY  +I G       + A  L + +V  G
Sbjct: 365 LDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSG 404



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 76/216 (35%), Gaps = 51/216 (23%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P +   N L+   CK G +  A      +K   V PN  TYN L              +
Sbjct: 266 EPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGK 325

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM++ G   D  TYN  I   CK     +AA L + +  +      P A TY+ +I 
Sbjct: 326 VYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLV---PNASTYSALIS 382

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYK----------------------------- 311
                   +  F L   M+ SGC P+  T+K                             
Sbjct: 383 GQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMAS 442

Query: 312 ------EVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                 E+ +G+C  GK   A K   EM  +   P+
Sbjct: 443 DSNTLLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K   A      M + G+ P + + N +L  L D    D AL  Y  M      P+  T+N
Sbjct: 144 KFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFN 203

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           +++S   + G+ + A E   EM+  G   +V +Y  +I G   C+K
Sbjct: 204 LVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAG--HCNK 247


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 148/290 (51%), Gaps = 16/290 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++++D LCK G +D A  +   ++ K  K +  TYN L            G + L +MI+
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
              +P+  T++  ID+F K   + EA  L + M  +G    +P   TY  +I    + +R
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI---APNTITYNSLIDGFCKENR 383

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   ++  MI+ GC PD+ T+  ++ G C A ++++  +   EM  +G   + VTYN 
Sbjct: 384 LEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNT 443

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            ++  C +   + A +L+  M+     P + +Y +L+    + GE + A E + +++K  
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
              D+  Y ++I G+ + SKV++A  L   +  KG+KL  R ++  + +L
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL 553



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 137/282 (48%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           + +I   N L+   C  G   D A+ +   +K K+ PN  T+++L              Q
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM+Q G AP+  TYN+ ID FCK   + EA  + + M +KG     P   T+ I+I 
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC---DPDIMTFNILIN 411

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              + +R+++   L   M   G + +  TY  +++G C +GK+E A K  +EM ++   P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DIV+Y   L  LCDN   ++AL ++G++ +      +  Y ++I       + D A++ +
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +  +G   D   Y +MI  L     + +A  L  ++  +G
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 29/328 (8%)

Query: 134 QFRLVCSMLDYMKRNNKVFVPV------DVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
           Q R + +++D+    N++F  +      +++L + KQ   K        I  L+++++  
Sbjct: 81  QSRPLPTVIDF----NRLFSAIAKTKQYELVLALCKQMESK---GIAHSIYTLSIMINCF 133

Query: 188 CKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDN 234
           C+C  + YA  T+ K +K   +P+   +N L             ++ ++ M++MGH P  
Sbjct: 134 CRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTL 193

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T NT ++  C    V++A  L + M   G     P   TY  ++  + ++ +      L
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGF---QPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M       D   Y  +++G+C  G ++ A+    EM  KG+  DI+TYN  +   C+
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               D+  +L   MI+    P+V T+++LI  + + G+   A +   EM +RG A +  T
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           Y  +IDG    +++EEA  +++ +++KG
Sbjct: 371 YNSLIDGFCKENRLEEAIQMVDLMISKG 398



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 175/408 (42%), Gaps = 30/408 (7%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI------ 161
           +D     PL   +  + L S   K KQ+ LV ++   M+          + +MI      
Sbjct: 77  RDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRC 136

Query: 162 ------LKQYTEKIKVKTQPEINALNLLLDALC-KCGLVDYAETICKRVKNKVKPNANTY 214
                      + +K+  +P+    N LL+ LC +C + +  E + + V+   KP   T 
Sbjct: 137 RKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITL 196

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L             +  ++ M++ G  P+  TY   ++  CK+     A +L   M  
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           +   +    A  Y+I+I  L ++  ++  F+L   M   G   D+ TY  ++ G C AG+
Sbjct: 257 RNIKLD---AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            ++  K L +M  +   P++VT++  +          EA +L   M++ G  P+  TYN 
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI  + +    + A +    M  +GC  D+ T+ ++I+G    +++++   L  E+  +G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM--RKFYNPVIARRLALN 488
           +      +++ +      G L    KL   M  R+    +++ ++ L+
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLD 481



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + + I+ +  P +   N L  A+ K    +    +CK++++K +  +  T +I+      
Sbjct: 76  FRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCR 135

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                    T+ +++++G+ PD   +NT ++  C    V+EA +L + M   G     PT
Sbjct: 136 CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH---KPT 192

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T   ++  L  N ++ +   L+  M+ +G  P+  TY  VL  MC +G+   A + L 
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  +    D V Y+  +  LC + + D A  L+  M   G    + TYN LI  +   G
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAG 312

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             D   +   +M KR  + +V T+ V+ID      K+ EA  LL+E++ +G+
Sbjct: 313 RWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI 364



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 127/305 (41%), Gaps = 45/305 (14%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           K   + IK K  P +   ++L+D+  K G +  A+ + K +  + + PN  TYN L    
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +Q ++ MI  G  PD  T+N  I+ +CKA  + +  +LF  M  +G   ++
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 438

Query: 270 PTAKT--------------------------------YAIMIVALVQNDRMEECFSLLGH 297
            T  T                                Y I++  L  N  +E+   + G 
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 498

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           +  S    D+  Y  ++ GMC A KV++A+     +  KG   D   YN  +  LC   +
Sbjct: 499 IEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDS 558

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             +A  L+ +M E G  P   TYN+LI  +    +   A E   EM   G   DV T  +
Sbjct: 559 LSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKM 618

Query: 418 MIDGL 422
           +I+ L
Sbjct: 619 VINML 623



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 38/246 (15%)

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           N +Y   + +        +A DLF   R    +   PT   +  +  A+ +  + E   +
Sbjct: 53  NLSYRDKLSSGLVGIKADDAVDLF---RDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLA 109

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M + G    + T   ++   C   K+  A+  + ++   GY PD V +N  L  LC
Sbjct: 110 LCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC 169

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLI----------------------------- 384
                 EAL L  RM+E+G  P++ T N L+                             
Sbjct: 170 LECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEV 229

Query: 385 ------SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
                 ++  + G+   A E   +M++R    D   Y ++IDGL     ++ A  L  E+
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289

Query: 439 VNKGLK 444
             KG K
Sbjct: 290 EIKGFK 295


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 197/414 (47%), Gaps = 53/414 (12%)

Query: 65   YDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR----FFMWAGHQDNYAHEPLAYNL 120
            +  M+K L    V L T  + GV++  Q E+  AFR    FF   G   + +      ++
Sbjct: 672  FHQMKKLLRPDHVTLCT-LLPGVIKSGQIED--AFRITEDFFYQVGSNIDRS---FWEDV 725

Query: 121  MIDILS-STKYKAKQF--RLVCSMLDYMKRNNKVFVPV----------DVLLMILKQYTE 167
            M  IL+ +   KA  F  RLVC  +    +++ V +P+           V   +  ++T+
Sbjct: 726  MGGILTEAGTEKAILFGERLVCRAI---CKDDSVLIPIIKVLCKHKKTSVARNVFVKFTK 782

Query: 168  KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQ 227
            ++ VK  P +   NLL+D   +   V+ A                 +N+      EEM  
Sbjct: 783  ELGVK--PTLKVYNLLIDGFLEVHNVEVA-----------------WNLF-----EEMKS 818

Query: 228  MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             G APD FTYN+ ID   K+  + E  DL++ M T+G     P   TY ++I  LV+++R
Sbjct: 819  AGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGC---KPNTITYNMVISNLVKSNR 875

Query: 288  MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +++   L  ++++    P   T+  +++G+  +G++++A++  + M + G  P+   YN 
Sbjct: 876  LDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNI 935

Query: 348  FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
             +       + D A   + RM++ G  P +++Y +L+ +    G  D A   + ++ + G
Sbjct: 936  LVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAG 995

Query: 408  CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
               D+  Y +MI+GL    + EEA  L  E+ N+G+      ++S ++ L ++G
Sbjct: 996  LDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVG 1049



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 8/281 (2%)

Query: 195 YAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           Y  TIC RV  +       Y I+     + M   G  PD  TY   ID  C AR + +A 
Sbjct: 265 YTYTICIRVLGRDGKIDEAYRIM-----KRMDDDGCGPDVVTYTVLIDALCTARKLDDAM 319

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            LF  M+   S+   P   TY  ++        +++   +   M   G  PDV T+  ++
Sbjct: 320 CLFTKMK---SSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILV 376

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
             +C AG++ EA+  L+ M  +G  P++ TYN  +  L      D+AL L+  M  +G  
Sbjct: 377 NALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVE 436

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+  TY +LI  + + G P  A ET+ +M  RG A ++      +  L +  ++ EA  +
Sbjct: 437 PTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAM 496

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             E+ + GL      ++  +   S +G +    KL   M K
Sbjct: 497 FNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK 537



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             LE+M + G   + ++YN  I    ++    EA +++  M ++G     P+ KT++ ++
Sbjct: 180 SALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGL---KPSLKTFSALM 236

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
           VA  +   ++    LL  M + G  P++ TY   +  +   GK++EAY+ ++ M + G  
Sbjct: 237 VASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCG 296

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+VTY   +  LC  +  D+A+ L+ +M      P   TY  L+  + + G  D   + 
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           W EM+  G A DV T+ ++++ L    ++ EA  LL+ +  +G+ LP
Sbjct: 357 WTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGV-LP 402



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 142/318 (44%), Gaps = 55/318 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL--------GMQTLE-- 223
           P++    +L+DALC    +D A  +  ++K+   KP+  TY  L         +  +E  
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356

Query: 224 --EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G+APD  T+   ++  CKA  + EA DL + MR +G     P   TY  +I  
Sbjct: 357 WTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVL---PNLHTYNTLISG 413

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTY----------------KEVLEGM-------- 317
           L++ +R+++   L  +M + G  P   TY                 E  E M        
Sbjct: 414 LLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPN 473

Query: 318 ---CLA--------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG--DEALRL 364
              C A        G++ EA     E+ + G  PD VTYN  +K  C +K G  DEA++L
Sbjct: 474 IVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMK--CYSKVGQVDEAIKL 531

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              M +V C P V   N LI   ++ G  + A++ +  M++   A  V TY +++ GL  
Sbjct: 532 LSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGK 591

Query: 425 CSKVEEACFLLEEVVNKG 442
             ++++A  L E +   G
Sbjct: 592 EGQIQKAVQLFESMNGHG 609



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 30/371 (8%)

Query: 80  TTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVC 139
           ++D V+GVL     +   A  +F   G   N  H     N M++IL       ++   + 
Sbjct: 90  SSDEVLGVLHSIS-DPIHALFYFKSVGELPNVVHTTETCNHMLEILRV----HRRVEDMA 144

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP----EINALNLLLDALCKCGLVDY 195
            + D M+R   +   VD  L+I K    +  ++  P    ++     +L+A    GL+ +
Sbjct: 145 FVFDLMQRQ-IIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHF 203

Query: 196 --AETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
                 CK                 ++    M+  G  P   T++  +    K R +   
Sbjct: 204 LLQSGFCKE---------------ALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTV 248

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             L E M + G     P   TY I I  L ++ +++E + ++  M + GC PDV TY  +
Sbjct: 249 MGLLEEMESMGL---RPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVL 305

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           ++ +C A K+++A     +M +  + PD VTY   L    D  + D+  +++  M   G 
Sbjct: 306 IDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGY 365

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P V T+ +L++   + G  + AF+    M K+G   ++ TY  +I GL   +++++A  
Sbjct: 366 APDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALD 425

Query: 434 LLEEVVNKGLK 444
           L   + + G++
Sbjct: 426 LFSNMESLGVE 436



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 151/354 (42%), Gaps = 33/354 (9%)

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV------------FVPVD 156
           D YA + + + ++++ L     KA +      +LD M++   +             +  +
Sbjct: 363 DGYAPDVVTFTILVNALC----KAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRAN 418

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK------NKVKPN 210
            L   L  ++    +  +P      LL+D   K G    A    +++K      N V  N
Sbjct: 419 RLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACN 478

Query: 211 ANTYNILGMQTLEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           A+ Y++  M  L E   M       G APD+ TYN  +  + K   V EA  L   M   
Sbjct: 479 ASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEM--- 535

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
                 P       +I  L +  R+EE + +   M      P V TY  +L G+   G++
Sbjct: 536 SKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQI 595

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           ++A +  E M   G  P+ +T+N  L  LC N   D AL+++ +M  + C P V T+N +
Sbjct: 596 QKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTI 655

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
           I  + +  +   A   +H+M K+    D  T C ++ G+    ++E+A  + E+
Sbjct: 656 IHGFIKQNQIKNAIWLFHQM-KKLLRPDHVTLCTLLPGVIKSGQIEDAFRITED 708



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 124/293 (42%), Gaps = 24/293 (8%)

Query: 112  AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILK 163
            A +   YN +ID    +    + F L   ML    + N +         V  + L   + 
Sbjct: 822  APDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMD 881

Query: 164  QYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----- 217
             Y   +     P       L+D L K G +D A E     V    +PN+  YNIL     
Sbjct: 882  LYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYG 941

Query: 218  -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                     +  + M++ G  PD  +Y   +D  C A  V +A   FE ++  G     P
Sbjct: 942  KLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGL---DP 998

Query: 271  TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
                Y +MI  L ++ R EE  SL   M N G +PD+ TY  ++  + + G +EEA K  
Sbjct: 999  DLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIY 1058

Query: 331  EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            EE+   G  P++ TYN  ++    + N + A  +Y +M+  GC P+  T+  L
Sbjct: 1059 EELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 157/369 (42%), Gaps = 60/369 (16%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           +K  +E  KV+ +P++  +N L+D L K G V+ A +  C+  +  + P   TYNIL   
Sbjct: 529 IKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAG 588

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q  E M   G +P+  T+NT +D  CK   V  A  +F  M T      
Sbjct: 589 LGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNC--- 645

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   T+  +I   ++ ++++    L  H +     PD  T   +L G+  +G++E+A++
Sbjct: 646 RPDVLTFNTIIHGFIKQNQIKNAIWLF-HQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFR 704

Query: 329 FLEE-----------------MGN-------------------KGYPPDIVTYNCFLKVL 352
             E+                 MG                    +    D       +KVL
Sbjct: 705 ITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVL 764

Query: 353 CDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           C +K    A  ++ +   E+G  P+++ YN+LI  + E+   + A+  + EM   GCA D
Sbjct: 765 CKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPD 824

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
             TY  +ID      K+ E   L +E++ +G K     ++       VI +L   ++L  
Sbjct: 825 TFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYN------MVISNLVKSNRLDK 878

Query: 472 HMRKFYNPV 480
            M  +YN V
Sbjct: 879 AMDLYYNLV 887



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 19/296 (6%)

Query: 202 RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           RV  +V+  A  ++++  Q +   +         TY     +      + +A    E MR
Sbjct: 135 RVHRRVEDMAFVFDLMQRQIIRRNVD--------TYLIIFKSLFIRGGLRQAPSALEKMR 186

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G  ++   A +Y  +I  L+Q+   +E   +   M++ G  P + T+  ++       
Sbjct: 187 EAGFVLN---AYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRR 243

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            ++     LEEM + G  P+I TY   ++VL  +   DEA R+  RM + GC P V TY 
Sbjct: 244 NIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYT 303

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +LI       + D A   + +M       D  TY  ++D   DC  +++   +  E+   
Sbjct: 304 VLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEAD 363

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK--------FYNPVIARRLALNQ 489
           G       F   +  L   G +     L D MRK         YN +I+  L  N+
Sbjct: 364 GYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANR 419


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 176/385 (45%), Gaps = 32/385 (8%)

Query: 94  EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNK--- 150
           +  +  R+F W+  +   +H   +  L   +L S  Y AK++  + S LD   +N+K   
Sbjct: 74  DSDLTLRYFTWSQKELKLSH---SLELTFRMLHSLAY-AKKYSKIRSFLDNCVQNDKNYP 129

Query: 151 ---VFVPVDV---------LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
              +F  + V         +++ +  + +   +KT+    A     D   K  +      
Sbjct: 130 VSFIFHAISVSGDSFCANSIIVDILVWADAKNLKTRLGFEAFKRASDYGLKLSVTSCNPL 189

Query: 199 ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
           +   VK   K +A          L+EM   G  P+  T+N  ID FC  + V+ A  +F 
Sbjct: 190 MSGLVK-MYKADA---------ILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFA 239

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M  +G     P   TY  +I  L  N ++ E  +L   M+NS   P++ T+  +L G C
Sbjct: 240 EMNRQGV---KPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFC 296

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
               V++A +  E+M  +   P++ TYN  +   C ++N ++A  LY  M+  G +P V 
Sbjct: 297 KNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVS 356

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TYN LI      G+ +GA     EMD +    D+ TY +++D L +  ++++   LL+E+
Sbjct: 357 TYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLRLLDEM 416

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDL 463
             KGLK     +++ +   S  G+L
Sbjct: 417 CKKGLKPSQLTYNTMIDGYSKEGNL 441



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 94/206 (45%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T+ I+I     +  +     +   M   G  P+V TY  ++ G+C  GKV EA   
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL 272

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++M N    P+I+T+N  L   C NK   +A  L+  M +    P+V TYN+LI  Y +
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK 332

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
               + AF  +  M  +G   DV TY  +I GL     +E A   + E+  K LK     
Sbjct: 333 DENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLIT 392

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++  +  L   G++    +L D M K
Sbjct: 393 YNILMDSLCNKGEMKKTLRLLDEMCK 418



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 1/186 (0%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +M +  ++L  M   G  P+  T+  +++G C    V  A K   EM  +G  P++VTYN
Sbjct: 195 KMYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYN 254

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC+N   +EA  L  +M+     P++ T+N L++ + +      A E + +M K+
Sbjct: 255 SLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQ 314

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GA 465
               +V TY ++ID       +E+A  L   ++ KG+      ++  ++ L   GDL GA
Sbjct: 315 RITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGA 374

Query: 466 IHKLSD 471
            +++S+
Sbjct: 375 RNRVSE 380


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 147/352 (41%), Gaps = 51/352 (14%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL----------- 217
           K    P + + NL++ A+CK GLVD A  + + +   K +P+  TY  L           
Sbjct: 165 KTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRID 224

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +  L+EM   G  P + T+N  I+  CK   +     L + M  KG     P   TY 
Sbjct: 225 EAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCV---PNEVTYN 281

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG--------------- 321
            +I  L    ++++  SLL  M+ S C+P+  TY  ++ G+   G               
Sbjct: 282 TIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEER 341

Query: 322 --------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
                               K EEA    ++M  KG  P+IV Y+  +  LC     DEA
Sbjct: 342 GHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEA 401

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             +   M+  GC P+  TY+ LI  +F+ G    A   W EM K  C  +   Y V+I G
Sbjct: 402 KEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHG 461

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           L +  K+ EA  +   ++ +GL+     + S +  L   G +    KL + M
Sbjct: 462 LCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 513



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P     N+L++ LCK G +V   + +         PN  TYN +             +  
Sbjct: 240 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 299

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+     P++ TY T I+   K     +   L   +  +G          Y+ +I  
Sbjct: 300 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH---HANEYAYSTLISG 356

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + ++ EE   L   M+  GC P++  Y  +++G+C  GK++EA + L EM NKG  P+
Sbjct: 357 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 416

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+  +K      N  +A+R++  M +  C P+   Y++LI    E G+   A   W 
Sbjct: 417 AFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWT 476

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            M  RG   DV  Y  MI GL +   VE    L  E++
Sbjct: 477 HMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEML 514



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 33/337 (9%)

Query: 135 FRLVCSMLDYMKRNNKVFVPVDVLLMILKQY-----TEKI---------KVKTQPEINAL 180
           F  +  + D MKR  +VF+  + +L + + Y      EK          + + +  + + 
Sbjct: 80  FGTLFQVFDRMKRERRVFIEKNFIL-VFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSF 138

Query: 181 NLLLDALCKCGLVDYAETICK---RVKNKVKPNANTYNIL------------GMQTLEEM 225
           N +L+ + + GL   A    +     K  + PN  ++N++             ++   EM
Sbjct: 139 NSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREM 198

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
                 PD FTY T +D  CK   + EA  L + M+ +G     P++ T+ ++I  L + 
Sbjct: 199 AIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCF---PSSVTFNVLINGLCKK 255

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             M     L+ +M   GC+P+  TY  ++ G+CL GK+++A   L+ M      P+ VTY
Sbjct: 256 GDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTY 315

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  L       + + L   + E G   +   Y+ LIS  F+  + + A   W +M +
Sbjct: 316 GTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVE 375

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +GC  ++  Y  +IDGL    K++EA  +L E+VNKG
Sbjct: 376 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 412



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 28/245 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + + ++   QP I   + L+D LC+ G +D A+ I                      L E
Sbjct: 370 WKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI----------------------LCE 407

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G  P+ FTY++ I  F K     +A  +++ M         P    Y+++I  L +
Sbjct: 408 MVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCV---PNEICYSVLIHGLCE 464

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM--GNKGYPPDI 342
           + ++ E   +  HM+  G  PDV  Y  ++ G+C AG VE   K   EM        PD+
Sbjct: 465 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDV 524

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE-LGEPDGAFETWH 401
           VTYN  L+ LC   +   A+ L   M++ GC P + T N+ ++   E L  P    E   
Sbjct: 525 VTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLD 584

Query: 402 EMDKR 406
           E+  R
Sbjct: 585 ELVVR 589



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 53/292 (18%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N +++ LC  G +D A ++  R V +K  PN  TY  L            G+  L  + +
Sbjct: 281 NTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEE 340

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            GH  + + Y+T I    K     EA  L++ M  KG     P    Y+ +I  L +  +
Sbjct: 341 RGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGC---QPNIVVYSALIDGLCREGK 397

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEG------------------------------- 316
           ++E   +L  M+N GC P+  TY  +++G                               
Sbjct: 398 LDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSV 457

Query: 317 ----MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI--E 370
               +C  GK+ EA      M  +G  PD+V Y+  +  LC+  + +  L+L+  M+  E
Sbjct: 458 LIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQE 517

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               P V TYN+L+    +      A +  + M  RGC  D+ T  + ++ L
Sbjct: 518 SDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 342 IVTYNCFLKVLCDNKNGDEALRLY--GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           + ++N  L V+        AL  Y  G   +    P+V ++N++I    +LG  D A E 
Sbjct: 135 VRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEV 194

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           + EM  + C  DV TYC ++DGL    +++EA  LL+E+  +G       F+  +  L  
Sbjct: 195 FREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCK 254

Query: 460 IGDLGAIHKLSDHM 473
            GD+  + KL D+M
Sbjct: 255 KGDMVRVTKLVDNM 268


>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
          Length = 507

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 172/399 (43%), Gaps = 54/399 (13%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFE---------EKIAFRFFMWAGHQDNYAHEPLA 117
           N  +ALD +   ++   V  VL +F             ++A++FF+WA  Q+ Y H    
Sbjct: 125 NTRQALDEMRPRVSNALVREVLLKFVVSIDGVNRARYPRLAYKFFLWAEEQEGYRHGTSM 184

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           YNL++ I +        +RL+  M D         +PV          T  + V T    
Sbjct: 185 YNLILKIFAECGELKAMWRLLEDMTDKG-------LPVS-------SRTFHLLVCTSGRA 230

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL-------------EE 224
                L++   K    +Y            +P  N++N + + TL             ++
Sbjct: 231 GLRRRLVERFIKSSNFNY------------RPFRNSFNAI-LHTLLTIEQYSLIEWVHQK 277

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALV 283
           MI  GH+PD  TYN  +    +A+ +    D F + +   G    +P   TY +++  L 
Sbjct: 278 MIAEGHSPDVLTYNVVM----RAKYMLRKLDQFHKLLDEMGKNGLAPDLYTYNLLLHVLG 333

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           + D+     +LL +M + GC+P V  +  +++G+  AG +E    F +EM  KG  PD+V
Sbjct: 334 KGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFFDEMVKKGCQPDVV 393

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            Y   +         DEA + +  M+  G  P+V TYN +I     +GE D A     +M
Sbjct: 394 CYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIVGEFDKACSLLKDM 453

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + RGC  +   Y  ++  L +  K  EA  +++ + NKG
Sbjct: 454 ESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKG 492



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 81/166 (48%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           MI  G  PDV TY  V+    +  K+++ +K L+EMG  G  PD+ TYN  L VL     
Sbjct: 278 MIAEGHSPDVLTYNVVMRAKYMLRKLDQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDK 337

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
              AL L   M +VGC P+V  +  LI      G  +     + EM K+GC  DV  Y V
Sbjct: 338 PLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTV 397

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           MI G     + +EA    ++++ +G       ++S +  L ++G+ 
Sbjct: 398 MITGYVAAGEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIVGEF 443



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 95/233 (40%), Gaps = 27/233 (11%)

Query: 112 AHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQYTE 167
            H P  L YN+++      KY  ++      +LD M +N         ++LL +L +  +
Sbjct: 282 GHSPDVLTYNVVM----RAKYMLRKLDQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDK 337

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETI--CKRVKNKVKPNANTYNILGMQTLEEM 225
            +       +N LN + D  C   ++ +   I    R  N     A  Y        +EM
Sbjct: 338 PLAA-----LNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNL---EACKY------FFDEM 383

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           ++ G  PD   Y   I  +  A    EA   F+ M  +G     P   TY  MI  L   
Sbjct: 384 VKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQL---PNVYTYNSMICGLCIV 440

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
              ++  SLL  M + GC P+ + Y  ++  +  AGK  EA   ++ M NKG+
Sbjct: 441 GEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKGH 493



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM- 333
           Y +++    +   ++  + LL  M + G LP  S    +L  +C +G+     + +E   
Sbjct: 185 YNLILKIFAECGELKAMWRLLEDMTDKG-LPVSSRTFHLL--VCTSGRAGLRRRLVERFI 241

Query: 334 --GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
              N  Y P   ++N  L  L   +       ++ +MI  G  P V TYN+++   + L 
Sbjct: 242 KSSNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLR 301

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + D   +   EM K G A D+ TY +++  L    K   A  LL  + + G       F 
Sbjct: 302 KLDQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFT 361

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRK 475
           + +  LS  G+L A     D M K
Sbjct: 362 NLIDGLSRAGNLEACKYFFDEMVK 385


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 149/303 (49%), Gaps = 19/303 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D+ L +LK+     K K + ++   N ++D LCK   +D A  +  +++ K ++P+  T
Sbjct: 236 IDLALSLLKKME---KGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFT 292

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              + L  MI+    P+  T++  ID F K   + EA  L++ M 
Sbjct: 293 YNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +      P   TY+ +I     +DR++E   +   MI+  C P+V TY  +++G C A 
Sbjct: 353 KRSI---DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +VEE  +   EM  +G   + VTYN  ++ L    + D A +++ +M+  G  P + TY+
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+    + G+ + A   +  + K     D+ TY +MI+G+    KVE+   L   +  K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 442 GLK 444
           G+K
Sbjct: 530 GVK 532



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 16/276 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++     +++ LCK G +D A ++ K++ K K++ +   YN +               
Sbjct: 217 QPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFA 276

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M   G  PD FTYN+ I   C     ++A+ L   M  +     +P   T++ +I 
Sbjct: 277 LFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKI---NPNVVTFSALID 333

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A V+  ++ E   L   MI     PD+ TY  ++ G C+  +++EA    E M +K   P
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  +K  C  K  +E + L+  M + G   +  TYN LI   F+ G+ D A + +
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
            +M   G   D+ TY +++DGL    K+E+A  + E
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E ++ +  P I   N LL A+ K    D   ++ +R++N ++  +  +YNIL      
Sbjct: 68  FGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCR 127

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ PD  T ++ ++ +C ++ +++A  L + M   G     P 
Sbjct: 128 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY---KPD 184

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G ++ A   L+
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLK 244

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M       D+V YN  +  LC  K+ D+A  L+ +M   G  P V TYN LIS     G
Sbjct: 245 KMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYG 304

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A      M +R    +V T+  +ID      K+ EA  L +E++ + +
Sbjct: 305 RWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P++   N L+  LC  G   D +  +   ++ K+ PN  T++ L              +
Sbjct: 287 RPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EMI+    PD FTY++ I+ FC    + EA  +FE M +K      P   TY  +I 
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF---PNVVTYNTLIK 403

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  R+EE   L   M   G + +  TY  +++G+  AG  + A K  ++M + G PP
Sbjct: 404 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 463

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+TY+  L  LC     ++AL ++  + +    P + TYN++I    + G+ +  ++ +
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 523

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +  +G   +V  Y  MI G       EEA  L  E+   G
Sbjct: 524 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 565



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 143/330 (43%), Gaps = 24/330 (7%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTE 167
             YN +I  L +    +   RL+ +M++     N V        FV    L+   K Y E
Sbjct: 291 FTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------- 217
            IK    P+I   + L++  C    +D A+ + + + +K   PN  TYN L         
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
              GM+   EM Q G   +  TYNT I    +A     A  +F+ M + G     P   T
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV---PPDIIT 467

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y+I++  L +  ++E+   +  ++  S   PD+ TY  ++EGMC AGKVE+ +     + 
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P+++ Y   +   C     +EA  L+  M E G  P    YN LI      G+  
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKA 587

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            + E   EM   G   D  T  ++I+ L D
Sbjct: 588 ASAELIKEMRSCGFVGDASTISMVINMLHD 617



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 121/265 (45%), Gaps = 4/265 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM+Q    P    +N  +    K +       L E M+   +   S    +Y I+I    
Sbjct: 70  EMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQ---NLRISYDLYSYNILINCFC 126

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  ++    ++LG M+  G  PD+ T   +L G C + ++ +A   +++M   GY PD V
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTV 186

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           T+N  +  L  +    EA+ L  +M++ GC P + TY  +++   + G+ D A     +M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM 246

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +K     DV  Y  +IDGL     +++A  L  ++  KG++     ++S +  L   G  
Sbjct: 247 EKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRW 306

Query: 464 G-AIHKLSDHMRKFYNPVIARRLAL 487
             A   LS+ + +  NP +    AL
Sbjct: 307 SDASRLLSNMIERKINPNVVTFSAL 331



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  L + G  D A+ I K+ V + V P+  TY+IL             +   E + +
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +   
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV---KPNVIIYTTMISGFCRKGL 550

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            EE  +L   M   G LPD   Y  ++      G    + + ++EM + G+  D  T + 
Sbjct: 551 KEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISM 610

Query: 348 FLKVLCDNK 356
            + +L D +
Sbjct: 611 VINMLHDGR 619


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 131/275 (47%), Gaps = 13/275 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++     ++D LC+ G +D A  + + +K K V+P+  T++ L             ++ 
Sbjct: 79  PDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKL 138

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +E++      D  + +  I   C+ R + EA +LF+ M  +      P   TY  +I  
Sbjct: 139 YKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDG 198

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++  +E+   +LG M    C+P+V TY  +L G+C AG +++A      M +KG  P+
Sbjct: 199 FCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPN 258

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC     D A  L   M    C     +YN L+  Y  LG  + A + + 
Sbjct: 259 VVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFK 318

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           EM  + C  D  TY  ++ G  + S++EEA FLLE
Sbjct: 319 EMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLE 353



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 137/291 (47%), Gaps = 21/291 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL------------GMQ 220
           P++   + +++  CK G +D A  I + +  ++ + P+  TY  +              +
Sbjct: 43  PDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACE 102

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM   G  PD FT++  I  +C AR V EA  L++ + T    +    A + + +I 
Sbjct: 103 MVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLD---AVSSSALIT 159

Query: 281 ALVQNDRMEECFSLLGHMI---NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
            L +  R+ E + L   M    +    PDV TY  +++G C +G +E+A K L  M  + 
Sbjct: 160 GLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRK 219

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P++VTY+  L  LC   + D+AL L+ RM   GC P+V TY  LI       + D A 
Sbjct: 220 CVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAAR 279

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
               EM    C  D  +Y  ++DG     ++EEA  L +E+  K   LP R
Sbjct: 280 LLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSC-LPDR 329



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 135/310 (43%), Gaps = 21/310 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P++     L+D  CK G ++ A  +   ++  K  PN  TY+ L             + 
Sbjct: 186 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 245

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M   G  P+  TY T I   C A  V  A  L + M    +T       +Y  ++ 
Sbjct: 246 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT---ATCCPADTVSYNALLD 302

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYP 339
              +  R+EE   L   M    CLPD  TY  ++ G C A ++EEA   LE M    G  
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+VTY+  +      K   EA      MI     P+  TY+ LI    + G  + A E 
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
              +DK     DV TY ++I+GL    + EEA  LLEE+VNK ++     F+S +  L  
Sbjct: 423 LKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCR 478

Query: 460 IGDLGAIHKL 469
           +GD+    KL
Sbjct: 479 LGDMDEAWKL 488



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 135/323 (41%), Gaps = 29/323 (8%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANT 213
           +D  L + ++ T K  V   P +     L+  LC    VD A  +   +     P +  +
Sbjct: 240 LDQALDLFRRMTSKGCV---PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVS 296

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              Q  +EM      PD  TY   +  FC A  + EA  L E M+
Sbjct: 297 YNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 356

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           T       P   TY+I++    +  R  E    +  MI     P+  TY  +++G+C AG
Sbjct: 357 TAAGI--DPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAG 414

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +V  A + L+ +      PD+VTY   ++ LC     +EAL L   M+     PSV T+N
Sbjct: 415 RVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFN 470

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            +I     LG+ D A++    M   G    + TY  +++G     ++E A  L E +  K
Sbjct: 471 SVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRK 530

Query: 442 GLK-------LPYRKFDSYLMQL 457
             K       +P + F + +  L
Sbjct: 531 AKKSSSAANLVPEQAFSALIRGL 553



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 123/288 (42%), Gaps = 41/288 (14%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           AP+  TYN  ++  CKAR+ ++A ++ + MR   S   +P   TY+ +I    +   M+ 
Sbjct: 6   APNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSV--APDLVTYSTVINGFCKQGEMDR 63

Query: 291 CFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
              +L  M+   G  PDV TY  V++G+C  GK++ A + + EM  KG  PD  T++  +
Sbjct: 64  ACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALI 123

Query: 350 KVLCDNKNGDEALRLYGRMI-------------------------------------EVG 372
              C+ +  DEAL+LY  ++                                     E G
Sbjct: 124 TGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDG 183

Query: 373 CW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            W P V TY  LI  + + G  + A +    M+ R C  +V TY  ++ GL     +++A
Sbjct: 184 AWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 243

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
             L   + +KG       + + +  L     + A   L D M     P
Sbjct: 244 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCP 291



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 176/434 (40%), Gaps = 61/434 (14%)

Query: 55  YEAIIDNSNAYDNMEKALDSLGV---------PLTTDSVV-GVLQRFQFEEKI-AFRFFM 103
           Y A+ID      N+EKA+  LGV          +T  S++ G+ +    ++ +  FR   
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 251

Query: 104 WAG------------HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151
             G            H    AH+  A  L++D +++T   A       ++LD   R  ++
Sbjct: 252 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYN-ALLDGYCRLGRI 310

Query: 152 FVPVDVLLMILKQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRVKNK--VK 208
                      KQ  +++  K+  P+      L+   C    ++ A  + + +K    + 
Sbjct: 311 EEA--------KQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P+  TY+I+              + ++EMI    AP+  TY++ ID  CKA  V  A ++
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            +        +  P   TY I+I  L   DR EE  +LL  M+N    P V T+  V+  
Sbjct: 423 LK-------NVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGA 475

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C  G ++EA+K L  M   G  P +VTY   L+        + A  L+  M       S
Sbjct: 476 LCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSS 535

Query: 377 V-------QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
                   Q ++ LI    +  E D A     E+  R C    +    ++DGL    + E
Sbjct: 536 SAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTE 595

Query: 430 EACFLLEEVVNKGL 443
           EA  L+  +   GL
Sbjct: 596 EAGKLINSISKVGL 609



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 135/318 (42%), Gaps = 21/318 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K  P +   + LL  LCK G +D A  + +R+ +K   PN  TY  L             
Sbjct: 219 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 278

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
              ++EM       D  +YN  +D +C+   + EA  LF+ M  K      P   TY  +
Sbjct: 279 RLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCL---PDRITYTCL 335

Query: 279 IVALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +       R+EE   LL +M   +G  PDV TY  V+ G   A +  EA +F++EM  + 
Sbjct: 336 VRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN 395

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ VTY+  +  LC     + A+ +   + +    P V TY ++I         + A 
Sbjct: 396 VAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEAL 451

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               EM  +     V T+  +I  L     ++EA  LL  +   GL+     + + L   
Sbjct: 452 TLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGF 511

Query: 458 SVIGDLGAIHKLSDHMRK 475
           S  G +   ++L + MR+
Sbjct: 512 SRTGRMEIAYELFEVMRR 529


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 128/278 (46%), Gaps = 25/278 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E +     P +   N+L+DALCK G ++ A  +                      L+ 
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHL----------------------LKL 333

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MIQ G +PD FTYNT ID FC    + +A DLF  M +KG       A +Y ++I    +
Sbjct: 334 MIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETD---AVSYNVLINGYCK 390

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           + RM E   L   M+    +P V TY  +L G+   GKV +A+    EM      P+  T
Sbjct: 391 SGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCT 450

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  L  LC N +  EA+ L+  +      PS+Q +N LI    +  + + A E ++ + 
Sbjct: 451 YNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLS 510

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             G   +V TY VMI GL    ++E A  L   +  KG
Sbjct: 511 HEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKG 548



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 131/298 (43%), Gaps = 18/298 (6%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-- 217
           ++  Y     +   P+   LN+L++  C    VD+    + + ++    PN  T+  L  
Sbjct: 111 VISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVK 170

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK---- 263
                         L +M++MG+ P+  TY T ++  C       A  L E M       
Sbjct: 171 GLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGF 230

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G TI  P    Y  +I +L ++  +++   L   M   G  PDV  Y  ++ GMC  G+ 
Sbjct: 231 GVTIK-PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRW 289

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E A     EM ++G  P++VT+N  +  LC     +EA  L   MI+ G  P   TYN L
Sbjct: 290 EGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTL 349

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           I  +   G  D A + +  M+ +G   D  +Y V+I+G     ++ EA  L  E++ K
Sbjct: 350 IDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCK 407



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 124/281 (44%), Gaps = 25/281 (8%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH 230
           V  +P +     ++D+LCK GL+D                       G +   EM   G 
Sbjct: 232 VTIKPNLVCYCTIIDSLCKDGLIDK----------------------GKELFLEMKGRGI 269

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +PD   Y++ I   C       A  LF  M  +G     P   T+ ++I AL +  +MEE
Sbjct: 270 SPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGV---HPNVVTFNVLIDALCKAGKMEE 326

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              LL  MI  G  PD  TY  +++G CL G++++A      M +KG   D V+YN  + 
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
             C +    EA +LY  M+     P+V TYN L++  F  G+   A+  + EM       
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTP 446

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           +  TY +++DGL   + + EA  L   + N   +   + F+
Sbjct: 447 ESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFN 487



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 46/257 (17%)

Query: 230 HAPDNFTYNTAIDTFCKARMV--TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +APD       + + CK+  +  +EA  +F  +     T   P   ++  ++ A+ +  R
Sbjct: 51  NAPDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPT---PPISSFNTLLGAVAKIKR 107

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             +  SL   M   G  PD  T   ++   C   KV+     L EM  +G+ P+ VT+  
Sbjct: 108 YFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTS 167

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML-------------ISMYFELGEPD 394
            +K LC      EA  L  +M+ +G  P+V TY  L             + ++ E+   +
Sbjct: 168 LVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGN 227

Query: 395 GAF----------------------------ETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           G F                            E + EM  RG + DV  Y  +I G+    
Sbjct: 228 GGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTG 287

Query: 427 KVEEACFLLEEVVNKGL 443
           + E A  L  E+V++G+
Sbjct: 288 RWEGAKGLFNEMVDEGV 304



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 2/171 (1%)

Query: 305 PDVSTYKEVLEGMCLAGKVE--EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           PD    +  L+  C +G ++  EA+     + +    P I ++N  L  +   K   + +
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            LY RM  +G  P   T N+LI+ Y  L + D       EM +RG + +  T+  ++ GL
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGL 172

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              S++ EA  LL ++V  G +     + + L  L + G+     KL + M
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEM 223



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 25/142 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP I   N L+D LCK   ++ A  +  R+ ++                      G  P+
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLSHE----------------------GLEPN 517

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TY   I   CK+  +  A DLF  M  KG    +P   T+  ++    QND M++   
Sbjct: 518 VITYTVMIHGLCKSGQLENAKDLFLGMEEKGC---APNLVTFNTLMRGFCQNDEMQKVVE 574

Query: 294 LLGHMINSGCLPDVSTYKEVLE 315
           LL  M      PD ST   V++
Sbjct: 575 LLQEMAEKDFSPDASTISIVVD 596


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 139/291 (47%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------ 217
           YTE +     P++   ++L+   C  G ++ A + + + V   + P+  TY IL      
Sbjct: 221 YTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCK 280

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++     D   Y+T +D +C    V  A  +F  M   G T   P 
Sbjct: 281 EGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVT---PD 337

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y+IMI  L +  R++E  +L   +     +PD  TY  +++ +C +G++   +   +
Sbjct: 338 VHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFD 397

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G PPD++TYN  +  LC N + D A+ L+ +M +    P+V T+ +L+    ++G
Sbjct: 398 EMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVG 457

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               A E + ++  +G   +V TY VMI+GL     ++EA  L   + + G
Sbjct: 458 RLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNG 508



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 16/290 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------- 217
           E +     P+I    +L+DALCK G V  AE +    VK  V  +   Y+ L        
Sbjct: 258 EMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVN 317

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +    M QMG  PD   Y+  I+  CK + V EA +LFE +  K      P   
Sbjct: 318 EVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMV---PDTV 374

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L ++ R+   + L   M++ G  PDV TY  +++ +C  G ++ A     +M
Sbjct: 375 TYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKM 434

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++   P++ T+   L  LC       AL  +  ++  G   +V+TY ++I+   + G  
Sbjct: 435 KDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLL 494

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A      M+  GC  D  T+ +MI   FD  + ++A  L+ E++ +GL
Sbjct: 495 DEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 16/290 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   ++++D LCK  LVD A +   + V   + P+  TY+IL             + 
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAID 254

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM+     PD +TY   +D  CK   V EA ++   M      +       Y+ ++ 
Sbjct: 255 LLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLD---VVVYSTLMD 311

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                + +     +   M   G  PDV  Y  ++ G+C   +V+EA    EE+  K   P
Sbjct: 312 GYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVP 371

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTY   +  LC +        L+  M++ G  P V TYN LI    + G  D A   +
Sbjct: 372 DTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALF 431

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           ++M  +    +V T+ +++DGL    +++ A    ++++ KG  L  R +
Sbjct: 432 NKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTY 481



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 135/315 (42%), Gaps = 16/315 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------G 218
           + +P+   LN++++  C  G V  A   + K +K   +PN  T N L             
Sbjct: 88  EVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEA 147

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++  ++++  G      +Y   I+  CK   + E       +R        P    Y+++
Sbjct: 148 LRFHDKVLAQGFRLSGISYGILINGVCK---IGETRAAIRLLRRIERWSIRPNVVIYSMI 204

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L ++  ++E + L   M+  G  PDV TY  ++ G C+ G++  A   L EM  +  
Sbjct: 205 IDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENI 264

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PDI TY   +  LC      EA  +   M++      V  Y+ L+  Y  + E + A  
Sbjct: 265 NPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKR 324

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            ++ M + G   DV  Y +MI+GL    +V+EA  L EE+  K +      + S +  L 
Sbjct: 325 VFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLC 384

Query: 459 VIGDLGAIHKLSDHM 473
             G +  +  L D M
Sbjct: 385 KSGRISYVWDLFDEM 399



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 17/310 (5%)

Query: 182 LLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQM 228
           +L++ +CK G    A  + +R++   ++PN   Y+++                  EM+  
Sbjct: 168 ILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGK 227

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G +PD  TY+  +  FC    +  A DL   M  +     +P   TY I++ AL +  ++
Sbjct: 228 GISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENI---NPDIYTYTILVDALCKEGKV 284

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E  ++L  M+ +    DV  Y  +++G CL  +V  A +    M   G  PD+  Y+  
Sbjct: 285 KEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIM 344

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC  K  DEAL L+  + +    P   TY  LI    + G     ++ + EM  RG 
Sbjct: 345 INGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQ 404

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIH 467
             DV TY  +ID L     ++ A  L  ++ ++ ++     F   L  L  +G L  A+ 
Sbjct: 405 PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALE 464

Query: 468 KLSDHMRKFY 477
              D + K Y
Sbjct: 465 FFQDLLTKGY 474



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 54/232 (23%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           HQ N   + + Y  +ID L  +   +  + L   MLD  +                    
Sbjct: 365 HQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQ-------------------- 404

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEM 225
                   P++   N L+DALCK G +D A  +  ++K++ ++PN  T+ IL        
Sbjct: 405 -------PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTIL-------- 449

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
                          +D  CK   +  A + F+ + TKG  ++    +TY +MI  L + 
Sbjct: 450 ---------------LDGLCKVGRLKNALEFFQDLLTKGYCLN---VRTYTVMINGLCKE 491

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
             ++E  +L   M ++GC+ D  T++ ++       + ++A K + EM  +G
Sbjct: 492 GLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 54/366 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------- 217
           + +  +++        N++L  LC  G    A  + +++ +   PNA TYN +       
Sbjct: 104 FADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPS---PNAVTYNTVIAGFCAR 160

Query: 218 -----GMQTLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                G++ + EM + G  APD +TY T I  +CK   V +A  +F+ M T+G     P 
Sbjct: 161 GRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKV--EPN 218

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           A  Y  +I        +E      G M++ G    V+TY   +  + + G+  EA+  +E
Sbjct: 219 AVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVE 278

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL----------------------------- 362
           EMG KG  PD  TYN  +   C      +A+                             
Sbjct: 279 EMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKG 338

Query: 363 ------RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
                 RL+   +  G  P +  YN LI+ +   G+ D AFE   EM+K+    D  TY 
Sbjct: 339 MVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYN 398

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH-MRK 475
            ++ GL    +++EA  L+EE+  +G++     +++ +   S+ GD+    K+ D  M K
Sbjct: 399 TLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGK 458

Query: 476 FYNPVI 481
            +NP +
Sbjct: 459 GFNPTL 464



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 128/286 (44%), Gaps = 18/286 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL-------- 222
           K +P     N L+   C  G ++ A     + V   V     TYN+  + TL        
Sbjct: 214 KVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLF-VHTLFMEGRAAE 272

Query: 223 -----EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
                EEM + G APD FTYN  I+ +CK     +A  +FE M  KG      T  TY  
Sbjct: 273 AHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGI---RATVVTYTS 329

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I AL     ++E   L    +  G  PD+  Y  ++   C  G ++ A++ + EM  K 
Sbjct: 330 LIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKR 389

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD VTYN  ++ LC     DEA  L   M + G  P + +YN LIS Y   G+   A 
Sbjct: 390 ITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAV 449

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   EM  +G    + TY  MI GL    +  +A  L++E+V  G+
Sbjct: 450 KVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGI 495



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 136/327 (41%), Gaps = 19/327 (5%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL- 217
           I+++  E+  +   P+      ++   CK G V+ A  +   +  + KV+PNA  YN L 
Sbjct: 169 IMREMRERGGI--APDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALI 226

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++   EM+  G +    TYN  + T        EA  L E M  KG  
Sbjct: 227 GGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGL- 285

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             +P A TY I+I    +  + ++   +   M+  G    V TY  ++  + + G V+E 
Sbjct: 286 --APDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQET 343

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +   +   +G  PD+  YN  +   C   + D A  + G M +    P   TYN L+  
Sbjct: 344 DRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRG 403

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
              LG  D A     EM KRG   D+ +Y  +I G      +++A  + +E++ KG    
Sbjct: 404 LCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPT 463

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              +++ +  L + G  G    L   M
Sbjct: 464 LLTYNAMIKGLCLNGQGGDAEDLVKEM 490


>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1072

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 187/449 (41%), Gaps = 57/449 (12%)

Query: 58   IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
            I+ +S  +  M++AL+   +  T   V+ +L         A +FF W G Q  Y H    
Sbjct: 662  ILSSSKDWCIMQEALEKCTLQFTPGLVLEILHNCSMHGNAALKFFSWLGVQTGYCHTKET 721

Query: 118  YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
            YN+ + I      + K F+ + S+   M+R   +  P D   +++ QY            
Sbjct: 722  YNMAMKISG----REKDFKHMRSLFYEMRRKGCLITP-DTWAIMIMQYG----------- 765

Query: 178  NALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--------------GMQTL 222
                       + GL + + +T  +   N   PN +TY  L               ++  
Sbjct: 766  -----------RTGLTEISLKTFTEMKDNGYIPNDSTYKYLLISLCGKKGRKVDEAIKIF 814

Query: 223  EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             EMI+  + PD     T +   C+A  ++EA    + +   G TI      +Y++ I AL
Sbjct: 815  HEMIRTRYIPDREVVGTYLSCLCEAGRLSEARKSTDSLCRIGYTIPL----SYSLYIRAL 870

Query: 283  VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             ++ R+EE  SLL  +       D  TY  ++ G+   G+ EEA   +E M   G  P +
Sbjct: 871  CRSGRLEEALSLLDEVGTERSTLDQYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTV 930

Query: 343  VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
              Y   +      K  ++A++++ +M + GC P+V TY+ LI  Y  +   D A+   + 
Sbjct: 931  HVYTSLIVHFFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNH 990

Query: 403  MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
            +  +G   D  TY + I  L    K EEA  LL  ++  G+      F +    L+  G 
Sbjct: 991  LKLKGPKPDFKTYSMFISCLCKAGKSEEALQLLSRMLEDGIVPSTINFRTVFFGLNCEGK 1050

Query: 463  LGAIHKLSDHMRKFYNPVIARRLALNQKR 491
                   +D  R     V+ ++LAL  KR
Sbjct: 1051 -------NDLAR----TVMQQKLALKSKR 1068



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 173/421 (41%), Gaps = 60/421 (14%)

Query: 39  KVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
           ++ D +   VS V +    I+   N    ME+ L++LG     + V  VL+R      +A
Sbjct: 134 QIRDLNEIDVSPVVREITGIVRAENDLVAMEERLENLGFYFEPEIVEKVLKRCFKVPHLA 193

Query: 99  FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN--KVFVPVD 156
           FRFF W   +D + H    Y  M+ I      +AK+F++V  +++ M++N+  K      
Sbjct: 194 FRFFSWVKMRDGFCHTTKTYYTMLYIAG----EAKEFKVVDDLVEEMEKNSCEKDIKTWS 249

Query: 157 VLLMILKQ---------YTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKR-VKN 205
           +L+    +         + EK+K    +P+     +++ +LC  G  + A    K  V+ 
Sbjct: 250 ILISQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQK 309

Query: 206 KVKPNANTYNILGMQTLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            ++ + + Y IL +   +            +M ++   P++      + +FC A  + EA
Sbjct: 310 DMRLDLSLYKILLISMAKSGDVGAVHLVANDMSRLSQIPEHDVNVCILKSFCVAGKIREA 369

Query: 254 ADL------------FEFMRT------KGSTISSPT-------------AKTYAIMIVAL 282
            +L            +E++ T      +G  I+                AK Y I+I   
Sbjct: 370 LELIRDLKNKDILIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRNLIDAKIYGIIINGY 429

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           ++   + +   L   M  SG  P  STY E+++ +    + ++ ++   EM  +G   D 
Sbjct: 430 LRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRVDS 489

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V     +       +  EA  ++  M + G  P+ ++Y++ I     +   D   +  ++
Sbjct: 490 VATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFIKELCRVSRTDEILKVLYK 549

Query: 403 M 403
           M
Sbjct: 550 M 550



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 116/317 (36%), Gaps = 72/317 (22%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EEM +     D  T++  I  F KA+++ +A   FE M+T G     P  K Y +M+ +
Sbjct: 233 VEEMEKNSCEKDIKTWSILISQFGKAKLIGKALLFFEKMKTSGC---EPDEKIYKMMVHS 289

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKE----------------------------- 312
           L    + E   +    M+      D+S YK                              
Sbjct: 290 LCNAGKGEVALAFYKEMVQKDMRLDLSLYKILLISMAKSGDVGAVHLVANDMSRLSQIPE 349

Query: 313 ------VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN----------- 355
                 +L+  C+AGK+ EA + + ++ NK    D       +K LC             
Sbjct: 350 HDVNVCILKSFCVAGKIREALELIRDLKNKDILIDYEYLGTLVKGLCRGDRITDAVEIVE 409

Query: 356 -----------------------KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
                                  K+  +A+ L+ RM E G  P   TY  L+   F L +
Sbjct: 410 IMKKRNLIDAKIYGIIINGYLRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFNLNQ 469

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D  FE ++EM +RG   D      ++      + + EA  +   + +KG    ++ +  
Sbjct: 470 YDKGFELFNEMLERGIRVDSVATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSI 529

Query: 453 YLMQLSVIGDLGAIHKL 469
           ++ +L  +     I K+
Sbjct: 530 FIKELCRVSRTDEILKV 546



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 13/239 (5%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
           DV + ILK +    K++      AL L+ D   K  L+DY E +   VK   + +  T  
Sbjct: 351 DVNVCILKSFCVAGKIR-----EALELIRDLKNKDILIDY-EYLGTLVKGLCRGDRITDA 404

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           +     + E+++  +  D   Y   I+ + + + +++A +LF+ M+  G     P   TY
Sbjct: 405 V----EIVEIMKKRNLIDAKIYGIIINGYLRKKDLSKAIELFQRMKESGI---QPITSTY 457

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++  L   ++ ++ F L   M+  G   D      ++        + EA++    M +
Sbjct: 458 TELMQCLFNLNQYDKGFELFNEMLERGIRVDSVATMAIVAAHVRQNHISEAWEVFNTMKD 517

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           KG  P   +Y+ F+K LC     DE L++  +M     + +   +N+ I+   + GE D
Sbjct: 518 KGANPTWKSYSIFIKELCRVSRTDEILKVLYKMQASKIFINNDIFNLAIAFMEKKGEVD 576



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 72/177 (40%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T KTY  M+    +    +    L+  M  + C  D+ T+  ++     A  + +A  F 
Sbjct: 209 TTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLIGKALLFF 268

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           E+M   G  PD   Y   +  LC+   G+ AL  Y  M++      +  Y +L+    + 
Sbjct: 269 EKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQKDMRLDLSLYKILLISMAKS 328

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           G+        ++M +     + D    ++       K+ EA  L+ ++ NK + + Y
Sbjct: 329 GDVGAVHLVANDMSRLSQIPEHDVNVCILKSFCVAGKIREALELIRDLKNKDILIDY 385



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 64/140 (45%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+     TY   L +  + K       L   M +  C   ++T+++LIS + +      A
Sbjct: 205 GFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLIGKA 264

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + +M   GC  D   Y +M+  L +  K E A    +E+V K ++L    +   L+ 
Sbjct: 265 LLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQKDMRLDLSLYKILLIS 324

Query: 457 LSVIGDLGAIHKLSDHMRKF 476
           ++  GD+GA+H +++ M + 
Sbjct: 325 MAKSGDVGAVHLVANDMSRL 344



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 20/169 (11%)

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
           N N Y+  G +   EM++ G   D+      +    +   ++EA ++F  M+ KG+   +
Sbjct: 466 NLNQYD-KGFELFNEMLERGIRVDSVATMAIVAAHVRQNHISEAWEVFNTMKDKGA---N 521

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT K+Y+I I  L +  R +E   +L  M  S    +   +   +  M   G+V+   K 
Sbjct: 522 PTWKSYSIFIKELCRVSRTDEILKVLYKMQASKIFINNDIFNLAIAFMEKKGEVDNVQKV 581

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            +           +   C L  L D  +G++ L     ++E  C  S Q
Sbjct: 582 KQ-----------MQRICRLHSLQDEGSGEQEL-----LVEQNCNQSEQ 614


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 146/330 (44%), Gaps = 17/330 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN--ILGM----------Q 220
           +P I   N ++   C  G V+ A+ I   +K  K++P++ TY   I GM          +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM+Q G  P    YNT ID FC    +  A+   + M  KG    SPT  TY  +I 
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGI---SPTMSTYNSLIH 369

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL    R +E   ++  +   G  PD  TY  ++ G C     ++A+   +EM   G  P
Sbjct: 370 ALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKP 429

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
              TY   L VL       EA  L+ ++   G  P    +N LI  +       GAFE  
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELL 489

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +MD+     D  T+  ++ G     KVEEA  L +E+  +G+K  +  F++ +   S  
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549

Query: 461 GDLGAIHKLSDHM-RKFYNPVIARRLALNQ 489
           GD+    ++ + M    +NP +    AL Q
Sbjct: 550 GDIKDAFRVRNEMLDTGFNPTVLTYNALVQ 579



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 137/294 (46%), Gaps = 16/294 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---- 217
           K + E ++   +P     N L+D  C  G +D A       +K  + P  +TYN L    
Sbjct: 312 KIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                       ++E+ + G +PD  TYN  I+ +C+     +A  L + M   G     
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGI---K 428

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT KTY  ++  L + +RM+E   L   + + G LPD   +  +++G C    V+ A++ 
Sbjct: 429 PTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFEL 488

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L++M     PPD VT+N  ++  C     +EA  L+  M   G  P   ++N LIS Y  
Sbjct: 489 LKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSR 548

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G+   AF   +EM   G    V TY  ++ GL    + + A  LL+E+V+KG+
Sbjct: 549 RGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 3/235 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM ++      +T+N  I+  CK   + +A D    M T G     P   TY  ++    
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGV---KPNIVTYNTIVHGYC 267

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            + R+E   ++L  M      PD  TY  ++ GMC  G++EEA K  EEM  KG  P  V
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            YN  +   C+  N D A      M++ G  P++ TYN LI   F     D A     E+
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            ++G + D  TY ++I+G   C+  ++A  L +E++  G+K   + + S L  LS
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 124/269 (46%), Gaps = 16/269 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E +K    P ++  N L+ AL      D AE + K ++ K + P+A TYNIL        
Sbjct: 351 EMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA 410

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                    +EM+  G  P   TY + +    K   + EA DLF+ + ++G     P A 
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL---PDAI 467

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +  +I     N  ++  F LL  M      PD  T+  +++G C  GKVEEA +  +EM
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PD +++N  +       +  +A R+   M++ G  P+V TYN L+    +  E 
Sbjct: 528 KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEG 587

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           D A E   EM  +G   D  TY  +I+G+
Sbjct: 588 DLAEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 1/229 (0%)

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           ++FEF+      +   ++  +  +I +    +R +E F     M   G LP + T   +L
Sbjct: 134 EIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLL 193

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                  + E A+    EM        + T+N  + VLC      +A    G M   G  
Sbjct: 194 SLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVK 253

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P++ TYN ++  Y   G  + A      M ++    D  TY  +I G+    ++EEA  +
Sbjct: 254 PNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKI 313

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNPVIA 482
            EE+V KGL+     +++ +      G+L       D M +K  +P ++
Sbjct: 314 FEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 38/245 (15%)

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           +  ++  I + C      EA + F  M+ KG     PT +T   ++   ++ +R E  + 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVL---PTIETCNSLLSLFLKLNRTEAAWV 207

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M        V T+  ++  +C  GK+++A  F+  M   G  P+IVTYN  +   C
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 354 DN---------------------------------KNG--DEALRLYGRMIEVGCWPSVQ 378
            +                                 K G  +EA +++  M++ G  PS  
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            YN LI  +   G  D A     EM K+G +  + TY  +I  LF   + +EA  +++E+
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 439 VNKGL 443
             KG+
Sbjct: 388 QEKGI 392


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y   +    +P+    N+++D L K G LV   E + + V  + +PN  TY IL      
Sbjct: 365 YNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCK 424

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + +  M   G + +   YN  I   CK   + EA  LF  M  KG     P 
Sbjct: 425 QGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGC---KPD 481

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L +N +MEE  SL   M   G + +  TY  ++    +   +++A+K ++
Sbjct: 482 IYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVD 541

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G P D +TYN  +K LC     ++ L L+  M+  G +P++ + N+LIS     G
Sbjct: 542 EMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTG 601

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + + A +   +M  RG   D+ TY  +I+GL     V+EA  L  ++ ++G++
Sbjct: 602 KVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIR 654



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 140/304 (46%), Gaps = 26/304 (8%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           L+  L+   E +  + +P +    +L++  CK G ++ A  I   +  K +  N   YN 
Sbjct: 393 LVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNC 452

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             +Q   EM   G  PD +T+N+ I+  CK   + EA  L+  M  +G
Sbjct: 453 LICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEG 512

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
              ++    TY  ++ A +  D +++ F L+  M+  GC  D  TY  +++ +C  G VE
Sbjct: 513 VIANT---VTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVE 569

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +     EEM  KG  P I++ N  +  LC     ++AL+    MI  G  P + TYN LI
Sbjct: 570 KGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLI 629

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI-----DGLFDCSKVEEACFLLEEVV 439
           +   ++G    A   ++++   G   D  TY  +I     +G+F+     +AC LL + V
Sbjct: 630 NGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFN-----DACLLLYKGV 684

Query: 440 NKGL 443
           + G 
Sbjct: 685 DSGF 688



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 138/299 (46%), Gaps = 15/299 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTLEEMIQMGHA- 231
           +P++   N ++  LC+ G +  A  +  R +      +A TY  L M  L  M Q+  A 
Sbjct: 272 EPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYL-MHGLCRMGQVDEAR 330

Query: 232 --------PDNFTYNTAIDTFCKARMVTEAADL-FEFMRTKGSTISSPTAKTYAIMIVAL 282
                   P+   YNT I  +  +    EA DL +  M   G     P A T+ IMI  L
Sbjct: 331 ALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGY---EPDAYTFNIMIDGL 387

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V+   +     LL  M+     P+V TY  ++ G C  G++EEA + +  M  KG   + 
Sbjct: 388 VKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNT 447

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V YNC +  LC + N +EAL+L+G M   GC P + T+N LI+   +  + + A   +H+
Sbjct: 448 VGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHD 507

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           M   G   +  TY  ++        +++A  L++E++ +G  L    ++  +  L   G
Sbjct: 508 MFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTG 566



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 166/404 (41%), Gaps = 57/404 (14%)

Query: 60  DNSNAYDNMEKALD------SLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAH 113
           DN   ++ + K  D      SL +   +   +  L     +   +   F  AG Q  Y+H
Sbjct: 38  DNETEWERLLKPFDLKQLRRSLSLTPISPFQLCKLLELPLDIPTSMELFQRAGAQKGYSH 97

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173
              A  L+ID L +       F+++  +L  MK    +F    + ++I+K Y  K  +  
Sbjct: 98  TFDACYLLIDKLGAVG----DFKVIEKLLKQMKDEGLLFKE-SLFILIMKHYG-KAGLPG 151

Query: 174 Q---------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG 218
           Q               P   + N++LD L         +  C RV     PN        
Sbjct: 152 QATRLLLDMWGVYSCDPTFKSYNVVLDIL--------VDGDCPRVA----PN-------- 191

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                +M+  G +P  +T+   +   C    V  A  L   M   G     P +  Y  +
Sbjct: 192 --VFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCV---PNSVIYQTL 246

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I AL +N+R+ E   LL  M    C PDV T+ +V+ G+C AG++ EA K L+ M  +G+
Sbjct: 247 IHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGF 306

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D +TY   +  LC     DEA  L  ++      P+   YN LIS Y   G  + A +
Sbjct: 307 STDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKD 362

Query: 399 -TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             ++ M   G   D  T+ +MIDGL     +  A  LL E+V K
Sbjct: 363 LLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAK 406



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 16/237 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L+ + E      +P+I   N L++ LCK   ++ A ++   +    V  N  TYN L   
Sbjct: 467 LQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHA 526

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      + ++EM+  G   DN TYN  I   CK   V +   LFE M  KG    
Sbjct: 527 FLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIF-- 584

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            PT  +  I+I  L +  ++ +    L  MI+ G  PD+ TY  ++ G+C  G V+EA  
Sbjct: 585 -PTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASN 643

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
              ++ ++G  PD +TYN  +   C     ++A  L  + ++ G  P+  T+++LI+
Sbjct: 644 LFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P   +Y  VL+ +        A     +M ++G  P + T+   +K LC     D A 
Sbjct: 166 CDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSAC 225

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L   M + GC P+   Y  LI    E      A +   +M    C  DV T+  +I GL
Sbjct: 226 SLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGL 285

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL----GAIHKLSDHMRKFYN 478
               ++ EA  LL+ ++ +G       +   +  L  +G +      ++K+ +     YN
Sbjct: 286 CRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYN 345

Query: 479 PVIARRLA 486
            +I+  +A
Sbjct: 346 TLISGYVA 353



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 1/181 (0%)

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM-GNKGYPPDIVTYNCFLKVL 352
           LL  M + G L   S +  +++    AG   +A + L +M G     P   +YN  L +L
Sbjct: 121 LLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDIL 180

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
            D      A  ++  M+  G  P+V T+ +++     + E D A     +M K GC  + 
Sbjct: 181 VDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNS 240

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
             Y  +I  L + ++V EA  LLE++     +   + F+  +  L   G +    KL D 
Sbjct: 241 VIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDR 300

Query: 473 M 473
           M
Sbjct: 301 M 301


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 140/302 (46%), Gaps = 20/302 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN-------ILG-----MQT 221
           P     N L++ L +   + YA  +   + +N   PN  TYN       ILG     M  
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +  M+Q GH+ +  TYNT I  +C +   T A  + + MR  G     P   +Y  +I  
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC---KPDEWSYTELICG 504

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME  F L   M++ G  P+  TY  +++G C   K++ A   LE M   G  P+
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  +  L    N   A  L   MIE G +P+V TY  +I    + G    A E ++
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRK-FDSYLMQL 457
           +M ++GC  ++ TY  +I  L    KVEEA  L  E+   GL   ++ Y K  ++Y+M  
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 458 SV 459
            V
Sbjct: 685 KV 686



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN--ILG 218
           L+ + +  K   +P     + L++ LC  G V+ A + I + + + + P A+T    I+ 
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 219 M----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           +          +   +M   G  P+ +TY   I   C + ++  A  LF  M   G    
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVF-- 387

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  LV+N R++  F +L  M  +GC P++ TY E+++G C+ G  ++A  
Sbjct: 388 -PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            +  M  +G+  ++VTYN  +K  CD+ N   ALR+   M + GC P   +Y  LI  + 
Sbjct: 447 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 506

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           ++ + + AF  ++EM   G   +  TY  +IDG     K++ A  LLE +   G +
Sbjct: 507 KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 25/314 (7%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           ++ +Y   +    QP +   N +++ALCK G V  AETI K+V                 
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-------------- 244

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM     +PD FTY + I   C+   +  A  +F  M  +G     P   TY+ +I 
Sbjct: 245 ---EM-----SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC---EPNTVTYSTLIN 293

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + R+ E F L+  MI  G LP   T    +  +C  G  E+A++   +M NKG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY   +  LC +     A+ L+ RM   G +P+  TYN LI++  E      AF   
Sbjct: 354 NVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M + GC+ ++ TY  MI G       ++A  ++  ++ +G       +++ +      
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 461 GDLGAIHKLSDHMR 474
           G+  +  ++ D MR
Sbjct: 474 GNTTSALRILDLMR 487



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 14/263 (5%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGM 219
           I+K Y +     T   +  L+L+ D  CK     Y E IC   K +K++     +N    
Sbjct: 466 IIKGYCDS--GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN---- 519

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM+  G  P+  TY   ID +CK   +  A  L E M+  G     P  +TY ++I
Sbjct: 520 ----EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC---RPNVQTYNVLI 572

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L + +       L   MI  G  P+V TY  +++G+C  G    A +   +M  +G  
Sbjct: 573 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 632

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++TY+  ++ L      +EA  L+  +   G  P   TY  +I  Y   G+ + AF  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 400 WHEMDKRGCAQDVDTYCVMIDGL 422
              M K GC   + TY V+I GL
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 43/315 (13%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-----------GMQTL-EEMIQMG 229
           L+D  CK   +D A ++ + +K +  +PN  TYN+L           G + L + MI+ G
Sbjct: 536 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 595

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY   ID  CK    + A ++F  M  +G     P   TY+ +I AL Q  ++E
Sbjct: 596 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL---PNLLTYSSLIRALGQEGKVE 652

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +L   +   G +PD  TY +++E   ++GKVE A+ FL  M   G  P + TY   +
Sbjct: 653 EAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI 712

Query: 350 K------VLCDNK------------------NGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           K      +L D +                  + D    +  ++ E+    SVQ  N L+S
Sbjct: 713 KGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
                G    A E    M  +G   D + Y  ++  L     V+ A  + + +  +G ++
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 446 ---PYRKFDSYLMQL 457
               Y++    L QL
Sbjct: 833 HLNGYKELICALCQL 847



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 117/322 (36%), Gaps = 75/322 (23%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNI------------LGMQ 220
           +P +   N+L+  L K      AE +CK  ++  + PN  TY              L ++
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI+ G  P+  TY++ I    +   V EA +LF  +   G     P   TY  MI 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI---PDEITYVKMIE 678

Query: 281 ALVQNDRMEECFSLLGHMINSGC---------------------------LPDV------ 307
           A + + ++E  F+ LG MI +GC                           LPDV      
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 738

Query: 308 --------------------------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                                          ++  +  AG+  EA + L  M ++G  PD
Sbjct: 739 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  L  L   +N D A+ ++  M   GC   +  Y  LI    +L     A  T+ 
Sbjct: 799 QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFE 858

Query: 402 EMDKRGCAQDVDTYCVMIDGLF 423
            M  R    D     V+IDGL 
Sbjct: 859 NMLMRTWNPDDVVQAVLIDGLL 880



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +    + M    S L  +  SG    +  Y  +L  +   G           M ++G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+++ YN  +  LC + N  +A  +  ++ E    P   TY  +I  +    + D A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +++M K GC  +  TY  +I+GL D  +V EA  L+ E++  G+
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI 316


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 136/271 (50%), Gaps = 15/271 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+DA  K G++D A  I  +++ + V P+A TY  +             M    +MI 
Sbjct: 406 NILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIA 465

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           MG  PD   YN+ I  FC    + +A +L   M ++G  I  P    +  +I +L +  R
Sbjct: 466 MGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRG--IPRPNTVFFNSIINSLCKEGR 523

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   +   +I+ G  PDV T+  +++G  L GK+E+A+  L+ M + G  PD+VTY+ 
Sbjct: 524 VVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSA 583

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L   C N   D+ L L+  M+  G  P+  TY +++   F  G   GA +  HEM + G
Sbjct: 584 LLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
              D+ T  +++ GL   +  +EA  L +++
Sbjct: 644 TTMDISTCGIILGGLCRNNCDDEAIALFKKL 674



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 29/337 (8%)

Query: 170 KVKTQPEINALNLLLDALCKCG----LVDYAETICKRVKNKVKPNANTYNIL-------- 217
           ++  +P+  + + +L +LC+       +D   T+ K+      PN  +YN +        
Sbjct: 183 ELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKK-SGGCSPNVVSYNTVIHGFFREG 241

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                     EM+Q G  PD  TY++ ID  CKAR + +A  +   M + G     P   
Sbjct: 242 EVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGF---EPDKV 298

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  MI       + +E   +   M   G +PD+ T    +  +C  GK +EA +F + M
Sbjct: 299 TYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSM 358

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG+ PD+VTY+  L          + L L+  M   G       YN+LI  Y + G  
Sbjct: 359 AAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMM 418

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A   + +M +RG   D  TY  +I       ++ +A     +++  GLK     ++S 
Sbjct: 419 DEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSL 478

Query: 454 LMQLSVIGDLGAIHKLSDHMRK---------FYNPVI 481
           +    + G+L    +L   M           F+N +I
Sbjct: 479 IQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSII 515



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 148/333 (44%), Gaps = 26/333 (7%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETIC--KRVKNKVKPNANTYNIL--------- 217
           +K   + ++   N+LL  LC     D A  +   +  +  V+P+  +Y+ +         
Sbjct: 146 LKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSR 205

Query: 218 ---GMQTLEEMIQM--GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
               +  L  M++   G +P+  +YNT I  F +   V++A +LF  M  +G     P  
Sbjct: 206 SQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVV---PDV 262

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY+  I AL +   M++   +L  MI++G  PD  TY  ++ G  + G+ +E      E
Sbjct: 263 VTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFRE 322

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +G  PDI T N ++  LC +    EA   +  M   G  P + TY++L+  Y   G 
Sbjct: 323 MTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGY 382

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
                  ++ M+  G   D   Y ++ID       ++EA  +  ++  +G+      + +
Sbjct: 383 VVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGT 442

Query: 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485
            +   S +G      +L+D M KF N +IA  L
Sbjct: 443 VIAAFSRMG------RLADAMDKF-NQMIAMGL 468



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 16/285 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P     N ++++LCK G V  A+ I   V +   +P+  T+N L               
Sbjct: 505 RPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFG 564

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+ MI +G  PD  TY+  +D +C+   + +   LF  M +KG     PT  TY I++ 
Sbjct: 565 VLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGV---KPTTITYGIILH 621

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + R      +   MI SG   D+ST   +L G+C     +EA    +++G      
Sbjct: 622 GLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKF 681

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +I   N  +  +   +  +EA  L+  +   G  P+  TY ++I+   + G  + A   +
Sbjct: 682 NIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMF 741

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             M+K GCA        +I  L +  ++ +A   L +V  K + L
Sbjct: 742 SLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISL 786



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 117/299 (39%), Gaps = 51/299 (17%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN-------I 216
           + E ++    P++   +  +DALCK   +D AE + ++ + N  +P+  TYN       I
Sbjct: 250 FHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSI 309

Query: 217 LGM-----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           LG          EM + G  PD FT N+ + + CK     EAA+ F+ M  KG       
Sbjct: 310 LGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHK----- 364

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
                                            PD+ TY  +L G    G V +      
Sbjct: 365 ---------------------------------PDLVTYSVLLHGYAAEGYVVDMLNLFN 391

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M   G   D   YN  +         DEA+ ++ +M E G  P   TY  +I+ +  +G
Sbjct: 392 SMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMG 451

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
               A + +++M   G   D   Y  +I G      + +A  L+ E++++G+  P   F
Sbjct: 452 RLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVF 510



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           LP V TY  +++  C A +    +         G   D++  N  LK LC  K  D+A+ 
Sbjct: 116 LPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVN 175

Query: 364 -LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMID 420
            L  RM E+G  P   +Y+ ++    E      A +  H M K+  GC+ +V +Y  +I 
Sbjct: 176 VLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIH 235

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           G F   +V +AC L  E++ +G+      + SY+
Sbjct: 236 GFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYI 269


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 16/286 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K +P +   N ++D LCK   +D A  + K ++ K ++PN  TY+ L             
Sbjct: 251 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + L +MI+    PD FT++  ID F K   + EA  L++ M  +      P+  TY+ +
Sbjct: 311 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI---DPSIVTYSSL 367

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I     +DR++E   +   M++  C PDV TY  +++G C   +VEE  +   EM  +G 
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             + VTYN  ++ L    + D A  ++  M+  G  P++ TYN L+    + G+ + A  
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +  + +      + TY +MI+G+    KVE+   L   +  KG+K
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 134/290 (46%), Gaps = 25/290 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP++    ++++ LCK G  D A                 +N+L      +M Q    P 
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLA-----------------FNLL-----NKMEQGKLEPG 255

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              YNT ID  CK + + +A +LF+ M TKG     P   TY+ +I  L    R  +   
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASR 312

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  MI     PDV T+  +++     GK+ EA K  +EM  +   P IVTY+  +   C
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            +   DEA +++  M+   C+P V TYN LI  + +    +   E + EM +RG   +  
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           TY ++I GLF     + A  + +E+V+ G+      +++ L  L   G L
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------ 217
           + E +K +  P I   + LL A+ K    D   ++ ++++N   P N  TY+IL      
Sbjct: 69  FGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCR 128

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ P+  T ++ ++ +C ++ ++EA  L + M   G     P 
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY---QPN 185

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G  + A+  L 
Sbjct: 186 TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M      P ++ YN  +  LC  K+ D+AL L+  M   G  P+V TY+ LIS     G
Sbjct: 246 KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 305

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    DV T+  +ID      K+ EA  L +E+V + +
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 126/286 (44%), Gaps = 16/286 (5%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPN 210
           FV    L+   K Y E +K    P I   + L++  C    +D A+ + +  V     P+
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             TYN L            GM+   EM Q G   +  TYN  I    +A     A ++F+
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 455

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M + G     P   TY  ++  L +N ++E+   +  ++  S   P + TY  ++EGMC
Sbjct: 456 EMVSDGV---PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AGKVE+ +     +  KG  PD+V YN  +   C   + +EA  L+  M E G  P+  
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            YN LI      G+ + + E   EM   G A D  T  ++ + L D
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 618



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 30/355 (8%)

Query: 114 EP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY------ 165
           EP  L YN +ID L   K+      L   M     R N   V    L+  L  Y      
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN--VVTYSSLISCLCNYGRWSDA 310

Query: 166 ----TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
               ++ I+ K  P++   + L+DA  K G LV+  +   + VK  + P+  TY+ L   
Sbjct: 311 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING 370

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      Q  E M+     PD  TYNT I  FCK + V E  ++F  M  +G   +
Sbjct: 371 FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           + T   Y I+I  L Q    +    +   M++ G  P++ TY  +L+G+C  GK+E+A  
Sbjct: 431 TVT---YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E +      P I TYN  ++ +C     ++   L+  +   G  P V  YN +IS + 
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             G  + A   + EM + G   +   Y  +I         E +  L++E+ + G 
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+I+I    +  ++    ++LG M+  G  P++ T   +L G C + ++ EA   +++M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY P+ VT+N  +  L  +    EA+ L  RM+  GC P + TY ++++   + G+ 
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D AF   ++M++      V  Y  +IDGL     +++A  L +E+  KG++     + S 
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +  L   G    A   LSD + +  NP
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINP 324



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 3/253 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M  +G   +++TY+  I+ FC+   +  A  +   M   G     P   T + ++   
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY---EPNIVTLSSLLNGY 161

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             + R+ E  +L+  M  +G  P+  T+  ++ G+ L  K  EA   ++ M  KG  PD+
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 221

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   + D A  L  +M +    P V  YN +I    +    D A   + E
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   +V TY  +I  L +  +  +A  LL +++ + +      F + +      G 
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341

Query: 463 LGAIHKLSDHMRK 475
           L    KL D M K
Sbjct: 342 LVEAEKLYDEMVK 354



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+  L + G  D A+ I K  V + V PN  TYN L             M   E + +
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P  +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +   
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV---KPDVVAYNTMISGFCRKGS 551

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            EE  +L   M   G LP+   Y  ++      G  E + + ++EM + G+  D  T   
Sbjct: 552 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 611

Query: 348 FLKVLCDNK 356
              +L D +
Sbjct: 612 VTNMLHDGR 620



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++++  +L G M+ S   P +  + ++L  +    K +      E+M N G P +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       AL + G+M+++G  P++ T + L++ Y        A     +M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G   +  T+  +I GLF  +K  EA  L++ +V KG
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 173/425 (40%), Gaps = 66/425 (15%)

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIK 170
           Y+H P  ++ ++  L   K  A   R+V      + R  K   P DV L ++K Y +   
Sbjct: 39  YSHTPYVFHHILKRLFDPKLVAHVSRIV-----ELIRTQKCKCPEDVALTVIKAYAKNSM 93

Query: 171 --------------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
                            QP I + N LL+AL +    D AE+     +   + PN  TYN
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 153

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           IL              + L  M + G +PD F+Y T I++  K   +++A  LF+ M  +
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 264 GSTISS---------------------------------PTAKTYAIMIVALVQNDRMEE 290
           G T                                    P   +Y +MI  L +  + +E
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 273

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
            F +   M  +    D+ TY  ++ G+C +G ++ A +  +EM   G  PD+V YN  L 
Sbjct: 274 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                   +E L L+  M + GC  +V +YN+LI   FE  + D A   W  + ++ C  
Sbjct: 334 GYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCA 392

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           D  TY V++ GL     + +A  +LEE  N    L    + S +  L   G L  +  + 
Sbjct: 393 DSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 471 DHMRK 475
           D M K
Sbjct: 453 DQMTK 457



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 170/384 (44%), Gaps = 41/384 (10%)

Query: 89  QRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM------- 141
           ++ QF++      +MW   +  ++ +  +Y  +I+ L+   Y +   +L   M       
Sbjct: 161 RKKQFDKAKELLNWMW---EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTP 217

Query: 142 --------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193
                   +D   +   +    ++   +LK  +        P I + N++++ LCKCG  
Sbjct: 218 DVACYNILIDGFFKKGDILNASEIWERLLKGPS------VYPNIPSYNVMINGLCKCGKF 271

Query: 194 DYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
           D +  I  R+K N+   +  TY+ L              +  +EM + G +PD   YNT 
Sbjct: 272 DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTM 331

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ++ + +A  + E  +L++ M  +G      T  +Y I+I  L +N +++E  S+   +  
Sbjct: 332 LNGYLRAGRIEECLELWKVMEKEGCR----TVVSYNILIRGLFENAKVDEAISIWELLPE 387

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
             C  D  TY  ++ G+C  G + +A   LEE  N     D   Y+  +  LC     DE
Sbjct: 388 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDE 447

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
              +  +M + GC P+    N +I+ +    + + A   +  M  +GC   V TY  +I+
Sbjct: 448 VAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLIN 507

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           GL    +  EA  L++E+++KG K
Sbjct: 508 GLSKAERFSEAYALVKEMLHKGWK 531



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 10/272 (3%)

Query: 212 NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           N Y    +  LEE        D F Y++ I+  C+   + E A + + M   G     P 
Sbjct: 407 NGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGC---KPN 463

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
                 +I   V+  ++E+     G+M++ GC P V TY  ++ G+  A +  EAY  ++
Sbjct: 464 PHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK 523

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM +KG+ P+++TY+  +  LC  K  D AL L+ + +E G  P V+ +N++I      G
Sbjct: 524 EMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + + A + + EM +R C  ++ T+  +++G +     E A  + + ++  G   P     
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYG---PQPDII 640

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483
           SY + L     L + H++SD +  F N  + R
Sbjct: 641 SYNITLK---GLCSCHRISDAV-GFLNDAVDR 668



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 139/276 (50%), Gaps = 18/276 (6%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM--------------QTLEEMIQ 227
           +L+  LCK G ++ A +I +  +N  + + +T+    M                L++M +
Sbjct: 399 VLVHGLCKNGYLNKALSILEEAENG-RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK 457

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  P+    N  I+ F +A  + +A   F  M +KG     PT  TY  +I  L + +R
Sbjct: 458 HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCF---PTVVTYNTLINGLSKAER 514

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             E ++L+  M++ G  P++ TY  ++ G+C   K++ A     +   KG+ PD+  +N 
Sbjct: 515 FSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNI 574

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC +   ++AL+LY  M +  C P++ T+N L+  ++++ + + A + W  + + G
Sbjct: 575 IIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYG 634

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              D+ +Y + + GL  C ++ +A   L + V++G+
Sbjct: 635 PQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGV 670



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 7/241 (2%)

Query: 201 KRVKNKVKPNANTYNILGM-QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
           KRV   +K   N ++ L +  ++       H P  + ++  +      ++V   + + E 
Sbjct: 11  KRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTP--YVFHHILKRLFDPKLVAHVSRIVEL 68

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMC 318
           +RT+        A T   +I A  +N   ++   +   M    GC P + +Y  +L  + 
Sbjct: 69  IRTQKCKCPEDVALT---VIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALI 125

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            + K +EA  F       G  P++ TYN  +K+ C  K  D+A  L   M E G  P V 
Sbjct: 126 ESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVF 185

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           +Y  LI+   + G    A + + EM +RG   DV  Y ++IDG F    +  A  + E +
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 439 V 439
           +
Sbjct: 246 L 246



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 51/261 (19%)

Query: 179 ALNLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
           A + +++ LC+ G +D  A  + +  K+  KPN +  N +             ++    M
Sbjct: 431 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNM 490

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G  P   TYNT I+   KA   +EA  L + M  KG     P   TY++++  L Q 
Sbjct: 491 VSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW---KPNMITYSLLMNGLCQG 547

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--------- 336
            +++   +L    +  G  PDV  +  ++ G+C +GKVE+A +   EM  +         
Sbjct: 548 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTH 607

Query: 337 --------------------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
                                     G  PDI++YN  LK LC      +A+      ++
Sbjct: 608 NTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVD 667

Query: 371 VGCWPSVQTYNMLISMYFELG 391
            G  P+  T+N+L+    + G
Sbjct: 668 RGVLPTAITWNILVRAVLDNG 688


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 140/302 (46%), Gaps = 20/302 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN-------ILG-----MQT 221
           P     N L++ L +   + YA  +   + +N   PN  TYN       ILG     M  
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +  M+Q GH+ +  TYNT I  +C +   T A  + + MR  G     P   +Y  +I  
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC---KPDEWSYTELICG 504

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME  F L   M++ G  P+  TY  +++G C   K++ A   LE M   G  P+
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  +  L    N   A  L   MIE G +P+V TY  +I    + G    A E ++
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRK-FDSYLMQL 457
           +M ++GC  ++ TY  +I  L    KVEEA  L  E+   GL   ++ Y K  ++Y+M  
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 458 SV 459
            V
Sbjct: 685 KV 686



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN--ILG 218
           L+ + +  K   +P     + L++ LC  G V+ A + I + + + + P A+T    I+ 
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 219 M----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           +          +   +M   G  P+ +TY   I   C + ++  A  LF  M   G    
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF-- 387

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  LV+N R++  F +L  M  +GC P++ TY E+++G C+ G  ++A  
Sbjct: 388 -PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            +  M  +G+  ++VTYN  +K  CD+ N   ALR+   M + GC P   +Y  LI  + 
Sbjct: 447 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 506

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           ++ + + AF  ++EM   G   +  TY  +IDG     K++ A  LLE +   G +
Sbjct: 507 KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 25/314 (7%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           ++ +Y   +    QP +   N +++ALCK G V  AETI K+V                 
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-------------- 244

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM     +PD FTY + I   C+   +  A  +F  M  +G     P   TY+ +I 
Sbjct: 245 ---EM-----SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC---EPNTVTYSTLIN 293

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + R+ E F L+  MI  G LP   T    +  +C  G  E+A++   +M NKG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY   +  LC +     A+ L+ RM   G +P+  TYN LI++  E      AF   
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M + GC+ ++ TY  MI G       ++A  ++  ++ +G       +++ +      
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 461 GDLGAIHKLSDHMR 474
           G+  +  ++ D MR
Sbjct: 474 GNTTSALRILDLMR 487



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 14/263 (5%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGM 219
           I+K Y +     T   +  L+L+ D  CK     Y E IC   K +K++     +N    
Sbjct: 466 IIKGYCDS--GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN---- 519

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM+  G  P+  TY   ID +CK   +  A  L E M+  G     P  +TY ++I
Sbjct: 520 ----EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC---RPNVQTYNVLI 572

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L + +       L   MI  G  P+V TY  +++G+C  G    A +   +M  +G  
Sbjct: 573 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 632

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++TY+  ++ L      +EA  L+  +   G  P   TY  +I  Y   G+ + AF  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 400 WHEMDKRGCAQDVDTYCVMIDGL 422
              M K GC   + TY V+I GL
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 43/315 (13%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-----------GMQTL-EEMIQMG 229
           L+D  CK   +D A ++ + +K +  +PN  TYN+L           G + L + MI+ G
Sbjct: 536 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 595

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY   ID  CK    + A ++F  M  +G     P   TY+ +I AL Q  ++E
Sbjct: 596 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL---PNLLTYSSLIRALGQEGKVE 652

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +L   +   G +PD  TY +++E   ++GKVE A+ FL  M   G  P + TY   +
Sbjct: 653 EAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI 712

Query: 350 K------VLCDNK------------------NGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           K      +L D +                  + D    +  ++ E+    SVQ  N L+S
Sbjct: 713 KGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
                G    A E    M  +G   D + Y  ++  L     V+ A  + + +  +G ++
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 446 ---PYRKFDSYLMQL 457
               Y++    L QL
Sbjct: 833 HLNGYKELICALCQL 847



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 117/322 (36%), Gaps = 75/322 (23%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNI------------LGMQ 220
           +P +   N+L+  L K      AE +CK  ++  + PN  TY              L ++
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI+ G  P+  TY++ I    +   V EA +LF  +   G     P   TY  MI 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI---PDEITYVKMIE 678

Query: 281 ALVQNDRMEECFSLLGHMINSGC---------------------------LPDV------ 307
           A + + ++E  F+ LG MI +GC                           LPDV      
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 738

Query: 308 --------------------------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                                          ++  +  AG+  EA + L  M ++G  PD
Sbjct: 739 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  L  L   +N D A+ ++  M   GC   +  Y  LI    +L     A  T+ 
Sbjct: 799 QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFE 858

Query: 402 EMDKRGCAQDVDTYCVMIDGLF 423
            M  R    D     V+IDGL 
Sbjct: 859 NMLMRTWNPDDVVQAVLIDGLL 880



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +    + M    S L  +  SG    +  Y  +L  +   G           M ++G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+++ YN  +  LC + N  +A  +  ++ E    P   TY  +I  +    + D A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +++M K GC  +  TY  +I+GL D  +V EA  L+ E++  G+
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI 316


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 117/469 (24%), Positives = 188/469 (40%), Gaps = 60/469 (12%)

Query: 87  VLQRFQFEEKI--AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTK-YKAKQFRLVCSMLD 143
           VL + + E  I  A  FF    + +++ H PL Y  MI  L   +     Q+ L    L+
Sbjct: 43  VLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLE 102

Query: 144 YMKRNNKVFVPV-------DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
            +  N  +FV V        +    LK +    +   +P +   N +LDAL         
Sbjct: 103 GISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMI 162

Query: 197 ETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDT 243
             I   +K + ++ N  TYN+L              + L EM   G  PD  +Y T + +
Sbjct: 163 NGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSS 222

Query: 244 FCKARMVTEAADL---------------------------FEFMRTKGSTISSPTAKTYA 276
            C+   V EA +L                           FE           P   TY+
Sbjct: 223 MCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYS 282

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L +   +E   ++L  M   GC P+V T+  +++G  + G++ EA      M  +
Sbjct: 283 TVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQE 342

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P+ V YN  +  LC      EA+ +  +M   G +P+  TY+ LI  + + G+  GA
Sbjct: 343 GSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGA 402

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            E W++M   GC  +V  Y  M+D L   S    A  L+E + N         F++++  
Sbjct: 403 SEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKG 462

Query: 457 LSVIGDLGAIHKLSDHMRKF--------YNPVIARRLALNQKRVRISLR 497
           L   G      K+ + MR++        YN V+      N KR R +L+
Sbjct: 463 LCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDG--LFNAKRTREALQ 509



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 148/322 (45%), Gaps = 20/322 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L  +   I+  ++P   A N L+  LC  G +  A ++ +++ +N V PN  TY+ L   
Sbjct: 333 LDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDG 392

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +   +MI  G  P+   Y   +D  C+  M   A  L E M        
Sbjct: 393 FAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNC--- 449

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   T+   I  L  + + E    +L  M   GC P+V+TY EVL+G+  A +  EA +
Sbjct: 450 PPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQ 509

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            + E+       ++VTYN  L   C       AL++ G+++  G  P   TYN +I  Y 
Sbjct: 510 IVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYC 569

Query: 389 ELGEPDGAFETWHEMDKRGCA-QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           + GE   A +    + K+G    DV TY  ++ G+ +   V+EA   L++++N+G+  P 
Sbjct: 570 KQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGI-CPN 628

Query: 448 RKFDSYLMQ--LSVIGDLGAIH 467
           R   + L++   S +G LG IH
Sbjct: 629 RATWNALVRGLFSKLGHLGPIH 650



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 3/222 (1%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           + +  L +M   G +P+  T+ + +  +     + EA DL+  M  +GS    P    Y 
Sbjct: 296 MALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGS---EPNTVAYN 352

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L    +M E  S+   M  +G  P+ +TY  +++G   AG +  A +   +M   
Sbjct: 353 TLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITN 412

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P++V Y C + VLC N   + AL L   M    C P+  T+N  I      G+ + A
Sbjct: 413 GCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWA 472

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +  ++M + GCA +V TY  ++DGLF+  +  EA  ++ E+
Sbjct: 473 MKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEI 514



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 145/350 (41%), Gaps = 27/350 (7%)

Query: 150 KVFVPVDVLLM-----------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-E 197
           K FVPV   L+           + + + E       P++   + +++ L + G V+ A  
Sbjct: 240 KSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALA 299

Query: 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
            + K       PN +T+  L             +     MIQ G  P+   YNT I   C
Sbjct: 300 VLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLC 359

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
               + EA  + + M   G     P   TY+ +I    +   +     +   MI +GCLP
Sbjct: 360 SYGKMVEAVSVSQKMERNGVF---PNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLP 416

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V  Y  +++ +C       A   +E M N   PP+ +T+N F+K LC +   + A+++ 
Sbjct: 417 NVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVL 476

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            +M + GC P+V TYN ++   F       A +   E+++     ++ TY  ++ G    
Sbjct: 477 NQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHA 536

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              + A  +  +++  G K     +++ +      G++    +L D + K
Sbjct: 537 GMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTK 586


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 16/288 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E I+ +    +   +++++ LCK G    A  + + +K     P+  TYN +      
Sbjct: 217 YKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCK 276

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L+EM+     P+  T+N  ID FC+   VT A  +FE M+ +G     P 
Sbjct: 277 AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL---QPN 333

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L  N +++E   L   M   G  P+V TY  ++ G C    ++EA + L+
Sbjct: 334 VVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           ++G +G  P+++T+N  +         D+A  L   M++ G  P+V TYN LI  +   G
Sbjct: 394 DIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREG 453

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
               A +   EM+  G   D+ TY +++D L    +  +A  LL+E+ 
Sbjct: 454 NVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMT 501



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 140/297 (47%), Gaps = 53/297 (17%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN---------- 215
           E +  +  P     N+L+D  C+   V  A+ + + ++ + ++PN  TYN          
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 216 ----ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                LG+Q  ++M  MG  P+  TYN  I+ FCK +M+ EA ++ + +  +G    +P 
Sbjct: 349 KLDEALGLQ--DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL---APN 403

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I A  +  RM++ F L   M+++G  P+VSTY  ++ G C  G V+EA K  +
Sbjct: 404 VITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAK 463

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM   G   D+VTYN  +  LC      +A+RL   M                       
Sbjct: 464 EMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTL--------------------- 502

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                      M+K+G   ++ TY V+I G  +  K+EEA  LL E++ KGL +P R
Sbjct: 503 -----------MEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL-IPNR 547



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N +L +L K G +   E++ K  ++ ++  N  T++++                +E+M  
Sbjct: 198 NPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA 257

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G +P   TYNT ID +CKA  + +A  L + M  K      P   T+ I+I    +++ 
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI---HPNEITFNILIDGFCRDEN 314

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +     +   M   G  P+V TY  ++ G+C  GK++EA    ++M   G  P++VTYN 
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNA 374

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C  K   EA  +   + + G  P+V T+N LI  Y + G  D AF     M   G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              +V TY  +I G      V+EA  L +E+   GLK     ++  +  L   G+     
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAV 494

Query: 468 KLSDHM 473
           +L D M
Sbjct: 495 RLLDEM 500


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 140/302 (46%), Gaps = 20/302 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN-------ILG-----MQT 221
           P     N L++ L +   + YA  +   + +N   PN  TYN       ILG     M  
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +  M+Q GH+ +  TYNT I  +C +   T A  + + MR  G     P   +Y  +I  
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC---KPDEWSYTELICG 504

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME  F L   M++ G  P+  TY  +++G C   K++ A   LE M   G  P+
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  +  L    N   A  L   MIE G +P+V TY  +I    + G    A E ++
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRK-FDSYLMQL 457
           +M ++GC  ++ TY  +I  L    KVEEA  L  E+   GL   ++ Y K  ++Y+M  
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 458 SV 459
            V
Sbjct: 685 KV 686



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN--ILG 218
           L+ + +  K   +P     + L++ LC  G V+ A + I + + + + P A+T    I+ 
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 219 M----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           +          +   +M   G  P+ +TY   I   C + ++  A  LF  M   G    
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF-- 387

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  LV+N R++  F +L  M  +GC P++ TY E+++G C+ G  ++A  
Sbjct: 388 -PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            +  M  +G+  ++VTYN  +K  CD+ N   ALR+   M + GC P   +Y  LI  + 
Sbjct: 447 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 506

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           ++ + + AF  ++EM   G   +  TY  +IDG     K++ A  LLE +   G +
Sbjct: 507 KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 25/314 (7%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           ++ +Y   +    QP +   N +++ALCK G V  AETI K+V                 
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE--------------- 243

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM     +PD FTY + I   C+   +  A  +F  M  +G     P   TY+ +I 
Sbjct: 244 --SEM-----SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC---EPNTVTYSTLIN 293

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + R+ E F L+  MI  G LP   T    +  +C  G  E+A++   +M NKG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY   +  LC +     A+ L+ RM   G +P+  TYN LI++  E      AF   
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M + GC+ ++ TY  MI G       ++A  ++  ++ +G       +++ +      
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 461 GDLGAIHKLSDHMR 474
           G+  +  ++ D MR
Sbjct: 474 GNTTSALRILDLMR 487



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 14/263 (5%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGM 219
           I+K Y +     T   +  L+L+ D  CK     Y E IC   K +K++     +N    
Sbjct: 466 IIKGYCDS--GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN---- 519

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM+  G  P+  TY   ID +CK   +  A  L E M+  G     P  +TY ++I
Sbjct: 520 ----EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC---RPNVQTYNVLI 572

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L + +       L   MI  G  P+V TY  +++G+C  G    A +   +M  +G  
Sbjct: 573 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 632

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++TY+  ++ L      +EA  L+  +   G  P   TY  +I  Y   G+ + AF  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 400 WHEMDKRGCAQDVDTYCVMIDGL 422
              M K GC   + TY V+I GL
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 43/315 (13%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-----------GMQTL-EEMIQMG 229
           L+D  CK   +D A ++ + +K +  +PN  TYN+L           G + L + MI+ G
Sbjct: 536 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 595

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY   ID  CK    + A ++F  M  +G     P   TY+ +I AL Q  ++E
Sbjct: 596 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL---PNLLTYSSLIRALGQEGKVE 652

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +L   +   G +PD  TY +++E   ++GKVE A+ FL  M   G  P + TY   +
Sbjct: 653 EAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI 712

Query: 350 K------VLCDNK------------------NGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           K      +L D +                  + D    +  ++ E+    SVQ  N L+S
Sbjct: 713 KGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
                G    A E    M  +G   D + Y  ++  L     V+ A  + + +  +G ++
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 446 ---PYRKFDSYLMQL 457
               Y++    L QL
Sbjct: 833 HLNGYKELICALCQL 847



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 117/322 (36%), Gaps = 75/322 (23%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNI------------LGMQ 220
           +P +   N+L+  L K      AE +CK  ++  + PN  TY              L ++
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI+ G  P+  TY++ I    +   V EA +LF  +   G     P   TY  MI 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI---PDEITYVKMIE 678

Query: 281 ALVQNDRMEECFSLLGHMINSGC---------------------------LPDV------ 307
           A + + ++E  F+ LG MI +GC                           LPDV      
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 738

Query: 308 --------------------------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                                          ++  +  AG+  EA + L  M ++G  PD
Sbjct: 739 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  L  L   +N D A+ ++  M   GC   +  Y  LI    +L     A  T+ 
Sbjct: 799 QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFE 858

Query: 402 EMDKRGCAQDVDTYCVMIDGLF 423
            M  R    D     V+IDGL 
Sbjct: 859 NMLMRTWNPDDVVQAVLIDGLL 880



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +    + M    S L  +  SG    +  Y  +L  +   G           M ++G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+++ YN  +  LC + N  +A  +  ++ E    P   TY  +I  +    + D A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +++M K GC  +  TY  +I+GL D  +V EA  L+ E++  G+
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI 316


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 173/425 (40%), Gaps = 66/425 (15%)

Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIK 170
           Y+H P  ++ ++  L   K  A   R+V      + R  K   P DV L ++K Y +   
Sbjct: 39  YSHTPYVFHHILKRLFDPKLVAHVSRIV-----ELIRTQKCKCPEDVALTVIKAYAKNSM 93

Query: 171 --------------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
                            QP I + N LL+AL +    D AE+     +   + PN  TYN
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 153

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           IL              + L  M + G +PD F+Y T I++  K   +++A  LF+ M  +
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 264 GSTISS---------------------------------PTAKTYAIMIVALVQNDRMEE 290
           G T                                    P   +Y +MI  L +  + +E
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 273

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
            F +   M  +    D+ TY  ++ G+C +G ++ A +  +EM   G  PD+V YN  L 
Sbjct: 274 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                   +E L L+  M + GC  +V +YN+LI   FE  + D A   W  + ++ C  
Sbjct: 334 GYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCA 392

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           D  TY V++ GL     + +A  +LEE  N    L    + S +  L   G L  +  + 
Sbjct: 393 DSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 471 DHMRK 475
           D M K
Sbjct: 453 DQMTK 457



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 170/384 (44%), Gaps = 41/384 (10%)

Query: 89  QRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM------- 141
           ++ QF++      +MW   +  ++ +  +Y  +I+ L+   Y +   +L   M       
Sbjct: 161 RKKQFDKAKELLNWMW---EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTP 217

Query: 142 --------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193
                   +D   +   +    ++   +LK  +        P I + N++++ LCKCG  
Sbjct: 218 DVACYNILIDGFFKKGDILNASEIWERLLKGPS------VYPNIPSYNVMINGLCKCGKF 271

Query: 194 DYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
           D +  I  R+K N+   +  TY+ L              +  +EM + G +PD   YNT 
Sbjct: 272 DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTM 331

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ++ + +A  + E  +L++ M  +G      T  +Y I+I  L +N +++E  S+   +  
Sbjct: 332 LNGYLRAGRIEECLELWKVMEKEGCR----TVVSYNILIRGLFENAKVDEAISIWELLPE 387

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
             C  D  TY  ++ G+C  G + +A   LEE  N     D   Y+  +  LC     DE
Sbjct: 388 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDE 447

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
              +  +M + GC P+    N +I+ +    + + A   +  M  +GC   V TY  +I+
Sbjct: 448 VAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLIN 507

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           GL    +  EA  L++E+++KG K
Sbjct: 508 GLSKAERFSEAYALVKEMLHKGWK 531



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 3/228 (1%)

Query: 212 NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           N Y    +  LEE        D F Y++ I+  C+   + E A + + M   G     P 
Sbjct: 407 NGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGC---KPN 463

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
                 +I   V+  ++E+     G+M++ GC P V TY  ++ G+  A +  EAY  ++
Sbjct: 464 PHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK 523

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM +KG+ P+++TY+  +  LC  K  D AL L+ + +E G  P V+ +N++I      G
Sbjct: 524 EMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           + + A + + EM +R C  ++ T+  +++G +     E A  + + ++
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 631



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 7/241 (2%)

Query: 201 KRVKNKVKPNANTYNILGM-QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
           KRV   +K   N ++ L +  ++       H P  + ++  +      ++V   + + E 
Sbjct: 11  KRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTP--YVFHHILKRLFDPKLVAHVSRIVEL 68

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMC 318
           +RT+        A T   +I A  +N   ++   +   M    GC P + +Y  +L  + 
Sbjct: 69  IRTQKCKCPEDVALT---VIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALI 125

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            + K +EA  F       G  P++ TYN  +K+ C  K  D+A  L   M E G  P V 
Sbjct: 126 ESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVF 185

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           +Y  LI+   + G    A + + EM +RG   DV  Y ++IDG F    +  A  + E +
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 439 V 439
           +
Sbjct: 246 L 246



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 18/217 (8%)

Query: 179 ALNLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
           A + +++ LC+ G +D  A  + +  K+  KPN +  N +             ++    M
Sbjct: 431 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNM 490

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G  P   TYNT I+   KA   +EA  L + M  KG     P   TY++++  L Q 
Sbjct: 491 VSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW---KPNMITYSLLMNGLCQG 547

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +++   +L    +  G  PDV  +  ++ G+C +GKVE+A +   EM  +   P++VT+
Sbjct: 548 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTH 607

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           N  ++     ++ + A +++  +++   W S   Y M
Sbjct: 608 NTLMEGFYKVRDFERASKIWDHILQ--SWSSSNCYYM 642


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 139/290 (47%), Gaps = 19/290 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GMQT---------- 221
           P I   N++++ +C+ G VD A+ I  R+ +   +P+  +Y  +  G+            
Sbjct: 209 PNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVL 268

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+     P+  T++  +  FC+  MV  A  + + M   G T   P      I+I A
Sbjct: 269 FAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCT---PNTTLCNIVINA 325

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +  R+++ +  L +M   GC PD  +Y  VL G+C AG+ E A + L EM  K  PP+
Sbjct: 326 ICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN 385

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N F+ +LC     ++A++L   M E GC   + TYN L+  +   G  D A E ++
Sbjct: 386 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFN 445

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            +    C  +  TY  ++ GL    +++ A  LL  ++ K   L    F+
Sbjct: 446 NLP---CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFN 492



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 149/313 (47%), Gaps = 17/313 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           ++ A N L+   C+ G +D A  +   +   V P+A TY  +             +  L+
Sbjct: 108 DVFAYNTLVAGYCRYGRLDAARRLIASMP--VPPDAYTYTPIIRGLCDRGRVGDALALLD 165

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M+Q G  P   TY   ++  CK+    EA ++ + MR KG T   P   TY ++I  + 
Sbjct: 166 DMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCT---PNIVTYNVIINGMC 222

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R+++   +L  + + G  PD+ +Y  VL+G+C A + ++      EM +K   P+ V
Sbjct: 223 REGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEV 282

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           T++  ++  C     + A+++  +M + GC P+    N++I+   + G  D A++  + M
Sbjct: 283 TFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM 342

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              GC  D  +Y  ++ GL    + E A  LL E+V K        F++++  L   G +
Sbjct: 343 GMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLI 402

Query: 464 GAIHKLSDHMRKF 476
               KL + M ++
Sbjct: 403 EQAIKLIELMPEY 415



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 19/307 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           + E +  K  P     ++L+   C+ G+V+ A  + +++ ++   PN    NI+      
Sbjct: 269 FAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICK 328

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M   G  PD  +Y T +   C+A     A +L   M  K      P 
Sbjct: 329 QGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNC---PPN 385

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+   I  L Q   +E+   L+  M   GC   + TY  ++ G C+ G+V+ A   LE
Sbjct: 386 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSA---LE 442

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
              N    P+ +TY   L  LC  +  D A  L   MI+  C  +  T+N+L+S + + G
Sbjct: 443 LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKG 502

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             + A E  ++M + GC  ++ T+  ++DG+      EEA  LL  +V+KG+ L    + 
Sbjct: 503 FVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYS 562

Query: 452 SYLMQLS 458
           S +  LS
Sbjct: 563 SVVDVLS 569



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 22/316 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANT 213
           V+  + +L+Q ++       P     N++++A+CK G VD A      +      P+  +
Sbjct: 297 VERAIQVLQQMSQH---GCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTIS 353

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y  +              + L EM++    P+  T+NT I   C+  ++ +A  L E M 
Sbjct: 354 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 413

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G ++      TY  ++       R++    L     N  C P+  TY  +L G+C A 
Sbjct: 414 EYGCSVG---IVTYNALVHGFCVQGRVDSALELFN---NLPCEPNTITYTTLLTGLCHAE 467

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +++ A + L  M  K  P + VT+N  +   C     +EA+ L  +M+E GC P++ T+N
Sbjct: 468 RLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFN 527

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+    +    + A E  H +  +G + D  TY  ++D L    + EEA  +L  V + 
Sbjct: 528 TLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDM 587

Query: 442 GLKLPYRKFDSYLMQL 457
           G++     ++  L  L
Sbjct: 588 GMRPKVGMYNKILFAL 603



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 137/312 (43%), Gaps = 42/312 (13%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P+  +   +L  LC+ G  ++A E + + V+    PN  T+N               ++
Sbjct: 348 NPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIK 407

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--------- 271
            +E M + G +    TYN  +  FC    V  A +LF  +  + +TI+  T         
Sbjct: 408 LIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAE 467

Query: 272 --------------------AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
                               A T+ +++    Q   +EE   L+  M+  GC P++ T+ 
Sbjct: 468 RLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFN 527

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +L+G+      EEA + L  + +KG   D +TY+  + VL      +EA+++   + ++
Sbjct: 528 TLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDM 587

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P V  YN ++    +  E D A + +  M   GC  +  TY ++I+GL     ++EA
Sbjct: 588 GMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 647

Query: 432 CFLLEEVVNKGL 443
            ++L E+  KG+
Sbjct: 648 RYVLSELYAKGV 659



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 6/213 (2%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G APD +     I   C+    ++AA +       G+ +       Y  ++    +  R+
Sbjct: 69  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVD---VFAYNTLVAGYCRYGRL 125

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +    L+  M      PD  TY  ++ G+C  G+V +A   L++M  +G  P +VTY   
Sbjct: 126 DAARRLIASMPVP---PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVL 182

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L+ +C +    EA+ +   M   GC P++ TYN++I+     G  D A E  + +   G 
Sbjct: 183 LEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGF 242

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             D+ +Y  ++ GL    + ++   L  E+V+K
Sbjct: 243 QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDK 275



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 32/195 (16%)

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L+  D + E   L+    + G  PDV    +++  +C  G+  +A + L      G P D
Sbjct: 49  LIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVD 108

Query: 342 IVTYNCF--------------------------------LKVLCDNKNGDEALRLYGRMI 369
           +  YN                                  ++ LCD     +AL L   M+
Sbjct: 109 VFAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDML 168

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           + GC PSV TY +L+    +      A     EM  +GC  ++ TY V+I+G+    +V+
Sbjct: 169 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 228

Query: 430 EACFLLEEVVNKGLK 444
           +A  +L  + + G +
Sbjct: 229 DAKEILNRLSSYGFQ 243


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 17/294 (5%)

Query: 167  EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKV-KPNANTY-NILGMQTLE 223
            E ++   +P +     L+D LCK G  + A     K V++   KPN +TY +++G    E
Sbjct: 913  EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKE 972

Query: 224  E-----------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
            +           M + G  P+  TY T I+  CKA     A +L   M  +G     P  
Sbjct: 973  DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFM---PNI 1029

Query: 273  KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             TY   I +L +  R  E + LL    + G   D  TY  +++  C    + +A  F   
Sbjct: 1030 YTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 1089

Query: 333  MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
            M   G+  D+   N  +   C  K   E+ RL+  ++ +G  P+ +TY  +IS Y + G+
Sbjct: 1090 MNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGD 1149

Query: 393  PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             D A + +H M + GC  D  TY  +I GL   S V+EAC L E ++++GL  P
Sbjct: 1150 IDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPP 1203



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 172/389 (44%), Gaps = 26/389 (6%)

Query: 72   LDSLGVPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTK 129
            LD     LT +  + V+     E    +A  FF WA   + + H    Y +  D L +  
Sbjct: 683  LDFDANSLTHEQAITVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANG 742

Query: 130  YKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK 189
               K   ++  ML       ++   V +++ +  Q          P    +N +L+   +
Sbjct: 743  NLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQ-------GLTPSSITMNCVLEIAVE 795

Query: 190  CGLVDYAETICKRVKNK-VKPNANTYNILGM------------QTLEEMIQMGHAPDNFT 236
             GL++YAE +   +  + V P++++Y ++ +            + L  MIQ G  PDN T
Sbjct: 796  LGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNAT 855

Query: 237  YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
                +   C+  +V  A   F  M   G     P    +  +I  L +   +++ F +L 
Sbjct: 856  CTLILTALCENGLVNRAIWYFRKMIDLG---FKPNLINFTSLIDGLCKKGSIKQAFEMLE 912

Query: 297  HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+ +G  P+V T+  +++G+C  G  E+A++ FL+ + +  Y P++ TY   +   C  
Sbjct: 913  EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKE 972

Query: 356  KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
               + A  L+ RM E G +P+V TY  LI+ + + G    A+E  + M   G   ++ TY
Sbjct: 973  DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTY 1032

Query: 416  CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               ID L   S+  EA  LL +  + GL+
Sbjct: 1033 NAAIDSLCKKSRAPEAYELLNKAFSCGLE 1061



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 15/282 (5%)

Query: 175  PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
            P+     L+L ALC+ GLV+ A    +++ +   KPN   +  L              + 
Sbjct: 851  PDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 910

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            LEEM++ G  P+ +T+   ID  CK     +A  LF  ++   S    P   TY  MI  
Sbjct: 911  LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF--LKLVRSDTYKPNVHTYTSMIGG 968

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
              + D++     L   M   G  P+V+TY  ++ G C AG    AY+ +  MG++G+ P+
Sbjct: 969  YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 1028

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            I TYN  +  LC      EA  L  +    G      TY +LI    +  + + A   + 
Sbjct: 1029 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 1088

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M+K G   D+    ++I       K++E+  L + VV+ GL
Sbjct: 1089 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGL 1130



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 118/313 (37%), Gaps = 48/313 (15%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            +P ++    ++   CK   ++ AE +  R+K + + PN NTY  L              +
Sbjct: 956  KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYE 1015

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE---------------------- 258
             +  M   G  P+ +TYN AID+ CK     EA +L                        
Sbjct: 1016 LMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQC 1075

Query: 259  ----------FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                      F      T      +   I+I A  +  +M+E   L   +++ G +P   
Sbjct: 1076 KQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKE 1135

Query: 309  TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            TY  ++   C  G ++ A K+   M   G  PD  TY   +  LC     DEA +LY  M
Sbjct: 1136 TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 1195

Query: 369  IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            I+ G  P   T   L   Y +  +   A      +DK+   + V T   ++  L    KV
Sbjct: 1196 IDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRT---LVRKLCSEKKV 1252

Query: 429  EEACFLLEEVVNK 441
              A    ++++ K
Sbjct: 1253 GVAALFFQKLLEK 1265



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +  F +   + EA  +   M+ +G T SS T      + V L   +  E  F     M  
Sbjct: 755 LRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFD---EMSV 811

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G +PD S+YK ++ G    GK++EA ++L  M  +G+ PD  T    L  LC+N   + 
Sbjct: 812 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 871

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+  + +MI++G  P++  +  LI    + G    AFE   EM + G   +V T+  +ID
Sbjct: 872 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 931

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLP 446
           GL      E+A  L  ++V      P
Sbjct: 932 GLCKRGWTEKAFRLFLKLVRSDTYKP 957



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G++ EA   + +M N+G  P  +T NC L++  +    + A  ++  M   G  P   +Y
Sbjct: 762 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 821

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            +++   F  G+   A      M +RG   D  T  +++  L +   V  A +   ++++
Sbjct: 822 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 881

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
            G K     F S +  L   G +  A   L + +R  + P +    AL
Sbjct: 882 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTAL 929


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 4/244 (1%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D   YNT I   CKAR    A +L   M   G   S     TY  +I  L ++  ++   
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDAS---VVTYTTLIDGLCKSGDLDAAQ 65

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           +LL  M ++GC P+V TY  +++G+C A +  +A + ++ M   G  PD+VTYN  +  L
Sbjct: 66  ALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGL 125

Query: 353 C-DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           C  N+  D  L L   MIE G  P V TYN  IS   + G+ D   E   EMD+ G + D
Sbjct: 126 CMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD 185

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           V T+C +I GL   +++++A  + + ++ +G       +   L  LS    L  + ++ +
Sbjct: 186 VVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLE 245

Query: 472 HMRK 475
           HM K
Sbjct: 246 HMVK 249



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 124/280 (44%), Gaps = 26/280 (9%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           L+D LCK G +D A+ +                      L++M   G AP+  TY   ID
Sbjct: 51  LIDGLCKSGDLDAAQAL----------------------LQKMADAGCAPNVVTYTALID 88

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH-MINS 301
             CKAR   +A    + M   G     P   TY  +I  L   +RM++   +L   MI S
Sbjct: 89  GLCKARRPHDAIQTVKRMLRSGC---EPDLVTYNSLIHGLCMANRMDDAGLVLQELMIES 145

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G +PDV TY   + G+C AGK+++  + LEEM   G  PD+VT+   +  LC     D+A
Sbjct: 146 GRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDA 205

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            +++  M+E GC P   TY++++         D   E    M K G      TY  +I  
Sbjct: 206 FQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHA 265

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           L     +E A +  E+ +  G  +     ++++  L   G
Sbjct: 266 LIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSG 305



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++ L  M   G+     TY T ID  CK+  +  A  L + M   G    +P   TY  +
Sbjct: 30  LELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAG---CAPNVVTYTAL 86

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE-MGNKG 337
           I  L +  R  +    +  M+ SGC PD+ TY  ++ G+C+A ++++A   L+E M   G
Sbjct: 87  IDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESG 146

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+VTYN F+  LC     D+ L +   M   G  P V T+  +IS   +    D AF
Sbjct: 147 RIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAF 206

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + +  M +RGC  D  TY +M+D L   ++++    +LE +V  G
Sbjct: 207 QVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 54/325 (16%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR--VKNKVKPNANTYNIL--------- 217
           ++   +P++   N L+  LC    +D A  + +   +++   P+  TYN           
Sbjct: 107 LRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGK 166

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
              G++ LEEM + G +PD  T+ + I   CKA  + +A  +F+ M  +G     P + T
Sbjct: 167 LDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCV---PDSLT 223

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSG-------------------------------- 302
           Y+IM+  L + +R++    +L HM+ SG                                
Sbjct: 224 YSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAM 283

Query: 303 ---CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
              C+ +V T+   +  +C +GK   A   L  M   G  P++++YN  +  LC + N D
Sbjct: 284 EAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVD 343

Query: 360 EALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCV 417
           +A +L  +M++ GC  P V  +N LIS + + G    A +   EM  +  C  DV TY  
Sbjct: 344 DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNT 403

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKG 442
           MIDG      +++A  LLEE+   G
Sbjct: 404 MIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 41/237 (17%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN-----NKVFVPVDVLLMILKQ---- 164
           + L Y++M+D LS    +A +   V  +L++M ++     +  + P+   L+        
Sbjct: 220 DSLTYSIMLDNLS----RANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESA 275

Query: 165 ---YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
              Y + ++     E+   N  + ALC+ G    A+ I                +LGM  
Sbjct: 276 SWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNI----------------LLGM-- 317

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
               I+ G  P+  +YN  ID  CK+  V +A  L   M   G     P    +  +I  
Sbjct: 318 ----IESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCC--KPDVIFFNTLISG 371

Query: 282 LVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
             +  R+ +   LL  M   + C+PDV TY  +++G    G +++A   LEEM   G
Sbjct: 372 FCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M ++ +  D   YN  +  LC  +    AL L   M   G   SV TY  LI    + G+
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A     +M   GCA +V TY  +IDGL    +  +A   ++ ++  G +     ++S
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 453 YLMQL 457
            +  L
Sbjct: 121 LIHGL 125


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 17/302 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L+   E +     P++   N LL+ LCK   +  AE +   ++ + V P+  T+  L   
Sbjct: 36  LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 95

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q  + M+     PD  TYNT ID  C+   + +A DL++ M ++     
Sbjct: 96  YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIF-- 153

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+I+I +  +  ++E+ F  L  MIN G LP++ TY  +++G C +G V +  K
Sbjct: 154 -PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 212

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           FL++M      PD++TYN  +          +A +L   M +    P V TYNMLI+ + 
Sbjct: 213 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 272

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G    A   + +M  +G   D  TY  MI+G       +EA  L +E++ +G   P  
Sbjct: 273 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA-PDD 331

Query: 449 KF 450
           KF
Sbjct: 332 KF 333



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 38/290 (13%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++  +EM+  G  PD  TYNT ++  CK R + +A  L   MR +G     P   T+  +
Sbjct: 36  LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV---PPDLCTFTTL 92

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG----------------- 321
           I       ++++   L   M+N    PD+ TY  +++GMC  G                 
Sbjct: 93  IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 152

Query: 322 ------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
                             +VE+A+ FL+EM NKG  P+I+TYN  +K  C + N  +  +
Sbjct: 153 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 212

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
              +M+     P + TYN LI  Y +  +   AF+  + M+K     DV TY ++I+G  
Sbjct: 213 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 272

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
               V+EA ++ E++  KG++     + S +      G+     +L D M
Sbjct: 273 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 322



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 1/177 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    Y ++I    +   M +   +   M+  GCLPDV TY  +L G+C   ++ +A   
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L EM  +G PPD+ T+   +   C     D+AL+L+  M+     P + TYN LI     
Sbjct: 74  LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 133

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            G+ D A + W +M  R    +  TY ++ID   +  +VE+A   L+E++NKG+ LP
Sbjct: 134 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI-LP 189



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           M  L EM   G  PD   Y   I  FC+A ++++A  + + M   G     P   TY  +
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCL---PDVVTYNTL 57

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L +  R+ +   LL  M   G  PD+ T+  ++ G C+ GK+++A +  + M N+  
Sbjct: 58  LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 117

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PDIVTYN  +  +C   + D+A  L+  M     +P+  TY++LI  + E G+ + AF 
Sbjct: 118 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 177

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC-FLLEEVVNK 441
              EM  +G   ++ TY  +I G      V +   FL + +VNK
Sbjct: 178 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 221



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%)

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           +L EM   G  PD V Y   +   C      +ALR+   M+  GC P V TYN L++   
Sbjct: 3   YLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 62

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           +      A    +EM +RG   D+ T+  +I G     K+++A  L + ++N+ L+    
Sbjct: 63  KERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIV 122

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMR 474
            +++ +  +   GDL   + L D M 
Sbjct: 123 TYNTLIDGMCRQGDLDKANDLWDDMH 148


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 176/427 (41%), Gaps = 64/427 (14%)

Query: 83  SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
           +VVG + R   +     R F W G Q  Y H    YN  +D L+    KA   +L     
Sbjct: 6   TVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALA----KANAGQLAYEKF 61

Query: 143 DYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR 202
             M+R                           P+    +++L  LCK G +D A+ +  +
Sbjct: 62  QQMQRRG-----------------------YPPDDFTYSIVLRGLCKAGELDKAKELLGQ 98

Query: 203 VK-NKVKPNANTYNIL------------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKAR 248
           ++ + VK N  TY+++             ++  + M   G   PD  T+N+ +   C   
Sbjct: 99  LRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGE 158

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            ++EA  LFE+M   G     P   +Y+ ++  L +  R++E   L   M+   C+PD+ 
Sbjct: 159 RMSEAFVLFEYMAKAG---CEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLV 215

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG---------- 358
            Y   + G+C A +V EA     +M  KG   D V ++  + +LC   +           
Sbjct: 216 AYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEH 275

Query: 359 -------DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE-PDGA--FETWHEMDKRGC 408
                  DEA + +  MI     PS + +N LI    +    PDG   F+    M +  C
Sbjct: 276 LCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYC 335

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             +++TY +M+D L    +++EA  L+ E+ N GL      + + +  L  +G L     
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACD 395

Query: 469 LSDHMRK 475
           L + M K
Sbjct: 396 LLEEMSK 402



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 154/359 (42%), Gaps = 53/359 (14%)

Query: 179 ALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN---------------ILGMQTL 222
           A N +++ LC+ G++D A +T  + +     P+A  +N               +L  Q +
Sbjct: 268 AQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM 327

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M +    P+  TYN  +D  CKA+ + EA +L   M   G    SP   TY+ ++  L
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL---SPDVVTYSALVDGL 384

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  +++    LL  M   G  PD  T   +L  +  AGKV+ A   LE M  +G  PD+
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDL 444

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  L  LC     DEA+    +M+   C P V +Y ++I+     G+  GA   + E
Sbjct: 445 VTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQE 504

Query: 403 MDKRG--------------------------------CAQDVDTYCVMIDGLFDCSKVEE 430
           M KRG                                C  D   + +++DGL    K E+
Sbjct: 505 MVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAED 564

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489
           AC ++E + + G       + S +  L  +G +    +L D   + +  V   RL++ +
Sbjct: 565 ACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASETHTSV--ERLSMEK 621



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 132/321 (41%), Gaps = 55/321 (17%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           YN+M+D L   K   +   LV  M +Y                              P++
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANY---------------------------GLSPDV 374

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237
              + L+D LCK G +D A                         LEEM + G  PD+FT 
Sbjct: 375 VTYSALVDGLCKLGKLDRA----------------------CDLLEEMSKEGVFPDSFTD 412

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
            + ++   KA  V  A    E M+ +GST   P   TY  ++  L +  R++E  + L  
Sbjct: 413 ASILNALSKAGKVDYALSHLETMKARGST---PDLVTYNTLLDGLCKAGRIDEAITFLAK 469

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M+ + C PDV +Y  ++  +C +G+   A+   +EM  +G  PD V Y+  L  L  N  
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D AL L    +   C P    + M++    + G+ + A E    M   G   D  TY  
Sbjct: 530 EDLALELLKTSL---CKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYIS 586

Query: 418 MIDGLFDCSKVEEACFLLEEV 438
           ++ GL    KV++A  L+++ 
Sbjct: 587 VVSGLRKLGKVDKARQLVDDA 607


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 155/359 (43%), Gaps = 38/359 (10%)

Query: 103 MWAGHQDNYAHEP----LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
           MW  + D  A       + Y  +ID         K FRL   M++      K+F  V + 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE-----KKIFPTVVIY 231

Query: 159 LMILKQYTEKIKVKTQ-------------PEINALNLLLDALCKCGLVDYA-ETICKRVK 204
            ++++    + ++                P +   N ++D  CK   V  A E   + + 
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291

Query: 205 NKVKPNANTYNIL--GMQTLEEMIQ----------MGHAPDNFTYNTAIDTFCKARMVTE 252
           + + PN  T+ IL  G+   +EM+            G  P+ F YN  ID +CKA  ++E
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE 351

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  L   +         P   TY+I+I  L   DRMEE   LL  M   G LP+  TY  
Sbjct: 352 ALSLHSEIEKHEIL---PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++G C  G +E+A +   +M  KG  P+I+T++  +   C     + A+ LY  M+  G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             P V  Y  LI  +F+ G    AF    EM + G   +V T   +IDGL    ++ +A
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 161/376 (42%), Gaps = 54/376 (14%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAK----------------QFRLVCSM 141
           A   F     + + A  P  Y+ +I +L+  K  AK                + R+ CS+
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 142 LDYMKR-NNKVFVPVDVLLMILKQYTEK----------IKVKTQPEINALNLLLDALCKC 190
            + + R  +  F P +V  +++  ++E            K+   P + A N++LD L K 
Sbjct: 113 FNVLSRLESSKFTP-NVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKK 171

Query: 191 GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           G  D                   + + G     +M+  G +P+  TY T ID  C+    
Sbjct: 172 GRFD-----------------TMWKVYG-----DMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A  LF+ M  K      PT   Y I+I  L    R+ E  S+   M NSG LP++ TY
Sbjct: 210 LKAFRLFDEMIEKKIF---PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTY 266

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G C    V++A +  +EM   G  P++VT+   +  LC       A +    M  
Sbjct: 267 NTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P++  YN LI  Y + G    A     E++K     DV TY ++I GL    ++EE
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386

Query: 431 ACFLLEEVVNKGLKLP 446
           A  LL+E+  KG  LP
Sbjct: 387 ADGLLQEMKKKGF-LP 401



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 138/299 (46%), Gaps = 16/299 (5%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
            L   + + E I+ K  P +    +L+  LC    +  AE++ + ++N  + PN  TYN 
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNT 268

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++  +EM+  G  P+  T+   ID  CK   +  A      M + G
Sbjct: 269 MMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P    Y  +I    +   + E  SL   +     LPDV TY  +++G+C   ++E
Sbjct: 329 VV---PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EA   L+EM  KG+ P+ VTYN  +   C   N ++A+ +  +M E G  P++ T++ LI
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             Y + G+ + A   + EM  +G   DV  Y  +IDG F     +EA  L +E+   GL
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 33/297 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-----GMQTLEE---- 224
           P I   N L+D  CK G +  A ++   + K+++ P+  TY+IL     G+  +EE    
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M + G  P+  TYNT ID +CK   + +A ++   M  KG     P   T++ +I  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI---EPNIITFSTLIDG 447

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME    L   M+  G LPDV  Y  +++G    G  +EA++  +EM   G  P+
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG---------------CWPSVQTYNMLISM 386
           + T +C +  LC +    +A++L+  + + G               C P+   Y  LI  
Sbjct: 508 VFTLSCLIDGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               G    A + + +M   G   DV T  V+I G F    + +   L  +++  G+
Sbjct: 566 LCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGI 622



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 28/238 (11%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL-- 217
           +  Q TEK     +P I   + L+D  CK G ++ A  +  + V   + P+   Y  L  
Sbjct: 425 VCSQMTEK---GIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF---EFMRTKG 264
                       +  +EM + G  P+ FT +  ID  CK   +++A  LF       T G
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTG 541

Query: 265 S-------TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           S       ++ SP    Y  +I  L  + R+ +       M  SG  PDV T   +++G 
Sbjct: 542 SKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGH 601

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM--IEVGC 373
             A  + +      ++   G  P+   Y    K   ++     ALR    +  I +GC
Sbjct: 602 FRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGIGC 659


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 144/339 (42%), Gaps = 47/339 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P I  LN LL AL + G++   E++  R+  +   N +TY  L              + L
Sbjct: 41  PPIRCLNTLLMALARHGMLSDMESLAARMPVR---NLHTYTTLINAYCHAGDLPAAKRHL 97

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-------------- 268
             +++ G APD+  Y + +  +C+  +   A  LF  M  +G   +              
Sbjct: 98  SSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGA 157

Query: 269 ------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                             +P +  Y+IM+  L    R  E  +LL   +  G +P+V+ Y
Sbjct: 158 GMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVY 217

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G C  G +E A    + M +KG  P++ TY   +   C +   + A+ LY RMIE
Sbjct: 218 NALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIE 277

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI      G  + AF   H M+  G A +  T  V+ID L    ++EE
Sbjct: 278 AGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEE 337

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           A   L  +V KG+K+    + S +  L   G     H L
Sbjct: 338 AQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNL 376



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           LL  LC  G+V  A  +   +  +   P+++ Y+I+             +  L + +  G
Sbjct: 150 LLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKG 209

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+   YN  ID +C    +  A D+F+ M++KG     P  +TY  +I    ++ ++E
Sbjct: 210 FVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCL---PNVRTYTQLICGFCKSGKVE 266

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               L   MI +G  P+V TY  +++G C  G +E A++ L  M   G  P+  T    +
Sbjct: 267 RAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLI 326

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC +   +EA +  G +++ G   +   Y  +I    + G+ DGA     ++   G  
Sbjct: 327 DALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFV 386

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D   Y  +IDGL   +K+ EA  LL +++  G++
Sbjct: 387 PDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQ 421



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 119/297 (40%), Gaps = 51/297 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P +     L+   CK G V+ A  +  R ++  + PN  TY  L              + 
Sbjct: 247 PNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRL 306

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M   G AP+ +T    ID  CK   + EA      +  KG  ++      Y  MI A
Sbjct: 307 LHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQ---VIYTSMIDA 363

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL----------- 330
           L ++ + +   +L+  +I  G +PD   Y  +++G+C   K+ EA   L           
Sbjct: 364 LCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQAN 423

Query: 331 ------------------------EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                                   + M   G  PD+VTY  F++  C +   ++A  +  
Sbjct: 424 AVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMI 483

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +MI+ G  P++ TYN LI  Y  LG    AF +   M   GC  + ++Y V++  L 
Sbjct: 484 QMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLL 540



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 123/283 (43%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N L+D  C  G ++ A  I K +++K   PN  TY  L             M  
Sbjct: 212 PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVL 271

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              MI+ G AP+  TY T I   C    +  A  L   M   G    +P   T  ++I A
Sbjct: 272 YSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGL---APNEWTCLVLIDA 328

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+EE    LG ++  G   +   Y  +++ +C +GK + A+  ++++  +G+ PD
Sbjct: 329 LCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPD 388

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              Y+  +  LC      EA+ L   MIE G   +   + +LI  +      D       
Sbjct: 389 AHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISD 448

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            M   G   DV TY V I       ++E+A  ++ ++++ G++
Sbjct: 449 RMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVR 491



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 141/363 (38%), Gaps = 70/363 (19%)

Query: 182 LLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL-----------GMQTL-EEMIQM 228
           +L+DALCK G ++ A+  +   V+  +K N   Y  +           G   L +++I  
Sbjct: 324 VLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITE 383

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLF------------------------EFMRTKG 264
           G  PD   Y++ ID  C+   + EA  L                         EF     
Sbjct: 384 GFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSP 443

Query: 265 STIS--------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
             IS         P   TY + I +  Q+ RME+  S++  MI+ G  P+++TY  +++G
Sbjct: 444 KMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKG 503

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL-------------- 362
               G V +A+  L+ M + G  P+  +Y   L +L   KN    L              
Sbjct: 504 YANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLL-KKNSYHDLVADSISLWKIVDMK 562

Query: 363 ---RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
               L   +I++ C  +   Y+  I    ++   + A      M         D Y  MI
Sbjct: 563 VLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMI 622

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK----LSDHMRK 475
           +  +    ++EA   L+ +V +   LP  + +SY   +  + + G+ H       D + K
Sbjct: 623 ECCYRMKLLKEALRFLDSMVKRNY-LP--RLESYRFIICALCEEGSFHTAKSIFGDILSK 679

Query: 476 FYN 478
            YN
Sbjct: 680 EYN 682



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 53/350 (15%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE 176
           A+NLM  I+  T+       +  S++D + R NK+   + +L        + I+   Q  
Sbjct: 373 AHNLMQKII--TEGFVPDAHMYSSLIDGLCRENKLLEAISLL-------NDMIESGVQAN 423

Query: 177 INALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------GMQTLEEM-I 226
                +L+D   +    D  + I  R+    VKP+  TY +          M+  E M I
Sbjct: 424 AVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMI 483

Query: 227 QM---GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           QM   G  P+  TYNT I  +    +V++A    + M   G     P  ++Y +++  L+
Sbjct: 484 QMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGC---KPNDESYTVLLGLLL 540

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM-----------------CLA--GKVE 324
           + +   +   L+   I+   + D+   +E+LE +                 CL+   ++E
Sbjct: 541 KKNSYHD---LVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLE 597

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EA  FL  M +    P    Y C ++     K   EALR    M++    P +++Y  +I
Sbjct: 598 EAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFII 657

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF------DCSKV 428
               E G    A   + ++  +   +D   + ++IDGL       DCS++
Sbjct: 658 CALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRL 707


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+I   N+L+ A   CG++D A  I   +++  VKP+  TY  +             M+ 
Sbjct: 394 PDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEK 453

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G  PD + Y+  I  FC    + +A +L   +   G  +       +  +I  
Sbjct: 454 FNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLD---IVFFGSIINN 510

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  PD   Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 511 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +   C     DE L L+  M++ G  PS   YN++I   FE G    A   +H
Sbjct: 571 VVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFH 630

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A +  TY +++ GLF     +EA FL +E+    +K+
Sbjct: 631 EMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 674



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 139/301 (46%), Gaps = 23/301 (7%)

Query: 164 QYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYN 215
           Q+ E ++V  +       P++ ALN L+ +LCK G +  A  +   +  K + P+  +Y 
Sbjct: 306 QWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYT 365

Query: 216 IL--GMQTLEEMIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           I+  G  T   ++ M          G APD +T+N  I  +    M+ +A  +F  MR  
Sbjct: 366 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH 425

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY  +I AL +  +M++       MI+ G +PD   Y  +++G C  G +
Sbjct: 426 G---VKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +A + + E+ N G   DIV +   +  LC      +A  ++   + VG  P    YNML
Sbjct: 483 LKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNML 542

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  Y  +G+ + A   +  M   G   +V  Y  +++G     +++E   L  E++ KG+
Sbjct: 543 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI 602

Query: 444 K 444
           K
Sbjct: 603 K 603



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 33/304 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH--AP 232
           P++ + N+LL +LC  G    A+ +                      L  M + G   +P
Sbjct: 182 PDVFSYNILLKSLCNQGKSGQADDL----------------------LRMMAEGGTVCSP 219

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D   YNT ID F K   V +A DLF+ M  +G     P   TY+ ++ AL +   M++  
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG---IPPDLVTYSSVVHALCKARAMDKAE 276

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           + L  M+N G LPD  TY  ++ G    G+ +EA +  +EM  +   PD+V  N  +  L
Sbjct: 277 AFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSL 336

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C      EA  ++  M   G  P V +Y ++++ Y   G      + +  M   G A D+
Sbjct: 337 CKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 396

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            T+ V+I    +C  +++A  +  E+ + G+K P+      +  ++VI  L  I K+ D 
Sbjct: 397 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK-PH-----VVTYMTVIAALCRIGKMDDA 450

Query: 473 MRKF 476
           M KF
Sbjct: 451 MEKF 454



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P++   + ++ ALCK   +D AE   +++ NK V P+  TYN L      
Sbjct: 244 FKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 303

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD    NT + + CK   + EA D+F+ M  KG    +P 
Sbjct: 304 TGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ---NPD 360

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  PD+ T+  +++     G +++A     
Sbjct: 361 VFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFN 420

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  P +VTY   +  LC     D+A+  + +MI+ G  P    Y+ LI  +   G
Sbjct: 421 EMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHG 480

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A E   E+   G   D+  +  +I+ L    +V +A  + +  VN GL
Sbjct: 481 SLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGL 532



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   D      +L+G C A
Sbjct: 102 RAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEA 161

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +YN  LK LC+     +A  L   M E G  C P V
Sbjct: 162 KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDV 221

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN +I  +F+ G+ + A + + EM +RG   D+ TY  ++  L     +++A   L +
Sbjct: 222 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ 281

Query: 438 VVNKGLKLP 446
           +VNKG+ LP
Sbjct: 282 MVNKGV-LP 289



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 4/228 (1%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           L +    ++++ G   D    +  +  FC+A+   EA D+      +   +  P   +Y 
Sbjct: 131 LALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCV--PDVFSYN 188

Query: 277 IMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           I++ +L    +  +   LL  M   G  C PDV  Y  V++G    G V +A    +EM 
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            +G PPD+VTY+  +  LC  +  D+A     +M+  G  P   TYN LI  Y   G+  
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWK 308

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            A   + EM ++    DV     ++  L    K++EA  + + +  KG
Sbjct: 309 EAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 16/242 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMG 229
           +++ LCK G V  A+ I     N  + P+A  YN+L             ++  + M+  G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+   Y T ++ +CK   + E   LF  M  KG     P+   Y I+I  L +  R  
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI---KPSTILYNIIIDGLFEAGRTV 623

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
                   M  SG   +  TY  VL G+      +EA    +E+       DI+T N  +
Sbjct: 624 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 683

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             +   +  +EA  L+  +   G  P   TY+++I+   + G  + A + +  M   GC 
Sbjct: 684 AGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCE 743

Query: 410 QD 411
            D
Sbjct: 744 PD 745



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V   P+    N+L+D  C  G ++ A  +    V   ++PN   Y  L          
Sbjct: 528 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI 587

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G+    EM+Q G  P    YN  ID   +A     A   F  M   G  ++  T   Y
Sbjct: 588 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT---Y 644

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I++  L +N   +E   L   +       D+ T   ++ GM    +VEEA      +  
Sbjct: 645 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 704

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P  VTY+  +  L      +EA  ++  M   GC P  +  N ++    +  E   
Sbjct: 705 SGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVR 764

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     ++D+R  + +  T  +++D
Sbjct: 765 AGAYLSKIDERNFSLEHLTAMLLVD 789


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 135/306 (44%), Gaps = 39/306 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
            P++   N L+DAL K G +  A+ +    +K  +KP+  TYN L               
Sbjct: 270 NPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKY 329

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M Q G  P+  TY T ID  CK +MV EA  LFE M+ K      P   TY  +I 
Sbjct: 330 VFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMI---PDIVTYTSLID 386

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +N  +E   +L   M   G  PDV +Y  +L+ +C  G++E A +F + +  KGY  
Sbjct: 387 GLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHL 446

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TYN  +  LC      EA+ L  +M   GC P   T+  +I   FE  E D A +  
Sbjct: 447 NVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKIL 506

Query: 401 HEMDKRGCAQ-----------------------DVDTYCVMIDGLFDCSKVEEACFLLEE 437
            EM  RG  +                       DV TY  ++DG F  ++++ A ++   
Sbjct: 507 REMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYS 566

Query: 438 VVNKGL 443
           +   G+
Sbjct: 567 MAQMGV 572



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P++  LN+L++  C    + +A ++   + K    PNA T N L             +  
Sbjct: 96  PDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYF 155

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++++  G   +  +Y T I+  CK       A L    + +G ++  P    Y  +I +
Sbjct: 156 HDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLR--KLEGHSVK-PDVVMYNTIIHS 212

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +N  + +   L   MI  G  P+V TY  ++ G C+ G ++EA+  L EM  K   PD
Sbjct: 213 LCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPD 272

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + T+N  +  L        A  +   M++    P V TYN LI  YF L +   A   ++
Sbjct: 273 VCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFY 332

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M + G   +V TY  MIDGL     V+EA  L EE+  K +
Sbjct: 333 SMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNM 374



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 40/332 (12%)

Query: 167 EKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------- 217
           E++K K   P+I     L+D LCK   ++ A  +CK++K + ++P+  +Y IL       
Sbjct: 367 EEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKG 426

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  +  + ++  G+  +  TYN  I+  CKA +  EA DL   M  KG     P A
Sbjct: 427 GRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCM---PDA 483

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSG----------------------CL-PDVST 309
            T+  +I AL + D  ++   +L  MI  G                      C+ PDV T
Sbjct: 484 ITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVT 543

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +++G  L  +++ A      M   G  P++  Y   +  LC  K  DEA+ L+  M 
Sbjct: 544 YGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMK 603

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
               +P++ TY  LI    +    + A     EM + G   DV +Y +++DGL    ++E
Sbjct: 604 HKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLE 663

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            A  + + ++ KG  L  + + + + +L   G
Sbjct: 664 GAKEIFQRLLVKGYHLNVQVYTAMINELCKAG 695



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 15/217 (6%)

Query: 207 VKPNANTYNIL--GMQTLEE----------MIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           +KP+  TY  L  G   + E          M QMG  P+   Y   ID  CK + V EA 
Sbjct: 537 IKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAM 596

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            LFE M+ K      P   TY  +I AL +N  +E   +LL  M   G  PDV +Y  +L
Sbjct: 597 SLFEEMKHKNMF---PNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILL 653

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
           +G+C +G++E A +  + +  KGY  ++  Y   +  LC     DEAL L  +M + GC 
Sbjct: 654 DGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCM 713

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           P   T++++I   FE  E D A +   EM  RG  ++
Sbjct: 714 PDAVTFDIIIWALFEKDENDKAEKILXEMIARGLMKE 750



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 125/286 (43%), Gaps = 24/286 (8%)

Query: 174 QPEINALNLLLDALCKCGLVD-----YAETICKRVKNKVKPNANTYNIL----------- 217
           +P++   N ++ +LCK  L+      Y+E I K     + PN  TYN L           
Sbjct: 200 KPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVK----GISPNVVTYNALVYGFCIMGHLK 255

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                L EM      PD  T+NT ID   K   +  A  +   M         P   TY 
Sbjct: 256 EAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMM---KACIKPDVVTYN 312

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I      ++++    +   M  SG  P+V TY  +++G+C    V+EA    EEM  K
Sbjct: 313 SLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYK 372

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              PDIVTY   +  LC N + + A+ L  +M E G  P V +Y +L+    + G  + A
Sbjct: 373 NMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENA 432

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            E +  +  +G   +V TY VMI+GL       EA  L  ++  KG
Sbjct: 433 KEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKG 478



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 40/318 (12%)

Query: 163 KQYTEKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           K++ +++ VK     +   N++++ LCK  L   A  +  +++ K   P+A T+  +   
Sbjct: 433 KEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICA 492

Query: 218 ---------GMQTLEEMIQMGHA-----------------------PDNFTYNTAIDTFC 245
                      + L EMI  G                         PD  TY T +D + 
Sbjct: 493 LFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYF 552

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
               +  A  +F  M   G T   P  + Y IMI  L +   ++E  SL   M +    P
Sbjct: 553 LVNELKHAKYVFYSMAQMGVT---PNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFP 609

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           ++ TY  +++ +C    +E A   L+EM   G  PD+ +Y   L  LC +   + A  ++
Sbjct: 610 NIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIF 669

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            R++  G   +VQ Y  +I+   + G  D A +   +M+ +GC  D  T+ ++I  LF+ 
Sbjct: 670 QRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEK 729

Query: 426 SKVEEACFLLEEVVNKGL 443
            + ++A  +L E++ +GL
Sbjct: 730 DENDKAEKILXEMIARGL 747



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 16/282 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G       + ++++ + VKP+   YN +                  EMI  G
Sbjct: 174 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKG 233

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +P+  TYN  +  FC    + EA  L   M+ K     +P   T+  +I AL +  +M+
Sbjct: 234 ISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNI---NPDVCTFNTLIDALGKEGKMK 290

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +L  M+ +   PDV TY  +++G     KV+ A      M   G  P++ TY   +
Sbjct: 291 AAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMI 350

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K  DEA+ L+  M      P + TY  LI    +    + A     +M ++G  
Sbjct: 351 DGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ 410

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
            DV +Y +++D L    ++E A    + ++ KG  L  + ++
Sbjct: 411 PDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYN 452



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 3/207 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  PD  T N  ++ FC    +T A  +   +  +G     P A T   +I  L     +
Sbjct: 93  GATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGY---HPNAITLNTLIKGLCFRGEI 149

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++       ++  G   +  +Y+ ++ G+C  G+ +   + L ++      PD+V YN  
Sbjct: 150 KKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTI 209

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC NK   +A  LY  MI  G  P+V TYN L+  +  +G    AF   +EM  +  
Sbjct: 210 IHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNI 269

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLL 435
             DV T+  +ID L    K++ A  +L
Sbjct: 270 NPDVCTFNTLIDALGKEGKMKAAKIVL 296



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 1/211 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    +  ++ +LV N       SL     ++G  PD+ T   ++   C    +  A+  
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L  +  +GY P+ +T N  +K LC      +AL  + +++  G   +  +Y  LI+   +
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            GE         +++      DV  Y  +I  L     + +AC L  E++ KG+      
Sbjct: 181 TGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVT 240

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMR-KFYNP 479
           +++ +    ++G L     L + M+ K  NP
Sbjct: 241 YNALVYGFCIMGHLKEAFSLLNEMKLKNINP 271



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%)

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PP    +N  L  L +NK+    + L+ +    G  P + T N+L++ +  L     AF 
Sbjct: 60  PPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFS 119

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
               + KRG   +  T   +I GL    ++++A +  ++VV +G +L    + + +  L 
Sbjct: 120 VLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLC 179

Query: 459 VIGDLGAIHKL 469
             G+  A+ +L
Sbjct: 180 KTGETKAVARL 190


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 20/285 (7%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGM------------ 219
           TQP  N L   + A  + G +  A  + + +     +P+  TYN+L +            
Sbjct: 277 TQPTYNTL---VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAF 333

Query: 220 QTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  +EM ++  A PD  TYNT +D   K R  ++A  L E MR KG     PT  T+ I+
Sbjct: 334 RLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGV---KPTLVTHNIV 390

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           + +L +  ++EE    L  +   G  PDV TY  +++  C AG V +A+  ++EM  KG 
Sbjct: 391 VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGL 450

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D  T N  L  LC  K  ++A  L     + G  P   +Y  +++ YF+   P+ A  
Sbjct: 451 KMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALR 510

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            W +M +R     + TY  +I GL    +++EA   L E+V KGL
Sbjct: 511 LWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGL 555



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 19/288 (6%)

Query: 174 QPEINALNLLLDALCKC-GLVDYAETICKR--VKNKVKPNANTYNIL------------G 218
           +P + A N +L AL +    +  A     R  ++ ++ PN  T+N+L             
Sbjct: 168 RPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADA 227

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           + TL  M   G +PD  TYNT ++  C+  M+ EA  L   M+  G    +PT  TY  +
Sbjct: 228 LATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG---IAPTQPTYNTL 284

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           + A  +   +++   ++  M   G  PD+ TY  +  G+C AGKV+EA++  +EM     
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLST 344

Query: 339 P-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+VTYN  +      +   +ALRL   M + G  P++ T+N+++    + G+ + A 
Sbjct: 345 ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEAL 404

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
               ++ + G A DV TY  +ID       V +A  L++E+V KGLK+
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKM 452



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 16/281 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-----ETICKRVK-NKVKPNANTYNILGM---QTLEEM 225
           P++   N L+DA CK G V  A     E + K +K +    N   YN+  M   +  EE+
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 226 I----QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +    Q G  PD  +Y T +  + K      A  L++ M  +      P+  TY  +I  
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLI---PSISTYNTLIKG 533

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + +R++E    L  ++  G +PD +TY  ++   C  G +E A++F  +M    + PD
Sbjct: 534 LCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD 593

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VT N  +  LC +   D+AL+L+   +E G    V TYN LI    ++G+ D A   + 
Sbjct: 594 VVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFD 653

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +M+ +G   D  TY V++  L +  + EEA  +L ++ + G
Sbjct: 654 DMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 181/403 (44%), Gaps = 26/403 (6%)

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDVL 158
           R  +    +D  A     YN ++   +   +  +  ++V SM  Y  + + + +  + V 
Sbjct: 263 RALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVG 322

Query: 159 LMILKQYTEKIKVKTQ--------PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKP 209
           L    +  E  ++K +        P++   N L+DA  K      A  + + +++K VKP
Sbjct: 323 LCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKP 382

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
              T+NI+             +  LE++ + G APD  TYNT ID +CKA  V +A  L 
Sbjct: 383 TLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLM 442

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + M  KG  + + T  T   ++  L +  R E+   LL      G +PD  +Y  V+   
Sbjct: 443 DEMVGKGLKMDTFTLNT---VLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAY 499

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
                 E A +  ++M  +   P I TYN  +K LC  +   EA+     ++E G  P  
Sbjct: 500 FKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDE 559

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TYN++I  Y + G+ + AF   ++M +     DV T   +++GL    K+++A  L E 
Sbjct: 560 TTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFES 619

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNP 479
            V KG K+    +++ +  +  +GD+  A+H   D   K   P
Sbjct: 620 WVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQP 662



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 39/264 (14%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++  ++MI+    P   TYNT I   C+   + EA D    +  KG     P   TY I
Sbjct: 508 ALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLV---PDETTYNI 564

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I A  +   +E  F     M+ +   PDV T   ++ G+CL GK+++A K  E    KG
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              D++TYN  ++ +C   + D AL  +  M   G  P   TYN+++S   E G  + A 
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAH 684

Query: 398 ETWHEMDKRG-------C---------------------------AQD--VDTYCVMIDG 421
              H++   G       C                           AQD  ++TY   ++G
Sbjct: 685 NMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNG 744

Query: 422 LFDCSKVEEACFLLEEVVNKGLKL 445
           L    +++EA  +L+E++ KG+ +
Sbjct: 745 LCTGGQLKEAKAVLDEMMQKGMPV 768



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 87/215 (40%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P +   + A+  + + R+   AA L   +R +     S  A    +  ++   +   +  
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +   +I     P+  T+  ++   C  G + +A   L  M   G  PD VTYN  L  
Sbjct: 193 LDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNA 252

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C      EA  L  RM   G  P+  TYN L+S +  LG    A +    M   G   D
Sbjct: 253 HCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPD 312

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           + TY V+  GL    KV+EA  L +E+      LP
Sbjct: 313 LRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALP 347



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 52/227 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQT 221
           P+    N+++ A CK G ++ A     K V+N  KP+  T N L             ++ 
Sbjct: 557 PDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKL 616

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E  ++ G   D  TYNT I + CK   V  A   F+ M  KG     P A TY +++ A
Sbjct: 617 FESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGL---QPDAFTYNVVLSA 673

Query: 282 LVQNDRMEECFSLLGHMINSGCL-------------------------PD---------- 306
           L +  R EE  ++L  + +SG L                         P+          
Sbjct: 674 LSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDN 733

Query: 307 -VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            + TY E L G+C  G+++EA   L+EM  KG P D  TY   ++ L
Sbjct: 734 ALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGL 780



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 52/137 (37%)

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+  T+N  +   C      +AL     M   G  P   TYN L++ +   G    A   
Sbjct: 206 PNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 265

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
              M + G A    TY  ++        +++A  ++E +   G +   R ++   + L  
Sbjct: 266 LARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQ 325

Query: 460 IGDLGAIHKLSDHMRKF 476
            G +    +L D M + 
Sbjct: 326 AGKVDEAFRLKDEMERL 342


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 16/294 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           + + E +    +P I     L+   C  G VD A  +   +     K +  TYN+     
Sbjct: 276 EMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGY 335

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++  +EM + G  P+  TYN+ ID  CKA  V+ A ++ + M   G T   
Sbjct: 336 CKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT--- 392

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T  I++  L ++ R+++   L   ++ SG  PDV +Y  ++ G C + ++ EA   
Sbjct: 393 PDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNL 452

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L +M  K   P IVTY+C +  LC +     A RL   M   G  P   TY++L+   ++
Sbjct: 453 LRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWK 512

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               D A   +++M KRG   DV  Y +MIDG     +++EA  L  E+  K L
Sbjct: 513 KQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNL 566



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 133/283 (46%), Gaps = 24/283 (8%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNK---------VKPNANTYNIL------------GMQ 220
           +L++ LC+ G V+ A  + + ++ +         VK N   Y+I+            G +
Sbjct: 147 ILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFE 206

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+  G  P+ FTY + I   C      E   L + M  +G  +S      + ++I 
Sbjct: 207 FYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVS---VYVFTVLID 263

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +N  + E   +   M+N G  P++ T   ++ G CL G V+ A +  + +G  G+  
Sbjct: 264 GLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKR 323

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+ TYN F+   C      +A+R++  M   G  P++ TYN LI    + GE  GA+E  
Sbjct: 324 DVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIV 383

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M + G   D+ T C+++DGL    ++++A  L  ++V  GL
Sbjct: 384 KTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGL 426



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 16/256 (6%)

Query: 181 NLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+ +   CK G V D      +  +  V PN  TYN L              + ++ M +
Sbjct: 329 NVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHR 388

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  T    +D  CK++ + +A  LF  +   G T   P   +Y I+I     + R
Sbjct: 389 SGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLT---PDVWSYTILIHGCCTSRR 445

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           M E  +LL  M     +P + TY  +++G+C +G++  A++ L EM  KG  PD +TY+ 
Sbjct: 446 MGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSI 505

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L  L   ++ DEA+ L+ +MI+ G  P V  Y ++I  Y +    D A   + EM  + 
Sbjct: 506 LLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKN 565

Query: 408 CAQDVDTYCVMIDGLF 423
              D+ TY ++ + +F
Sbjct: 566 LVPDIVTYTILFNAVF 581



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 144/344 (41%), Gaps = 80/344 (23%)

Query: 181 NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           ++++D LC+ G VD   E   + + N V PN  TY  L            G   ++EMI+
Sbjct: 189 SIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIR 248

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--STISSPTA------------- 272
            G     + +   ID  CK  M+ EA ++F+ M  +G    I + TA             
Sbjct: 249 RGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDM 308

Query: 273 -----------------KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
                             TY + I    +  R+ +   +   M   G +P++ TY  +++
Sbjct: 309 ARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLID 368

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
            +C AG+V  A++ ++ M   G  PDIVT    L  LC +K  D+A+ L+ +++E G  P
Sbjct: 369 CLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTP 428

Query: 376 SVQTYNMLIS-----------------MYFE------------------LGEPDGAFETW 400
            V +Y +LI                  M+ +                   G    A+   
Sbjct: 429 DVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLL 488

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +EM  +G   D  TY +++D L+    ++EA FL  +++ +GL+
Sbjct: 489 NEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLE 532



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           ++ + E  +    P I   N L+D LCK G V  A  I K + ++ + P+  T  IL   
Sbjct: 345 VRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDG 404

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +    ++++ G  PD ++Y   I   C +R + EA +L   M  K     
Sbjct: 405 LCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLV-- 462

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+ +I  L ++ R+   + LL  M   G LPD  TY  +L+ +     ++EA  
Sbjct: 463 -PHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVF 521

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              +M  +G  PD++ Y   +   C ++  DEA+ L+  M      P + TY +L +  F
Sbjct: 522 LFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVF 581

Query: 389 ELGE 392
           + G 
Sbjct: 582 KSGS 585



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 11/206 (5%)

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           FS+ G ++  G   D      VL+G+C+ G V +A +F +E+ N G+  + V+Y   +  
Sbjct: 92  FSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILING 151

Query: 352 LCDNKNGDEALRLYGRMIEVGCW---------PSVQTYNMLISMYFELGEPDGAFETWHE 402
           LC+N   +EA+ L  RMIE              +V  Y+++I      G  D  FE ++E
Sbjct: 152 LCENGRVNEAVNLL-RMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNE 210

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M   G   +  TY  +I GL    K  E   L++E++ +GL +    F   +  L   G 
Sbjct: 211 MMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGM 270

Query: 463 LGAIHKLSDHM-RKFYNPVIARRLAL 487
           L    ++ D M  + Y P I    AL
Sbjct: 271 LVEAREMFDEMVNRGYEPNIVTCTAL 296



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 28/185 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   + L+D LC+ G          R+ N              + L EM   G  PD 
Sbjct: 463 PHIVTYSCLIDGLCRSG----------RISN------------AWRLLNEMHVKGPLPDT 500

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY+  +D   K + + EA  LF  M  +G     P    Y IMI    +++R++E  +L
Sbjct: 501 ITYSILLDALWKKQHLDEAVFLFNQMIKRGL---EPDVMCYTIMIDGYCKSERIDEAINL 557

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M     +PD+ TY  +   +  +G     +KF+  + +   PP ++ Y   L  LC 
Sbjct: 558 FREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKY---LAALCK 614

Query: 355 NKNGD 359
           +++ D
Sbjct: 615 SEHLD 619


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 15/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVK 208
           K F     L   L  + +  K+   P++   N LL  LC    V  A  +  ++ +   +
Sbjct: 122 KCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCR 181

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  T+  L             +  L+ M++ G  P   TY T +D  CK      A +L
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M      I  P    Y+ +I +L ++ R  +  +L   M   G  PD+ TY  ++ G
Sbjct: 242 LRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C +G+  +A + L+EM  +   PD+VTYN  +          EA  LY  M+  G  P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TY+ +I  + +    D A   ++ M  +GC+ ++ T+  +IDG     ++++   LL 
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+   GL      +++ +    ++GDL A   L   M
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 17/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L  + +  +   +P +     L++ LC+ G +  A  +  R+ ++ ++P   TY  +   
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 218 ---------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                     +  L +M ++ H  P+   Y+  ID+ CK    ++A +LF  M+ KG   
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF- 287

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  MIV    + R  +   LL  M+     PDV TY  ++      GK  EA 
Sbjct: 288 --PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  +EM  +G  P+ +TY+  +   C     D A  ++  M   GC P++ T+N LI  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 D   E  HEM + G   D  TY  +I G +    +  A  LL+E+++ GL
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P +   N L+D  C    +D   E + +  +  +  +  TYN L             + 
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
            L+EMI  G  PD  T +T +D  C    + +A ++F+ M+     + +        P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +  + 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+   +   C     D+ L L+  M   G   +  TY  LI  + ++G 
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ GL+   +++ A  +LE++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 27/303 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E +     P     + ++D  CK   +D AE +   +  K   PN  T+N L      
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+ L EM + G   D  TYNT I  F     +  A DL + M + G     P 
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL---CPD 464

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLA 320
             T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GK  EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             LI+ Y + G  D   E + EM +RG   +  TY  +I G      +  A  + +E+++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 441 KGL 443
            G+
Sbjct: 645 SGV 647



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 17/272 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GM 219
           QP       ++D +CK G    A  + ++++  + + PN   Y+ +              
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM + G  PD FTYN+ I  FC +   ++A  L + M  +     SP   TY  +I
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI---SPDVVTYNALI 332

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A V+  +  E   L   M+  G +P+  TY  +++G C   +++ A      M  KG  
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++T+N  +   C  K  D+ + L   M E G      TYN LI  ++ +G+ + A + 
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             EM   G   D+ T   ++DGL D  K+++A
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 244 FCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           F + + + +A DLF + +R++      P+   +  ++  +V+ +R +   SL   M    
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSR----PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              D+ ++  +++  C   K+  A     ++   G  PD+VT+N  L  LC      EAL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L+ +M E  C P+V T+  L++     G    A      M + G      TY  ++DG+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 162/374 (43%), Gaps = 36/374 (9%)

Query: 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG 191
           A  +  V + L   KR +K F+           + E  KV   P++    +L+D+ CK G
Sbjct: 452 ASTYTKVITFLCQAKRVDKAFL----------LFQEMKKVGVNPDVYTYTILIDSFCKAG 501

Query: 192 LVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYN 238
           L++ A++    +++    PN  TY  L                   M+     P+  TY+
Sbjct: 502 LIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYS 561

Query: 239 TAIDTFCKARMVTEAADLFE-------------FMRTKGSTISSPTAKTYAIMIVALVQN 285
             ID  CKA  + +A +++              +   K +   SP   TY  ++  L + 
Sbjct: 562 ALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKA 621

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            ++ +   LL  M+ +GC P+   Y  +++G C  G+++ A +    M   GY P + TY
Sbjct: 622 QKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTY 681

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +  +  +   D A+++  +M++  C P+V TY  ++    + GE + A      M+K
Sbjct: 682 TSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEK 741

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           +GC+ +V TY  +IDGL    KV+    L  ++  KG    Y  +   +      G L  
Sbjct: 742 KGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDD 801

Query: 466 IHKLSDHMRKFYNP 479
            H L D M++ + P
Sbjct: 802 AHLLLDEMKQTHWP 815



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 123/301 (40%), Gaps = 51/301 (16%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEE------------MIQMG 229
           ++  L +  L + A +   R++ N   PN  TY  L    L++            M+  G
Sbjct: 277 MISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEG 336

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------------------STISSP- 270
             P    +N+ + T+C A     A  LF  M T G                    + +P 
Sbjct: 337 CNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPE 396

Query: 271 ----TAKTYAIMIVA---------------LVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
                 K Y  M+VA               L    + E+ F ++  M+  G +PD STY 
Sbjct: 397 LLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYT 456

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           +V+  +C A +V++A+   +EM   G  PD+ TY   +   C     ++A   +  M   
Sbjct: 457 KVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSA 516

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           GC P+V TY  L+  Y +  +   A + +H M    C  +  TY  +IDGL    ++++A
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKA 576

Query: 432 C 432
           C
Sbjct: 577 C 577



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 151/447 (33%), Gaps = 111/447 (24%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           LT   VV VL   +  E +  RFF+WA  Q  Y H    Y+ + ++L          RL 
Sbjct: 99  LTDSVVVAVLGAVRSPE-LCVRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERL- 156

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
              L  +  +++     DVL  +L                  N+L+   C  GL   A  
Sbjct: 157 ---LREIGEDDR-----DVLGRLL------------------NVLVRRCCLQGLWGEALE 190

Query: 199 ICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
              R+K+   +P+A TYN L              +  +EM   G   D  T  +     C
Sbjct: 191 ELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALC 250

Query: 246 KARMVTEAADLFE-----------------------------FMRTKGSTISSPTAKTYA 276
           K     +A DL E                             F+         P   TY 
Sbjct: 251 KEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYR 310

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++   ++  ++  C  ++  M+  GC P  S +  ++   C A     AYK    M   
Sbjct: 311 TLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTC 370

Query: 337 GYPPDIVTYNCFL-----------------------------------------KVLCDN 355
           G PP  V YN F+                                         + LC  
Sbjct: 371 GCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGV 430

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              ++A ++   M+  G  P   TY  +I+   +    D AF  + EM K G   DV TY
Sbjct: 431 GKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTY 490

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKG 442
            ++ID       +E+A    +E+ + G
Sbjct: 491 TILIDSFCKAGLIEQAQSWFDEMRSAG 517



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 54/274 (19%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           S++D M ++ ++ + + VL  +LK           P +     ++D LCK G  + A  +
Sbjct: 683 SLIDRMFKDGRLDLAMKVLSQMLKD-------SCNPNVVTYTAMVDGLCKTGETEKALNL 735

Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
              ++ K   PN  TY  L            G++   +M   G AP+  TY   I+  C 
Sbjct: 736 LSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCA 795

Query: 247 ARMV------------TEAADLFEFMRTKGSTIS------------------SPTAKTYA 276
           A ++            T      +  RT     S                  +P A  Y 
Sbjct: 796 AGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYG 855

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVST---YKEVLEGMCLAGKVEEAYKFLEEM 333
           ++I +  +  R+E    L   M+      ++++   +  +++ +CL+ +VEEA     EM
Sbjct: 856 MLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEM 915

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRL-YG 366
             +G  PD+  + C +K L +    +EAL+L YG
Sbjct: 916 RRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYG 949



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 111/291 (38%), Gaps = 52/291 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P ++    L+D + K G +D A + + + +K+   PN  TY  +             +  
Sbjct: 676 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNL 735

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI-- 279
           L  M + G +P+  TY   ID   KA  V    +LF  M+TKG    +P   TY I+I  
Sbjct: 736 LSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGC---APNYVTYRILINH 792

Query: 280 -----------------------------VALVQ--NDRMEECFSLLGHMINSGCLPDVS 308
                                           VQ  + R      LL  M +    P   
Sbjct: 793 CCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAP 852

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT---YNCFLKVLCDNKNGDEALRLY 365
            Y  +++    AG++E A +  +EM       ++ +   +   ++ LC +   +EA+ LY
Sbjct: 853 VYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALY 912

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             M   G  P +  +  L+    E  + + A +  + + + G   + + +C
Sbjct: 913 SEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGVNWEGNKFC 963


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 184/412 (44%), Gaps = 37/412 (8%)

Query: 26  LQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVP----LTT 81
           L+S   +V S+  +  + ++ S S V  L    +D S    N +  LD L V     L  
Sbjct: 55  LRSIDREVISVRSRFLESANHSASRV--LVTLQLDESGF--NSKSVLDELNVRVSGLLVR 110

Query: 82  DSVVGVLQRFQFEEK-----IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
           + +VG+L+   ++ K     +A+RFF+W+G Q+ + H   +Y+L++ I +        +R
Sbjct: 111 EVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWR 170

Query: 137 LVCSML-DYMKRNNKVF-------VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
           LV  M+ D      + F           +    + Q+ +      +P  ++ N +L++L 
Sbjct: 171 LVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLL 230

Query: 189 KCGLVDYAETICKR-VKNKVKPNANTYNILGM------------QTLEEMIQMGHAPDNF 235
                   E + K+ +++   P+  TYNIL              +  +EM + G +PD++
Sbjct: 231 GVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSY 290

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TYN  +    K      A      M+  G     P+   Y  +I  L +   +E C   L
Sbjct: 291 TYNILLHILGKGNKPLAALTTLNHMKEVG---IDPSVLHYTTLIDGLSRAGNLEACKYFL 347

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+ +GC PDV  Y  ++ G  ++G++++A +   EM  KG  P++ TYN  ++ LC  
Sbjct: 348 DEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMA 407

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
               EA  L   M   GC P+   Y+ L+S   + G+   A +   EM K+G
Sbjct: 408 GEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 84/205 (40%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T  +Y +++    +    +  + L+  M+  G      T+  ++     AG  ++A    
Sbjct: 148 TVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQF 207

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            +     Y P   +YN  L  L   K       +Y +M+E G  P V TYN+L+   + L
Sbjct: 208 MKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRL 267

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+ D     + EM + G + D  TY +++  L   +K   A   L  +   G+      +
Sbjct: 268 GKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHY 327

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRK 475
            + +  LS  G+L A     D M K
Sbjct: 328 TTLIDGLSRAGNLEACKYFLDEMVK 352


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 50/357 (14%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
            N++L  LC  G    A  + +++    +PNA TYN +             +  + EM +
Sbjct: 157 FNIMLRHLCSAGKPARALELLRQMP---RPNAVTYNTVIAGFCSRGRVQAALDIMREMRE 213

Query: 228 MGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP---------------- 270
            G  AP+ +TY T I  +CK   V EA  +F+ M TKG                      
Sbjct: 214 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 273

Query: 271 -----------------TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
                            T  TY +++ AL  + R  E + L+  M   G   DV TY  +
Sbjct: 274 DTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNIL 333

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G C  G V++A +  E M  +G    +VTY   +  L       E  +L+   +  G 
Sbjct: 334 INGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGI 393

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P +  YN LI+ +   G  D AFE   EM+K+  A D  TY  ++ GL    +V+EA  
Sbjct: 394 RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARK 453

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNPVIARRLALNQ 489
           L++E+  +G++     +++ +   S+ GD+  A+   ++ M K +NP +    AL Q
Sbjct: 454 LIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 510



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 134/287 (46%), Gaps = 16/287 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL----------- 217
           K + +PE    N L+   C  G +D A     R V+  V     TYN+L           
Sbjct: 250 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGT 309

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              + +EEM   G A D FTYN  I+  CK   V +A ++FE M  +G      T  TY 
Sbjct: 310 EAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGV---RATVVTYT 366

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I AL +  +++E   L    +  G  PD+  Y  ++     +G ++ A++ + EM  K
Sbjct: 367 SLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 426

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              PD VTYN  ++ LC     DEA +L   M + G  P + TYN LIS Y   G+   A
Sbjct: 427 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDA 486

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               +EM  +G    + TY  +I GL    + ++A  +++E+V  G+
Sbjct: 487 LRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 533



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 33/172 (19%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNK------------------------------ 336
            +T+  +L  +C AGK   A + L +M                                 
Sbjct: 154 TTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRE 213

Query: 337 --GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEP 393
             G  P+  TY   +   C     DEA++++  M+  G   P    YN LI  Y + G+ 
Sbjct: 214 RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKL 273

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           D A      M +RG A  V TY +++  LF   +  EA  L+EE+  KGL L
Sbjct: 274 DTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAL 325


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 15/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVK 208
           K F     L   L  + +  K+   P++   N LL  LC    V  A  +  ++ +   +
Sbjct: 122 KCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCR 181

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  T+  L             +  L+ M++ G  P   TY T +D  CK      A +L
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M      I  P    Y+ +I +L ++ R  +  +L   M   G  PD+ TY  ++ G
Sbjct: 242 LRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C +G+  +A + L+EM  +   PD+VTYN  +          EA  LY  M+  G  P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TY+ +I  + +    D A   ++ M  +GC+ ++ T+  +IDG     ++++   LL 
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+   GL      +++ +    ++GDL A   L   M
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 17/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L  + +  +   +P +     L++ LC+ G +  A  +  R+ ++ ++P   TY  +   
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 218 ---------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                     +  L +M ++ H  P+   Y+  ID+ CK    ++A +LF  M+ KG   
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF- 287

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  MIV    + R  +   LL  M+     PDV TY  ++      GK  EA 
Sbjct: 288 --PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  +EM  +G  P+ +TY+  +   C     D A  ++  M   GC P++ T+N LI  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 D   E  HEM + G   D  TY  +I G +    +  A  LL+E+++ GL
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P +   N L+D  C    +D   E + +  +  +  +  TYN L             + 
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
            L+EMI  G  PD  T +T +D  C    + +A ++F+ M+     + +        P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +  + 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+   +   C     D+ L L+  M   G   +  TY  LI  + ++G 
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ GL+   +++ A  +LE++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 27/303 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E +     P     + ++D  CK   +D AE +   +  K   PN  T+N L      
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+ L EM + G   D  TYNT I  F     +  A DL + M + G     P 
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL---CPD 464

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLA 320
             T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GK  EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             LI+ Y + G  D   E + EM +RG   +  TY  +I G      +  A  + +E+++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 441 KGL 443
            G+
Sbjct: 645 SGV 647



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 17/272 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GM 219
           QP       ++D +CK G    A  + ++++  + + PN   Y+ +              
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM + G  PD FTYN+ I  FC +   ++A  L + M  +     SP   TY  +I
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI---SPDVVTYNALI 332

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A V+  +  E   L   M+  G +P+  TY  +++G C   +++ A      M  KG  
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++T+N  +   C  K  D+ + L   M E G      TYN LI  ++ +G+ + A + 
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             EM   G   D+ T   ++DGL D  K+++A
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 244 FCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           F + + + +A DLF + +R++      P+   +  ++  +V+ +R +   SL   M    
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSR----PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              D+ ++  +++  C   K+  A     ++   G  PD+VT+N  L  LC      EAL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L+ +M E  C P+V T+  L++     G    A      M + G      TY  ++DG+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 16/285 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           EK+K   + ++    +++D+LCK G+   A +   + +   + P+   Y+ L        
Sbjct: 136 EKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFG 195

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  +EM   G + D +TYN+ I    +A +  E       M  +G    SP A 
Sbjct: 196 RLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF---SPDAF 252

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I+I  L +  ++ E   +L  M + G  PD+ TY  ++ G+CL G++E+A K  E +
Sbjct: 253 TFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESL 312

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            ++G   ++ +YN  +   C ++  DEA RL+  M   G  PS  TYN LI    + G  
Sbjct: 313 ADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRV 372

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             A + + EM   G    + TYCV++DGL     +EEA  L + +
Sbjct: 373 RTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSI 417



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 16/251 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P+I   N L++ LC  G ++ A  + + + ++ +K N  +YNIL              +
Sbjct: 283 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 342

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM   G  P   TYNT I   C++  V  A  LF  M+T G  +      TY +++ 
Sbjct: 343 LFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK---LSTYCVLLD 399

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +N  +EE   L   +  +   P++  +  +L+GMC AGK+EEA+K  +E+   G  P
Sbjct: 400 GLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEP 459

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D + YN  +  LC+     EA++L  +M E GC P   T+N++I    +  E   A +  
Sbjct: 460 DTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 519

Query: 401 HEMDKRGCAQD 411
            EM  R  + D
Sbjct: 520 EEMRNRNFSPD 530



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 135/280 (48%), Gaps = 16/280 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------------GMQT 221
           P+     +L+D LCK G V  A+ I + + +K K P+  TYN L              + 
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKL 308

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E +   G   + F+YN  I+ +CK + + EA  LFE MR KG     P+  TY  +I A
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL---KPSTVTYNTLIGA 365

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q+ R+     L   M   G    +STY  +L+G+C  G +EEA    + +    + P+
Sbjct: 366 LCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPN 425

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I  ++  L  +C     +EA + +  + + G  P    YN+LI+     G    A +   
Sbjct: 426 IEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLW 485

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +M+++GC  D  T+ V+I  L   +++ EA  LLEE+ N+
Sbjct: 486 QMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNR 525



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 16/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--G 218
           L  ++E I     P++   + L+D LC+ G +  A    K ++ + +  +  TYN L  G
Sbjct: 166 LDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHG 225

Query: 219 MQT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           +            L  M+  G +PD FT+   ID  CK   V EA  + E M  KG    
Sbjct: 226 LSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGK--- 282

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  ++  L    ++E+   L   + + G   +V +Y  ++ G C   K++EA++
Sbjct: 283 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 342

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             EEM  KG  P  VTYN  +  LC +     A +L+  M   G +  + TY +L+    
Sbjct: 343 LFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLC 402

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + G  + A + +  + K     +++ + +++DG+    K+EEA    +E+   GL+
Sbjct: 403 KNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLE 458



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           L D + + GL   A+T    +    K       I     L E ++     D FTY   ID
Sbjct: 99  LFDEMTEKGLFGDAKTYGILINGLCKARKTGLAI----KLHEKMKGNCKGDVFTYGMIID 154

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           + CK  M TEA D+F  M   G     P    Y+ ++  L +  R++E       M   G
Sbjct: 155 SLCKDGMTTEALDMFSEMIGAGIL---PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 211

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              DV TY  ++ G+  AG  +E   FL  M ++G+ PD  T+   +  LC      EA 
Sbjct: 212 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQ 271

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           ++   M   G  P + TYN L++    +G+ + A + +  +  RG   +V +Y ++I+G 
Sbjct: 272 QILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGY 331

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
               K++EA  L EE+  KGLK     +++ +  L   G +    KL   M+
Sbjct: 332 CKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQ 383



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 107/255 (41%), Gaps = 18/255 (7%)

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           ++ G  PD  T  T +        + +A  LF+ M  KG       AKTY I+I  L + 
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLF---GDAKTYGILINGLCKA 125

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +      L   M    C  DV TY  +++ +C  G   EA     EM   G  PD+V Y
Sbjct: 126 RKTGLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVY 184

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE--- 402
           +  +  LC      EAL  +  M   G    V TYN LI      G        W E   
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG-------LWKEVTW 237

Query: 403 ----MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
               M  RG + D  T+ ++IDGL    KV EA  +LE + +KG +     +++ +  L 
Sbjct: 238 FLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLC 297

Query: 459 VIGDLGAIHKLSDHM 473
           ++G L    KL + +
Sbjct: 298 LVGQLEDATKLFESL 312


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 155/359 (43%), Gaps = 38/359 (10%)

Query: 103 MWAGHQDNYAHEP----LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
           MW  + D  A       + Y  +ID         K FRL   M++      K+F  V + 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE-----KKIFPTVVIY 231

Query: 159 LMILKQYTEKIKVKTQ-------------PEINALNLLLDALCKCGLVDYA-ETICKRVK 204
            ++++    + ++                P +   N ++D  CK   V  A E   + + 
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLG 291

Query: 205 NKVKPNANTYNIL--GMQTLEEMIQ----------MGHAPDNFTYNTAIDTFCKARMVTE 252
           + + PN  T+ IL  G+   +EM+            G  P+ F YN  ID +CKA  ++E
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE 351

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  L   +         P   TY+I+I  L   DRMEE   LL  M   G LP+  TY  
Sbjct: 352 ALSLHSEIEKHEIL---PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++G C  G +E+A +   +M  KG  P+I+T++  +   C     + A+ LY  M+  G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             P V  Y  LI  +F+ G    AF    EM + G   +V T   +IDGL    ++ +A
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 137/299 (45%), Gaps = 16/299 (5%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
            L   + + E I+ K  P +    +L+  LC    +  AE++ + ++N  + PN  TYN 
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNT 268

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++   EM+  G  P+  T+   ID  CK   +  A      M + G
Sbjct: 269 MMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P    Y  +I    +   + E  SL   +     LPDV TY  +++G+C   ++E
Sbjct: 329 VV---PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EA   L+EM  KG+ P+ VTYN  +   C   N ++A+ +  +M E G  P++ T++ LI
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             Y + G+ + A   + EM  +G   DV  Y  +IDG F     +EA  L +E+   GL
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 169/424 (39%), Gaps = 80/424 (18%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY----------------KAKQFRLVCSM 141
           A   F     + + A  P  Y+ +I +L+  K                 K+++ R+ CS+
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSV 112

Query: 142 LDYMKR-NNKVFVPVDVLLMILKQYTEK----------IKVKTQPEINALNLLLDALCKC 190
            + + R  +  F P +V  +++  ++E            K+   P + A N++LD L K 
Sbjct: 113 FNVLSRLESSKFTP-NVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKK 171

Query: 191 GLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
           G  D    +    V     PN  TY  L              +  +EMI+    P    Y
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIY 231

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
              I   C    ++EA  +F  MR  G     P   TY  M+    +   +++   L   
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGML---PNLYTYNTMMDGYCKIAHVKKALELYXE 288

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M+  G LP+V T+  +++G+C   ++  A KFL +M + G  P+I  YNC +   C   N
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348

Query: 358 GDEALRLYG-------------------------RMIEV----------GCWPSVQTYNM 382
             EAL L+                          RM E           G  P+  TYN 
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI  Y + G  + A E   +M ++G   ++ T+  +IDG     K+E A  L  E+V KG
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 443 LKLP 446
           L LP
Sbjct: 469 L-LP 471



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 33/297 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-----GMQTLEE---- 224
           P I   N L+D  CK G +  A ++   + K+++ P+  TY+IL     G+  +EE    
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M + G  P+  TYNT ID +CK   + +A ++   M  KG     P   T++ +I  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI---EPNIITFSTLIDG 447

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME    L   M+  G LPDV  Y  +++G    G  +EA++  +EM   G  P+
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG---------------CWPSVQTYNMLISM 386
           + T +C +  LC +    +A++L+  + + G               C P+   Y  LI  
Sbjct: 508 VFTLSCLIDGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               G    A + + +M   G   DV T  V+I G F    + +   L  +++  G+
Sbjct: 566 LCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGI 622



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 26/213 (12%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL-- 217
           +  Q TEK     +P I   + L+D  CK G ++ A  +  + V   + P+   Y  L  
Sbjct: 425 VCSQMTEK---GIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF---EFMRTKG 264
                       +  +EM + G  P+ FT +  ID  CK   +++A  LF       T G
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTG 541

Query: 265 S-------TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           S       ++ SP    Y  +I  L  + R+ +       M  SG  PDV T   +++G 
Sbjct: 542 SKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGH 601

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             A  + +      ++   G  P+   Y    K
Sbjct: 602 FRAMHLRDVMMLQADILKMGIIPNSSVYRVLAK 634


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 16/276 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++    ++++ LCK G +D A ++ K++ + K++P    YN +             + 
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALN 277

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM   G  P+  TYN+ I   C     ++A+ L   M  +     +P   T++ +I 
Sbjct: 278 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI---NPNVVTFSALID 334

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A V+  ++ E   L   MI     PD+ TY  ++ G C+  +++EA    E M +K   P
Sbjct: 335 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  +K  C  K  DE + L+  M + G   +  TY  LI  +F+  E D A   +
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
            +M   G   D+ TY +++DGL +  KVE A  + E
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFE 490



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + + +K +  P I   + LL A+ K    D   ++ ++++N  +  N  TY+IL      
Sbjct: 69  FGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCR 128

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ PD  T N+ ++ FC    +++A  L   M   G     P 
Sbjct: 129 RSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG---YQPD 185

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           + T+  +I  L +++R  E  +L+  M+  GC PD+ TY  V+ G+C  G ++ A   L+
Sbjct: 186 SFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLK 245

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M      P +V YN  +  LC+ KN ++AL L+  M   G  P+V TYN LI      G
Sbjct: 246 KMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 305

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    +V T+  +ID      K+ EA  L +E++ + +
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 19/303 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D+ L +LK+  +    K +P +   N ++DALC    V+ A  +   + NK ++PN  T
Sbjct: 237 IDLALSLLKKMEQG---KIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 293

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              + L +MI+    P+  T++  ID F K   + EA  L++ M 
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 353

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +      P   TY+ +I     +DR++E   +   MI+  C P+V TY  +++G C A 
Sbjct: 354 KRSI---DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +V+E  +   EM  +G   + VTY   +      +  D A  ++ +M+  G  P + TY+
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+      G+ + A   +  + +     D+ TY +MI+G+    KVE+   L   +  K
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 442 GLK 444
           G+K
Sbjct: 531 GVK 533



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 132/293 (45%), Gaps = 17/293 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNI--------- 216
           + +++  QP+    N L+  L +      A  +  R V    +P+  TY I         
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235

Query: 217 ---LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
              L +  L++M Q    P    YNT ID  C  + V +A +LF  M  KG     P   
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI---RPNVV 292

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R  +   LL  MI     P+V T+  +++     GK+ EA K  +EM
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +   PDI TY+  +   C +   DEA  ++  MI   C+P+V TYN LI  + +    
Sbjct: 353 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 412

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           D   E + EM +RG   +  TY  +I G F   + + A  + +++V+ G+ LP
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV-LP 464



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 147/339 (43%), Gaps = 26/339 (7%)

Query: 109 DNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVL 158
           DN    P  + YN +I  L +    +   RL+  M++     N V        FV    L
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
           +   K Y E IK    P+I   + L++  C    +D A+ + + + +K   PN  TYN L
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                       GM+   EM Q G   +  TY T I  F +AR    A  +F+ M + G 
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY+I++  L  N ++E    +  ++  S   PD+ TY  ++EGMC AGKVE+
Sbjct: 463 L---PDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
            +     +  KG  P++VTY   +   C     +EA  L+  M E G  P   TYN LI 
Sbjct: 520 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            +   G+   + E   EM       D  T  ++ + L D
Sbjct: 580 AHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHD 618



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 3/253 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M  +G + + +TY+  I+ FC+   ++ A  +   M   G     P   T   ++   
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGY---EPDIVTLNSLLNGF 161

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
              +R+ +  SL+G M+  G  PD  T+  ++ G+    +  EA   ++ M  KG  PD+
Sbjct: 162 CHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDL 221

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   + D AL L  +M +    P V  YN +I         + A   + E
Sbjct: 222 VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           MD +G   +V TY  +I  L +  +  +A  LL +++ + +      F + +      G 
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341

Query: 463 LGAIHKLSDHMRK 475
           L    KL D M K
Sbjct: 342 LVEAEKLYDEMIK 354



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 1/215 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+I+I    +  ++    ++L  M+  G  PD+ T   +L G C   ++ +A   + +M
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY PD  T+N  +  L  +    EA+ L  RM+  GC P + TY ++++   + G+ 
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A     +M++      V  Y  +ID L +   V +A  L  E+ NKG++     ++S 
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
           +  L   G    A   LSD + +  NP +    AL
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++++  +L G M+ S   P +  + ++L  +    K +      E+M N G   ++ TY+
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       AL +  +M+++G  P + T N L++ +        A     +M + 
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G   D  T+  +I GLF  ++  EA  L++ +V KG
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG 216



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 25/182 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+I   ++LLD LC  G V+ A  +                       E + +    PD 
Sbjct: 464 PDIMTYSILLDGLCNNGKVETALVV----------------------FEYLQRSKMEPDI 501

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           +TYN  I+  CKA  V +  DLF  +  KG     P   TY  M+    +    EE  +L
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV---KPNVVTYTTMMSGFCRKGLKEEADAL 558

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M   G LPD  TY  ++      G    + + + EM +  +  D  T      +L D
Sbjct: 559 FREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHD 618

Query: 355 NK 356
            +
Sbjct: 619 GR 620


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 176/427 (41%), Gaps = 64/427 (14%)

Query: 83  SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
           +VVG + R   +     R F W G Q  Y H    YN  +D L+    KA   +L     
Sbjct: 6   TVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALA----KANAGQLAYEKF 61

Query: 143 DYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR 202
             M+R                           P+    +++L  LCK G +D A+ +  +
Sbjct: 62  QQMQRRG-----------------------YPPDDFTYSIVLRGLCKAGELDKAKELLGQ 98

Query: 203 VK-NKVKPNANTYNIL------------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKAR 248
           ++ + VK N  TY+++             ++  + M   G   PD  T+N+ +   C   
Sbjct: 99  LRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGE 158

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            ++EA  LFE+M   G     P   +Y+ ++  L +  R++E   L   M+   C+PD+ 
Sbjct: 159 RMSEAFVLFEYMAKAG---CEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLV 215

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG---------- 358
            Y   + G+C A +V EA     +M  KG   D V ++  + +LC   +           
Sbjct: 216 AYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEH 275

Query: 359 -------DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE-PDGA--FETWHEMDKRGC 408
                  DEA + +  MI     PS + +N LI    +    PDG   F+    M +  C
Sbjct: 276 LCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYC 335

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             +++TY +M+D L    +++EA  L+ E+ N GL      + + +  L  +G L     
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACD 395

Query: 469 LSDHMRK 475
           L + M K
Sbjct: 396 LLEEMSK 402



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 154/359 (42%), Gaps = 53/359 (14%)

Query: 179 ALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN---------------ILGMQTL 222
           A N +++ LC+ G++D A +T  + +     P+A  +N               +L  Q +
Sbjct: 268 AQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM 327

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           + M +    P+  TYN  +D  CKA+ + EA +L   M   G    SP   TY+ ++  L
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL---SPDVVTYSALVDGL 384

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  +++    LL  M   G  PD  T   +L  +  AGKV+ A   LE M  +G  PD+
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDL 444

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  L  LC     DEA+    +M+   C P V +Y ++I+     G+  GA   + E
Sbjct: 445 VTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQE 504

Query: 403 MDKRG--------------------------------CAQDVDTYCVMIDGLFDCSKVEE 430
           M KRG                                C  D   + +++DGL    K E+
Sbjct: 505 MVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAED 564

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489
           AC ++E + + G       + + +  L  +G +    +L D   + +  V   RL++ +
Sbjct: 565 ACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASETHTSV--ERLSMEK 621



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 132/321 (41%), Gaps = 55/321 (17%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           YN+M+D L   K   +   LV  M +Y                              P++
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANY---------------------------GLSPDV 374

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237
              + L+D LCK G +D A                         LEEM + G  PD+FT 
Sbjct: 375 VTYSALVDGLCKLGKLDRA----------------------CDLLEEMSKEGVFPDSFTD 412

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
            + ++   KA  V  A    E M+ +GST   P   TY  ++  L +  R++E  + L  
Sbjct: 413 ASILNALSKAGKVDYALSHLETMKARGST---PDLVTYNTLLDGLCKAGRIDEAITFLAK 469

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M+ + C PDV +Y  ++  +C +G+   A+   +EM  +G  PD V Y+  L  L  N  
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D AL L    +   C P    + M++    + G+ + A E    M   G   D  TY  
Sbjct: 530 EDLALELLKTSL---CKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYIN 586

Query: 418 MIDGLFDCSKVEEACFLLEEV 438
           ++ GL    KV++A  L+++ 
Sbjct: 587 VVRGLRKLGKVDKARQLVDDA 607


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 183  LLDALCK-CGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQM 228
            L+  LCK    +D      K  KN  + P   +YN L             ++  E+M   
Sbjct: 766  LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA 825

Query: 229  GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            G  P+NFTYN  +D   K++ + +  DL+  MR++G     P A T+ I+I ALV+++ +
Sbjct: 826  GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGC---EPNAITHNIIISALVKSNNL 882

Query: 289  EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
             +   L   +++    P   TY  +++G+  AG+ E+A K  EEM + G  P+ V YN  
Sbjct: 883  NKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNIL 942

Query: 349  LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
            +     +   D A  L+ +M++ G  P +++Y +L+      G  D A + + E+   G 
Sbjct: 943  INGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGL 1002

Query: 409  AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
              D  +Y  +I+GL    +++EA  L  E+ N+G+      +++ ++ L + G +    K
Sbjct: 1003 DPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVK 1062

Query: 469  LSDHMR 474
            + + ++
Sbjct: 1063 MYEELQ 1068



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 81/362 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++    +L++ALCK G VD A  +   +  K + PN +TYN +             ++ 
Sbjct: 373 PDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALEL 432

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
           LE M  +G  P  F+Y   ID + K+    +A D FE M+ +G   S             
Sbjct: 433 LENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAE 492

Query: 269 -------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV-- 307
                              SP + TY +++    +  ++++   LL  MI+ GC PDV  
Sbjct: 493 TGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMI 552

Query: 308 ---------------------------------STYKEVLEGMCLAGKVEEAYKFLEEMG 334
                                             TY  +L G+   GK+ +A +    M 
Sbjct: 553 INSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMT 612

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G PP+ +T+N  L  L  N   D AL+++ RM  + C P V TYN +I      G  D
Sbjct: 613 ESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRID 672

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            AF  +H+M K+  + D  T C +I G+    +VE+A  ++ E V++       +F   L
Sbjct: 673 YAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGEL 731

Query: 455 MQ 456
           M+
Sbjct: 732 ME 733



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 151/348 (43%), Gaps = 33/348 (9%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           AF +F       N+ H   A N M++IL     + ++   +  + D M++   ++  +  
Sbjct: 114 AFSYFKIVSQLTNFVHTTDACNYMLEILR----EQRRIEDMVFVFDLMQKK-VIYRNLTT 168

Query: 158 LLMILKQYTEKIKVKTQP----EINALNLLLDALCKCGLV--------DYAETICKR-VK 204
            + I K  + K  +   P    ++  +  +L+A    GL+        + A  + KR + 
Sbjct: 169 YMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFCNEALKVYKRMIS 228

Query: 205 NKVKPNANTYNILG------------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
             +KP+  TY+ L             M  LEEM  +G  P+ +TY   I    +AR + +
Sbjct: 229 EGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDD 288

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  +F+ M  +G     P   TY ++I AL    ++++   L   M  S   PD  TY  
Sbjct: 289 AWGIFKEMDDEGC---GPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYIT 345

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++     G +E   +F  EM   GY PD+VTY   ++ LC + + D A  +   M   G
Sbjct: 346 LMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKG 405

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
            +P++ TYN +I    +    D A E    M+  G      +Y + ID
Sbjct: 406 IFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFID 453



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 159/366 (43%), Gaps = 37/366 (10%)

Query: 59   IDNSNAYDNMEKALDSLGVPLTTDS---VVGVLQRFQFEEKIA--FRFFMWAG-HQDNYA 112
            +D  N +D   K   +LG+  T +S   ++  L    F EK    F     AG H +N+ 
Sbjct: 777  LDAQNVFDKFTK---NLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFT 833

Query: 113  HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172
                 YNL++D    +K   K + L   M       N +              T  I + 
Sbjct: 834  -----YNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAI--------------THNIIIS 874

Query: 173  TQPEINALNLLLDALCKCGLVDYAETICKR---VKNKVKPNANTYNILGMQTLEEMIQMG 229
               + N LN  LD   +    D++ T C     +   +K   +      M+  EEM+  G
Sbjct: 875  ALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQ---AMKIFEEMLDYG 931

Query: 230  HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              P++  YN  I+ F K+  +  A +LF+ M  +G     P  K+Y I++  L    R++
Sbjct: 932  CGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGI---RPDLKSYTILVECLCITGRID 988

Query: 290  ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            E       +  +G  PD  +Y  ++ G+  + +++EA     EM N+G  PD+ TYN  +
Sbjct: 989  EAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALI 1048

Query: 350  KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              L      D A+++Y  +  VG  PSV TYN LI  +   G  D AF  + +M   GC+
Sbjct: 1049 LHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCS 1108

Query: 410  QDVDTY 415
             + +T+
Sbjct: 1109 PNTETF 1114



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 16/262 (6%)

Query: 173  TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GM 219
            T P     NLLLDA  K   ++    +   ++++  +PNA T+NI+             +
Sbjct: 827  THPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKAL 886

Query: 220  QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
                E++    +P   TY   ID   KA    +A  +FE M   G     P +  Y I+I
Sbjct: 887  DLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGC---GPNSVIYNILI 943

Query: 280  VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                ++  ++    L   M+  G  PD+ +Y  ++E +C+ G+++EA ++ EE+   G  
Sbjct: 944  NGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLD 1003

Query: 340  PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            PD V+YN  +  L  ++  DEAL L+  M   G  P + TYN LI      G+ D A + 
Sbjct: 1004 PDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKM 1063

Query: 400  WHEMDKRGCAQDVDTYCVMIDG 421
            + E+   G    V TY  +I G
Sbjct: 1064 YEELQLVGLEPSVFTYNALIRG 1085



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 140/334 (41%), Gaps = 55/334 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--------GMQTLE-- 223
           P++    +L+DALC  G +D A E   K   +   P+  TY  L         ++T++  
Sbjct: 303 PDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRF 362

Query: 224 --EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G+APD  TY   I+  CK+  V  A D+ + M TKG     P   TY  MI  
Sbjct: 363 WNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIF---PNLHTYNTMICG 419

Query: 282 LVQNDRMEECFSLLGHMIN-----------------------------------SGCLPD 306
           L++  R++E   LL +M +                                    G +P 
Sbjct: 420 LLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPS 479

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG--DEALRL 364
           ++     L  +   G++ EA     ++   G  PD VTYN  +K  C +K G  D+A +L
Sbjct: 480 IAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMK--CYSKAGQIDKATQL 537

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              MI  GC P V   N LI+  ++ G  D A++ +  +     A  V TY +++ GL  
Sbjct: 538 LSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGK 597

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
             K+ +A  L   +   G       F+S L  LS
Sbjct: 598 EGKILKALELFGSMTESGCPPNTITFNSLLDCLS 631



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 150/361 (41%), Gaps = 51/361 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI---- 216
           LK Y   I    +P +   + L+ AL + G       + + +K+  ++PN  TY I    
Sbjct: 220 LKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRA 279

Query: 217 LG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           LG            +EM   G  PD  TY   ID  C A  + +A +L+  MR   ++  
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMR---ASSH 336

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           SP   TY  ++    +   +E        M   G  PDV TY  ++E +C +G V+ A+ 
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L+ M  KG  P++ TYN  +  L   +  DEAL L   M  +G  P+  +Y + I  Y 
Sbjct: 397 MLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYG 456

Query: 389 ELGEPDGAFETWHEMDKRG---------------------------------CAQDVD-- 413
           + G+P  A +T+  M KRG                                 C    D  
Sbjct: 457 KSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSV 516

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY +++       ++++A  LL E+++KG +      +S +  L   G + A  K+   +
Sbjct: 517 TYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRL 576

Query: 474 R 474
           +
Sbjct: 577 K 577



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M ++G   + ++YN  I          EA  +++ M ++G     P+ KTY+ ++VA
Sbjct: 189 LRKMTEVGFILNAYSYNGLIHLLLPG-FCNEALKVYKRMISEGM---KPSMKTYSALMVA 244

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +     +  +LL  M + G  P++ TY   +  +  A ++++A+   +EM ++G  PD
Sbjct: 245 LGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPD 304

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TY   +  LC     D+A  LY +M      P   TY  L+  + ++G+ +     W+
Sbjct: 305 VITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWN 364

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM+  G A DV TY ++I+ L     V+ A  +L+ +  KG+
Sbjct: 365 EMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGI 406



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 45/211 (21%)

Query: 162  LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
            +K + E +     P     N+L++   K G +D+A E   K VK  ++P+  +Y IL   
Sbjct: 921  MKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVEC 980

Query: 218  ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +Q  EE+   G  PD  +YN  I+   K+R + EA  LF  M+ +G +  
Sbjct: 981  LCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPD 1040

Query: 269  --------------------------------SPTAKTYAIMIVALVQNDRMEECFSLLG 296
                                             P+  TY  +I     +   ++ FS+  
Sbjct: 1041 LYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFK 1100

Query: 297  HMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             M+  GC P+  T+ ++      AG V   +
Sbjct: 1101 KMMVVGCSPNTETFAQLPNKYPRAGLVHNPF 1131


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 141/275 (51%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           ++D+LC+ G +D A ++ K ++ K +K +  TYN L            G+Q L++M    
Sbjct: 211 IIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRK 270

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  T+N  ID F K   + EA +L++ M TKG    SP   TY  ++      +R+ 
Sbjct: 271 IIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGI---SPNTITYNSLMDGYCMQNRLS 327

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  ++L  M+ + C PD+ T+  +++G C   +V+E  K   ++  +G   + VTY+  +
Sbjct: 328 EANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           +  C +   + A  L+  M+ +G  P V TY +L+    + G+ + A E + ++ K    
Sbjct: 388 QGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMN 447

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D+  Y ++I+G+    KVE+A  L   +  KG+K
Sbjct: 448 LDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVK 482



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 45/322 (13%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNI----------- 216
           +K+  +P+    N L++ LC    V  A  +  R V+N  +PN  TYN            
Sbjct: 127 MKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDT 186

Query: 217 -LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--STISS---- 269
            L +  L +M +     D FTY+T ID+ C+   +  A  LF+ M TKG  S++ +    
Sbjct: 187 SLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSL 246

Query: 270 --------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
                                     P   T+ ++I   V+  +++E   L   MI  G 
Sbjct: 247 VGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGI 306

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            P+  TY  +++G C+  ++ EA   L+ M      PDIVT+   +K  C  K  DE ++
Sbjct: 307 SPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMK 366

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+ ++ + G   +  TY++L+  + + G+ + A E + EM   G   DV TY +++DGL 
Sbjct: 367 LFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLC 426

Query: 424 DCSKVEEACFLLEEVVNKGLKL 445
           D  K+E+A  + E++    + L
Sbjct: 427 DNGKLEKALEIFEDLQKSKMNL 448



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 140/298 (46%), Gaps = 19/298 (6%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
           + +LK  T +   K  P +   N+L+D   K G +  A  + K +  K + PN  TYN L
Sbjct: 260 VQLLKDMTSR---KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSL 316

Query: 218 ----GMQT--------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                MQ         L+ M++   +PD  T+ + I  +CK + V E   LF  +  +G 
Sbjct: 317 MDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGL 376

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
             ++ T   Y+I++    Q+ ++E    L   M++ G LPDV TY  +L+G+C  GK+E+
Sbjct: 377 VANTVT---YSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEK 433

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +  E++       DIV Y   ++ +C     ++A  L+  +   G  P+V TY ++IS
Sbjct: 434 ALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 493

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              + G    A     +M++ G   +  TY  +I        +  +  L+EE+ + G 
Sbjct: 494 GLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF 551



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 25/263 (9%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFT 236
           I  LN++++  C+C    +A                 Y++LG     +++++G+ PD  T
Sbjct: 100 IYTLNIMINCFCRCCKTCFA-----------------YSVLG-----KVMKLGYEPDTTT 137

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           +NT I+  C    V+EA  L   M   G     P   TY  ++  + ++        LL 
Sbjct: 138 FNTLINGLCLESKVSEAVVLVARMVENG---CQPNVVTYNSIVNGICKSGDTSLALDLLR 194

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M       DV TY  +++ +C  G ++ A    +EM  KG    +VTYN  +  LC   
Sbjct: 195 KMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAG 254

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++ ++L   M      P+V T+N+LI ++ + G+   A E + EM  +G + +  TY 
Sbjct: 255 KWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYN 314

Query: 417 VMIDGLFDCSKVEEACFLLEEVV 439
            ++DG    +++ EA  +L+ +V
Sbjct: 315 SLMDGYCMQNRLSEANNMLDLMV 337



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 7/232 (3%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G A + +T N  I+ FC+      A  +   +   G     P   T+  +I  L    ++
Sbjct: 95  GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGY---EPDTTTFNTLINGLCLESKV 151

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E   L+  M+ +GC P+V TY  ++ G+C +G    A   L +M  +    D+ TY+  
Sbjct: 152 SEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTI 211

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC +   D A+ L+  M   G   S+ TYN L+    + G+ +   +   +M  R  
Sbjct: 212 IDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKI 271

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKF-DSYLMQ 456
             +V T+ V+ID      K++EA  L +E++ KG+    + Y    D Y MQ
Sbjct: 272 IPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQ 323



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 5/211 (2%)

Query: 252 EAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
           +A DLF E +R++      P+   ++     +    +          M  +G   ++ T 
Sbjct: 48  DAIDLFQEMIRSR----PLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTL 103

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++   C   K   AY  L ++   GY PD  T+N  +  LC      EA+ L  RM+E
Sbjct: 104 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC P+V TYN +++   + G+   A +   +MD+R    DV TY  +ID L     ++ 
Sbjct: 164 NGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDA 223

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           A  L +E+  KG+K     ++S +  L   G
Sbjct: 224 AISLFKEMETKGIKSSLVTYNSLVGGLCKAG 254



 Score = 38.5 bits (88), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%)

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y E L    +  K ++A    +EM      P +V ++ F   +   K  +  L    +M 
Sbjct: 33  YGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKME 92

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G   ++ T N++I+ +    +   A+    ++ K G   D  T+  +I+GL   SKV 
Sbjct: 93  LNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVS 152

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           EA  L+  +V  G +     ++S +  +   GD
Sbjct: 153 EAVVLVARMVENGCQPNVVTYNSIVNGICKSGD 185


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 141/317 (44%), Gaps = 16/317 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN--ILGM------- 219
           K    P +   N L+DA CK   V  A  + + +    V  N  +YN  I G+       
Sbjct: 235 KEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMS 294

Query: 220 ---QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              + +EEM   G  PD  TYNT ++ FCK   + +   L   M  KG    SP   TY 
Sbjct: 295 EVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGL---SPNVVTYT 351

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  + +   +     +   M   G  P+  TY  +++G C  G + EAYK L EM   
Sbjct: 352 TLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVS 411

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+ P +VTYN  +   C      EA+ +   M+E G  P V +Y+ +I+ +    E   A
Sbjct: 412 GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKA 471

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
           F+   EM ++G   D  TY  +I GL    K+ EA  L  E++ +GL      + S +  
Sbjct: 472 FQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINA 531

Query: 457 LSVIGDLGAIHKLSDHM 473
             V G+L    +L D M
Sbjct: 532 YCVDGELSKALRLHDEM 548



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 133/303 (43%), Gaps = 51/303 (16%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N +++ LC  G +     + + ++ K + P+  TYN L            G+  L EM+ 
Sbjct: 281 NSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVG 340

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G +P+  TY T I+  CKA  ++ A ++F+ MR +G     P  +TY  +I    Q   
Sbjct: 341 KGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGL---RPNERTYTTLIDGFCQKGL 397

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL----------------- 330
           M E + +L  MI SG  P V TY  ++ G C  G+V+EA   L                 
Sbjct: 398 MNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYST 457

Query: 331 ------------------EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
                             EEM  KG  PD VTY+  ++ LC  +   EA  L+  M+  G
Sbjct: 458 VIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG 517

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P   TY  LI+ Y   GE   A     EM +RG   D  TY V+I+GL   ++ + A 
Sbjct: 518 LPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAK 577

Query: 433 FLL 435
            LL
Sbjct: 578 RLL 580



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 164/398 (41%), Gaps = 40/398 (10%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ---DNYAHEPLAYNLMIDILSST 128
           L SL    T  +   VL   Q +++    F  WA  Q    N+   P    L + IL   
Sbjct: 30  LASLSPHFTPQAASYVLLNSQSDQRTLLNFLTWAQAQAQAHNFFFTPHCKCLALHIL--- 86

Query: 129 KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINA--LNLLLDA 186
             + K +R   S+   +       +P      + +   +   + + P  ++   +L++ +
Sbjct: 87  -VRFKLYRTAHSLAADLAAT----LPDPTGASLFRHLHDTFHLCSSPFSSSAVFDLVVKS 141

Query: 187 LCKCGLVDYAETICKRV-KNKVKPNANTYNIL-----------------GMQTLEEMIQM 228
           L + G V  A T+     ++   P   +YN +                   +   +M++ 
Sbjct: 142 LSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRN 201

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADL---FEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           G +P+ +TYN  I      R V    DL     FMR       SP   TY  +I A  + 
Sbjct: 202 GVSPNVYTYNVII------RGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKK 255

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +++E  +LL  M   G   ++ +Y  V+ G+C  G++ E  + +EEM  KG  PD VTY
Sbjct: 256 KKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTY 315

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +   C   N  + L L   M+  G  P+V TY  LI+   + G    A E + +M  
Sbjct: 316 NTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRV 375

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           RG   +  TY  +IDG      + EA  +L E++  G 
Sbjct: 376 RGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGF 413



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 124/296 (41%), Gaps = 37/296 (12%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P       L+D  C+ GL++ A + + + + +   P+  TYN L             + 
Sbjct: 379 RPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVG 438

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  M++ G  PD  +Y+T I  FC+ R + +A  + E M  KG     P   TY+ +I 
Sbjct: 439 ILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVL---PDTVTYSSLIQ 495

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    ++ E F L   M+  G  PD  TY  ++   C+ G++ +A +  +EM  +G+ P
Sbjct: 496 GLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLP 555

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS--------------- 385
           D VTY+  +  L        A RL  ++      P   TYN LI                
Sbjct: 556 DNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVK 615

Query: 386 ---MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
              M   + E D  F+T   M +R    +   Y +MI G      V +A  L  E+
Sbjct: 616 GFCMKGLMNEADRVFKT---MLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMEL 668



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 9/265 (3%)

Query: 229 GHAPDNFTYNTAIDTFCKA-----RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           G AP   +YN  +D   +      R   +A  +F  M   G    SP   TY ++I  +V
Sbjct: 162 GFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGV---SPNVYTYNVIIRGVV 218

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
               +E+    +  M   G  P+V TY  +++  C   KV+EA   L  M   G   +++
Sbjct: 219 SQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLI 278

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           +YN  +  LC      E   L   M   G  P   TYN L++ + + G          EM
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             +G + +V TY  +I+ +     +  A  + +++  +GL+   R + + +      G +
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLM 398

Query: 464 GAIHK-LSDHMRKFYNPVIARRLAL 487
              +K LS+ +   ++P +    AL
Sbjct: 399 NEAYKVLSEMIVSGFSPSVVTYNAL 423



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 14/246 (5%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN--------DRM 288
           ++  + +  +   V +A  L       G    +PT  +Y  ++ AL++         D  
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGF---APTVLSYNAVLDALLRRSSSNHRDYDDA 191

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E  F     M+ +G  P+V TY  ++ G+   G +E+   F+ +M  +G  P++VTYN  
Sbjct: 192 ERVFR---DMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTL 248

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C  K   EA+ L   M   G   ++ +YN +I+     G      E   EM  +G 
Sbjct: 249 IDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGL 308

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D  TY  +++G      + +   LL E+V KGL      + + +  +   G+L    +
Sbjct: 309 VPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVE 368

Query: 469 LSDHMR 474
           + D MR
Sbjct: 369 IFDQMR 374



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 99/274 (36%), Gaps = 33/274 (12%)

Query: 167 EKIKVKTQPEINALNLLLDALC-KCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
           E ++    P+    + L+  LC +  LV+  +   + ++  + P+  TY  L        
Sbjct: 477 EMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDG 536

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCK-ARMVTEAADLFEFMRTKGSTISSPTA 272
                ++  +EM+Q G  PDN TY+  I+   K AR       L +    +    S P  
Sbjct: 537 ELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEE----SVPDD 592

Query: 273 KTYAIMIVALVQND---------------RMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
            TY  +I     N+                M E   +   M+     P+ + Y  ++ G 
Sbjct: 593 VTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGH 652

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
              G V +AY    E+ +  +    V     +K L      DE  RL   ++        
Sbjct: 653 SRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDA 712

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           +   +L+ + F+ G  D       EM K G   D
Sbjct: 713 KVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 148/303 (48%), Gaps = 19/303 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D+ L +LK+     K K + ++     ++DALC    V+ A  +   + NK ++PN  T
Sbjct: 220 IDLALSLLKKME---KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 276

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              + L +MI+    P+  T++  ID F K   + EA  L++ M 
Sbjct: 277 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 336

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +      P   TY+ +I     +DR++E   +   MI+  C P+V TY  +++G C A 
Sbjct: 337 KRSI---DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 393

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +VEE  +   EM  +G   + VTYN  ++ L    + D A +++ +M+  G  P + TY+
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 453

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+    + G+ + A   +  + K     D+ TY +MI+G+    KVE+   L   +  K
Sbjct: 454 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 513

Query: 442 GLK 444
           G+K
Sbjct: 514 GVK 516



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E ++ +  P I   N LL A+ K    D   ++ +R++N ++  +  +YNIL      
Sbjct: 52  FGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCR 111

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ PD  T ++ ++ +C  + ++EA  L + M         P 
Sbjct: 112 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY---QPN 168

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G ++ A   L+
Sbjct: 169 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 228

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M       D+V Y   +  LC+ KN ++AL L+  M   G  P+V TYN LI      G
Sbjct: 229 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 288

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    +V T+  +ID      K+ EA  L +E++ + +
Sbjct: 289 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 340



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 133/276 (48%), Gaps = 16/276 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++     +++ LCK G +D A ++ K++ K K++ +   Y  +             + 
Sbjct: 201 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 260

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM   G  P+  TYN+ I   C     ++A+ L   M  +     +P   T++ +I 
Sbjct: 261 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI---NPNVVTFSALID 317

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A V+  ++ E   L   MI     PD+ TY  ++ G C+  +++EA    E M +K   P
Sbjct: 318 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 377

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  +K  C  K  +E + L+  M + G   +  TYN LI   F+ G+ D A + +
Sbjct: 378 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 437

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
            +M   G   D+ TY +++DGL    K+E+A  + E
Sbjct: 438 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 473



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 16/326 (4%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
           L  +TE      +P +   N L+  LC  G   D +  +   ++ K+ PN  T++ L   
Sbjct: 259 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 318

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +  +EMI+    PD FTY++ I+ FC    + EA  +FE M +K     
Sbjct: 319 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-- 376

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I    +  R+EE   L   M   G + +  TY  +++G+  AG  + A K
Sbjct: 377 -PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 435

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M + G PPDI+TY+  L  LC     ++AL ++  + +    P + TYN++I    
Sbjct: 436 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 495

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G+ +  ++ +  +  +G   +V  Y  MI G       EEA  L  E+   G      
Sbjct: 496 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSG 555

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMR 474
            +++ +      GD  A  +L   MR
Sbjct: 556 TYNTLIRARLRDGDKAASAELIKEMR 581



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 148/339 (43%), Gaps = 26/339 (7%)

Query: 109 DNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVL 158
           DN    P  + YN +I  L +    +   RL+  M++     N V        FV    L
Sbjct: 266 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 325

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
           +   K Y E IK    P+I   + L++  C    +D A+ + + + +K   PN  TYN L
Sbjct: 326 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                       GM+   EM Q G   +  TYNT I    +A     A  +F+ M + G 
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY+I++  L +  ++E+   +  ++  S   PD+ TY  ++EGMC AGKVE+
Sbjct: 446 ---PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVED 502

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
            +     +  KG  P+++ Y   +   C     +EA  L+  M E G  P+  TYN LI 
Sbjct: 503 GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 562

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
                G+   + E   EM   G   D  T  ++I+ L D
Sbjct: 563 ARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 601



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 51/323 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           +K+  +P+I  L+ LL+  C    +  A  +  ++   + +PN  T+N L          
Sbjct: 126 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 185

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  ++ M+  G  PD FTY T ++  CK   +  A  L + M  KG          Y
Sbjct: 186 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME-KGKI--EADVVIY 242

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----------------- 318
             +I AL     + +  +L   M N G  P+V TY  ++  +C                 
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 302

Query: 319 ------------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                               GK+ EA K  +EM  +   PDI TY+  +   C +   DE
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 362

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  ++  MI   C+P+V TYN LI  + +    +   E + EM +RG   +  TY  +I 
Sbjct: 363 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 422

Query: 421 GLFDCSKVEEACFLLEEVVNKGL 443
           GLF     + A  + +++V+ G+
Sbjct: 423 GLFQAGDCDMAQKIFKKMVSDGV 445



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 16/298 (5%)

Query: 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN---TAIDTFCKARMV 250
           DY E + + V   +K + +  ++ G     EM+Q    P    +N   +AI    K  +V
Sbjct: 30  DYREKLSRNVLLDLKLD-DAVDLFG-----EMVQSRPLPSIVEFNKLLSAIAKMNKFDLV 83

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
               +  + +R       S    +Y I+I    +  ++    ++LG M+  G  PD+ T 
Sbjct: 84  ISLGERMQNLRI------SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTL 137

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +L G C   ++ EA   +++M    Y P+ VT+N  +  L  +    EA+ L  RM+ 
Sbjct: 138 SSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVA 197

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC P + TY  +++   + G+ D A     +M+K     DV  Y  +ID L +   V +
Sbjct: 198 RGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVND 257

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
           A  L  E+ NKG++     ++S +  L   G    A   LSD + +  NP +    AL
Sbjct: 258 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 315



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  L + G  D A+ I K+ V + V P+  TY+IL             +   E + +
Sbjct: 418 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 477

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +   
Sbjct: 478 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV---KPNVIIYTTMISGFCRKGL 534

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            EE  +L   M   G LP+  TY  ++      G    + + ++EM + G+  D  T + 
Sbjct: 535 KEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISM 594

Query: 348 FLKVLCDNK 356
            + +L D +
Sbjct: 595 VINMLHDGR 603


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 155/359 (43%), Gaps = 38/359 (10%)

Query: 103 MWAGHQDNYAHEP----LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158
           MW  + D  A       + Y  +ID         K FRL   M++      K+F  V + 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE-----KKIFPTVVIY 231

Query: 159 LMILKQYTEKIKVKTQ-------------PEINALNLLLDALCKCGLVDYA-ETICKRVK 204
            ++++    + ++                P +   N ++D  CK   V  A E   + + 
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291

Query: 205 NKVKPNANTYNIL--GMQTLEEMIQ----------MGHAPDNFTYNTAIDTFCKARMVTE 252
           + + PN  T+ IL  G+   +EM+            G  P+ F YN  ID +CKA  ++E
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE 351

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  L   +         P   TY+I+I  L   DRMEE   LL  M   G LP+  TY  
Sbjct: 352 ALSLHSEIEKHEIL---PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++G C  G +E+A +   +M  KG  P+I+T++  +   C     + A+ LY  M+  G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             P V  Y  LI  +F+ G    AF    EM + G   +V T   +IDGL    ++ +A
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 161/376 (42%), Gaps = 54/376 (14%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAK----------------QFRLVCSM 141
           A   F     + + A  P  Y+ +I +L+  K  AK                + R+ CS+
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 142 LDYMKR-NNKVFVPVDVLLMILKQYTEK----------IKVKTQPEINALNLLLDALCKC 190
            + + R  +  F P +V  +++  ++E            K+   P + A N++LD L K 
Sbjct: 113 FNVLSRLESSKFTP-NVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKK 171

Query: 191 GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           G  D                   + + G     +M+  G +P+  TY T ID  C+    
Sbjct: 172 GRFD-----------------TMWKVYG-----DMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A  LF+ M  K      PT   Y I+I  L    R+ E  S+   M NSG LP++ TY
Sbjct: 210 LKAFRLFDEMIEKKIF---PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTY 266

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G C    V++A +  +EM   G  P++VT+   +  LC       A +    M  
Sbjct: 267 NTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P++  YN LI  Y + G    A     E++K     DV TY ++I GL    ++EE
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386

Query: 431 ACFLLEEVVNKGLKLP 446
           A  LL+E+  KG  LP
Sbjct: 387 ADGLLQEMKKKGF-LP 401



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 138/299 (46%), Gaps = 16/299 (5%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
            L   + + E I+ K  P +    +L+  LC    +  AE++ + ++N  + PN  TYN 
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNT 268

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +             ++  +EM+  G  P+  T+   ID  CK   +  A      M + G
Sbjct: 269 MMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P    Y  +I    +   + E  SL   +     LPDV TY  +++G+C   ++E
Sbjct: 329 VV---PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EA   L+EM  KG+ P+ VTYN  +   C   N ++A+ +  +M E G  P++ T++ LI
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             Y + G+ + A   + EM  +G   DV  Y  +IDG F     +EA  L +E+   GL
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 16/204 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-----GMQTLEE---- 224
           P I   N L+D  CK G +  A ++   + K+++ P+  TY+IL     G+  +EE    
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M + G  P+  TYNT ID +CK   + +A ++   M  KG     P   T++ +I  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI---EPNIITFSTLIDG 447

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME    L   M+  G LPDV  Y  +++G    G  +EA++  +EM   G  P+
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 342 IVTYNCFLKVLCDNKNGDEALRLY 365
           + T +C +  LC +    +A++L+
Sbjct: 508 VFTLSCLIDGLCKDGRISDAIKLF 531


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 17/294 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKV-KPNANTY-NILGMQTLE 223
           E ++   +P +     L+D LCK G  + A     K V++   KPN +TY +++G    E
Sbjct: 312 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKE 371

Query: 224 E-----------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
           +           M + G  P+  TY T I+  CKA     A +L   M  +G     P  
Sbjct: 372 DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFM---PNI 428

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY   I +L +  R  E + LL    + G   D  TY  +++  C    + +A  F   
Sbjct: 429 YTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 488

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G+  D+   N  +   C  K   E+ RL+  ++ +G  P+ +TY  +IS Y + G+
Sbjct: 489 MNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGD 548

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            D A + +H M + GC  D  TY  +I GL   S V+EAC L E ++++GL  P
Sbjct: 549 IDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPP 602



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 185/434 (42%), Gaps = 42/434 (9%)

Query: 27  QSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVG 86
           Q  +  V SLVC  +   +  VS   ++                 LD     LT +  + 
Sbjct: 53  QCLVKSVCSLVCTSYLRQNHVVSSPHRV----------------NLDFDANSLTHEQAIT 96

Query: 87  VLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY 144
           V+     E    +A  FF WA   + + H    Y +  D L +     K   ++  ML  
Sbjct: 97  VVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLRN 156

Query: 145 MKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
                ++   V +++ +  Q          P    +N +L+   + GL++YAE +   + 
Sbjct: 157 FSEIGRLNEAVGMVMDMQNQ-------GLTPSSITMNCVLEIAVELGLIEYAENVFDEMS 209

Query: 205 NK-VKPNANTYNILGM------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
            + V P++++Y ++ +            + L  MIQ G  PDN T    +   C+  +V 
Sbjct: 210 VRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVN 269

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
            A   F  M   G     P    +  +I  L +   +++ F +L  M+ +G  P+V T+ 
Sbjct: 270 RAIWYFRKMIDLG---FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHT 326

Query: 312 EVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
            +++G+C  G  E+A++ FL+ + +  Y P++ TY   +   C     + A  L+ RM E
Sbjct: 327 ALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKE 386

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G +P+V TY  LI+ + + G    A+E  + M   G   ++ TY   ID L   S+  E
Sbjct: 387 QGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPE 446

Query: 431 ACFLLEEVVNKGLK 444
           A  LL +  + GL+
Sbjct: 447 AYELLNKAFSCGLE 460



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 137/314 (43%), Gaps = 15/314 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+     L+L ALC+ GLV+ A    +++ +   KPN   +  L              + 
Sbjct: 250 PDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 309

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM++ G  P+ +T+   ID  CK     +A  LF  ++   S    P   TY  MI  
Sbjct: 310 LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF--LKLVRSDTYKPNVHTYTSMIGG 367

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + D++     L   M   G  P+V+TY  ++ G C AG    AY+ +  MG++G+ P+
Sbjct: 368 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 427

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I TYN  +  LC      EA  L  +    G      TY +LI    +  + + A   + 
Sbjct: 428 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 487

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M+K G   D+    ++I       K++E+  L + VV+ GL      + S +      G
Sbjct: 488 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEG 547

Query: 462 DLGAIHKLSDHMRK 475
           D+    K   +M++
Sbjct: 548 DIDLALKYFHNMKR 561



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 118/313 (37%), Gaps = 48/313 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P ++    ++   CK   ++ AE +  R+K + + PN NTY  L              +
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYE 414

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE---------------------- 258
            +  M   G  P+ +TYN AID+ CK     EA +L                        
Sbjct: 415 LMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQC 474

Query: 259 ----------FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                     F      T      +   I+I A  +  +M+E   L   +++ G +P   
Sbjct: 475 KQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKE 534

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++   C  G ++ A K+   M   G  PD  TY   +  LC     DEA +LY  M
Sbjct: 535 TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 594

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           I+ G  P   T   L   Y +  +   A      +DK+   + V T   ++  L    KV
Sbjct: 595 IDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRT---LVRKLCSEKKV 651

Query: 429 EEACFLLEEVVNK 441
             A    ++++ K
Sbjct: 652 GVAALFFQKLLEK 664



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G++ EA   + +M N+G  P  +T NC L++  +    + A  ++  M   G  P   +Y
Sbjct: 161 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 220

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            +++   F  G+   A      M +RG   D  T  +++  L +   V  A +   ++++
Sbjct: 221 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 280

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
            G K     F S +  L   G +  A   L + +R  + P +    AL
Sbjct: 281 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTAL 328


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 45/342 (13%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------- 217
           E + +  +P+I + N+++D LCK G++  A  +    ++N + P+  TY+ L        
Sbjct: 351 EMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKG 410

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   L EMI    +P+ +T N  + +  K   ++EA +L + M  KG  + + T  
Sbjct: 411 KVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCN 470

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSG-----------------------CLPDVSTY 310
              I+I AL  N ++++   ++  M   G                       C PD+ TY
Sbjct: 471 ---IIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTY 527

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G+C AG++++A K   EM +KG  PD   Y+ F+   C       A ++   M +
Sbjct: 528 STIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEK 587

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETW---HEMDKRGCAQDVDTYCVMIDGLFDCSK 427
            GC  ++QTYN LI     LG  +  FE +    EM ++G + DV TY  M++ L +  +
Sbjct: 588 RGCNKTLQTYNSLI---LGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGR 644

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           + +A  +L+E++ KG+      F   +       D  A H++
Sbjct: 645 INDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEV 686



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 138/327 (42%), Gaps = 49/327 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y + +  +  PE    NLL+  LC  G L D  E   K      +PN  T+ IL      
Sbjct: 135 YKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCR 194

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------- 264
                 G++ L +M  MG  P+N  YNT I +FCK     +A  L + MR  G       
Sbjct: 195 AGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVET 254

Query: 265 --STISS---------------------------PTAKTYAIMIVALVQNDRMEECFSLL 295
             S IS+                           P   TY +M++   +   +EE  +L+
Sbjct: 255 FNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLV 314

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M  +    ++ +Y   L G+   GK+ EA+  L+EM   G  PDI +YN  +  LC N
Sbjct: 315 DTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKN 374

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
               +A  L G MI  G  P   TY+ L+  Y   G+   A    HEM    C+ +  T 
Sbjct: 375 GMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTC 434

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKG 442
            V++  L+   ++ EA  LL+++  KG
Sbjct: 435 NVLLHSLWKEGRISEAENLLQKMNEKG 461



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 26/278 (9%)

Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN-----------------ILGMQTL 222
           N L+ + CK G    AE +  +++ + + P+  T+N                 I     +
Sbjct: 221 NTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQI 280

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +E + + H P+  TY   +  FCK  M+ EA  L + M+   + I+    ++Y I ++ L
Sbjct: 281 DEELGLPH-PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFIN---LESYNIWLLGL 336

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           ++N ++ E + +L  M+  G  PD+ +Y  V++G+C  G + +A   +  M   G  PD 
Sbjct: 337 IRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDT 396

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY+  L   C      EA  L   MI   C P+  T N+L+   ++ G    A     +
Sbjct: 397 VTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQK 456

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           M+++G   D  T  ++I+ L +  ++++A     E+VN
Sbjct: 457 MNEKGYGVDTVTCNIIINALCNNGQLDKAI----EIVN 490



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 141/328 (42%), Gaps = 13/328 (3%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH-APDNFTYNT 239
           N++++ALC  G +D A  I   +               +  +++ I      PD  TY+T
Sbjct: 470 NIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYST 529

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I   CKA  + +A   F  M +KG     P +  Y   I +  +  ++   F +L  M 
Sbjct: 530 IISGLCKAGRLDDAKKKFIEMMSKGL---QPDSAIYDTFIHSFCREGKISSAFQVLKDME 586

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             GC   + TY  ++ G+    ++ E Y  ++EM  KG  PD+ TYN  L  LC+    +
Sbjct: 587 KRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRIN 646

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +A  +   M++ G  P++ ++ +LI  + +  +   + E + E+    C      Y +M 
Sbjct: 647 DAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEVF-EIALNVCGHKEALYTLMF 705

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA----IHKLSDHMRK 475
           + L    KV EA  L E  +++   +    +   + +L     L A    +H+L D   +
Sbjct: 706 NELLVGGKVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQ 765

Query: 476 F----YNPVIARRLALNQKRVRISLREK 499
           F    + PVI     +  K V   L E+
Sbjct: 766 FDPASFMPVIDGFGKMGNKHVADELAER 793



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 129/302 (42%), Gaps = 26/302 (8%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
           K  P++   + ++  LCK G +D A+                      +   EM+  G  
Sbjct: 519 KCTPDLVTYSTIISGLCKAGRLDDAK----------------------KKFIEMMSKGLQ 556

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD+  Y+T I +FC+   ++ A  + + M  +G    + T +TY  +I+ L   +++ E 
Sbjct: 557 PDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGC---NKTLQTYNSLILGLGSKNQIFEL 613

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           + L+  M   G  PDV TY  +L  +C  G++ +A   L+EM  KG  P+I ++   +K 
Sbjct: 614 YGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKA 673

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C   +   +  ++   + V C      Y ++ +     G+   A E +     R     
Sbjct: 674 FCKACDFKASHEVFEIALNV-CGHKEALYTLMFNELLVGGKVAEAKELFETALDRSFDIG 732

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
              Y  +ID L    K+E A  +L  +++KG +     F   +     +G+     +L++
Sbjct: 733 NFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADELAE 792

Query: 472 HM 473
            M
Sbjct: 793 RM 794



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 21/290 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           QP I   N+LL +  +   V+    + K  V  +V P A T+N+L              +
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++M   G  P+ FT+   +  +C+A + ++  +L   MRT G     P    Y  +I 
Sbjct: 169 LFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGIL---PNNVLYNTLIS 225

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG---NKG 337
           +  +  +  +   L+  M   G +P V T+   +  +C +GK+ EA +   +M      G
Sbjct: 226 SFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELG 285

Query: 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
            P P+++TY   L   C     +EA  L   M     + ++++YN+ +      G+   A
Sbjct: 286 LPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEA 345

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +    EM   G   D+ +Y +++DGL     + +A  L+  ++  G+ LP
Sbjct: 346 WIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGI-LP 394



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 5/242 (2%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +    K+    +A   F+ +R+       P+   Y +++ + ++ +R+E    L   M+ 
Sbjct: 82  VTVLAKSGFFNKAISHFKSLRSNFPE-KQPSIYLYNVLLKSCIRENRVELVSWLYKDMVL 140

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +   P+  T+  ++  +C +G +E+A +  ++M  +G  P+  T+   ++  C      +
Sbjct: 141 ARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASK 200

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
            L L G+M  +G  P+   YN LIS + + G+   A +   +M + G    V+T+   I 
Sbjct: 201 GLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRIS 260

Query: 421 GLFDCSKVEEACFLLEEV-VNKGLKLPYRKFDSY---LMQLSVIGDLGAIHKLSDHMRKF 476
            L    K+ EA  +  ++ +++ L LP+    +Y   LM     G L     L D M++ 
Sbjct: 261 ALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRN 320

Query: 477 YN 478
            N
Sbjct: 321 AN 322



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 17/254 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILGM 219
           K++ E +    QP+    +  + + C+ G +  A  + K + K        TYN  ILG+
Sbjct: 545 KKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGL 604

Query: 220 QT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
            +          ++EM + G +PD  TYN  ++  C+   + +A  + + M  KG    S
Sbjct: 605 GSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGI---S 661

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   ++ I+I A  +    +    +    +N  C    + Y  +   + + GKV EA + 
Sbjct: 662 PNISSFRILIKAFCKACDFKASHEVFEIALNV-CGHKEALYTLMFNELLVGGKVAEAKEL 720

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            E   ++ +      Y   +  LC ++  + A  +  R+I+ G      ++  +I  + +
Sbjct: 721 FETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGK 780

Query: 390 LGEPDGAFETWHEM 403
           +G    A E    M
Sbjct: 781 MGNKHVADELAERM 794



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 6/188 (3%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P +  Y  +L+      +VE      ++M      P+  T+N  + +LCD+ + ++A  L
Sbjct: 110 PSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDAREL 169

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           + +M   GC P+  T+ +L+  Y   G      E   +M   G   +   Y  +I     
Sbjct: 170 FDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCK 229

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARR 484
             K  +A  L++++   GL      F+S +  L   G      K+ +  R F +  I   
Sbjct: 230 EGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSG------KILEASRIFRDMQIDEE 283

Query: 485 LALNQKRV 492
           L L    V
Sbjct: 284 LGLPHPNV 291


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 148/303 (48%), Gaps = 19/303 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D+ L +LK+     K K + ++     ++DALC    V+ A  +   + NK ++PN  T
Sbjct: 236 IDLALSLLKKME---KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              + L +MI+    P+  T++  ID F K   + EA  L++ M 
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +      P   TY+ +I     +DR++E   +   MI+  C P+V TY  +++G C A 
Sbjct: 353 KRSI---DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +VEE  +   EM  +G   + VTYN  ++ L    + D A +++ +M+  G  P + TY+
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+    + G+ + A   +  + K     D+ TY +MI+G+    KVE+   L   +  K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 442 GLK 444
           G+K
Sbjct: 530 GVK 532



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E ++ +  P I   N LL A+ K    D   ++ +R++N ++  +  +YNIL      
Sbjct: 68  FGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCR 127

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ PD  T ++ ++ +C  + ++EA  L + M         P 
Sbjct: 128 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY---QPN 184

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G ++ A   L+
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M       D+V Y   +  LC+ KN ++AL L+  M   G  P+V TYN LI      G
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    +V T+  +ID      K+ EA  L +E++ + +
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 133/276 (48%), Gaps = 16/276 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++     +++ LCK G +D A ++ K++ K K++ +   Y  +             + 
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM   G  P+  TYN+ I   C     ++A+ L   M  +     +P   T++ +I 
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI---NPNVVTFSALID 333

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A V+  ++ E   L   MI     PD+ TY  ++ G C+  +++EA    E M +K   P
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  +K  C  K  +E + L+  M + G   +  TYN LI   F+ G+ D A + +
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
            +M   G   D+ TY +++DGL    K+E+A  + E
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 16/326 (4%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
           L  +TE      +P +   N L+  LC  G   D +  +   ++ K+ PN  T++ L   
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +  +EMI+    PD FTY++ I+ FC    + EA  +FE M +K     
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-- 392

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I    +  R+EE   L   M   G + +  TY  +++G+  AG  + A K
Sbjct: 393 -PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M + G PPDI+TY+  L  LC     ++AL ++  + +    P + TYN++I    
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G+ +  ++ +  +  +G   +V  Y  MI G       EEA  L  E+   G      
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSG 571

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMR 474
            +++ +      GD  A  +L   MR
Sbjct: 572 TYNTLIRARLRDGDKAASAELIKEMR 597



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 148/339 (43%), Gaps = 26/339 (7%)

Query: 109 DNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVL 158
           DN    P  + YN +I  L +    +   RL+  M++     N V        FV    L
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
           +   K Y E IK    P+I   + L++  C    +D A+ + + + +K   PN  TYN L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                       GM+   EM Q G   +  TYNT I    +A     A  +F+ M + G 
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY+I++  L +  ++E+   +  ++  S   PD+ TY  ++EGMC AGKVE+
Sbjct: 462 ---PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVED 518

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
            +     +  KG  P+++ Y   +   C     +EA  L+  M E G  P+  TYN LI 
Sbjct: 519 GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
                G+   + E   EM   G   D  T  ++I+ L D
Sbjct: 579 ARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 51/323 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           +K+  +P+I  L+ LL+  C    +  A  +  ++   + +PN  T+N L          
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 201

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  ++ M+  G  PD FTY T ++  CK   +  A  L + M  KG          Y
Sbjct: 202 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME-KGKI--EADVVIY 258

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----------------- 318
             +I AL     + +  +L   M N G  P+V TY  ++  +C                 
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 319 ------------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                               GK+ EA K  +EM  +   PDI TY+  +   C +   DE
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  ++  MI   C+P+V TYN LI  + +    +   E + EM +RG   +  TY  +I 
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438

Query: 421 GLFDCSKVEEACFLLEEVVNKGL 443
           GLF     + A  + +++V+ G+
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGV 461



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 16/298 (5%)

Query: 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN---TAIDTFCKARMV 250
           DY E + + V   +K + +  ++ G     EM+Q    P    +N   +AI    K  +V
Sbjct: 46  DYREKLSRNVLLDLKLD-DAVDLFG-----EMVQSRPLPSIVEFNKLLSAIAKMNKFDLV 99

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
               +  + +R       S    +Y I+I    +  ++    ++LG M+  G  PD+ T 
Sbjct: 100 ISLGERMQNLRI------SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTL 153

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +L G C   ++ EA   +++M    Y P+ VT+N  +  L  +    EA+ L  RM+ 
Sbjct: 154 SSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVA 213

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC P + TY  +++   + G+ D A     +M+K     DV  Y  +ID L +   V +
Sbjct: 214 RGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVND 273

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
           A  L  E+ NKG++     ++S +  L   G    A   LSD + +  NP +    AL
Sbjct: 274 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  L + G  D A+ I K+ V + V P+  TY+IL             +   E + +
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +   
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV---KPNVIIYTTMISGFCRKGL 550

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            EE  +L   M   G LP+  TY  ++      G    + + ++EM + G+  D  T + 
Sbjct: 551 KEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISM 610

Query: 348 FLKVLCDNK 356
            + +L D +
Sbjct: 611 VINMLHDGR 619


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 19/280 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----------QT 221
           P I   N++++ +C+ G VD A     R+ +   +P+  +Y  +  G+          + 
Sbjct: 213 PNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEEL 272

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM++    P+  T++  +  FC+  MV  A  + E M   G   ++       I+I  
Sbjct: 273 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN---IVINT 329

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +  R+++ F  L +M + GC PD  +Y  VL+G+C A + E+A + L+EM  K  PP+
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N F+ +LC     ++A  L  +M E GC  ++ TYN L++ +   G  D A E ++
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 449

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            M    C  +  TY  ++ GL +  +++ A  LL E++ K
Sbjct: 450 SMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 486



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 32/343 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA---------------ETICKRVKNKVKP 209
           + E ++    P     ++L+   C+ G+V+ A                T+C  V N +  
Sbjct: 273 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 332

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                +    Q L  M   G +PD  +Y T +   C+A    +A +L + M  K      
Sbjct: 333 QGRVDD--AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNC---P 387

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T+   I  L Q   +E+   L+  M   GC  ++ TY  ++ G C+ G+V+ A + 
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL 447

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              M  K   P+ +TY   L  LC+ +  D A  L   M++  C P+V T+N+L+S + +
Sbjct: 448 FYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 504

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G  D A E   +M + GC  ++ TY  ++DG+      EEA  LL  +V+ G+      
Sbjct: 505 KGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVT 564

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRV 492
           +       S+IG L    ++ + ++ F+   I + L +  K V
Sbjct: 565 YS------SIIGVLSREDRVEEAIKMFH---IVQDLGMRPKAV 598



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 3/207 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           +  M  APD +TY   I   C    V EA  L + M  +G     P+  TY +++ A+ +
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGC---QPSVVTYTVLLEAVCK 192

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           +    +   +L  M   GC P++ TY  ++ GMC  G+V++A +FL  + + G+ PD V+
Sbjct: 193 STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVS 252

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   LK LC  K  ++   L+  M+E  C P+  T++ML+  +   G  + A +   +M 
Sbjct: 253 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS 312

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             GCA +     ++I+ +    +V++A
Sbjct: 313 GHGCAANTTLCNIVINTICKQGRVDDA 339



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 21/319 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------ 217
           +  T  ++ A N L+   C+ G +D A  +   +   V P+A TY  +            
Sbjct: 106 RSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--VAPDAYTYTPIIRGLCDRGRVGE 163

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L++M+  G  P   TY   ++  CK+    +A ++ + MR KG T   P   TY +
Sbjct: 164 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCT---PNIVTYNV 220

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  + +  R+++    L  + + G  PD  +Y  VL+G+C A + E+  +   EM  K 
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ VT++  ++  C     + A+++  +M   GC  +    N++I+   + G  D AF
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +  + M   GC+ D  +Y  ++ GL    + E+A  LL+E+V K        F++++  L
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 458 SVIGDLGA----IHKLSDH 472
              G +      I ++S+H
Sbjct: 401 CQKGLIEQATMLIEQMSEH 419



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------Q 220
           QP +    +LL+A+CK      A  +   ++ K   PN  TYN++  GM          +
Sbjct: 177 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 236

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  +   G  PD  +Y T +   C A+   +  +LF  M  K      P   T+ +++ 
Sbjct: 237 FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM---PNEVTFDMLVR 293

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +E    +L  M   GC  + +    V+  +C  G+V++A++FL  MG+ G  P
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D ++Y   LK LC  +  ++A  L   M+   C P+  T+N  I +  + G  + A    
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 413

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            +M + GC  ++ TY  +++G     +V+ A
Sbjct: 414 EQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM---- 219
           E ++    P     N  +  LC+ GL++ A  + +++ ++  + N  TYN L  G     
Sbjct: 380 EMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG 439

Query: 220 ---QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                LE    M   P+  TY T +   C A  +  AA+L   M  K     +P   T+ 
Sbjct: 440 RVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC---APNVVTFN 496

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++    Q   M+E   L+  M+  GC P++ TY  +L+G+      EEA + L  + + 
Sbjct: 497 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 556

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PDIVTY+  + VL      +EA++++  + ++G  P    YN ++    +    DGA
Sbjct: 557 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGA 616

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + +  M   GC  +  TY  +I+GL +   ++E   LL E+ ++G+
Sbjct: 617 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 34/216 (15%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +  + SSP      +    L+  D + E   L+    + G  PDV    +++  +C  
Sbjct: 34  RPEAPSASSPNPANARLR--RLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRR 91

Query: 321 GKVEEAYKFLEEMGNKG--------------------------------YPPDIVTYNCF 348
           G+  +A + L      G                                  PD  TY   
Sbjct: 92  GRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPI 151

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           ++ LCD     EAL L   M+  GC PSV TY +L+    +      A E   EM  +GC
Sbjct: 152 IRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC 211

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             ++ TY V+I+G+    +V++A   L  + + G +
Sbjct: 212 TPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ 247


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 172/389 (44%), Gaps = 35/389 (8%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
            DS   P+    ++  L+    + K+A +FF WAG Q  + H   +Y +++ ++    ++
Sbjct: 64  FDSALAPIWVSKILLGLRE---DPKLALKFFKWAGSQVGFRHTTESYCIIVHLV----FR 116

Query: 132 AKQFRLVCSMLDYMKRNNKV---FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
           A+ +      +  +  N+++   F   ++  M+    T  I V         ++L     
Sbjct: 117 ARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWS--TRNICVSGS---GVFDVLFSVFV 171

Query: 189 KCGLVDYAETICKRVKN-KVKPNANTYNILGMQT------------LEEMIQMGHAPDNF 235
           + GL++ A     R++N +  P A + N L  +               +MI  G AP  F
Sbjct: 172 ELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVF 231

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TYN  ID  CK   +  +  LF  MR  G    SP   TY  +I    +   +EE  SL 
Sbjct: 232 TYNVMIDYLCKEGDLENSRRLFVQMREMGL---SPDVVTYNSLIDGYGKVGSLEEVASLF 288

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M + GC+PD+ TY  ++   C   K+  A+++  EM N G  P++VTY+  +   C  
Sbjct: 289 NEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKE 348

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
                A++L   M   G  P+  TY  LI    + G    A++  ++M + G   ++ TY
Sbjct: 349 GMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTY 408

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             ++DGL    ++ EA    EEV    LK
Sbjct: 409 TALLDGLCKAGRMIEA----EEVFRSMLK 433



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 140/297 (47%), Gaps = 16/297 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL- 217
           ++ K + + I     P +   N+++D LCK G ++ +  +  +++   + P+  TYN L 
Sbjct: 213 LVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLI 272

Query: 218 ----GMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                + +LEE       M  +G  PD  TYN  I+ +CK   +  A + F  M+  G  
Sbjct: 273 DGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGL- 331

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY+ +I A  +   M+    LL  M  +G LP+  TY  +++  C AG + EA
Sbjct: 332 --KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEA 389

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           +K L +M   G   +IVTY   L  LC      EA  ++  M++ G  P+ Q Y  L+  
Sbjct: 390 WKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHG 449

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y +    + A +   +M +     D+  Y  +I G     K+EE   +LEE+ ++G+
Sbjct: 450 YIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 506



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 159/384 (41%), Gaps = 24/384 (6%)

Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKV--FVPVDVLLMILK 163
           A     YN+MID L          RL   M       D +  N+ +  +  V  L  +  
Sbjct: 227 APSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVAS 286

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----- 217
            + E   V   P+I   N L++  CK   +  A E   +   N +KPN  TY+ L     
Sbjct: 287 LFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFC 346

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   ++ L +M + G  P+ FTY + ID  CKA  +TEA  L   M   G  ++  
Sbjct: 347 KEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLN-- 404

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY  ++  L +  RM E   +   M+  G  P+   Y  ++ G   A ++E+A K L
Sbjct: 405 -IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKIL 463

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           ++M      PD++ Y   +   C  +  +E   +   M   G   +      +I  YF+ 
Sbjct: 464 KQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKA 523

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+   A   + EM   G    + TYCV+IDGL +   VE A      +++ GL+     +
Sbjct: 524 GKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVY 583

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMR 474
            S +  L     + +  KL D M+
Sbjct: 584 TSLIDGLCXNNCIESAKKLFDEMQ 607



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   + L+DA CK G++  A + +    +  + PN  TY  L              +
Sbjct: 332 KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 391

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M+Q G   +  TY   +D  CKA  + EA ++F  M   G    SP  + Y  ++ 
Sbjct: 392 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI---SPNQQVYTALVH 448

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             ++ +RME+   +L  M      PD+  Y  ++ G C   K+EE    LEEM ++G   
Sbjct: 449 GYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 508

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + V     +          +AL  +  M +VG   ++ TY +LI    E G  + A + +
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYF 568

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             M   G   +V  Y  +IDGL   + +E A  L +E+  +G+
Sbjct: 569 CRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM 611



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 141/330 (42%), Gaps = 19/330 (5%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           LLD LCK G +  AE + +  +K+ + PN   Y  L             M+ L++M +  
Sbjct: 411 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN 470

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD   Y + I   C  R + E   + E M+++G + ++P   T   +I A  +  +  
Sbjct: 471 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGIS-ANPVIST--TIIDAYFKAGKSS 527

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +  +    M + G    + TY  +++G+C AG VE A  +   M + G  P++  Y   +
Sbjct: 528 DALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLI 587

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC N   + A +L+  M   G  P +  +  LI    + G    A      M +    
Sbjct: 588 DGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIE 647

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF-DSYLMQLSVIGDLGAIHK 468
            D+  Y  ++ G   C ++ +A     E++ KG+ LP        L +    G L    +
Sbjct: 648 FDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGI-LPEEVLCICLLREYYKRGQLDEAIE 706

Query: 469 LSDHM-RKFYNPVIARRLALNQKRVRISLR 497
           L + M R  Y+     +LA N++ V ++L 
Sbjct: 707 LKNEMERMAYSFEFDAQLAYNEQGVNLTLH 736


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 138/282 (48%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
           +P++   N+L+D LCK G +  A  +    +K  V  N  TYN L               
Sbjct: 271 KPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATF 330

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M + G  PD  +Y+  I+  CK +MV EA +LF+ M +K     +P   TY  +I 
Sbjct: 331 VFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM---APNTVTYNSLID 387

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L++  R+ + + L+  M N G   DV TY  +L+ +C   +V++A   + ++ ++G  P
Sbjct: 388 GLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQP 447

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +I TY   +  LC N    +A  +Y  ++  G    V+ YN++++   + G  D A    
Sbjct: 448 NIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLV 507

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +M+  GC  D  TY  ++  LF+  K ++A  LL E++ +G
Sbjct: 508 SKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 51/317 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-------------------------RVKNKV- 207
           QP +   N ++D+LCK  LV +A  +C                          R+K  V 
Sbjct: 201 QPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVG 260

Query: 208 ----------KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
                     KP+  T+NIL                L  MI+ G   +  TYN+ +D + 
Sbjct: 261 LFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYF 320

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
             +   +A  +F  M  +G T   P  ++Y+IMI  L +   ++E  +L   M +    P
Sbjct: 321 LVKQENKATFVFNTMARRGVT---PDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAP 377

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +  TY  +++G+   G++ +A+  + EM N+G P D++TY+  L  LC N   D+A+ L 
Sbjct: 378 NTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLI 437

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            ++ + G  P++ TY +L+    + G    A   + ++  +G   DV  Y VM++GL   
Sbjct: 438 TKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKE 497

Query: 426 SKVEEACFLLEEVVNKG 442
              +EA  L+ ++ + G
Sbjct: 498 GLFDEALSLVSKMEDNG 514



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 137/294 (46%), Gaps = 17/294 (5%)

Query: 164 QYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---- 217
            +++++++K  QP++   N+L++  C  G +++A ++  ++ K    P+  T   L    
Sbjct: 85  SFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGL 144

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +   +++I  G   D  +Y T I+  CK     E     + +R     +  
Sbjct: 145 CLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKT---GETRAALQVLRKIDGLLVQ 201

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    Y  +I +L ++  +     L   MI     PDV TY  ++ G  + G+++EA   
Sbjct: 202 PNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGL 261

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             +M  K   PD+ T+N  +  LC      +A  +   MI+ G   ++ TYN L+  YF 
Sbjct: 262 FNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFL 321

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + + + A   ++ M +RG   DV +Y +MI+GL     V+EA  L +E+ +K +
Sbjct: 322 VKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM 375



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 69/164 (42%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ +LV+ +      S    M      PD+ T+  ++   C  G +  A+  L ++   G
Sbjct: 70  ILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLG 129

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + PD VT    +K LC N    EAL  +  +I  G      +Y  LI+   + GE   A 
Sbjct: 130 FHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAAL 189

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +   ++D      +V  Y  +ID L     V  A  L  E++ K
Sbjct: 190 QVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVK 233



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 13/176 (7%)

Query: 286 DRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           D +++  S   H+++    +  +  + ++L  +        A  F ++M  K   PD+ T
Sbjct: 42  DNVDDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFT 101

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           +N  +   C   + + A  +  ++ ++G  P   T   LI      G+   A     ++ 
Sbjct: 102 FNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVI 161

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +G   D  +Y  +I+GL    +   A  +L            RK D  L+Q +V+
Sbjct: 162 AKGFHLDQVSYGTLINGLCKTGETRAALQVL------------RKIDGLLVQPNVV 205


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 140/315 (44%), Gaps = 13/315 (4%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILGMQTLEEMIQM 228
           + +P  +++N LL  L     VD AE   +  ++ +V P+  T+N  I G+  + ++ + 
Sbjct: 151 RHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKA 210

Query: 229 GH----------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           G           AP   TYN+ ID +CK         +   ++       SPTA T+ ++
Sbjct: 211 GDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVL 270

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I    +N        +   M   G    V TY  ++ G+C  GKVEE  K +EEM + G 
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+ +T+ C LK  C      +A      M E    P V  YN+LI +Y  LG+ + A  
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMA 390

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
               M K+G + +V TY  +I G         A  LL+E+  KG++     ++  +  L 
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450

Query: 459 VIGDLGAIHKLSDHM 473
             G++    KL D M
Sbjct: 451 CKGEVRKAVKLLDEM 465



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 154/329 (46%), Gaps = 19/329 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           K +   ++ +  P+I   N ++  LC+ G +  A  + K +K   + P+  TYN L    
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 218 ----GMQT-------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
               G          L+EM++ G +P   T+   I+ +CK      A  +FE M+ +G  
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIA 296

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
            S     TY  +I  L    ++EE   L+  M + G  P+  T+  VL+G C  G + +A
Sbjct: 297 AS---VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADA 353

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
             +++ M  +   PD+V YN  + V       ++A+ +   M + G  P+V TYN LI+ 
Sbjct: 354 NDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITG 413

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +   G+   A     EM ++G   DV TY V+I  L    +V +A  LL+E+   GL+  
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPN 473

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +  +++ +      G++ + +++   M K
Sbjct: 474 HLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M+LK   E ++    P      +L++  CK      A  + + +K + +  +  TYN L 
Sbjct: 250 MLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      G++ +EEM  +G +P+  T+   +  FCK  M+ +A D  + M  +   
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV- 365

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P    Y I+I    +  +ME+  ++   M   G  P+V+TY  ++ G   +G    A
Sbjct: 366 --EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
              L+EM  KG   D+VTYN  +  LC      +A++L   M EVG  P+  TYN +I  
Sbjct: 424 SGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQG 483

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + + G    A+E    M+K     +V TY V I       K++EA  LL E+++K L
Sbjct: 484 FCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCL 540



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 103/239 (43%), Gaps = 25/239 (10%)

Query: 183 LLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           +L   CK G++ D  + I    +  V+P+   YNIL             M   E M + G
Sbjct: 340 VLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKG 399

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +P+  TYN  I  F ++     A+ L + M+ KG  I +    TY ++I AL     + 
Sbjct: 400 ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG--IEADVV-TYNVLIGALCCKGEVR 456

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   LL  M   G  P+  TY  +++G C  G ++ AY+    M       ++VTYN F+
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           K  C     DEA  L   M++    P+  TY  +          +G  E  +  D RGC
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI---------KEGMMEKGYTPDIRGC 566


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 19/280 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----------QT 221
           P I   N++++ +C+ G VD A     R+ +   +P+  +Y  +  G+          + 
Sbjct: 213 PNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEEL 272

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM++    P+  T++  +  FC+  MV  A  + E M   G   ++       I+I  
Sbjct: 273 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN---IVINT 329

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +  R+++ F  L +M + GC PD  +Y  VL+G+C A + E+A + L+EM  K  PP+
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N F+ +LC     ++A  L  +M E GC  ++ TYN L++ +   G  D A E ++
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 449

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            M    C  +  TY  ++ GL +  +++ A  LL E++ K
Sbjct: 450 SMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 486



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 152/343 (44%), Gaps = 32/343 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA---------------ETICKRVKNKVKP 209
           + E ++    P     ++L+   C+ G+V+ A                T+C  V N +  
Sbjct: 273 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 332

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                +    Q L  M   G +PD  +Y T +   C+A    +A +L + M  K      
Sbjct: 333 QGRVDD--AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNC---P 387

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T+   I  L Q   +E+   L+  M   GC  ++ TY  ++ G C+ G+V+ A + 
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL 447

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              M  K   P+ +TY   L  LC+ +  D A  L   M++  C P+V T+N+L+S + +
Sbjct: 448 FYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 504

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G  D A E   +M + GC  ++ TY  ++DG+ +    EEA  LL  +V+ G+      
Sbjct: 505 KGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVT 564

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRV 492
           +       S+IG L    ++ + ++ F+   I + L +  K V
Sbjct: 565 YS------SIIGVLSREDRVEEAIKMFH---IVQDLGMRPKAV 598



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 3/207 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           +  M  APD +TY   I   C    V EA  L + M  +G     P+  TY +++ A+ +
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGC---QPSVVTYTVLLEAVCK 192

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           +    +   +L  M   GC P++ TY  ++ GMC  G+V++A +FL  + + G+ PD V+
Sbjct: 193 STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVS 252

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   LK LC  K  ++   L+  M+E  C P+  T++ML+  +   G  + A +   +M 
Sbjct: 253 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS 312

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             GCA +     ++I+ +    +V++A
Sbjct: 313 GHGCAANTTLCNIVINTICKQGRVDDA 339



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 21/319 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------ 217
           +  T  ++ A N L+   C+ G +D A  +   +   V P+A TY  +            
Sbjct: 106 RSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--VAPDAYTYTPIIRGLCDRGRVGE 163

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L++M+  G  P   TY   ++  CK+    +A ++ + MR KG T   P   TY +
Sbjct: 164 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCT---PNIVTYNV 220

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  + +  R+++    L  + + G  PD  +Y  VL+G+C A + E+  +   EM  K 
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ VT++  ++  C     + A+++  +M   GC  +    N++I+   + G  D AF
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +  + M   GC+ D  +Y  ++ GL    + E+A  LL+E+V K        F++++  L
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 458 SVIGDLGA----IHKLSDH 472
              G +      I ++S+H
Sbjct: 401 CQKGLIEQATMLIEQMSEH 419



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------Q 220
           QP +    +LL+A+CK      A  +   ++ K   PN  TYN++  GM          +
Sbjct: 177 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 236

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  +   G  PD  +Y T +   C A+   +  +LF  M  K      P   T+ +++ 
Sbjct: 237 FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM---PNEVTFDMLVR 293

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +E    +L  M   GC  + +    V+  +C  G+V++A++FL  MG+ G  P
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D ++Y   LK LC  +  ++A  L   M+   C P+  T+N  I +  + G  + A    
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 413

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            +M + GC  ++ TY  +++G     +V+ A
Sbjct: 414 EQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM---- 219
           E ++    P     N  +  LC+ GL++ A  + +++ ++  + N  TYN L  G     
Sbjct: 380 EMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG 439

Query: 220 ---QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                LE    M   P+  TY T +   C A  +  AA+L   M  K     +P   T+ 
Sbjct: 440 RVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC---APNVVTFN 496

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++    Q   M+E   L+  M+  GC P++ TY  +L+G+      EEA + L  + + 
Sbjct: 497 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSN 556

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PDIVTY+  + VL      +EA++++  + ++G  P    YN ++    +    DGA
Sbjct: 557 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGA 616

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + +  M   GC  +  TY  +I+GL +   ++E   LL E+ ++G+
Sbjct: 617 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 34/216 (15%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +  + SSP      +    L+  D + E   L+    + G  PDV    +++  +C  
Sbjct: 34  RPEAPSASSPNPANARLR--RLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRR 91

Query: 321 GKVEEAYKFLEEMGNKG--------------------------------YPPDIVTYNCF 348
           G+  +A + L      G                                  PD  TY   
Sbjct: 92  GRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPI 151

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           ++ LCD     EAL L   M+  GC PSV TY +L+    +      A E   EM  +GC
Sbjct: 152 IRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC 211

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             ++ TY V+I+G+    +V++A   L  + + G +
Sbjct: 212 TPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ 247


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 22/317 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+      L+  LC  G + D      K +    +PN  TY  L          
Sbjct: 131 LKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 190

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M Q    PD   Y + ID+ CK R VTEA +LF  M  +G    SP   TY
Sbjct: 191 NAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGI---SPDIFTY 247

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I +L      +   +LL  MINS  +PDV  +  V++ +C  GK+ EA+  ++ M  
Sbjct: 248 TSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMII 307

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P++VTYN  +   C     DEA++++  M+  G  P+V +YN LI+ Y ++   D 
Sbjct: 308 RGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDK 367

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A   + EM ++    +  TY  ++       ++++A  L  E+V  G ++P    YR   
Sbjct: 368 ATYLFEEMCQKELIPNTVTYNTLMHXCH-VGRLQDAIALFHEMVAHG-QIPDLATYRILL 425

Query: 452 SYLMQLSVIGDLGAIHK 468
            YL + S + +  A+ K
Sbjct: 426 DYLCKKSHLDEAMALLK 442



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 17/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL-------- 217
           + I  K  P++   + ++DALCK G +  A  +    +   V+PN  TYN L        
Sbjct: 269 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 328

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++  + M+  G+AP+  +YNT I+ +CK + + +A  LFE M  K      P   
Sbjct: 329 EMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI---PNTV 385

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  ++       R+++  +L   M+  G +PD++TY+ +L+ +C    ++EA   L+ +
Sbjct: 386 TYNTLM-HXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTI 444

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 PDI  Y   +  +C     + A  ++  +   G  P+V+TY ++I+     G  
Sbjct: 445 EGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLL 504

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           D A + + EMD  GC+ D  TY  +  GL    +   A  LL+E++ +G  
Sbjct: 505 DEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 555



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 120/271 (44%), Gaps = 5/271 (1%)

Query: 205 NKVKPNANTYNIL--GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N+    +  +N L   + +   M+ M   P    +N  + +  K +       L   M +
Sbjct: 38  NRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDS 97

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P   T  I+I +    +R+   FS+L  ++  G  PD +T+  ++ G+C+ GK
Sbjct: 98  FGI---PPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGK 154

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           + +A    ++M  +G+ P++VTY   +  LC   N + A+RL   M +  C P V  Y  
Sbjct: 155 IGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 214

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I    +  +   AF  + +M  +G + D+ TY  +I  L +  + +    LL +++N  
Sbjct: 215 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 274

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +      F + +  L   G +   H + D M
Sbjct: 275 IMPDVVIFSTVVDALCKEGKITEAHDVVDMM 305



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 50/229 (21%)

Query: 175 PEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL-----------GM 219
           P + + N L++  CK   +D A    E +C++   ++ PN  TYN L            +
Sbjct: 347 PNVISYNTLINGYCKIQRMDKATYLFEEMCQK---ELIPNTVTYNTLMHXCHVGRLQDAI 403

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF---------------------- 257
               EM+  G  PD  TY   +D  CK   + EA  L                       
Sbjct: 404 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGM 463

Query: 258 ------EFMRTKGSTISS----PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
                 E  R   S +SS    P  +TY IMI  L +   ++E   L   M  +GC PD 
Sbjct: 464 CRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDG 523

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            TY  + +G+    +   A + L+EM  +G+  D+ T    +++LCD+K
Sbjct: 524 CTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDK 572



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 65/153 (42%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A      M +   PP  V +N  L  +   K       L  +M   G  P V T N+
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ +  L     AF    ++ K G   D  T+  +I GL    K+ +A  L ++++ +G
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 169

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +     + + +  L  +G+  A  +L   M +
Sbjct: 170 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ 202


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+ +  N+L+ A  KCG++D A  I   ++ + V+P+  TY+ +             ++ 
Sbjct: 389 PDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEK 448

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G AP   TY+  I  FC    + +A DL   M  KG     P    +  +I  
Sbjct: 449 FNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGM---RPDIGCFNFIINN 505

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    I+ G  P+V  Y  +++G CL GK+E A +  + M + G  P+
Sbjct: 506 LCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPN 565

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +   C     DE L L+  ++  G  PS   YN+++   F+ G    A   +H
Sbjct: 566 VVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFH 625

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A D  TY +++ GLF  S  +EA  L +E+    +K+
Sbjct: 626 EMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKI 669



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 23/301 (7%)

Query: 164 QYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN 215
           Q+ E ++V  +       P++  LN L+ +LCK G +  A  +   +  K  K +  +Y 
Sbjct: 301 QWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYK 360

Query: 216 IL--GMQT------LEEMIQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           I+  G  T      L E+  +    G APD+  +N  I  + K  M+  A  +F  MR +
Sbjct: 361 IMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQ 420

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY+ +I AL +  +M++       MI+ G  P +STY  +++G C  G +
Sbjct: 421 GV---EPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDL 477

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +A   + +M NKG  PDI  +N  +  LC      +A  ++   I +G  P+V  YN L
Sbjct: 478 LKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTL 537

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  Y  +G+ + A   +  M   G   +V  Y  +++G     +++E   L  E+++KG+
Sbjct: 538 MDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGI 597

Query: 444 K 444
           K
Sbjct: 598 K 598



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P+++  N +++ALCK   +D AE I +++ +K V P+  TYN L      
Sbjct: 239 FNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSS 298

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  ++M   G  PD  T N+ + + CK   + +A D+F+ M  KG       
Sbjct: 299 TGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTD--- 355

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M++ G  PD   +  +++     G ++ A     
Sbjct: 356 IFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFN 415

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G  PD+VTY+  +  LC     D+A+  + +MI+ G  PS+ TY+ LI  +   G
Sbjct: 416 EMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHG 475

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A +   +M  +G   D+  +  +I+ L    +V +A  + +  ++ GL
Sbjct: 476 DLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGL 527



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+   YNT ID F K   V +A DLF  M  +G    SP   TY  ++ AL +   M++ 
Sbjct: 214 PNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGI---SPDLSTYNCVVNALCKARAMDKA 270

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            ++L  M++ G LPD  TY  ++ G    G+ +EA +  ++M ++G  PD+VT N  +  
Sbjct: 271 EAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMAS 330

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC +    +A  ++  M   G    + +Y ++++ Y   G      E ++ M   G A D
Sbjct: 331 LCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPD 390

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
              + V+I     C  ++ A  +  E+  +G++     + + +  L  IG      K+ D
Sbjct: 391 SHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIG------KMDD 444

Query: 472 HMRKF 476
            + KF
Sbjct: 445 AVEKF 449



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 134/308 (43%), Gaps = 16/308 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++++ + I     P I+  + L+   C  G +  A+ +  ++ NK ++P+   +N +   
Sbjct: 446 VEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINN 505

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                         +  I +G  P+   YNT +D +C    +  A  +F+ M + G    
Sbjct: 506 LCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGI--- 562

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P    Y  ++    +  R++E  SL   +++ G  P  + Y  +L G+  AG+   A  
Sbjct: 563 QPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKV 622

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              EM   G   D  TY+  L  L  N   DEA+ L+  +  +     + T N++I+  F
Sbjct: 623 KFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMF 682

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++   + A + +  + + G    V TY +M+  L     VEEA  +   + N G + P  
Sbjct: 683 QIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNS 742

Query: 449 KFDSYLMQ 456
           +  +++++
Sbjct: 743 QLLNHVVR 750



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 206 KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
           + K  A   +IL    L  M  +G  PD F+Y   + + C  R   +A +L   M  +G 
Sbjct: 155 EAKRTAEALDIL----LHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMM-AEGG 209

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
            +  P A  Y  +I    +   + +   L   M+  G  PD+STY  V+  +C A  +++
Sbjct: 210 AVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDK 269

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A   L +M +KG  PD  TYN  +          EA+R+  +M   G  P V T N L++
Sbjct: 270 AEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMA 329

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
              + G+   A + +  M  +G   D+ +Y +M++G
Sbjct: 330 SLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNG 365



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R  G  + SPT  TY I++    +  R +   +  G ++ +G   D      +L G+C A
Sbjct: 97  RAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEA 156

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            +  EA    L  M + G  PD+ +Y   LK LC ++   +A  L   M E G  C P+ 
Sbjct: 157 KRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNA 216

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN +I  +F+ G+ + A + ++EM +RG + D+ TY  +++ L     +++A  +L +
Sbjct: 217 VAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQ 276

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +V+KG+      ++S +   S  G      ++S  M
Sbjct: 277 MVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKM 312



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 18/253 (7%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P  +TY IL             +    ++++ G   D    +  +   C+A+   EA 
Sbjct: 104 LSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEAL 163

Query: 255 D-LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYK 311
           D L   M   G     P   +Y I++ +L  + +  +   LL  M   G  CLP+   Y 
Sbjct: 164 DILLHRMPHLGCV---PDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYN 220

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            V++G    G V +A     EM  +G  PD+ TYNC +  LC  +  D+A  +  +M++ 
Sbjct: 221 TVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDK 280

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P   TYN LI  Y   G+   A     +M  +G   DV T   ++  L    K+++A
Sbjct: 281 GVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDA 340

Query: 432 CFLLEEVVNKGLK 444
             + + +  KG K
Sbjct: 341 RDVFDSMAMKGQK 353


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 16/286 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K + ++   N ++D+LCK   VD A  + K ++ K ++PN  TY+ L             
Sbjct: 217 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 276

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            Q L +MI+    P+  T+N  ID F K     EA  L++ M  +      P   TY  +
Sbjct: 277 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI---DPDIFTYNSL 333

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +     +DR+++   +   M++  C PDV TY  +++G C + +VE+  +   EM ++G 
Sbjct: 334 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 393

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D VTY   ++ L  + + D A +++ +M+  G  P + TY++L+      G+ + A E
Sbjct: 394 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 453

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +  M K     D+  Y  MI+G+    KV++   L   +  KG+K
Sbjct: 454 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 499



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 130/287 (45%), Gaps = 15/287 (5%)

Query: 201 KRVKNKVKPNANTYNI------------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
           + V+   +PN  TY +            L +  L +M       D   +NT ID+ CK R
Sbjct: 177 RMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 236

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            V +A +LF+ M TKG     P   TY+ +I  L    R  +   LL  MI     P++ 
Sbjct: 237 HVDDALNLFKEMETKGI---RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 293

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T+  +++     GK  EA K  ++M  +   PDI TYN  +   C +   D+A +++  M
Sbjct: 294 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 353

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +   C+P V TYN LI  + +    +   E + EM  RG   D  TY  +I GLF     
Sbjct: 354 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 413

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           + A  + +++V+ G+      +   L  L   G L    ++ D+M+K
Sbjct: 414 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 460



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 146/303 (48%), Gaps = 23/303 (7%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
           VD  L + K+   K     +P +   + L+  LC  G   D ++ +   ++ K+ PN  T
Sbjct: 238 VDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 294

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +N L              +  ++MI+    PD FTYN+ ++ FC    + +A  +FEFM 
Sbjct: 295 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 354

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           +K      P   TY  +I    ++ R+E+   L   M + G + D  TY  +++G+   G
Sbjct: 355 SKDCF---PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 411

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
             + A K  ++M + G PPDI+TY+  L  LC+N   ++AL ++  M +      +  Y 
Sbjct: 412 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 471

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVV 439
            +I    + G+ D  ++ +  +  +G   +V TY  MI GL  CSK  ++EA  LL+++ 
Sbjct: 472 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL--CSKRLLQEAYALLKKMK 529

Query: 440 NKG 442
             G
Sbjct: 530 EDG 532



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 47/288 (16%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           ++ I+ K  P +   N L+DA  K G    AE +    +K  + P+  TYN L       
Sbjct: 281 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 340

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------- 264
                  Q  E M+     PD  TYNT I  FCK++ V +  +LF  M  +G        
Sbjct: 341 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 400

Query: 265 ------------------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                   S    P   TY+I++  L  N ++E+   +  +M  
Sbjct: 401 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 460

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S    D+  Y  ++EGMC AGKV++ +     +  KG  P++VTYN  +  LC  +   E
Sbjct: 461 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 520

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           A  L  +M E G  P+  TYN LI  +   G+   + E   EM  R C
Sbjct: 521 AYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM--RSC 566



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 16/285 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           QP +    ++++ LCK G  D A  +  +++  K++ +   +N +             + 
Sbjct: 184 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 243

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM   G  P+  TY++ I   C     ++A+ L   M  K     +P   T+  +I 
Sbjct: 244 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI---NPNLVTFNALID 300

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A V+  +  E   L   MI     PD+ TY  ++ G C+  ++++A +  E M +K   P
Sbjct: 301 AFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 360

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTYN  +K  C +K  ++   L+  M   G      TY  LI   F  G+ D A + +
Sbjct: 361 DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 420

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            +M   G   D+ TY +++DGL +  K+E+A  + + +    +KL
Sbjct: 421 KQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 465



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 16/288 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K +  P I   N LL A+ K    D   ++ ++++  ++     TYNIL          
Sbjct: 39  VKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQI 98

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  L +M+++G+ P   T ++ ++ +C  + +++A  L + M   G     P   T+
Sbjct: 99  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY---RPDTITF 155

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L  +++  E  +L+  M+  GC P++ TY  V+ G+C  G  + A   L +M  
Sbjct: 156 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA 215

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
                D+V +N  +  LC  ++ D+AL L+  M   G  P+V TY+ LIS     G    
Sbjct: 216 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 275

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A +   +M ++    ++ T+  +ID      K  EA  L ++++ + +
Sbjct: 276 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 323



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I+I    +  ++    +LLG M+  G  P + T   +L G C   ++ +A   +++M
Sbjct: 84  TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 143

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY PD +T+   +  L  +    EA+ L  RM++ GC P++ TY ++++   + G+ 
Sbjct: 144 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 203

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A    ++M+      DV  +  +ID L     V++A  L +E+  KG++     + S 
Sbjct: 204 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 263

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +  L   G    A   LSD + K  NP
Sbjct: 264 ISCLCSYGRWSDASQLLSDMIEKKINP 290



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 1/179 (0%)

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G   SS +     I+   L  + ++++   L G M+ S  LP +  + ++L  +    K 
Sbjct: 5   GRAFSSGSGDYREILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF 63

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +      E+M        + TYN  +   C       AL L G+M+++G  PS+ T + L
Sbjct: 64  DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSL 123

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           ++ Y        A     +M + G   D  T+  +I GLF  +K  EA  L++ +V +G
Sbjct: 124 LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 182



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 16/187 (8%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  L   G  D A+ + K+ V + V P+  TY+IL             ++  + M +  
Sbjct: 403 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 462

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              D + Y T I+  CKA  V +  DLF  +  KG     P   TY  MI  L     ++
Sbjct: 463 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV---KPNVVTYNTMISGLCSKRLLQ 519

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E ++LL  M   G LP+  TY  ++      G    + + + EM +  +  D  T     
Sbjct: 520 EAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 579

Query: 350 KVLCDNK 356
            +L D +
Sbjct: 580 NMLHDGR 586


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 196/449 (43%), Gaps = 53/449 (11%)

Query: 77  VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYN--LMIDILSSTKYKAKQ 134
           +P  T S++  L     +   A  FF W     N+ H    ++  L++ +   T   A+ 
Sbjct: 48  IPSLTPSLLCSLFNLNPDPLTALNFFRWIRRHHNFPHSLATHHSLLLLLVRHRTLRAAEN 107

Query: 135 FR----LVCS-------MLDYMKRNNKVFVPVD---------------VLLMILKQYT-- 166
            R      C+       +L+ ++R N      D                LLM L +++  
Sbjct: 108 VRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMV 167

Query: 167 -EKIKVKTQ----------PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTY 214
            E I +  +          P +  LN +L++ CK G +  A     R+ + +  P+  TY
Sbjct: 168 DEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTY 227

Query: 215 N--ILGMQTLEEMIQMGHA------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
              +LG    +++ +           +  +Y   I   C+A  + EA + +  MR  G  
Sbjct: 228 TSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCF 287

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              PT +TY +++ AL ++ R  E  SL G M   GC P+V TY  +++ +C  G+++EA
Sbjct: 288 ---PTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEA 344

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            K L EM  KG  P +V +N  +   C     ++A+ + G M      P+V+TYN LI  
Sbjct: 345 LKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICG 404

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +      D A    ++M +   + DV TY  +I GL +   V+ A  L   ++  G    
Sbjct: 405 FCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPD 464

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              F+++++ L  +G +G  H++ + +++
Sbjct: 465 QWTFNAFMVCLCRMGRVGEAHQILESLKE 493



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 130/283 (45%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +    +L+ ALC+ G    A ++   ++ +  +PN  TY +L             ++ 
Sbjct: 288 PTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKM 347

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM++ G AP    +N  I ++CK  M+ +A  +   M +K      P  +TY  +I  
Sbjct: 348 LNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVC---PNVRTYNELICG 404

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   M+   +LL  M+ S   PDV TY  ++ G+C  G V+ A +    M   G+ PD
Sbjct: 405 FCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPD 464

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+N F+  LC      EA ++   + E     +   Y  LI  Y + G+ + A   + 
Sbjct: 465 QWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFK 524

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            M    C  +  T+ VMIDGL    KV++A  L+E++    +K
Sbjct: 525 RMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVK 567



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 151/368 (41%), Gaps = 63/368 (17%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           LK   E ++    P +   N L+ + CK G+++ A  +   +++K V PN  TYN L   
Sbjct: 345 LKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICG 404

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     M  L +M++   +PD  TYNT I   C+  +V  A+ LF  M   G    
Sbjct: 405 FCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGF--- 461

Query: 269 SPTAKTYAIMIVALVQNDR-----------------------------------MEECFS 293
           SP   T+   +V L +  R                                   +E   S
Sbjct: 462 SPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAAS 521

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M+   CLP+  T+  +++G+   GKV++A   +E+M      P + TYN  ++ + 
Sbjct: 522 LFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVL 581

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
              + D A  +  R+I  G  P+V TY   I  Y   G  + A E   ++   G   D  
Sbjct: 582 KEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSF 641

Query: 414 TYCVMIDGLFDCSKVEEACF-LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            Y ++I+  + C  + ++ F +L  +   G +  Y  + S LM+  VI           H
Sbjct: 642 IYNLLINA-YGCMGLLDSAFGVLRRMFGTGCEPSYLTY-SILMKHLVI---------EKH 690

Query: 473 MRKFYNPV 480
            ++  NPV
Sbjct: 691 KKEGSNPV 698



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 149/379 (39%), Gaps = 74/379 (19%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL---------- 217
           ++ K  P++   N L+  LC+ G+VD A  + +  +++   P+  T+N            
Sbjct: 422 VESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRV 481

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM--------------- 260
               Q LE + +     +   Y   ID +CKA  +  AA LF+ M               
Sbjct: 482 GEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVM 541

Query: 261 ----RTKGSTISS-------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
               R +G    +             PT  TY I++  +++    +    +L  +I+SG 
Sbjct: 542 IDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGY 601

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            P+V TY   ++  C  G++EEA + + ++ N+G   D   YN  +         D A  
Sbjct: 602 QPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFG 661

Query: 364 LYGRMIEVGCWPSVQTYNMLIS-MYFELGEPDGA----------------FETWHEMD-- 404
           +  RM   GC PS  TY++L+  +  E  + +G+                 + W ++D  
Sbjct: 662 VLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFG 721

Query: 405 ----------KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
                     + GC  +++TY  +I+GL    ++  A  L   +   G+       +S L
Sbjct: 722 ITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLL 781

Query: 455 MQLSVIGDLGAIHKLSDHM 473
                +G  G    L D M
Sbjct: 782 SSCCKLGMFGEAVTLLDSM 800



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 53/358 (14%)

Query: 141 MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
           M+D +++  KV    D +L++     +  K   +P ++  N+L++ + K    D A  I 
Sbjct: 541 MIDGLRKEGKV---QDAMLLV----EDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEIL 593

Query: 201 KR-VKNKVKPNANTYNIL--------GMQTLEEMI----QMGHAPDNFTYNTAIDTFCKA 247
            R + +  +PN  TY            ++  EEM+      G   D+F YN  I+ +   
Sbjct: 594 NRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCM 653

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG----------- 296
            ++  A   F  +R    T   P+  TY+I++  LV     +E  + +G           
Sbjct: 654 GLLDSA---FGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVD 710

Query: 297 ------------------HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
                              M   GC+P+++TY +++ G+C  G++  A+     M   G 
Sbjct: 711 NTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGI 770

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P  + +N  L   C      EA+ L   M+E      +++Y +LI   FE    + A  
Sbjct: 771 SPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEA 830

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            +  + + G   D   + V+IDGL     V++   LL  +   G +L    + S LMQ
Sbjct: 831 VFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETY-SMLMQ 887


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 141/280 (50%), Gaps = 19/280 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----------QT 221
           P I   N++++ +C+ G VD A     R+ +   +P+  +Y  +  G+          + 
Sbjct: 244 PNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEEL 303

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM++    P+  T++  +  FC+  MV  A  + E M   G   ++       I+I  
Sbjct: 304 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN---IVINT 360

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +  R+++ F  L +M + GC PD  +Y  VL+G+C A + E+A + L+EM  K  PP+
Sbjct: 361 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 420

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N F+ +LC     ++A  L  +M E GC  ++ TYN L++ +   G  D A E ++
Sbjct: 421 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 480

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            M    C  +  TY  ++ GL +  +++ A  LL E++ K
Sbjct: 481 SMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 517



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 32/343 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA---------------ETICKRVKNKVKP 209
           + E ++    P     ++L+   C+ G+V+ A                T+C  V N +  
Sbjct: 304 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 363

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                +    Q L  M   G +PD  +Y T +   C+A    +A +L + M  K      
Sbjct: 364 QGRVDD--AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNC---P 418

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T+   I  L Q   +E+   L+  M   GC  ++ TY  ++ G C+ G+V+ A + 
Sbjct: 419 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL 478

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              M  K   P+ +TY   L  LC+ +  D A  L   M++  C P+V T+N+L+S + +
Sbjct: 479 FYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 535

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G  D A E   +M + GC  ++ TY  ++DG+      EEA  LL  +V+ G+      
Sbjct: 536 KGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVT 595

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRV 492
           +       S+IG L    ++ + ++ F+   I + L +  K V
Sbjct: 596 YS------SIIGVLSREDRVEEAIKMFH---IVQDLGMRPKAV 629



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 3/207 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           +  M  APD +TY   I   C    V EA  L + M  +G     P+  TY +++ A+ +
Sbjct: 167 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGC---QPSVVTYTVLLEAVCK 223

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           +    +   +L  M   GC P++ TY  ++ GMC  G+V++A +FL  + + G+ PD V+
Sbjct: 224 STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVS 283

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   LK LC  K  ++   L+  M+E  C P+  T++ML+  +   G  + A +   +M 
Sbjct: 284 YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS 343

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             GCA +     ++I+ +    +V++A
Sbjct: 344 GHGCAANTTLCNIVINTICKQGRVDDA 370



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 21/319 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------ 217
           +  T  ++ A N L+   C+ G +D A  +   +   V P+A TY  +            
Sbjct: 137 RSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--VAPDAYTYTPIIRGLCDRGRVGE 194

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L++M+  G  P   TY   ++  CK+    +A ++ + MR KG T   P   TY +
Sbjct: 195 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCT---PNIVTYNV 251

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  + +  R+++    L  + + G  PD  +Y  VL+G+C A + E+  +   EM  K 
Sbjct: 252 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 311

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ VT++  ++  C     + A+++  +M   GC  +    N++I+   + G  D AF
Sbjct: 312 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 371

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           +  + M   GC+ D  +Y  ++ GL    + E+A  LL+E+V K        F++++  L
Sbjct: 372 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 431

Query: 458 SVIGDLGA----IHKLSDH 472
              G +      I ++S+H
Sbjct: 432 CQKGLIEQATMLIEQMSEH 450



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------Q 220
           QP +    +LL+A+CK      A  +   ++ K   PN  TYN++  GM          +
Sbjct: 208 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 267

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  +   G  PD  +Y T +   C A+   +  +LF  M  K      P   T+ +++ 
Sbjct: 268 FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM---PNEVTFDMLVR 324

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +E    +L  M   GC  + +    V+  +C  G+V++A++FL  MG+ G  P
Sbjct: 325 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 384

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D ++Y   LK LC  +  ++A  L   M+   C P+  T+N  I +  + G  + A    
Sbjct: 385 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 444

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            +M + GC  ++ TY  +++G     +V+ A
Sbjct: 445 EQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 475



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM---- 219
           E ++    P     N  +  LC+ GL++ A  + +++ ++  + N  TYN L  G     
Sbjct: 411 EMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQG 470

Query: 220 ---QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                LE    M   P+  TY T +   C A  +  AA+L   M  K     +P   T+ 
Sbjct: 471 RVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC---APNVVTFN 527

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++    Q   M+E   L+  M+  GC P++ TY  +L+G+      EEA + L  + + 
Sbjct: 528 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 587

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PDIVTY+  + VL      +EA++++  + ++G  P    YN ++    +    DGA
Sbjct: 588 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGA 647

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + +  M   GC  +  TY  +I+GL +   ++E   LL E+ ++G+
Sbjct: 648 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 32/183 (17%)

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG---------------- 337
           L+    + G  PDV    +++  +C  G+  +A + L      G                
Sbjct: 96  LVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYC 155

Query: 338 ----------------YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
                             PD  TY   ++ LCD     EAL L   M+  GC PSV TY 
Sbjct: 156 RYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYT 215

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+    +      A E   EM  +GC  ++ TY V+I+G+    +V++A   L  + + 
Sbjct: 216 VLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSY 275

Query: 442 GLK 444
           G +
Sbjct: 276 GFQ 278



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A + ++   ++G  PD+      ++ LC      +A R+       G    V  YN L++
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            Y   G+ D A      M     A D  TY  +I GL D  +V EA  LL++++++G + 
Sbjct: 153 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 209

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
               +   L  +      G   ++ D MR
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMR 238


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 147/337 (43%), Gaps = 24/337 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E +     P I   + L+  LC+ GL +   E   +  ++   P+   Y  +        
Sbjct: 242 EMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEE 301

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   L  M   G +P+   YNT +   C A    EA  L   M  K   +      
Sbjct: 302 RLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDD---V 358

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ I++  L QN  ++    +L  M+  GC+PDV TY  V+ G C  G ++EA   L  M
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P+ V+Y   LK LC  +   +A  L  +MI+ GC P+  T+N LI+   + G  
Sbjct: 419 AACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 478

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A E   +M   GC+ D+ +Y  +IDGL      +EA  LL  +V KG+      + S 
Sbjct: 479 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSI 538

Query: 454 LMQLSVIGDLGAIHKLSDHMRK--------FYNPVIA 482
              LS  G +  + ++ ++++          YN VI+
Sbjct: 539 ASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVIS 575



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 17/281 (6%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL--GM----------QT 221
           ++   NL+L A+C  G VD A  + + +      +P+  +YN +  G+            
Sbjct: 180 DVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDL 239

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EEM+  G  P+  T++T I   C+  +     ++   M   G    +P  + YA +I  
Sbjct: 240 MEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHG---CAPDVRMYATIIDG 296

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + + +R+E    +L  M + G  P+V  Y  +L+G+C A + EEA   L EM +K  P D
Sbjct: 297 VCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLD 356

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N  +  LC N   D  + +  +M+E GC P V TY  +I+ + + G  D A     
Sbjct: 357 DVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLR 416

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            M   GC  +  +Y +++ GL    +  +A  L+ +++ +G
Sbjct: 417 SMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQG 457



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 135/314 (42%), Gaps = 45/314 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNILG------------MQ 220
            P +   N LL  LC     + AE +   + +K  P +  T+NIL             ++
Sbjct: 319 SPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIE 378

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---STIS--------- 268
            LE+M++ G  PD  TY T I+ FCK  ++ EA  L   M   G   +T+S         
Sbjct: 379 VLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLC 438

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   T+  +I  L +   +E+   LL  M+ +GC PD+ 
Sbjct: 439 SAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 498

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           +Y  V++G+  AG  +EA + L  M  KG  P+ + Y+     L      ++ ++++  +
Sbjct: 499 SYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENI 558

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            +         YN +IS   + GE D A E    M   GC  +  TY ++I GL     V
Sbjct: 559 QDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFV 618

Query: 429 EEACFLLEEVVNKG 442
           +EA  +L E+ +KG
Sbjct: 619 KEAQEILTELCSKG 632



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 16/252 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           V PNA TY  L             +  L++M + G AP    Y+  ++  C+A     A 
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAV 166

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEV 313
            +   +  +G  +         +++ A+     ++E   LL  ++ S GC PDV +Y  V
Sbjct: 167 GVLRDLHGRGCALDVGNCN---LVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAV 223

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           L G+C+A +       +EEM   G PP+IVT++  +  LC N   +    ++ +M E GC
Sbjct: 224 LRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGC 283

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P V+ Y  +I    +    + A    + M   G + +V  Y  ++ GL    + EEA  
Sbjct: 284 APDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEG 343

Query: 434 LLEEVVNKGLKL 445
           LL E+ +K   L
Sbjct: 344 LLAEMFDKDCPL 355



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 16/185 (8%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------- 217
           ++ I+    P     N L++ LCK GLV+ A E + + + N   P+  +Y+ +       
Sbjct: 451 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 510

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 ++ L  M++ G +P+   Y++          + +   +FE ++   +T+ S  A
Sbjct: 511 GNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQD--TTVRS-DA 567

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  +I +L +    +     L +M++SGC+P+ STY  ++ G+   G V+EA + L E
Sbjct: 568 VLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTE 627

Query: 333 MGNKG 337
           + +KG
Sbjct: 628 LCSKG 632



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 86/237 (36%), Gaps = 40/237 (16%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN  +  +C+A        L    R   S   +P A TY  ++ AL    R+ +  ++L 
Sbjct: 82  YNAMVAGYCRA------GQLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLD 135

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M   GC P    Y   LE  C A     A   L ++  +G   D+   N  L+ +CD  
Sbjct: 136 DMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQG 195

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             DEA+RL   ++     PS                              GC  DV +Y 
Sbjct: 196 PVDEAVRLLRDLL-----PSF-----------------------------GCEPDVVSYN 221

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            ++ GL    +      L+EE+V  G       F + +  L   G    +H++   M
Sbjct: 222 AVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQM 278



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 16/144 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-----GMQTLEEMIQ 227
            P++ + + ++D L K G  D A E +   VK  + PN   Y+ +     G   + ++IQ
Sbjct: 494 SPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQ 553

Query: 228 MGH-------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           M           D   YN  I + CK      A +   +M + G     P   TY I+I 
Sbjct: 554 MFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCV---PNESTYTILIR 610

Query: 281 ALVQNDRMEECFSLLGHMINSGCL 304
            L     ++E   +L  + + G L
Sbjct: 611 GLASEGFVKEAQEILTELCSKGAL 634


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 146/338 (43%), Gaps = 51/338 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--------------- 217
           +P+    N  +  LCK G ++ A   ICK ++  + PNA TYN L               
Sbjct: 283 EPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYA 342

Query: 218 --------GMQT------------------------LEEMIQMGHAPDNFTYNTAIDTFC 245
                   G+                          ++EM + G  PD  T+N  I+ +C
Sbjct: 343 YRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYC 402

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           +      A  L + M  KG     PT  TY  +I  L + +RM+E  +L   +   G LP
Sbjct: 403 RCGDAKRAFGLLDEMVGKGI---QPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLP 459

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           D+  +  +++G C  G ++ A++ L+EM N    PD +TYN  ++  C     +EA +L 
Sbjct: 460 DIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLL 519

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M   G  P   +YN LIS Y + G+   AF    EM   G    + TY  +I GL   
Sbjct: 520 DEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKN 579

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            + E A  LL+E+V+KG+      + S +  +  + DL
Sbjct: 580 QEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDL 617



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 158/339 (46%), Gaps = 19/339 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM-- 219
           + E + VK  P +   N ++   C  G    A  I + +K+K ++P+  TYN  I G+  
Sbjct: 241 HMETLGVK--PNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCK 298

Query: 220 -QTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
              LEE       M++ G  P+  TYN  ID +C    + +A    + M +KG   S   
Sbjct: 299 EGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMAS--- 355

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY + I AL    RM +  +++  M   G +PD  T+  ++ G C  G  + A+  L+
Sbjct: 356 LVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLD 415

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  KG  P +VTY   + VL       EA  L+ ++ + G  P +  +N LI  +   G
Sbjct: 416 EMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANG 475

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
             D AF+   EMD      D  TY  ++ G     KVEEA  LL+E+  +G+K  +  ++
Sbjct: 476 NIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYN 535

Query: 452 SYLMQLSVIGDLGAIHKLSDH-MRKFYNPVIARRLALNQ 489
           + +   S  GD+    ++ D  M   ++P I    AL Q
Sbjct: 536 TLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQ 574



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 89/170 (52%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+ IMI  L +  ++++    +GHM   G  P+V TY  ++ G CL GK + A    + M
Sbjct: 218 TFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTM 277

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +KG  PD  TYN F+  LC     +EA  L  +M+E G  P+  TYN LI  Y   G+ 
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDL 337

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D A+    EM  +G    + TY + I  LF   ++ +A  +++E+  KG+
Sbjct: 338 DKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGM 387



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 3/221 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM +M      +T+N  I+  CK   + +A +    M T G     P   TY  +I    
Sbjct: 206 EMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLG---VKPNVVTYNTIIHGHC 262

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              + +    +   M + G  PD  TY   + G+C  G++EEA   + +M   G  P+ V
Sbjct: 263 LRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAV 322

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +   C+  + D+A      MI  G   S+ TYN+ I   F  G    A     EM
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEM 382

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            ++G   D  T+ ++I+G   C   + A  LL+E+V KG++
Sbjct: 383 REKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQ 423



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 109/245 (44%), Gaps = 3/245 (1%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           A     ++  +  +C+ +   EA + F  ++ KG     P  +T   M+   ++ +R + 
Sbjct: 143 AKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFV---PNIETCNQMLSLFLKLNRTQM 199

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
            + L   M        + T+  ++  +C  GK+++A +F+  M   G  P++VTYN  + 
Sbjct: 200 AWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIH 259

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
             C       A  ++  M + G  P   TYN  IS   + G  + A     +M + G   
Sbjct: 260 GHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVP 319

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           +  TY  +IDG  +   +++A    +E+++KG+      ++ ++  L + G +G    + 
Sbjct: 320 NAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMI 379

Query: 471 DHMRK 475
             MR+
Sbjct: 380 KEMRE 384


>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
          Length = 508

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 172/399 (43%), Gaps = 54/399 (13%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFE---------EKIAFRFFMWAGHQDNYAHEPLA 117
           N  +ALD +   ++   V  VL +F             ++A++FF+WA  Q+ Y H    
Sbjct: 126 NTRQALDEMRPRVSNALVREVLLKFVVSIDGVNRARYPRLAYKFFLWAEDQEGYRHGTSM 185

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
           YNL++ I +        +RL+  M D         +PV          T  + V T    
Sbjct: 186 YNLILKIFAECGELKAMWRLLEDMTDKG-------LPVS-------SRTFHLLVCTSGRA 231

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL-------------EE 224
                L++   K    +Y            +P  N++N + + TL             ++
Sbjct: 232 GLRRRLVERFIKSSNFNY------------RPFRNSFNAI-LHTLLTIEQYSLIEWVHQK 278

Query: 225 MIQMGHAPDNFTYNTAIDTFCKAR-MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           MI  GH+PD  TYN  +    +A+ M+ +     + +   G    +P   TY +++  L 
Sbjct: 279 MIAEGHSPDVLTYNVVM----RAKYMLGKLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLG 334

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           + D+     +LL +M + GC+P V  +  +++G+  AG +E    F +EM  KG  PD+V
Sbjct: 335 KGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFFDEMVKKGCQPDVV 394

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            Y   +         DEA + +  M+  G  P+V TYN +I     +GE D A     +M
Sbjct: 395 CYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIVGEFDKACSLLKDM 454

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + RGC  +   Y  ++  L +  K  EA  +++ + NKG
Sbjct: 455 ESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKG 493



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 81/166 (48%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           MI  G  PDV TY  V+    + GK+ + +K L+EMG  G  PD+ TYN  L VL     
Sbjct: 279 MIAEGHSPDVLTYNVVMRAKYMLGKLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDK 338

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
              AL L   M +VGC P+V  +  LI      G  +     + EM K+GC  DV  Y V
Sbjct: 339 PLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTV 398

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           MI G     + +EA    ++++ +G       ++S +  L ++G+ 
Sbjct: 399 MITGYVAAGEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIVGEF 444



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 27/233 (11%)

Query: 112 AHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQYTE 167
            H P  L YN+++      KY   +      +LD M +N         ++LL +L +  +
Sbjct: 283 GHSPDVLTYNVVM----RAKYMLGKLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDK 338

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETI--CKRVKNKVKPNANTYNILGMQTLEEM 225
            +       +N LN + D  C   ++ +   I    R  N     A  Y        +EM
Sbjct: 339 PLAA-----LNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNL---EACKY------FFDEM 384

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           ++ G  PD   Y   I  +  A    EA   F+ M  +G     P   TY  MI  L   
Sbjct: 385 VKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQL---PNVYTYNSMICGLCIV 441

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
              ++  SLL  M + GC P+ + Y  ++  +  AGK  EA   ++ M NKG+
Sbjct: 442 GEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKGH 494



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 6/204 (2%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM- 333
           Y +++    +   ++  + LL  M + G LP  S    +L  +C +G+     + +E   
Sbjct: 186 YNLILKIFAECGELKAMWRLLEDMTDKG-LPVSSRTFHLL--VCTSGRAGLRRRLVERFI 242

Query: 334 --GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
              N  Y P   ++N  L  L   +       ++ +MI  G  P V TYN+++   + LG
Sbjct: 243 KSSNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLG 302

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + +   +   EM K G A D+ TY +++  L    K   A  LL  + + G       F 
Sbjct: 303 KLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFT 362

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRK 475
           + +  LS  G+L A     D M K
Sbjct: 363 NLIDGLSRAGNLEACKYFFDEMVK 386


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 140/315 (44%), Gaps = 13/315 (4%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILGMQTLEEMIQM 228
           + +P  +++N LL  L     VD AE   +  ++ +V P+  T+N  I G+  + ++ + 
Sbjct: 151 RHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKA 210

Query: 229 GH----------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           G           AP   TYN+ ID +CK         +   ++       SPTA T+ ++
Sbjct: 211 GDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVL 270

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I    +N        +   M   G    V TY  ++ G+C  GKVEE  K +EEM + G 
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+ +T+ C LK  C      +A      M E    P V  YN+LI +Y  LG+ + A  
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMA 390

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
               M K+G + +V TY  +I G         A  LL+E+  KG++     ++  +  L 
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450

Query: 459 VIGDLGAIHKLSDHM 473
             G++    KL D M
Sbjct: 451 CKGEVRKAVKLLDEM 465



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 154/329 (46%), Gaps = 19/329 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           K +   ++ +  P+I   N ++  LC+ G +  A  + K +K   + P+  TYN L    
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 218 ----GMQT-------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
               G          L+EM++ G +P   T+   I+ +CK      A  +FE M+ +G  
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIA 296

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
            S     TY  +I  L    ++EE   L+  M + G  P+  T+  VL+G C  G + +A
Sbjct: 297 AS---VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADA 353

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
             +++ M  +   PD+V YN  + V       ++A+ +   M + G  P+V TYN LI+ 
Sbjct: 354 NDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITG 413

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +   G+   A     EM ++G   DV TY V+I  L    +V +A  LL+E+   GL+  
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPN 473

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +  +++ +      G++ + +++   M K
Sbjct: 474 HLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M+LK   E ++    P      +L++  CK      A  + + +K + +  +  TYN L 
Sbjct: 250 MLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      G++ +EEM  +G +P+  T+   +  FCK  M+ +A D  + M  +   
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV- 365

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P    Y I+I    +  +ME+  ++   M   G  P+V+TY  ++ G   +G    A
Sbjct: 366 --EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
              L+EM  KG   D+VTYN  +  LC      +A++L   M EVG  P+  TYN +I  
Sbjct: 424 SGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQG 483

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + + G    A+E    M+K     +V TY V I       K++EA  LL E+++K L
Sbjct: 484 FCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCL 540



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 103/239 (43%), Gaps = 25/239 (10%)

Query: 183 LLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           +L   CK G++ D  + I    +  V+P+   YNIL             M   E M + G
Sbjct: 340 VLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKG 399

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +P+  TYN  I  F ++     A+ L + M+ KG  I +    TY ++I AL     + 
Sbjct: 400 ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG--IEADVV-TYNVLIGALCCKGEVR 456

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   LL  M   G  P+  TY  +++G C  G ++ AY+    M       ++VTYN F+
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           K  C     DEA  L   M++    P+  TY  +          +G  E  +  D RGC
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI---------KEGMMEKGYTPDIRGC 566


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 137/295 (46%), Gaps = 25/295 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
           ++LL+ALCK G ++ AE + K+                       ++ G AP    +NT 
Sbjct: 361 SILLNALCKEGNMEKAEEVLKK----------------------FLENGLAPVGVFFNTI 398

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ++ +C+   + +A    E M   G     P   TY  ++    +   MEE    +  M+ 
Sbjct: 399 VNGYCQVGDINKAYTTIEKMEAVGL---RPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVE 455

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G LP+V TY  +++G   +   +  ++ LEEM  KG  P++++Y C +  LC + N  E
Sbjct: 456 KGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILE 515

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  + G M+  G  P+ Q YNMLI      G+   AF  + EM  R     + TY ++I+
Sbjct: 516 AEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILIN 575

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           GL    KV EA  L  E+  KGL      ++S +   S  G++    +L + M+K
Sbjct: 576 GLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKK 630



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 138/279 (49%), Gaps = 21/279 (7%)

Query: 180 LNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-----GMQTLEE-------MI 226
            N +++  C+ G ++ A T  ++++   ++PN  TYN L      M+ +EE       M+
Sbjct: 395 FNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMV 454

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G  P+  TYNT ID + ++ +      + E M  KG     P   +Y  +I  L ++ 
Sbjct: 455 EKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGL---KPNVISYGCLINCLCKDA 511

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            + E   +LG M++ G +P+   Y  +++G C+AGK+++A++F +EM  +   P +VTYN
Sbjct: 512 NILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYN 571

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC      EA  L   +   G    V TYN LIS Y   G    A E +  M K 
Sbjct: 572 ILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKS 631

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           G    ++TY  +I G   C K  E   L+E++  + L++
Sbjct: 632 GIKPTLNTYHRLIAG---CGK--EGLVLVEKIYQEMLQM 665



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 5/256 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +Q   E+++ G  PD F Y  AI    K   +  A +L   M+  G    SP    Y ++
Sbjct: 167 LQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGV---SPGVFVYNVV 223

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  RM++   L   M++    P+  TY  +++G C  G++EEA+   E M  +  
Sbjct: 224 IGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENV 283

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P I+T+N  L  LC  +  +EA R+   M   G  P   TY  L   + + G  D +  
Sbjct: 284 EPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASIT 343

Query: 399 TWHEMDKRGCAQDVDTYC-VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
              E  ++G  Q +D  C ++++ L     +E+A  +L++ +  GL      F++ +   
Sbjct: 344 LSEEAVRKG-VQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGY 402

Query: 458 SVIGDLGAIHKLSDHM 473
             +GD+   +   + M
Sbjct: 403 CQVGDINKAYTTIEKM 418



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 136/333 (40%), Gaps = 53/333 (15%)

Query: 161 ILKQYT--EKIK-VKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNI 216
           I K YT  EK++ V  +P     N L+   C+   ++ AE   K+ V+  V PN  TYN 
Sbjct: 408 INKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNT 467

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L              Q LEEM + G  P+  +Y   I+  CK   + EA  +   M  +G
Sbjct: 468 LIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRG 527

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P A+ Y ++I       ++++ F     M+    +P + TY  ++ G+C  GKV 
Sbjct: 528 VV---PNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVM 584

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY---- 380
           EA     E+  KG   D++TYN  +       N  +AL LY  M + G  P++ TY    
Sbjct: 585 EAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLI 644

Query: 381 ------------------------------NMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                                         N LI  Y E G+   A      M+ +G   
Sbjct: 645 AGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQP 704

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           D  TY  +I G F   ++ +   L+ ++  +GL
Sbjct: 705 DKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGL 737



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 166/379 (43%), Gaps = 40/379 (10%)

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRL 137
           PL +D ++ +    +   + A  + +    +D       + NL ++ L STK      +L
Sbjct: 112 PLFSDMLLSICSESKMVSESAELYMLM--KKDGVLPSVASLNLFLESLVSTKRYEDTLQL 169

Query: 138 VCSMLDYMKRNNKVF----VPVDVLLMILKQYTEKI----KVKTQPEINALNLLLDALCK 189
              +++   R ++      +   V L  LK+  E +    +    P +   N+++  LCK
Sbjct: 170 FSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCK 229

Query: 190 CGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
                      KR+K+  K              +EM+    AP+  TYNT ID +CK   
Sbjct: 230 E----------KRMKDAEK------------LFDEMLDRRVAPNRITYNTLIDGYCKVGQ 267

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           + EA ++ E M+ +      PT  T+  ++  L +   MEE   +L  M   G +PD  T
Sbjct: 268 LEEAFNIRERMKVENV---EPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFT 324

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC--FLKVLCDNKNGDEALRLYGR 367
           Y  + +G    G V+ +    EE   KG    I+ Y C   L  LC   N ++A  +  +
Sbjct: 325 YTTLFDGHLKCGNVDASITLSEEAVRKGV--QILDYTCSILLNALCKEGNMEKAEEVLKK 382

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
            +E G  P    +N +++ Y ++G+ + A+ T  +M+  G   +  TY  ++    +   
Sbjct: 383 FLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKN 442

Query: 428 VEEACFLLEEVVNKGLKLP 446
           +EEA   ++++V KG+ LP
Sbjct: 443 MEEAEKCIKKMVEKGV-LP 460



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 4/215 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +  +   P    ++  + + C +++MV+E+A+L+  M+  G     P+  +  + + +LV
Sbjct: 102 LFSLSSTPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVL---PSVASLNLFLESLV 158

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              R E+   L   ++ SG  PD   Y + ++     G ++ A + +  M   G  P + 
Sbjct: 159 STKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVF 218

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            YN  +  LC  K   +A +L+  M++    P+  TYN LI  Y ++G+ + AF     M
Sbjct: 219 VYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERM 278

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
                   + T+  +++GL     +EEA  +LEE+
Sbjct: 279 KVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEM 313



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 107/261 (40%), Gaps = 17/261 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQ 220
           +P + +   L++ LCK   +  AE I    V   V PNA  YN+L              +
Sbjct: 494 KPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFR 553

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+     P   TYN  I+  CK   V EA +L   +  KG +       TY  +I 
Sbjct: 554 FFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFD---VITYNSLIS 610

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  +++   L   M  SG  P ++TY  ++ G    G V    K  +EM      P
Sbjct: 611 GYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVL-VEKIYQEMLQMNLVP 669

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D V YN  +    ++ +  +A  L+  M   G  P   TYN LI  +F+ G         
Sbjct: 670 DRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLV 729

Query: 401 HEMDKRGCAQDVDTYCVMIDG 421
           ++M  RG     +TY ++I G
Sbjct: 730 NDMKIRGLIPKTETYDILIVG 750



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 119/283 (42%), Gaps = 21/283 (7%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P     N+L+D  C  G L D      + V  ++ P   TYNIL                
Sbjct: 530 PNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENL 589

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             E+ + G + D  TYN+ I  +  A  V +A +L+E M+  G     PT  TY  +I A
Sbjct: 590 ASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGI---KPTLNTYHRLI-A 645

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
               + +     +   M+    +PD   Y  ++      G V++A      M  +G  PD
Sbjct: 646 GCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPD 705

Query: 342 IVTYNCFLKVLCDNKNG--DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            +TYNC   +L   K G   +   L   M   G  P  +TY++LI  + +L + DGA+  
Sbjct: 706 KMTYNCL--ILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVW 763

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + EM + G    V     +I GL +  +  +A  +  E+  KG
Sbjct: 764 YREMFENGFTPSVSICDNLITGLREEGRSHDADVICSEMNMKG 806



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 1/194 (0%)

Query: 265 STISSPTAKTYAIMIVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           S  S+P    ++ M++++    +M  E   L   M   G LP V++    LE +    + 
Sbjct: 104 SLSSTPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRY 163

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E+  +   E+   G  PD   Y   ++      +   A+ L   M   G  P V  YN++
Sbjct: 164 EDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVV 223

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I    +      A + + EM  R  A +  TY  +IDG     ++EEA  + E +  + +
Sbjct: 224 IGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENV 283

Query: 444 KLPYRKFDSYLMQL 457
           +     F+S L  L
Sbjct: 284 EPTIITFNSLLNGL 297


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 190/430 (44%), Gaps = 32/430 (7%)

Query: 67  NMEK--ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDI 124
           N EK  +L SL   +  +    V+   + +  I  RFFMW     +Y  +P   N ++ +
Sbjct: 53  NWEKNSSLKSLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKL 112

Query: 125 LSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-PEINALNLL 183
           + S+        ++ +++    R  K  +    L+    +  E    +   P  ++L + 
Sbjct: 113 IVSSGLYRVAHAVIVALIKECSRCEKEMLK---LMYCFDELREVFGFRLNYPCYSSLLMS 169

Query: 184 LDAL-----------------CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           L  L                    G++DY   +    KN     A  +       + +++
Sbjct: 170 LAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMF-------MSKIL 222

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           ++G   D+    + +  FC+   + +A  +F+ M  +     +P + +Y+I+I  L +  
Sbjct: 223 KIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKE--VTCAPNSVSYSILIHGLCEVG 280

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R+EE F L   M   GC P   TY  +++ +C  G +++A+   +EM  +G  P++ TY 
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYT 340

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC +   +EA  +  +M++   +PSV TYN LI+ Y + G    AFE    M+KR
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
            C  +V T+  +++GL    K  +A  LL+ +++ GL      ++  +  L   G +   
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTA 460

Query: 467 HKLSDHMRKF 476
           +KL   M  F
Sbjct: 461 YKLLSSMNCF 470



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 16/283 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           +V   P   + ++L+  LC+ G ++ A  +  ++  K  +P+  TY +L           
Sbjct: 259 EVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID 318

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                 +EMI  G  P+  TY   ID  C+   + EA  +   M  K      P+  TY 
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKM-VKDRIF--PSVITYN 375

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I    ++ R+   F LL  M    C P+V T+ E++EG+C  GK  +A   L+ M + 
Sbjct: 376 ALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN 435

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PDIV+YN  +  LC   + + A +L   M      P   T+  +I+ + + G+ D A
Sbjct: 436 GLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVA 495

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
                 M ++G + D  T   +IDG+    K  +A F+LE +V
Sbjct: 496 SAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLV 538



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 133/327 (40%), Gaps = 51/327 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           + E I    +P ++   +L+D LC+ G ++ A  +C++ VK+++ P+  TYN L      
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCK 383

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + L  M +    P+  T+N  ++  C+     +A  L + M   G    SP 
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG---LSPD 440

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y ++I  L +   M   + LL  M      PD  T+  ++   C  GK + A  FL 
Sbjct: 441 IVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLG 500

Query: 332 EMGNKGYPPDIVT-----------------------------------YNCFLKVLCDNK 356
            M  KG   D VT                                    N  L +L    
Sbjct: 501 LMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGC 560

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
              E L + G++ ++G  PSV TY  L+      G+  G+F     M   GC  +V  Y 
Sbjct: 561 KVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYT 620

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++I+GL    +VEEA  LL  + + G+
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGV 647



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 130/319 (40%), Gaps = 59/319 (18%)

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNA 211
           VP   LL +++      K   +P +   N L++ LC+ G    A  + KR + N + P+ 
Sbjct: 388 VPAFELLTVME------KRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441

Query: 212 NTYNILGMQTLEEMIQMGH----------------APDNFTYNTAIDTFCKARMVTEAAD 255
            +YN+L    ++ + + GH                 PD  T+   I+ FCK      A+ 
Sbjct: 442 VSYNVL----IDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASA 497

Query: 256 LFEFMRTKGSTISSPTAKTYA--------------------------------IMIVALV 283
               M  KG ++   T  T                                  +++  L 
Sbjct: 498 FLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLS 557

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  +++E  ++LG +   G +P V TY  +++G+  +G +  +++ LE M   G  P++ 
Sbjct: 558 KGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVY 617

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            Y   +  LC     +EA +L   M + G  P+  TY +++  Y   G+ D A ET   M
Sbjct: 618 PYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAM 677

Query: 404 DKRGCAQDVDTYCVMIDGL 422
            +RG   +   Y  ++ G 
Sbjct: 678 VERGYELNDRIYSSLLQGF 696



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 135/355 (38%), Gaps = 58/355 (16%)

Query: 168 KIKVKTQPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
           K+++ T P  ++LN++LD L K C + +    + K  K  + P+  TY  L         
Sbjct: 539 KMRILTTP--HSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                + LE M   G  P+ + Y   I+  C+   V EA  L   M+  G    SP   T
Sbjct: 597 ITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV---SPNHVT 653

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK------------ 322
           Y +M+   V N +++     +  M+  G   +   Y  +L+G  L+ K            
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSD 713

Query: 323 ----------VEEAYKFLEEMGNKGYPPDIVTYNCFLKV--LCDNKNGDEALRLYGRMIE 370
                     + E    +E++G        ++  C   V  LC     DE+  L   ++E
Sbjct: 714 IALRETDPECINELISVVEQLGG------CISGLCIFLVTRLCKEGRTDESNDLVQNVLE 767

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G +   +  ++++  Y    +     E    + K G      ++C++I GL      E 
Sbjct: 768 RGVFLE-KAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAER 826

Query: 431 ACFLLEE------VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           A  L+ E      VV K   L Y +    LM+    GD   +  L D +     P
Sbjct: 827 ARELVMELLTSNGVVEKSGVLTYVE---CLMEGDETGDCSEVIDLVDQLHCRERP 878


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 16/286 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K + ++   N ++D+LCK   VD A  + K ++ K ++PN  TY+ L             
Sbjct: 255 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 314

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            Q L +MI+    P+  T+N  ID F K     EA  L++ M  +      P   TY  +
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI---DPDIFTYNSL 371

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +     +DR+++   +   M++  C PDV TY  +++G C + +VE+  +   EM ++G 
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D VTY   ++ L  + + D A +++ +M+  G  P + TY++L+      G+ + A E
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 491

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +  M K     D+  Y  MI+G+    KV++   L   +  KG+K
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 537



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 130/287 (45%), Gaps = 15/287 (5%)

Query: 201 KRVKNKVKPNANTYNI------------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
           + V+   +PN  TY +            L +  L +M       D   +NT ID+ CK R
Sbjct: 215 RMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 274

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
            V +A +LF+ M TKG     P   TY+ +I  L    R  +   LL  MI     P++ 
Sbjct: 275 HVDDALNLFKEMETKGI---RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T+  +++     GK  EA K  ++M  +   PDI TYN  +   C +   D+A +++  M
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +   C+P V TYN LI  + +    +   E + EM  RG   D  TY  +I GLF     
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 451

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           + A  + +++V+ G+      +   L  L   G L    ++ D+M+K
Sbjct: 452 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 146/303 (48%), Gaps = 23/303 (7%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
           VD  L + K+   K     +P +   + L+  LC  G   D ++ +   ++ K+ PN  T
Sbjct: 276 VDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +N L              +  ++MI+    PD FTYN+ ++ FC    + +A  +FEFM 
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 392

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           +K      P   TY  +I    ++ R+E+   L   M + G + D  TY  +++G+   G
Sbjct: 393 SKDCF---PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
             + A K  ++M + G PPDI+TY+  L  LC+N   ++AL ++  M +      +  Y 
Sbjct: 450 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 509

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVV 439
            +I    + G+ D  ++ +  +  +G   +V TY  MI GL  CSK  ++EA  LL+++ 
Sbjct: 510 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL--CSKRLLQEAYALLKKMK 567

Query: 440 NKG 442
             G
Sbjct: 568 EDG 570



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 47/288 (16%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           ++ I+ K  P +   N L+DA  K G    AE +    +K  + P+  TYN L       
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------- 264
                  Q  E M+     PD  TYNT I  FCK++ V +  +LF  M  +G        
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438

Query: 265 ------------------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                   S    P   TY+I++  L  N ++E+   +  +M  
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S    D+  Y  ++EGMC AGKV++ +     +  KG  P++VTYN  +  LC  +   E
Sbjct: 499 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 558

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           A  L  +M E G  P+  TYN LI  +   G+   + E   EM  R C
Sbjct: 559 AYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM--RSC 604



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 16/285 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           QP +    ++++ LCK G  D A  +  +++  K++ +   +N +             + 
Sbjct: 222 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 281

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM   G  P+  TY++ I   C     ++A+ L   M  K     +P   T+  +I 
Sbjct: 282 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI---NPNLVTFNALID 338

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A V+  +  E   L   MI     PD+ TY  ++ G C+  ++++A +  E M +K   P
Sbjct: 339 AFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 398

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTYN  +K  C +K  ++   L+  M   G      TY  LI   F  G+ D A + +
Sbjct: 399 DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 458

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            +M   G   D+ TY +++DGL +  K+E+A  + + +    +KL
Sbjct: 459 KQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 16/288 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K +  P I   N LL A+ K    D   ++ ++++  ++     TYNIL          
Sbjct: 77  VKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQI 136

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  L +M+++G+ P   T ++ ++ +C  + +++A  L + M   G     P   T+
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY---RPDTITF 193

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L  +++  E  +L+  M+  GC P++ TY  V+ G+C  G  + A   L +M  
Sbjct: 194 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA 253

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
                D+V +N  +  LC  ++ D+AL L+  M   G  P+V TY+ LIS     G    
Sbjct: 254 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 313

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A +   +M ++    ++ T+  +ID      K  EA  L ++++ + +
Sbjct: 314 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I+I    +  ++    +LLG M+  G  P + T   +L G C   ++ +A   +++M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY PD +T+   +  L  +    EA+ L  RM++ GC P++ TY ++++   + G+ 
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A    ++M+      DV  +  +ID L     V++A  L +E+  KG++     + S 
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +  L   G    A   LSD + K  NP
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINP 328



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 1/179 (0%)

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G   SS +     I+   L  + ++++   L G M+ S  LP +  + ++L  +    K 
Sbjct: 43  GRAFSSGSGDYREILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF 101

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +      E+M        + TYN  +   C       AL L G+M+++G  PS+ T + L
Sbjct: 102 DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSL 161

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           ++ Y        A     +M + G   D  T+  +I GLF  +K  EA  L++ +V +G
Sbjct: 162 LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 16/187 (8%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  L   G  D A+ + K+ V + V P+  TY+IL             ++  + M +  
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              D + Y T I+  CKA  V +  DLF  +  KG     P   TY  MI  L     ++
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV---KPNVVTYNTMISGLCSKRLLQ 557

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E ++LL  M   G LP+  TY  ++      G    + + + EM +  +  D  T     
Sbjct: 558 EAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 617

Query: 350 KVLCDNK 356
            +L D +
Sbjct: 618 NMLHDGR 624


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 183/455 (40%), Gaps = 86/455 (18%)

Query: 47  SVSDVAKLYEAIIDNSNAYDN---MEKALDSLGVPLTTDSVVGV-------LQRFQFEEK 96
           S  D+    + + +N+N  D+    E+ L    +P    S+  +       L     +  
Sbjct: 51  SNQDIRFYNDTVFNNTNGLDSGTEWERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVP 110

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
            +   F WAG Q  Y H    Y ++ID L +    A +F+   ++L  MK+   VF    
Sbjct: 111 TSMELFQWAGTQKGYCHMFDVYYMLIDKLGA----AGEFKTTDALLMQMKQEGIVFRE-S 165

Query: 157 VLLMILKQYTE--------------KIKVKTQPEINALNLLLDALCKCGLVDYAETICKR 202
           + ++I+K Y                +     +P   + N++LD L            C  
Sbjct: 166 LFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGN--------CP- 216

Query: 203 VKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
              KV PN             EM+  G +P  +T+   +   C    V  A  L + M  
Sbjct: 217 ---KVVPNV----------FYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTR 263

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P A  Y  +I AL +  R+ E   LL  M+  GC+PDV+T+ + + G+C   +
Sbjct: 264 HGCV---PNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLR 320

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR--------------- 367
           + EA K ++ M  +G+ P+  TY   +  LC     DEA  L  +               
Sbjct: 321 IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLING 380

Query: 368 -----------------MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                            M+ VGC P + TYN LI    + G    A E  +EM  +GC  
Sbjct: 381 YVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEP 440

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +V TY ++ID      ++EEA  +L+E+  KGL L
Sbjct: 441 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLAL 475



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 16/288 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           + V   P+I   N L+  LCK G +  A  +   ++ K  +PN  TY IL          
Sbjct: 399 LSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRL 458

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 L+EM   G A +   YN  I   CK   V +A ++F  M +KG     P   T+
Sbjct: 459 EEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGC---KPDIFTF 515

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L + ++ EE   L   M+  G + +  TY  ++      G ++EA K + +M  
Sbjct: 516 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 575

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G P D +TYN  +K LC   N ++ L L+  M+  G  P+  + N+LI+     G    
Sbjct: 576 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQH 635

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A E   +M  RG   D+ TY  +I+GL    + +EA  L +++  +G+
Sbjct: 636 ALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 683



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 144/317 (45%), Gaps = 16/317 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTLEEMIQMGHA-- 231
           P++N  N  +  LCK   +  A  +  R +     PN+ TY +L M  L  M ++  A  
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVL-MHGLCRMGKVDEARM 361

Query: 232 -------PDNFTYNTAIDTFC-KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
                  P+   +NT I+ +  + R+    A + E M + G     P   TY  +I+ L 
Sbjct: 362 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGC---GPDIFTYNTLILGLC 418

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +     L+  M   GC P+V TY  +++  C  G++EEA   L+EM  KG   + V
Sbjct: 419 KKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 478

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            YNC +  LC ++   +AL ++G M   GC P + T+N LI    ++ + + A   + +M
Sbjct: 479 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 538

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              G   +  TY  +I        ++EA  L+ +++ +G  L    ++  +  L   G++
Sbjct: 539 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 598

Query: 464 -GAIHKLSDHMRKFYNP 479
              +    D M K  NP
Sbjct: 599 EKGLALFEDMMSKGLNP 615



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 27/300 (9%)

Query: 163 KQYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++   ++++K  +P +    +L+D  CK G ++ A  +   +  K +  NA  YN L   
Sbjct: 427 RELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISA 486

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +    +M   G  PD FT+N+ I   CK     EA  L++ M  +G   +
Sbjct: 487 LCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIAN 546

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +    TY  +I A ++   M+E   L+  M+  GC  D  TY  +++ +C AG +E+   
Sbjct: 547 T---ITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLA 603

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E+M +KG  P+ ++ N  +  LC   N   AL     MI  G  P + TYN LI+   
Sbjct: 604 LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC 663

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMI-----DGLFDCSKVEEACFLLEEVVNKGL 443
           + G    A   + ++   G   D  TY  +I     +G+FD     +A  LL   V+ G 
Sbjct: 664 KTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFD-----DAHLLLSRGVDSGF 718



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 16/234 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
           +P+I   N L+  LCK    + A  + +  +   V  N  TYN L             ++
Sbjct: 509 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 568

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + +M+  G   D+ TYN  I   C+A  + +   LFE M +KG    +P   +  I+I 
Sbjct: 569 LVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL---NPNNISCNILIN 625

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +   ++     L  MI+ G  PD+ TY  ++ G+C  G+ +EA    +++  +G  P
Sbjct: 626 GLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 685

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           D +TYN  +   C     D+A  L  R ++ G  P+  T+ +L+S + + G+ +
Sbjct: 686 DAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 16/311 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           L+ + E      +P++   N L+  LC+ GL+ +A + + + V++   P+  TYNI+   
Sbjct: 274 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVING 333

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        + + I  G+ PD FT+NT ID +CK   +  A  L E M   G    
Sbjct: 334 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGI--- 390

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P A TY  ++  L +  + +E       MI  GC P+  TY  ++E  C   ++EEA  
Sbjct: 391 APDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASG 450

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            +  M   G  PD +++N  +   C N + D A  L+ ++ E G   +  T+N+LI  Y 
Sbjct: 451 VIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYS 510

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
                  A + + EM  +G   D+ TY V++DG    + V+ A   L E+V+KG      
Sbjct: 511 SKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMA 570

Query: 449 KFDSYLMQLSV 459
            F   L  L++
Sbjct: 571 TFGRVLNSLAM 581



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 143/333 (42%), Gaps = 44/333 (13%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N+ +  LC+ G ++ A  + + +   + P+  TYN L              Q L  M+  
Sbjct: 154 NIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQ 213

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------STISS---------- 269
           G  PD+FTYNT ID +CK  M+ EA +L +    KG         S I+           
Sbjct: 214 GCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERA 273

Query: 270 -------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
                        P    Y  ++  L +   +     ++  M+  GC PD+ TY  V+ G
Sbjct: 274 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVING 333

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C  G + +A   + +   KGY PD+ T+N  +   C     D AL+L  RM   G  P 
Sbjct: 334 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPD 393

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TYN +++   + G+     ET+ EM  +GC  +  TY ++I+     +++EEA  ++ 
Sbjct: 394 AITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 453

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            +   GL      F++ +      GDL   + L
Sbjct: 454 RMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLL 486



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 147/321 (45%), Gaps = 15/321 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--GM-- 219
           + E ++    P++   N +L ALC+ G +++    + K +K  +  N  T NI   G+  
Sbjct: 103 FDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCE 162

Query: 220 -QTLEEMIQMGH------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
              LEE + +        APD  TYNT +   CK   V EAA     M  +G     P  
Sbjct: 163 GGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCI---PDD 219

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I    + D ++E   LL   I  G +PD  TY  ++ G+C  G VE A +   E
Sbjct: 220 FTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNE 279

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
              K   PD+V YN  +K LC       AL++   M+E GC P + TYN++I+   ++G 
Sbjct: 280 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGN 339

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
              A    ++   +G   DV T+  MIDG     K++ A  L+E +   G+      ++S
Sbjct: 340 ISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNS 399

Query: 453 YLMQLSVIGDLGAIHKLSDHM 473
            L  L   G    +++  + M
Sbjct: 400 VLNGLCKAGKAKEVNETFEEM 420



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 133/275 (48%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LC  G V+ A  +    + K +KP+   YN L             +Q + EM++ G
Sbjct: 260 LINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDG 319

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD +TYN  I+  CK   +++AA +      KG     P   T+  MI    +  +++
Sbjct: 320 CHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYL---PDVFTFNTMIDGYCKRLKLD 376

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               L+  M   G  PD  TY  VL G+C AGK +E  +  EEM  KG  P+ +TYN  +
Sbjct: 377 SALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILI 436

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           +  C     +EA  +  RM + G  P   ++N LI  +   G+ DGA+  + ++D++G +
Sbjct: 437 ENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYS 496

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              DT+ ++I        ++ A  +  E+++KG K
Sbjct: 497 ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 531



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 16/300 (5%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYN 215
           ++L  L+   E ++    P+I   N++++ LCK G + D A  +   +     P+  T+N
Sbjct: 304 LILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFN 363

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            +             +Q +E M   G APD  TYN+ ++  CKA    E  + FE M  K
Sbjct: 364 TMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILK 423

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P A TY I+I    + +++EE   ++  M   G +PD  ++  ++ G C  G +
Sbjct: 424 GC---RPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDL 480

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           + AY   +++  KGY     T+N  +       N   A +++G MI  G  P + TY +L
Sbjct: 481 DGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVL 540

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +    +    D A+    EM  +G    + T+  +++ L    +V EA  ++  +V  G+
Sbjct: 541 VDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGV 600



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 106/216 (49%), Gaps = 16/216 (7%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL-----GMQTLEE---- 224
           P+    N +L+ LCK G   +  ET  + +    +PNA TYNIL      +  LEE    
Sbjct: 392 PDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGV 451

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M Q G  PD  ++NT I  FC+   +  A  LF+ +  KG    S TA T+ I+I A
Sbjct: 452 IVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGY---SATADTFNILIGA 508

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                 M+    + G MI+ G  PD+ TY+ +++G C A  V+ AY  L EM +KG+ P 
Sbjct: 509 YSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPS 568

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           + T+   L  L  N    EA+ +   M+ +G  P V
Sbjct: 569 MATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEV 604



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 100/256 (39%), Gaps = 39/256 (15%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M+  G APD  T+   I +FC       A  L   +  +G  +  P A  Y  ++  L 
Sbjct: 35  RMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDV-KPLA--YCTVVRGLY 91

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLE---------------------------- 315
            +    +   L   M+     PDV+T+  VL                             
Sbjct: 92  AHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKF 151

Query: 316 -------GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
                  G+C  G++EEA   +E M +    PD+VTYN  ++ LC +    EA +   RM
Sbjct: 152 TCNIWIRGLCEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRM 210

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  GC P   TYN +I  Y +      A E   +   +G   D  TYC +I+GL     V
Sbjct: 211 MNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDV 270

Query: 429 EEACFLLEEVVNKGLK 444
           E A  L  E   K LK
Sbjct: 271 ERALELFNEAQAKDLK 286



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 4/214 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P    YN  +D         +A  ++  M + G    +P A+T+ + I +     R 
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGV---APDARTHTVRIKSFCITGRP 61

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
                LL  +   GC      Y  V+ G+   G   +A    +EM  +   PD+ T+N  
Sbjct: 62  HVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNV 121

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           L  LC   +  E+  L  ++++ G   +  T N+ I    E G  + A      MD    
Sbjct: 122 LHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-I 180

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           A DV TY  ++ GL   SKV+EA   L  ++N+G
Sbjct: 181 APDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQG 214



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G PP    YN  +  L +    D+A ++Y RM+  G  P  +T+ + I  +   G P  A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
                 + +RGC      YC ++ GL+      +A  L +E++ + +      F++ L  
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 457 LSVIGDL 463
           L   GD+
Sbjct: 125 LCQKGDI 131



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 72/178 (40%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           GC P    Y  +++ +      ++A+K    M + G  PD  T+   +K  C       A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           LRL   + E GC      Y  ++   +  G    A   + EM +R    DV T+  ++  
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           L     + E+  LL +V+ +G+ +     + ++  L   G L     L + M  +  P
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAP 182


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 151/330 (45%), Gaps = 22/330 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M L+ + E  +    P +   N ++D  CK    D A    + +  K ++PN  T+N++ 
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMII 60

Query: 218 -GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
            G+          + L EM + G+ PD  TYNT ++ +CK     +A  L   M   G  
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGL- 119

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
             SP   TY  +I ++ +   +         M   G  P+  TY  ++ G    G ++EA
Sbjct: 120 --SPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEA 177

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           Y+ L EM   G+ P IVTYN  +   C     +EA+ L   M+  G  P V +Y+ +IS 
Sbjct: 178 YRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISG 237

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +    E D AF+   EM  +    D  TY  +I GL +  ++ EAC + +E++   +KLP
Sbjct: 238 FARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLT--IKLP 295

Query: 447 YRKFDSYLMQLSVI---GDLGAIHKLSDHM 473
             +F +Y   ++     GDL     L D M
Sbjct: 296 PDEF-TYTTLINAYCKEGDLNKALHLHDEM 324



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 142/310 (45%), Gaps = 51/310 (16%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P +   N++++ LC+ G L + +E + +  +    P+  TYN L             + 
Sbjct: 50  EPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALV 109

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM++ G +P+  TY + I++ CKA  +  A + F+ M  +G     P  +TY  +I 
Sbjct: 110 LHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGL---CPNERTYTTIIN 166

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              Q   ++E + +L  M  SG +P + TY  ++ G C+ G++EEA   L++M  KG  P
Sbjct: 167 GFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLP 226

Query: 341 DI-----------------------------------VTYNCFLKVLCDNKNGDEALRLY 365
           D+                                   VTY+  ++ LC+ +   EA  ++
Sbjct: 227 DVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMF 286

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M+ +   P   TY  LI+ Y + G+ + A     EM ++G   D  TY V+I+GL   
Sbjct: 287 QEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQ 346

Query: 426 SKVEEACFLL 435
           ++ +EA  LL
Sbjct: 347 ARSKEARRLL 356



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 36/218 (16%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG----------------------- 334
           M  +GCLP+V TY  +++G C   + +EA+ FL  MG                       
Sbjct: 9   MERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGR 68

Query: 335 ------------NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
                        KGY PD VTYN  +   C   N  +AL L+  M+  G  P+V TY  
Sbjct: 69  LKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTS 128

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+   + G  + A E + +M  RG   +  TY  +I+G      ++EA  +L E+   G
Sbjct: 129 LINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSG 188

Query: 443 LKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNP 479
                  +++ +    V+G +  AI  L D + K   P
Sbjct: 189 FIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLP 226



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 51/268 (19%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P +     L++++CK G ++ A     ++  + + PN  TY  +      
Sbjct: 111 HAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQ 170

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + L EM + G  P   TYN  I+  C    + EA  L + M  KG     P 
Sbjct: 171 QGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVL---PD 227

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC------------- 318
             +Y+ +I    +N  ++  F +   MI    LPD  TY  +++G+C             
Sbjct: 228 VVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQ 287

Query: 319 ----------------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
                                   G + +A    +EM  KG+ PD VTYN  +  L    
Sbjct: 288 EMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQA 347

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLI 384
              EA RL  ++      PS  TYN LI
Sbjct: 348 RSKEARRLLLKLFYDDSIPSAVTYNTLI 375



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 113/277 (40%), Gaps = 31/277 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N L++  C  G ++ A  + + +  K V P+  +Y+ +              Q 
Sbjct: 191 PSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQM 250

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EMI     PD  TY++ I   C+ R +TEA D+F+ M T       P   TY  +I A
Sbjct: 251 KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLT---IKLPPDEFTYTTLINA 307

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + +   L   MI  G LPD  TY  ++ G+    + +EA + L ++      P 
Sbjct: 308 YCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPS 367

Query: 342 IVTYNCFL---------------KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            VTYN  +               K  C     DEA +++  MI     P+   YN++I  
Sbjct: 368 AVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHG 427

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +  +G    A++ + EM          T   ++  LF
Sbjct: 428 HCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALF 464



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 100/265 (37%), Gaps = 40/265 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E + +K  P+      L++A CK G ++ A                      +   +E
Sbjct: 286 FQEMLTIKLPPDEFTYTTLINAYCKEGDLNKA----------------------LHLHDE 323

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI----- 279
           MIQ G  PD  TYN  I+   K     EA  L   +    S    P+A TY  +I     
Sbjct: 324 MIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSI---PSAVTYNTLIENCCN 380

Query: 280 ------VALVQN----DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
                 VALV+       M+E   +   MIN    P+ + Y  ++ G C  G V +AYK 
Sbjct: 381 IEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKL 440

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            +EM +  + P  VT    +K L       E   + G ++        +   +L+ +  +
Sbjct: 441 YKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQK 500

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDT 414
            G  D  F    EM K G      T
Sbjct: 501 EGNMDMVFNLLTEMAKDGLIPSTGT 525


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 129/291 (44%), Gaps = 17/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL------- 217
           E ++   +P +     L+D LCK G  + A  +  ++   +  KPN  TY  +       
Sbjct: 323 EMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKE 382

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                    L  M + G  P+  TY   ID  CKA     A +L + M  +G T   P  
Sbjct: 383 EKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFT---PNI 439

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I  L +  R  E + LL   + SG   D  TY  ++   C     ++A      
Sbjct: 440 FTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSR 499

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  PD+ TYN  +   C  K  +E+ +L+   + +G  P+ +TY  +I  Y   G 
Sbjct: 500 MFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGH 559

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              A + +H+M   GC  D  TY  +I GL + SK++EAC L E +++ GL
Sbjct: 560 ISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGL 610



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 24/312 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + + +++   P +   + L++ LCK G +  A                       + LEE
Sbjct: 286 FKKWVQMGLNPNLINFSSLINGLCKIGSIKQA----------------------FEMLEE 323

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M++ G  P+ +T+   ID  CK     +A  LF  ++   S    P   TY  MI    +
Sbjct: 324 MVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLF--LKLVRSDNYKPNVYTYTCMINGYCK 381

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            +++     LL  M   G +P+ +TY  +++G C AG    AY+ ++ MG +G+ P+I T
Sbjct: 382 EEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFT 441

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +  LC      EA +L  R ++ G      TY +LIS +    +   A   +  M 
Sbjct: 442 YNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMF 501

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
           K G   D+ TY V+I       KVEE+  L EE V  GL      + S +      G + 
Sbjct: 502 KVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHIS 561

Query: 465 AIHKLSDHMRKF 476
           +  K    MR +
Sbjct: 562 SAIKFFHKMRDY 573



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 138/342 (40%), Gaps = 27/342 (7%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE 176
           A+ L + ++ S  YK   +   C +  Y K        ++   M+L +  E+  V   P 
Sbjct: 352 AFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEK-----LNRAEMLLIRMKEQGLV---PN 403

Query: 177 INALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLE 223
            N    L+D  CK G    A E +    K    PN  TYN +              + L 
Sbjct: 404 TNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLR 463

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
             ++ G   D  TY   I  FC+     +A  +F  M   G     P   TY ++I    
Sbjct: 464 RGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGL---QPDMHTYNVLIATFC 520

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  ++EE   L    +  G LP   TY  ++ G C  G +  A KF  +M + G  PD +
Sbjct: 521 RQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSI 580

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  LC+    DEA +LY  MI+ G  P   T   L   Y + G+   A      +
Sbjct: 581 TYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERL 640

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +K+   + V+T   +I  L    KV  A     ++++K L +
Sbjct: 641 EKKLWIRTVNT---LIRKLCSEKKVGVAALFFHKLLDKDLNV 679



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 96/199 (48%), Gaps = 3/199 (1%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           + +F +   + EA ++   M+  G  + +        + +AL   D  E+ F     M++
Sbjct: 165 VRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFD---EMLD 221

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
              +PD ++YK ++ G C  G++ +  ++L++M  +GY  D  T    +    +    + 
Sbjct: 222 RAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNR 281

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A   + + +++G  P++  ++ LI+   ++G    AFE   EM ++G   +V T+  +ID
Sbjct: 282 AFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALID 341

Query: 421 GLFDCSKVEEACFLLEEVV 439
           GL      E+A  L  ++V
Sbjct: 342 GLCKKGWTEKAFRLFLKLV 360



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           M+ +  +  +++E  +++  M N G +        V++     G V+ A K  +EM ++ 
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRA 223

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD  +Y   +   C      +  R    MIE G      T  ++IS + E G  + AF
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAF 283

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + +  + G   ++  +  +I+GL     +++A  +LEE+V KG K
Sbjct: 284 WYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWK 330


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 28/278 (10%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           +L Q T K      P I     L+D LCK G V  A                  N+L + 
Sbjct: 110 LLNQMTSK---TVTPNIRTFTTLVDGLCKDGEVKKAR-----------------NVLAI- 148

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               MI+    P+  TYN+ +D +   + V +A  LF  +  +G T   P  ++Y +MI 
Sbjct: 149 ----MIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMT---PNVRSYKVMIN 201

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +N  ++E  +L   M +   +PD   Y  +++G+C + ++ + + F+ EM ++G P 
Sbjct: 202 GLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPA 261

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +I+TYN  L  LC N   D+A+ L  ++   G  P++ TY +L+    + G    A E +
Sbjct: 262 NIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVY 321

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            ++  +G   D   Y VMI+GL     ++EA  LL ++
Sbjct: 322 QDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKM 359



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 32/314 (10%)

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYN------- 215
            + E++ VK  P++   N ++D LCK  LV D  +   + +  K+ P+  TYN       
Sbjct: 28  NHIERLLVK--PDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLL 85

Query: 216 --------------ILG-----MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
                         ILG     +  L +M      P+  T+ T +D  CK   V +A ++
Sbjct: 86  NFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNV 145

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M  +      P   TY  ++        + +   L   +   G  P+V +YK ++ G
Sbjct: 146 LAIMIKQRV---EPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMING 202

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C    V+EA    +EM +K   PD V YN  +  LC ++   +     G M + G   +
Sbjct: 203 LCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPAN 262

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           + TYN L+    +  + D A     ++  +G   ++ TY +++DGL    ++ +A  + +
Sbjct: 263 IITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQ 322

Query: 437 EVVNKGLKLPYRKF 450
           +++NKG +L  R +
Sbjct: 323 DLLNKGYQLDARIY 336



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 56/226 (24%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           H  N   + +AYN +ID L  ++     +  +  M D                       
Sbjct: 220 HSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHD----------------------- 256

Query: 167 EKIKVKTQP-EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEE 224
                + QP  I   N LLD LCK   VD A T+  ++KN+ ++PN  TY IL       
Sbjct: 257 -----RGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTIL------- 304

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
                           +D  CK   + +A ++++ +  KG  +    A+ Y +MI  L +
Sbjct: 305 ----------------VDGLCKNGRLRDAQEVYQDLLNKGYQLD---ARIYTVMINGLCK 345

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              ++E  SLL  M ++ C PD  TY+  +  +  + + E  Y F+
Sbjct: 346 EGFLDEALSLLSKMEDNKCTPDGVTYEITIRALFESDRNEILYIFI 391



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 24/142 (16%)

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGY----------PPDIVTYNCFLKVLCDNKNGDEALR 363
           ++G+CL G+V +A  F + +  KG+           PD+V YN  + +LC +K   +   
Sbjct: 1   MKGLCLNGEVRKALYFHDHVIAKGFHLNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCD 60

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFE--------------LGEPDGAFETWHEMDKRGCA 409
           LY  MI+   +P V TYN LI                   LG+   A    ++M  +   
Sbjct: 61  LYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVT 120

Query: 410 QDVDTYCVMIDGLFDCSKVEEA 431
            ++ T+  ++DGL    +V++A
Sbjct: 121 PNIRTFTTLVDGLCKDGEVKKA 142


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 142/327 (43%), Gaps = 56/327 (17%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
           ++   +P+    N+ +D LCK   VD A  + K++ + K  P   TY  L          
Sbjct: 34  VRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRL 93

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              M  LE+M++ G++P   TY   ID   KA  V EA  +F  M   G     P A  Y
Sbjct: 94  DEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGC---RPDAFVY 150

Query: 276 AIMIVALVQNDRMEECFSL-----------------------------LGHMINS----- 301
             +I  L ++ + EE ++L                              G ++ +     
Sbjct: 151 TALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFD 210

Query: 302 ------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
                 G +PD  TY  +++G+C  G+VEE  +   EM N+GY PD VTY   +      
Sbjct: 211 DEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKA 270

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           K   +A R+Y +M++ G   S  TYN+++    + G    A+ T+  M++RGC   V TY
Sbjct: 271 KMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTY 330

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKG 442
             ++DG      V  A  L   ++++G
Sbjct: 331 SALMDGFCSEGNVSAAVELFRRMLDRG 357



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 124/274 (45%), Gaps = 30/274 (10%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            P++ A  ++++ LC+   +D A ++                      LE  ++ G  PD
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSV----------------------LERAVRAGCEPD 41

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TYN  ID  CKA  V +A  L + M  K      PT  TY  ++  L++  R++E  +
Sbjct: 42  YVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCL---PTTVTYTALVDGLLKAGRLDEAMA 98

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           +L  M+  G  P + TY  V++G+  AG+VEEA +   +M   G  PD   Y   +K LC
Sbjct: 99  VLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLC 158

Query: 354 DNKNGDEALRLY----GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW-HEMDKRGC 408
            +   +EA  LY     R       P V TY  LI    + G    A + +  E  +RG 
Sbjct: 159 KSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGF 218

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             D  TY  +IDGL    +VEE C    E+ N+G
Sbjct: 219 IPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG 252



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 145/317 (45%), Gaps = 24/317 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR---VKNK-VKPNANTYNIL------------G 218
           P+      ++D LCK G V   E  C+R   ++N+  +P+A TY  L             
Sbjct: 220 PDAVTYTSIIDGLCKLGRV---EEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKA 276

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +   +M+Q G      TYN  +D  CKA  V EA   F  M  +G      T  TY+ +
Sbjct: 277 HRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV---ATVVTYSAL 333

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +        +     L   M++ GC P++ +Y  ++ G+C AGK+ +AY + E++  +  
Sbjct: 334 MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 393

Query: 339 PPDIVTYNCFLKVLCDNKNG-DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
            PD+ T+N FL  LC   +   + + L+  M+  G  P++ +Y++L+      G  + A 
Sbjct: 394 CPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVAL 453

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           E + EM  RG A DV  +  +I  L    +V+EA  +  E+  +     +  + S L  L
Sbjct: 454 EIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAW-SYWSLLDGL 512

Query: 458 SVIGDLGAIHKLSDHMR 474
           S    +     LS HM+
Sbjct: 513 SRCERMEEARLLSFHMK 529



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 132/290 (45%), Gaps = 26/290 (8%)

Query: 174 QPEINALNLLLDALCKCGLVD-----YAETICKRVKNKVKPNANTYNIL------GMQTL 222
           +P+      L+  LCK G  +     Y E   ++      P+  TY  L        + L
Sbjct: 144 RPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRIL 203

Query: 223 E-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           E       E ++ G  PD  TY + ID  CK   V E  + F  MR +G     P A TY
Sbjct: 204 EARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY---EPDAVTY 260

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           A +I   ++   + +   +   M+ SG +    TY  +L+G+C AG+V EAY     M  
Sbjct: 261 AALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEE 320

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G    +VTY+  +   C   N   A+ L+ RM++ GC P++ +YN++I      G+   
Sbjct: 321 RGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAK 380

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKG 442
           A+  + ++ +R    DV T+   + GL  C +   V +   L E +V++G
Sbjct: 381 AYFYFEKLLQRRLCPDVYTFNAFLHGL--CQRLDTVSDGVELFESMVSQG 428



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 75/142 (52%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C PD+  +  V+ G+C   +++EA+  LE     G  PD VTYN F+  LC  +  D+A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +L  +M E  C P+  TY  L+    + G  D A     +M ++G +  + TY V+IDGL
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 423 FDCSKVEEACFLLEEVVNKGLK 444
               +VEEA  +  +++  G +
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCR 144



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 19/156 (12%)

Query: 165 YTEKI-KVKTQPEINALNLLLDALCKC--GLVDYAETICKRVKNKVKPNANTYNIL---- 217
           Y EK+ + +  P++   N  L  LC+    + D  E     V     PN ++Y+IL    
Sbjct: 384 YFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGI 443

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++   EM+  G APD   +NT I   C A  V EA ++F  +  +    S+
Sbjct: 444 CRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR----SA 499

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           P A +Y  ++  L + +RMEE   L  HM   GC P
Sbjct: 500 PDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAP 535



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 24/184 (13%)

Query: 174 QPEINALNLLLDALCKCGLVD----YAETICKRVKNKVKPNANTYNIL------------ 217
           +P + + N+++  LC+ G +     Y E + +R   ++ P+  T+N              
Sbjct: 359 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR---RLCPDVYTFNAFLHGLCQRLDTVS 415

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
            G++  E M+  G +P+  +Y+  +D  C+A  +  A ++F  M ++G    +P    + 
Sbjct: 416 DGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGV---APDVVVFN 472

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L    R++E   +   +      PD  +Y  +L+G+    ++EEA      M  +
Sbjct: 473 TLIRWLCIAGRVDEALEVFRELERRSA-PDAWSYWSLLDGLSRCERMEEARLLSFHMKLQ 531

Query: 337 GYPP 340
           G  P
Sbjct: 532 GCAP 535


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + + I   ++P +   N+++D + K G ++ A  + + +K + + P+  TYN +      
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +   EEM  M   PD  TYN+ I+ FCK+  + +  + +  M+  G     P 
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGL---KPN 237

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y+ ++ A  + D M++       M   G +P+  TY  +++  C  G + +A++   
Sbjct: 238 VVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLAN 297

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM   G   ++VTY   +  LCD +   EA +L+G+M+  G  P++ +YN LI  + +  
Sbjct: 298 EMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAK 357

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             D A E  +E+  RG   D+  Y   I GL    K+E A  ++ E+   G+K
Sbjct: 358 NMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIK 410



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 126/271 (46%), Gaps = 16/271 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E   +  +P++   N L++  CK G +       + +K   +KPN  +Y+ L      
Sbjct: 191 FEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCK 250

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++   +M ++GH P+ FTY + +D  CK   +++A  L   M   G   +   
Sbjct: 251 EDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWN--- 307

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  +I  L   +RM+E   L G M+ +G +P++++Y  ++ G   A  ++ A + L 
Sbjct: 308 VVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLN 367

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+  +G  PD++ Y  F+  LC  +  + A  +   M E G   +   Y  L+  YF+ G
Sbjct: 368 ELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            P        EM +      V T+CV+IDGL
Sbjct: 428 NPTEGLHLLEEMQELDHEVTVVTFCVLIDGL 458



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 121/277 (43%), Gaps = 16/277 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+    N ++D   K G +D      + +K+   +P+  TYN L            G++ 
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEF 225

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM Q G  P+  +Y+T +D FCK  M+ +A   +  MR  G     P   TY  ++ A
Sbjct: 226 YREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHV---PNEFTYTSLVDA 282

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + + F L   M+  G   +V TY  +++G+C A +++EA K   +M   G  P+
Sbjct: 283 NCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPN 342

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + +YN  +      KN D AL L   +   G  P +  Y   I     L + + A    +
Sbjct: 343 LASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMN 402

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           EM + G   +   Y  ++D  F      E   LLEE+
Sbjct: 403 EMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEM 439



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 153/404 (37%), Gaps = 64/404 (15%)

Query: 114 EPLAYNLMID------ILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQY 165
           + + YN MID       L  T Y  ++ + +    D +  N+ +  F     L   L+ Y
Sbjct: 167 DTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFY 226

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETI---CKRVKNKVKPNANTYNIL----- 217
            E  +   +P + + + L+DA CK  ++  A       +RV +   PN  TY  L     
Sbjct: 227 REMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHV--PNEFTYTSLVDANC 284

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                    +   EM+++G   +  TY   ID  C A  + EA  LF  M T G     P
Sbjct: 285 KIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVI---P 341

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE------ 324
              +Y  +I   V+   M+    LL  +   G  PD+  Y   + G+C   K+E      
Sbjct: 342 NLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVM 401

Query: 325 -----------------------------EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
                                        E    LEEM    +   +VT+   +  LC N
Sbjct: 402 NEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKN 461

Query: 356 KNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           K   +A+  +GRM  + G  P+   Y  +I    +  +   A   + +M + G   D   
Sbjct: 462 KLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTA 521

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           Y  ++DG      + EA  L +++   G+KL    + S +   S
Sbjct: 522 YTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFS 565



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 7/213 (3%)

Query: 235 FTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           +  N+ +     ++   E  D+F E   T+   +  P    +  +   L+    +EE   
Sbjct: 27  YDANSILREIVLSKAELEECDVFDELWSTR--NVCVPGFGVFDALFSVLIDLGMLEEATQ 84

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
               M      P   +   +L      GK +   +F ++M   G  P + TYN  +   C
Sbjct: 85  CFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMID--C 142

Query: 354 DNKNGD-EALR-LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
             K GD EA R L+  M   G  P   TYN +I  Y ++G  D     + EM    C  D
Sbjct: 143 MWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPD 202

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           V TY  +I+      K+ +      E+   GLK
Sbjct: 203 VITYNSLINCFCKSGKLPKGLEFYREMKQSGLK 235



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 17/159 (10%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GMQTLEEMIQ 227
           +L+D LCK  LV  A     R+ N   ++PNA  Y  +                 E+M Q
Sbjct: 453 VLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQ 512

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD   Y + +D   K   + EA  L + M   G  +       Y  ++    Q ++
Sbjct: 513 EGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLD---LLAYTSLVWGFSQCNQ 569

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           +++  S L  MI    LPD      VL+     G ++EA
Sbjct: 570 LQKARSFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEA 608


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 27/324 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           ++E  +    P +   N +++  C  G    A+ + + + + K+ P+  T+++L      
Sbjct: 271 FSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK 330

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +   EM+  G  P+  TYN+ ID F K   +  A  +F  M TKG    SP 
Sbjct: 331 EGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGC---SPD 387

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T++I+I       R+++   LL  M   G + +  TY  ++ G C  G +  A   L+
Sbjct: 388 VITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQ 447

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-----------GCWPSVQTY 380
           EM + G  P++VT N  L  LC+N    +AL ++  M +               P VQTY
Sbjct: 448 EMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTY 507

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           N+LI      G+   A E + EM  RG   D  TY  +IDGL   S+++EA  + + + +
Sbjct: 508 NILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGS 567

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLG 464
           KG       F + +     +G +G
Sbjct: 568 KGFSPDVVTFTTLINGYCKVGRVG 591



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 151/363 (41%), Gaps = 18/363 (4%)

Query: 123 DILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNL 182
           D++ S   K +  R+ C++  +     K F     L   L  + +  K+   P +   + 
Sbjct: 93  DVVISLHRKMEMRRIPCNIYSFTILI-KCFCSCSKLPFALSTFGKITKLGFHPSLVTFST 151

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230
           LL  LC   + D             KPN   +  L             +  L+ M++ G 
Sbjct: 152 LLHGLC---VEDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGL 208

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            P+  TY T +D  CK      A +L   M         P    Y+ +I  L ++ R  +
Sbjct: 209 QPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRI--KPNVVIYSAIIDGLWKDGRQTD 266

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             +L   M   G  P++ TY  ++ G C +G+  EA + L EM  +   PD+VT++  + 
Sbjct: 267 AQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLIN 326

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            L       EA  LY  M+  G  P+  TYN +I  + +    D A   ++ M  +GC+ 
Sbjct: 327 ALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSP 386

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           DV T+ ++IDG     +V++   LL E+  +GL      + + +     +G+L A   L 
Sbjct: 387 DVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLL 446

Query: 471 DHM 473
             M
Sbjct: 447 QEM 449



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 154/362 (42%), Gaps = 39/362 (10%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ----------Y 165
             YN MI+   S+   ++  RL+  M +  ++ +   V   VL+  L +          Y
Sbjct: 284 FTYNCMINGFCSSGRWSEAQRLLREMFE--RKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------- 217
            E +     P     N ++D   K   +D AE +   +  K   P+  T++IL       
Sbjct: 342 NEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGA 401

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                GM+ L EM + G   +  TY T I  FC+   +  A DL + M + G     P  
Sbjct: 402 KRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVC---PNV 458

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLAG 321
            T   ++  L  N ++++   +   M  S              PDV TY  ++ G+   G
Sbjct: 459 VTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEG 518

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           K  EA +  EEM ++G  PD +TYN  +  LC     DEA +++  M   G  P V T+ 
Sbjct: 519 KFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFT 578

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI+ Y ++G      E + EM +RG   +  TY  +I G      +  A  + +E+++ 
Sbjct: 579 TLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISS 638

Query: 442 GL 443
           G+
Sbjct: 639 GV 640



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 21/279 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P++   ++L+D  C    VD    +   +  + +  N  TY  L             + 
Sbjct: 385 SPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALD 444

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
            L+EMI  G  P+  T NT +D  C    + +A ++F+ M+     + +        P  
Sbjct: 445 LLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDV 504

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +TY I+I  L+   +  E   L   M + G +PD  TY  V++G+C   +++EA +  + 
Sbjct: 505 QTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDS 564

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+KG+ PD+VT+   +   C      + L ++  M   G   +  TY  LI  + ++G 
Sbjct: 565 MGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGN 624

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            +GA + + EM   G   D  T   M+ GL+   +++ A
Sbjct: 625 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 126/288 (43%), Gaps = 25/288 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTLEEMIQMGHA- 231
           +P + A   L++ LC+ G V  A  +  R V++ ++PN  TY  +    ++ M +MG   
Sbjct: 174 KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTI----VDGMCKMGDTV 229

Query: 232 ----------------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                           P+   Y+  ID   K    T+A +LF  M+ KG    SP   TY
Sbjct: 230 SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGI---SPNLFTY 286

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             MI     + R  E   LL  M      PDV T+  ++  +   GK  EA +   EM  
Sbjct: 287 NCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLP 346

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P+ +TYN  +         D A R++  M   GC P V T+++LI  Y      D 
Sbjct: 347 RGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDD 406

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +  HEM +RG   +  TY  +I G      +  A  LL+E+++ G+
Sbjct: 407 GMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGV 454



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 75/207 (36%), Gaps = 56/207 (27%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK------------NKVKPNANTY 214
           E I     P +   N LLD LC  G +  A  + K ++            N V+P+  TY
Sbjct: 448 EMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTY 507

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           NIL              +  EEM   G  PD  TYN+ ID  CK   + EA  +F+ M +
Sbjct: 508 NILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGS 567

Query: 263 KGSTISSPT--------------------------------AKTYAIMIVALVQNDRMEE 290
           KG +    T                                A TY  +I    Q   +  
Sbjct: 568 KGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNING 627

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGM 317
              +   MI+SG  PD  T + +L G+
Sbjct: 628 ALDIFQEMISSGVYPDTITIRNMLTGL 654



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 89/198 (44%), Gaps = 8/198 (4%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +++   L G+M+ S  LP V  + ++L  +    + +       +M  +  P +I ++  
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +K  C       AL  +G++ ++G  PS+ T++ L+           A   +H++    
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI---- 172

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD----L 463
           C  +V  +  +++GL    +V EA  LL+ +V  GL+     + + +  +  +GD    L
Sbjct: 173 CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 232

Query: 464 GAIHKLSDHMRKFYNPVI 481
             + K+ +  R   N VI
Sbjct: 233 NLLRKMEEVSRIKPNVVI 250


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 140/310 (45%), Gaps = 25/310 (8%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K    P +   N +LD LCK GLV  A  +   +    V+PN  TYN L          
Sbjct: 207 VKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGG 266

Query: 218 ---GMQTLEEMI-QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
              G+    EM+ + G  PD  T++  +D FCK  ++  A  +  FM   G     P   
Sbjct: 267 WREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGV---EPNVV 323

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMI--NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           TY  +I       +MEE   + G M+    GCLP V T+  ++ G C   +V++A   L 
Sbjct: 324 TYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLS 383

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  KG  PD+ T+   +   C+ K    A  L+  M E G  P++QT  +++    +  
Sbjct: 384 EMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCW 443

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               A   +  M K G   D+  Y +M+DG+    K+ +A  LL  V+ KGLK+     D
Sbjct: 444 LDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKI-----D 498

Query: 452 SYLMQLSVIG 461
           SY   + + G
Sbjct: 499 SYTYNIMIKG 508



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 150/352 (42%), Gaps = 55/352 (15%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217
           K+  +P +  LN +++ LC  G V++A  + ++++N     NA TY  L           
Sbjct: 138 KIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTS 197

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF------------------- 257
             ++ L++M++    P+   YN  +D  CK  +V EA  L                    
Sbjct: 198 GALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLI 257

Query: 258 ------------------EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
                             E +  KG     P  +T++I++    +   +    S++G M+
Sbjct: 258 QGLCGEFGGWREGVGLFNEMVAEKGIV---PDVQTFSILVDGFCKEGLLLRAESVVGFMV 314

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--PDIVTYNCFLKVLCDNKN 357
             G  P+V TY  ++ G CL  ++EEA +    M  +G    P +VT+N  +   C  K 
Sbjct: 315 RIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKE 374

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D+A+ L   M+  G  P V T+  LI  + E+ +P  A E +  M + G   ++ T  V
Sbjct: 375 VDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAV 434

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           ++DGL  C    EA  L   ++  GL L    ++  L  +  +G L    KL
Sbjct: 435 VLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKL 486



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 109/266 (40%), Gaps = 42/266 (15%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           LG   L  M ++G  P   T NT ++  C    V  A  L E M   G   +   A+TY 
Sbjct: 128 LGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCN---ARTYG 184

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L +          L  M+     P+V  Y  +L+G+C  G V EA   L EMG  
Sbjct: 185 ALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVV 244

Query: 337 GYPPDIVTYNCFLKVLCDNKNG-DEALRLY------------------------------ 365
              P++VTYNC ++ LC    G  E + L+                              
Sbjct: 245 NVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLL 304

Query: 366 ------GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM--DKRGCAQDVDTYCV 417
                 G M+ +G  P+V TYN LI+ Y    + + A   +  M  +  GC   V T+  
Sbjct: 305 RAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNS 364

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGL 443
           +I G     +V++A  LL E+V KGL
Sbjct: 365 LIHGWCKVKEVDKAMSLLSEMVGKGL 390



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 53/260 (20%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL---------------- 217
           P++   ++L+D  CK GL+  AE++    V+  V+PN  TYN L                
Sbjct: 285 PDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRV 344

Query: 218 ---------------------------------GMQTLEEMIQMGHAPDNFTYNTAIDTF 244
                                             M  L EM+  G  PD FT+ + I  F
Sbjct: 345 FGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGF 404

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           C+ +    A +LF  M+  G     P  +T A+++  L++     E  +L   M+ SG  
Sbjct: 405 CEVKKPLAARELFFTMKEHGQV---PNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLD 461

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
            D+  Y  +L+GMC  GK+ +A K L  +  KG   D  TYN  +K LC     D+A  L
Sbjct: 462 LDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEEL 521

Query: 365 YGRMIEVGCWPSVQTYNMLI 384
             +M E GC P+  +YN+ +
Sbjct: 522 LRKMKENGCPPNKCSYNVFV 541



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 2/218 (0%)

Query: 205 NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           N ++       ++ +     M+ +   P    +N       K++    A  L + + + G
Sbjct: 45  NSIRTLETADAVVAVDFFHRMLTLTPFPCIQDFNLLFGLVAKSQHYATAISLIKILHSLG 104

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               S    T  I I  L    +    F++LG M   G  P + T   ++ G+C+ G V 
Sbjct: 105 D--GSADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVN 162

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A   +E+M N GY  +  TY   +  LC   +   AL    +M++    P+V  YN ++
Sbjct: 163 HALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAIL 222

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               + G    A    HEM       +V TY  +I GL
Sbjct: 223 DGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGL 260



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 25/182 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +    ++LD L KC L   A T+                         M++ G   D 
Sbjct: 427 PNLQTCAVVLDGLLKCWLDSEAVTL----------------------FRAMMKSGLDLDI 464

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             YN  +D  CK   + +A  L   +  KG  I S    TY IMI  L +   +++   L
Sbjct: 465 VIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDS---YTYNIMIKGLCREGLLDDAEEL 521

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M  +GC P+  +Y   ++G+     +  + K+L+ M +KG+P D  T    ++ L  
Sbjct: 522 LRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLIRFLSA 581

Query: 355 NK 356
           N+
Sbjct: 582 NE 583



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG--HMINSGCLPDVSTY 310
           A D F  M T       P  + + ++   + ++       SL+   H +  G   DV T 
Sbjct: 58  AVDFFHRMLT---LTPFPCIQDFNLLFGLVAKSQHYATAISLIKILHSLGDGS-ADVCTL 113

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
              +  +C   K    +  L  M   G  P +VT N  +  LC   + + AL L  +M  
Sbjct: 114 NIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMEN 173

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
           +G   + +TY  L++   ++G+  GA E   +M KR    +V  Y  ++DGL     V E
Sbjct: 174 LGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGE 233

Query: 431 ACFLLEE--VVN 440
           A  LL E  VVN
Sbjct: 234 ALGLLHEMGVVN 245


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 19/300 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETI---CKRVKNKVKPNANTYNIL------------G 218
           +P + A N +L AL +        ++      +  ++ PN  T+N+L             
Sbjct: 169 RPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADA 228

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           + TL +M   G +PD  TYNT ++  C+  M+ EA  L   M+ +G     PT  TY  +
Sbjct: 229 LSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIV---PTRATYNTL 285

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG- 337
           + A  +   +++   ++  M   G  PD+ TY  +  G+C AGKV+EA+K  +EM   G 
Sbjct: 286 VSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGI 345

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+VTYN  +      +   +AL L   M E G   S+ T+N+++      G+ + A 
Sbjct: 346 VSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEAL 405

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
                M + G   DV TY  +ID       V +A  L++E+V  GLK+     ++ L  L
Sbjct: 406 GRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNL 465



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 30/287 (10%)

Query: 162 LKQYTEKIKVKT----QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
           +KQ T+ ++  T    +P++   N+L   LC+ G VD A                     
Sbjct: 295 IKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEA--------------------- 333

Query: 218 GMQTLEEMIQMG-HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +  +EM Q+G  +PD  TYNT +D   K +  ++A +L E MR KG   S     T+ 
Sbjct: 334 -FKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSS---LVTHN 389

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           I++  L +  ++EE    L  M   G  PDV TY  +++  C AG V +A+  ++EM   
Sbjct: 390 IIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRS 449

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G   D  T N  L  LC  K  +EA  L     + G  P   +Y  +++ YF+  +P+ A
Sbjct: 450 GLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPA 509

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              W EM KR     + TY  +I GL    K+ EA   L E++  GL
Sbjct: 510 LCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGL 556



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 16/281 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--------GMQTLEEM 225
           P++   N L+DA CK G V  A  +    V++ +K +  T N L          +  EE+
Sbjct: 418 PDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEEL 477

Query: 226 I----QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +    Q G  PD  +Y T +  + K      A  L++ M  +  T   P+  TY  +I  
Sbjct: 478 LRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLT---PSISTYNTLIKG 534

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L    ++ E    L  ++  G +PD +TY  ++   C  G +E+A++F  +M    + PD
Sbjct: 535 LSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPD 594

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VT N  +  LC     ++A++L+   +E G    V TYN LI    +  + D A   + 
Sbjct: 595 VVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFA 654

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +M+ RG   DV TY V++  L +  +  EA  +L ++   G
Sbjct: 655 DMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG 695



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 99/249 (39%), Gaps = 36/249 (14%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P +   + A+ T+ + R+   AA L    R +G    S  A    +  +A   +   +  
Sbjct: 134 PTSALADAALSTYARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQAS 193

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
                 +I     P+  T+  ++   C  G + +A   L +M   G  PD VTYN  L  
Sbjct: 194 LDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNA 253

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-----------------EP- 393
            C      EA  L  RM + G  P+  TYN L+S Y  LG                 EP 
Sbjct: 254 HCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPD 313

Query: 394 -----------------DGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLL 435
                            D AF+   EM++ G  + DV TY  ++D  F C +  +A  LL
Sbjct: 314 LWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLL 373

Query: 436 EEVVNKGLK 444
           EE+  KG+K
Sbjct: 374 EEMREKGVK 382



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 112/273 (41%), Gaps = 51/273 (18%)

Query: 203 VKNKVKPNANTYNIL--GMQT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           +K K+ P+ +TYN L  G+ T          L E+++MG  PD+ TYN  I  +CK   +
Sbjct: 517 IKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDL 576

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A   F+F          P   T   ++  L    R+E+   L    +  G   DV TY
Sbjct: 577 EKA---FQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITY 633

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG----------DE 360
             +++ +C    V+ A +F  +M  +G  PD+ TYN  L  L +              +E
Sbjct: 634 NTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNE 693

Query: 361 ALRLYGRM-----------IEVGCWPSV---------------QTYNMLISMYFELGEPD 394
           + +LYGR            +E G  P V               ++YN  I      G+  
Sbjct: 694 SGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLK 753

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
            A     EM ++G + D  TY  +++GL    K
Sbjct: 754 EAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 52/227 (22%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+    N+++ A CK G ++ A +   K V+N  KP+  T N L             M+ 
Sbjct: 558 PDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKL 617

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E  ++ G   D  TYNT I   CK   V  A   F  M  +G     P   TY +++ A
Sbjct: 618 FESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGL---QPDVFTYNVLLSA 674

Query: 282 LVQNDRMEECFSLLGHMINSGCL---------------------PDV------------- 307
           L +  R  E   +L  +  SG L                     P+V             
Sbjct: 675 LSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGD 734

Query: 308 --STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
              +Y + ++ +C+ G+++EA   L+EM  KG   D  TY   ++ L
Sbjct: 735 DQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGL 781


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 13/278 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL--------GMQTLEEM 225
           P++     L+  LC+ G    A  + +  +    P +   YN L         +     +
Sbjct: 74  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 133

Query: 226 I-QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           I  M  APD +TY   I   C    V +A  L + M  +G     P   TY +++ A+ +
Sbjct: 134 IGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGC---QPNVVTYTVLLEAMCR 190

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           N   E+  ++L  M   GC P++ TY  ++ GMC  G+V++A + L  + + G+ PD V+
Sbjct: 191 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVS 250

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   LK LC +K  D+   L+  M+E  C P+  T++MLI  +   G  + A +   +M 
Sbjct: 251 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMT 310

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + GCA +     ++I+ +    +V++A  LL ++ + G
Sbjct: 311 EHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYG 348



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 139/278 (50%), Gaps = 19/278 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--GM----------QT 221
           P I   N++++ +C+ G VD A  +  R+ +   +P+  +Y  L  G+          + 
Sbjct: 211 PNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEEL 270

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM++    P+  T++  I  FC+  MV  A  + E M   G   ++       I+I +
Sbjct: 271 FAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCN---IVINS 327

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           + +  R+++ F LL  M + GC PD  +Y  VL+G+C A + ++A + L EM     PP+
Sbjct: 328 ICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPN 387

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N F+ +LC     ++A+ L  +M E GC   V TYN L++ +   G  D A E + 
Sbjct: 388 EVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFR 447

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            M    C  +  TY  ++ GL +  +++ A  L+ E++
Sbjct: 448 SMP---CKPNTITYTTLLTGLCNAERLDGAAELVAEML 482



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 33/330 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA---------------ETICKRVKNKVKP 209
           + E ++    P     ++L+   C+ G+V+ A                T+C  V N +  
Sbjct: 271 FAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICK 330

Query: 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTIS 268
                +    + L +M   G  PD  +Y T +   C+A    +A +L  E +R       
Sbjct: 331 QGRVDD--AFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNN----C 384

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   T+   I  L Q   +E+   L+  M   GC   V TY  ++ G C+ G ++ A +
Sbjct: 385 PPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALE 444

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               M  K   P+ +TY   L  LC+ +  D A  L   M+   C P+V T+N+L+S + 
Sbjct: 445 LFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFC 501

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEVVNKGLKLPY 447
           + G  + A E   +M + GC  ++ TY  ++DG+  DCS  E+A  LL  +V+KG+    
Sbjct: 502 QKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSS-EDALELLHGLVSKGVSPDV 560

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
             F       S+IG L    ++ + ++ F+
Sbjct: 561 ITFS------SIIGILSKEDRIEEAVQLFH 584



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 16/267 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM------ 219
           ++   QP +    +LL+A+C+    + A  +   ++ K   PN  TYN++  GM      
Sbjct: 170 LRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRV 229

Query: 220 ----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + L  +   G  PD  +Y T +   C ++   +  +LF  M  K      P   T+
Sbjct: 230 DDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCM---PNEVTF 286

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            ++I    +   +E    +L  M   GC  + +    V+  +C  G+V++A+K L +MG+
Sbjct: 287 DMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGS 346

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  PD ++Y   LK LC  +  D+A  L   M+   C P+  T+N  I +  + G  + 
Sbjct: 347 YGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQ 406

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGL 422
           A     +M + GC   V TY  +++G 
Sbjct: 407 AIMLIEQMSEHGCTVGVVTYNALVNGF 433



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 143/316 (45%), Gaps = 22/316 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANT 213
           V+  + +L+Q TE             N++++++CK G VD A  +   + +    P+  +
Sbjct: 299 VERAIQVLEQMTEH---GCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTIS 355

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y  +              + L EM++    P+  T+NT I   C+  ++ +A  L E M 
Sbjct: 356 YTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G T+      TY  ++        ++    L   M    C P+  TY  +L G+C A 
Sbjct: 416 EHGCTVG---VVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAE 469

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +++ A + + EM     PP++VT+N  +   C     +EA+ L  +M+E GC P++ TYN
Sbjct: 470 RLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYN 529

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+    +    + A E  H +  +G + DV T+  +I  L    ++EEA  L   V + 
Sbjct: 530 TLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDI 589

Query: 442 GLKLPYRKFDSYLMQL 457
           G++     ++  L+ L
Sbjct: 590 GMRPKAVVYNKILLGL 605



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 136/312 (43%), Gaps = 42/312 (13%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P+  +   +L  LC+    D A E + + V+N   PN  T+N               + 
Sbjct: 350 NPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIM 409

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            +E+M + G      TYN  ++ FC    +  A +LF  M  K +TI+            
Sbjct: 410 LIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAE 469

Query: 269 -----------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
                             P   T+ +++    Q   +EE   L+  M+  GC P++ TY 
Sbjct: 470 RLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYN 529

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +L+G+      E+A + L  + +KG  PD++T++  + +L      +EA++L+  + ++
Sbjct: 530 TLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDI 589

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P    YN ++    +  E D A + +  M   GC  +  TY ++I+GL     ++EA
Sbjct: 590 GMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649

Query: 432 CFLLEEVVNKGL 443
             LL  + ++G+
Sbjct: 650 QDLLSVLCSRGV 661



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+      L+  LC  G V D    +   ++   +PN  TY +L             M  
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAV 200

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   G  P+  TYN  I+  C+   V +A +L   + + G     P   +Y  ++  
Sbjct: 201 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGF---QPDTVSYTTLLKG 257

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L  + R ++   L   M+   C+P+  T+  ++   C  G VE A + LE+M   G   +
Sbjct: 258 LCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATN 317

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
               N  +  +C     D+A +L   M   GC P   +Y  ++         D A E  +
Sbjct: 318 TTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLN 377

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM +  C  +  T+   I  L     +E+A  L+E++   G  +    +++ +    V G
Sbjct: 378 EMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQG 437

Query: 462 DLGAIHKLSDHM 473
            + +  +L   M
Sbjct: 438 HIDSALELFRSM 449



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 3/167 (1%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L +  R  +   +L     SG   DV  Y  ++ G C  G ++ A + +   G+  
Sbjct: 82  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLI---GSMP 138

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD  TY   ++VLCD     +AL L   M+  GC P+V TY +L+         + A 
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               EM  +GC  ++ TY V+I+G+    +V++A  LL  + + G +
Sbjct: 199 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQ 245


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 142/330 (43%), Gaps = 51/330 (15%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYN--ILGM 219
           + YTE +     P I  LN +++A  K G +V+    + K  +  + P++ TY   ILG 
Sbjct: 200 RVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGY 259

Query: 220 ----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     +    M   G   +  +Y T I   C+A  + E   LF+ MR        
Sbjct: 260 CRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCY--- 316

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT +TY ++I AL  NDR  E   L   M    C P+V TY  +++ MC   K++E+ + 
Sbjct: 317 PTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRI 376

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG----------------------- 366
           L EM  KG  P +VTYN  ++  C+    + AL + G                       
Sbjct: 377 LNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSK 436

Query: 367 ------------RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                       +M+E    PS+ TYN LI +  + G  D A++    + + G   D  T
Sbjct: 437 RKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWT 496

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           Y V ID L    ++EEAC L   +  KG+K
Sbjct: 497 YSVFIDTLCKSKRMEEACDLFNSLKEKGIK 526



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 158/359 (44%), Gaps = 48/359 (13%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL-MILKQYTEKIKVKTQP 175
            Y +M+D +   +   +  R++  M++      K  VP  V    +++ Y E+ +++   
Sbjct: 356 TYTVMVDAMCKERKLDESRRILNEMME------KGLVPSVVTYNALIRGYCEEGRIEAAL 409

Query: 176 EINALNLLLDALCKCGLVDYAETIC----------------KRVKNKVKPNANTYNIL-- 217
           EI  L L+    C+     Y E IC                K +++K+ P+  TYN L  
Sbjct: 410 EI--LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIH 467

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       + L+ + + G  PD +TY+  IDT CK++ + EA DLF  ++ KG   
Sbjct: 468 VQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKG--- 524

Query: 268 SSPTAKTYAIMIVALVQND----RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
                K   +M  AL+       +++E  SLL  M +  CLP+ STY  ++ G+C  GKV
Sbjct: 525 ----IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKV 580

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +E    +E M   G  P + TY   ++ +    + D A R++ +M+  G  P V TY   
Sbjct: 581 QEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAF 640

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           I  Y   G    A      M + G   D  TY ++I          +A  +L+ +++ G
Sbjct: 641 IHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAG 699



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 130/296 (43%), Gaps = 19/296 (6%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-- 217
           IL +  EK  V   P +   N L+   C+ G ++ A E +     N  +PN  TYN L  
Sbjct: 376 ILNEMMEKGLV---PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELIC 432

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M  L +M++    P   TYN+ I   CKA     A  L + ++  G   
Sbjct: 433 GFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLV- 491

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY++ I  L ++ RMEE   L   +   G   +   Y  +++G C AGK++EA 
Sbjct: 492 --PDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAI 549

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             LE M ++   P+  TYN  +  +C      E L +   M ++G  P+V TY +LI   
Sbjct: 550 SLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEM 609

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              G+ D A   +++M   G   DV TY   I        V+EA  ++  ++  G+
Sbjct: 610 LREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGV 665



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 134/318 (42%), Gaps = 32/318 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E  +   +P ++   +++DA+CK   +D +  I                      L E
Sbjct: 342 FNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRI----------------------LNE 379

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M++ G  P   TYN  I  +C+   +  A ++   M +       P  +TY  +I    +
Sbjct: 380 MMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNC---RPNERTYNELICGFSK 436

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              + +  +LL  M+ S   P + TY  ++   C AG  + AYK L+ +   G  PD  T
Sbjct: 437 RKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWT 496

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+ F+  LC +K  +EA  L+  + E G   +   Y  LI  + + G+ D A      M 
Sbjct: 497 YSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMH 556

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
              C  +  TY  +I G+    KV+E   ++E +   G+K     +   + ++   GD  
Sbjct: 557 SEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDF- 615

Query: 465 AIHKLSDHMRKFYNPVIA 482
                 DH  + +N +++
Sbjct: 616 ------DHANRVFNQMVS 627


>gi|255661010|gb|ACU25674.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 376

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 3/223 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L  MIQ G  P+   YN  I+    A   +++ D     R  G    SPT  TY+I+
Sbjct: 149 VSVLNGMIQSGCKPNTHVYNALINGLIGA---SKSEDAIRVFREMGFPHCSPTIVTYSIL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +++R  E + L+  M+  G  P V TY  +++G+CL  KVE A +   ++  KG+
Sbjct: 206 INGLCKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ T+N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNCSPNLVTHNTLMEGFYKDGDIRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            W  + K     D+ +Y + + GL  C+++ +A   L + V K
Sbjct: 326 MWARILKNELQPDIISYNITLKGLCSCNRISDAILFLHDAVRK 368



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 4/213 (1%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +PD   YN  ++ F +A  + +  +L+E M  +GS     +  ++ IM+  L  N R++E
Sbjct: 22  SPDAVVYNAMLNGFYRAGRIKDCFELWEMMGKEGSR----SVASFNIMMRGLFDNGRVDE 77

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             S+   M   G + D  TY  ++ G C  G + ++   LE    KG   D + Y   + 
Sbjct: 78  VNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLHLLEIXERKGRXXDALAYXPMIN 137

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            LC     ++A+ +   MI+ GC P+   YN LI+      + + A   + EM    C+ 
Sbjct: 138 GLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGFPHCSP 197

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + TY ++I+GL    +  EA  L++E++ KGL
Sbjct: 198 TIVTYSILINGLCKSERFSEAYDLVKEMLEKGL 230



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 153/366 (41%), Gaps = 53/366 (14%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           + Y + +  K  P+    N +L+   + G +     + + +  +   +  ++NI+ M+ L
Sbjct: 11  RVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGKEGSRSVASFNIM-MRGL 69

Query: 223 -------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                        E M + G+  D+ TY   +  FCK   + ++  L E    KG     
Sbjct: 70  FDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLHLLEIXERKGRXXD- 128

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD----------------------- 306
             A  Y  MI  L +  ++E+  S+L  MI SGC P+                       
Sbjct: 129 --ALAYXPMINGLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRV 186

Query: 307 ------------VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
                       + TY  ++ G+C + +  EAY  ++EM  KG  P ++TY+  +K LC 
Sbjct: 187 FREMGFPHCSPTIVTYSILINGLCKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCL 246

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               + AL+L+ ++ + G  P VQ +N+LI     + +   A   + +M++  C+ ++ T
Sbjct: 247 GHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNCSPNLVT 306

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHM 473
           +  +++G +    +  A  +   ++   L+     ++  L  L     +  AI  L D +
Sbjct: 307 HNTLMEGFYKDGDIRNALVMWARILKNELQPDIISYNITLKGLCSCNRISDAILFLHDAV 366

Query: 474 RKFYNP 479
           RK   P
Sbjct: 367 RKKIFP 372



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  +++    P    YN +++ ++  G     FE W  M K G ++ V
Sbjct: 1   CESGDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGKEG-SRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLE 436
            ++ +M+ GLFD  +V+E   + E
Sbjct: 60  ASFNIMMRGLFDNGRVDEVNSIWE 83



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 98/252 (38%), Gaps = 24/252 (9%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDY-MKRNNKVFVPVDVLLMILKQYTEKIKV- 171
           + LAY  MI+ L       K   ++  M+    K N  V+  +   L+   +  + I+V 
Sbjct: 128 DALAYXPMINGLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRVF 187

Query: 172 ------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------- 217
                    P I   ++L++ LCK      A  + K +  K + P+  TY++L       
Sbjct: 188 REMGFPHCSPTIVTYSILINGLCKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLG 247

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 +Q   ++ + G  PD   +N  I   C       A  L+  M        SP  
Sbjct: 248 HKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNC---SPNL 304

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T+  ++    ++  +     +   ++ +   PD+ +Y   L+G+C   ++ +A  FL +
Sbjct: 305 VTHNTLMEGFYKDGDIRNALVMWARILKNELQPDIISYNITLKGLCSCNRISDAILFLHD 364

Query: 333 MGNKGYPPDIVT 344
              K   P  +T
Sbjct: 365 AVRKKIFPTKIT 376



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C +G ++ A +  +++ +    PD V YN  L          +   L+  M + G   SV
Sbjct: 1   CESGDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGKEGS-RSV 59

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            ++N+++   F+ G  D     W  M K G  +D  TY +++ G      + ++  LLE 
Sbjct: 60  ASFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLHLLEI 119

Query: 438 VVNKG 442
              KG
Sbjct: 120 XERKG 124


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 140/300 (46%), Gaps = 34/300 (11%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAET 198
           +++D++ +N K+   V ++        EKI      P I   N LL+ LCK G ++ A  
Sbjct: 39  TIVDWLAKNKKIQEAVALM--------EKITANGCTPTIATYNALLNGLCKMGRLEEA-- 88

Query: 199 ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
                               +  L +++  G  PD  TY + ID   K +   EA  LF+
Sbjct: 89  --------------------IDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFK 128

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M ++G  + +     Y  +I  L+Q  ++ +  S+   M + GC+PDV T   +++G+C
Sbjct: 129 EMASRGLALDTVC---YTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC 185

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AG++  A +  + M  +G  P+ V Y+  +  LC  +  D AL +  +M +  C P   
Sbjct: 186 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 245

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TYN+LI    + G+   A   + EM + GC  DV TY ++I G       + AC + +++
Sbjct: 246 TYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 305



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 26/273 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++  L+ ++D LCK G +  A  I K ++ +                      G AP+ 
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR----------------------GLAPNE 209

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  I   CKAR +  A ++   M+       +P   TY I+I  L ++  +    + 
Sbjct: 210 VVYSALIHGLCKARKMDCALEMLAQMK---KAFCTPDTITYNILIDGLCKSGDVAAARAF 266

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+ +GC PDV TY  ++ G C AG  + A    ++M +    P++VTY   +  LC 
Sbjct: 267 FDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCK 326

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
            +   +A   Y  M E GC P    Y+ L+    + G+ +G    + EM++ G A    T
Sbjct: 327 RRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS-QT 385

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
              +I  L   ++V+EA  L   +  +G+  PY
Sbjct: 386 RTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPY 418



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 3/208 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           T++  I+   KA M+ +A  L +   T G TI      TY  ++  L +N +++E  +L+
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTID---IHTYTTIVDWLAKNKKIQEAVALM 57

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             +  +GC P ++TY  +L G+C  G++EEA   L ++ + G  PD+VTY   +  L   
Sbjct: 58  EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKK 117

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           K   EA +L+  M   G       Y  LI    + G+   A   +  M  +GC  DV T 
Sbjct: 118 KRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTL 177

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             MIDGL    ++  A  + + +  +GL
Sbjct: 178 STMIDGLCKAGRIGAAVRIFKSMEARGL 205



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T+  ++ G+  AG + +A+   +E    G   DI TY   +  L  NK   EA+ L  ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
              GC P++ TYN L++   ++G  + A +   ++   GC  DV TY  +IDGL    + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 429 EEACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHK 468
            EA  L +E+ ++GL L    Y      L+Q   I    +++K
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYK 163



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E ++   +P++   N+L+   CK G  D A  +   + + +  PN  TY  L      
Sbjct: 267 FDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCK 326

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                      + M + G  PD+F Y++ +D  CK+  +     LF+ M   G   S   
Sbjct: 327 RRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS--- 383

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            +T   +I  L + +R++E  SL   +   G +P    Y  ++  +  +GKV E     +
Sbjct: 384 -QTRTRLIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQ 441

Query: 332 EM 333
           EM
Sbjct: 442 EM 443


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 165/385 (42%), Gaps = 43/385 (11%)

Query: 57  AIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPL 116
           +II +S  ++   + L  L   L    VV +L      E +  RFF W      + H+  
Sbjct: 55  SIILSSPTWERSSE-LSHLIPKLKPHHVVNLLDTHNNTESV-LRFFHWVSRTHFFKHDMS 112

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD-VLLMILKQYTEKIKVK--- 172
            +                     SML+ + R+ ++FVP D V ++++K    + +VK   
Sbjct: 113 CF--------------------VSMLNRLVRD-RLFVPADNVRILMIKSCRNEGEVKRVI 151

Query: 173 -TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
               EIN               D+  T+       ++      + LG     EM+  G  
Sbjct: 152 QVLSEINTT------------YDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIR 199

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ FT+N  I   C    V EA  +   +   G+    P   TY  +I+   +N  ++  
Sbjct: 200 PNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGAC---PDTFTYTSLIIGHCKNGNLDLA 256

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           F +   M+  GC P+  TY  ++ G+C  G++EEA   LEEM +KG  P +  Y   +  
Sbjct: 257 FEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVS 316

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LCD     EA++L G+M + GC P+VQTY  LIS     G+ + A   +H+M   G    
Sbjct: 317 LCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPT 376

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLE 436
             TY  +I+ L+   + E A  + E
Sbjct: 377 AVTYSALINQLYVEGRFETALTIFE 401



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 145/337 (43%), Gaps = 23/337 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           Y E +    +P +   N ++  LC  G V  AE I   + +    P+  TY  L      
Sbjct: 190 YIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCK 249

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +  + M++ G  P++ TY+  I+  C    + EA D+ E M  KG     PT
Sbjct: 250 NGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGI---EPT 306

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y I IV+L    R  E   LLG M   GC P+V TY  ++ G+   GK E A     
Sbjct: 307 VHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYH 366

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M   G  P  VTY+  +  L      + AL ++  M+     P+ +TYN++I  +  +G
Sbjct: 367 KMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIG 426

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               A   + +M K G + +V TY ++I   F    +  A  LLE +   GLKL    + 
Sbjct: 427 YIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYA 486

Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488
           + +   S  G L       +H    +N ++   ++ N
Sbjct: 487 NLISGFSRGGKL-------EHAFSLFNEMVEHGISPN 516



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 15/241 (6%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  TYN++                 ++M++ G +P+  TYN  I  + K   +  A  L
Sbjct: 410 PNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRL 469

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            E M+  G  + +    TYA +I    +  ++E  FSL   M+  G  P+V TY  ++ G
Sbjct: 470 LEMMKGNGLKLDT---WTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIING 526

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
                KV++A     +M   G  P   TYN  +          EA    G+M++ G  P+
Sbjct: 527 YLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPN 586

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TY   I    + G    AF+ +HEM KR    ++ TY  +IDGL    + E+A  LL+
Sbjct: 587 VITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD 646

Query: 437 E 437
           +
Sbjct: 647 D 647



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 133/313 (42%), Gaps = 45/313 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+      L+   CK G +D A E   + VK+   PN+ TY+ L             M  
Sbjct: 235 PDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDM 294

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------STISS--- 269
           LEEMI  G  P    Y   I + C A    EA  L   M+ +G         + IS    
Sbjct: 295 LEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSR 354

Query: 270 --------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                               PTA TY+ +I  L    R E   ++   M++   LP+  T
Sbjct: 355 DGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTET 414

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +++G C  G +++A    ++M   G  P+++TYN  + +       + A+RL   M 
Sbjct: 415 YNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMK 474

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G      TY  LIS +   G+ + AF  ++EM + G + +V TY  +I+G    +KV+
Sbjct: 475 GNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVD 534

Query: 430 EACFLLEEVVNKG 442
           +A  L  ++V  G
Sbjct: 535 DALALFWKMVESG 547



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 178/453 (39%), Gaps = 51/453 (11%)

Query: 45  SDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSV---------------VGVLQ 89
           +D +   A  Y A+I+        E AL      L+ DS+               +G +Q
Sbjct: 370 ADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQ 429

Query: 90  RFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM------LD 143
           +        F   + AG   N     + YN++I I     Y     RL+  M      LD
Sbjct: 430 K----ATAIFDQMLKAGPSPNV----ITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLD 481

Query: 144 YMKRNNKV--FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-C 200
                N +  F     L      + E ++    P +   N +++       VD A  +  
Sbjct: 482 TWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFW 541

Query: 201 KRVKNKVKPNANTYNIL--GMQTLE----------EMIQMGHAPDNFTYNTAIDTFCKAR 248
           K V++   P++ TYN++  G               +M++ G  P+  TY + ID  CK  
Sbjct: 542 KMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNG 601

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
             + A  +F  M+ +      P   TY+ +I  L Q  + E+   LL    + GC P+V 
Sbjct: 602 RTSLAFKIFHEMKKRDYF---PNLCTYSSLIDGLCQEGQAEDAERLL----DDGCEPNVD 654

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G+C  G+  EA + +E M  KG  P    Y   L   C N   + AL+++  M
Sbjct: 655 TYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSM 714

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  G  P +  Y  LI    +      A   +  M K+    D   + V++DGL    + 
Sbjct: 715 VTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGET 774

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           + +  LL  + ++   L ++       +LS +G
Sbjct: 775 DLSLELLHVMESRNCTLNFQTRVMLARELSALG 807


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 178/403 (44%), Gaps = 35/403 (8%)

Query: 98  AFRFFMWAGHQDNYAHE-PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           +  FF WA  +D+Y  + P  YN MID+      K +QF L   ++D MK  N V + ++
Sbjct: 133 SLAFFNWATSRDDYDQKSPHPYNEMIDLAG----KVRQFDLAWHLIDLMKSRN-VEISIE 187

Query: 157 VLLMILKQY------TEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRV 203
              +++++Y      +E +    +       P+  A ++++  L +      A++    +
Sbjct: 188 TFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL 247

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
           K++ +P+   Y  L              +  ++M   G  P+ +TY+  ID  C+   ++
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQIS 307

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
            A D+F  M   G    +P A T+  ++   V+  R E+   +   M   GC PD  TY 
Sbjct: 308 RAHDVFADMLDSGC---APNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYN 364

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++E  C    +E A K L  M  K    +  T+N   + +   ++ + A R+Y +M+E 
Sbjct: 365 FLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEA 424

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            C P+  TYN+L+ M+      D   +   +MD +    +V+TY +++           A
Sbjct: 425 KCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNA 484

Query: 432 CFLLEEVVNKGLKLPYRK-FDSYLMQLSVIGDLGAIHKLSDHM 473
             L +E+V +    P    ++  L QL   G L    +L + M
Sbjct: 485 YKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 109/266 (40%), Gaps = 29/266 (10%)

Query: 94  EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY------MKR 147
           E +  F+    AG + N       Y+++ID L      ++   +   MLD       +  
Sbjct: 273 EAEKVFKDMKLAGIEPNV----YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328

Query: 148 NN--KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKC-GLVDYAETICKRVK 204
           NN  +V V       +L+ Y +  K+  +P+    N L++  C+   L +  + +   +K
Sbjct: 329 NNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIK 388

Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
            K + NA+T+N +              +   +M++    P+  TYN  +  F  ++    
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDM 448

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYK 311
              + + M  K      P   TY +++            + L   M+   CL P +S Y+
Sbjct: 449 VLKMKKDMDDKEV---EPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYE 505

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKG 337
            VL  +  AG++++  + +E+M  KG
Sbjct: 506 MVLAQLRRAGQLKKHEELVEKMIQKG 531


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 178/413 (43%), Gaps = 40/413 (9%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           +I+       ++ +L  L   L+  +V+  LQ  +   K A  FF W      + H   +
Sbjct: 165 LINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAK-ALHFFRWV-EAKGFTHNEQS 222

Query: 118 YNLMIDILSSTKY--KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175
           Y LMI+IL  ++    A+ F            + KVF  +              ++   P
Sbjct: 223 YFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIKVFKTMK-------------EIGVSP 269

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GMQT 221
            +   N LL  + K G    A+ +   + +   V P+  T+NIL            G   
Sbjct: 270 SVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWF 329

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM +    PD  TYNT +D  C+A  V  A ++ + M  K   +S P   TY  +I  
Sbjct: 330 FKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLS-PNVVTYTTLIRG 388

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM-GNKGYPP 340
                 M E  SLL  M++ G  P+  TY  +++G+C A K+++  + LE M G+ G+ P
Sbjct: 389 YCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIP 448

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D  T N  +K  C     +EA  ++ +M E+   P   TY++L+    + G+   A E +
Sbjct: 449 DTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFF 508

Query: 401 HEMDKR-------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            E+ ++       GC   V  Y  M + L    K ++A  +  +++ +G + P
Sbjct: 509 DELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP 561



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 53/366 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+   LN L+ A C  G ++ A ++ +++   +V+P++ TY++L              + 
Sbjct: 448 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 507

Query: 222 LEEMIQ-------MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
            +E+ +       +G  P    YN   +  C      +A  +F  +  +G T   P+ KT
Sbjct: 508 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKT 566

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
              +I+   +    E  F LL  M+    +PD  TY  +++G+   G    A+K LE+M 
Sbjct: 567 ---LILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 623

Query: 335 NKGYPPDIVTYNCFLKVLCDN-------------------KNG--DEALRLYGRMIEVGC 373
              + P    ++  L  L +                    K+G  D+A    G + E G 
Sbjct: 624 KSSHLPTTAIFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGY 683

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
              ++     +    +L E          ++KR    D+D    +I GL    KV EA  
Sbjct: 684 LVKMEELVSFLCQSRKLLEAQKML--LFSLEKRQSV-DIDMCSTVISGLCKAHKVSEAFA 740

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVR 493
           L  E+V KG++      +   + L   G L     +S  M     P + ++   ++   +
Sbjct: 741 LYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKM-----PEVPKQWQSDRTGPK 795

Query: 494 ISLREK 499
           +S+R K
Sbjct: 796 LSVRRK 801


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQ 220
           + ++ A + ++  LC  G  D  A+ + + +   + PN  T++ L              +
Sbjct: 276 KADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKE 335

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+  G APD  TY++ ID FCK   + EA  + + M +KG     P   TY+I+I 
Sbjct: 336 LYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGC---EPNIVTYSILIN 392

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +  +  R++    L   + + G + D  TY  +++G C +GK+  A +  +EM ++G PP
Sbjct: 393 SYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPP 452

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            +VTY   L  LCDN    +AL ++ +M +      +  YN++I       + D A+  +
Sbjct: 453 SVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLF 512

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +  +G   DV TY VMI GL     + EA  L  ++   G
Sbjct: 513 CSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDG 554



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 134/291 (46%), Gaps = 20/291 (6%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKP 209
           VFV    LL   + Y E +     P+    + L+D  CK   +  A  +   + +K  +P
Sbjct: 323 VFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEP 382

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           N  TY+IL            GM+   E+   G   D  TYNT +  FC++  +  A +LF
Sbjct: 383 NIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELF 442

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + M ++G     P+  TY I++  L  N  +++   +   M  S  +  +  Y  ++ GM
Sbjct: 443 QEMVSRGV---PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGM 499

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C A KV++A+     +  KG  PD++TYN  +  LC   +  EA  L+ +M E GC PS 
Sbjct: 500 CNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSD 559

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI----DGLFD 424
            TYN+LI  +        + E   EM  RG A D  T  +++    DG  D
Sbjct: 560 CTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVMLSDGRLD 610



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 138/277 (49%), Gaps = 16/277 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++++D+LCK G +D A ++   ++ K +K +   Y+ +            G + L EMI 
Sbjct: 248 SIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIG 307

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P+  T++  ID F K   + EA +L+  M  +G    +P   TY+ +I    + +R
Sbjct: 308 RNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGI---APDTITYSSLIDGFCKENR 364

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   +L  M++ GC P++ TY  ++   C A +V+   +   E+ +KG   D VTYN 
Sbjct: 365 LGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNT 424

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            ++  C +   + A  L+  M+  G  PSV TY +L+    + GE   A E + +M K  
Sbjct: 425 LVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSR 484

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               +  Y ++I G+ + SKV++A  L   +  KG+K
Sbjct: 485 MILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVK 521



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 135/315 (42%), Gaps = 45/315 (14%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN------------ 215
           +++K +P +  +N L++ LC  G V  A  +  R VK   + N  TY             
Sbjct: 166 VEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNT 225

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------ST 266
            L +    +M +         Y+  ID+ CK   + +A  LF  M  KG         S 
Sbjct: 226 ALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSI 285

Query: 267 ISS-----------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           I                         P   T++ +I   V+  ++ E   L   M+  G 
Sbjct: 286 IGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGI 345

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PD  TY  +++G C   ++ EA + L+ M +KG  P+IVTY+  +   C  K  D  +R
Sbjct: 346 APDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMR 405

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+  +   G      TYN L+  + + G+ + A E + EM  RG    V TY +++DGL 
Sbjct: 406 LFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLC 465

Query: 424 DCSKVEEACFLLEEV 438
           D  ++++A  + E++
Sbjct: 466 DNGELQKALEIFEKM 480



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 140/329 (42%), Gaps = 16/329 (4%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNI 216
           LL         +K   +P     + L++  C  G V  A  +  R V+ K +PN  T N 
Sbjct: 120 LLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNT 179

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L             +  ++ M++ G   +  TY   ++  CK+     A DLF  M  + 
Sbjct: 180 LINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEER- 238

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
            +I +   + Y+I+I +L ++  +++  SL   M   G   DV  Y  ++ G+C  G+ +
Sbjct: 239 -SIKASVVQ-YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWD 296

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +  K L EM  +   P++VT++  + V        EA  LY  M+  G  P   TY+ LI
Sbjct: 297 DGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLI 356

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + +      A +    M  +GC  ++ TY ++I+      +V+    L  E+ +KGL 
Sbjct: 357 DGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLV 416

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +++ +      G L    +L   M
Sbjct: 417 ADTVTYNTLVQGFCQSGKLNVAKELFQEM 445



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T  IMI    +  ++   FS++G  +  G  P+  T+  ++ G CL G+V EA   ++ M
Sbjct: 106 TMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRM 165

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
               Y P++VT N  +  LC      EAL L  RM++ GC  +  TY  +++   + G  
Sbjct: 166 VEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNT 225

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A + + +M++R     V  Y ++ID L     +++A  L  E+  KG+K     + S 
Sbjct: 226 ALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSI 285

Query: 454 LMQL 457
           +  L
Sbjct: 286 IGGL 289



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 9/169 (5%)

Query: 250 VTEAADLFEFMRTKGSTISS---PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           V EA DLFE      S I S   P+   ++ +  A+ +    +        M  +G   +
Sbjct: 50  VNEAIDLFE------SMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHN 103

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           + T   ++   C   K+  A+  +      G+ P+ +T++  +   C      EA+ L  
Sbjct: 104 MYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVD 163

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           RM+E+   P+V T N LI+     G    A      M K GC  +  TY
Sbjct: 164 RMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITY 212



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 66/156 (42%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++ E   L   MI S  LP +  + ++   +    + +    F +EM   G   ++ T N
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C  +    A  + GR ++ G  P+  T++ LI+ +   G    A      M + 
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               +V T   +I+GL    +V EA  L++ +V  G
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYG 204


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 123/269 (45%), Gaps = 25/269 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P +   N+++DA+C+ G VD A  +                      L  +   G  P+
Sbjct: 13  EPNVVTYNVIIDAMCREGDVDQAREL----------------------LNSLPSRGCKPN 50

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              YNT +   C      +A +L + M  +      P   T  +++  L +   +++   
Sbjct: 51  TVNYNTVLKGLCSIERWVDAEELLDEMVRENC---PPNEATVNVIVNTLSRKGLLQKVTR 107

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
            L  M   GC  +V TY  V+ GMC  G V+ A + L  M + G  PDIVTYN  LK LC
Sbjct: 108 YLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLC 167

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                ++A  L  +M +  C P   T+N +IS   + G    AFE + +M ++GC  +  
Sbjct: 168 SADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNST 227

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           TY  +I GL    K+E+A  LL E+ +KG
Sbjct: 228 TYSTIIGGLAKAGKMEQALELLNEMASKG 256



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 24/270 (8%)

Query: 158 LLMILKQYTEKI-KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
           LL  + +Y EK+ K      +   N ++  +C+ G VD A  +   +++   KP+  TYN
Sbjct: 101 LLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYN 160

Query: 216 IL--GMQTLEE-------MIQMGHA---PDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L  G+ + ++       MI+M      PDN T+NT I   C+  ++ +A ++F+ M  K
Sbjct: 161 TLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEK 220

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G    +P + TY+ +I  L +  +ME+   LL  M + G   D   Y+ + E +    K+
Sbjct: 221 GC---NPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNTD-KMYQLLTESLNKEDKI 276

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           EE  + + ++ + G  P  V +N  L VLC N   D A+ +   M+  GC P   TY +L
Sbjct: 277 EEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIIL 336

Query: 384 I-SMYFELGEPDGAFETWHEMDKRGCAQDV 412
           I  + +E     G  +   E+  R C++DV
Sbjct: 337 IEGLSYE-----GYLQEARELVSRLCSRDV 361



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 17/269 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILGM---- 219
           E ++    P    +N++++ L + GL+       +++ K+    N  TYN  I GM    
Sbjct: 76  EMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQG 135

Query: 220 ------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L  M   G  PD  TYNT +   C A    +A +L   M         P   
Sbjct: 136 HVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCL---PDNV 192

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T+  +I  L Q   + + F +   M   GC P+ +TY  ++ G+  AGK+E+A + L EM
Sbjct: 193 TFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEM 252

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +KGY  D + Y    + L      +E +++  ++ + G  P    +N ++ +    G+ 
Sbjct: 253 ASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKT 311

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           D A +   +M   GC  D  TY ++I+GL
Sbjct: 312 DYAIDVLADMVSYGCMPDELTYIILIEGL 340



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%)

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             L+  M   GC P+V TY  +++ MC  G V++A + L  + ++G  P+ V YN  LK 
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC  +   +A  L   M+   C P+  T N++++     G          +M K GC  +
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTAN 120

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           V TY  +I G+ +   V+ A  LL  + + G K     +++ L  L
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGL 166


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 3/262 (1%)

Query: 212 NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           N  NI     + E+++    PD F YN  I  FCK   +  A  +   M+ +G     P 
Sbjct: 125 NFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFL---PD 181

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY IMI +L    ++    ++L  ++   C+P V TY  ++E   + G + EA K LE
Sbjct: 182 IVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLE 241

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G  PD+ TYN  ++ +C     + A  L   +   GC P V +YN+L+  +   G
Sbjct: 242 EMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQG 301

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + D   +   EM  RGC  +  TY ++I  L    +++EA  +L+ ++ K L      +D
Sbjct: 302 KWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYD 361

Query: 452 SYLMQLSVIGDLGAIHKLSDHM 473
             +  L   G L     + D+M
Sbjct: 362 PLISALCKEGRLDLAIGIMDYM 383



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 35/374 (9%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI------------LK 163
           + YN+MI  L + +    +  L  ++LD +  +N +   +   ++I            +K
Sbjct: 183 VTYNIMIGSLCNRR----KLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMK 238

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----- 217
              E +     P++   N ++  +CK G+V+ A E I        +P+  +YNIL     
Sbjct: 239 LLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFL 298

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                  G + + EM   G  P+  TY+  I + C+   + EA  + + M  K  T   P
Sbjct: 299 NQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELT---P 355

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              +Y  +I AL +  R++    ++ +MI++GCLPD+  Y  +L  +C  G   +A +  
Sbjct: 356 DTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 415

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            ++   G PP++ +YN  +  L    +   AL +   MI  G  P   TYN LIS     
Sbjct: 416 NKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRD 475

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G  + A     +M++ G    V +Y +++ GL    ++++A  +  E++ KG + P    
Sbjct: 476 GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCR-PNET- 533

Query: 451 DSYLMQLSVIGDLG 464
            +Y++ +  IG  G
Sbjct: 534 -TYILLIEGIGFAG 546



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 25/313 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E ++  T+P++ A N ++   CK   ++ A  +  R+K +                    
Sbjct: 137 EILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKAR-------------------- 176

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  PD  TYN  I + C  R +  A  + + +         PT  TY I+I A +   
Sbjct: 177 --GFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCM---PTVITYTILIEATIVEG 231

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            + E   LL  M+  G LPD+ TY  ++ GMC  G VE A + +  + +KG  PD+++YN
Sbjct: 232 GINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYN 291

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L+   +    DE  +L   M   GC P+  TY++LIS     G  D A      M ++
Sbjct: 292 ILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK 351

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
               D  +Y  +I  L    +++ A  +++ +++ G       +++ L  L   G+    
Sbjct: 352 ELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQA 411

Query: 467 HKLSDHMRKFYNP 479
            ++ + +R    P
Sbjct: 412 LEIFNKLRGMGCP 424



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 20/190 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+I   N +L ALCK G  + A  I  +++     PN ++YN +             +  
Sbjct: 390 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 449

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +  MI  G  PD  TYN+ I   C+  +V EA  L + M   G     PT  +Y I+++ 
Sbjct: 450 VPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF---RPTVISYNIVLLG 506

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+++   +   MI  GC P+ +TY  ++EG+  AG   EA     E+ N  +  D
Sbjct: 507 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAM----ELANSLFSRD 562

Query: 342 IVTYNCFLKV 351
           +++ + F ++
Sbjct: 563 VISQDSFKRL 572



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           ++L   C AGK  E+  FLE + NKGY PD++     +K   + KN ++A R+   ++E 
Sbjct: 83  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILES 141

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              P V  YN +IS + ++ + + A +  + M  RG   D+ TY +MI  L +  K+  A
Sbjct: 142 HTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 201

Query: 432 CFLLEEVV 439
             +L++++
Sbjct: 202 LTVLDQLL 209


>gi|357129487|ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Brachypodium distachyon]
          Length = 837

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 137/325 (42%), Gaps = 51/325 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           I    +P  ++ N+++  LCK   +D A  + K +     K     +N L          
Sbjct: 432 ISEDVKPNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRL 491

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G +    M  +G  P  FTYN+     C+ +    A DL   MRT G     P  K  
Sbjct: 492 DEGYKMFNLMKNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGH---RPWIKNC 548

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----------------- 318
             M+  L  + R+ E    L  M+  G LPD+ TY   + G+C                 
Sbjct: 549 TEMVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISS 608

Query: 319 ------------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                             ++GK+ EA + +EEM  KG  P IVTYN  + V C + N ++
Sbjct: 609 KYYLPDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEK 668

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A+    +MI+    P+V TY  LI      G PD A   WH+M  +GCA +   Y   ++
Sbjct: 669 AIACLNKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVN 728

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKL 445
           GL   ++V+ A    EE++ KG +L
Sbjct: 729 GLCKRARVDTALTYYEEMMTKGFEL 753



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 150/389 (38%), Gaps = 52/389 (13%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           L  L   LT  +V  VL R     + A  FF WA  Q  + H    +N M  +L   +++
Sbjct: 62  LRRLSAHLTAPAVESVLVRLP-SWRHALDFFQWADEQPGFRHSCYTFNAMASLLP--RHQ 118

Query: 132 AKQFRLV--------CSM----LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINA 179
           A     +        C M    L ++ R        D  L++      +  +   P    
Sbjct: 119 AAHLDRLAADALAACCPMTPGALGFLLRCLGAAGLPDAALLVFD--GARTCLSCTPNSYT 176

Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI-QMG-HAPDNFTY 237
            N LLD L K G  D AE                        L+EM+ + G  + D +T 
Sbjct: 177 FNCLLDTLAKAGRADDAEA----------------------RLQEMVVRCGDESVDKYTL 214

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
            + +  +C A    +A  +FE M  +G            I+ VA  +  +++    LLG 
Sbjct: 215 TSLLQCYCNAGRPDDANGVFERMSQRGWV----DEHVLTILAVAFSKWGKVDGAVELLGR 270

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   G  P   T   ++ G     ++++A +  ++MG+ G+   +  Y+  ++ LC  K 
Sbjct: 271 MELLGMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKE 330

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE--PDGAF--ETWHEMDKRGCAQDVD 413
             +A++L+  M      P  +    ++  +   G+    G F  E   ++   G    + 
Sbjct: 331 IGKAVKLFEEMKRGEVAPDARLLKKMLEAFCREGDFAIAGLFINENARQLKPSGV---IA 387

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            + V+++G  +  + E A  LL  ++  G
Sbjct: 388 LFNVVLEGFVNHGQAEAAYQLLTSMIRGG 416



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 146/363 (40%), Gaps = 50/363 (13%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E++  +   + + L +L  A  K G VD A  +  R++   ++P+  T ++L        
Sbjct: 235 ERMSQRGWVDEHVLTILAVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHGFAKQL 294

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                M+  ++M   G       Y+  I+  C+ + + +A  LFE M+ +G    +P A+
Sbjct: 295 RLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKAVKLFEEMK-RGEV--APDAR 351

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCL---PD--VSTYKEVLEGMCLAGKVEEAYK 328
               M+ A  +    E  F++ G  IN       P   ++ +  VLEG    G+ E AY+
Sbjct: 352 LLKKMLEAFCR----EGDFAIAGLFINENARQLKPSGVIALFNVVLEGFVNHGQAEAAYQ 407

Query: 329 FLEEM--GNKGYP-----------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
            L  M  G +G                   P+  ++N  +  LC  K  D AL L   M 
Sbjct: 408 LLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSFNIVVCGLCKVKKLDNALALIKDMT 467

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
            +GC   +  +N LI     L   D  ++ ++ M   G      TY  +  G+  C + +
Sbjct: 468 GIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLMKNLGLIPSEFTYNSLFYGI--CRRKD 525

Query: 430 EACF--LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK--FYNPVIARRL 485
             C   LL ++   G +   +     + QL + G +    +  D M K  F   ++    
Sbjct: 526 PNCALDLLRDMRTNGHRPWIKNCTEMVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSA 585

Query: 486 ALN 488
           A+N
Sbjct: 586 AMN 588


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 16/286 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K +P +   N ++D LCK   +D A  + K ++ K ++PN  TY+ L             
Sbjct: 46  KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 105

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + L +MI+    PD FT++  ID F K   + EA  L++ M  +      P+  TY+ +
Sbjct: 106 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI---DPSIVTYSSL 162

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I     +DR++E   +   M++  C PDV TY  +++G C   +VEE  +   EM  +G 
Sbjct: 163 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 222

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             + VTYN  ++ L    + D A  ++  M+  G  P++ TYN L+    + G+ + A  
Sbjct: 223 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 282

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +  + +      + TY +MI+G+    KVE+   L   +  KG+K
Sbjct: 283 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 328



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 134/290 (46%), Gaps = 25/290 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP++    ++++ LCK G  D A                 +N+L      +M Q    P 
Sbjct: 13  QPDLVTYGVVVNGLCKRGDTDLA-----------------FNLL-----NKMEQGKLEPG 50

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              YNT ID  CK + + +A +LF+ M TKG     P   TY+ +I  L    R  +   
Sbjct: 51  VLIYNTIIDGLCKYKHMDDALNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASR 107

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  MI     PDV T+  +++     GK+ EA K  +EM  +   P IVTY+  +   C
Sbjct: 108 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 167

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            +   DEA +++  M+   C+P V TYN LI  + +    +   E + EM +RG   +  
Sbjct: 168 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 227

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           TY ++I GLF     + A  + +E+V+ G+      +++ L  L   G L
Sbjct: 228 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 277



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 126/286 (44%), Gaps = 16/286 (5%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPN 210
           FV    L+   K Y E +K    P I   + L++  C    +D A+ + +  V     P+
Sbjct: 131 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 190

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             TYN L            GM+   EM Q G   +  TYN  I    +A     A ++F+
Sbjct: 191 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 250

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M + G     P   TY  ++  L +N ++E+   +  ++  S   P + TY  ++EGMC
Sbjct: 251 EMVSDGV---PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 307

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AGKVE+ +     +  KG  PD+V YN  +   C   + +EA  L+  M E G  P+  
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 367

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            YN LI      G+ + + E   EM   G A D  T  ++ + L D
Sbjct: 368 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 413



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 30/355 (8%)

Query: 114 EP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY------ 165
           EP  L YN +ID L   K+      L   M     R N   V    L+  L  Y      
Sbjct: 48  EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN--VVTYSSLISCLCNYGRWSDA 105

Query: 166 ----TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
               ++ I+ K  P++   + L+DA  K G LV+  +   + VK  + P+  TY+ L   
Sbjct: 106 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING 165

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      Q  E M+     PD  TYNT I  FCK + V E  ++F  M  +G   +
Sbjct: 166 FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 225

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           + T   Y I+I  L Q    +    +   M++ G  P++ TY  +L+G+C  GK+E+A  
Sbjct: 226 TVT---YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 282

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             E +      P I TYN  ++ +C     ++   L+  +   G  P V  YN +IS + 
Sbjct: 283 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 342

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             G  + A   + EM + G   +   Y  +I         E +  L++E+ + G 
Sbjct: 343 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 397



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 7/191 (3%)

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           +L+  M+  GC PD+ TY  V+ G+C  G  + A+  L +M      P ++ YN  +  L
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C  K+ D+AL L+  M   G  P+V TY+ LIS     G    A     +M +R    DV
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            T+  +ID      K+ EA  L +E+V        R  D  ++  S + +   +H   D 
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVK-------RSIDPSIVTYSSLINGFCMHDRLDE 174

Query: 473 MRKFYNPVIAR 483
            ++ +  ++++
Sbjct: 175 AKQMFEFMVSK 185



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+  L + G  D A+ I K  V + V PN  TYN L             M   E + +
Sbjct: 230 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 289

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P  +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +   
Sbjct: 290 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV---KPDVVAYNTMISGFCRKGS 346

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            EE  +L   M   G LP+   Y  ++      G  E + + ++EM + G+  D  T   
Sbjct: 347 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 406

Query: 348 FLKVLCDNK 356
              +L D +
Sbjct: 407 VTNMLHDGR 415



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           + L  RM+  GC P + TY ++++   + G+ D AF   ++M++      V  Y  +IDG
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           L     +++A  L +E+  KG++     + S +  L   G    A   LSD + +  NP
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 119


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 23/332 (6%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAET 198
           S++DY+ +N K            K +   +K   +P+I     LL      G LV+  + 
Sbjct: 117 SLMDYLCKNGKCTEA-------RKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDL 169

Query: 199 ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
           +   V+N ++ + + +NIL             +    +M Q G  P+   Y T ID  CK
Sbjct: 170 LALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCK 229

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              + +A   FE M  KG T   P    Y  +I AL   D+ E+   L+  +++ G  P+
Sbjct: 230 LGRLDDAMLNFEQMIDKGLT---PNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPN 286

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +  +  +L+ +C  G+V E+ K  + +G+ G  PD++TY+  +   C     D A++L  
Sbjct: 287 IVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLT 346

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+ VG  P   TY+ LI+ Y ++   + A   + EM+  G   D+ TY +++ GLF   
Sbjct: 347 GMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTR 406

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           +   A  L   +   G +L    ++  LM  +
Sbjct: 407 RTAAAKELYARITESGTQLELSTYNIILMDFA 438



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 12/306 (3%)

Query: 175 PEINALNLLLDALCKCGLVDYAE-TICKRVKNKVKPNANTYNIL--------GMQTLEEM 225
           P++ + N ++D L K G VD A  T  + +  +V P+A TYN +         M    E+
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           + +   P+ FTYN+ +  +C +    +A  +F  M + G     P   TY  ++  L +N
Sbjct: 69  LTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGI---EPDVVTYNSLMDYLCKN 125

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +  E   +   M+  G  PD++TY  +L G    G + E +  L  M   G   D   +
Sbjct: 126 GKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVF 185

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +      +  DE + ++ +M + G  P+   Y  +I    +LG  D A   + +M  
Sbjct: 186 NILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMID 245

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           +G   +V  Y  +I  L    K E+A  L+ E++++G+      F++ L  L   G +  
Sbjct: 246 KGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIE 305

Query: 466 IHKLSD 471
             KL D
Sbjct: 306 SKKLFD 311



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 4/167 (2%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C PDV +Y  +++G+   G V++AY    EM ++   PD VTYN  +  L   +  D A+
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM 66

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +   M+   C+    TYN ++  Y   G+ + A   + +M   G   DV TY  ++D L
Sbjct: 67  EVLTVMVMPNCF----TYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
               K  EA  + + +V +GLK     + + L   +  G L  +H L
Sbjct: 123 CKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDL 169


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 117/225 (52%), Gaps = 3/225 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  EEM +   A +  TYN  I   C++  V EA    E M   G    SP A TY  ++
Sbjct: 266 KVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGL---SPDAFTYGALM 322

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +  R++E  +LL  M  SG  P+V  Y  +++G    GK  EA+  L EM + G  
Sbjct: 323 NGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQ 382

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+ + Y+  ++ LC       A +L   MI+VG  P   TY+ L+  +F+  + DGAFE 
Sbjct: 383 PNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFEL 442

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +EM   G   +  TY +MI+GL    + +EA  LLEE++++GLK
Sbjct: 443 LNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLK 487



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 157/346 (45%), Gaps = 24/346 (6%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSML-DYMKRNNKVFVPVDV-------LLMILKQYTEKI 169
           Y +MI+ L       +   L+  M+ + +K N  ++ P+ +       + +  +      
Sbjct: 458 YGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMT 517

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL----------- 217
           K    P++   N L+  L   G ++ AE    +V K  + P+  TY+ L           
Sbjct: 518 KANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLE 577

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              Q L++M+  G  P+  TY   ++ + K+    + + + + M   G     P    Y 
Sbjct: 578 KADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGD---KPDNHIYG 634

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           I+I  L +++ ME  F +L  +  +G +PD+  Y  ++ G+C    +E+A   L+EM  +
Sbjct: 635 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKE 694

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P IV YN  +   C + +   A  ++  ++  G  P+  TY  LI    + G+   A
Sbjct: 695 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDA 754

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           F+ + +M  RG A D   Y V+  G  D + +E+A FL EE+ N+G
Sbjct: 755 FDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 136/317 (42%), Gaps = 18/317 (5%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           L+  LK + E   +   P++   +  L+A CK    D A+ + + ++ +    N  TYN+
Sbjct: 228 LVWKLKGFMEGAGIP--PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNV 285

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           +                 EEM+  G +PD FTY   ++  CK   + EA  L + M   G
Sbjct: 286 MISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSG 345

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P    YA ++   ++  +  E F +L  MI++G  P+   Y  ++ G+C  G++ 
Sbjct: 346 L---KPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLG 402

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            A K L EM   G+ PD  TY+  ++    + + D A  L   M   G  P+  TY ++I
Sbjct: 403 RASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMI 462

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   + GE   A     EM   G   +   Y  +I G      +  AC  LE +    + 
Sbjct: 463 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVL 522

Query: 445 LPYRKFDSYLMQLSVIG 461
                ++S +  LS +G
Sbjct: 523 PDLFCYNSLIKGLSTVG 539



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 147/349 (42%), Gaps = 23/349 (6%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           +++D   +  K     D+L        E I    QP     + L+  LCK G +  A  +
Sbjct: 355 TLVDGFMKEGKAAEAFDIL-------NEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKL 407

Query: 200 CKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
               +K   +P+  TY+ L              + L EM   G  P+ +TY   I+  C+
Sbjct: 408 LNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQ 467

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
                EA +L E M ++G     P A  YA +I+   +   +      L +M  +  LPD
Sbjct: 468 NGESKEAGNLLEEMISEGL---KPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPD 524

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           +  Y  +++G+   G++EEA ++  ++  +G  PD  TY+  +   C  +N ++A +L  
Sbjct: 525 LFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQ 584

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           +M+  G  P+  TY  L+  YF+  + +        M   G   D   Y ++I  L    
Sbjct: 585 QMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSE 644

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +E A  +L EV   GL      + S +  L  + D+     L D M K
Sbjct: 645 NMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAK 693



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 3/235 (1%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +DT+ K   V  AA +   M   G    +PT +    ++  L++ D ME  + L G M  
Sbjct: 182 VDTYKKNGSVRTAAQVVLMM---GDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEG 238

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +G  PDV TY   LE  C A   + A K  EEM  +    + VTYN  +  LC +   +E
Sbjct: 239 AGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 298

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A      M++ G  P   TY  L++   + G    A     EM   G   +V  Y  ++D
Sbjct: 299 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVD 358

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           G     K  EA  +L E+++ G++     +D+ +  L  IG LG   KL + M K
Sbjct: 359 GFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIK 413



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 133/318 (41%), Gaps = 17/318 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y +  K    P+    + L+   CK   ++ A+ + +++ N  +KPNA+TY  L      
Sbjct: 548 YAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFK 607

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L+ M+  G  PDN  Y   I    ++  +  A  +   +   G     P 
Sbjct: 608 SNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLV---PD 664

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y+ +I  L +   ME+   LL  M   G  P +  Y  +++G C +G +  A    +
Sbjct: 665 LHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFD 724

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            +  KG  P+ VTY   +   C N +  +A  LY  M++ G  P    YN+L +   +  
Sbjct: 725 SILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAA 784

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + + A     EM  RG A  V  +  ++ G     +++E   LL  ++++ +    +  +
Sbjct: 785 DLEQALFLTEEMFNRGYAH-VSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVE 843

Query: 452 SYLMQLSVIGDLGAIHKL 469
           + + +    G L   H++
Sbjct: 844 NVITEFGKAGKLCEAHRV 861



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 17/183 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E  K   +P I   N L+D  C+ G +  A  +   +  K + PN  TY  L        
Sbjct: 690 EMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNG 749

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                    ++M+  G APD F YN        A  + +A  L E M  +G    S    
Sbjct: 750 DITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVS---- 805

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            ++ ++    +  R++E   LL  M++   +P+  T + V+     AGK+ EA++   E+
Sbjct: 806 LFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAEL 865

Query: 334 GNK 336
             K
Sbjct: 866 QQK 868


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 172/379 (45%), Gaps = 27/379 (7%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
           GV     F + +AF  F WA + + + H P  Y  MID+       A+       M DY 
Sbjct: 119 GVRHGIPFPQTLAF--FNWATNLEEFGHSPEPYMEMIDLAGKAGLAAEAVHAFNRMEDYG 176

Query: 146 KRNNKVFVPVDVLLMILKQ-------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
            + +K+   V +  +  K+       + + +K + +P++     L+   C+ G +  AE 
Sbjct: 177 CKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAER 236

Query: 199 ICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
           +   +K   ++PN  TY+I+                  EMI +G  P+  T+N  +    
Sbjct: 237 VFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHV 296

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           KA    +   ++  M+  G     P A TY  +I +  ++D +EE   +L + +  GC  
Sbjct: 297 KAGRTEKVLQVYNQMKRLGCP---PDAITYNFLIESHCRDDNLEEAVKIL-NSVKKGCNL 352

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           + S++  +   +   G V  A++   +M +    P+ VTYN  +++  D K+ D  L+L 
Sbjct: 353 NASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLR 412

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFD 424
             M E    P+  TY +LIS +  +G  + A+  + EM +  C +  +  Y +++  L  
Sbjct: 413 KEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRK 472

Query: 425 CSKVEEACFLLEEVVNKGL 443
             ++++   L+E++VN+G 
Sbjct: 473 AGQLKKHEELVEKMVNRGF 491



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 7/248 (2%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + GH+P+   Y   ID   KA +  EA   F  M   G     P    ++++I +L +  
Sbjct: 141 EFGHSPE--PYMEMIDLAGKAGLAAEAVHAFNRMEDYGC---KPDKIAFSVVISSLSKKR 195

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  E  S    + +    PDV  Y  ++ G C AG + EA +   EM   G  P++ TY+
Sbjct: 196 RAIEAQSFFDSLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYS 254

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC +     A  ++  MI+VGC P+  T+N L+ ++ + G  +   + +++M + 
Sbjct: 255 IVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRL 314

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
           GC  D  TY  +I+       +EEA  +L   V KG  L    F+     +S +GD+ + 
Sbjct: 315 GCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSA 373

Query: 467 HKLSDHMR 474
           H++   M+
Sbjct: 374 HRMFAKMK 381


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 167/388 (43%), Gaps = 19/388 (4%)

Query: 69  EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
           E+++  +  P  T S V  L     + + A  F  W     N+ H   +Y  ++ +L S 
Sbjct: 14  EQSISKISYPFYTPSHVSSLFSLNLDPQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQ 73

Query: 129 KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
           +   +  ++   M+            VD    + K  + +IK K  P+    N LL +L 
Sbjct: 74  EIPYEVPKITILMIKSCNSVRDALFVVDFCRTMRKGDSFEIKYKLTPK--CYNNLLSSLA 131

Query: 189 KCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNF 235
           + GLV+  + +  + +++ V P+  T+N L              Q +  +IQ G  PD F
Sbjct: 132 RFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYF 191

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY + I   C+ + V  A  +F+ M   G         +Y  +I  L +  +++E  SLL
Sbjct: 192 TYTSFITGHCRRKEVDAAFKVFKEMTQNGC---HRNEVSYTQLIYGLFEAKKIDEALSLL 248

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M +  C P+V TY  +++ +C +G+  EA    ++M   G  PD   Y   ++  C  
Sbjct: 249 VKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSG 308

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              DEA  L   M+E G  P+V TYN LI  + +      A     +M ++    D+ TY
Sbjct: 309 DTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITY 367

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +I G      ++ A  LL  +   GL
Sbjct: 368 NTLIAGQCSSGNLDSAYRLLSLMEESGL 395



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 7/230 (3%)

Query: 250 VTEAADLFEFMRT--KGSTIS---SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           V +A  + +F RT  KG +       T K Y  ++ +L +   +EE   L   M+     
Sbjct: 93  VRDALFVVDFCRTMRKGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVS 152

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PD+ T+  ++ G C  G V EA +++  +   G  PD  TY  F+   C  K  D A ++
Sbjct: 153 PDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKV 212

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M + GC  +  +Y  LI   FE  + D A     +M    C  +V TY V+ID L  
Sbjct: 213 FKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCG 272

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHM 473
             +  EA  L +++   G+K P     + L+Q    GD L     L +HM
Sbjct: 273 SGQKSEAMNLFKQMSESGIK-PDDCMYTVLIQSFCSGDTLDEASGLLEHM 321



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 16/145 (11%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  TY +L             M   ++M + G  PD+  Y   I +FC    + EA+ L
Sbjct: 258 PNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGL 317

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            E M   G     P   TY  +I    + + + +   LL  M+    +PD+ TY  ++ G
Sbjct: 318 LEHMLENGLM---PNVITYNALIKGFCKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAG 373

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPD 341
            C +G ++ AY+ L  M   G  P+
Sbjct: 374 QCSSGNLDSAYRLLSLMEESGLVPN 398


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N+L+ A   CG++D A  I   +++  VKPN  TY  +             M+ 
Sbjct: 392 PVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEK 451

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G APD + Y+  I  FC    + +A +L   +   G  +       ++ +I  
Sbjct: 452 FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLD---IVLFSSIINN 508

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  P    Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 509 LCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V Y   +   C     DE L L+  M++ G  PS   YN++I   FE G    A   +H
Sbjct: 569 DVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFH 628

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A +  TY +++ GLF     +EA FL +E+    +K+
Sbjct: 629 EMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 672



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 23/301 (7%)

Query: 164 QYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYN 215
           Q+ E ++V  +       P++   N+L+ +LCK G +  A  +   +  K + P+  +YN
Sbjct: 304 QWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 363

Query: 216 IL--GMQTLEEMIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           I+  G  T   ++ M          G AP   T+N  I  +    M+ +A  +F  MR  
Sbjct: 364 IMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH 423

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY  +I AL +  +M++       MI+ G  PD   Y  +++G C  G +
Sbjct: 424 G---VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +A + + E+ N G   DIV ++  +  LC      +A  ++   + VG  P+   Y+ML
Sbjct: 481 LKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSML 540

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  Y  +G+ + A   +  M   G   +   Y  +++G     +++E   L  E++ KG+
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 600

Query: 444 K 444
           K
Sbjct: 601 K 601



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 53/337 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNIL------------GM 219
           P++ + ++LL +LC  G    A+ + + +        P+   YN +              
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKAC 239

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              +EM+Q G  PD  TY++ +   CKAR + +A      M  KG     P   TY  +I
Sbjct: 240 DLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL---PNNWTYNNLI 296

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                  + +E   +   M     LPDV T+  ++  +C  GK++EA    + M  KG  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 340 PDIVTYNCFLK-------------------------VLC----------DNKNGDEALRL 364
           PD+ +YN  L                          V+C          +    D+A+ +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 416

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M + G  P+V TY  +I+    +G+ D A E +++M  +G A D   Y  +I G   
Sbjct: 417 FNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              + +A  L+ E++N G+ L    F S +  L  +G
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLG 513



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P+    + ++ ALCK   +D AE   +++ NK V PN  TYN L      
Sbjct: 242 FKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSS 301

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD  T+N  + + CK   + EA D+F+ M  KG    +P 
Sbjct: 302 TGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQ---NPD 358

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  P + T+  +++     G +++A     
Sbjct: 359 VFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFN 418

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  P+++TY   +  LC     D+A+  + +MI+ G  P    Y+ LI  +   G
Sbjct: 419 EMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 478

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A E   E+   G   D+  +  +I+ L    +V +A  + +  VN GL
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   D+     +L+G C A
Sbjct: 100 RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEA 159

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +Y+  LK LCD     +A  L   M E G  C P V
Sbjct: 160 KRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDV 219

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN +I  +F+ G+ + A + + EM +RG   D  TY  ++  L     +++A   L +
Sbjct: 220 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279

Query: 438 VVNKGLKLP 446
           +VNKG+ LP
Sbjct: 280 MVNKGV-LP 287



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 120/290 (41%), Gaps = 42/290 (14%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L    ++G  PD F+Y+  + + C      +A DL   M  +G  + SP    Y  +I  
Sbjct: 170 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMM-AEGGAVCSPDVVAYNTVIDG 228

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + +   L   M+  G  PD  TY  V+  +C A  +++A  FL +M NKG  P+
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +          EA+R++  M      P V T+NML+    + G+   A + + 
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFD 348

Query: 402 EMDKRGCAQDVDTYCVMIDG------------LFD-----------------------CS 426
            M  +G   DV +Y +M++G            LFD                       C 
Sbjct: 349 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCG 408

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +++A  +  E+ + G+K       + L   +VI  L  I K+ D M KF
Sbjct: 409 MLDKAMIIFNEMRDHGVK------PNVLTYTTVIAALCRIGKMDDAMEKF 452



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 16/250 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P ++TY IL             +    ++++ G   D    N  +  FC+A+   EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKE 312
           D+      +   +  P   +Y+I++ +L    +  +   LL  M   G  C PDV  Y  
Sbjct: 167 DILLHRTPELGCV--PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNT 224

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V++G    G V +A    +EM  +G PPD VTY+  +  LC  +  D+A     +M+  G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+  TYN LI  Y   G+   A   + EM ++    DV T+ +++  L    K++EA 
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEAR 344

Query: 433 FLLEEVVNKG 442
            + + +  KG
Sbjct: 345 DVFDTMAMKG 354



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 16/242 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMG 229
           +++ LCK G V  A+ I     N  + P A  Y++L             ++  + M+  G
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P++  Y T ++ +CK   + E   LF  M  KG     P+   Y I+I  L +  R  
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI---KPSTILYNIIIDGLFEAGRTV 621

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
                   M  SG   +  TY  VL G+      +EA    +E+       DI+T N  +
Sbjct: 622 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 681

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             +   +  +EA  L+  +   G  P V TY+++I+   + G  + A + +  M   GC 
Sbjct: 682 AGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 410 QD 411
            D
Sbjct: 742 PD 743



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR- 363
           P   TY  +++    A + E A  F  ++   G   DI+  N  LK  C+ K  DEAL  
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 168

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG--CAQDVDTYCVMIDG 421
           L  R  E+GC P V +Y++L+    + G+   A +    M + G  C+ DV  Y  +IDG
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDG 228

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            F    V +AC L +E+V +G+   +  + S +  L
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHAL 264



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V   P     ++L+D  C  G ++ A  +    V   ++PN   Y  L          
Sbjct: 526 VNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRI 585

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G+    EM+Q G  P    YN  ID   +A     A   F  M   G  ++  T   Y
Sbjct: 586 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT---Y 642

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I++  L +N   +E   L   +       D+ T   ++ GM    +VEEA      +  
Sbjct: 643 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 702

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P +VTY+  +  L      +EA  ++  M   GC P  +  N ++    +  E   
Sbjct: 703 SGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVR 762

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     ++D+R  + +  T  +++D
Sbjct: 763 AGAYLSKIDERNFSLEHLTTMLLVD 787


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 26/284 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E   V   P++    +L+D+ CK GL++ A+ + + +++    P   TY  L      
Sbjct: 480 FQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 539

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTIS-- 268
                        M+  G  P++ TY   +D  CKA  +++A +++ + + T  S  S  
Sbjct: 540 AKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDF 599

Query: 269 ----------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
                     +P   TY  ++  L +  +++    LL  M++SGC P+   Y  +++G C
Sbjct: 600 YFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFC 659

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            AGK++ A +   +M   GY P + TY   +  +  +   D A+++  +M++  C P+V 
Sbjct: 660 KAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVV 719

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           TY  +I     +GE + A +    M+++GC+ +V TY  +IDGL
Sbjct: 720 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 763



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 154/408 (37%), Gaps = 75/408 (18%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           LT   VV VL   +   ++  RFF+WA  Q  Y+H    Y+ + D L             
Sbjct: 103 LTDSVVVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALG------------ 150

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
               D   R+ +          +L++  E+ +   +     LN+L+   C+ G+ + A  
Sbjct: 151 ---FDGRARDAE---------RLLREIGEEDR---EVLGRLLNVLVRRCCRGGMWNEALE 195

Query: 199 ICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
              R+K+   +P+  TYN L            G +  +EM + G   D FT        C
Sbjct: 196 ELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALC 255

Query: 246 KARMVTEAADLFE-----------------------------FMRTKGSTISSPTAKTYA 276
           K     +A D+ E                             F+         P   TY 
Sbjct: 256 KEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYR 315

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++   ++  ++  C  ++  M+  GC P+ S +  ++   C       AYK L  M   
Sbjct: 316 TLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTC 375

Query: 337 GYPPDIVTYNCFLKVLCDNKN------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           G PP  V YN F+  +C  +        D A ++YG M+   C  +             +
Sbjct: 376 GCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGV 435

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           G+ D AF+   EM ++G   D  TY  +I  L   +KVE+A  L +E+
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 483



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 26/255 (10%)

Query: 200 CKRVKNKV-----KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           CKR+ N +      PN + +N L              + L  M   G  P    YN  I 
Sbjct: 330 CKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIG 389

Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           + C         ++  A  ++  M      ++      +A  +  + + D+    F L+ 
Sbjct: 390 SICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKA---FQLIK 446

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+  G +PD STY +V+  +C A KVE+A+   +EM   G  PD+ TY   +   C   
Sbjct: 447 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 506

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A  L+  M  VGC P+V TY  LI  Y +  +   A + +H M   GC  +  TY 
Sbjct: 507 LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 566

Query: 417 VMIDGLFDCSKVEEA 431
            ++DGL     + +A
Sbjct: 567 ALVDGLCKAGNISKA 581



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 155/360 (43%), Gaps = 40/360 (11%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL--VDYAETICKRVKNK-VKPNAN 212
           D+L +  K Y E +       +N +N+   A C CG+   D A  + K +  K   P+ +
Sbjct: 401 DLLDLAEKIYGEMLAANCV--LNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTS 458

Query: 213 TYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           TY+ +                 +EM  +G  PD +TY   ID+FCKA ++ +A  LFE M
Sbjct: 459 TYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 518

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R+ G    SPT  TY  +I A ++  ++ +   +   M+++GC P+  TY  +++G+C A
Sbjct: 519 RSVGC---SPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 575

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           G + +A++   ++       D   Y       C++++                 P+V TY
Sbjct: 576 GNISKAFEVYAKLIGTSDSADSDFY-----FPCEDRHT--------------LAPNVVTY 616

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             L+    +  + D A E    M   GC  +   Y  +IDG     K++ A  +  ++  
Sbjct: 617 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 676

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
            G       + S + ++   G L  A+  LS  ++    P +    A+     RI   EK
Sbjct: 677 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK 736



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 153/372 (41%), Gaps = 43/372 (11%)

Query: 106 GHQDNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP--------- 154
           G   ++ + P  + YN ++ +LSS       FR+   M +     ++  V          
Sbjct: 198 GRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 257

Query: 155 ---VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPN 210
               D L MI +   E  K+ T    + ++ L++A       D A +   R++ N   PN
Sbjct: 258 GRWADALDMIER---EDFKLDTVLCTHMISGLMEA----SYFDEAMSFLHRMRCNSCIPN 310

Query: 211 ANTYNILGMQTLEE------------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             TY  L    L++            M+  G  P+   +N+ + ++C  +    A  L  
Sbjct: 311 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 370

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEE------CFSLLGHMINSGCLPDVSTYKE 312
            M T G     P    Y I I ++   +++           + G M+ + C+ +      
Sbjct: 371 RMTTCGC---PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVAN 427

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
               +C  GK ++A++ ++EM  KG+ PD  TY+  +  LC     ++A  L+  M  VG
Sbjct: 428 FARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG 487

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P V TY +LI  + + G  + A   + EM   GC+  V TY  +I       +V +A 
Sbjct: 488 VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 547

Query: 433 FLLEEVVNKGLK 444
            +   +V+ G +
Sbjct: 548 DIFHRMVDAGCR 559


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 139/296 (46%), Gaps = 17/296 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL--GM 219
           K + E  +    P+I   N L+D+LCK      A  I   +  K  KP+  +Y+IL  G 
Sbjct: 363 KMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGY 422

Query: 220 QTLEEMIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
            T    + M          G   D+  +N  I+   K  M+ EA  +F  MR +G    S
Sbjct: 423 ATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGV---S 479

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TYA +I AL +  R+ +    L  MI+ G  P+   Y  +++G C  G + +A + 
Sbjct: 480 PNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKEL 539

Query: 330 LEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           + EM ++G P P+I  ++  +  LC+      A  ++  +I +G  P + T+N LI  Y 
Sbjct: 540 VSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYC 599

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +G+ D AF     M   G   DV TY  +I+G F   ++++   L  E++ K +K
Sbjct: 600 LVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVK 655



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 137/281 (48%), Gaps = 15/281 (5%)

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEE 224
           +  N+L++A  K G++D A  I   ++ + V PN  TY  +             M+ L +
Sbjct: 448 HCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQ 507

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MI +G  P+   Y++ I  FC    + +A +L   M  +G  I  P    ++ +I +L  
Sbjct: 508 MISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG--IPRPNITFFSSIIHSLCN 565

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+     +   +I+ G  PD+ T+  +++G CL GK+++A+  L+ M + G  PD+VT
Sbjct: 566 EGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVT 625

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+  +     +   D+ L L+  M+     P+  TY++++   F  G    A + +HEM 
Sbjct: 626 YSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMI 685

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           + G A  + TY +++ GL   +  +EA  L  ++    LK 
Sbjct: 686 ESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKF 726



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 38/285 (13%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M ++G  PD F+YNT I + C      EA D+   M TKG    SP   +Y ++I  
Sbjct: 224 LHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRM-TKGDG-CSPDVVSYTMVIHG 281

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA--------------------- 320
           L     + +  +L   M+  G +P+V TY  ++  +C A                     
Sbjct: 282 LFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPD 341

Query: 321 --------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                         G+ +EA K  +EM  +G  PDIVT+N  +  LC +K   EA  ++ 
Sbjct: 342 EVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFH 401

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            +   G  P + +Y++L+  Y   G        +H M   G   D   + ++I+      
Sbjct: 402 SIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRG 461

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLS 470
            ++EA  +  E+  +G+      + + +  L  +G L  A+ KLS
Sbjct: 462 MMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLS 506



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 5/230 (2%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTY 275
           LG      +++ G   D    NT +   C A+   EA   L   M   G     P A +Y
Sbjct: 183 LGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCV---PDAFSY 239

Query: 276 AIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
             +I +L    R +E   +L  M    GC PDV +Y  V+ G+ + G++ +A     EM 
Sbjct: 240 NTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMV 299

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            KG  P++VTYN  +  LC  +  D+A  +  +M +    P   TY  +I  Y  LG   
Sbjct: 300 QKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWK 359

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            A + + EM + G   D+ T+  ++D L    + +EA  +   +  KG K
Sbjct: 360 EAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHK 409



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 135/316 (42%), Gaps = 17/316 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKV-KPN--------- 210
           +++ ++ I +  +P     + L+   C  G L+   E + + +   + +PN         
Sbjct: 502 MEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIH 561

Query: 211 --ANTYNILGMQTLEEM-IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
              N   ++  Q +  + I +G  PD FT+N+ ID +C    + +A  + + M + G+  
Sbjct: 562 SLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGT-- 619

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY+ +I    ++ R+++   L   M+     P   TY  VL+G+  AG+   A 
Sbjct: 620 -EPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAK 678

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           K   EM   G    I TY   L+ LC N   DEA+ L+ ++  +     +   N +I   
Sbjct: 679 KMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHAL 738

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           +++   + A + +  +   G   +  TY VMI  L     VEEA  +   +   G     
Sbjct: 739 YKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSS 798

Query: 448 RKFDSYLMQLSVIGDL 463
           R  +  +  L   G++
Sbjct: 799 RLLNDIIRMLLQKGEI 814



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 111/270 (41%), Gaps = 38/270 (14%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+Q G  P+  TYN+ +   CKAR + +A  +   +R        P   TY  MI  
Sbjct: 295 FNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELV---LRQMFDNSIQPDEVTYTAMIHG 351

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                R +E   +   M   G +PD+ T+  +++ +C   + +EA +    +  KG+ PD
Sbjct: 352 YSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPD 411

Query: 342 IVTYNCFLK----------------VLCDN-----------------KNG--DEALRLYG 366
           I++Y+  L                  + DN                 K G  DEAL ++ 
Sbjct: 412 IISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFT 471

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M   G  P+V TY  +I+    +G    A E   +M   G   +   Y  +I G     
Sbjct: 472 EMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHG 531

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            + +A  L+ E++++G+  P   F S ++ 
Sbjct: 532 DLIKAKELVSEMMDQGIPRPNITFFSSIIH 561



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR-LY 365
           V TY  +++  C A + +    F   +   G   D +  N FLK LC  K  DEAL  L 
Sbjct: 165 VHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLL 224

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFD 424
            RM E+GC P   +YN +I           A +    M K  GC+ DV +Y ++I GLF 
Sbjct: 225 HRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFM 284

Query: 425 CSKVEEACFLLEEVVNKGL 443
             ++ +AC L  E+V KG+
Sbjct: 285 EGEISKACNLFNEMVQKGV 303



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 2/200 (1%)

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G  +   T  TY I++    +  R +   +    ++ +G   D       L+ +C A + 
Sbjct: 157 GPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRT 216

Query: 324 EEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYN 381
           +EA    L  M   G  PD  +YN  +K LC      EAL +  RM +  GC P V +Y 
Sbjct: 217 DEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYT 276

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           M+I   F  GE   A   ++EM ++G   +V TY  ++  L     +++A  +L ++ + 
Sbjct: 277 MVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDN 336

Query: 442 GLKLPYRKFDSYLMQLSVIG 461
            ++     + + +   S +G
Sbjct: 337 SIQPDEVTYTAMIHGYSCLG 356


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 184/437 (42%), Gaps = 78/437 (17%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM-WAGHQDNYAHEPLAYNLMIDILS 126
           +E A+  L   ++TD+VV + Q  + +  +A+  F   +  +  + H     N ++D+ +
Sbjct: 12  IEAAVGRLRREISTDAVVKIFQCLK-DADLAWELFQCLSSPRFGFQHSVHTGNALLDVFA 70

Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVP----VDVLLM-------------ILKQYTEKI 169
            TK   +   L+ + L         F+P     +VL+              ++++  E  
Sbjct: 71  RTKRHREAGNLLKNEL------ATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDY 124

Query: 170 KVKTQPEINALNLLLDALCKCGLV----DYAETIC------------------------- 200
            V   P +   NL+L  LCK G V    D+ ET                           
Sbjct: 125 GV--APSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQ 182

Query: 201 -------KRVKNKVKPNANTYNIL-----GMQTLEEMIQM-------GHAPDNFTYNTAI 241
                  K   N   P   TYN L      M  LEE I +       G  PD  TY + I
Sbjct: 183 DAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 242

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           D   K +   EA  LF+ M  +G  + +     Y  +I  L+Q  ++ +  S+   M + 
Sbjct: 243 DGLGKEKRSFEAYKLFKEMALRGLVLDTVC---YTALIRGLLQAGKIPQASSVYKTMTSQ 299

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           GC+PDV T   +++G+C AG++  A +  + M  +G  P+ V Y+  +  LC  +  D A
Sbjct: 300 GCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 359

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           L +  +M +  C P   TYN+LI    + G+ + A   + EM + GC  DV TY +++ G
Sbjct: 360 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSG 419

Query: 422 LFDCSKVEEACFLLEEV 438
                  + AC + +++
Sbjct: 420 FCKAGNTDAACGVFDDM 436



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 32/369 (8%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAET 198
           +++D++ +N K+   V ++        EKI      P I   N LL+ LCK G ++ A  
Sbjct: 170 AIVDWLAKNKKIQDAVALM--------EKITANGCTPTIATYNALLNGLCKMGRLEEAID 221

Query: 199 ICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
           + ++ V N   P+  TY  L              +  +EM   G   D   Y   I    
Sbjct: 222 LLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLL 281

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           +A  + +A+ +++ M ++G     P   T + MI  L +  R+     +   M   G  P
Sbjct: 282 QAGKIPQASSVYKTMTSQGCV---PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 338

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +   Y  ++ G+C A K++ A + L +M      PD +TYN  +  LC + + + A   +
Sbjct: 339 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 398

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M+E GC P V TYN+L+S + + G  D A   + +M    C+ +V TY  +I GL   
Sbjct: 399 DEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKR 458

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485
            ++ +A    + +  +G       + S +  L   G L     L D M +         +
Sbjct: 459 RQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMER-------SGV 511

Query: 486 ALNQKRVRI 494
           A +Q R R+
Sbjct: 512 ANSQTRTRL 520



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 17/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
           Q  ++  N LLD   +      A  + K  +     P+  T+N+L               
Sbjct: 56  QHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFA 115

Query: 221 TLEEMIQ-MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            + EM +  G AP   T+N  +   CK+  V  A D FE   T G TI      TY  ++
Sbjct: 116 VIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTID---IHTYTAIV 172

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +N ++++  +L+  +  +GC P ++TY  +L G+C  G++EEA   L ++ + G  
Sbjct: 173 DWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 232

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD+VTY   +  L   K   EA +L+  M   G       Y  LI    + G+   A   
Sbjct: 233 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSV 292

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  M  +GC  DV T   MIDGL    ++  A  + + +  +GL
Sbjct: 293 YKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGL 336



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 122/273 (44%), Gaps = 26/273 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++  L+ ++D LCK G +  A  I K ++ +                      G AP+ 
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR----------------------GLAPNE 340

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  I   CKAR +  A ++   M+       +P   TY I+I  L ++  +E   + 
Sbjct: 341 VVYSALIHGLCKARKMDCALEMLAQMK---KAFCTPDTITYNILIDGLCKSGDVEAARAF 397

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M+ +GC PDV TY  ++ G C AG  + A    ++M +    P++VTY   +  LC 
Sbjct: 398 FDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCK 457

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
            +   +A   +  M E GC P    Y+ L+    + G+ +G    + EM++ G A    T
Sbjct: 458 RRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS-QT 516

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
              +I  L   ++V+EA  L   +  +G+  PY
Sbjct: 517 RTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPY 549



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           T N  +D F + +   EA +L   ++ + +T   P  +T+ ++I         EE F+++
Sbjct: 61  TGNALLDVFARTKRHREAGNL---LKNELATTFLPDVETWNVLITGYCLAREPEEAFAVI 117

Query: 296 GHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
             M    G  P + T+  VL G+C +GKV  A    E     G   DI TY   +  L  
Sbjct: 118 REMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAK 177

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
           NK   +A+ L  ++   GC P++ TYN L++   ++G  + A +   ++   GC  DV T
Sbjct: 178 NKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 237

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHK 468
           Y  +IDGL    +  EA  L +E+  +GL L    Y      L+Q   I    +++K
Sbjct: 238 YTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYK 294



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 36/163 (22%)

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+   + T N  L V    K   EA  L    +     P V+T+N+LI+ Y    EP+ A
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEA 113

Query: 397 FETWHEMDK------------------------------------RGCAQDVDTYCVMID 420
           F    EM++                                     GC  D+ TY  ++D
Sbjct: 114 FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVD 173

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            L    K+++A  L+E++   G       +++ L  L  +G L
Sbjct: 174 WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRL 216


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P I   N +L  LCK    D A+ + + +    V P+  ++NIL             M+
Sbjct: 224 KPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMK 283

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM Q G  PD  +++  I  F     +  AA     M+  G     P    Y ++I 
Sbjct: 284 FYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLV---PDGVIYTMVIG 340

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   M E   +   M+  GCLPDV TY  +L G+C   ++ +A + L EM  +G  P
Sbjct: 341 GFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTP 400

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+ T+   +   C + N ++AL+L+  ++     P V  YN LI      G+   A E W
Sbjct: 401 DLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELW 460

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +M  R    +  TY ++ID   +  +VEEA   L+E+V+KG
Sbjct: 461 DDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKG 502



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 145/302 (48%), Gaps = 17/302 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L+   E + +   P++   N LL+ LCK   +  AE +   +K + V P+  T+  L   
Sbjct: 352 LRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHG 411

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q  + ++     PD   YN+ ID  C+   + +A +L++ M  +     
Sbjct: 412 YCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIF-- 469

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+I+I +  +  ++EE F  L  M++ G LP++ TY  +++G C +G V++  +
Sbjct: 470 -PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           FL++M      PD++T+N  +      +N   A  ++  M +    P   TYNM+I+ + 
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFS 588

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           E G  + A   + +M   G   D  TY  +I+G       +EA  L +E++++G   P  
Sbjct: 589 EQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFA-PDD 647

Query: 449 KF 450
           KF
Sbjct: 648 KF 649



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 172/414 (41%), Gaps = 80/414 (19%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-----------L 162
           +P  ++L+I   + ++   + F     +LD+     +V VP      +           L
Sbjct: 86  QPQVFDLLIRTYTQSRKPREAFEAFRLLLDH-----RVPVPASASNALLAALSRAGWPHL 140

Query: 163 KQYTEKIKVKTQPEINA--LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
            +   ++ + +  E+NA  LN+++ + CK    D A+T+                     
Sbjct: 141 AEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTV--------------------- 179

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            + EM +    PD  T+N  ID   +A  V  A  L + M  KG     P   T+  ++ 
Sbjct: 180 -ISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGL---KPGIVTFNSVLK 235

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R ++   +   M      PDV ++  ++ G C  G+VEEA KF +EM  +G  P
Sbjct: 236 GLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTP 295

Query: 341 DIVTYNCFLKV-----------------------------------LCDNKNGDEALRLY 365
           D+V+++C + +                                    C   +  EALR+ 
Sbjct: 296 DVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVR 355

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M+ +GC P V TYN L++   +      A E  +EM +RG   D+ T+  +I G    
Sbjct: 356 DEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRD 415

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD--HMRKFY 477
              E+A  L + ++++ L+     ++S +  +   GDL   ++L D  H R+ +
Sbjct: 416 GNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIF 469


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 167/398 (41%), Gaps = 53/398 (13%)

Query: 115 PLAYNLMIDIL--SSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVDVLLM 160
           P  Y+++I  L  SS   KA +      +LD M RN             K +V      M
Sbjct: 451 PFTYSVLISGLCHSSDLQKANE------VLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI--- 216
            ++     I     P++   N L+  LC+   V+ A+ +   +  K +KPNA+TY     
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564

Query: 217 ---------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                    +  +  ++M+  G  P+N  Y   I   C      EA   F+ M  KG   
Sbjct: 565 LYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLI- 623

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P  + Y+ +I +L +N + +E   +    + +G +PDV  Y  ++ G C  G +E+A 
Sbjct: 624 --PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKAS 681

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  +EM + G  P+IV YN  +  LC      +A  L+  + E    P V TY+ +I  Y
Sbjct: 682 QLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGY 741

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            + G    AF+ + EM  +G + D   YC++IDG      +E+A  L  E   K      
Sbjct: 742 CKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS----- 796

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485
                       +G L A + L D   K    + AR L
Sbjct: 797 ------------VGSLSAFNSLIDSFCKHGKVIEAREL 822



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 24/353 (6%)

Query: 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195
           R   +++  + +N K    + V L  LK           P++   N L+   CK G ++ 
Sbjct: 627 RAYSAIIHSLSKNGKTKEAMGVFLKFLK-------TGVVPDVFLYNSLISGFCKEGDIEK 679

Query: 196 AETIC-KRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
           A  +  + + N + PN   YN L              +  +E+ +    PD  TY+T ID
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIID 739

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            +CK+  +TEA  LF+ M +KG    SP    Y I+I    +   +E+  SL  H     
Sbjct: 740 GYCKSGNLTEAFKLFDEMISKGI---SPDGYIYCILIDGCGKEGNLEKALSLF-HEAQQK 795

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
            +  +S +  +++  C  GKV EA +  ++M +K   P+IVTY   +      +  +EA 
Sbjct: 796 SVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAE 855

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +L+  M      P+  TY  L+  Y ++G        + +M+ RG A D   Y VM    
Sbjct: 856 QLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 915

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
               K  EA  LL + + +G+KL    FD+ +  L     +  + +L   M K
Sbjct: 916 CKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGK 968



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 180/450 (40%), Gaps = 69/450 (15%)

Query: 66  DNM-EKALDSLGVPLTT-DSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMID 123
           DNM EK L +   PL   DS+V   + F       F  F+       + +E  A ++ I 
Sbjct: 140 DNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNE--ASSVFIA 197

Query: 124 ILSSTKYKAKQFRLVCS---MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINAL 180
            +S   +      L+C    M D +K N        ++ +  K Y   ++ K  P++   
Sbjct: 198 SISEGFFPT----LICCNNLMRDLLKAN--------MMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
             ++ A CK G V   + +   ++ + KPN  TYN               ++  + M++ 
Sbjct: 246 TNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEK 305

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  PD  TY   +D FCK +   EA  +FE M + G    +P   TY  +I   ++   +
Sbjct: 306 GLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGL---NPNRFTYTALIDGFIKEGNI 362

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN-- 346
           EE   +   MI  G   +V TY  ++ G+  AG++ +A     EM   G  PD  TYN  
Sbjct: 363 EEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLL 422

Query: 347 ---------------------------------CFLKVLCDNKNGDEALRLYGRMIEVGC 373
                                              +  LC + +  +A  +  +MI  G 
Sbjct: 423 IDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGV 482

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P+V  Y  LI  Y +    + A E    M   G   D+  Y  +I GL    KVEEA  
Sbjct: 483 KPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKM 542

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           LL ++  KG+K     + +++   S  G++
Sbjct: 543 LLVDMGEKGIKPNAHTYGAFINLYSKSGEI 572



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 132/292 (45%), Gaps = 16/292 (5%)

Query: 183 LLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+D   K G ++ A  I  + +   +K N  TYN +             M    EM+  G
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD +TYN  ID + K+  + +A +L   M+ +  T   P+  TY+++I  L  +  ++
Sbjct: 412 LEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLT---PSPFTYSVLISGLCHSSDLQ 468

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   +L  MI +G  P+V  Y  +++      + E A + L+ M   G  PD+  YNC +
Sbjct: 469 KANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI 528

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K  +EA  L   M E G  P+  TY   I++Y + GE   A   + +M   G  
Sbjct: 529 IGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIV 588

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            +   Y ++I G  D     EA    + ++ KGL    R + + +  LS  G
Sbjct: 589 PNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNG 640



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 186/456 (40%), Gaps = 52/456 (11%)

Query: 41  FDESSDSVSDVA-----KLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEE 95
           FD   D+V + +     K ++ +++N    DN+ K        L  + V  VLQ+ + ++
Sbjct: 51  FDHYDDTVREFSMILKRKDWQILLNNE---DNVRK--------LNPEIVCSVLQKSEIDD 99

Query: 96  KIAFR-FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
            +  + FF W+  + +      +Y+++   L ++    +   ++  +L   K       P
Sbjct: 100 SVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKP------P 153

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI--------------- 199
           +++L  +++ Y E         +   ++ +D     G ++ A ++               
Sbjct: 154 LEILDSLVRCYREF----GGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLIC 209

Query: 200 CKRVKNKVKPNANTYNILGM--QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           C    N +  +    N++G+  +    M++    PD +TY   I   CK   V +   + 
Sbjct: 210 C----NNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVL 265

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M  +      P   TY   I  L Q   ++E   +   M+  G  PD  TY  +++G 
Sbjct: 266 SEMEKE----CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C   + +EA    E M + G  P+  TY   +       N +EALR+   MI  G   +V
Sbjct: 322 CKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNV 381

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TYN +I    + GE   A   ++EM   G   D  TY ++IDG      + +AC LL E
Sbjct: 382 VTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAE 441

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +  + L      +   +  L    DL   +++ D M
Sbjct: 442 MKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 116/318 (36%), Gaps = 50/318 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E +     P I   N L++ LCK G V  A  +   ++ K + P+  TY+ +      
Sbjct: 684 YDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCK 743

Query: 218 ------GMQTLEEMIQMGHAPDNFTY---------------------------------- 237
                   +  +EMI  G +PD + Y                                  
Sbjct: 744 SGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAF 803

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N+ ID+FCK   V EA +LF+ M  K  T   P   TY I+I A  + + MEE   L   
Sbjct: 804 NSLIDSFCKHGKVIEARELFDDMVDKKLT---PNIVTYTILIDAYGKAEMMEEAEQLFLD 860

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M     +P+  TY  +L      G   +     ++M  +G   D + Y       C    
Sbjct: 861 METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGK 920

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             EAL+L  + +  G       ++ LI    +  +     E   EM K   +    T   
Sbjct: 921 SLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 980

Query: 418 MIDGLFDCSKVEEACFLL 435
           ++ G +     +EA  +L
Sbjct: 981 LLLGFYKSGNEDEASKVL 998



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 16/218 (7%)

Query: 172  KTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL-----GMQTLEEM 225
            K+   ++A N L+D+ CK G +++  E     V  K+ PN  TY IL       + +EE 
Sbjct: 795  KSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEA 854

Query: 226  IQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
             Q+          P+  TY + + ++ +     +   LF+ M  +G       A  Y +M
Sbjct: 855  EQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACD---AIAYGVM 911

Query: 279  IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
              A  +  +  E   LL   +  G   +   +  ++  +C   ++    + L EMG +  
Sbjct: 912  ASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEEL 971

Query: 339  PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
                 T N  L     + N DEA ++ G M  +G  P+
Sbjct: 972  SLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPT 1009


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 174/376 (46%), Gaps = 26/376 (6%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           LT DS++  +   +   K A  FF  A  ++        Y+ +I +L  +K  +    L+
Sbjct: 28  LTPDSLITTVLNCRSPWK-ALEFFNAAPEKNIQL-----YSAIIHVLVGSKLLSHARYLL 81

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET 198
             ++  + +++K   P     +   + +     K  P  N    L+  LCK  LV+ A +
Sbjct: 82  NDLVQNLVKSHK---PYHACQLAFSELSRLKSSKFTP--NVYGELIIVLCKMELVEEALS 136

Query: 199 ICKRVKNKVKPNA-----------NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
           +  +V   +   A             + +L  +  EEMI  G +P   T+ T ID  C+ 
Sbjct: 137 MYHKVGAALTIQACNVLLYVLVKTGRFELL-WRIYEEMISNGLSPSVITFGTLIDGCCRQ 195

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
             +  A ++F+ MR KG     PT   Y I+I  L  ++++EE  S+   M   G  P+V
Sbjct: 196 GDLLRAQEMFDEMRVKGIV---PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNV 252

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            TY  +++G C     ++A +  ++M  +G  PD+VT+   +  LC       A  L+  
Sbjct: 253 YTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVN 312

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           MI+    P++  YN LI  Y ++G+   A   + E+++   + DV TY ++I GL   S+
Sbjct: 313 MIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSR 372

Query: 428 VEEACFLLEEVVNKGL 443
            EEA  + E++  +G+
Sbjct: 373 TEEAGNIFEKMTKEGI 388



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P +    +L+  LC    ++ AE++ + ++   V PN  TYN L             ++ 
Sbjct: 215 PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRL 274

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++M+  G  PD  T+   ID  CK   +  A +LF  M     T   P    Y  +I A
Sbjct: 275 YQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVT---PNIAVYNSLIDA 331

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + E  +L   +      PDV TY  ++ G+C   + EEA    E+M  +G   +
Sbjct: 332 YCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILAN 391

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTYN  +   C     D+AL +  +M E G  P+V T++ LI  Y ++     A   + 
Sbjct: 392 SVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYS 451

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +  + DV TY  MIDG      ++EA  L  ++++ G+
Sbjct: 452 EMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGI 493



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 27/277 (9%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           L+ Y + +     P++    +L+D LCK G +  A  +                      
Sbjct: 272 LRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL---------------------- 309

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIV 280
              MI+    P+   YN+ ID +CK   V+EA  LF E  R +     SP   TY+I+I 
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFE----VSPDVFTYSILIR 365

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    R EE  ++   M   G L +  TY  +++G C  GK+++A +   +M   G  P
Sbjct: 366 GLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEP 425

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +++T++  +   C  +N   A+ +Y  M+     P V TY  +I  + + G    A + +
Sbjct: 426 NVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLY 485

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            +M   G   +  T   ++DGL    K+ +A  L  E
Sbjct: 486 SDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTE 522



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 29/285 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           +   IK    P I   N L+DA CK G V  A  +   ++  +V P+  TY+IL      
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                      E+M + G   ++ TYN+ ID  CK   + +A ++   M   G     P 
Sbjct: 370 VSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGV---EPN 426

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T++ +I    +   ++    +   M+     PDV TY  +++G C  G ++EA K   
Sbjct: 427 VITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYS 486

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----------GCWPSVQ--- 378
           +M + G  P+  T +C L  LC +    +AL L+   IE           G  PS+    
Sbjct: 487 DMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHV 546

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
            Y  LI    + G+   A + + +M + G   D   Y VM+ GLF
Sbjct: 547 AYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLF 591



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 112/240 (46%), Gaps = 6/240 (2%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y   I   CK  +V EA  ++          ++ T +   +++  LV+  R E  + +  
Sbjct: 118 YGELIIVLCKMELVEEALSMYH------KVGAALTIQACNVLLYVLVKTGRFELLWRIYE 171

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            MI++G  P V T+  +++G C  G +  A +  +EM  KG  P ++ Y   ++ LC + 
Sbjct: 172 EMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDN 231

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +EA  ++  M EVG +P+V TYN L+  Y +L     A   + +M   G   DV T+ 
Sbjct: 232 KIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFG 291

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           ++IDGL    +++ A  L   ++   +      ++S +     +GD+     L   + +F
Sbjct: 292 ILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERF 351



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 29/252 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           + E  + +  P++   ++L+  LC     + A  I +++ K  +  N+ TYN L      
Sbjct: 345 FLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCK 404

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++   +M + G  P+  T++T ID +CK R +  A  ++  M  K     SP 
Sbjct: 405 EGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSL---SPD 461

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  MI    +   M+E   L   M+++G  P+  T   +L+G+C  GK+ +A +   
Sbjct: 462 VVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFT 521

Query: 332 EM-------------GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
           E              G+K    + V Y   +  LC +    +A++L+  M   G  P   
Sbjct: 522 EKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEV 581

Query: 379 TYNMLISMYFEL 390
            Y +++   F++
Sbjct: 582 IYVVMLRGLFQV 593


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 16/286 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K + ++   N ++D+LCK   VD A  + K ++ K ++PN  TY+ L             
Sbjct: 179 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 238

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            Q L +MI+    P+  T+N  ID F K     EA  L + M  +      P   TY  +
Sbjct: 239 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI---DPDIFTYNSL 295

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I     +DR+++   +   M++  C PD+ TY  +++G C + +VE+  +   EM ++G 
Sbjct: 296 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 355

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D VTY   ++ L  + + D A +++ +M+  G  P + TY++L+      G+ + A E
Sbjct: 356 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 415

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +  M K     D+  Y  MI+G+    KV++   L   +  KG+K
Sbjct: 416 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 461



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 25/302 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP +    ++++ LCK G +D A                 +N+L      +M       D
Sbjct: 146 QPNLVTYGVVVNGLCKRGDIDLA-----------------FNLL-----NKMEAAKIEAD 183

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              +NT ID+ CK R V +A +LF+ M TKG     P   TY+ +I  L    R  +   
Sbjct: 184 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGI---RPNVVTYSSLISCLCSYGRWSDASQ 240

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  MI     P++ T+  +++     GK  EA K  ++M  +   PDI TYN  +   C
Sbjct: 241 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 300

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            +   D+A +++  M+   C+P + TYN LI  + +    +   E + EM  RG   D  
Sbjct: 301 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 360

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY  +I GLF     + A  + +++V+ G+      +   L  L   G L    ++ D+M
Sbjct: 361 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 420

Query: 474 RK 475
           +K
Sbjct: 421 QK 422



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 146/303 (48%), Gaps = 23/303 (7%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
           VD  L + K+   K     +P +   + L+  LC  G   D ++ +   ++ K+ PN  T
Sbjct: 200 VDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +N L              +  ++MI+    PD FTYN+ I+ FC    + +A  +FEFM 
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 316

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           +K      P   TY  +I    ++ R+E+   L   M + G + D  TY  +++G+   G
Sbjct: 317 SKDCF---PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 373

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
             + A K  ++M + G PPDI+TY+  L  LC+N   ++AL ++  M +      +  Y 
Sbjct: 374 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 433

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVV 439
            +I    + G+ D  ++ +  +  +G   +V TY  MI GL  CSK  ++EA  LL+++ 
Sbjct: 434 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL--CSKRLLQEAYALLKKMK 491

Query: 440 NKG 442
             G
Sbjct: 492 EDG 494



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 120/288 (41%), Gaps = 47/288 (16%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           ++ I+ K  P +   N L+DA  K G    AE +    +K  + P+  TYN L       
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 302

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------- 264
                  Q  E M+     PD  TYNT I  FCK++ V +  +LF  M  +G        
Sbjct: 303 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 362

Query: 265 ------------------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                   S    P   TY+I++  L  N ++E+   +  +M  
Sbjct: 363 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 422

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S    D+  Y  ++EGMC AGKV++ +     +  KG  P++VTYN  +  LC  +   E
Sbjct: 423 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 482

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           A  L  +M E G  P   TYN LI  +   G+   + E   EM  R C
Sbjct: 483 AYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM--RSC 528



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 23/275 (8%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
           +K +  P I   N LL A+ K    D                     ++ +  L +M+++
Sbjct: 34  VKSRPLPSIFEFNKLLSAIAKMKKFDL--------------------VISLALLGKMMKL 73

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G+ P   T ++ ++ +C  + +++A  L + M   G     P   T+  +I  L  +++ 
Sbjct: 74  GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY---RPDTITFTTLIHGLFLHNKA 130

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E  +L+  M+  GC P++ TY  V+ G+C  G ++ A+  L +M       D+V +N  
Sbjct: 131 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 190

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC  ++ D+AL L+  M   G  P+V TY+ LIS     G    A +   +M ++  
Sbjct: 191 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 250

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             ++ T+  +ID      K  EA  L ++++ + +
Sbjct: 251 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 285



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            +LLG M+  G  P + T   +L G C   ++ +A   +++M   GY PD +T+   +  
Sbjct: 64  LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 123

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           L  +    EA+ L  RM++ GC P++ TY ++++   + G+ D AF   ++M+      D
Sbjct: 124 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 183

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLS 470
           V  +  +ID L     V++A  L +E+  KG++     + S +  L   G    A   LS
Sbjct: 184 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 243

Query: 471 DHMRKFYNP 479
           D + K  NP
Sbjct: 244 DMIEKKINP 252



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 7/254 (2%)

Query: 225 MIQMGHAPDNFTYN---TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           M++    P  F +N   +AI    K  +V   A L + M+        P+  T + ++  
Sbjct: 33  MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLG----YEPSIVTLSSLLNG 88

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                R+ +  +L+  M+  G  PD  T+  ++ G+ L  K  EA   ++ M  +G  P+
Sbjct: 89  YCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 148

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC   + D A  L  +M        V  +N +I    +    D A   + 
Sbjct: 149 LVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK 208

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM+ +G   +V TY  +I  L    +  +A  LL +++ K +      F++ +      G
Sbjct: 209 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 268

Query: 462 DLGAIHKLSDHMRK 475
                 KL D M K
Sbjct: 269 KFVEAEKLHDDMIK 282



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 16/187 (8%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  L   G  D A+ + K+ V + V P+  TY+IL             ++  + M +  
Sbjct: 365 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 424

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              D + Y T I+  CKA  V +  DLF  +  KG     P   TY  MI  L     ++
Sbjct: 425 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV---KPNVVTYNTMISGLCSKRLLQ 481

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E ++LL  M   G LPD  TY  ++      G    + + + EM +  +  D  T     
Sbjct: 482 EAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 541

Query: 350 KVLCDNK 356
            +L D +
Sbjct: 542 NMLHDGR 548


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 127/282 (45%), Gaps = 18/282 (6%)

Query: 175 PEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N+LL+A CK  G     E I         PN  TYN+L             ++ 
Sbjct: 200 PDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALEL 259

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIV 280
           L  +   G  P    YNT +   C A    +A +L  E +R        P   T+ ++I 
Sbjct: 260 LRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLREN----CPPNEATFNVVIY 315

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L +   +++   LL  M   GC  ++ TY  ++ G+C    V+ A   L +M + G  P
Sbjct: 316 SLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKP 375

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DIVTYN  LK LC      +A  L   M + GC P   T+N LI    + G    A E +
Sbjct: 376 DIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVF 435

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            +M  +GC  +  TY  +I GL   +K+++A  L  E+ +KG
Sbjct: 436 KQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 477



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTLE----------EMIQ 227
           N+L+D +C  G VD A  + + + +   KP+   YN +  G+ + E          EM++
Sbjct: 241 NVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLR 300

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P+  T+N  I + C+  ++ +A  L E M   G T +     TY  +I  L +   
Sbjct: 301 ENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN---IVTYNAIINGLCEQRN 357

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++    LL  M + GC PD+ TY  +L+G+C A +  +A + ++ M   G  PD VT+N 
Sbjct: 358 VDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNT 417

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC      +A+ ++ +M + GC P+  TY+ +IS   +  + D A E ++EM  +G
Sbjct: 418 LIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 477

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
              D   Y ++ + L D   +EEA   + ++ + G+      +++ L+ L
Sbjct: 478 FNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGL 526



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 10/308 (3%)

Query: 175 PEINALNLLLDALCKCGLVDYAETI---CKRVKNKVKPNANTYNILGMQTLEEMIQ---- 227
           P+    N L+  LC+ G  D AE +   C      V   A T        L +  +    
Sbjct: 101 PDAALANRLVRDLCRRGRPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDARRVVGG 160

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           M   P+ +TYN  I T C+   V +A  + + M  +G    +P   TY I++ A  +   
Sbjct: 161 MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGC---APDVVTYNILLEATCKGRG 217

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             +   L+  M   GC P+  TY  +++GMC  G V++A + L  + + G  P  V YN 
Sbjct: 218 YRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNT 277

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            LK LC  +   +A  L   M+   C P+  T+N++I      G    A +   +M K G
Sbjct: 278 VLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG 337

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
           C  ++ TY  +I+GL +   V+ A  LL ++ + G K     +++ L  L          
Sbjct: 338 CTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAE 397

Query: 468 KLSDHMRK 475
           +L D+M +
Sbjct: 398 ELMDNMTQ 405



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 123/270 (45%), Gaps = 17/270 (6%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------- 217
           TE ++    P     N+++ +LC+ GL+  A + + K  K+    N  TYN +       
Sbjct: 296 TEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQ 355

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 M  L +M   G  PD  TYNT +   C A    +A +L + M   G     P  
Sbjct: 356 RNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCL---PDN 412

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T+  +I  L Q   M +   +   M + GC P+  TY  ++ G+  A K+++A +   E
Sbjct: 413 VTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNE 472

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+KG+ PD + Y    + L D+   +EA++   ++ + G  P    YN ++      G+
Sbjct: 473 MGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK 531

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            + A +    M   GC  D  TY ++I+GL
Sbjct: 532 TEFAIDIMAYMVSSGCMPDDLTYVILIEGL 561


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N+L+ A   CG++D A  I   +++  VKP+  TY  +             M+ 
Sbjct: 394 PVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEK 453

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G  PD + Y+  I  FC    + +A +L   +   G  +       +  +I  
Sbjct: 454 FNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLD---IVFFGSIINN 510

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  PD   Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 511 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +   C     DE L L+  M++ G  PS   YN++I   FE G    A   +H
Sbjct: 571 VVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFH 630

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A +  TY +++ GLF     +EA FL +E+    +K+
Sbjct: 631 EMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 674



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 23/301 (7%)

Query: 164 QYTEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYN 215
           Q+ E ++V  +       P++ ALN L+ +LCK G +  A  +   +  K + P+  +Y 
Sbjct: 306 QWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYT 365

Query: 216 IL--GMQTLEEMIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           I+  G  T   ++ M          G AP   T+N  I  +    M+ +A  +F  MR  
Sbjct: 366 IMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH 425

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P   TY  +I AL +  +M++       MI+ G +PD   Y  +++G C  G +
Sbjct: 426 G---VKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +A + + E+ N G   DIV +   +  LC      +A  ++   + VG  P    YNML
Sbjct: 483 LKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNML 542

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  Y  +G+ + A   +  M   G   +V  Y  +++G     +++E   L  E++ KG+
Sbjct: 543 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI 602

Query: 444 K 444
           K
Sbjct: 603 K 603



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 33/304 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH--AP 232
           P++ + N+LL +LC  G    A+ +                      L  M + G   +P
Sbjct: 182 PDVFSYNILLKSLCNQGKSGQADDL----------------------LRMMAEGGTVCSP 219

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D   YNT ID F K   V +A DLF+ M  +G     P   TY+ ++ AL +   M++  
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG---IPPDLVTYSSVVHALCKARAMDKAE 276

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           + L  M+N G LPD  TY  ++ G    G+ +EA +  +EM  +   PD+V  N  +  L
Sbjct: 277 AFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSL 336

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C      EA  ++  M   G  P V +Y ++++ Y   G      + +  M   G A  +
Sbjct: 337 CKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVI 396

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
            T+ V+I    +C  +++A  +  E+ + G+K P+      +  ++VI  L  I K+ D 
Sbjct: 397 CTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK-PH-----VVTYMTVIAALCRIGKMDDA 450

Query: 473 MRKF 476
           M KF
Sbjct: 451 MEKF 454



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P++   + ++ ALCK   +D AE   +++ NK V P+  TYN L      
Sbjct: 244 FKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 303

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD    NT + + CK   + EA D+F+ M  KG    +P 
Sbjct: 304 TGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ---NPD 360

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  P + T+  +++     G +++A     
Sbjct: 361 VFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFN 420

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  P +VTY   +  LC     D+A+  + +MI+ G  P    Y+ LI  +   G
Sbjct: 421 EMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHG 480

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A E   E+   G   D+  +  +I+ L    +V +A  + +  VN GL
Sbjct: 481 SLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGL 532



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   D      +L+G C A
Sbjct: 102 RAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEA 161

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +YN  LK LC+     +A  L   M E G  C P V
Sbjct: 162 KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDV 221

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             YN +I  +F+ G+ + A + + EM +RG   D+ TY  ++  L     +++A   L +
Sbjct: 222 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQ 281

Query: 438 VVNKGLKLP 446
           +VNKG+ LP
Sbjct: 282 MVNKGV-LP 289



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 4/228 (1%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           L +    ++++ G   D    +  +  FC+A+   EA D+      +   +  P   +Y 
Sbjct: 131 LALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCV--PDVFSYN 188

Query: 277 IMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           I++ +L    +  +   LL  M   G  C PDV  Y  V++G    G V +A    +EM 
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
            +G PPD+VTY+  +  LC  +  D+A     +M+  G  P   TYN LI  Y   G+  
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWK 308

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            A   + EM ++    DV     ++  L    K++EA  + + +  KG
Sbjct: 309 EAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 16/242 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMG 229
           +++ LCK G V  A+ I     N  + P+A  YN+L             ++  + M+  G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+   Y T ++ +CK   + E   LF  M  KG     P+   Y I+I  L +  R  
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI---KPSTILYNIIIDGLFEAGRTV 623

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
                   M  SG   +  TY  VL G+      +EA    +E+       DI+T N  +
Sbjct: 624 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 683

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             +   +  +EA  L+  +   G  P   TY+++I+   + G  + A + +  M   GC 
Sbjct: 684 AGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 743

Query: 410 QD 411
            D
Sbjct: 744 PD 745



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V   P+    N+L+D  C  G ++ A  +    V   ++PN   Y  L          
Sbjct: 528 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI 587

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G+    EM+Q G  P    YN  ID   +A     A   F  M   G  ++  T   Y
Sbjct: 588 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT---Y 644

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I++  L +N   +E   L   +       D+ T   ++ GM    +VEEA      +  
Sbjct: 645 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 704

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P  VTY+  +  L      +EA  ++  M   GC P  +  N ++    +  E   
Sbjct: 705 SGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVR 764

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     ++D+R  + +  T  +++D
Sbjct: 765 AGAYLSKIDERNFSLEHLTAMLLVD 789


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 16/286 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K + ++   N ++D+LCK   VD A  + K ++ K ++PN  TY+ L             
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            Q L +MI+    P+  T+N  ID F K     EA  L + M  +      P   TY  +
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI---DPDIFTYNSL 296

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I     +DR+++   +   M++  C PD+ TY  +++G C + +VE+  +   EM ++G 
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D VTY   ++ L  + + D A +++ +M+  G  P + TY++L+      G+ + A E
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 416

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +  M K     D+  Y  MI+G+    KV++   L   +  KG+K
Sbjct: 417 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 462



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 25/302 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP +    ++++ LCK G +D A                 +N+L      +M       D
Sbjct: 147 QPNLVTYGVVVNGLCKRGDIDLA-----------------FNLL-----NKMEAAKIEAD 184

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              +NT ID+ CK R V +A +LF+ M TKG     P   TY+ +I  L    R  +   
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGI---RPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  MI     P++ T+  +++     GK  EA K  ++M  +   PDI TYN  +   C
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 301

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            +   D+A +++  M+   C+P + TYN LI  + +    +   E + EM  RG   D  
Sbjct: 302 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           TY  +I GLF     + A  + +++V+ G+      +   L  L   G L    ++ D+M
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421

Query: 474 RK 475
           +K
Sbjct: 422 QK 423



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 146/303 (48%), Gaps = 23/303 (7%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
           VD  L + K+   K     +P +   + L+  LC  G   D ++ +   ++ K+ PN  T
Sbjct: 201 VDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           +N L              +  ++MI+    PD FTYN+ I+ FC    + +A  +FEFM 
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 317

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           +K      P   TY  +I    ++ R+E+   L   M + G + D  TY  +++G+   G
Sbjct: 318 SKDCF---PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 374

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
             + A K  ++M + G PPDI+TY+  L  LC+N   ++AL ++  M +      +  Y 
Sbjct: 375 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 434

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVV 439
            +I    + G+ D  ++ +  +  +G   +V TY  MI GL  CSK  ++EA  LL+++ 
Sbjct: 435 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL--CSKRLLQEAYALLKKMK 492

Query: 440 NKG 442
             G
Sbjct: 493 EDG 495



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 120/288 (41%), Gaps = 47/288 (16%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
           ++ I+ K  P +   N L+DA  K G    AE +    +K  + P+  TYN L       
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------- 264
                  Q  E M+     PD  TYNT I  FCK++ V +  +LF  M  +G        
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363

Query: 265 ------------------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                   S    P   TY+I++  L  N ++E+   +  +M  
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S    D+  Y  ++EGMC AGKV++ +     +  KG  P++VTYN  +  LC  +   E
Sbjct: 424 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 483

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           A  L  +M E G  P   TYN LI  +   G+   + E   EM  R C
Sbjct: 484 AYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM--RSC 529



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 16/288 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           +K +  P I   N LL A+ K    D   ++ ++++   +  N  TYNIL          
Sbjct: 2   VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  L +M+++G+ P   T ++ ++ +C  + +++A  L + M   G     P   T+
Sbjct: 62  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY---RPDTITF 118

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L  +++  E  +L+  M+  GC P++ TY  V+ G+C  G ++ A+  L +M  
Sbjct: 119 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA 178

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
                D+V +N  +  LC  ++ D+AL L+  M   G  P+V TY+ LIS     G    
Sbjct: 179 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 238

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A +   +M ++    ++ T+  +ID      K  EA  L ++++ + +
Sbjct: 239 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 4/256 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M++    P  F +N  +    K +       L E M+  G    S    TY I+I    +
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGI---SHNLYTYNILINCFCR 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             ++    +LLG M+  G  P + T   +L G C   ++ +A   +++M   GY PD +T
Sbjct: 58  RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           +   +  L  +    EA+ L  RM++ GC P++ TY ++++   + G+ D AF   ++M+
Sbjct: 118 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
                 DV  +  +ID L     V++A  L +E+  KG++     + S +  L   G   
Sbjct: 178 AAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWS 237

Query: 465 -AIHKLSDHMRKFYNP 479
            A   LSD + K  NP
Sbjct: 238 DASQLLSDMIEKKINP 253



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 3/253 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M ++G + + +TYN  I+ FC+   ++ A  L   M   G     P+  T + ++   
Sbjct: 34  EKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGY---EPSIVTLSSLLNGY 90

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               R+ +  +L+  M+  G  PD  T+  ++ G+ L  K  EA   ++ M  +G  P++
Sbjct: 91  CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 150

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   + D A  L  +M        V  +N +I    +    D A   + E
Sbjct: 151 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 210

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   +V TY  +I  L    +  +A  LL +++ K +      F++ +      G 
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270

Query: 463 LGAIHKLSDHMRK 475
                KL D M K
Sbjct: 271 FVEAEKLHDDMIK 283



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 16/187 (8%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  L   G  D A+ + K+ V + V P+  TY+IL             ++  + M +  
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              D + Y T I+  CKA  V +  DLF  +  KG     P   TY  MI  L     ++
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV---KPNVVTYNTMISGLCSKRLLQ 482

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E ++LL  M   G LPD  TY  ++      G    + + + EM +  +  D  T     
Sbjct: 483 EAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 542

Query: 350 KVLCDNK 356
            +L D +
Sbjct: 543 NMLHDGR 549


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 16/277 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN-ILG-----------MQTLEEMIQ 227
           N L+DALCK   +  +  + + + +++++P   TYN I G           ++ L EM  
Sbjct: 494 NNLIDALCKSDRLKESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRG 553

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            GH P        +   CK     EA++    M  +G     P   +Y+  +  LV+ ++
Sbjct: 554 HGHEPWIKHSTLLVKQLCKNGRAIEASNFLADMVCEGFL---PDIVSYSAAMDGLVKINK 610

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++    L   +   GC PDV ++  +++G C AGKV EAY FL +M   G  P  V+YN 
Sbjct: 611 LDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNL 670

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C N + D+A+    +M E    P++ +Y  LI+     G PD A   W+EM ++G
Sbjct: 671 LINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKG 730

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           C+ +  TY  ++ GL  C K +EA      +  K +K
Sbjct: 731 CSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMK 767



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 18/281 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVD---YAETICKRVK-NKVKPNANTYNILGMQTLEEMIQ 227
           K    I A N L D +C+  L D   Y+  +   VK NK+           ++  +++  
Sbjct: 572 KNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDR--------ALELFQDICT 623

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD  ++N  I  +CKA  V EA +    MR  G     P+A +Y ++I    +N  
Sbjct: 624 RGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLV---PSAVSYNLLINEWCKNGD 680

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +++    L  M      P + +Y  ++ G C +G+ ++A     EM  KG  P+ +TY  
Sbjct: 681 IDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMA 740

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC     DEAL  Y  M E    P       LI  +        AF    E  ++G
Sbjct: 741 IVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKG 800

Query: 408 CAQDV--DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
              D     Y  + D +F  SK E+    ++ ++ KG ++P
Sbjct: 801 NIPDPTDKNYVTIKDAIFKLSKDEQTGLEVKALIEKG-RIP 840



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 3/178 (1%)

Query: 270 PTAKTYAIMIVALVQNDR---MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           P   ++ I+I  L++       +   SL   M+  GC  D   Y  +++ +C + +++E+
Sbjct: 450 PNTASFNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKES 509

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
           YK L +M      P   TYN     LC  ++   A+ L   M   G  P ++   +L+  
Sbjct: 510 YKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQ 569

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + G    A     +M   G   D+ +Y   +DGL   +K++ A  L +++  +G +
Sbjct: 570 LCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCR 627



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 61/362 (16%)

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           KIA  FF WA  Q  Y H    +N +  ILS  +  A    +   +L++           
Sbjct: 103 KIAHMFFTWASKQHGYRHNCNTFNAIASILSHARKNAPLRAVAMDVLNF----------- 151

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANT 213
                         +    P   AL + L  L   GLV+ A  +  +V++     PN  +
Sbjct: 152 --------------RCSMTPR--ALGVFLRCLGSVGLVEEANYLFDQVRSMDLCIPNNYS 195

Query: 214 YNIL--------GMQTLE----EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L         + ++E    EM   G   D +T    +  +C A    +A  +F  M 
Sbjct: 196 YNCLLEILSKTNSIDSIENRLMEMKDFGWEVDKYTLTPVLMAYCNAGKFDKALIVFNDMH 255

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +G          ++I+ +A  +   ++     +  M +   + +  T+  ++ G     
Sbjct: 256 ERGWV----DGYVFSILALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALIHGFVKES 311

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           + + A K LE+M   G+  D+  Y+  +  LC  +  ++A+ L+ +M  +G  P VQ   
Sbjct: 312 REDMALKLLEKMLKLGFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILA 371

Query: 382 MLISMYFE-------LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
            L++   E       LGE         +++  G    +  +  ++  L +  KVE  C+L
Sbjct: 372 KLVASSPEERVVIMLLGERP------KDINDEGM---IFLFNSVLKFLVNAGKVESTCYL 422

Query: 435 LE 436
           L+
Sbjct: 423 LQ 424


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 183/438 (41%), Gaps = 26/438 (5%)

Query: 54  LYEAIIDNSNAYDNMEKALDSLGVPLTTDSV-VGVLQRFQFEEKIAFRFFMWAGHQDNYA 112
           +++ I +   A+       D  G  +T   + + VL   +   ++A RFF W   Q ++ 
Sbjct: 57  IFDTIKEKPWAFCKNNWVSDQFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFK 116

Query: 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL----MILKQYTEK 168
                +  ++DIL         + ++  ++ +     ++   VDVL+      L  + + 
Sbjct: 117 ESEFVFCAILDILVGNDLMHAAYWVMERVVSF-----EMHGVVDVLIAGHVXCLLVFDKM 171

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           I+    P++   N +L  L    L+  A+ +   ++   +KP   TYN +          
Sbjct: 172 IRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRV 231

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L EM + G  P++ TYN  ++   K   + +A  L E M   G  +S   A TY
Sbjct: 232 DQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS---AYTY 288

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I    Q     E F L+  M+N    P +STY  ++ G+C   +V        +M  
Sbjct: 289 NPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLK 348

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
             + PDIV++N  L   C      EA  L+  +      P+V TYN LI      G  D 
Sbjct: 349 SKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDA 408

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A     EM  +G   D+ TY ++++G F    V  A     E+++KGLK     +++ ++
Sbjct: 409 ALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIV 468

Query: 456 QLSVIGDLGAIHKLSDHM 473
               I D      + + M
Sbjct: 469 GEMKIADTSVAFSMQEEM 486



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N L+  LC  G +D A  + K + ++ + P+  TY IL                
Sbjct: 388 PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGF 447

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+  G  PD F YNT I    K    + A  + E M   G     P   TY + + A
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGF---PPDVITYNVFVHA 504

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q    EE   LL +M++ G +PD  TY  ++ G    G + +A +   EM +KG  P 
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +      +  D A   + +M+E     +V TYN +I+        D A++ + 
Sbjct: 565 VVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFD 624

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM+++G   +  +Y ++I+   +    EEA  L  E++++ ++
Sbjct: 625 EMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQ 667



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 16/261 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQTL--------- 222
           P+I    +L++   K G V  A      + +K +KP+   YN  I+G   +         
Sbjct: 423 PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSM 482

Query: 223 -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM+  G  PD  TYN  +   C+     EA DL E M + G     P   TY  +I  
Sbjct: 483 QEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLI---PDHVTYTSIING 539

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            V+N  + +   +   M++ G  P V TY  ++        ++ A+ +  +M  K  P +
Sbjct: 540 FVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN 599

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  LC  +  DEA + +  M E G  P+  +Y +LI+    +G  + A   + 
Sbjct: 600 VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYR 659

Query: 402 EMDKRGCAQDVDTYCVMIDGL 422
           EM  R    D  T+ V +  L
Sbjct: 660 EMLDRKIQPDSFTHSVFLKNL 680



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 123/287 (42%), Gaps = 51/287 (17%)

Query: 181 NLLLDALCKCGL-VDYAETICKRVKNKVKPNANTYNIL-----------GMQ-TLEEMIQ 227
           N L++  C+ GL V+  + + + V  +  P  +TYN L           G++    +M++
Sbjct: 289 NPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLK 348

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  ++N+ +  +C+   ++EA  LF+ ++ +      PT  TY  +I  L     
Sbjct: 349 SKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLV---PTVITYNTLIHGLCMWGY 405

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG---------- 337
           ++    L   M + G  PD+ TY  ++ G    G V  A  F  EM +KG          
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 338 -------------------------YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
                                    +PPD++TYN F+  LC   N +EA  L   M+  G
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
             P   TY  +I+ + + G    A E ++EM  +G A  V TY V+I
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 3/262 (1%)

Query: 212 NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           N  NI     + E+++    PD F YN  I  FCK   +  A  +   M+ +G     P 
Sbjct: 115 NFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFL---PD 171

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY IMI +L    ++     +L  ++   C+P V TY  ++E   + G + EA K LE
Sbjct: 172 IVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLE 231

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G  PD+ TYN  ++ +C     + A  L   +   GC P V +YN+L+  +   G
Sbjct: 232 EMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQG 291

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + D   +   EM  RGC  +  TY ++I  L    +++EA  +L+ ++ K L      +D
Sbjct: 292 KWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYD 351

Query: 452 SYLMQLSVIGDLGAIHKLSDHM 473
             +  L   G L     + D+M
Sbjct: 352 PLISALCKEGRLDLAIGIMDYM 373



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 169/374 (45%), Gaps = 35/374 (9%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI------------LK 163
           + YN+MI  L + +    +  L   +LD +  +N +   +   ++I            +K
Sbjct: 173 VTYNIMIGSLCNRR----KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMK 228

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----- 217
              E +     P++   N ++  +CK G+V+ A E I        KP+  +YNIL     
Sbjct: 229 LLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFL 288

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                  G + + EM   G  P+  TY+  I + C+   + EA  + + M  K  T   P
Sbjct: 289 NQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELT---P 345

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              +Y  +I AL +  R++    ++ +MI++GCLPD+  Y  +L  +C  G   +A +  
Sbjct: 346 DTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 405

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            ++   G PP++ +YN  +  L    +   AL +   MI  G  P   TYN LIS     
Sbjct: 406 NKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRD 465

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G  + A     +M++ G    V +Y +++ GL    ++++A  +  E++ KG + P    
Sbjct: 466 GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCR-PNET- 523

Query: 451 DSYLMQLSVIGDLG 464
            +Y++ +  IG  G
Sbjct: 524 -TYILLIEGIGFAG 536



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 25/313 (7%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E ++  T+P++ A N ++   CK   ++ A  +  R+K +                    
Sbjct: 127 EILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKAR-------------------- 166

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  PD  TYN  I + C  R +  A  + + +         PT  TY I+I A +   
Sbjct: 167 --GFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM---PTVITYTILIEATIVEG 221

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
            + E   LL  M+  G LPD+ TY  ++ GMC  G VE A + +  + +KG  PD+++YN
Sbjct: 222 GINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYN 281

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             L+   +    DE  +L   M   GC P+  TY++LIS     G  D A      M ++
Sbjct: 282 ILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK 341

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
               D  +Y  +I  L    +++ A  +++ +++ G       +++ L  L   G+    
Sbjct: 342 ELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQA 401

Query: 467 HKLSDHMRKFYNP 479
            ++ + +R    P
Sbjct: 402 LEIFNKLRGMGCP 414



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 20/190 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+I   N +L ALCK G  + A  I  +++     PN ++YN +             +  
Sbjct: 380 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 439

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +  MI  G  PD  TYN+ I   C+  +V EA  L + M   G     PT  +Y I+++ 
Sbjct: 440 VPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF---RPTVISYNIVLLG 496

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+++   +   MI  GC P+ +TY  ++EG+  AG   EA     E+ N  +  D
Sbjct: 497 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAM----ELANSLFSRD 552

Query: 342 IVTYNCFLKV 351
           +++ + F ++
Sbjct: 553 VISQDSFKRL 562



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           ++L   C AGK  E+  FLE + NKGY PD++     +K   + KN ++A R+   ++E 
Sbjct: 73  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILES 131

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              P V  YN +IS + ++   + A +  + M  RG   D+ TY +MI  L +  K+  A
Sbjct: 132 HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 191

Query: 432 CFLLEEVV 439
             +L++++
Sbjct: 192 LKVLDQLL 199


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 135/320 (42%), Gaps = 16/320 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL----------- 217
           K   +P IN  N LL   CK G +D A  +   +     KPN  TY  L           
Sbjct: 429 KAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFD 488

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                L+EM Q G + +++TYN  I+  C    V E   + +   ++G     PT  TY 
Sbjct: 489 NAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFI---PTMMTYN 545

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I   V+   M   F++   M   G  P++ TY   ++G C  G  + A K L ++  +
Sbjct: 546 SIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRR 605

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PDIV YN  +   C   N   AL+L   +++ G  P+   YN LI+ Y  L      
Sbjct: 606 GLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEV 665

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            + +  M K G   D  TY  +IDG      V  A  L  E++ KG       F +    
Sbjct: 666 SKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHG 725

Query: 457 LSVIGDLGAIHKLSDHMRKF 476
           L   GD+    KL + MR+ 
Sbjct: 726 LCRSGDIDGAKKLLEEMRRL 745



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 16/262 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI------------LGMQT 221
           P +   N +++   K G++  A T+ ++++ K + PN  TY              + ++ 
Sbjct: 539 PTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKM 598

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L ++ + G  PD   YN  I+ FC+   ++ A  L   +   G    +P    Y  +I  
Sbjct: 599 LNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGL---APNTVVYNSLITG 655

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
               + M+E       MI  G + D STY  +++G    G V  A +   EM  KGY PD
Sbjct: 656 YKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPD 715

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+      LC + + D A +L   M  +   P+V  YNMLI+ Y    +   AF    
Sbjct: 716 AFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHD 775

Query: 402 EMDKRGCAQDVDTYCVMIDGLF 423
           EM   G   D  TY +++   F
Sbjct: 776 EMLNMGIQPDDTTYDILVSKKF 797



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 4/257 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +   +E ++ G  P    Y   I    +  M  +A +L   M  +G     P+    +++
Sbjct: 317 LNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLL---PSTFELSLV 373

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +  L+ + R ++   L   M +SG LPDV TY  ++   C A K+ EA    + M   G 
Sbjct: 374 LKGLLNDRRWKDAVCLFEEMADSG-LPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGV 432

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P I TYN  L   C     DEA++LY  M   G  P+V TY  L+  Y    + D A+ 
Sbjct: 433 KPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYA 492

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              EM + G + +  TY V+I+G+    +V E   +L+  +++G       ++S +    
Sbjct: 493 LLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFV 552

Query: 459 VIGDLGAIHKLSDHMRK 475
             G +G+   +   MR+
Sbjct: 553 KAGMMGSAFTVYQQMRE 569



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 3/222 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M + G  P+  TY + ID +C+      A  +   +R +G     P    Y  +I   
Sbjct: 565 QQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGL---QPDIVAYNALINGF 621

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            Q   M     LL  ++  G  P+   Y  ++ G      ++E  KF E M   G   D 
Sbjct: 622 CQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADT 681

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            TY   +     + N   AL LY  M+  G  P   T+  L       G+ DGA +   E
Sbjct: 682 STYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEE 741

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           M +     +V  Y ++I+G     K++EA  L +E++N G++
Sbjct: 742 MRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQ 783



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 3/220 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G+  D + ++  +    K  M  +A  LF+ M   G+ I  P  + YA+ I AL 
Sbjct: 182 EMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEM--PGAEID-PDQRVYALAITALC 238

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +         +L  M   G      TY+ +++ +   G++EEA +  +EM + G   D++
Sbjct: 239 KLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVI 298

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
                ++  C  +    AL L+   ++ G  P+   Y +LI    ++G    A+E   +M
Sbjct: 299 VATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQM 358

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +G         +++ GL +  + ++A  L EE+ + GL
Sbjct: 359 TGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL 398



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%)

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           HM+  G +PD+ +  ++L         ++A     EM  +GY  D   ++  +       
Sbjct: 147 HMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEG 206

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A+RL+  M      P  + Y + I+   +LG+   A     EM + G      TY 
Sbjct: 207 MHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYR 266

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            M+D L    ++EEA  + +E+ + G K+
Sbjct: 267 TMVDVLVKTGRMEEALRVNDEMRDAGKKM 295


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P     N L+D  C  G +D A      + N+ +  +  TYN+L                
Sbjct: 320 PNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDM 379

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           ++EM + G  PD  TYN  I+ +C+     +A  LF+ M  K      PT +TY  +I  
Sbjct: 380 IKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNI---RPTVETYTSLIDV 436

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + +RM E        I  G LPD+  +  +++G C+ G ++ A++ L+EM N    PD
Sbjct: 437 FGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPD 496

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+N  ++  C  +  +EA +L   M E G  P   +YN LIS Y + G+   A E + 
Sbjct: 497 EVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFD 556

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM   G    + TY  +I G     + + A  LL E+ +KG+
Sbjct: 557 EMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGI 598



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 162/379 (42%), Gaps = 52/379 (13%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------ 217
           Y E +K+  +  I   N++++ LC+ G    A+     ++   VKPN  TYN +      
Sbjct: 205 YEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCL 264

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +  + M      PD +TYN+ I   CK R + EA+ +   +   G     P 
Sbjct: 265 RGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLV---PN 321

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           A TY  +I        +++ F+    M+N G +  V TY  ++  + L  ++EEA   ++
Sbjct: 322 AVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIK 381

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL- 390
           EM  KG  PD+VTYN  +   C   N  +AL L+  M+E    P+V+TY  LI ++ +  
Sbjct: 382 EMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRN 441

Query: 391 ----------------------------------GEPDGAFETWHEMDKRGCAQDVDTYC 416
                                             G  D AF+   EMD      D  T+ 
Sbjct: 442 RMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFN 501

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            ++ G     KVEEA  LL+E+  +G+K  +  +++ +   S  GD+    ++ D M   
Sbjct: 502 TLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSL 561

Query: 477 -YNPVIARRLALNQKRVRI 494
            ++P +    AL Q   +I
Sbjct: 562 GFDPTLLTYNALIQGYSKI 580



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 16/255 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           NLL+ AL     ++ AE + K ++ K V+P+  TYNI              +   +EM++
Sbjct: 361 NLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVE 420

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P   TY + ID F K   ++EA + F+    +G     P    +  +I     N  
Sbjct: 421 KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGML---PDIIMFNALIDGHCVNGN 477

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++  F LL  M N+  +PD  T+  +++G C   KVEEA K L+EM  +G  PD ++YN 
Sbjct: 478 IDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNT 537

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +       +  +AL ++  M+ +G  P++ TYN LI  Y ++GE D A E   EM  +G
Sbjct: 538 LISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKG 597

Query: 408 CAQDVDTYCVMIDGL 422
              D  TY  +I+ +
Sbjct: 598 ITPDDSTYLYVIEAM 612



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 134/314 (42%), Gaps = 16/314 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAE-TICKRVKNKVKPNANTYNIL------------GMQ 220
           +P+    N  +  LCK   ++ A   +CK +++ + PNA TYN L               
Sbjct: 284 KPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFA 343

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             +EM+  G     FTYN  I      + + EA D+ + MR KG     P   TY I I 
Sbjct: 344 YRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGV---EPDVVTYNIQIN 400

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +    ++  SL   M+     P V TY  +++      ++ EA +  ++   +G  P
Sbjct: 401 GYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLP 460

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI+ +N  +   C N N D A +L   M      P   T+N L+  Y    + + A +  
Sbjct: 461 DIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLL 520

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM +RG   D  +Y  +I G      +++A  + +E+++ G       +++ +   S I
Sbjct: 521 DEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKI 580

Query: 461 GDLGAIHKLSDHMR 474
           G+     +L   M+
Sbjct: 581 GEADHAEELLREMQ 594



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 25/183 (13%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           +++ + IK    P+I   N L+D  C  G +D A                       Q L
Sbjct: 448 EKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRA----------------------FQLL 485

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +EM      PD  T+NT +  +C+ R V EA  L + M+ +G     P   +Y  +I   
Sbjct: 486 KEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI---KPDHISYNTLISGY 542

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   M++   +   M++ G  P + TY  +++G    G+ + A + L EM +KG  PD 
Sbjct: 543 SKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDD 602

Query: 343 VTY 345
            TY
Sbjct: 603 STY 605



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
            T    +F  +    + ++  T   + +++ A  Q  + +E    L  M  +  +P   T
Sbjct: 125 TTTPTVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTET 184

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
              +L  +    K++ A+   EEM        IVT+N  + +LC      +A    G M 
Sbjct: 185 CNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHME 244

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G  P+V TYN +I+ Y   G+ + A + +  M  +    D  TY   I  L    ++E
Sbjct: 245 VYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIE 304

Query: 430 EACFLLEEVVNKGL 443
           EA  +L +++  GL
Sbjct: 305 EASGVLCKLLESGL 318



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D    +LK   E    K  P+    N L+   C+   V+ A+ +   +K + +KP+  +
Sbjct: 478 IDRAFQLLK---EMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHIS 534

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L             ++  +EM+ +G  P   TYN  I  + K      A +L   M+
Sbjct: 535 YNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQ 594

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +KG T   P   TY  +I A+  ND + E
Sbjct: 595 SKGIT---PDDSTYLYVIEAMKTNDDLVE 620


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 184/422 (43%), Gaps = 36/422 (8%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           +I+       ++ +L  L   L+  +V+  LQ  +   K A  FF W      + H   +
Sbjct: 72  LINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAK-ALHFFRWV-EAKGFTHNEQS 129

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLD----YMKRNNKVFVPVDVLLMILKQYTEKIKV-K 172
           Y LMI+IL  ++        V S+       +K  ++ F  +         + E IKV K
Sbjct: 130 YFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFK 189

Query: 173 TQPEIN------ALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------- 217
           T  EI         N LL  + K G    A+ +   + +   V P+  T+NIL       
Sbjct: 190 TMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMN 249

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                G    +EM +    PD  TYNT +D  C+A  V  A ++ + M  K   +S P  
Sbjct: 250 SMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLS-PNV 308

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I        M E  SLL  M++ G  P+  TY  +++G+C A K+++  + LE 
Sbjct: 309 VTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEG 368

Query: 333 M-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           M G+ G+ PD  T N  +K  C     +EA  ++ +M E+   P   TY++L+    + G
Sbjct: 369 MVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 428

Query: 392 EPDGAFETWHEMDKR-------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   A E + E+ ++       GC   V  Y  M + L    K ++A  +  +++ +G +
Sbjct: 429 DFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ 488

Query: 445 LP 446
            P
Sbjct: 489 DP 490



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 127/323 (39%), Gaps = 58/323 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+   LN L+ A C  G ++ A ++ +++   +V+P++ TY++L              + 
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 436

Query: 222 LEEMIQ-------MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
            +E+ +       +G  P    YN   +  C      +A  +F  +  +G T   P+ KT
Sbjct: 437 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKT 495

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
              +I+   +    E  F LL  M+    +PD  TY  +++G+   G    A+K LE+M 
Sbjct: 496 ---LILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
              + P    ++  L  L +     E+  L   M+E     ++      + + ++ G  D
Sbjct: 553 KSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQD 612

Query: 395 GAFET---------------------------------WHEMDKRGCAQDVDTYCVMIDG 421
            AF T                                    ++KR    D+D    +I G
Sbjct: 613 KAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSV-DIDMCSTVISG 671

Query: 422 LFDCSKVEEACFLLEEVVNKGLK 444
           L    KV EA  L  E+V KG++
Sbjct: 672 LCKAHKVSEAFALYYELVEKGMQ 694


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 184/422 (43%), Gaps = 36/422 (8%)

Query: 58  IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
           +I+       ++ +L  L   L+  +V+  LQ  +   K A  FF W      + H   +
Sbjct: 72  LINTEPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAK-ALHFFRWV-EAKGFTHNEQS 129

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLD----YMKRNNKVFVPVDVLLMILKQYTEKIKV-K 172
           Y LMI+IL  ++        V S+       +K  ++ F  +         + E IKV K
Sbjct: 130 YFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFK 189

Query: 173 T------QPEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------- 217
           T       P +   N LL  + K G    A+ +   + +   V P+  T+NIL       
Sbjct: 190 TMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMN 249

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                G    +EM +    PD  TYNT +D  C+A  V  A ++ + M  K   +S P  
Sbjct: 250 SMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLS-PNV 308

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I        M E  SLL  M++ G  P+  TY  +++G+C A K+++  + LE 
Sbjct: 309 VTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEG 368

Query: 333 M-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           M G+ G+ PD  T N  +K  C     +EA  ++ +M E+   P   TY++L+    + G
Sbjct: 369 MVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 428

Query: 392 EPDGAFETWHEMDKR-------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   A E + E+ ++       GC   V  Y  M + L    K ++A  +  +++ +G +
Sbjct: 429 DFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ 488

Query: 445 LP 446
            P
Sbjct: 489 DP 490



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 124/298 (41%), Gaps = 36/298 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P+   LN L+ A C  G ++ A ++ +++   +V+P++ TY++L              + 
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 436

Query: 222 LEEMIQ-------MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
            +E+ +       +G  P    YN   +  C      +A  +F  +  +G T   P+ KT
Sbjct: 437 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKT 495

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
              +I+   +    E  F LL  M+    +PD  TY  +++G+   G    A+K LE+M 
Sbjct: 496 ---LILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP----SVQTYNMLISMYFEL 390
              + P    ++  L  L +     E+  L   M+E         S  T   L+S    L
Sbjct: 553 KSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSF---L 609

Query: 391 GEPDGAFETWH----EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +     E        ++KR    D+D    +I GL    KV EA  L  E+V KG++
Sbjct: 610 CQSRKLLEAQKMLLFSLEKRQSV-DIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQ 666


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E I  +  P +   + L+   C  G   D      + V   + P+A T+NIL      
Sbjct: 216 YSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCK 275

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     +  M++ G  P   TYNT +D +C   +V E       +        +P 
Sbjct: 276 EGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYC---LVNEVGKAKHVLSIISRMRVAPN 332

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           +++Y IMI    +   ++E   L   M   G  P   TY  +++G+C AG++  A++ ++
Sbjct: 333 SRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVD 392

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM N   P DIVTYN  + V C N++ D+A+ L  ++ E G  P++ TYN+LI    + G
Sbjct: 393 EMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGG 452

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A + + ++  +G   +  TY +MI+GL      +EA  LL ++ + G+
Sbjct: 453 QLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGI 504



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 141/296 (47%), Gaps = 18/296 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--- 217
            + + E +     P+    N+L+DALCK G +  A+  I   +K  V+P   TYN L   
Sbjct: 248 FRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L  + +M  AP++ +YN  I+ FCK +MV EA  LF  M  +G    
Sbjct: 308 YCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGI--- 364

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMCLAGKVEEAY 327
           +P   TY  +I  L +  R+   + L+  M N+ C+P D+ TY  +++  C    V++A 
Sbjct: 365 APHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN-CIPADIVTYNSLIDVFCKNQHVDKAI 423

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
             ++++   G  P++ TYN  +  LC       A  ++  ++  G   +  TYN++I+  
Sbjct: 424 ALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGL 483

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + G  D A     +M+  G   D  TY  +I  LF   + E+A  LL E+V KG+
Sbjct: 484 CKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGV 539



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 151/344 (43%), Gaps = 6/344 (1%)

Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKC 190
           + +Q R   S++++ K    +    +    +L   T+      +P++  L++L++  C  
Sbjct: 56  RMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHL 115

Query: 191 GLVDYAETI-CKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
           G + +A ++  K +K  +  N      L     + ++ +G   ++ TY   I+  CK   
Sbjct: 116 GQMTFAFSVFAKILKMGLCLNGKVNEALLFH--DHVLALGFHLNHVTYGILINGLCKMGQ 173

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
            T AA   + +R     + +     Y+ +I  L ++  + + + L   MI     P V T
Sbjct: 174 -TRAA--LQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVT 230

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           +  ++ G C+ GK ++A++   EM  K   PD  T+N  +  LC      EA  +   M+
Sbjct: 231 FSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMM 290

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           + G  P+V TYN L+  Y  + E   A      + +   A +  +Y +MI+G      V+
Sbjct: 291 KEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVD 350

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           EA  L  E+  +G+      ++S +  L   G +    +L D M
Sbjct: 351 EALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEM 394



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 16/276 (5%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQM 228
           +L++ LCK G    A  + ++++ K V  N   Y+ +                  EMI  
Sbjct: 163 ILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVK 222

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
              P   T+++ I  FC      +A  LF  M  K     +P A T+ I++ AL +  ++
Sbjct: 223 RIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNI---NPDAYTFNILVDALCKEGKI 279

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +E  +++  M+  G  P V TY  +++G CL  +V +A   L  +      P+  +YN  
Sbjct: 280 KEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIM 339

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C  K  DEAL L+  M   G  P   TYN LI    + G    A+E   EM     
Sbjct: 340 INGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCI 399

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             D+ TY  +ID       V++A  L++++   G++
Sbjct: 400 PADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQ 435


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 137/306 (44%), Gaps = 25/306 (8%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
           I    QP+I   N+L+  LCK G + +A  +                      + EM + 
Sbjct: 382 INFGFQPDIFTYNILMHGLCKEGSLSFARDL----------------------VNEMSRR 419

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+  TY   ++  CKA ++ EA  +   M  +G TI+S     Y  +I AL + +++
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVI---YNCLICALCRKEKV 476

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
               +LL  M   GC PD+ TY  ++ G+C   +++EA++    M   G   + VTYN  
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  L       +AL L   M+  GC     TYN LI  + ++G  +   E + +M   G 
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D  +  +MI+GL    KV+ A   L + +N+G       ++S L  L  +G +     
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 469 LSDHMR 474
           L D ++
Sbjct: 657 LFDRLQ 662



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 207/486 (42%), Gaps = 43/486 (8%)

Query: 23  TKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNS---NAYDNMEKALDSLGVPL 79
           TK  +S I   P  +CK+ +   D V  + +++E +       + +D     ++ LG   
Sbjct: 68  TKLRKSRILITPVQLCKLLELPLD-VPTLLEIFERVGGQKGYCHTFDVYYVFINKLGAIG 126

Query: 80  TTDSVVGVLQRFQFEEKIAFR---FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
               +  +L + + EE I FR   F +   H         A  L++D + +       F+
Sbjct: 127 KFKLIDKLLMQMK-EEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLD-MRAVYLCEPTFK 184

Query: 137 LVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
               +L+ +   N   V  +V   +L +          P +    +++ ALC    VD A
Sbjct: 185 SYDLVLEILVTGNCPQVATNVFYDMLSK-------GVSPTVFTFGIVMKALCMFNEVDSA 237

Query: 197 ETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDT 243
            ++ + + K+   PN+  Y  L             ++ LEEM  MG  PD  T+N  I  
Sbjct: 238 CSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            CK   + +A  L + M  +G     P   TY  ++  L +  ++ E   +L   I   C
Sbjct: 298 LCKVNKIHDATKLVDRMLLRG---FYPDNMTYGFLLHGLCRIGKLNEARKIL---IKIPC 351

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEE-MGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
            P+ +    ++ G  ++G+++EA  FL E M N G+ PDI TYN  +  LC   +   A 
Sbjct: 352 -PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFAR 410

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L   M   GC P+V TY +L++   + G  + A    HEM  RG   +   Y  +I  L
Sbjct: 411 DLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICAL 470

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482
               KV  A  LL E+  KG K     ++      S+I  L  + ++ +  R F+N ++ 
Sbjct: 471 CRKEKVHVALNLLSEMCTKGCKPDLFTYN------SLIYGLCKVDRIDEAFRLFHNMLLD 524

Query: 483 RRLALN 488
             +A N
Sbjct: 525 GAVANN 530



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 135/313 (43%), Gaps = 51/313 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P +    +L++ LCK GL++ A  +   +  + +  N+  YN L             + 
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM   G  PD FTYN+ I   CK   + EA  LF  M   G+  ++ T   Y  +I 
Sbjct: 482 LLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVT---YNTLIH 538

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE------------------------- 315
           AL++    ++  +L+  M+  GC  D  TY  +++                         
Sbjct: 539 ALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGA 598

Query: 316 ----------GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                     G+C  GKV+ A++FL +  N+G+ PDIVTYN  L  LC      EAL L+
Sbjct: 599 DTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF 658

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            R+   G  P   TYN  IS   + G  + A   ++   + G      T+ V++  L   
Sbjct: 659 DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQ 718

Query: 426 SKVEEACFLLEEV 438
           S  E   F+L+E+
Sbjct: 719 SNQENNFFVLDEL 731



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 40/247 (16%)

Query: 98  AFRFFMWAGHQ---DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRN 148
           AFR F    H    D      + YN +I  L       K   LV  ML      D +  N
Sbjct: 514 AFRLF----HNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 149 N--KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
              K F  V  +   L+ Y + I      +  + N++++ LCK G VD A          
Sbjct: 570 GLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNA---------- 619

Query: 207 VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                        + L + I  G  PD  TYN+ ++  CK   + EA +LF+ ++ +G  
Sbjct: 620 ------------FEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEG-- 665

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P A TY   I    +   + +  S     I +G +P   T+  ++  +      E  
Sbjct: 666 -VRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENN 724

Query: 327 YKFLEEM 333
           +  L+E+
Sbjct: 725 FFVLDEL 731


>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
          Length = 441

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 170/398 (42%), Gaps = 25/398 (6%)

Query: 69  EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
           E+++  +  P  T S V  L     + + A  F  W     N+ H   +Y  ++ +L S 
Sbjct: 14  EQSISKISYPFYTPSHVSSLFSLNLDPQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQ 73

Query: 129 KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
           +   +  ++   M+            VD    + K  + +IK K  P+    N LL +L 
Sbjct: 74  EIPYEVPKITILMIKSCNSVRDALFVVDFCRTMRKGDSFEIKYKLTPK--CYNNLLSSLA 131

Query: 189 KCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNF 235
           + GLV+  + +  + +++ V P+  T+N L              Q +  +IQ G  PD F
Sbjct: 132 RFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYF 191

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY + I   C+ + V  A  +F+ M   G         +Y  +I  L +  +++E  SLL
Sbjct: 192 TYTSFITGHCRRKEVDAAFKVFKEMTQNGC---HRNEVSYTQLIYGLFEAKKIDEALSLL 248

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M +  C P+V TY  +++ +C +G+  EA    ++M   G  PD   Y   ++  C  
Sbjct: 249 VKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSG 308

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              DEA  L   M+E G  P+V TYN LI  + +      A     +M ++    D+ TY
Sbjct: 309 DTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITY 367

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             +I G   CS    +   L E +  GL   Y K   Y
Sbjct: 368 NTLIAG--QCS----SGISLSEKICNGLLRCYYKLQKY 399



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 7/230 (3%)

Query: 250 VTEAADLFEFMRT--KGSTIS---SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           V +A  + +F RT  KG +       T K Y  ++ +L +   +EE   L   M+     
Sbjct: 93  VRDALFVVDFCRTMRKGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVS 152

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PD+ T+  ++ G C  G V EA +++  +   G  PD  TY  F+   C  K  D A ++
Sbjct: 153 PDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKV 212

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M + GC  +  +Y  LI   FE  + D A     +M    C  +V TY V+ID L  
Sbjct: 213 FKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCG 272

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHM 473
             +  EA  L +++   G+K P     + L+Q    GD L     L +HM
Sbjct: 273 SGQKSEAMNLFKQMSESGIK-PDDCMYTVLIQSFCSGDTLDEASGLLEHM 321


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 157/360 (43%), Gaps = 46/360 (12%)

Query: 97  IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
           I+ RFF W   Q  ++ +  + N++ D L     +A       S LD    N        
Sbjct: 142 ISLRFFHWLSSQSGFSPDSSSCNVLFDAL----VEAGACNAAKSFLDSTNFN-------- 189

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
                             P+  +L   +  LCK GLV+ A ++  ++K   V  +  T+N
Sbjct: 190 ------------------PKPASLEAYIRCLCKGGLVEEAISVFGQLKGIGVCASIATWN 231

Query: 216 ILGMQTLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            +   ++             EM++     D  T    +  FC    +++  +L   +   
Sbjct: 232 SVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLED 291

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G     P    +  +I    ++        LL  MI     PD+ TY+EV+ G+C  GK 
Sbjct: 292 GVV---PRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKG 348

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            E ++  +++ ++GY PD V Y   +  LC  K   +A +L+  MI+ G  P+  TYN +
Sbjct: 349 PEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAM 408

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I  YF++G  + A++ + EM  +G  +   +Y VMI GL    K++EA  L EE+ +KG+
Sbjct: 409 IHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGI 468



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 3/246 (1%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G +  +++   G+APD   Y T I   C+ + + +A  L+  M  KG     P   TY  
Sbjct: 351 GFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFL---PNEYTYNA 407

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           MI    +   +EE + +   M + G      +Y  +++G+C  GK++EA+   EEM +KG
Sbjct: 408 MIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKG 467

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              + +TYN  ++  C      E   L   +++ G  PS  +Y  LI    + G+   A 
Sbjct: 468 ILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAK 527

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
             W +M  RG    V T+  MI G        E    L  ++   L+   + F+S +  L
Sbjct: 528 ILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCL 587

Query: 458 SVIGDL 463
           S I  L
Sbjct: 588 SQIDRL 593



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 3/164 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM   G   ++ TYN  +  FCK   + E A+L   +  +G     P+A +YA +I  
Sbjct: 460 FEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGI---QPSAASYAPLIDK 516

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q   M+    L   M N G  P V T+  ++ G C  G   E  ++L  M      P 
Sbjct: 517 LCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQ 576

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
             ++   ++ L      D+AL +   M+++G   S+   N L++
Sbjct: 577 KKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRLSISICNSLVT 620


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 127/284 (44%), Gaps = 18/284 (6%)

Query: 175 PEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N+LL+A CK  G     E I         PN  TYN+L             ++ 
Sbjct: 40  PDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALEL 99

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIV 280
           L  +   G  P    YNT +   C A    +A +L  E +R        P   T+ ++I 
Sbjct: 100 LRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLREN----CPPNEATFNVVIY 155

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L +   +++   LL  M   GC  ++ TY  ++ G+C    V+ A   L +M + G  P
Sbjct: 156 SLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKP 215

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DIVTYN  LK LC      +A  L   M + GC P   T+N LI    + G    A E +
Sbjct: 216 DIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVF 275

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +M  +GC  +  TY  +I GL   +K+++A  L  E+ +KG  
Sbjct: 276 KQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFN 319



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 15/248 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           V+PNA TYN L             +  L++M+  G APD  TYN  ++  CK R   +A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +L + MR +G T   P   TY +++  +     +++   LL ++ + GC P    Y  VL
Sbjct: 63  ELIDLMRAEGCT---PNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 119

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
           +G+C A +  +A + + EM  +  PP+  T+N  +  LC      +A++L  +M + GC 
Sbjct: 120 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 179

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
            ++ TYN +I+   E    DGA     +M   GC  D+ TY  ++ GL   ++  +A  L
Sbjct: 180 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEEL 239

Query: 435 LEEVVNKG 442
           ++ +   G
Sbjct: 240 MDNMTQNG 247



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GMQTLE----------EMIQ 227
           N+L+D +C  G VD A  + + +  +  KP+   YN +  G+ + E          EM++
Sbjct: 81  NVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLR 140

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P+  T+N  I + C+  ++ +A  L E M   G T +     TY  +I  L +   
Sbjct: 141 ENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN---IVTYNAIINGLCEQRN 197

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++    LL  M + GC PD+ TY  +L+G+C A +  +A + ++ M   G  PD VT+N 
Sbjct: 198 VDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNT 257

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC      +A+ ++ +M + GC P+  TY+ +IS   +  + D A E ++EM  +G
Sbjct: 258 LIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 317

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
              D   Y ++ + L D   +EEA   + ++ + G+      +++ L+ L
Sbjct: 318 FNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGL 366



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 3/244 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+ +TYN  I T C+   V +A  + + M  +G    +P   TY I++ A  +     + 
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGC---APDVVTYNILLEATCKGRGYRQA 61

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             L+  M   GC P+  TY  +++GMC  G V++A + L  + + G  P  V YN  LK 
Sbjct: 62  MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 121

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC  +   +A  L   M+   C P+  T+N++I      G    A +   +M K GC  +
Sbjct: 122 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN 181

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           + TY  +I+GL +   V+ A  LL ++ + G K     +++ L  L          +L D
Sbjct: 182 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMD 241

Query: 472 HMRK 475
           +M +
Sbjct: 242 NMTQ 245



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 123/270 (45%), Gaps = 17/270 (6%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------- 217
           TE ++    P     N+++ +LC+ GL+  A + + K  K+    N  TYN +       
Sbjct: 136 TEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQ 195

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 M  L +M   G  PD  TYNT +   C A    +A +L + M   G     P  
Sbjct: 196 RNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCL---PDN 252

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            T+  +I  L Q   M +   +   M + GC P+  TY  ++ G+  A K+++A +   E
Sbjct: 253 VTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNE 312

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+KG+ PD + Y    + L D+   +EA++   ++ + G  P    YN ++      G+
Sbjct: 313 MGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK 371

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            + A +    M   GC  D  TY ++I+GL
Sbjct: 372 TEFAIDIMAYMVSSGCMPDDLTYVILIEGL 401


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 33/310 (10%)

Query: 165 YTEKIKVKT--QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           Y EKIK +      + A + ++D+LCK G+V  A                      +   
Sbjct: 198 YLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEA----------------------LNLF 235

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             M   G  PD   YN+ I   C      EA  L   M  KG     P  +T+ +++   
Sbjct: 236 SGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIM---PNVQTFNVLVDNF 292

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++  +    +++G M++ G  PDV TY  V+ G CL  ++ +A K  E M +KG+ P++
Sbjct: 293 CKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNL 352

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA---FET 399
           VTY+  +   C  KN ++AL L G M+  G  P V T++ LI  + + G+P+ A   F T
Sbjct: 353 VTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCT 412

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
            HE D+     ++ T  +++DGLF C    EA  L  E+    L+L    ++  L  +  
Sbjct: 413 MHEHDQH---PNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCS 469

Query: 460 IGDLGAIHKL 469
            G L    +L
Sbjct: 470 FGKLNDAQEL 479



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 135/299 (45%), Gaps = 19/299 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------GMQTLEE- 224
           QP++ A N L+  LC  G    A T+   +  K + PN  T+N+L       GM +  + 
Sbjct: 244 QPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKT 303

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+ +G  PD  TYN+ I   C    + +A  +FE M  KG     P   TY+ +I 
Sbjct: 304 IMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFL---PNLVTYSSLIH 360

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   + +   LLG M+NSG  PDV T+  ++ G C AGK E A +    M      P
Sbjct: 361 GWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHP 420

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ T    L  L   +   EA+ L+  M ++    +V  YN+++      G+ + A E +
Sbjct: 421 NLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELF 480

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLMQ 456
             +  +G   DV  Y  MI GL     +++A  LL ++   G    +  Y  F   L+Q
Sbjct: 481 SCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQ 539



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 120/291 (41%), Gaps = 45/291 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P +   N+L+D  CK G++  A+TI    V   V+P+  TYN +             ++ 
Sbjct: 280 PNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKV 339

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------STI------ 267
            E MI  G  P+  TY++ I  +CK + + +A  L   M   G        ST+      
Sbjct: 340 FELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCK 399

Query: 268 ------------------SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                               P  +T AI++  L +     E  SL   M       +V  
Sbjct: 400 AGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVI 459

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  VL+GMC  GK+ +A +    + +KG   D+V Y   +K LC     D+A  L  +M 
Sbjct: 460 YNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKME 519

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           E GC P+  TYN+ +    +  +   + +    M  +G + D  T  ++I 
Sbjct: 520 ENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLIS 570



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 19/261 (7%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           ++ +  +G  PD +T    I+  C          +   M   G     PT  T+A +I  
Sbjct: 94  IKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGV---DPTVVTFATLING 150

Query: 282 L------VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           L       +  R  +    +GH  NS       TY  ++ G+C AG    A  +LE++  
Sbjct: 151 LCAEGNVARAARFADSLEDMGHQSNS------YTYGAIINGLCKAGDTSGAILYLEKIKG 204

Query: 336 KGYPPDIV-TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +    D+V  Y+  +  LC +    EAL L+  M   G  P +  YN LI      G   
Sbjct: 205 RNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWK 264

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFD 451
            A      M ++G   +V T+ V++D       +  A  ++  +V+ G++   + Y    
Sbjct: 265 EATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVI 324

Query: 452 SYLMQLSVIGDLGAIHKLSDH 472
           S    LS +GD   + +L  H
Sbjct: 325 SGHCLLSQMGDAVKVFELMIH 345



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 2/212 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P  K +  +   +V+        SL+ H+ + G  PDV T   ++  +C        +  
Sbjct: 69  PREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSV 128

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L  M   G  P +VT+   +  LC   N   A R    + ++G   +  TY  +I+   +
Sbjct: 129 LGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCK 188

Query: 390 LGEPDGAFETWHEMDKRGCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
            G+  GA     ++  R C  D V  Y  ++D L     V EA  L   + +KG++    
Sbjct: 189 AGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLV 248

Query: 449 KFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNP 479
            ++S +  L   G    A   L + MRK   P
Sbjct: 249 AYNSLIHGLCNFGRWKEATTLLGNMMRKGIMP 280


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 20/282 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y + + +   P+I     L+   C+ G   +  + +C+ V   + PN  T+N+L      
Sbjct: 247 YLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCR 306

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                   GM  L  M++ G  PD  T+NT I   C    V EA  LF+ +  +G     
Sbjct: 307 KGKMIEAQGMFNL--MVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGIL--- 361

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   +Y I+I+   +  R++E  SL   M     + D+  Y  +++G+C +G++  A++ 
Sbjct: 362 PDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWEL 421

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              + N G PP+++TYN  +   C  ++ D  + L+  M   G  P+V TYN+LI+ Y +
Sbjct: 422 FSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCK 481

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                 A      M  +  A D  TY  + DGL    ++ +A
Sbjct: 482 SKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDA 523



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 120/267 (44%), Gaps = 16/267 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNF 235
            + A  +LLD +C   L++    +CK  ++          I   Q L+EM      P+  
Sbjct: 179 NVAAQGMLLDEVCYGTLIN---GLCKIGRS----------IDAFQLLQEMEGQVVKPNIV 225

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            YN  ID+FCK  +  +A DL+  +   G     P   TY  +I    +  +  E   L+
Sbjct: 226 IYNMIIDSFCKDELTCKARDLYLKIVDMGI---DPDILTYTSLIRGFCRTGQWGEVKQLM 282

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+N    P+V T+  +++  C  GK+ EA      M  +G  PDIVT+N  +   C +
Sbjct: 283 CEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLH 342

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
            N  EA +L+  + E G  P V +Y +LI  Y +    D A   ++EM  +    D+  Y
Sbjct: 343 GNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLY 402

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +IDGL    ++  A  L   + N G
Sbjct: 403 SSLIDGLCKSGRISYAWELFSTINNDG 429



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 127/284 (44%), Gaps = 16/284 (5%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYN--ILGM---------- 219
            +P I   N+++D+ CK  L   A  +  K V   + P+  TY   I G           
Sbjct: 220 VKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVK 279

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q + EM+     P+ +T+N  ID FC+   + EA  +F  M  +G     P   T+  +I
Sbjct: 280 QLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQ---QPDIVTFNTLI 336

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
                +  + E   L   +   G LPDV +Y  ++ G C   +++EA     EM  K   
Sbjct: 337 SGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMV 396

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            DIV Y+  +  LC +     A  L+  +   G  P+V TYN+LI  + ++ + D   E 
Sbjct: 397 LDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIEL 456

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  M  +G    V TY ++I+G     ++ EA  LL  + +K L
Sbjct: 457 FKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNL 500



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 16/269 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------- 217
           E +     P +   N+L+DA C+ G +  A+ +    VK   +P+  T+N L        
Sbjct: 284 EMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHG 343

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  + + + G  PD ++Y   I  +CK + + EA  LF  MR K   +      
Sbjct: 344 NVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLD---IV 400

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y+ +I  L ++ R+   + L   + N G  P+V TY  +++  C    ++   +  + M
Sbjct: 401 LYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLM 460

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             KG  P ++TYN  +   C +K   EA+ L   M      P   TYN L     + G  
Sbjct: 461 CGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRI 520

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             A+E +  M   G   DV TY V++D  
Sbjct: 521 SDAWELFKVMHVGGPPVDVATYNVLLDAF 549



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 19/311 (6%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN 215
           V + +LKQ   K      P I  L++ ++  C  G + +A ++   V K   +PN  T  
Sbjct: 102 VAISLLKQMVFK---GVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLT 158

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            +             M   + +   G   D   Y T I+  CK   +  + D F+ ++  
Sbjct: 159 TVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCK---IGRSIDAFQLLQEM 215

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
              +  P    Y ++I +  +++   +   L   +++ G  PD+ TY  ++ G C  G+ 
Sbjct: 216 EGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQW 275

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            E  + + EM NK   P++ T+N  +   C      EA  ++  M++ G  P + T+N L
Sbjct: 276 GEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTL 335

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           IS +   G    A + +  + +RG   DV +Y ++I G   C +++EA  L  E+  K +
Sbjct: 336 ISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNM 395

Query: 444 KLPYRKFDSYL 454
            L    + S +
Sbjct: 396 VLDIVLYSSLI 406



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 25/171 (14%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           L+D LCK G + YA  +   + N   P                      P+  TYN  ID
Sbjct: 405 LIDGLCKSGRISYAWELFSTINNDGPP----------------------PNVITYNILID 442

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
            FCK + +    +LF+ M  KG T   PT  TY I+I    ++ R+ E  +LL  M +  
Sbjct: 443 AFCKIQDIDMGIELFKLMCGKGLT---PTVLTYNILINGYCKSKRIREAMNLLSVMQSKN 499

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
             PD  TY  + +G+C +G++ +A++  + M   G P D+ TYN  L   C
Sbjct: 500 LAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFC 550



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 3/255 (1%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           + +  L++M+  G  P  FT +  I+ +C    +  A  +   +  +G     P   T  
Sbjct: 102 VAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGY---QPNNITLT 158

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L  N  +++      ++   G L D   Y  ++ G+C  G+  +A++ L+EM  +
Sbjct: 159 TVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQ 218

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              P+IV YN  +   C ++   +A  LY +++++G  P + TY  LI  +   G+    
Sbjct: 219 VVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEV 278

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            +   EM  +    +V T+ V+ID      K+ EA  +   +V +G +     F++ +  
Sbjct: 279 KQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISG 338

Query: 457 LSVIGDLGAIHKLSD 471
             + G++    KL D
Sbjct: 339 HCLHGNVLEARKLFD 353



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 1/211 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +  +I ++V+        SLL  M+  G  P + T    +   C  G++  A+  
Sbjct: 82  PSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSV 141

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L  +  +GY P+ +T    +K LC N    +A+  +  +   G       Y  LI+   +
Sbjct: 142 LGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCK 201

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G    AF+   EM+ +    ++  Y ++ID         +A  L  ++V+ G+      
Sbjct: 202 IGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILT 261

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM-RKFYNP 479
           + S +      G  G + +L   M  K  NP
Sbjct: 262 YTSLIRGFCRTGQWGEVKQLMCEMVNKNINP 292



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 63/139 (45%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A      + N    P ++ +N  +  +   K+   A+ L  +M+  G  PS+ T ++
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            I+ Y  LGE   AF     + KRG   +  T   ++ GL    +V++A    + V  +G
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 443 LKLPYRKFDSYLMQLSVIG 461
           + L    + + +  L  IG
Sbjct: 185 MLLDEVCYGTLINGLCKIG 203



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%)

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           + +++  +L  H+IN   LP V  +  ++  +        A   L++M  KG  P I T 
Sbjct: 63  NGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTL 122

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           + ++   C       A  + G +++ G  P+  T   ++      GE   A +    +  
Sbjct: 123 SIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAA 182

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +G   D   Y  +I+GL    +  +A  LL+E+  + +K
Sbjct: 183 QGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVK 221


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 14/313 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLEEMIQM- 228
           P + A N +L AL    L      +   +++ V PN  TYNIL         LEE + + 
Sbjct: 116 PSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVV 175

Query: 229 ------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
                 G AP+  TYNT +  FC+A  +  A  +   MR +G+  + P   T+  M+  L
Sbjct: 176 GDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGN--AKPNLVTFNSMVNGL 233

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  RME    +   M+  G  PDV +Y  +L G C  G + E+     EM  +G  PD+
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VT+   +   C   N ++A+ L  +M E G   +  T+  LI  + + G  D A     E
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M K G    V  Y  +I+G     +++ A  L+ E+  K +K     + + +     +G+
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 463 LGAIHKLSDHMRK 475
           L +  +L+  M K
Sbjct: 414 LDSAFQLNQKMLK 426



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 45/308 (14%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GM 219
            +P +   N +++ LCK G ++ A  +  + V+  + P+  +YN L             +
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS----------- 268
               EM Q G  PD  T+ + I   CKA  + +A  L   MR +G  ++           
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 269 ---------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
                                 P+   Y  +I    +  RM+    L+  M      PDV
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            TY  ++ G C  G ++ A++  ++M  KG  PD +TY+  ++ LC+ K  ++A  L+  
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 458

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+++G  P   TY  LI  + + G  + A     EM ++G   DV TY V+I+GL   ++
Sbjct: 459 MLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518

Query: 428 VEEACFLL 435
            +EA  LL
Sbjct: 519 TKEAHRLL 526



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 46/281 (16%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------G 218
           + +P++   + ++   CK G +D A  + ++ +K  V P+A TY+ L             
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +  E M+Q+G  PD FTY T ID  CK   V +A  L + M  KG     P   TY+++
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL---PDVVTYSVL 509

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV---------------LEGMCLAGKV 323
           I  L ++ R +E   LL  + +   +PD   Y  +               L+G C+ G +
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 569

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +EA K  + M ++ +  D   Y+  +   C   N  +AL  + +M+  G  P+  +   L
Sbjct: 570 KEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISL 629

Query: 384 ISMYFELG---EPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           +   FE G   E D A             QD+ T C + D 
Sbjct: 630 VRGLFEEGMVVEADNAI------------QDLLTCCPLADA 658



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 35/162 (21%)

Query: 337 GYPPDI----------------------------------VTYNCFLKVLCDNKNGDEAL 362
           GY P +                                   TYN  ++ LC     +EA+
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDG 421
            + G M   GC P+  TYN L++ +   GE DGA      M + G A+ ++ T+  M++G
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           L    ++E A  + +E+V +GL      +++ L     +G L
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 274


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 21/285 (7%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN------------I 216
           K   + ++   N+++D LCK     +A  + KR++ + + P+  TYN            +
Sbjct: 287 KNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMM 346

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           L +    EM++ G  P   TY T ID +C+   + EA  +   M+  G     P+  TY+
Sbjct: 347 LAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAG---VKPSEVTYS 403

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            M+     N  + E FS+  +M   GC PDV TY+ +L G+C  G + +A +F+  + + 
Sbjct: 404 AML-----NGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHI 458

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
               D  T N  L  +C++ + DEAL L  +M+ +   P + TY +L+S +   G+   A
Sbjct: 459 PSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPA 518

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
                 M ++G   D+ TY  ++ GL    +V+ A +L +E++ K
Sbjct: 519 VILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICK 563



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 165/377 (43%), Gaps = 28/377 (7%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVDVLLMILKQY 165
           YN+MID L   K     + L    L  M+ +N            K F     +++ +  +
Sbjct: 297 YNIMIDKLCKMKRSTHAYLL----LKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIF 352

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLEE 224
            E ++   +P +     L+D  C+ G +D A  +   ++   VKP+  TY+ +   ++ E
Sbjct: 353 NEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNGSVHE 412

Query: 225 -------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
                  M + G +PD +TY   +   CK   + +A    EFM       S+   KT   
Sbjct: 413 AFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAK---EFMSCIVHIPSAIDQKTLNA 469

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +++ +  +  ++E   L   M+    +PD+ TY  +L G C  GK+  A   L+ M  KG
Sbjct: 470 LLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKG 529

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGA 396
             PDIVTY C LK L        A  L+  +I + G +     YN +++ Y + G+    
Sbjct: 530 LVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHKV 589

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
             T ++M++     +  +Y +++ G      +  + +L +++V KG+K     +   ++ 
Sbjct: 590 EMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILG 649

Query: 457 LSVIGDLGAIHKLSDHM 473
           LS  G +    K  D M
Sbjct: 650 LSKHGMIEIAVKFLDKM 666



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 130/315 (41%), Gaps = 55/315 (17%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           ++   N++L+++C  G +  A+ +  ++K+   PN  TYN +             M  LE
Sbjct: 224 DVTTCNIVLNSMCIEGNLKGAKHMIHKMKSCSLPNVITYNTILHWYVKKGRFKAAMCVLE 283

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M + G   D +TYN  ID  CK +  T A  L + MR  G  + +P   TY  +I    
Sbjct: 284 DMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMR--GDNL-APDECTYNTLIKGFF 340

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              +M     +   M+  G  P ++TY  +++G C  G ++EA + L EM   G  P  V
Sbjct: 341 DESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEV 400

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY----------------------- 380
           TY+  L     N +  EA  +Y  M + GC P V TY                       
Sbjct: 401 TYSAML-----NGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCI 455

Query: 381 ------------NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
                       N L+      G  D A +   +M       D+ TY +++ G     K+
Sbjct: 456 VHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKI 515

Query: 429 EEACFLLEEVVNKGL 443
             A  LL+ ++ KGL
Sbjct: 516 VPAVILLQMMLEKGL 530



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 133/324 (41%), Gaps = 51/324 (15%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------GM---- 219
           K  P   + N+L+    K G +  +  + K  V+  +KP   TY +L       GM    
Sbjct: 600 KVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIA 659

Query: 220 -QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + L++M+  G  PD  +++  I+ F +   +++A  LF  M+       SP++KTY+ M
Sbjct: 660 VKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKW---LYMSPSSKTYSAM 716

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTY---------------------------- 310
           I  L++ + ++    +L  M+ SG  P  + Y                            
Sbjct: 717 INGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGI 776

Query: 311 -------KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
                    ++ G+   GKVEE       +   G  P I T+   +  LC      +AL 
Sbjct: 777 VPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALH 836

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L   M   G    V TYN+LI+   ++     A E + EM  +G   +V TY  + + ++
Sbjct: 837 LKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIY 896

Query: 424 DCSKVEEACFLLEEVVNKGLKLPY 447
              +  E   LL ++ ++GL   Y
Sbjct: 897 GTGRTLEGEKLLNDIEDRGLVPSY 920



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 138/318 (43%), Gaps = 15/318 (4%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL---------- 217
           + + +  +   LN LL  +C  G +D A  +C K V     P+ +TY IL          
Sbjct: 456 VHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKI 515

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  L+ M++ G  PD  TY   +    K   V  A+ LF+ +  K    +   A  Y
Sbjct: 516 VPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIA--Y 573

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             M+   ++  ++ +    +  M  +   P+ ++Y  ++ G    G +  +    ++M  
Sbjct: 574 NSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVR 633

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG  P  VTY   +  L  +   + A++   +M+  G +P   ++++LI+ + E      
Sbjct: 634 KGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSD 693

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A + ++ M     +    TY  MI+GL   + ++ +C +L ++V  GL+  +  + + + 
Sbjct: 694 ALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALIN 753

Query: 456 QLSVIGDLGAIHKLSDHM 473
                GD+    +L + M
Sbjct: 754 AKCRFGDINGAFRLKEEM 771



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 69/148 (46%)

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
           H + S  LP+V TY  +L      G+ + A   LE+M   G   D+ TYN  +  LC  K
Sbjct: 249 HKMKSCSLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMK 308

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
               A  L  RM      P   TYN LI  +F+  +   A   ++EM ++G    + TY 
Sbjct: 309 RSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYT 368

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +IDG      ++EA  +L E+   G+K
Sbjct: 369 TLIDGYCRNGTIDEALRVLYEMQVAGVK 396



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 3/195 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M++ G  P +  Y   I+  C+   +  A  L E M   G     P     + ++  
Sbjct: 733 LRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIV---PAEVADSSIVRG 789

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  ++EE   +   +I +G +P ++T+  ++ G+C   K+ +A      M + G   D
Sbjct: 790 LSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKID 849

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +  LC  +   +AL LY  M   G  P+V TY  L    +  G      +  +
Sbjct: 850 VVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIYGTGRTLEGEKLLN 909

Query: 402 EMDKRGCAQDVDTYC 416
           +++ RG        C
Sbjct: 910 DIEDRGLVPSYTDQC 924



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 114/288 (39%), Gaps = 30/288 (10%)

Query: 217 LGMQTLEEMIQM-GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-- 273
           L ++ L  ++Q  G       Y  A     +A+M ++A  L + +   G + S+  +   
Sbjct: 86  LALKILSSIVQRSGLERITHIYCMAAQILTQAKMHSQAMSLLKHLAMTGFSCSAVFSSLL 145

Query: 274 -----------TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
                       + +++ A V+  R+ +    +  M N G          VL  +   G+
Sbjct: 146 CTISRCDSNPLVFDLLVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGE 205

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            +  + FL+E   + +P D+ T N  L  +C   N   A  +  +M      P+V TYN 
Sbjct: 206 SKHVWFFLKEGLVRKFPLDVTTCNIVLNSMCIEGNLKGAKHMIHKMKSCS-LPNVITYNT 264

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           ++  Y + G    A     +M+K G   DV TY +MID L    +   A  LL+ +    
Sbjct: 265 ILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDN 324

Query: 443 L--------KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482
           L         L    FD   M L       AIH  ++ +R+   P +A
Sbjct: 325 LAPDECTYNTLIKGFFDESKMML-------AIHIFNEMLRQGLKPSLA 365


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 145/337 (43%), Gaps = 15/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVK 208
           K F     L   L  + +  K+   P++     LL  LC    V  A  +  ++ +   +
Sbjct: 122 KCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCR 181

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  T+  L             +  L+ M++ G  P   TY T +D  CK      A +L
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M      I  P    Y+ +I +L ++ R  +  +L   M   G  PD+ TY  ++ G
Sbjct: 242 LRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C +G+  +A + L+EM  +   PD+VTYN  +          EA  LY  M+  G  P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TY+ +I  + +    D A   ++ M  +GC+ ++ T+  +IDG     ++++   LL 
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+   GL      +++ +    ++GDL A   L   M
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 17/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L  + +  +   +P +     L++ LC+ G +  A  +  R+ ++ ++P   TY  +   
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 218 ---------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                     +  L +M ++ H  P+   Y+  ID+ CK    ++A +LF  M+ KG   
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF- 287

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  MIV    + R  +   LL  M+     PDV TY  ++      GK  EA 
Sbjct: 288 --PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  +EM  +G  P+ +TY+  +   C     D A  ++  M   GC P++ T+N LI  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 D   E  HEM + G   D  TY  +I G +    +  A  LL+E+++ GL
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P +   N L+D  C    +D   E + +  +  +  +  TYN L             + 
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
            L+EMI  G  PD  T +T +D  C    + +A ++F+ M+     + +        P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +  + 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+   +   C     D+ L L+  M   G   +  TY  LI  + ++G 
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ GL+   +++ A  +LE++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 27/303 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E +     P     + ++D  CK   +D AE +   +  K   PN  T+N L      
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+ L EM + G   D  TYNT I  F     +  A DL + M + G     P 
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL---CPD 464

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLA 320
             T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GK  EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             LI+ Y + G  D   E + EM +RG   +  TY  +I G      +  A  + +E+++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 441 KGL 443
            G+
Sbjct: 645 SGV 647



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 17/272 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GM 219
           QP       ++D +CK G    A  + ++++  + + PN   Y+ +              
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM + G  PD FTYN+ I  FC +   ++A  L + M  +     SP   TY  +I
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI---SPDVVTYNALI 332

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A V+  +  E   L   M+  G +P+  TY  +++G C   +++ A      M  KG  
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++T+N  +   C  K  D+ + L   M E G      TYN LI  ++ +G+ + A + 
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             EM   G   D+ T   ++DGL D  K+++A
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 5/180 (2%)

Query: 244 FCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           F + + + +A DLF + +R++      P+   +  ++  +V+ +R +   SL   M    
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSR----PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              D+ ++  +++  C   K+  A     ++   G  PD+VT+   L  LC      EAL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L+ +M E  C P+V T+  L++     G    A      M + G      TY  ++DG+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 149/307 (48%), Gaps = 19/307 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNA-------NTYNILG-MQTLEEM 225
           P++    +L+DALC  G ++ A+ +  ++K N  KP+        + +N  G + T +E 
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEF 354

Query: 226 I-QM---GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             QM   G+ PD  T+   +D  CKAR   EA   F+ MR +G     P   TY  +I  
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL---PNLHTYNTLICG 411

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L++  R+E+   LLG M + G  P   TY   ++    +G+  +A +  E+M  KG  P+
Sbjct: 412 LLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPN 471

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IV  N  L  L +     EA  ++  + E G  P   TYNM++  Y ++G+ D A     
Sbjct: 472 IVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLS 531

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM + GC  DV     +ID L+   +V+EA  + + +  K +KL      +Y   LS +G
Sbjct: 532 EMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM--KDMKLS-PTVVTYNTLLSGLG 588

Query: 462 DLGAIHK 468
             G + K
Sbjct: 589 KEGRVQK 595



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 44/368 (11%)

Query: 85  VGVLQRFQ-FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLD 143
           + +L +F  F +   F+ F      D Y  + + + +++D+L     KA+ F    +  D
Sbjct: 336 ITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLC----KARDFDEAFATFD 391

Query: 144 YMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203
            M++   +                       P ++  N L+  L + G ++ A  +   +
Sbjct: 392 VMRKQGIL-----------------------PNLHTYNTLICGLLRAGRIEDALKLLGTM 428

Query: 204 KN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           ++  V+P A TYNI              ++T E+M   G  P+    N ++ +  +   +
Sbjct: 429 ESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRL 488

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            EA  +F  +R  G    +P + TY +M+    +  +++E  +LL  MI +GC PDV   
Sbjct: 489 REAKTMFNGLRENGL---APDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVV 545

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++ +  AG+V+EA++  + M +    P +VTYN  L  L       +A+ L+  MIE
Sbjct: 546 NSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIE 605

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
             C P+  ++N L+  + +  E + A + + +M    C  DV TY  +I GL   +KV  
Sbjct: 606 KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 431 ACFLLEEV 438
           A +   ++
Sbjct: 666 AFWFFHQL 673



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 17/293 (5%)

Query: 183  LLDALCKCGLVDYAETICKRVKNK--VKPNANTYNILGMQTLE------------EMIQM 228
            L+  LCK     YA  I  +   K  + P   +YN L  + LE            +M  +
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 229  GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            G APD FT+N  +    K+  +TE   LFE  +   S    P A TY I+I +L +++ +
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITE---LFELYKEMISRRCKPDAITYNIVISSLAKSNNL 874

Query: 289  EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            ++       +++S   P   TY  +++G+   G++EEA +  EEM + G  P+   +N  
Sbjct: 875  DKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNIL 934

Query: 349  LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
            +       + + A +L+ RM+  G  P +++Y +L+      G  D A   ++E+   G 
Sbjct: 935  INGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGL 994

Query: 409  AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              D   Y  +I+GL    ++EEA  L  E+ N+G+      ++S ++ L + G
Sbjct: 995  DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAG 1047



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 161  ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILG- 218
            I  ++T+K+ +   P + + N L+  L +    + A  + K +KN    P+A T+N+L  
Sbjct: 774  IFDKFTKKLGI--SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 219  -----------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                        +  +EMI     PD  TYN  I +  K+  + +A D F  +    S+ 
Sbjct: 832  VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV---SSD 888

Query: 268  SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
              PT +TY  +I  L +  R+EE   L   M + GC P+ + +  ++ G    G  E A 
Sbjct: 889  FRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETAC 948

Query: 328  KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
            +  + M N+G  PD+ +Y   +  LC     DEAL  +  +   G  P    YN +I+  
Sbjct: 949  QLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008

Query: 388  FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +    + A   ++EM  RG   D+ TY  ++  L     VE+A  + EE+   GL+
Sbjct: 1009 GKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLE 1065



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 24/279 (8%)

Query: 164  QYTEKI--------KVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTY 214
             YTEK          V   P+    N+LL    K G + +  E   + +  + KP+A TY
Sbjct: 802  HYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITY 861

Query: 215  NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            NI+             +    +++     P   TY   ID   K   + EA  LFE M  
Sbjct: 862  NIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSD 921

Query: 263  KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
             G     P    + I+I    +    E    L   M+N G  PD+ +Y  +++ +CLAG+
Sbjct: 922  YGC---KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGR 978

Query: 323  VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            V+EA  +  E+ + G  PD + YN  +  L  ++  +EAL LY  M   G  P + TYN 
Sbjct: 979  VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNS 1038

Query: 383  LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            L+      G  + A   + E+   G   DV TY  +I G
Sbjct: 1039 LMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRG 1077



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 16/223 (7%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
            +P       L+D L K G ++ A  + + + +   KPN   +NIL              Q
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              + M+  G  PD  +Y   +D  C A  V EA   F  +++ G     P    Y  +I 
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGL---DPDFIAYNRIIN 1006

Query: 281  ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             L ++ RMEE  +L   M N G +PD+ TY  ++  + LAG VE+A +  EE+   G  P
Sbjct: 1007 GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEP 1066

Query: 341  DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            D+ TYN  ++    ++N + A  +Y  M+  GC P++ TY  L
Sbjct: 1067 DVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 16/268 (5%)

Query: 161  ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-- 217
            + + Y E I  + +P+    N+++ +L K   +D A +     V +  +P   TY  L  
Sbjct: 842  LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLID 901

Query: 218  ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       M+  EEM   G  P+   +N  I+ + K      A  LF+ M  +G   
Sbjct: 902  GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGI-- 959

Query: 268  SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
              P  K+Y I++  L    R++E       + ++G  PD   Y  ++ G+  + ++EEA 
Sbjct: 960  -RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEAL 1018

Query: 328  KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
                EM N+G  PD+ TYN  +  L      ++A R+Y  +   G  P V TYN LI  Y
Sbjct: 1019 ALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078

Query: 388  FELGEPDGAFETWHEMDKRGCAQDVDTY 415
                 P+ A+  +  M   GC  ++ TY
Sbjct: 1079 SLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 134/308 (43%), Gaps = 16/308 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILG------------MQTLEEMIQ 227
           N L+  L + G    A  + +R V   +KP+  TY+ L             M  L+EM  
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMED 255

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +G  P+ +T+   I    +A  + EA ++F  M  +G     P   TY ++I AL    +
Sbjct: 256 LGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGC---GPDLVTYTVLIDALCNAGQ 312

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E    L   M  +G  PD   Y  +L+     G ++   +F  +M   GY PD+VT+  
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            + VLC  ++ DEA   +  M + G  P++ TYN LI      G  + A +    M+  G
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG 432

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
                 TY + ID      +  +A    E++  KG+       ++ L  L+ +G L    
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 468 KLSDHMRK 475
            + + +R+
Sbjct: 493 TMFNGLRE 500



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M + G   + ++YN  I    ++    EA +++  M ++G     P+ KTY+ ++VA
Sbjct: 180 LNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL---KPSLKTYSALMVA 236

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +    E    LL  M + G  P+V T+   +  +  AGK++EAY+    M ++G  PD
Sbjct: 237 LGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPD 296

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC+    + A  L+ +M   G  P    Y  L+  + + G+ D   E W 
Sbjct: 297 LVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +M+  G   DV T+ +++D L      +EA F   +V+ K   LP
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEA-FATFDVMRKQGILP 400



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 161/395 (40%), Gaps = 87/395 (22%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------- 217
           +E I+   +P++  +N L+D+L K G VD A  +  R+K+ K+ P   TYN L       
Sbjct: 531 SEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKE 590

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 ++  E MI+   +P+  ++NT +D FCK   V  A  +F  M         P  
Sbjct: 591 GRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDC---KPDV 647

Query: 273 KTYAIMIVALVQNDRMEECF------------------SLLGHMINSGCLPDV------- 307
            TY  +I  L++ +++   F                  +LL  ++  G + D        
Sbjct: 648 LTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDF 707

Query: 308 ----------STYKEVLEGMCLAGKVEEAYKFLEEM------------------------ 333
                     S +++++ G  +  ++++A  F EE+                        
Sbjct: 708 MYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKR 767

Query: 334 ------------GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
                          G  P + +YNC +  L +    ++A  L+  M  VGC P   T+N
Sbjct: 768 ELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFN 827

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           ML++++ + G+    FE + EM  R C  D  TY ++I  L   + +++A     ++V+ 
Sbjct: 828 MLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSS 887

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
             +   R +   +  L+ +G L    +L + M  +
Sbjct: 888 DFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 3/224 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V + A +FEFM+ K   I      TY  +  AL     + +  ++L  M  +G + +  +
Sbjct: 138 VEDMAAVFEFMQKK---IIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYS 194

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++  +  +G   EA +    M ++G  P + TY+  +  L   ++ +  + L   M 
Sbjct: 195 YNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEME 254

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           ++G  P+V T+ + I +    G+ D A+E +  MD  GC  D+ TY V+ID L +  ++E
Sbjct: 255 DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLE 314

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            A  L  ++   G K     + + L + +  GDL    +    M
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQM 358



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 153/402 (38%), Gaps = 60/402 (14%)

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMK--RNNKVFVPVDVLLMILKQ----------YTE 167
           ++++ L  + YKA +      M D MK  + +   V  + LL  L +          +  
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEEMI 226
            I+ K  P   + N LLD  CK   V+ A +   K      KP+  TYN +    ++E  
Sbjct: 603 MIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKEN- 661

Query: 227 QMGHA------------PDNFTYNTAIDTFCKARMVTEAADL---------FEFMRT--- 262
           ++ HA            PD+ T  T +    K   + +A  +         F   R+   
Sbjct: 662 KVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWE 721

Query: 263 --KGSTISSPTAKTYAIMIVALVQNDR-MEECF-------------SLLGHMI------N 300
              G T+         I    LV N    E+ F              L  + I       
Sbjct: 722 DLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKK 781

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  P +++Y  ++  +      E+A+   ++M N G  PD  T+N  L V   +    E
Sbjct: 782 LGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITE 841

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
              LY  MI   C P   TYN++IS   +    D A + ++++          TY  +ID
Sbjct: 842 LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLID 901

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           GL    ++EEA  L EE+ + G K     F+  +     IGD
Sbjct: 902 GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 38/205 (18%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T +T   M+  L  +D++E+  ++   M       D+ TY  + + + + G + +    L
Sbjct: 121 TTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVL 180

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            +M   G+  +  +YN  + +L  +    EAL +Y RM+  G  PS++TY+ L+     L
Sbjct: 181 NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALM---VAL 237

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+            KR      D+  VM+              LL+E+ + GL+      
Sbjct: 238 GK------------KR------DSEMVMV--------------LLKEMEDLGLR---PNV 262

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRK 475
            ++ + + V+G  G I +  +  R+
Sbjct: 263 YTFTICIRVLGRAGKIDEAYEIFRR 287


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 183/438 (41%), Gaps = 26/438 (5%)

Query: 54  LYEAIIDNSNAYDNMEKALDSLGVPLTTDSV-VGVLQRFQFEEKIAFRFFMWAGHQDNYA 112
           +++ I +   A+       D  G  +T   + + VL   +   ++A RFF W   Q ++ 
Sbjct: 57  IFDTIKEKPWAFCKNNWVSDQFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFK 116

Query: 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL----MILKQYTEK 168
                +  ++DIL         + ++  ++ +     ++   VDVL+      L  + + 
Sbjct: 117 ESEFVFCAILDILVGNDLMHAAYWVMERVVSF-----EMHGVVDVLIAGHVXCLLVFDKM 171

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
           I+    P++   N +L  L    L+  A+ +   ++   +KP   TYN +          
Sbjct: 172 IRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRV 231

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L EM + G  P++ TYN  ++   K   + +A  L E M   G  +S   A TY
Sbjct: 232 DQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS---AYTY 288

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I    Q     E F L+  M+N    P +STY  ++ G+C   +V        +M  
Sbjct: 289 NPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLK 348

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
             + PDIV++N  L   C      EA  L+  +      P+V TYN LI      G  D 
Sbjct: 349 SKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDA 408

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A     EM  +G   D+ TY ++++G F    V  A     E+++KGLK     +++ ++
Sbjct: 409 ALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIV 468

Query: 456 QLSVIGDLGAIHKLSDHM 473
               I D      + + M
Sbjct: 469 GEMKIADTSVAFSMQEEM 486



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N L+  LC  G +D A  + K + ++ + P+  TY IL                
Sbjct: 388 PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGF 447

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+  G  PD F YNT I    K    + A  + E M   G     P   TY + + A
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGF---PPDVITYNVFVHA 504

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q    EE   LL +M++ G +PD  TY  ++ G    G + +A +   EM +KG  P 
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +      +  D A   + +M+E     +V TYN +I+        D A++ + 
Sbjct: 565 VVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFD 624

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM+++G   +  +Y ++I+   +    EEA  L  E++++ ++
Sbjct: 625 EMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQ 667



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 16/261 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQTL--------- 222
           P+I    +L++   K G V  A      + +K +KP+   YN  I+G   +         
Sbjct: 423 PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSM 482

Query: 223 -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM+  G  PD  TYN  +   C+     EA DL E M + G     P   TY  +I  
Sbjct: 483 QEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLI---PDHVTYTSIING 539

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            V+N  + +   +   M++ G  P V TY  ++        ++ A+ +  +M  K  P +
Sbjct: 540 FVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN 599

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  LC  +  DEA + +  M E G  P+  +Y +LI+    +G  + A   + 
Sbjct: 600 VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYR 659

Query: 402 EMDKRGCAQDVDTYCVMIDGL 422
           EM  R    D  T+ V +  L
Sbjct: 660 EMLDRKIQPDSFTHSVFLKNL 680



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 123/287 (42%), Gaps = 51/287 (17%)

Query: 181 NLLLDALCKCGL-VDYAETICKRVKNKVKPNANTYNIL-----------GMQ-TLEEMIQ 227
           N L++  C+ GL V+  + + + V  +  P  +TYN L           G++    +M++
Sbjct: 289 NPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLK 348

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  ++N+ +  +C+   ++EA  LF+ ++ +      PT  TY  +I  L     
Sbjct: 349 SKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLV---PTVITYNTLIHGLCMWGY 405

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG---------- 337
           ++    L   M + G  PD+ TY  ++ G    G V  A  F  EM +KG          
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 338 -------------------------YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
                                    +PPD++TYN F+  LC   N +EA  L   M+  G
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
             P   TY  +I+ + + G    A E ++EM  +G A  V TY V+I
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+I   N+L+ A   CG++D A  I   +++  VKP+  TY  +             M+ 
Sbjct: 392 PDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 451

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G APD + Y+  I  FC    + +A +L   +   G  +       ++ +I  
Sbjct: 452 FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLD---IVFFSSIINN 508

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  P    Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 509 LCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V Y   +   C     DE L L+  M++ G  PS   YN++I   FE G    A   +H
Sbjct: 569 DVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFH 628

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A +  TY +++ GLF     +EA FL +E+    +K+
Sbjct: 629 EMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 672



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P+    + ++ ALCK   +D AE   +++ NK V PN  TYN L      
Sbjct: 242 FKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSS 301

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD  T +  + + CK   + EA D+F+ M  KG    +P 
Sbjct: 302 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ---NPN 358

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  PD+ T+  +++     G +++A     
Sbjct: 359 VFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFN 418

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  PD+VTY   +  LC     D+A+  + +MI+ G  P    Y+ LI  +   G
Sbjct: 419 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 478

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A E   E+   G   D+  +  +I+ L    +V +A  + +  VN GL
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 135/337 (40%), Gaps = 53/337 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNIL------------GM 219
           P++ + ++LL +LC  G    A+ + + +        P+   Y+ +              
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKAC 239

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              +EM+Q G  PD  TY++ +   CKAR + +A      M  KG     P   TY  +I
Sbjct: 240 DLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL---PNNWTYNNLI 296

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-- 337
                  + +E   +   M     LPDV T   ++  +C  GK++EA    + M  KG  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 338 ---------------------------------YPPDIVTYNCFLKVLCDNKNGDEALRL 364
                                              PDI T+N  +K   +    D+A+ +
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M + G  P V TY  +I+    +G+ D A E +++M  +G A D   Y  +I G   
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476

Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              + +A  L+ E++N G+ L    F S +  L  +G
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 513



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   ++     +L+G C A
Sbjct: 100 RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEA 159

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +Y+  LK LCD     +A  L   M E G  C P V
Sbjct: 160 KRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDV 219

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             Y+ +I  +F+ G+ + A + + EM +RG   D  TY  ++  L     +++A   L +
Sbjct: 220 VAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279

Query: 438 VVNKGLKLP 446
           +VNKG+ LP
Sbjct: 280 MVNKGV-LP 287



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 16/250 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P ++TY IL             +    ++++ G   +    N  +  FC+A+   EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKE 312
           D+      +   +  P   +Y+I++ +L    +  +   LL  M   G  C PDV  Y  
Sbjct: 167 DILLHRTPELGCV--PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYST 224

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V++G    G V +A    +EM  +G PPD VTY+  +  LC  +  D+A     +M+  G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P+  TYN LI  Y   G+   A   + EM +     DV T  +++  L    K++EA 
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 344

Query: 433 FLLEEVVNKG 442
            + + +  KG
Sbjct: 345 DVFDTMAMKG 354



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 48/293 (16%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L    ++G  PD F+Y+  + + C      +A DL   M  +G  + SP    Y+ +I  
Sbjct: 170 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMM-AEGGAVCSPDVVAYSTVIDG 228

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + +   L   M+  G  PD  TY  V+  +C A  +++A  FL +M NKG  P+
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +          EA+R++  M      P V T +ML+    + G+   A + + 
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 348

Query: 402 EMDKRGCAQDVDTYCVMIDG------------LFD-----------------------CS 426
            M  +G   +V +Y +M++G            LFD                       C 
Sbjct: 349 TMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCG 408

Query: 427 KVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +++A  +  E+ + G+K   + YR         +VI  L  I K+ D M KF
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYR---------TVIAALCRIGKMDDAMEKF 452



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 16/242 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMG 229
           +++ LCK G V  A+ I     N  + P A  Y++L             ++  + M+  G
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P++  Y T ++ +CK   + E   LF  M  KG     P+   Y I+I  L +  R  
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI---KPSTILYNIIIDGLFEAGRTV 621

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
                   M  SG   +  TY  VL G+      +EA    +E+       +I+T N  +
Sbjct: 622 PAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 681

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             +   +  +EA  L+  +   G  P V TY+++I+   + G  + A + +  M   GC 
Sbjct: 682 AGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 410 QD 411
            D
Sbjct: 742 PD 743



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR- 363
           P   TY  +++    A + E A  F  ++   G   +I+  N  LK  C+ K  DEAL  
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDI 168

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG--CAQDVDTYCVMIDG 421
           L  R  E+GC P V +Y++L+    + G+   A +    M + G  C+ DV  Y  +IDG
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDG 228

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            F    V +AC L +E+V +G+   +  + S +  L
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHAL 264



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 16/265 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V   P     ++L+D  C  G ++ A  +    V   ++PN   Y  L          
Sbjct: 526 VNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRI 585

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
             G+    EM+Q G  P    YN  ID   +A     A   F  M   G  ++  T   Y
Sbjct: 586 DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT---Y 642

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I++  L +N   +E   L   +       ++ T   ++ GM    +VEEA      +  
Sbjct: 643 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISR 702

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  P +VTY+  +  L      +EA  ++  M   GC P  +  N ++    +  E   
Sbjct: 703 SGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVR 762

Query: 396 AFETWHEMDKRGCAQDVDTYCVMID 420
           A     ++D+R  + +  T  +++D
Sbjct: 763 AGAYLSKIDERNFSLEHLTTMLLVD 787


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 137/306 (44%), Gaps = 25/306 (8%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
           I    QP+I   N+L+  LCK G + +A  +                      + EM + 
Sbjct: 382 INFGFQPDIFTYNILMHGLCKEGSLSFARDL----------------------VNEMSRR 419

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+  TY   ++  CKA ++ EA  +   M  +G TI+S     Y  +I AL + +++
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVI---YNCLICALCRKEKV 476

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
               +LL  M   GC PD+ TY  ++ G+C   +++EA++    M   G   + VTYN  
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  L       +AL L   M+  GC     TYN LI  + ++G  +   E + +M   G 
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D  +  +MI+GL    KV+ A   L + +N+G       ++S L  L  +G +     
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 469 LSDHMR 474
           L D ++
Sbjct: 657 LFDRLQ 662



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 208/486 (42%), Gaps = 43/486 (8%)

Query: 23  TKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNS---NAYDNMEKALDSLGVPL 79
           TK  +S+I   P  +CK+ +   D V  + +++E +       + +D     ++ LG   
Sbjct: 68  TKLRKSHILITPVQLCKLLELPLD-VPTLLEIFERVGGQKGYCHTFDVYYVFINKLGAIG 126

Query: 80  TTDSVVGVLQRFQFEEKIAFR---FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
               +  +L + + EE I FR   F +   H         A  L++D + +       F+
Sbjct: 127 KFKLIDKLLMQMK-EEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLD-MRAVYLCEPTFK 184

Query: 137 LVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
               +L+ +   N   V  +V   +L +          P +    +++ ALC    VD A
Sbjct: 185 SYDLVLEILVTGNCPQVATNVFYDMLSK-------GVSPTVFTFGIVMKALCMFNEVDSA 237

Query: 197 ETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDT 243
            ++ + + K+   PN+  Y  L             ++ LEEM  MG  PD  T+N  I  
Sbjct: 238 CSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            CK   + +A  L + M  +G     P   TY  ++  L +  ++ E   +L   I   C
Sbjct: 298 LCKVNKIHDATKLVDRMLLRGFY---PDNMTYGFLLHGLCRIGKLNEARKIL---IKIPC 351

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEE-MGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
            P+ +    ++ G  ++G+++EA  FL E M N G+ PDI TYN  +  LC   +   A 
Sbjct: 352 -PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFAR 410

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L   M   GC P+V TY +L++   + G  + A    HEM  RG   +   Y  +I  L
Sbjct: 411 DLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICAL 470

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482
               KV  A  LL E+  KG K     ++      S+I  L  + ++ +  R F+N ++ 
Sbjct: 471 CRKEKVHVALNLLSEMCTKGCKPDLFTYN------SLIYGLCKVDRIDEAFRLFHNMLLD 524

Query: 483 RRLALN 488
             +A N
Sbjct: 525 GAVANN 530



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 135/313 (43%), Gaps = 51/313 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P +    +L++ LCK GL++ A  +   +  + +  N+  YN L             + 
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM   G  PD FTYN+ I   CK   + EA  LF  M   G+  ++ T   Y  +I 
Sbjct: 482 LLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVT---YNTLIH 538

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE------------------------- 315
           AL++    ++  +L+  M+  GC  D  TY  +++                         
Sbjct: 539 ALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGA 598

Query: 316 ----------GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                     G+C  GKV+ A++FL +  N+G+ PDIVTYN  L  LC      EAL L+
Sbjct: 599 DTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF 658

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            R+   G  P   TYN  IS   + G  + A   ++   + G      T+ V++  L   
Sbjct: 659 DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQ 718

Query: 426 SKVEEACFLLEEV 438
           S  E   F+L+E+
Sbjct: 719 SNQENNFFVLDEL 731



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 90/271 (33%), Gaps = 75/271 (27%)

Query: 98  AFRFFMWAGHQ---DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRN 148
           AFR F    H    D      + YN +I  L       K   LV  ML      D +  N
Sbjct: 514 AFRLF----HNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 149 N--KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
              K F  V  +   L+ Y + I      +  + N++++ LCK G VD A          
Sbjct: 570 GLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNA---------- 619

Query: 207 VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                        + L + I  G  PD  TYN+ ++  CK   + EA +LF+ ++ +G  
Sbjct: 620 ------------FEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVR 667

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
                                                 PD  TY   +   C  G V +A
Sbjct: 668 --------------------------------------PDAFTYNTFISWQCKEGMVNDA 689

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
             F       G+ P  +T+N  +  L    N
Sbjct: 690 CLFFYRGIENGFVPSNLTWNVLVYTLLKQSN 720


>gi|356497975|ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g26500-like [Glycine max]
          Length = 494

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 45/403 (11%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           LT +  + V  +F +  +  +RFF++     ++ H P+++N M+D++     K++   L 
Sbjct: 65  LTHEFFLQVCNKFPYSWRPVYRFFLYTQSLPHFTHSPVSFNKMLDVVG----KSRNIDLF 120

Query: 139 CSMLDYMKR----NNKVFVPVDVLLMILKQYTEKIKV-------KTQPEINALNLLLDAL 187
             +L+ M R    N+K FV     L   ++  + ++          +  +  LN +++A+
Sbjct: 121 WDLLNDMARRHFVNDKTFVIALRTLGGARELKKCVEFFHLMNSNGCEYNLGTLNKVVEAM 180

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTY-----------NILGMQTLEEMIQ-MGHAPDNF 235
           CK  LVD A+ +  +++  V+P+  TY           +++G   +  +++  G   D  
Sbjct: 181 CKSRLVDEAKFVVFKLRECVRPDGVTYKNLIIGYCDKGDLVGASKVWNLMEDEGFEADVD 240

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
                ++TF K     EA  LFE MR K   ++   A TY ++I  L +   M     + 
Sbjct: 241 AVEKMMETFFKVNEYGEALRLFETMRFK--RMNELGASTYGLVIRWLCKKGMMARAHEVF 298

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M   G   + ST  +V+ G+    +V EAY+  E +      PD+  Y+ F+K L   
Sbjct: 299 EEMRERGVRVNDSTLGDVVYGLLTRRRVREAYRVFEGI----EVPDLCVYHGFIKGLLKL 354

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           +   EA +++  MI  GC P++ TY ML+  +  LG             ++G    V+  
Sbjct: 355 RRAGEATQVFREMIRRGCEPTMHTYIMLLQGH--LG----------RRGRKGTDPLVNFD 402

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            + + G+    K +EA   +E V+N+G+++P   ++ +L   S
Sbjct: 403 TIFVGGMVKAGKSKEATKYVERVLNRGMEVPRFDYNKFLHYFS 445


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 152/326 (46%), Gaps = 22/326 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-------- 217
           E +  K  P   +L  ++DALCK G+V  A  +   + ++ V+P+  TY  L        
Sbjct: 274 EMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRS 333

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM-RTKGSTISSPTA 272
                ++  + M+  G AP+ F+YNT I+ +CK   + +A  LFE M R K      P  
Sbjct: 334 EMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQK----LIPNT 389

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I  L    R+++  +L   M+  G +PD+ TY+ +L+ +C    +++A   L+ 
Sbjct: 390 VTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKA 449

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           +      PDI  Y   +  +C     ++A  L+  +   G  P+V TYN++     + G 
Sbjct: 450 IEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGL 509

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A + + EMD+  C+ D  TY  +  G    ++   A  LLEE++ +G          
Sbjct: 510 LDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTL 569

Query: 453 YLMQLSVIG-DLGAIHKLSD---HMR 474
            +  LS  G D    HKL D   H+R
Sbjct: 570 LVGMLSDDGLDQSEAHKLEDMFPHLR 595



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 140/303 (46%), Gaps = 21/303 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           +K+  QP+  +   L+  LC  G +  A     K +    +P+   Y  L          
Sbjct: 136 LKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHT 195

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              ++ L  M +    PD   Y T I + CK R  T+A +LF  M TKG    SP   T 
Sbjct: 196 SAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGI---SPNIVTC 252

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++ AL      +   +LL  M++S  +P+  +   V++ +C  G V +A+  ++ M  
Sbjct: 253 NSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQ 312

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  PD+VTY   +   C     DEA++++  M+  GC P+V +YN LI+ Y ++   D 
Sbjct: 313 SGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDK 372

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YRKFD 451
           A   + EM ++    +  TY  +I GL    ++++A  L  E+V  G ++P    YR   
Sbjct: 373 AMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACG-QIPDLVTYRILL 431

Query: 452 SYL 454
            YL
Sbjct: 432 DYL 434



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 161/397 (40%), Gaps = 49/397 (12%)

Query: 64  AYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA-----FRFFMWAGHQDNYAHEPLAY 118
           A+  + K L  LG    T S   +++    E +I      F   +W G Q +     + Y
Sbjct: 128 AFSVLAKIL-KLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDV----VIY 182

Query: 119 NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM-----------ILKQYTE 167
             +I+ L  T + +   RL+ SM    K N +  V V   L+               ++E
Sbjct: 183 ATLINGLCKTGHTSAAIRLLRSM---EKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSE 239

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQ 227
            I     P I   N L+ ALC  G   +  T+                      L EM+ 
Sbjct: 240 MITKGISPNIVTCNSLVYALCNLGEWKHVNTL----------------------LNEMVD 277

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P+  +  T +D  CK  MV +A D+ + M   G     P   TY  +I        
Sbjct: 278 SKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGV---EPDVVTYTALIDGHCLRSE 334

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           M+E   +   M++ GC P+V +Y  ++ G C   ++++A    EEM  +   P+ VTYN 
Sbjct: 335 MDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNT 394

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC      +A+ L+  M+  G  P + TY +L+    +    D A      ++   
Sbjct: 395 LIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSN 454

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              D+  Y ++IDG+    ++E+A  L   + +KGLK
Sbjct: 455 LDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLK 491



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 111/253 (43%), Gaps = 5/253 (1%)

Query: 191 GLVDYAETICKRVKNKVKPNANTYNIL--GMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
           G++         + N+ +     +N L   + +   M+ M   P    +   + +  K +
Sbjct: 29  GMLSIPSPFLSLLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVK 88

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
             +    L   M + G         T  ++I +    +R+   FS+L  ++  GC PD +
Sbjct: 89  RYSTVLSLSRKMDSFGI---PHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTA 145

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           ++  +++G+CL G++ EA    ++M  +G+ PD+V Y   +  LC   +   A+RL   M
Sbjct: 146 SFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSM 205

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            +  C P V  Y  LI    +  +   AF  + EM  +G + ++ T   ++  L +  + 
Sbjct: 206 EKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEW 265

Query: 429 EEACFLLEEVVNK 441
           +    LL E+V+ 
Sbjct: 266 KHVNTLLNEMVDS 278



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 87/204 (42%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   +A ++ ++ +  R     SL   M + G   +V T   ++   C   +V  A+  
Sbjct: 72  PSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSV 131

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L ++   G  PD  ++   +K LC      EAL L+ +MI  G  P V  Y  LI+   +
Sbjct: 132 LAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCK 191

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G    A      M+K  C  DV  Y  +I  L    +  +A  L  E++ KG+      
Sbjct: 192 TGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVT 251

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
            +S +  L  +G+   ++ L + M
Sbjct: 252 CNSLVYALCNLGEWKHVNTLLNEM 275



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 66/153 (43%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A      M +   PP IV +   L  +   K     L L  +M   G   +V T N+
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ +  L   + AF    ++ K GC  D  ++  +I GL    ++ EA  L ++++ +G
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEG 174

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +     + + +  L   G   A  +L   M K
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEK 207


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL- 217
           + L  Y E  + +  P    LNL++ A CK G +D A  + + +      PN  +YN L 
Sbjct: 221 IALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLI 280

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       M+    M + G  PD  T+NT ++ FCK   + EA+ LF  M  KG +
Sbjct: 281 AGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEM--KGMS 338

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           +S PT  TY I+I    +    E    L   M       D+ TY  ++ G+C  GK ++A
Sbjct: 339 LS-PTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKA 397

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
              + E+  KG  P+  T++  +   C  K  + A ++Y  MI+    P  QT+ ML+S 
Sbjct: 398 AYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLST 457

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           + E  + DGA +   EM  R  A DV+    +  GL  C KV+ A  L  E+
Sbjct: 458 FCENEDYDGAVQLLEEMLNRHKAPDVNNLYELCAGLGQCGKVKTAMMLCSEL 509



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 155/373 (41%), Gaps = 36/373 (9%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           LD L + LT   V  +L + Q +  ++  FF W   Q+  +H    + +++ IL+    K
Sbjct: 72  LDCLSMGLTAFRVKHILLKTQKDYVLSLEFFNWVATQNPSSHTLETHCIILHILT----K 127

Query: 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG 191
            ++F+   S+L  +  +  +  P  +   +L  Y       + P +   +LL        
Sbjct: 128 RRKFKSAESILRSIIESCSIDFPSKLFESLLYSYR---LCDSSPHV--FDLLFKTFAHLK 182

Query: 192 -LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
              + ++T C+       P   + N                     Y +++  F +  + 
Sbjct: 183 KFRNASDTFCRMKDYGFLPTVESCN--------------------AYLSSLLNFSRGDIA 222

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                   F R    +   P + T  ++I A  +  R+++   +   M   G  P+V++Y
Sbjct: 223 ------LAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASY 276

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G C  G +  A K    M   G PPD+VT+N  +   C      EA +L+G M  
Sbjct: 277 NTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKG 336

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
           +   P+  TYN+LI+ Y + G  +     + EM +     D+ TY  +I GL    K ++
Sbjct: 337 MSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKK 396

Query: 431 ACFLLEEVVNKGL 443
           A +L+ E+  KGL
Sbjct: 397 AAYLVRELDEKGL 409



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 76/180 (42%)

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M + G LP V +    L  +    + + A  F  EM      P+  T N  +   C   
Sbjct: 193 RMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLVICACCKLG 252

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             D+A  ++  M  +G  P+V +YN LI+ Y   G    A +    M+K G   DV T+ 
Sbjct: 253 RLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFN 312

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +++G     K++EA  L  E+    L      ++  +   S  G+    ++L + M +F
Sbjct: 313 TLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRF 372


>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 169/381 (44%), Gaps = 46/381 (12%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNK------- 150
           A +FF W+GHQ N  H P ++NL++D+L       K F L  +M D +K   K       
Sbjct: 108 AVKFFRWSGHQLNDNHSPYSWNLVVDML------GKNF-LFDAMWDAVKSMKKQGLLSLA 160

Query: 151 VFVPVDVLLMILKQYTEKI-------KVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203
            F  +    +I  +  E I       +     +I ALN LL A+C+ G    A    + V
Sbjct: 161 TFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNV 220

Query: 204 KNKVKPNANTYNIL------------GMQTLEEMI-QMGHAPDNFTYNTAIDTFCKARM- 249
           +  ++P+A+TY IL              QT +EM+  +G  P N +   A D+F  A + 
Sbjct: 221 RGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVS---AYDSFLNALLH 277

Query: 250 ----VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CL 304
                 EA   FE MR +     SP  + Y I +   V+    +    L   M++   C 
Sbjct: 278 GPDGRREAMKFFEIMRDRQC---SPGMRFYRIGLQECVKTSDSKGAQLLWQTMLSRNICR 334

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PD   Y  ++   C    +  A   L+EM   G  PD  TYN   + L   +  +EA  +
Sbjct: 335 PDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKLEEAFSI 394

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +  M++  C P +   N  + +Y +LG+   A + W  + +   +   +T  +++ GL D
Sbjct: 395 FSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLLVTGLRD 454

Query: 425 CSKVEEACFLLEEVVNKGLKL 445
             ++ EA    ++++ +G+KL
Sbjct: 455 HDRIPEAVKYAKDMIVRGIKL 475


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 137/282 (48%), Gaps = 18/282 (6%)

Query: 182 LLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           L++DA C+ G V+       K V+  + PN   +  L              + LEEM++ 
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           G  P+ +T+ T ID  CK     +A  LF + +R+ G     P   TY  MI    + D+
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGY---KPNVHTYTAMINGYCKEDK 380

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +     LL  M   G +P+ +TY  +++G C  G    AY+ ++ MG +G+ P+I TYN 
Sbjct: 381 LNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNA 440

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC   + DEA RL  ++   G      TY +L+S++    + + +   +++M K G
Sbjct: 441 IIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVG 500

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
              D+ +Y  +I       +++E+  L EE V+ GL +P +K
Sbjct: 501 FTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGL-IPTKK 541



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 17/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVK-NKVKPNANTYNIL------- 217
           E ++   +P +     L+D LCK G  + A     K V+ +  KPN +TY  +       
Sbjct: 319 EMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKE 378

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                    L  M + G  P+  TY T ID  CK      A +L + M  +G    SP  
Sbjct: 379 DKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGF---SPNI 435

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I  L +   ++E + LL  +   G   D  TY  ++   C       +  F  +
Sbjct: 436 YTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNK 495

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G+ PDI +Y   +   C  K   E+ RL+   + +G  P+ +TY  +I  Y   G 
Sbjct: 496 MLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGN 555

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              A + +  M   GCA D  TY  +I GL   SK+++A  L + +++KGL
Sbjct: 556 TSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 165/385 (42%), Gaps = 32/385 (8%)

Query: 79  LTTDSVVGVLQRFQFE--EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
           LT D  + V+     E    +A  F  WA     + H    Y +    L   K   +   
Sbjct: 96  LTHDQAITVVASLADEAGSMVALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERANE 155

Query: 137 LVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
           ++  M+     N K+   V++++ +  Q          P    LN +LD     GLV+ A
Sbjct: 156 VMQCMVMNFAENGKLKEAVNMVVEMQNQ-------GLVPSTQTLNCVLDVAVGMGLVEIA 208

Query: 197 ET----ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
           E     +C+R    V P+  ++ ++              + L  M++ G   DN T    
Sbjct: 209 ENMFVEMCQR---GVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLI 265

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           ID FC+   V      F  M   G    +P    +  +I  L +   +++ F LL  M+ 
Sbjct: 266 IDAFCQKGYVNRVVGYFWKMVEMG---LAPNVINFTALINGLCKQGSIKQAFELLEEMVR 322

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
            G  P+V T+  +++G+C  G  E+A++ FL+ + + GY P++ TY   +   C     +
Sbjct: 323 RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLN 382

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A  L  RM E G  P+  TY  LI  + ++G    A+E    M K G + ++ TY  +I
Sbjct: 383 RAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAII 442

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLK 444
           DGL     ++EA  LL +V   GL+
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHGLQ 467



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 125/313 (39%), Gaps = 48/313 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P ++    +++  CK   ++ AE +  R++ + + PN NTY  L              +
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-----EFMRTKGSTIS------- 268
            ++ M + G +P+ +TYN  ID  CK   + EA  L        ++  G T +       
Sbjct: 422 LMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHC 481

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                               +P   +Y  +I    +  +M+E   L    ++ G +P   
Sbjct: 482 RQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKK 541

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G C  G    A K  + M N G  PD +TY   +  LC     D+A  LY  M
Sbjct: 542 TYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAM 601

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           ++ G  P   T   L   Y +  +   A      ++KR   + V+T   ++  L    K+
Sbjct: 602 MDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNT---LVRKLCSEGKL 658

Query: 429 EEACFLLEEVVNK 441
           + A     ++++K
Sbjct: 659 DMAALFFHKLLDK 671


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 48/322 (14%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-- 217
           +LKQ T+K      P I + N+L+D LCK G++  A+TI   +K N V P+A TY  L  
Sbjct: 348 VLKQMTDK---GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLH 404

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                         L+EM++    P+ +T N  + +  K   ++EA +L   M  KG  +
Sbjct: 405 GYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGL 464

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSL-----------LGHMINS------------GCL 304
            + T     I++  L  +  +++   +           LG++ NS             CL
Sbjct: 465 DTVTCN---IIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCL 521

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PD+ TY  +L G+C AG+  EA     EM  +   PD V YN F+   C       A R+
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET---WHEMDKRGCAQDVDTYCVMIDG 421
              M + GC  S++TYN LI     LG  +  FE      EM ++G + ++ TY   I  
Sbjct: 582 LKDMEKKGCHKSLETYNSLI---LGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQY 638

Query: 422 LFDCSKVEEACFLLEEVVNKGL 443
           L +  KVE+A  LL+E++ K +
Sbjct: 639 LCEGEKVEDATNLLDEMMQKNI 660



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 146/338 (43%), Gaps = 39/338 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P     NL+L   CK GL++ A+T+ + ++ N    +  +YNI                
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAET 347

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L++M   G  P  ++YN  +D  CK  M+++A  +   M+  G     P A TY  ++ 
Sbjct: 348 VLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVC---PDAVTYGCLLH 404

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 +++   SLL  M+ + CLP+  T   +L  +   G++ EA + L +M  KGY  
Sbjct: 405 GYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGL 464

Query: 341 DIVTYNCFLKVLCDNKNGDEA------LRLYGR-----------------MIEVGCWPSV 377
           D VT N  +  LC +   D+A      +R++G                  +IE  C P +
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TY+ L++   + G    A   + EM       D   Y + I       K+  A  +L++
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKD 584

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +  KG       ++S ++ L +   +  IH L D M++
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKE 622



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 13/303 (4%)

Query: 181 NLLLDALCKCGLVDYAETICK--RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN 238
           N+++D LC  G +D A  I K  RV           + +G+   + +I+    PD  TY+
Sbjct: 470 NIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD-DSLIENNCLPDLITYS 528

Query: 239 TAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           T ++  CKA    EA +LF E M  K      P +  Y I I    +  ++   F +L  
Sbjct: 529 TLLNGLCKAGRFAEAKNLFAEMMGEK----LQPDSVAYNIFIHHFCKQGKISSAFRVLKD 584

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   GC   + TY  ++ G+ +  ++ E +  ++EM  KG  P+I TYN  ++ LC+ + 
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEK 644

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            ++A  L   M++    P+V ++  LI  + ++ + D A E + E     C Q    Y +
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVF-ETAVSICGQKEGLYSL 703

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL----GAIHKLSDHM 473
           M + L    ++ +A  LLE V+++G +L    +   +  L    +L    G +HK+ D  
Sbjct: 704 MFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763

Query: 474 RKF 476
             F
Sbjct: 764 YGF 766



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 21/257 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+I   N  + ALCK G V  A  I   ++                 L+E + +   P++
Sbjct: 250 PDIVTFNSRISALCKEGKVLDASRIFSDME-----------------LDEYLGLPR-PNS 291

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN  +  FCK  ++ +A  LFE +R      S    ++Y I +  LV++ +  E  ++
Sbjct: 292 ITYNLMLKGFCKVGLLEDAKTLFESIRENDDLAS---LQSYNIWLQGLVRHGKFIEAETV 348

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M + G  P + +Y  +++G+C  G + +A   +  M   G  PD VTY C L   C 
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCS 408

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               D A  L   M+   C P+  T N+L+   +++G    A E   +M+++G   D  T
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVT 468

Query: 415 YCVMIDGLFDCSKVEEA 431
             +++DGL    ++++A
Sbjct: 469 CNIIVDGLCGSGELDKA 485



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 49/330 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y + +     P+    NLL+ ALC    VD A  +   +  K  KPN  T+ IL      
Sbjct: 135 YKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCK 194

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------- 264
                 G++ L  M   G  P+   YNT + +FC+     ++  + E MR +G       
Sbjct: 195 AGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVT 254

Query: 265 --STISS---------------------------PTAKTYAIMIVALVQNDRMEECFSLL 295
             S IS+                           P + TY +M+    +   +E+  +L 
Sbjct: 255 FNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLF 314

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             +  +  L  + +Y   L+G+   GK  EA   L++M +KG  P I +YN  +  LC  
Sbjct: 315 ESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKL 374

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
               +A  + G M   G  P   TY  L+  Y  +G+ D A     EM +  C  +  T 
Sbjct: 375 GMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTC 434

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            +++  L+   ++ EA  LL ++  KG  L
Sbjct: 435 NILLHSLWKMGRISEAEELLRKMNEKGYGL 464



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 148/328 (45%), Gaps = 43/328 (13%)

Query: 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLL 183
           ILSS+  K K   L+ S++    ++N +        ++  ++ E      +P +   NLL
Sbjct: 65  ILSSSIQKTKLSSLL-SVVSIFAKSNHIDKAFPQFQLVRSRFPE-----NKPSVYLYNLL 118

Query: 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243
           L++  K   V++   + K                      +M+  G AP  +T+N  I  
Sbjct: 119 LESCIKERRVEFVSWLYK----------------------DMVLCGIAPQTYTFNLLIRA 156

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C +  V  A +LF+ M  KG     P   T+ I++    +    ++   LL  M + G 
Sbjct: 157 LCDSSCVDAARELFDEMPEKG---CKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGV 213

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           LP+   Y  ++   C  G+ +++ K +E+M  +G  PDIVT+N  +  LC      +A R
Sbjct: 214 LPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASR 273

Query: 364 LYGRMIEVGCW-----PSVQTYNMLISMYFELGEPDGA---FETWHEMDKRGCAQDVDTY 415
           ++  M E+  +     P+  TYN+++  + ++G  + A   FE+  E D     Q   +Y
Sbjct: 274 IFSDM-ELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQ---SY 329

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + + GL    K  EA  +L+++ +KG+
Sbjct: 330 NIWLQGLVRHGKFIEAETVLKQMTDKGI 357



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 2/220 (0%)

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
           + +  F K+  + +A   F+ +R++    + P+   Y +++ + ++  R+E    L   M
Sbjct: 80  SVVSIFAKSNHIDKAFPQFQLVRSRFPE-NKPSVYLYNLLLESCIKERRVEFVSWLYKDM 138

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
           +  G  P   T+  ++  +C +  V+ A +  +EM  KG  P+  T+   ++  C     
Sbjct: 139 VLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLT 198

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           D+ L L   M   G  P+   YN ++S +   G  D + +   +M + G   D+ T+   
Sbjct: 199 DKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSR 258

Query: 419 IDGLFDCSKVEEACFLLEEV-VNKGLKLPYRKFDSYLMQL 457
           I  L    KV +A  +  ++ +++ L LP     +Y + L
Sbjct: 259 ISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 23/224 (10%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQT 221
           + E +  K QP+  A N+ +   CK G +  A  + K ++ K    +  TYN  ILG+  
Sbjct: 547 FAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI 606

Query: 222 ----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     ++EM + G +P+  TYNTAI   C+   V +A +L + M  K     +P 
Sbjct: 607 KNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNI---APN 663

Query: 272 AKTYAIMIVALVQN---DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
             ++  +I A  +    D  +E F        S C      Y  +   +  AG++ +A +
Sbjct: 664 VFSFKYLIEAFCKVPDFDMAQEVF----ETAVSICGQKEGLYSLMFNELLAAGQLLKATE 719

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
            LE + ++G+      Y   ++ LC     + A  +  +MI+ G
Sbjct: 720 LLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 127/289 (43%), Gaps = 16/289 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P +    +L+D LCK   L D  E +    +    PNA  +N +                
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGY 67

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +E M  MG +P   TYN  ID FCK   +  A ++ + M  +G     P   TY   +  
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGH---EPNHVTYNTFLHG 124

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  ++++  +L   M       DV  Y  +++G+C AGK+ EAY  L+EM N G  P 
Sbjct: 125 LCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPK 184

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  L  LC     +EA +L+ RM   G  P   T+ M++  Y      D A     
Sbjct: 185 PGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQ 244

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           +M   G A     Y  +ID L    +V EA  LL+E++++GL    R +
Sbjct: 245 QMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTY 293



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 114/257 (44%), Gaps = 16/257 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P     N ++DALCK G    A    + +++  V P   TYNIL             ++ 
Sbjct: 43  PNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEI 102

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   GH P++ TYNT +   CK   V +A  LF  M  K   +       Y  +I  
Sbjct: 103 LQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLD---VYGYTTLIDG 159

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q  ++ E +SLL  M NSGC+P    Y  +L  +C   ++ EA+K  + M   G  PD
Sbjct: 160 LCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPD 219

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+   +   C     D+AL L  +M   G  P    YN LI      G    A+    
Sbjct: 220 WLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQ 279

Query: 402 EMDKRGCAQDVDTYCVM 418
           EM  RG + +  TY +M
Sbjct: 280 EMISRGLSPNSRTYALM 296



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M + G  P   T+   +D  CKA  +T+A +L E M  +G     P A  +  ++ AL +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCF---PNALVFNGIMDALCK 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R  E +  +  M + G  P + TY  +++G C   K+  A + L+EM  +G+ P+ VT
Sbjct: 58  EGRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN FL  LC     D+AL L+  M E      V  Y  LI    + G+   A+    EM+
Sbjct: 118 YNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEME 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             GC      Y  ++  L   S++ EA  L + +   G+ LP
Sbjct: 178 NSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGI-LP 218



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 96/204 (47%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  T+ I++  L + +R+ + F L+  M   GC P+   +  +++ +C  G+  EAY +
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGY 67

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +E M + G  P IVTYN  +   C  +    AL +   M   G  P+  TYN  +    +
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G+ D A   +  M ++    DV  Y  +IDGL    K+ EA  LL+E+ N G       
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           +++ L  L     +   HKL   M
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRM 211



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   GC+P V T+  +++G+C A ++ +A++ +E M  +G  P+ + +N  +  LC    
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             EA      M  +G  P++ TYN+LI  + +  +   A E   EM  RG   +  TY  
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            + GL    KV++A  L   +  K ++L    + + +  L   G L   + L D M
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEM 176



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 19/212 (8%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL 217
           L IL++ T +     +P     N  L  LCK G VD A  + + + + K++ +   Y  L
Sbjct: 100 LEILQEMTGR---GHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTL 156

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                           L+EM   G  P    YN  +   CK   + EA  LF+  R  GS
Sbjct: 157 IDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFK--RMTGS 214

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
            I  P   T+ +M+    +  R+++   LL  M ++G  P    Y  +++ +  AG+V E
Sbjct: 215 GIL-PDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSE 273

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           AY+ L+EM ++G  P+  TY    K   D+ N
Sbjct: 274 AYRLLQEMISRGLSPNSRTYALMRKQQTDDSN 305


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 139/302 (46%), Gaps = 21/302 (6%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ET 198
           ++LD ++R  +    V V   I  Q         +P   +   L+ ALC+ G +D A  T
Sbjct: 5   ALLDLLERARRSEQIVVVFRRIFSQ-------DCKPNALSYCYLVKALCRTGKIDKACST 57

Query: 199 ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA---------PDNFTYNTAIDTFCKARM 249
           I +  + K+ P+  TYN++ + TL +  ++  A         PD  TYNT +   CK   
Sbjct: 58  IAEMAREKLVPDVFTYNVV-IDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGR 116

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V +A  LF  M   G T   P+  TY  +I    +  + E  + LL  M +  C P V +
Sbjct: 117 VAQACSLFGSMEGAGIT---PSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYS 173

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ G+C   KV++AY+  EEM   G  PD VTYN  +  LC  +   EA  L   M+
Sbjct: 174 YCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMV 233

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           E G  P   T+  LI           AF  +  M K+GCA D+ T+ V++  L    K+ 
Sbjct: 234 ENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLR 293

Query: 430 EA 431
            A
Sbjct: 294 PA 295



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 121/283 (42%), Gaps = 36/283 (12%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q  EEM   G  PD  TYNT I   C  + + EA DL   M   G     P   T+  +I
Sbjct: 192 QLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGF---QPDKITFTALI 248

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV---------------- 323
             L   DR++E F L   M   GC PD+ T+  ++  +C+  K+                
Sbjct: 249 EGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEA 308

Query: 324 -----------------EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                            + A + L++M  +G PP++VTY  F K L D K G  A R + 
Sbjct: 309 VILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFR 368

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           RM+E G  P +  YN+L+  + +    D A +    MD+ G   ++ TY  ++       
Sbjct: 369 RMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKG 428

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           KVE    LL  +V++G +     + + +  L ++G   A +  
Sbjct: 429 KVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSF 471



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 109/277 (39%), Gaps = 55/277 (19%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N LLD L +    +    + +R+     KPNA +Y  L               T+ EM +
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD FTYN  IDT CKAR ++ A + FE                             
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFFE----------------------------T 95

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           M E              PDV TY  +L G+C  G+V +A      M   G  P  VTY  
Sbjct: 96  MPE--------------PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTT 141

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            + V C     + A  L   M    C P+V +Y  +I+   +  + D A++ + EM   G
Sbjct: 142 LIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAG 201

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           C  D  TY  +I GL    ++ EA  LL  +V  G +
Sbjct: 202 CKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQ 238



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 128/317 (40%), Gaps = 49/317 (15%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--GM---QTLEE- 224
           K  P + +   +++ LCK   VD A  + + +K    KP+  TYN L  G+   Q L E 
Sbjct: 166 KCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEA 225

Query: 225 ------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                 M++ G  PD  T+   I+  C    + EA  LF+ M  +G    +P   T+ ++
Sbjct: 226 KDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGC---APDLVTHTVL 282

Query: 279 IVALVQNDRMEECFS---------------------------------LLGHMINSGCLP 305
           +  L    ++    S                                 LL  M   G  P
Sbjct: 283 VSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPP 342

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V TY    +G+    +   AY+    M  +G  PD+V YN  +   C     D A ++ 
Sbjct: 343 NVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMV 402

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M + G  P++ TYN L+  +   G+ +   E  H M  RG   DV T+  ++ GLF  
Sbjct: 403 RYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMV 462

Query: 426 SKVEEACFLLEEVVNKG 442
            + + A   L   +++G
Sbjct: 463 GQADAAYSFLNLAMSQG 479


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 132/286 (46%), Gaps = 16/286 (5%)

Query: 207 VKPNANTYNIL--------GMQT----LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           ++PN  TYN L        G+ +    +EEM   G  PD  TYNT ID  CK   V E  
Sbjct: 6   IEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVN 65

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            LF  M+ K     +P   TY+ +I    + DR+    +L   M+    LPDV T+  ++
Sbjct: 66  RLFGEMKAK---FCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLV 122

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
           EG C AG V++A + LEE+      PD+ TY   +   C  K   EA R+  RM +  C 
Sbjct: 123 EGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQ 182

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+V  Y  LI  +   G+P  A++   EM   G   +  TY  +I G      +EEA  +
Sbjct: 183 PNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKM 242

Query: 435 LEEV-VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
           LE +  N+  K     +   +  L   G + A  +L + +++   P
Sbjct: 243 LERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTP 288



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 123/287 (42%), Gaps = 20/287 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           VD  L+++++ T        P+IN  N L+D LCK G V     +   +K K   P+  T
Sbjct: 26  VDSTLLLMEEMT---ATGCLPDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVIT 82

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L                 ++M++    PD  T+ T ++ +C A +V +A  L E + 
Sbjct: 83  YSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIV 142

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
              ++  SP   TY  ++    +  RM E   +L  M    C P+V  Y  +++  C AG
Sbjct: 143 ---ASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAG 199

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTY 380
           K   AYK LEEM   G  P+ +TY   +   C   + +EA ++  R+     C   +  Y
Sbjct: 200 KPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAY 259

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
            +++      G    A E    + + G     D Y  +I G    S+
Sbjct: 260 RVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGEMTLSR 306



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 107/254 (42%), Gaps = 3/254 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M   G  P+  TYN+ I  FC    V     L E M   G     P   TY  +I  L +
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCL---PDINTYNTLIDGLCK 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+ E   L G M    C PDV TY  ++ G C   ++  A    ++M  +   PD+VT
Sbjct: 58  TGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           +   ++  C+    D+A RL   ++   C P V TY  L+  + ++     A      M 
Sbjct: 118 FPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMA 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
           K  C  +V  Y  +ID      K   A  LLEE+V  G++     + S +      GDL 
Sbjct: 178 KGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLE 237

Query: 465 AIHKLSDHMRKFYN 478
             HK+ + + +  N
Sbjct: 238 EAHKMLERLERNEN 251



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 98/245 (40%), Gaps = 25/245 (10%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTEKI 169
           YN +ID L  T    +  RL   M       + +        F  +D + M    + + +
Sbjct: 48  YNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDML 107

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL----------- 217
           K    P++     L++  C  GLVD AE + +  V +   P+  TY  L           
Sbjct: 108 KQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMV 167

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              + L+ M +    P+   Y   ID FC A   T A  L E M   G     P A TY 
Sbjct: 168 EAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGV---QPNAITYR 224

Query: 277 IMIVALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            +I        +EE   +L  +  N  C  D+  Y+ +++G+C  G++  A + LE +  
Sbjct: 225 SLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQ 284

Query: 336 KGYPP 340
            G PP
Sbjct: 285 SGTPP 289


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 121/247 (48%), Gaps = 16/247 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL--GMQTLEE------ 224
            P +   N+L+DAL K G +  A+ +    +K  +KP+  TYN L  G   ++E      
Sbjct: 264 NPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKY 323

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M Q G  PD   Y   I+  CK +MV EA  LFE M+ K      P   TY  +I 
Sbjct: 324 VFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMI---PDIVTYNSLID 380

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +N  +E   +L   M   G  PDV +Y  +L+G+C +G++E+A +  + +  KGY  
Sbjct: 381 GLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHL 440

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++  Y   +  LC     DEAL L  +M + GC P   T++++I   FE  E D A +  
Sbjct: 441 NVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKIL 500

Query: 401 HEMDKRG 407
            EM  RG
Sbjct: 501 REMIARG 507



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y+E I     P++     L+   C  G +  A ++   +K K + PN  T+NIL      
Sbjct: 220 YSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSK 279

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++    PD FTYN+ ID +     V  A  +F  M  +G T   P 
Sbjct: 280 EGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVT---PD 336

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            + Y  MI  L +   ++E  SL   M +   +PD+ TY  +++G+C    +E A    +
Sbjct: 337 VQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCK 396

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  +G  PD+ +Y   L  LC +   ++A  ++ R++  G   +V  Y +LI+   + G
Sbjct: 397 RMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAG 456

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             D A +   +M+ +GC  D  T+ ++I  LF+  + ++A  +L E++ +GL
Sbjct: 457 FFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P++  L++L++  C    +  A ++   + K    PNA T N L             +  
Sbjct: 90  PDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYF 149

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++++  G   D  +Y T I+  CK       A L    + +G ++  P    Y  +I +
Sbjct: 150 HDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLR--KLEGHSVK-PDVVMYNTIINS 206

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +N  + +   +   MI  G  PDV TY  ++ G C+ G ++EA+  L EM  K   P+
Sbjct: 207 LCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPN 266

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + T+N  +  L       EA  L   M++    P V TYN LI  YF + E   A   ++
Sbjct: 267 VCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFY 326

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            M +RG   DV  Y  MI+GL     V+EA  L EE+ +K +
Sbjct: 327 SMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNM 368



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 132/292 (45%), Gaps = 16/292 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G       + ++++ + VKP+   YN +                  EMI  G
Sbjct: 168 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 227

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +PD  TY T I  FC    + EA  L   M+ K     +P   T+ I+I AL +  +M+
Sbjct: 228 ISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNI---NPNVCTFNILIDALSKEGKMK 284

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   LL  M+ +   PDV TY  +++G  L  +V+ A      M  +G  PD+  Y   +
Sbjct: 285 EAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMI 344

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K  DEA+ L+  M      P + TYN LI    +    + A      M ++G  
Sbjct: 345 NGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQ 404

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            DV +Y +++DGL    ++E+A  + + ++ KG  L    +   + +L   G
Sbjct: 405 PDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAG 456



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 3/216 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  PD  T +  I+ FC    +T A  +F  +  +G     P A T   +I  L     +
Sbjct: 87  GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGF---HPNAITLNTLIKGLCFRGEI 143

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++       ++  G   D  +Y  ++ G+C  G+ +   + L ++      PD+V YN  
Sbjct: 144 KKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTI 203

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC NK   +A  +Y  MI  G  P V TY  LI  +  +G    AF   +EM  +  
Sbjct: 204 INSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNI 263

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +V T+ ++ID L    K++EA  LL  ++   +K
Sbjct: 264 NPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIK 299



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 1/211 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    +  ++ +LV N       SL      +G  PD+ T   ++   C    +  A+  
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              +  +G+ P+ +T N  +K LC      +AL  + +++  G      +Y  LI+   +
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            GE         +++      DV  Y  +I+ L     + +AC +  E++ KG+      
Sbjct: 175 TGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 234

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMR-KFYNP 479
           + + +    ++G L     L + M+ K  NP
Sbjct: 235 YTTLIHGFCIMGHLKEAFSLLNEMKLKNINP 265



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 61/131 (46%)

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PP    +N  L  L +NK+    + L+ +    G  P + T ++LI+ +        AF 
Sbjct: 54  PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS 113

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +  + KRG   +  T   +I GL    ++++A +  +++V +G +L    + + +  L 
Sbjct: 114 VFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC 173

Query: 459 VIGDLGAIHKL 469
             G+  A+ +L
Sbjct: 174 KTGETKAVARL 184


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 14/313 (4%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLEEMIQM- 228
           P + A N +L AL    L      +   +++ V PN  TYNIL         LEE + + 
Sbjct: 116 PSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVV 175

Query: 229 ------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
                 G AP+  TYNT +  FC+A  +  A  +   MR +G+  + P   T+  M+  L
Sbjct: 176 GDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGN--AKPNLVTFNSMVNGL 233

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  RME    +   M+  G  PDV +Y  +L G C  G + E+     EM  +G  PD+
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VT+   +   C   N ++A+ L  +M E G   +  T+  LI  + + G  D A     E
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M K G    V  Y  +I+G     +++ A  L+ E+  K +K     + + +     +G+
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 463 LGAIHKLSDHMRK 475
           L +  +L+  M K
Sbjct: 414 LDSAFQLNQKMLK 426



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 45/308 (14%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GM 219
            +P +   N +++ LCK G ++ A  +  + V+  + P+  +YN L             +
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS----------- 268
               EM Q G  PD  T+ + I   CKA  + +A  L   MR +G  ++           
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 269 ---------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
                                 P+   Y  +I    +  RM+    L+  M      PDV
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            TY  ++ G C  G ++ A++  ++M  KG  PD +TY+  ++ LC+ K  ++A  L+  
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 458

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M+++G  P   TY  LI  + + G  + A     EM ++G   DV TY V+I+GL   ++
Sbjct: 459 MLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518

Query: 428 VEEACFLL 435
            +EA  LL
Sbjct: 519 TKEAHRLL 526



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 46/280 (16%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------G 218
           + +P++   + ++   CK G +D A  + ++ +K  V P+A TY+ L             
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +  E M+Q+G  PD FTY T ID  CK   V +A  L + M  KG     P   TY+++
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL---PDVVTYSVL 509

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV---------------LEGMCLAGKV 323
           I  L ++ R +E   LL  + +   +PD   Y  +               L+G C+ G +
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 569

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +EA K  + M ++ +  D   Y+  +   C   N  +AL  + +M+  G  P+  +   L
Sbjct: 570 KEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISL 629

Query: 384 ISMYFELG---EPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           +   FE G   E D A             QD+ T C + D
Sbjct: 630 VRGLFEEGMVVEADNAI------------QDLLTCCPLAD 657



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 35/162 (21%)

Query: 337 GYPPDI----------------------------------VTYNCFLKVLCDNKNGDEAL 362
           GY P +                                   TYN  ++ LC     +EA+
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDG 421
            + G M   GC P+  TYN L++ +   GE DGA      M + G A+ ++ T+  M++G
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           L    ++E A  + +E+V +GL      +++ L     +G L
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 274


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 18/299 (6%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GM 219
            +P +   N++LD LCK G       + +R V N ++P+  TY IL              
Sbjct: 260 ARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAA 319

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +   E+I+ G   D   YN+ +  FC+A  V EA   ++     G        +TY IMI
Sbjct: 320 RVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR----NLRTYNIMI 375

Query: 280 VALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             L  +  ++E   L   +  +  C+PD  T+  ++ G+C  G   +A+   EE    G 
Sbjct: 376 KGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK 435

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D+ +Y+  +  LC+     +A+++Y +M + GC P+   YN LIS + ++     A  
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR 495

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            + +M   GC+  V TY  +IDGL    K +EA  +  E+V  G       + S +  L
Sbjct: 496 IYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGL 554



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK--RVKNK---VKPNANTYNIL--------GMQT 221
           P+      L+  LC+ G  + A TI +  RV  K   V   ++  N L         ++ 
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKV 461

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+M + G  P++  YN  I  FC+    ++A  ++  M   G    SPT  TY  +I  
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGC---SPTVITYNTLIDG 518

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + ++ +E  S+   M+ +G  PD++TY  ++ G+    K+++A    +++  KG   D
Sbjct: 519 LCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVD 578

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ +N  +  LC     DEAL ++  M E   C P++ TYN L+   +E G  D A   W
Sbjct: 579 VMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLW 638

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             + + G   D+ +Y   I GL  C ++ E   LL+EV+++G+
Sbjct: 639 TSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGI 681



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 18/279 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL------------GMQTLEEMI 226
           N+++  L   G+VD A  +   ++  V   P+  T+  L                 EE  
Sbjct: 372 NIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEAR 431

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G   D F+Y++ I+  C    + +A  ++E M   G     P +  Y  +I    Q  
Sbjct: 432 VSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGC---KPNSHIYNALISGFCQVY 488

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  +   +   M ++GC P V TY  +++G+C A K +EA     EM   G+ PDI TY 
Sbjct: 489 RTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYG 548

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DK 405
             ++ L  +K  D+AL ++ +++  G    V  +N+LI      G+ D A   + +M +K
Sbjct: 549 SLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEK 608

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + C  ++ TY  ++DGL++   +++A  L   +   GL+
Sbjct: 609 KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLE 647



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 125/282 (44%), Gaps = 24/282 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-----KVKPNANTYNIL----------- 217
            P I + N LLDA  +      A+     + +     ++ PN  TYNI+           
Sbjct: 116 NPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLD 175

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM-RTKGSTISSPTAKTY 275
             +   + + +   APD  TY+T +    K   +  A DL + M R++      P    Y
Sbjct: 176 RAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSR----VQPDVVCY 231

Query: 276 AIMIVALVQNDRMEECFSLLGHMI-NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
             ++    +    E+   +   ++ + G  P+++TY  +L+G+C  G+ +E  +  E M 
Sbjct: 232 NALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMV 291

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
                PD++TY   +  LC + + D A R+Y  +I+ G       YN L+  + + G   
Sbjct: 292 ANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQ 351

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
            A++ W      G  +++ TY +MI GLFD   V+EA  L +
Sbjct: 352 EAWKFWDSAGFAGL-RNLRTYNIMIKGLFDSGMVDEAIELWD 392



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 52/267 (19%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           Q ++ + + +++ LC  G LVD  +   K  K+  KPN++ YN L             ++
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR 495

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M   G +P   TYNT ID  CKA    EA+ +   M   G T   P   TY  +I 
Sbjct: 496 IYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT---PDITTYGSLIR 552

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---- 336
            L  + ++++  S+   ++  G   DV  +  ++ G+C AGKV+EA     +M  K    
Sbjct: 553 GLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCP 612

Query: 337 --------------------------------GYPPDIVTYNCFLKVLCDNKNGDEALRL 364
                                           G  PDI++YN  +K LC      E ++L
Sbjct: 613 PNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQL 672

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELG 391
              ++  G  P+V T+N+L+    + G
Sbjct: 673 LDEVLSRGIIPTVITWNILVRAVIKYG 699



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 4/247 (1%)

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK--GSTISSPTAKTYAIMIVALVQN 285
           +G  P   ++N  +D F +AR  ++A   F  +     G  I+ P  +TY I++ +L   
Sbjct: 113 LGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIA-PNLQTYNIVLRSLCAR 171

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             ++   +L   +      PD  TY  ++ G+    +++ A   L+EM      PD+V Y
Sbjct: 172 GDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCY 231

Query: 346 NCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           N  L         ++ +R++ +++ + G  P++ TYN+++    + G      E W  M 
Sbjct: 232 NALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMV 291

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
                 DV TY ++I GL     V+ A  +  E++  GL +    ++S +      G + 
Sbjct: 292 ANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQ 351

Query: 465 AIHKLSD 471
              K  D
Sbjct: 352 EAWKFWD 358


>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 190/432 (43%), Gaps = 47/432 (10%)

Query: 47  SVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAG 106
           ++S   +L   II N+ +   +E+ L    + ++ + V   L+        A +FF W+G
Sbjct: 54  NLSPKVRLLCEIIANTPS-STVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSG 112

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNK-------VFVPVDVLL 159
           HQ N  H P ++NL++D+L       K F L  +M D +K   K        F  +    
Sbjct: 113 HQLNDNHSPYSWNLVVDML------GKNF-LFDAMWDAVKSMKKQGLLSLATFASIFSSY 165

Query: 160 MILKQYTEKI-------KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN 212
           +I  +  E I       +     +I ALN LL A+C+ G    A    + V+  ++P+A+
Sbjct: 166 VIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDAD 225

Query: 213 TYNIL------------GMQTLEEMI-QMGHAPDNFTYNTAIDTFCKARM-----VTEAA 254
           TY IL              QT +EM+  +G  P N +   A D+F  A +       EA 
Sbjct: 226 TYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVS---AYDSFLNALLHGPDGRREAM 282

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEV 313
             FE MR +     SP  + Y I +   V+    +    L   M++   C PD   Y  +
Sbjct: 283 KFFEIMRDRQC---SPGMRFYRIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSM 339

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           +   C    +  A   L+EM   G  PD  TYN   + L   +  +EA  ++  M++  C
Sbjct: 340 IALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNEC 399

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P +   N  + +Y +LG+   A + W  + +   +   +T  +++ GL D  ++ EA  
Sbjct: 400 VPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLLVTGLRDHDRIPEAVK 459

Query: 434 LLEEVVNKGLKL 445
             ++++ +G+KL
Sbjct: 460 YAKDMIVRGIKL 471


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 21/282 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           P+    N+L+D LCK G +  A+ I K  ++  V+PN  TY+ L              + 
Sbjct: 8   PDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKV 67

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              MI  G  PD  +YN  I+  CKA+ + EA  +F+ M  +G     P   TY  ++  
Sbjct: 68  FNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLI---PNTATYNTLLGG 124

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +         L   M   GC PD+ TY   L G+   G +++A +   EM N    PD
Sbjct: 125 FWKQK-----IQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPD 179

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V YN  +  +C +   ++A  L+ ++   G  P V+++  +IS     G  D A++ + 
Sbjct: 180 LVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFR 239

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M++ GC  D  +Y V++ G    +    A  L +E+ ++G 
Sbjct: 240 QMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGF 281



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 8/244 (3%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  T+N  +DT CK   ++EA  + + M  KG     P   TY+ ++   +  +R+ E 
Sbjct: 8   PDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGV---EPNTVTYSSLMNGYLLQNRVFEA 64

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +   MI  GC+PDV +Y  ++ G C A +++EA +  +EM  +G  P+  TYN  L  
Sbjct: 65  RKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGG 124

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
               K     ++L+  M   GC P + TY++ +    + G  D A E + EM       D
Sbjct: 125 FWKQK-----IQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPD 179

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           +  Y ++ID +    K+E+A  L  ++  KGL    R + S +  L   G L   +K   
Sbjct: 180 LVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFR 239

Query: 472 HMRK 475
            M +
Sbjct: 240 QMER 243



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 5/176 (2%)

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
           S I  P A T+ I++  L +  ++ E   ++  MI  G  P+  TY  ++ G  L  +V 
Sbjct: 3   SFIIMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVF 62

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EA K    M  +G  PD+++YN  +   C  +  DEA +++  M   G  P+  TYN L+
Sbjct: 63  EARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLL 122

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             +++        + + +M  +GC+ D+ TY + + GL     +++A  L  E+ N
Sbjct: 123 GGFWK-----QKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQN 173



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 89/226 (39%), Gaps = 46/226 (20%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------GMQTLEEMI 226
           P++ + N+L++  CK   +D A+ I   +  + + PN  TYN L        +Q  ++M 
Sbjct: 78  PDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWKQKIQLFKDMH 137

Query: 227 QMGHAPDNFTY-----------------------------------NTAIDTFCKARMVT 251
             G +PD  TY                                   N  ID  CK+  + 
Sbjct: 138 AQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLE 197

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A +LF  +  KG     P  +++  +I  L +   ++E +     M   GC PD  +Y 
Sbjct: 198 DARELFLKLHVKGLL---PDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYN 254

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
            ++ G         A +  +EM ++G+  D +T      +L  + N
Sbjct: 255 VIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSKDDN 300


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 127/263 (48%), Gaps = 12/263 (4%)

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE--------MIQM 228
           + ++ LL  L   GL+D A     RV+  +V PN  T N + +    E        + + 
Sbjct: 129 SVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQ 188

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
             AP+ FT+N  ID  CK   + EA  L   M+  G    SP   TY  +I    +   +
Sbjct: 189 LPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGC---SPDVVTYNSLIDGYGKCGEL 245

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           EE   L+G M   GC PDV TY  ++   C  G++E AY +  EM  +G   ++VT++ F
Sbjct: 246 EEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTF 305

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C N    EA++L+ +M   G  P+  TY  L+    + G  D A    +EM ++G 
Sbjct: 306 VDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGV 365

Query: 409 AQDVDTYCVMIDGLFDCSKVEEA 431
             +V TY V++DGL    KV EA
Sbjct: 366 PLNVVTYTVLVDGLCKEGKVAEA 388



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 126/275 (45%), Gaps = 16/275 (5%)

Query: 184 LDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGH 230
           +DA CK G+V  A  +  +++ K +KPN  TY  L             +    EM+Q G 
Sbjct: 306 VDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGV 365

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
             +  TY   +D  CK   V EA D+F  M   G   +      Y  +I         E 
Sbjct: 366 PLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANE---LLYTTLIHGHFVYKNSER 422

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             SLL  M + G   DVS Y  ++ G+C   K++EA   L +M   G  P+ V Y   + 
Sbjct: 423 ALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMD 482

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
                +   EA+ L  +M++ G  P++ TY  L+    + G  D A   +++M   G   
Sbjct: 483 ACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEP 542

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +V  Y  ++DGL    ++++A  LL+E+++KG+ L
Sbjct: 543 NVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSL 577



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 144/351 (41%), Gaps = 51/351 (14%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------ 217
           +   P++   N L+D   KCG ++  E +   ++    +P+  TYN L            
Sbjct: 223 IGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMER 282

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
                 EM + G   +  T++T +D FCK  MV EA  LF  MR KG     P   TY  
Sbjct: 283 AYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGM---KPNEVTYTC 339

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA----------- 326
           ++    +  R+++   L   M+  G   +V TY  +++G+C  GKV EA           
Sbjct: 340 LVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAG 399

Query: 327 -----------------YK-------FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
                            YK        L EM +KG   D+  Y   +  LC+ +  DEA 
Sbjct: 400 IRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAK 459

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L  +M E G  P+   Y  ++   F+  +   A     +M   G   ++ TYC ++DGL
Sbjct: 460 SLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGL 519

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                ++EA     ++V+ GL+   + + + +  L   G L     L D M
Sbjct: 520 CKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEM 570



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 127/299 (42%), Gaps = 25/299 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P +   N+++D LCK G +  A  +  R+K                       +G +PD 
Sbjct: 192 PNVFTFNIMIDFLCKEGDLAEARALLARMK----------------------AIGCSPDV 229

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TYN+ ID + K   + E   L   MR  G     P   TY  ++    +  RME  +S 
Sbjct: 230 VTYNSLIDGYGKCGELEEVEKLVGEMRGCGC---RPDVVTYNALVNCFCKFGRMERAYSY 286

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M   G + +V T+   ++  C  G V EA K   +M  KG  P+ VTY C +   C 
Sbjct: 287 FAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCK 346

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               D+AL L   M++ G   +V TY +L+    + G+   A + +  M++ G   +   
Sbjct: 347 AGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELL 406

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           Y  +I G F     E A  LL E+ +KG++L    + + +  L  +  L     L + M
Sbjct: 407 YTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKM 465



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 7/214 (3%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+  T N  +    + R    A  LFE        + +P   T+ IMI  L +   + E 
Sbjct: 161 PNTRTCNHILLCLARERSSELAWRLFE-------QLPAPNVFTFNIMIDFLCKEGDLAEA 213

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            +LL  M   GC PDV TY  +++G    G++EE  K + EM   G  PD+VTYN  +  
Sbjct: 214 RALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNC 273

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C     + A   +  M   G   +V T++  +  + + G    A + + +M  +G   +
Sbjct: 274 FCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPN 333

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             TY  ++DG     ++++A  L  E+V +G+ L
Sbjct: 334 EVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPL 367



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 16/275 (5%)

Query: 182 LLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQM 228
           +L+D LCK G V  AE + + + +  ++ N   Y  L             +  L EM   
Sbjct: 374 VLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDK 433

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G   D   Y   I   C  + + EA  L   M   G     P    Y  ++ A  +  + 
Sbjct: 434 GMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGL---KPNNVIYTNIMDACFKARKE 490

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E  +LL  M++SG  P++ TY  +++G+C AG ++EA     +M + G  P++  Y   
Sbjct: 491 SEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTAL 550

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC N   D+A+ L   MI+ G          L+  + + G    AF    +M   G 
Sbjct: 551 VDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGL 610

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             D+  Y   + G  + + ++EA  +L E++  G+
Sbjct: 611 QLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGI 645



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTY-NIL-----------GMQTLEEMIQMG 229
           L+  LC    +D A+++  ++    +KPN   Y NI+            +  L++M+  G
Sbjct: 445 LIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSG 504

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P+  TY   +D  CKA  + EA   F  M   G     P  + Y  ++  L +N R++
Sbjct: 505 FRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGL---EPNVQAYTALVDGLCKNGRLD 561

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   LL  MI+ G   D      +++G    G +++A+    +M N G   D+  Y CF+
Sbjct: 562 KAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFV 621

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
              C+     EA  +   MIE G  P    YN LI+   +LG  + A    +EM+
Sbjct: 622 WGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 3/217 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M + G  P+N  Y   +D   KAR  +EA  L + M   G     P   TY  ++  
Sbjct: 462 LNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGF---RPNIVTYCALVDG 518

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   ++E  S    M++ G  P+V  Y  +++G+C  G++++A   L+EM +KG   D
Sbjct: 519 LCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLD 578

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V     +       N  +A  L  +MI  G    +  Y   +  +  L     A E   
Sbjct: 579 NVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLS 638

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           EM + G   D   Y  +I+       +EEA  L  E+
Sbjct: 639 EMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEM 675



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 305 PDVSTYKEVLEGMCLAGK--VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           P+  T   +L  +CLA +   E A++  E++      P++ T+N  +  LC   +  EA 
Sbjct: 161 PNTRTCNHIL--LCLARERSSELAWRLFEQLP----APNVFTFNIMIDFLCKEGDLAEAR 214

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L  RM  +GC P V TYN LI  Y + GE +   +   EM   GC  DV TY  +++  
Sbjct: 215 ALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCF 274

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
               ++E A     E+  +G+      F +++      G +    KL   MR
Sbjct: 275 CKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMR 326



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           +  + + + +  +P + A   L+D LCK G +D A  +                      
Sbjct: 529 ISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLL---------------------- 566

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EMI  G + DN    + +D   K   + +A  L   M   G  +       Y   +  
Sbjct: 567 LDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLD---LYGYTCFVWG 623

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
               + ++E   +L  MI +G  PD   Y  ++      G +EEA     EM
Sbjct: 624 FCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEM 675


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 26/270 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+    N+L+D LCK G V+ A                          +EM++ G  PD 
Sbjct: 194 PDTITYNVLIDGLCKSGDVEAARAF----------------------FDEMLEAGCKPDV 231

Query: 235 FTYNTAIDTFCKARMVTEAA-DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           +TYN  I  FCKA     A+  L +     G TI      TY  ++  L +N ++EE  +
Sbjct: 232 YTYNILISGFCKAGNTDAASHSLAQETTINGCTID---IHTYTAIVDWLAKNKKIEEAVA 288

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L+  +  +GC P ++TY  +L G+C  G++EEA   L ++ + G  PD+VTY   +  L 
Sbjct: 289 LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 348

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
             K   EA +L+  M   G       Y  LI    + G+   A   +  M   GC  DV 
Sbjct: 349 KEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVV 408

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           T   MIDGL    ++  A  + + +  +GL
Sbjct: 409 TLSTMIDGLSKAGRIGAAVRIFKSMEARGL 438



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 153/347 (44%), Gaps = 49/347 (14%)

Query: 97  IAFRFFMWAGHQDNYAH----EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF 152
           I    F  AG+ D  +H    E       IDI + T           +++D++ +N K+ 
Sbjct: 236 ILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYT-----------AIVDWLAKNKKIE 284

Query: 153 VPVDVLLMILKQYTEKIKVK-TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211
             V ++        EKI      P I   N LL+ LCK G ++ A               
Sbjct: 285 EAVALM--------EKITANGCTPTIATYNALLNGLCKMGRLEEA--------------- 321

Query: 212 NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +++  G  PD  TY + ID   K +   EA  LF+ M  +G  + +  
Sbjct: 322 -------IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVC 374

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I  L+Q  ++ +  S+   M + GC+PDV T   +++G+  AG++  A +  +
Sbjct: 375 ---YTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 431

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  +G  P+ V Y+  +  LC  +  D AL +  +M +  C P   TYN+LI    + G
Sbjct: 432 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 491

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           + + A   + EM + GC  DV TY ++I G       + AC + +++
Sbjct: 492 DVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 143/340 (42%), Gaps = 64/340 (18%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N LL+ LCK G ++ A                      +  L +++  G  PD 
Sbjct: 19  PTIATYNALLNGLCKMGRLEEA----------------------IDLLRKIVDNGCTPDV 56

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY + ID   K +   EA  LF+ M  +G  + +     Y  +I  L+Q  ++ +  S+
Sbjct: 57  VTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVC---YTALIRELLQTGKIPQASSV 113

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--------------- 339
              M + GC+PDV T   +++G+  AG++  A +  + M  +G                 
Sbjct: 114 YKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 173

Query: 340 --------------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
                               PD +TYN  +  LC + + + A   +  M+E GC P V T
Sbjct: 174 ARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 233

Query: 380 YNMLISMYFELGEPDGAFETW-HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           YN+LIS + + G  D A  +   E    GC  D+ TY  ++D L    K+EEA  L+E++
Sbjct: 234 YNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKI 293

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478
              G       +++ L  L  +G L    +  D +RK  +
Sbjct: 294 TANGCTPTIATYNALLNGLCKMGRL---EEAIDLLRKIVD 330



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 138/303 (45%), Gaps = 30/303 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++  L+ ++D L K G +  A  I K ++ +                      G AP+ 
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR----------------------GLAPNE 161

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  I   CKAR +  A ++   M+       +P   TY ++I  L ++  +E   + 
Sbjct: 162 VVYSALIHGLCKARKMDCALEMLAQMK---KAFCTPDTITYNVLIDGLCKSGDVEAARAF 218

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA-YKFLEEMGNKGYPPDIVTYNCFLKVLC 353
              M+ +GC PDV TY  ++ G C AG  + A +   +E    G   DI TY   +  L 
Sbjct: 219 FDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLA 278

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            NK  +EA+ L  ++   GC P++ TYN L++   ++G  + A +   ++   GC  DV 
Sbjct: 279 KNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV 338

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHK-L 469
           TY  +IDGL    +  EA  L +E+  +GL L    Y      L+Q   I    +++K +
Sbjct: 339 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 398

Query: 470 SDH 472
           + H
Sbjct: 399 TSH 401



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 3/224 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           + EA  L E +   G T   PT  TY  ++  L +  R+EE   LL  ++++GC PDV T
Sbjct: 2   IEEAVALMEKITANGCT---PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 58

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +++G+    +  EAYK  +EM  +G   D V Y   ++ L       +A  +Y  M 
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 118

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             GC P V T + +I    + G    A   +  M+ RG A +   Y  +I GL    K++
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 178

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            A  +L ++           ++  +  L   GD+ A     D M
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEM 222



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++EE  +L+  +  +GC P ++TY  +L G+C  G++EEA   L ++ + G  PD+VTY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  L   K   EA +L+  M   G       Y  LI    + G+   A   +  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           GC  DV T   MIDGL    ++  A  + + +  +GL
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 157


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 149/315 (47%), Gaps = 16/315 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           + +I++L++L++  C    VD+  ++  ++ K  ++P+  T+  L             M 
Sbjct: 94  EQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMM 153

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++M+  G  P+ +TYN  I++  K+    EA    + M   G     P    Y+ +I 
Sbjct: 154 LYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCV---PNVVNYSTLID 210

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 +M+E  S+   M++ GC P+V TY  ++ G C   ++EEA + L+E   KG  P
Sbjct: 211 GYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVP 270

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DIVT+   +  LC       A +L+  +   G  P++ TY +L+    + G  + AF  +
Sbjct: 271 DIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALF 330

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM +     ++  Y ++ID L  C K+++   L   ++++GLK     + + +  L   
Sbjct: 331 QEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKE 390

Query: 461 GDLGAIHKLSDHMRK 475
           G +   HKL   M +
Sbjct: 391 GLIIEAHKLFRKMEE 405



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 51/323 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL---------- 217
           +K+  +P I     LL+ LC  G +D    +    +   ++PN  TYN++          
Sbjct: 124 LKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKA 183

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  L++M ++G  P+   Y+T ID +C    + EA  +F+ M +KG T   P   TY
Sbjct: 184 NEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCT---PNVYTY 240

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-------------- 321
             ++    + +R+EE   LL   +  G +PD+ T+  ++ G+C AG              
Sbjct: 241 TSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICA 300

Query: 322 ---------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                                 +EEA+   +EM      P++V Y   +  LC      +
Sbjct: 301 HGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKD 360

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
              L+ R+I+ G  P+V TY  L+    + G    A + + +M++ GC  D   Y V+I 
Sbjct: 361 GKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQ 420

Query: 421 GLFDCSKVEEACFLLEEVVNKGL 443
           G         A  L+EE+VN+G 
Sbjct: 421 GFLQHKDPSMARQLVEEMVNRGF 443



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 16/264 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           KV   P +   + L+D  C  G +D A ++   + +K   PN  TY  L           
Sbjct: 195 KVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIE 254

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +Q L+E ++ G  PD  T+ T I   C+A     A  LF ++   G T   P   TY 
Sbjct: 255 EAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHT---PNIMTYG 311

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++  L ++  +EE F+L   M  S   P++  Y  +++ +C  GK+++  +    + ++
Sbjct: 312 VLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDE 371

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  P++ TY   +  LC      EA +L+ +M E GC P    YN++I  + +  +P  A
Sbjct: 372 GLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMA 431

Query: 397 FETWHEMDKRGCAQDVDTYCVMID 420
            +   EM  RG + D  T  ++ D
Sbjct: 432 RQLVEEMVNRGFSADAATRALLND 455


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 143/320 (44%), Gaps = 22/320 (6%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP----NANTYNIL-------- 217
           K +  P    LN ++  LC  G V  A     R K  V P    NA TY+ L        
Sbjct: 274 KERVTPNAVTLNTIVGGLCWVGRVGAALEFF-REKRTVWPEARGNAVTYSTLVGAFLHTN 332

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                M+   EM+  G++PD   Y T I    +A  + +A  +   M+  G  +    AK
Sbjct: 333 NVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLD---AK 389

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y I+I    +  R+ E + LLG M  +G  PDV TY  +L G+C AG      + L +M
Sbjct: 390 AYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKM 449

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            + G  P +VT+   +   C     DEALR++  M E G  P+   YN LI    +  + 
Sbjct: 450 IDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDT 509

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDS 452
             A E + EM ++    +V T+  ++ GL D +  E+A F L +++ +G   P Y   D 
Sbjct: 510 SLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKA-FELMDLMREGRCTPDYVTIDI 568

Query: 453 YLMQLSVIGDLGAIHKLSDH 472
            +  L VIG+   +     H
Sbjct: 569 LMEWLPVIGETDRLKHFMQH 588



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 128/318 (40%), Gaps = 22/318 (6%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA-- 231
           P+ +A N LLDAL + G L    +         V+PN  TY IL ++ L +  ++G A  
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGIL-VKGLCKAGRVGDALS 193

Query: 232 -------------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
                        PD    N  +D  CK   + +A    E  R +     +P   TY  +
Sbjct: 194 VLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVE-ERMRSVHGCAPNTVTYNCL 252

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             A  +   +     L+  M      P+  T   ++ G+C  G+V  A +F  E     +
Sbjct: 253 AHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREK-RTVW 311

Query: 339 PP---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           P    + VTY+  +       N   A+ L+  M++ G  P    Y  +IS   + G  D 
Sbjct: 312 PEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDD 371

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A+     M K G   D   Y ++I G     ++ EA  LL E+   GL+     +++ L 
Sbjct: 372 AWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLS 431

Query: 456 QLSVIGDLGAIHKLSDHM 473
            L   GD  A+ +L   M
Sbjct: 432 GLCKAGDFLAVDELLGKM 449


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 149/318 (46%), Gaps = 55/318 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETIC---KRVKNKVKPNANTYNIL------------G 218
           +P + + ++++D LCK G  ++ E IC   + V   V+PN  T+++L             
Sbjct: 234 RPNVISYSIIIDGLCKVG--NWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKA 291

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + LE MIQ+G  P+ FTY + I  FC    +  A +LF  M +KG     P   +Y ++
Sbjct: 292 KKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGY---EPDVISYNML 348

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK---------- 328
           I    +  ++EE   L   M++ G  PDV T   +L+ + LAGKV++A +          
Sbjct: 349 INGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAM 408

Query: 329 ---------FLEEMGNKGY----------------PPDIVTYNCFLKVLCDNKNGDEALR 363
                    FL+ +   GY                  DI T+ C +  LC     + A  
Sbjct: 409 PKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWE 468

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L+ ++ E G  P    Y+ +I  + + G+ D A   + +M++ GC+ D+ TY +++ G +
Sbjct: 469 LFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFY 528

Query: 424 DCSKVEEACFLLEEVVNK 441
           + +K+E+   LL  ++ K
Sbjct: 529 ESNKLEKVVQLLHRMIEK 546



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 19/301 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           K +    K+   P +     L+  LC  G ++ A    + + N   P    +N       
Sbjct: 182 KLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPY--VFNC------ 233

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
                    P+  +Y+  ID  CK     EA  LF  M  +G     P   T++++I  L
Sbjct: 234 --------RPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGV---QPNVVTFSVLIDML 282

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  ++ +   LL  MI  G +P++ TY  +++G CL G +  A +    M +KGY PD+
Sbjct: 283 CKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDV 342

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           ++YN  +   C     +EA++L+  M+ VG WP V+T  +L+   F  G+ D A E +  
Sbjct: 343 ISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRV 402

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           +      +D+   C+ +DGL     + EA  L  E+ +  +KL    F   +  L   G 
Sbjct: 403 IKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGK 462

Query: 463 L 463
           L
Sbjct: 463 L 463



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 31/275 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++  LN+L++ LC                     N N  N  G+  +  +++ G+ PD 
Sbjct: 124 PDLLTLNILINCLC---------------------NVNRIN-EGLAAMAGIMRRGYIPDV 161

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T+ T I   C    + EA  LF  M+  G T   P   TY  +I  L     +      
Sbjct: 162 VTFTTLIKGLCVEHRIIEATKLFMRMQKLGCT---PNVVTYGTLIKGLCALGNINIALKW 218

Query: 295 LGHMINS------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
              M+N        C P+V +Y  +++G+C  G  EEA     EM ++G  P++VT++  
Sbjct: 219 HQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVL 278

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           + +LC      +A +L   MI++G  P++ TY  LI  +  +G+ + A E +  M  +G 
Sbjct: 279 IDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGY 338

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             DV +Y ++I+G     KVEEA  L  E+++ G+
Sbjct: 339 EPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGM 373



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 45/317 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           + E +    QP +   ++L+D LCK G V  A+ + +  ++  + PN  TY  L      
Sbjct: 260 FNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCL 319

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM---------RT 262
                   +    M   G+ PD  +YN  I+ +CK   V EA  LF  M         +T
Sbjct: 320 VGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKT 379

Query: 263 KGSTISS--------------PTAKTYA---------IMIVALVQNDRMEECFSLLGHMI 299
            G  + +                 K YA         I +  L +N  + E   L   + 
Sbjct: 380 SGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELE 439

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
           +     D+ T+  +++G+C AGK+E A++  E++  +G  PD + Y+  +   C     D
Sbjct: 440 SYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVD 499

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +A  L+ +M E GC P + TY++L+  ++E  + +   +  H M ++    D   Y ++ 
Sbjct: 500 KANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVE 559

Query: 420 DGLFDCSKVEEACFLLE 436
           D +    K +E   LL+
Sbjct: 560 DMVCKDEKYKEWLDLLQ 576



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 19/225 (8%)

Query: 231 APDNFTYNTAIDTF---CK--ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +P+  ++   I  F   CK  +  VT+A   F+ M          +  ++  ++  L + 
Sbjct: 53  SPERISFQHGIPMFLHKCKTGSISVTQAHQFFDLMMR--------SIFSFNRLLAGLAKI 104

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +   + FSL   M  +G  PD+ T   ++  +C   ++ E    +  +  +GY PD+VT+
Sbjct: 105 EHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTF 164

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              +K LC      EA +L+ RM ++GC P+V TY  LI     LG  + A +   EM  
Sbjct: 165 TTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLN 224

Query: 406 R------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
                   C  +V +Y ++IDGL      EEA  L  E+V++G++
Sbjct: 225 DTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQ 269



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 16/219 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN----------- 210
           +K + E + V   P++    +LL AL   G VD A+ + + +K    P            
Sbjct: 362 MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 421

Query: 211 --ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
              N Y    M+   E+       D  T+   ID  CKA  +  A +LFE +  +G    
Sbjct: 422 LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGI--- 478

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P A  Y+ MI    +  ++++   L   M  +GC PD+ TY  ++ G   + K+E+  +
Sbjct: 479 QPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQ 538

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            L  M  K   PD   Y     ++C ++   E L L  R
Sbjct: 539 LLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQR 577



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 5/159 (3%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V +A++F + M        I ++N  L  L   ++  +   LY +M   G WP + T N+
Sbjct: 77  VTQAHQFFDLMMR-----SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNI 131

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+    +   +        + +RG   DV T+  +I GL    ++ EA  L   +   G
Sbjct: 132 LINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLG 191

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481
                  + + +  L  +G++    K    M    +P +
Sbjct: 192 CTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYV 230


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P +   N+L+DALCK G V  A+++    +K  VKP+  TY+ L                
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M  MG  PD  TY   I+ FCK +MV EA +LF+ M  K      P   TY+ +I  
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMV---PGIVTYSSLIDG 383

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+   + L+  M + G   DV TY  +++G+C  G ++ A     +M ++   P+
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I T+   L  LC      +A  ++  ++  G   +V TYN++I+ + + G  + A     
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLS 503

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M+  GC  +  T+  +I  LF   + ++A  LL +++ +GL
Sbjct: 504 KMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 140/319 (43%), Gaps = 16/319 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++  LN+L++  C  G + +  ++  ++ K    P+  T N L             + 
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++++  G   +  +Y T I+  CK   + +     +F+R     ++ P    Y  +I 
Sbjct: 151 FHDKLLAQGFQLNQVSYATLINGVCK---IGDTRAAIKFLRKIDGRLTKPDVVMYNTIID 207

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A+ +   + E + L   M   G   DV TY  ++ G C+ GK++EA   L EM  K   P
Sbjct: 208 AMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINP 267

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TYN  +  LC      EA  +   M++    P V TY+ L+  YF + E   A   +
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M   G   DV TY ++I+G      V+EA  L +E+  K +      + S +  L   
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 461 GDLGAIHKLSDHMRKFYNP 479
           G +  +  L D MR    P
Sbjct: 388 GRISYVWDLIDEMRDRGQP 406



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 125/272 (45%), Gaps = 25/272 (9%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
           T+P++   N ++DA+CK  LV  A  +                        EM   G + 
Sbjct: 195 TKPDVVMYNTIIDAMCKYQLVSEAYGL----------------------FSEMAVKGISA 232

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  TYNT I  FC    + EA  L   M  K  TI+ P   TY I++ AL +  +++E  
Sbjct: 233 DVVTYNTLIYGFCIVGKLKEAIGLLNEMVLK--TIN-PNVYTYNILVDALCKEGKVKEAK 289

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           S+L  M+ +   PDV TY  +++G  L  +V++A      M   G  PD+ TY   +   
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C NK  DEAL L+  M +    P + TY+ LI    + G     ++   EM  RG   DV
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADV 409

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            TY  +IDGL     ++ A  L  ++ ++ ++
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 3/220 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M+ M H P    +N  +D+F K +  + A  L   +  KG     P   T  I+I  
Sbjct: 47  FNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKG---IQPDLITLNILINC 103

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                ++   FS+L  ++  G  PD  T   +++G+CL G+V++A  F +++  +G+  +
Sbjct: 104 FCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLN 163

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V+Y   +  +C   +   A++   ++      P V  YN +I    +      A+  + 
Sbjct: 164 QVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFS 223

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           EM  +G + DV TY  +I G     K++EA  LL E+V K
Sbjct: 224 EMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLK 263



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 43/211 (20%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           HQ N     + Y+ +ID L     K+ +   V  ++D M+   +   P DV+      Y+
Sbjct: 366 HQKNMVPGIVTYSSLIDGLC----KSGRISYVWDLIDEMRDRGQ---PADVI-----TYS 413

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
                           L+D LCK G +D A  +  ++K++ ++PN  T+ IL        
Sbjct: 414 S---------------LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGG 458

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  ++++  G+  + +TYN  I+  CK  ++ EA  +   M   G     P A 
Sbjct: 459 RLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCI---PNAF 515

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           T+  +I+AL + D  ++   LL  MI  G L
Sbjct: 516 TFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V++A      M    + P I+ +N  L      K+   A+ L  R+   G  P + T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ +  +G+    F    ++ KRG   D  T   +I GL    +V++A    ++++ +G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 443 LKLPYRKFDSYLMQLSVIGDLGA 465
            +L    + + +  +  IGD  A
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRA 182


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 129/282 (45%), Gaps = 25/282 (8%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           L+   E ++++  P   A++ L++ L K G V+ A  + KRV                  
Sbjct: 317 LEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVA----------------- 359

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                + G +P+ F YN  ID+ CK R   EA  LF+ M   G     P   TY+I+I  
Sbjct: 360 -----EFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRM---GKIGLCPNDVTYSILIDM 411

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +++   S LG MI+ G  P V  Y  ++ G C  G +  A   + EM NK   P 
Sbjct: 412 FCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPT 471

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +   C     ++ALRLY  M   G  PS+ T+  L+S  F  G    A + + 
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFT 531

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM +     +  TY VMI+G  +   + +A   L E++ KG+
Sbjct: 532 EMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGI 573



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 146/338 (43%), Gaps = 24/338 (7%)

Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINAL 180
           MID +   ++   +   V S+++ +++  KV    +  L ++K+  E       P I   
Sbjct: 319 MIDEMLRLRFSPSE-AAVSSLVEGLRKRGKV----EEALNLVKRVAE---FGVSPNIFVY 370

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D+LCK    D AE +  R+ K  + PN  TY+IL             +  L EMI 
Sbjct: 371 NALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMID 430

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           MG  P  + YN+ I+  CK   ++ A  L   M  K      PT  TY  ++       +
Sbjct: 431 MGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKL---EPTVVTYTSLMGGYCSKGK 487

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + +   L   M   G +P + T+  +L G+  AG + +A K   EM      P+ VTYN 
Sbjct: 488 INKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNV 547

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            ++  C+  N  +A      MIE G  P   +Y  LI      G+   A      + K  
Sbjct: 548 MIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN 607

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           C  +   Y  ++ G     K+EEA  + +++  +G+ L
Sbjct: 608 CELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDL 645



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 149/394 (37%), Gaps = 84/394 (21%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL--- 217
           L+ Y E       P I     LL  L + GL+ D  +   +  +  VKPN  TYN++   
Sbjct: 492 LRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEG 551

Query: 218 ---------GMQTLEEMIQMGHAPDNFT-------------------------------- 236
                      + L EMI+ G  PD ++                                
Sbjct: 552 YCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELN 611

Query: 237 ---YNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------------------- 268
              Y   +  FC+   + EA  + + M  +G  +                          
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLK 671

Query: 269 -------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
                   P    Y  MI A  +    +E F +   MIN GC+P+  TY  V+ G+C AG
Sbjct: 672 EMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAG 731

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD--EALRLYGRMIEVGCWPSVQT 379
            V EA     +M      P+ VTY CFL +L     GD  +A+ L+  +++ G   +  T
Sbjct: 732 FVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGV-GDMKKAVELHNAILK-GLLANTAT 789

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YNMLI  +   G  + A E    M   G + D  TY  MI  L   + V++A  L   + 
Sbjct: 790 YNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMT 849

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            KG++     +++ +    V G++G   +L + M
Sbjct: 850 EKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 125/281 (44%), Gaps = 17/281 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+D LCK   V  A  I K +  K +KP+  TY  L            G++ ++EM++
Sbjct: 266 NVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLR 325

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +  +P     ++ ++   K   V EA +L + +   G    SP    Y  +I +L +   
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGV---SPNIFVYNALIDSLCKGRN 382

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E   L   M   G  P+  TY  +++  C  GK++ A  FL EM + G  P +  YN 
Sbjct: 383 FDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNS 442

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C   +   A  L   MI     P+V TY  L+  Y   G+ + A   +HEM  +G
Sbjct: 443 LINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
               + T+  ++ GLF    + +A  L  E+    +K P R
Sbjct: 503 IVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVK-PNR 542



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 24/318 (7%)

Query: 141 MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETI 199
           ++ +  R+ +V   V V  M++       KV   PE+  L+ LL  L K      A E  
Sbjct: 162 LIQHYVRSRRVLDGVLVFKMMMT------KVSLLPEVRTLSALLHGLVKFRHFGLAMELF 215

Query: 200 CKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFT-------------YNTAIDTFCK 246
              +   ++P+   Y  + +++L E+  +  A +                YN  ID  CK
Sbjct: 216 DDMINVGIRPDVYIYTGV-IRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCK 274

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
            + V EA  + + +  K      P   TY  ++  L +    E    ++  M+     P 
Sbjct: 275 KQKVWEAVGIKKDLAGKEL---KPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPS 331

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
            +    ++EG+   GKVEEA   ++ +   G  P+I  YN  +  LC  +N DEA  L+ 
Sbjct: 332 EAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFD 391

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           RM ++G  P+  TY++LI M+   G+ D A     EM   G    V  Y  +I+G     
Sbjct: 392 RMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFG 451

Query: 427 KVEEACFLLEEVVNKGLK 444
            +  A  L+ E++NK L+
Sbjct: 452 DISAAESLMAEMINKKLE 469



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 51/313 (16%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E I +  +P +   N L++  CK G +  AE++   + NK ++P   TY  L        
Sbjct: 427 EMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKG 486

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++   EM   G  P  +T+ T +    +A ++ +A  LF  M         P   
Sbjct: 487 KINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEM---AEWNVKPNRV 543

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG------------ 321
           TY +MI    +   M + F  L  MI  G +PD  +Y+ ++ G+CL G            
Sbjct: 544 TYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGL 603

Query: 322 -----------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
                                  K+EEA    ++MG +G   D+V Y   +     +K+ 
Sbjct: 604 HKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDR 663

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
              L L   M + G  P    Y  +I    + G+   AF  W  M   GC  +  TY  +
Sbjct: 664 KVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAV 723

Query: 419 IDGLFDCSKVEEA 431
           I+GL     V EA
Sbjct: 724 INGLCKAGFVNEA 736



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 3/190 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MI  G  P+  TY   I+  CKA  V EA  L   MR   S    P   TY   +  L +
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSV---PNQVTYGCFLDILTK 764

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
                +    L + I  G L + +TY  ++ G C  G++EEA + +  M   G  PD +T
Sbjct: 765 GVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCIT 824

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +  LC   +  +A+ L+  M E G  P    YN LI      GE   A E  +EM 
Sbjct: 825 YTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884

Query: 405 KRGCAQDVDT 414
           ++G   + +T
Sbjct: 885 RQGLKPNTET 894



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 25/203 (12%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           +++ LCK G V+ AE +C    +K++P  +                   P+  TY   +D
Sbjct: 723 VINGLCKAGFVNEAEILC----SKMRPGNSV------------------PNQVTYGCFLD 760

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
              K   V +     E        + + TA TY ++I    +  RMEE   L+  MI  G
Sbjct: 761 ILTKG--VGDMKKAVELHNAILKGLLANTA-TYNMLIRGFCRQGRMEEASELITRMIGDG 817

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             PD  TY  ++  +C    V++A +    M  KG  PD V YN  +   C      +A 
Sbjct: 818 VSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKAT 877

Query: 363 RLYGRMIEVGCWPSVQTYNMLIS 385
            L   M+  G  P+ +T    IS
Sbjct: 878 ELRNEMLRQGLKPNTETSETTIS 900


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 16/270 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P I   N L++  CK G V  A + +    K   KPN  TYN L                
Sbjct: 368 PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLL 427

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  ++  G  PD  TYN  +D FCK   +  A ++F  M + G     P   T+  +I  
Sbjct: 428 LRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL---EPDGFTFTALIDG 484

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+E+   +LG M+  G   D  T+  +++G C  GK ++     E M        
Sbjct: 485 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 544

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+NCFL  L  +   +EA  + G+M++ G  PSV T+ +LI  +   GE   + +   
Sbjct: 545 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 604

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            M + GC+ +V TY ++I+GL +  +VEEA
Sbjct: 605 RMKQAGCSPNVYTYTIIINGLCNNGRVEEA 634



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 128/266 (48%), Gaps = 25/266 (9%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           +++ALCK G V  AE  C +V                      +++G   D     + + 
Sbjct: 200 VVNALCKNGFVQAAEMFCCKV----------------------LRLGFGLDTHVCTSLVL 237

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             C+   + EA  +FE M  + +    P + TY+I+I  L +  R+EE F L   M+  G
Sbjct: 238 ANCRRDDLGEAFRVFEKMSKEEN--CRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKG 295

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P   TY  +++  C  G  ++A K L+EM  K   P++ TY   +  LC     +EA 
Sbjct: 296 CQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 355

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++ +M++ G  P + T+N LI+ Y + G    AF+    M+K  C  ++ TY  +++GL
Sbjct: 356 GVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGL 415

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYR 448
              SK  +A  LL  VV+ GL LP R
Sbjct: 416 CRVSKSYKAFLLLRRVVDNGL-LPDR 440



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 127/298 (42%), Gaps = 16/298 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           +P     ++L+  LC+ G ++ A  + +  V+   +P+  TY +L             M+
Sbjct: 262 RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMK 321

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM      P+  TY   ID  C+   + EA  +F  M   G     P   T+  +I 
Sbjct: 322 MLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL---CPGIITFNALIN 378

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +   F LL  M    C P++ TY E++EG+C   K  +A+  L  + + G  P
Sbjct: 379 GYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLP 438

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTYN  +   C     + A  ++  M   G  P   T+  LI    +LG  + A    
Sbjct: 439 DRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGIL 498

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
             M K+G + D  T+  +IDG     K ++ CFL E +V          F+ +L  L 
Sbjct: 499 GSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 556



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 122/298 (40%), Gaps = 45/298 (15%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL----------- 217
           K   +P I   N L++ LC+      A  + +RV  N + P+  TYNIL           
Sbjct: 398 KGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLN 457

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------- 269
                   M   G  PD FT+   ID  CK   + +A  +   M  KG ++         
Sbjct: 458 MAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 517

Query: 270 -------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                     TA T+   + AL ++ ++ E  ++LG M+  G +
Sbjct: 518 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLV 577

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P V T+  ++EG C AG+   + K LE M   G  P++ TY   +  LC+N   +EA  +
Sbjct: 578 PSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 637

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              M   G  P+  TY +L+  + + G  D AF+    M K GC  +   Y  ++ G 
Sbjct: 638 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 695



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 18/295 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL--- 217
           LKQ  E ++   QP      +L+ A C  G+ D A  +   +  K   PN +TY IL   
Sbjct: 287 LKQ--EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDR 344

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                          +M++ G  P   T+N  I+ +CK   V  A  L   M  KG+   
Sbjct: 345 LCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVME-KGN--C 401

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P  +TY  ++  L +  +  + F LL  ++++G LPD  TY  +++G C  G++  A+ 
Sbjct: 402 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 461

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               M + G  PD  T+   +  LC     ++A  + G M++ G      T+  LI  + 
Sbjct: 462 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 521

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++G+       +  M +  C     T+   +D L    K+ EA  +L +++  GL
Sbjct: 522 KIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 576



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 29/285 (10%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNF 235
           ++N  N +L  + K GLV    T    ++   +        L ++ LE M Q G +P+ +
Sbjct: 560 KLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA---LSLKMLERMKQAGCSPNVY 616

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY   I+  C    V EA  +   M + G    SP   TYA+++ A V+  R++  F ++
Sbjct: 617 TYTIIINGLCNNGRVEEAETILFSMSSFGV---SPNHFTYAVLVKAHVKAGRLDRAFQIV 673

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLA------------GKVEEAYKFLEEMGNK------- 336
             M+ +GC P+   Y  +L G  L+            G ++      EE  N        
Sbjct: 674 STMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIK 733

Query: 337 --GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G P + + YN  +  LC      EA +L   M++ G +P  +  + +I  Y +  + D
Sbjct: 734 KCGVPTEDL-YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-KAISSIIEHYCKTCKYD 791

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
              E    +          +YC +I GL +  +V+EA  L+ ++V
Sbjct: 792 NCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLV 836



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 39/220 (17%)

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M   G  +S P    Y+ +++ L + +     F +   M+N G +     Y+ V+  +C 
Sbjct: 150 MTELGFRLSYPC---YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCK 206

Query: 320 AGKVE-----------------------------------EAYKFLEEMGN-KGYPPDIV 343
            G V+                                   EA++  E+M   +   P+ V
Sbjct: 207 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSV 266

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +  LC+    +EA +L   M+E GC PS +TY +LI    ++G  D A +   EM
Sbjct: 267 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 326

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             + C  +V TY ++ID L    K+EEA  +  +++  GL
Sbjct: 327 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 38/254 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           LK      +    P +    ++++ LC  G V+ AETI   + +  V PN  TY +L   
Sbjct: 600 LKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 659

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      Q +  M++ G  P++  Y+  +  F  +     A  L         ++S
Sbjct: 660 HVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLS 719

Query: 269 S-----------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           S                 PT   Y  ++V L +  R+ E   L   M+  G  PD     
Sbjct: 720 SEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-KAIS 778

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-- 369
            ++E  C   K +   +F++ + +  + P   +Y   +  L +     EA +L   ++  
Sbjct: 779 SIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRH 838

Query: 370 -----EVGCWPSVQ 378
                EV   PS++
Sbjct: 839 TGIEEEVEVTPSIE 852



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 317 MCLA----GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           MCLA    G V  A+     M N+G+    + Y   +  LC N     A     +++ +G
Sbjct: 167 MCLAKLNMGFV--AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLG 224

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEA 431
                     L+       +   AF  + +M K   C  +  TY ++I GL +  ++EEA
Sbjct: 225 FGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEA 284

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             L +E+V KG +   R +   +     IG      K+ D M
Sbjct: 285 FQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 326


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 16/312 (5%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-- 217
           +LK   E      +P +   N ++  LCK G VD AE + + + N+ + P+   Y  L  
Sbjct: 29  VLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLID 88

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       +  +EM +    PD   Y   I   C+   + EA  +F  M ++G   
Sbjct: 89  GFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGV-- 146

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  +I    ++  ME+ FSL   M+ SG  P+V TY  + +G+C  G+V+ A 
Sbjct: 147 -EPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTAN 205

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L EM  KG   +I TYN  +  LC + N  +A++L   M   G +P   T+  L+  Y
Sbjct: 206 ELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAY 265

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            + GE   A E   EM  RG    V T+ V+++G      +E+   LL  ++ KG+    
Sbjct: 266 CKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNT 325

Query: 448 RKFDSYLMQLSV 459
             ++S + Q  +
Sbjct: 326 TTYNSLMKQYCI 337



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 3/245 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G APD  +Y+T I+ +C    + +   L + M+ KG     P   TY  +I+ L ++ ++
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGL---KPNLYTYNSIILLLCKSGKV 61

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           ++   +L  MIN G +PD   Y  +++G C  G ++ AYK  +EM  +   PD + Y   
Sbjct: 62  DDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAV 121

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC      EA +++ +M   G  P   TY  LI  Y + GE + AF   ++M + G 
Sbjct: 122 ICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGL 181

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             +V TY  + DGL    +V+ A  LL E+  KGL+L    ++S +  L   G++    K
Sbjct: 182 TPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVK 241

Query: 469 LSDHM 473
           L + M
Sbjct: 242 LMEEM 246



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 16/326 (4%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           K + E  K +  P+  A   ++  LC+CG +  A+ +  ++ ++ V+P+  TY  L    
Sbjct: 101 KLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGY 160

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                         +M+Q G  P+  TY    D  CK   V  A +L   M  KG  ++ 
Sbjct: 161 CKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLN- 219

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
               TY  ++  L ++  + +   L+  M  +G  PD  T+  +++  C  G++ +A++ 
Sbjct: 220 --ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHEL 277

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L EM ++G  P ++T+N  +   C +   ++  RL   M+E G  P+  TYN L+  Y  
Sbjct: 278 LREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCI 337

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
                   E +  M  RG   D +TY ++I G      ++EA FL +E+  KG  L    
Sbjct: 338 RNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASS 397

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++S +        +    +L + MR+
Sbjct: 398 YNSIIKGFFKKKKISEARELFEEMRR 423



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 5/272 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++ ++EM   G  P+ +TYN+ I   CK+  V +A  +   M  +G     P    Y  +
Sbjct: 30  LKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIV---PDTVVYTTL 86

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I    +   ++  + L   M     +PD   Y  V+ G+C  GK+ EA K   +M ++G 
Sbjct: 87  IDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGV 146

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD VTY   +   C +   ++A  L+ +M++ G  P+V TY  L     +LG+ D A E
Sbjct: 147 EPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANE 206

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
             HEM  +G   ++ TY  +++GL     + +A  L+EE+   G+      F + +    
Sbjct: 207 LLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYC 266

Query: 459 VIGDLGAIHKLSDHM--RKFYNPVIARRLALN 488
             G++   H+L   M  R     VI   + +N
Sbjct: 267 KTGEMVKAHELLREMLDRGLQPTVITFNVLMN 298



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 16/288 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + + ++    P +     L D LCK G VD A  +   +  K ++ N  TYN L      
Sbjct: 173 HNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCK 232

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ +EEM   G  PD  T+ T +D +CK   + +A +L   M  +G     PT
Sbjct: 233 SGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGL---QPT 289

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ +++     +  +E+   LL  M+  G +P+ +TY  +++  C+   +    +  +
Sbjct: 290 VITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYK 349

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  +G  PD  TYN  +K  C  +N  EA  L+  M E G   +  +YN +I  +F+  
Sbjct: 350 GMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKK 409

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           +   A E + EM + G A D + Y + +D  +    +E A  L +E +
Sbjct: 410 KISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAI 457



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 126/283 (44%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILG------------MQ 220
           +P+      L+D  CK G ++ A ++  + V++ + PN  TY  L              +
Sbjct: 147 EPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANE 206

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM   G   +  TYN+ ++  CK+  + +A  L E M   G     P   T+  ++ 
Sbjct: 207 LLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM---YPDTITFTTLMD 263

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A  +   M +   LL  M++ G  P V T+  ++ G C++G +E+  + L  M  KG  P
Sbjct: 264 AYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMP 323

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +  TYN  +K  C   N      +Y  M   G  P   TYN+LI  + +      A+   
Sbjct: 324 NTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLH 383

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM ++G      +Y  +I G F   K+ EA  L EE+  +G+
Sbjct: 384 KEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGM 426



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+      L+DA CK G +V   E + + +   ++P   T+N+L            G + 
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M++ G  P+  TYN+ +  +C    +    ++++ M  +G     P + TY I+I  
Sbjct: 313 LAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVM---PDSNTYNILIKG 369

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   M+E + L   M   G     S+Y  +++G     K+ EA +  EEM  +G   D
Sbjct: 370 HCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAAD 429

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
              YN F+ +     N + AL L    IE
Sbjct: 430 AEIYNLFVDISYGEGNMETALELCDEAIE 458



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%)

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  PD+V+Y+  +   C      + L+L   M   G  P++ TYN +I +  + G+ D 
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A     EM  +G   D   Y  +IDG      ++ A  L +E+  + +   +  + + + 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 456 QLSVIGDLGAIHKLSDHM 473
            L   G +    K+ + M
Sbjct: 124 GLCRCGKMMEADKVFNKM 141


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 137/282 (48%), Gaps = 18/282 (6%)

Query: 182 LLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           L++DA C+ G V+       K V+  + PN   +  L              + LEEM++ 
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           G  P+ +T+ T ID  CK     +A  LF + +R+ G     P   TY  MI    + D+
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGY---KPNVHTYTAMINGYCKEDK 380

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +     LL  M   G +P+ +TY  +++G C  G    AY+ ++ MG +G+ P+I TYN 
Sbjct: 381 LNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNA 440

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC   + DEA RL  ++   G      TY +L+S++    + + +   +++M K G
Sbjct: 441 IIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVG 500

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
              D+ +Y  +I       +++E+  L EE V+ GL +P +K
Sbjct: 501 FTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGL-IPTKK 541



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 17/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVK-NKVKPNANTYNIL------- 217
           E ++   +P +     L+D LCK G  + A     K V+ +  KPN +TY  +       
Sbjct: 319 EMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKE 378

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                    L  M + G  P+  TY T ID  CK      A +L + M  +G    SP  
Sbjct: 379 DKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGF---SPNI 435

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY  +I  L +   ++E + LL  +   G   D  TY  ++   C       +  F  +
Sbjct: 436 YTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNK 495

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G+ PDI +Y   +   C  K   E+ RL+   + +G  P+ +TY  +I  Y   G 
Sbjct: 496 MLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGN 555

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              A + +  M   GCA D  TY  +I GL   SK+++A  L + +++KGL
Sbjct: 556 TSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 125/313 (39%), Gaps = 48/313 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P ++    +++  CK   ++ AE +  R++ + + PN NTY  L              +
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-----EFMRTKGSTIS------- 268
            ++ M + G +P+ +TYN  ID  CK   + EA  L        ++  G T +       
Sbjct: 422 LMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHC 481

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                               +P   +Y  +I    +  +M+E   L    ++ G +P   
Sbjct: 482 RQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKK 541

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G C  G    A K  + M N G  PD +TY   +  LC     D+A  LY  M
Sbjct: 542 TYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAM 601

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           ++ G  P   T   L   Y +  +   A      ++KR   + V+T   ++  L    K+
Sbjct: 602 MDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNT---LVRKLCSEGKL 658

Query: 429 EEACFLLEEVVNK 441
           + A     ++++K
Sbjct: 659 DMAALFFHKLLDK 671



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 3/196 (1%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           F +   + EA ++   M+ +G   S+ T      + V +   +  E  F     M   G 
Sbjct: 164 FAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFV---EMCQRGV 220

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            PD  ++K ++   C  G+V EA K+L  M  +G+  D  T    +   C     +  + 
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVG 280

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
            + +M+E+G  P+V  +  LI+   + G    AFE   EM +RG   +V T+  +IDGL 
Sbjct: 281 YFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLC 340

Query: 424 DCSKVEEACFLLEEVV 439
                E+A  L  ++V
Sbjct: 341 KKGWTEKAFRLFLKLV 356



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           M++   +N +++E  +++  M N G +    T   VL+     G VE A     EM  +G
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD V++   +   C+     EA +    M+E G      T  ++I  + + G  +   
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + +M + G A +V  +  +I+GL     +++A  LLEE+V +G K
Sbjct: 280 GYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWK 326


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 146/314 (46%), Gaps = 28/314 (8%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNI-LG 218
           ILK + +      +P +   N+++  LC+ G +  A  I  ++   ++ PN  TY I L 
Sbjct: 592 ILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFLD 651

Query: 219 M-----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
           M           +T E ++  G       YNT I T CK  M  +AA + E M  +G   
Sbjct: 652 MSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFV- 710

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   T+  ++        + +  S    M+ +G  P+V+TY  ++ G+  AG ++E  
Sbjct: 711 --PDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVE 768

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           K+L EM ++G  PD  TYN  +       N  E++ +Y  MI  G  P   TYN+LIS +
Sbjct: 769 KWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEF 828

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD-CSKVE-----------EACFLL 435
            ++G+   A E   EM KR  + +  TYC MI GL   C+  E           EA  LL
Sbjct: 829 AKVGKMLQATELMKEMGKRRVSPNTSTYCTMISGLCKLCTHPEVEWNKKAMYLAEAKGLL 888

Query: 436 EEVVNKGLKLPYRK 449
           +E++ +   +PY +
Sbjct: 889 KEMIEEKGYIPYNQ 902



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 142/292 (48%), Gaps = 26/292 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYN--ILGM-- 219
           Y++ I     P++ ALN+L+ +LCK G + +A ++   ++N+V   +  TYN  I G+  
Sbjct: 117 YSKMIACGVSPDVFALNVLIHSLCKVGQLSFAISL---LRNRVISVDTVTYNTVISGLCE 173

Query: 220 --------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   Q L EM+++G  PD  ++NT ID FCK      A  L +        IS   
Sbjct: 174 HGLADEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVD-------EISELN 226

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ I+I +      +EE +     M+ SG  PDV T+  ++  +C  GKV E    L 
Sbjct: 227 LITHTILISSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLR 283

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM   G  P+ VTY   +  L   K+   AL LY +M+  G    +  Y +L++  F+ G
Sbjct: 284 EMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAG 343

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A +T+  + +     +V TY  ++DGL     +  A F++ +++ K +
Sbjct: 344 DLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSV 395



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 15/317 (4%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQ 220
           +E +K+   P+  + N L+D  CK G    A+ +   +    + N  T+ IL      + 
Sbjct: 185 SEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEIS---ELNLITHTILISSYYNLH 241

Query: 221 TLEE----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
            +EE    M+  G  PD  T+++ I+  CK   V E   L   M   G     P   TY 
Sbjct: 242 AIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVY---PNHVTYT 298

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++ +L +        +L   M+  G   D+  Y  ++ G+  AG + EA K  + +   
Sbjct: 299 TLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLED 358

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              P++VTY   +  LC   +   A  +  +M+E   +P+V TY+ +I+ Y + G  + A
Sbjct: 359 NEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEA 418

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
                +M+ +    +  TY  +IDGLF   K E A  + +E+   G++      D+ +  
Sbjct: 419 VSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDALVNH 478

Query: 457 LSVIGDLGAIHKLSDHM 473
           L  IG +  +  L   M
Sbjct: 479 LKRIGRIKEVKGLVKDM 495



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 180/406 (44%), Gaps = 52/406 (12%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-----------LKQ 164
           + Y  ++D L    +KAK +R   ++   M       +PVD+++             L++
Sbjct: 295 VTYTTLVDSL----FKAKDYRHALALYSQMVVRG---IPVDLVVYTVLMAGLFKAGDLRE 347

Query: 165 YTEKIKVKTQ----PEINALNLLLDALCKCGLVDYAE-TICKRVKNKVKPNANTYNIL-- 217
             +  K+  +    P +     L+D LCK G +  AE  I + ++  V PN  TY+ +  
Sbjct: 348 AEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMIN 407

Query: 218 -----GMQTLEEMIQMGH-------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                GM  LEE + +          P+ FTY T ID   KA     A+++ + MR  G 
Sbjct: 408 GYVKKGM--LEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGV 465

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
             ++        ++  L +  R++E   L+  M++ G   D   Y  +++     G  E 
Sbjct: 466 EENNYILDA---LVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEA 522

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCD-NKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A  + EEM  K  P D+V+YN  +  L    K G  A   Y  M E G  P + T+N+++
Sbjct: 523 ALSWAEEMQEKEMPWDVVSYNVLISGLLKFGKVG--ADWAYKGMREKGIEPDIATFNIMM 580

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   + G+ +G  + W +M   G    +    +++  L +  K++EA  +L++++     
Sbjct: 581 NSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMM----- 635

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQK 490
             + +    L    +  D+ + HK +D + K +  +++  + L+++
Sbjct: 636 --FMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQ 679



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 119/283 (42%), Gaps = 14/283 (4%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL-FEFMRTKGSTISSPTAKTYAIMIVA 281
           EEM +     D  +YN  I    K   V   AD  ++ MR KG     P   T+ IM+ +
Sbjct: 528 EEMQEKEMPWDVVSYNVLISGLLKFGKV--GADWAYKGMREKGI---EPDIATFNIMMNS 582

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +    E    L   M + G  P +     V+  +C  GK++EA   L++M      P+
Sbjct: 583 QRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPN 642

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TY  FL +   +K  D   + +  ++  G   S Q YN LI+   +LG    A     
Sbjct: 643 LTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVME 702

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M+ RG   D  T+  ++ G F  S V +A      ++  G+      +++ +  LS  G
Sbjct: 703 DMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAG 762

Query: 462 DLGAIHKLSDHMRK--------FYNPVIARRLALNQKRVRISL 496
            +  + K    M+          YN +I+ +  +  K+  +++
Sbjct: 763 LIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTI 805



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL-FEFMRTKGSTISSPTAKTYAIM 278
           +TL  M   G  PD   +N+ I  F    +V +   L +  M   G    SP      ++
Sbjct: 79  RTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVYSKMIACGV---SPDVFALNVL 135

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I +L +  ++    SLL + + S    D  TY  V+ G+C  G  +EAY+FL EM   G 
Sbjct: 136 IHSLCKVGQLSFAISLLRNRVIS---VDTVTYNTVISGLCEHGLADEAYQFLSEMVKIGI 192

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD V++N  +   C   N   A  L   + E+    ++ T+ +LIS Y+ L   +   E
Sbjct: 193 LPDTVSFNTLIDGFCKVGNFARAKALVDEISEL----NLITHTILISSYYNLHAIE---E 245

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + +M   G   DV T+  +I+ L    KV E   LL E+   G+
Sbjct: 246 AYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGV 290


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 143/327 (43%), Gaps = 51/327 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILG--- 218
           Y + +    QP +   N L++ L K G V  AE I  ++ +  + P+  TY   ILG   
Sbjct: 228 YKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCR 287

Query: 219 -------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                      + M++ G  P++ TY+T I+  C    V EA D+ E M  KG     PT
Sbjct: 288 NRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGI---EPT 344

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY + I AL   +  EE   L+  M   GC P+V TY  ++ G+   GK+E A     
Sbjct: 345 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 404

Query: 332 EMGNKGYPPDIVTYNCFL-----------------------------------KVLCDNK 356
           +M  +G  P+ VTYN  +                                   K LC   
Sbjct: 405 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 464

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           + ++A+ L+ +M+++G  P+V TYN LI+ Y   G  + A      M + GC  D  TY 
Sbjct: 465 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYN 524

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ G     K+E A F  +E+V  GL
Sbjct: 525 ELVSGFSKWGKLESASFYFQEMVECGL 551



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 181 NLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N ++  LC  G ++ A  +  K +K    P   TYN L              + L+ M +
Sbjct: 454 NEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKE 513

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD +TYN  +  F K   +  A+  F+ M   G    +P   +Y  +I    ++ +
Sbjct: 514 NGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL---NPNPVSYTTLIDGHSKDGK 570

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++   SLL  M   GC P+V +Y  V+ G+    +  EA K  ++M  +G  P+++TY  
Sbjct: 571 VDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTT 630

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC N     A +++  M +  C P++ TY+ LI    + G+ D A     EM+++G
Sbjct: 631 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKG 690

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            A D  T+  +IDG     +++ A  LL  +V+ G K  YR +   L  L
Sbjct: 691 LAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGL 740



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 22/341 (6%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           SML+ + R+ +VF P D + +++ +       + + EI  +   L+ +   G   ++   
Sbjct: 155 SMLNRLVRD-RVFAPADHIRILMIK-----ACRNEEEIRRVADFLNEISGMGF-GFSLYS 207

Query: 200 CKRVKNKVKPNANTYNILGMQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEA----A 254
           C  +  ++   A    + G + L ++M+  G  P   T+NT I+   K   V EA    +
Sbjct: 208 CNTLLIQL---AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILS 264

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            +F++         SP   TY  +I+   +N  ++  F +   M+  GC P+  TY  ++
Sbjct: 265 QIFQYDL-------SPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLI 317

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G+C  G+V+EA   LEEM  KG  P + TY   +  LC  ++ +EA+ L  RM + GC 
Sbjct: 318 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 377

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+VQTY  LIS    LG+ + A   +H+M K G   +  TY  +I+ L    +   A  +
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 437

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              +   G     + ++  +  L + GD+     L + M K
Sbjct: 438 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 478



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 159/380 (41%), Gaps = 26/380 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL---------MILKQYT 166
           L +N +I+ILS  K K ++  L+ S +     +  VF    ++L         +    + 
Sbjct: 241 LTFNTLINILSK-KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFD 299

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNI--------- 216
             +K    P     + L++ LC  G VD A + + + ++  ++P   TY +         
Sbjct: 300 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 359

Query: 217 ---LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ +  M + G  P+  TY   I    +   +  A  L+  M  +G     P   
Sbjct: 360 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV---PNTV 416

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R      +   M   G L +  TY E+++G+CL G +E+A    E+M
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P +VTYN  +       N + A RL   M E GC P   TYN L+S + + G+ 
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 536

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A   + EM + G   +  +Y  +IDG     KV+ A  LLE +   G       +++ 
Sbjct: 537 ESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAV 596

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           +  LS         K+ D M
Sbjct: 597 INGLSKENRFSEAEKICDKM 616



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 40/337 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILGMQT---------- 221
           P +     L+D LC+ G   +A  I   + K K  PN  TY+  I G+            
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 682

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM + G APD  T+ + ID F     +  A   F  +R        P  +TY++++  
Sbjct: 683 LKEMERKGLAPDEVTFTSLIDGFVVLGRIDHA---FLLLRRMVDVGCKPNYRTYSVLLKG 739

Query: 282 L------------VQND------------RMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           L            VQ++              E   +LL  M   GC P + TY  ++ G+
Sbjct: 740 LQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGL 799

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C  G+  EA + +++M  +G+ PD   Y   L   C N   D AL+++  +   G    +
Sbjct: 800 CRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHL 859

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             Y  LI    + G+ + A   +  M ++    D   + V++DGL    +++    LL  
Sbjct: 860 SIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHI 919

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
           + +K      + +     +LS IG       L+D ++
Sbjct: 920 MESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 956


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 18/299 (6%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GM 219
            +P +   N++LD LCK G       + +R V N ++P+  TY IL              
Sbjct: 260 ARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAA 319

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +   E+I+ G   D   YN+ +  FC+A  V EA   ++     G        +TY IMI
Sbjct: 320 RVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR----NLRTYNIMI 375

Query: 280 VALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
             L  +  ++E   L   +  +  C+PD  T+  ++ G+C  G   +A+   EE    G 
Sbjct: 376 KGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK 435

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D+ +Y+  +  LC+     +A+++Y +M + GC P+   YN LIS + ++     A  
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR 495

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            + +M   GC+  V TY  +IDGL    K +EA  +  E+V  G       + S +  L
Sbjct: 496 IYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGL 554



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK--RVKNK---VKPNANTYNIL--------GMQT 221
           P+      L+  LC+ G  + A TI +  RV  K   V   ++  N L         ++ 
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKV 461

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+M + G  P++  YN  I  FC+    ++A  ++  M   G    SPT  TY  +I  
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGC---SPTVITYNTLIDG 518

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + ++ +E  S+   M+ +G  PD++TY  ++ G+    K+++A    +++  KG   D
Sbjct: 519 LCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVD 578

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ +N  +  LC     DEAL ++  M E   C P++ TYN L+   +E G  D A   W
Sbjct: 579 VMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLW 638

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             + + G   D+ +Y   I GL  C ++ E   LL+EV+++G+
Sbjct: 639 TSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGI 681



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 18/279 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL------------GMQTLEEMI 226
           N+++  L   G+VD A  +   ++  V   P+  T+  L                 EE  
Sbjct: 372 NIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEAR 431

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G   D F+Y++ I+  C    + +A  ++E M   G     P +  Y  +I    Q  
Sbjct: 432 VSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGC---KPNSHIYNALISGFCQVY 488

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  +   +   M ++GC P V TY  +++G+C A K +EA     EM   G+ PDI TY 
Sbjct: 489 RTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYG 548

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DK 405
             ++ L  +K  D+AL ++ +++  G    V  +N+LI      G+ D A   + +M +K
Sbjct: 549 SLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEK 608

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + C  ++ TY  ++DGL++   +++A  L   +   GL+
Sbjct: 609 KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLE 647



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 22/276 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-----KVKPNANTYNIL----------- 217
            P I + N LLDA  +      A+     + +     ++ PN  TYNI+           
Sbjct: 116 NPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLD 175

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +   + + +   APD  TY+T +    K   +  A DL + M   G     P    Y 
Sbjct: 176 RAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGV---QPDVVCYN 232

Query: 277 IMIVALVQNDRMEECFSLLGHMI-NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            ++    +    E+   +   ++ + G  P+++TY  +L+G+C  G+ +E  +  E M  
Sbjct: 233 ALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVA 292

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               PD++TY   +  LC + + D A R+Y  +I+ G       YN L+  + + G    
Sbjct: 293 NNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQE 352

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           A++ W      G  +++ TY +MI GLFD   V+EA
Sbjct: 353 AWKFWDSAGFAGL-RNLRTYNIMIKGLFDSGMVDEA 387



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 52/267 (19%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           Q ++ + + +++ LC  G LVD  +   K  K+  KPN++ YN L             ++
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR 495

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M   G +P   TYNT ID  CKA    EA+ +   M   G T   P   TY  +I 
Sbjct: 496 IYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT---PDITTYGSLIR 552

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---- 336
            L  + ++++  S+   ++  G   DV  +  ++ G+C AGKV+EA     +M  K    
Sbjct: 553 GLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCP 612

Query: 337 --------------------------------GYPPDIVTYNCFLKVLCDNKNGDEALRL 364
                                           G  PDI++YN  +K LC      E ++L
Sbjct: 613 PNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQL 672

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELG 391
              ++  G  P+V T+N+L+    + G
Sbjct: 673 LDEVLSRGIIPTVITWNILVRAVIKYG 699



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 4/247 (1%)

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK--GSTISSPTAKTYAIMIVALVQN 285
           +G  P   ++N  +D F +AR  ++A   F  +     G  I+ P  +TY I++ +L   
Sbjct: 113 LGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIA-PNLQTYNIVLRSLCAR 171

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             ++   +L   +      PD  TY  ++ G+    +++ A   L+EM   G  PD+V Y
Sbjct: 172 GDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCY 231

Query: 346 NCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           N  L         ++ +R++ +++ + G  P++ TYN+++    + G      E W  M 
Sbjct: 232 NALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMV 291

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
                 DV TY ++I GL     V+ A  +  E++  GL +    ++S +      G + 
Sbjct: 292 ANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQ 351

Query: 465 AIHKLSD 471
              K  D
Sbjct: 352 EAWKFWD 358



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 31/174 (17%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           GC P + ++  +L+    A +  +A  F   + +  +                       
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAF----------------------- 150

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
               GR I     P++QTYN+++      G+ D A   +  + +R  A D  TY  ++ G
Sbjct: 151 ----GRRIA----PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCG 202

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           L    +++ A  LL+E+   G++     +++ L      G+   + ++ D + K
Sbjct: 203 LAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVK 256


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 16/325 (4%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--- 217
           L  ++  ++ +  P I     LL+ + K    D    +CK ++   V  +  T N+L   
Sbjct: 56  LDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNC 115

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L +++++G  PD FT+ + I+ FC    + EA  +   M   G    
Sbjct: 116 FCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGI--- 172

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P    Y  +I +L +N  ++   SL   M N G  PDV  Y  ++ G+C +G+  +A  
Sbjct: 173 KPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADL 232

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L  M  +   PD++T+N  +          +A  LY  MI++   P++ TY  LI+   
Sbjct: 233 LLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLC 292

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G  D A + ++ M+ +GC  DV  Y  +I+G   C KVE+A  +  E+  KGL     
Sbjct: 293 MEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTI 352

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHM 473
            + + +    ++G      ++  HM
Sbjct: 353 TYTTLIQGFGLVGKPNVAQEVFGHM 377



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 137/287 (47%), Gaps = 19/287 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
           +P++     L++ LC  G    A+ + +  +K K+KP+  T+N L              +
Sbjct: 208 RPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKE 267

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EMIQM  AP+ FTY + I+  C    + EA  +F  M TKG     P    Y  +I 
Sbjct: 268 LYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCF---PDVVAYTSLIN 324

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++E+   +   M   G   +  TY  +++G  L GK   A +    M ++G PP
Sbjct: 325 GFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPP 384

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV---GCWPSVQTYNMLISMYFELGEPDGAF 397
           +I TYN  L  LC N   ++AL ++  M +    G  P+++TYN+L+      G+ + A 
Sbjct: 385 NIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKAL 444

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             + +M KR     + TY ++I G+    KV++A  L   + +KG+K
Sbjct: 445 MVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVK 491



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 19/291 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTY----NILGMQT-L 222
           +K K +P++   N L+DA  K G L+D  E   + ++  + PN  TY    N L M+  L
Sbjct: 238 MKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRL 297

Query: 223 EEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           +E  QM       G  PD   Y + I+ FCK + V +A  +F  M  KG T ++ T  T 
Sbjct: 298 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTL 357

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
                 + + +  +E F   GHM++ G  P++ TY  +L  +C  GKV +A    E+M  
Sbjct: 358 IQGFGLVGKPNVAQEVF---GHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQK 414

Query: 336 K---GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           +   G PP+I TYN  L  LC N   ++AL ++G M +      + TY ++I    + G+
Sbjct: 415 REIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGK 474

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              A   +  +  +G   +V TY  MI GLF    + EA  L  ++   G+
Sbjct: 475 VKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGV 525



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 131/303 (43%), Gaps = 45/303 (14%)

Query: 181 NLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           NLL++  C+      A + + K +K   +P+  T+  L             M  + +M++
Sbjct: 110 NLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVE 169

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------STISS--------- 269
           MG  PD   Y T ID+ CK   V  A  LF  M   G         S ++          
Sbjct: 170 MGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRD 229

Query: 270 --------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
                         P   T+  +I A V+  ++ +   L   MI     P++ TY  ++ 
Sbjct: 230 ADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLIN 289

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G+C+ G+++EA +    M  KG  PD+V Y   +   C  K  ++A++++  M + G   
Sbjct: 290 GLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTG 349

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +  TY  LI  +  +G+P+ A E +  M  RG   ++ TY V++  L    KV +A  + 
Sbjct: 350 NTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIF 409

Query: 436 EEV 438
           E++
Sbjct: 410 EDM 412



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 93/237 (39%), Gaps = 42/237 (17%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGM----------------------------- 317
           +  E   L  HM+ S  LP +  +  +L  +                             
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCN 110

Query: 318 ------CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
                 C + +   A  FL ++   G+ PDI T+   +   C     +EA+ +  +M+E+
Sbjct: 111 LLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEM 170

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P V  Y  +I    + G  D A   +++M+  G   DV  Y  +++GL +  +  +A
Sbjct: 171 GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDA 230

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488
             LL  ++ + +K     F++ +      G      KL D  ++ YN +I   +A N
Sbjct: 231 DLLLRGMMKRKIKPDVITFNALIDAFVKEG------KLLDA-KELYNEMIQMSIAPN 280



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%)

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            Y+E+L     + +  EA      M      P I+ +   L V+   K  D  + L   +
Sbjct: 38  NYREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHL 97

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
             +G    + T N+L++ + +  +P  A     ++ K G   D+ T+  +I+G    +++
Sbjct: 98  QIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRI 157

Query: 429 EEACFLLEEVVNKGLK 444
           EEA  ++ ++V  G+K
Sbjct: 158 EEAMSMVNQMVEMGIK 173


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 129/252 (51%), Gaps = 13/252 (5%)

Query: 191 GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           G++    T CK  + KVK   N +          M++ G  P+  TY++ +D +C  + V
Sbjct: 221 GMMAPVSTFCK--EGKVKEAKNVF--------AAMMKKGFKPNVVTYSSLMDGYCLVKEV 270

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A  +F  M   G    +P  ++Y I+I    +    +   +L   M     +P+V TY
Sbjct: 271 NKAKSIFNNMAQGGV---NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTY 327

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G+C +GK+  A K ++EM ++G PPDI+TY+  L  LC N  GD+A+ L  ++ +
Sbjct: 328 NSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKD 387

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P++ TY +LI+   + G P+ A   + ++  +G   +V+TY VMI    +     E
Sbjct: 388 QGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGE 447

Query: 431 ACFLLEEVVNKG 442
           A  +L ++   G
Sbjct: 448 ALAMLSKMEENG 459



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 16/256 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           +   +K   +P +   + L+D  C    V+ A++I   + +  V P+  +YNIL      
Sbjct: 242 FAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCK 301

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  M   EEM      P+  TYN+ ID  CK+  ++ A  L + M  +G     P 
Sbjct: 302 IKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQ---PPD 358

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY+ ++ AL +N   ++  +LL  + + G  P++ TY  ++ G+C  G+ E+A    E
Sbjct: 359 IITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFE 418

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           ++  KGY  ++ TY   + V C+N    EAL +  +M E GC P+  TY ++I   F+  
Sbjct: 419 DLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKD 478

Query: 392 EPDGAFETWHEMDKRG 407
           E D A +   EM  RG
Sbjct: 479 ENDKAEKLLLEMITRG 494



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 127/273 (46%), Gaps = 16/273 (5%)

Query: 184 LDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230
           +   CK G V  A+ +    +K   KPN  TY+ L                   M Q G 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
            PD  +YN  I+ FCK +M   A +LFE M  +      P   TY  +I  L ++ ++  
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKII---PNVVTYNSLIDGLCKSGKISY 342

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              L+  M + G  PD+ TY  +L+ +C     ++A   L ++ ++G  P++ TY   + 
Sbjct: 343 ALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILIN 402

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            LC     ++A  ++  ++  G   +V TY ++I ++   G    A     +M++ GC  
Sbjct: 403 GLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIP 462

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +  TY ++I  LFD  + ++A  LL E++ +GL
Sbjct: 463 NAVTYEIIIRSLFDKDENDKAEKLLLEMITRGL 495



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+I   + LLDALCK    D A  +  ++K++ ++PN  TY IL                
Sbjct: 357 PDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNI 416

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            E+++  G+  +  TY   I  FC   M  EA  +   M   G     P A TY I+I +
Sbjct: 417 FEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCI---PNAVTYEIIIRS 473

Query: 282 LVQNDRMEECFSLLGHMINSGCL 304
           L   D  ++   LL  MI  G L
Sbjct: 474 LFDKDENDKAEKLLLEMITRGLL 496


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 16/270 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P I   N L++  CK G V  A + +    K   KPN  TYN L                
Sbjct: 345 PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLL 404

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  ++  G  PD  TYN  +D FCK   +  A ++F  M + G     P   T+  +I  
Sbjct: 405 LRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL---EPDGFTFTALIDG 461

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+E+   +LG M+  G   D  T+  +++G C  GK ++     E M        
Sbjct: 462 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 521

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+NCFL  L  +   +EA  + G+M++ G  PSV T+ +LI  +   GE   + +   
Sbjct: 522 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 581

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            M + GC+ +V TY ++I+GL +  +VEEA
Sbjct: 582 RMKQAGCSPNVYTYTIIINGLCNNGRVEEA 611



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 128/266 (48%), Gaps = 25/266 (9%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           +++ALCK G V  AE  C +V                      +++G   D     + + 
Sbjct: 177 VVNALCKNGFVQAAEMFCCKV----------------------LRLGFGLDTHVCTSLVL 214

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             C+   + EA  +FE M  + +    P + TY+I+I  L +  R+EE F L   M+  G
Sbjct: 215 ANCRRDDLGEAFRVFEKMSKEENC--RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKG 272

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P   TY  +++  C  G  ++A K L+EM  K   P++ TY   +  LC     +EA 
Sbjct: 273 CQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 332

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++ +M++ G  P + T+N LI+ Y + G    AF+    M+K  C  ++ TY  +++GL
Sbjct: 333 GVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGL 392

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYR 448
              SK  +A  LL  VV+ GL LP R
Sbjct: 393 CRVSKSYKAFLLLRRVVDNGL-LPDR 417



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 127/298 (42%), Gaps = 16/298 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           +P     ++L+  LC+ G ++ A  + +  V+   +P+  TY +L             M+
Sbjct: 239 RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMK 298

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM      P+  TY   ID  C+   + EA  +F  M   G     P   T+  +I 
Sbjct: 299 MLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLC---PGIITFNALIN 355

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +   F LL  M    C P++ TY E++EG+C   K  +A+  L  + + G  P
Sbjct: 356 GYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLP 415

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTYN  +   C     + A  ++  M   G  P   T+  LI    +LG  + A    
Sbjct: 416 DRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGIL 475

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
             M K+G + D  T+  +IDG     K ++ CFL E +V          F+ +L  L 
Sbjct: 476 GSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 533



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 122/298 (40%), Gaps = 45/298 (15%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL----------- 217
           K   +P I   N L++ LC+      A  + +RV  N + P+  TYNIL           
Sbjct: 375 KGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLN 434

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------- 269
                   M   G  PD FT+   ID  CK   + +A  +   M  KG ++         
Sbjct: 435 MAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 494

Query: 270 -------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                     TA T+   + AL ++ ++ E  ++LG M+  G +
Sbjct: 495 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLV 554

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P V T+  ++EG C AG+   + K LE M   G  P++ TY   +  LC+N   +EA  +
Sbjct: 555 PSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 614

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              M   G  P+  TY +L+  + + G  D AF+    M K GC  +   Y  ++ G 
Sbjct: 615 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 672



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 18/295 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL--- 217
           LKQ  E ++   QP      +L+ A C  G+ D A  +   +  K   PN +TY IL   
Sbjct: 264 LKQ--EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDR 321

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                          +M++ G  P   T+N  I+ +CK   V  A  L   M  KG+   
Sbjct: 322 LCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVME-KGNC-- 378

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P  +TY  ++  L +  +  + F LL  ++++G LPD  TY  +++G C  G++  A+ 
Sbjct: 379 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 438

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               M + G  PD  T+   +  LC     ++A  + G M++ G      T+  LI  + 
Sbjct: 439 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 498

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++G+       +  M +  C     T+   +D L    K+ EA  +L +++  GL
Sbjct: 499 KIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 553



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 123/301 (40%), Gaps = 45/301 (14%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNF 235
           ++N  N +L  + K GLV    T    ++   +        L ++ LE M Q G +P+ +
Sbjct: 537 KLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA---LSLKMLERMKQAGCSPNVY 593

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY   I+  C    V EA  +   M + G    SP   TYA+++ A V+  R++  F ++
Sbjct: 594 TYTIIINGLCNNGRVEEAETILFSMSSFGV---SPNHFTYAVLVKAHVKAGRLDRAFQIV 650

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGK--------------------------------- 322
             M+ +GC P+   Y  +L G  L+                                   
Sbjct: 651 STMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVF 710

Query: 323 ----VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
               V+ A K  +E+   G P + + YN  +  LC      EA +L   M++ G +P  +
Sbjct: 711 RLMDVDHALKIRDEIKKCGVPTEDL-YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-K 768

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             + +I  Y +  + D   E    +          +YC +I GL +  +V+EA  L+ ++
Sbjct: 769 AISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 828

Query: 439 V 439
           V
Sbjct: 829 V 829



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 39/220 (17%)

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M   G  +S P    Y+ +++ L + +     F +   M+N G +     Y+ V+  +C 
Sbjct: 127 MTELGFRLSYPC---YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCK 183

Query: 320 AGKVE-----------------------------------EAYKFLEEMGN-KGYPPDIV 343
            G V+                                   EA++  E+M   +   P+ V
Sbjct: 184 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSV 243

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +  LC+    +EA +L   M+E GC PS +TY +LI    ++G  D A +   EM
Sbjct: 244 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 303

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             + C  +V TY ++ID L    K+EEA  +  +++  GL
Sbjct: 304 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 54/270 (20%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           LK      +    P +    ++++ LC  G V+ AETI   + +  V PN  TY +L   
Sbjct: 577 LKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 636

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFC------KARMVTEAADL------ 256
                      Q +  M++ G  P++  Y+  +  F        AR ++   DL      
Sbjct: 637 HVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLS 696

Query: 257 -------------FEFM--------RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
                        F  M        R +      PT   Y  ++V L +  R+ E   L 
Sbjct: 697 SEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLT 756

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+  G  PD      ++E  C   K +   +F++ + +  + P   +Y   +  L + 
Sbjct: 757 QDMVKHGLFPD-KAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 815

Query: 356 KNGDEALRLYGRMI-------EVGCWPSVQ 378
               EA +L   ++       EV   PS++
Sbjct: 816 GRVQEAQKLVSDLVRHTGIEEEVEVTPSIE 845



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 317 MCLA----GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           MCLA    G V  A+     M N+G+    + Y   +  LC N     A     +++ +G
Sbjct: 144 MCLAKLNMGFV--AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLG 201

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEA 431
                     L+       +   AF  + +M K   C  +  TY ++I GL +  ++EEA
Sbjct: 202 FGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEA 261

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             L +E+V KG +   R +   +     IG      K+ D M
Sbjct: 262 FQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 303


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 16/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQT 221
           P + + N L+   CK G VD A++  C  +K  + P+  +YNIL             ++ 
Sbjct: 268 PSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEF 327

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +M   G  PD  TYN   + F    +++ A  + + M   G    +P   TY I+I  
Sbjct: 328 TNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGL---NPDLVTYTILICG 384

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             Q   +EE F L   M++ G    + TY  +L  +C +G+++EA   L EM   G  PD
Sbjct: 385 HCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPD 444

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TY+  +  LC     +EA+ LY  M     +P+    + +IS  FE G    A   + 
Sbjct: 445 LLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFD 504

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            + K   A+++  Y +MIDG      + EA    ++++ KG+      F+S +      G
Sbjct: 505 SVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKG 564

Query: 462 DLGAIHKLSDHMR 474
            L    KL D ++
Sbjct: 565 KLAEAVKLLDTIK 577



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 16/288 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILG--------- 218
           IK    P++ + N+LL  LC  G ++ A      ++N  V+P+  TYNIL          
Sbjct: 297 IKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLI 356

Query: 219 ---MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               + ++ M+  G  PD  TY   I   C+   + E+  L E M ++G  +S     TY
Sbjct: 357 SGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLS---IVTY 413

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            +++ +L ++ R++E   LL  M   G  PD+ TY  ++ G+C  G VEEA +  EEM +
Sbjct: 414 TVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCS 473

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           K   P+    +  +  L +     EA   +  + +      +  YN++I  Y +LG    
Sbjct: 474 KRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGE 533

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           A  ++ ++ ++G +  + T+  +I G     K+ EA  LL+ +   GL
Sbjct: 534 AVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGL 581



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 124/292 (42%), Gaps = 25/292 (8%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
           +LL +LCK G +D A  +                      L EM  +G  PD  TY+  I
Sbjct: 415 VLLSSLCKSGRIDEAVIL----------------------LHEMEVIGLKPDLLTYSVLI 452

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
              CK   V EA +L+E M +K      P +   + +I  L +   + E       +  S
Sbjct: 453 HGLCKRGAVEEAIELYEEMCSKRIY---PNSFVCSAIISGLFEKGAISEAQMYFDSVTKS 509

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
               ++  Y  +++G    G + EA +  +++  KG  P IVT+N  +   C      EA
Sbjct: 510 DVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEA 569

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           ++L   +   G  P+  TY  L++ Y E G+    F+  HEM+ +       TY V++ G
Sbjct: 570 VKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKG 629

Query: 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           L    ++ E+  LL+ +  +GL      +++ +       DL    +L + M
Sbjct: 630 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQM 681



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 16/287 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           K     EI   N+++D   K G +  A    K++  K + P   T+N L           
Sbjct: 508 KSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLA 567

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             ++ L+ +   G  P + TY T ++ +C+   +    D+   M  K      PT  TY 
Sbjct: 568 EAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAI---KPTQITYT 624

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++  L +  R+ E   LL +M   G  PD  TY  V++  C A  +++A++   +M   
Sbjct: 625 VVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQH 684

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              P  VTYN  +  LC   N  +A RL   + +     +   Y  +I  +   G+   A
Sbjct: 685 SLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNA 744

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              +H+M +RG    +  Y  +I+ L   + + +A F    ++  G+
Sbjct: 745 LVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGI 791



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 24/320 (7%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYN 215
           +IL    E I +K  P++   ++L+  LCK G V+ A    E +C +   ++ PN+   +
Sbjct: 430 VILLHEMEVIGLK--PDLLTYSVLIHGLCKRGAVEEAIELYEEMCSK---RIYPNSFVCS 484

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            +                 + + +   A +   YN  ID + K   + EA   ++ +  K
Sbjct: 485 AIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEK 544

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G    SPT  T+  +I    +  ++ E   LL  +   G +P   TY  ++ G C  G +
Sbjct: 545 GI---SPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDM 601

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
              +  L EM  K   P  +TY   +K LC      E+++L   M   G +P   TYN +
Sbjct: 602 HSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTV 661

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I  + +  +   AF+  ++M +        TY V+I+GL     +++A  LL  + ++ +
Sbjct: 662 IQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSI 721

Query: 444 KLPYRKFDSYLMQLSVIGDL 463
           +L    + + +      GD+
Sbjct: 722 RLTKVAYTTIIKAHCAKGDV 741



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 86/184 (46%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           T  I+I  L +  R+++  + L         P V ++  ++ G C  G V+ A  F   M
Sbjct: 237 TNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMM 296

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  PD+ +YN  L  LC   + +EAL     M   G  P + TYN+L + +  LG  
Sbjct: 297 IKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLI 356

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
            GA++    M   G   D+ TY ++I G      +EE+  L E+++++GLKL    +   
Sbjct: 357 SGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVL 416

Query: 454 LMQL 457
           L  L
Sbjct: 417 LSSL 420



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 16/237 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQ 220
           ++ Y + I+    P I   N L+   CK G +  A  +   +K + + P + TY  L   
Sbjct: 535 VRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNG 594

Query: 221 TLEE-----MIQMGH-------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
             EE     M  M H        P   TY   +   CK   + E+  L ++M  +G    
Sbjct: 595 YCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLF-- 652

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I +  +   +++ F L   M+     P   TY  ++ G+C+ G +++A +
Sbjct: 653 -PDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADR 711

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
            L  + ++      V Y   +K  C   +   AL  + +M+E G   S++ Y+ +I+
Sbjct: 712 LLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVIN 768



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           +N  ++     + +A MV +A  LF   + K   +    A TY  ++  L   D M + +
Sbjct: 167 NNVVWDMLACAYSRAEMVHDA--LFVLAKMKVLNLQVSIA-TYNSLLYNLRHTDIMWDVY 223

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           +    +  SG   +  T   +++G+C   ++++A  FL E G + + P +V++N  +   
Sbjct: 224 N---EIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGF 280

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C   + D A   +  MI+ G  P V +YN+L+      G  + A E  ++M+  G   D+
Sbjct: 281 CKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDI 340

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            TY ++ +G      +  A  +++ ++  GL
Sbjct: 341 VTYNILANGFRILGLISGAWKVVQRMLLNGL 371


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 162/376 (43%), Gaps = 39/376 (10%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           A   F  A     YAH P  ++ ++  L   K      R+V    D M R  +     DV
Sbjct: 26  ALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGRIV----DLM-RAQRCTCSEDV 80

Query: 158 LLMILKQYTEKIKVKTQ---------------PEINALNLLLDALCKCGLVDYAETICKR 202
            L  +K Y  K  +  Q               P I + N +L+A  +      AE     
Sbjct: 81  ALSAIKAYA-KCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTY 139

Query: 203 VKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
            +   + PN  TYNIL            G   L  M + G  PD  +Y T I+   K+  
Sbjct: 140 FQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGN 199

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVS 308
           + +A +LF+ M  +G    +P    Y I+I   ++     +   +   ++  S   P V 
Sbjct: 200 LLDAVELFDEMSVRGV---NPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVE 256

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G+C  GK++E+ +    M      PD+ T++  +  L    N + A +++  M
Sbjct: 257 TYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEM 316

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           IE G  P V+TYN ++S  F  G+ +  FE W+ M K  C  ++ +Y ++I GL D  KV
Sbjct: 317 IESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLDNKKV 375

Query: 429 EEACFLLEEVVNKGLK 444
           E+A    + +  +GLK
Sbjct: 376 EQAICYWQLLHERGLK 391



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 25/263 (9%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
           LL++ LCK G ++ A                      ++ LEE    G   D F Y++ +
Sbjct: 399 LLINGLCKNGYLNKA----------------------LRILEEAENEGADLDTFAYSSMV 436

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
              CK  M+ +A +L   M+     ++S     +  +I   V+  ++EE  S+L  M + 
Sbjct: 437 HGLCKKGMLEQAVELIHQMKKNRRKLNS---HVFNSLINGYVRAFKLEEAISVLREMKSK 493

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
            C P V +Y  ++ G+C A +  +AY  L+EM  +G  PD++TY+  +  LC  +  D A
Sbjct: 494 DCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMA 553

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
           L L+ + I     P +Q +N++I       + D A E + +M +  C  D+ T+  +++G
Sbjct: 554 LNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEG 613

Query: 422 LFDCSKVEEACFLLEEVVNKGLK 444
           L+      EA  + + ++  GL+
Sbjct: 614 LYKAGDCVEALKIWDRILEAGLQ 636



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 4/248 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P   ++N+ ++ F ++    EA   F + +T G    SP  +TY I+I    +  + 
Sbjct: 109 GCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGM---SPNLQTYNILIKISCKKRQF 165

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E+   LL  M  +G  PD+ +Y  ++  +  +G + +A +  +EM  +G  PD++ YN  
Sbjct: 166 EKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNIL 225

Query: 349 LKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           +       +  +A  ++ R++ E   +PSV+TYN++I+   +LG+ D + E W+ M K  
Sbjct: 226 IDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNE 285

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
            + D+ T+  MI GL        A  + +E++  GL    R +++ L  L   G L    
Sbjct: 286 KSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCF 345

Query: 468 KLSDHMRK 475
           +L + M K
Sbjct: 346 ELWNVMSK 353



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 123/259 (47%), Gaps = 16/259 (6%)

Query: 179 ALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
           A + ++  LCK G+++ A E I +  KN+ K N++ +N L             +  L EM
Sbjct: 431 AYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREM 490

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
                AP   +YNT I+  CKA   ++A    + M  +G     P   TY+++I  L + 
Sbjct: 491 KSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGL---KPDMITYSLLIDGLCRG 547

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           ++++   +L    IN    PD+  +  ++ G+C A KV+ A +   +M      PD+VT+
Sbjct: 548 EKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTH 607

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  ++ L    +  EAL+++ R++E G  P + +YN+             A E  ++   
Sbjct: 608 NTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALD 667

Query: 406 RGCAQDVDTYCVMIDGLFD 424
           RG   +  T+ V++  + D
Sbjct: 668 RGILPNAPTWNVLVRAVVD 686



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 152/375 (40%), Gaps = 49/375 (13%)

Query: 94  EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV 153
           E ++ F +F  AG   N       YN++I I      K +QF     +L +M  N     
Sbjct: 132 EAELFFTYFQTAGMSPNLQ----TYNILIKI----SCKKRQFEKGKGLLTWMFENG---- 179

Query: 154 PVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNAN 212
                                P+I +   L++AL K G L+D  E   +     V P+  
Sbjct: 180 -------------------LNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVM 220

Query: 213 TYNIL--GMQTLEEMIQMGHA-----------PDNFTYNTAIDTFCKARMVTEAADLFEF 259
            YNIL  G     + ++               P   TYN  I+  CK   + E+ +++  
Sbjct: 221 CYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNR 280

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M+       SP   T++ MI  L +         +   MI SG  PDV TY  +L G+  
Sbjct: 281 MKKNEK---SPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFR 337

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
            GK+ + ++    M +K    +IV+YN  ++ L DNK  ++A+  +  + E G      T
Sbjct: 338 TGKLNKCFELWNVM-SKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTT 396

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           Y +LI+   + G  + A     E +  G   D   Y  M+ GL     +E+A  L+ ++ 
Sbjct: 397 YGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMK 456

Query: 440 NKGLKLPYRKFDSYL 454
               KL    F+S +
Sbjct: 457 KNRRKLNSHVFNSLI 471



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 87/195 (44%), Gaps = 16/195 (8%)

Query: 175 PEINALNLLLDALCKC-GLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P + + N +++ LCK     D   ++ + ++  +KP+  TY++L             +  
Sbjct: 497 PTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNL 556

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             + I     PD   +N  I   C A+ V  A ++F  MR        P   T+  ++  
Sbjct: 557 WHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCV---PDLVTHNTIMEG 613

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +     E   +   ++ +G  PD+ +Y    +G+C   +V +A +FL +  ++G  P+
Sbjct: 614 LYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPN 673

Query: 342 IVTYNCFLKVLCDNK 356
             T+N  ++ + D+K
Sbjct: 674 APTWNVLVRAVVDDK 688



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL- 217
           M L  + + I  + +P++   N+++  LC    VD A  I  +++     P+  T+N + 
Sbjct: 552 MALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIM 611

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       ++  + +++ G  PD  +YN      C    V++A    EF+      
Sbjct: 612 EGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDA---IEFLYDALDR 668

Query: 267 ISSPTAKTYAIMIVALVQNDRMEE 290
              P A T+ +++ A+V +  + E
Sbjct: 669 GILPNAPTWNVLVRAVVDDKPLME 692


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 16/317 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL-------GMQTLEEM 225
           +P++   N L+  LCK      AE  + K V   ++P++ TYN L       GM  L E 
Sbjct: 283 KPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAER 342

Query: 226 IQM-----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           I +     G  PD FTY + ID  C       A  LF     KG     P    Y  +I 
Sbjct: 343 ILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGI---KPNVILYNTLIK 399

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L     + E   L   M   G +P+V T+  ++ G+C  G V +A   ++ M +KGY P
Sbjct: 400 GLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFP 459

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI T+N  +         + AL +   M++ G  P V TYN L++   +  + +   ET+
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETY 519

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
             M ++GCA ++ T+ ++++ L    K+++A  LLEE+ NK +      F + +      
Sbjct: 520 KTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579

Query: 461 GDLGAIHKLSDHMRKFY 477
           GDL   + L   M + Y
Sbjct: 580 GDLDGAYTLFRKMEEVY 596



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           PE+   N+L++ LCK G V  A+ + K + +K   P+  T+NIL             ++ 
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+  G  PD +TYN+ ++  CK     +  + ++ M  KG    +P   T+ I++ +
Sbjct: 484 LDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGC---APNLFTFNILLES 540

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY--P 339
           L +  ++++   LL  M N    PD  T+  +++G C  G ++ AY    +M  + Y   
Sbjct: 541 LCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKM-EEVYMVS 599

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
               TYN  +    +  N   A +L+  M++    P   TY +++  + + G  D  ++ 
Sbjct: 600 CSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKF 659

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             EM + G    + T   +I+ L    +V EA  ++  +V KGL
Sbjct: 660 LLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGL 703



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 173/425 (40%), Gaps = 27/425 (6%)

Query: 46  DSVSDVAKLYEAIIDNSNAY---DNMEKAL----DSLGVPLTTDSVVGVLQRFQFEEKIA 98
           D        Y +II+    Y   + ME+ L     ++G  +     VG ++ +  + K+ 
Sbjct: 34  DGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRKGKVQ 93

Query: 99  FRFFMWAGHQDNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
               ++    D Y  EP   +YN ++ IL  + Y  +  ++      YM+  ++   P D
Sbjct: 94  EAVNVFE-RMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKV------YMRMRDRGITP-D 145

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI 216
           V    ++  +     +    +  LN +    C+  +V Y   +    +   K     Y +
Sbjct: 146 VYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEG--YEL 203

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
            G     +M+  G +    T+N  +   CK   V E   L + +  +G     P   TY 
Sbjct: 204 FG-----KMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVL---PNLFTYN 255

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
             I  L Q   ++    ++G +I+ G  PDV TY  ++ G+C   K +EA  +L ++ N+
Sbjct: 256 FFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNE 315

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD  TYN  +   C       A R+    +  G  P   TY  LI      GE + A
Sbjct: 316 GLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRA 375

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              ++E   +G   +V  Y  +I GL +   + EA  L  E+  KGL    + F+  +  
Sbjct: 376 LALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNG 435

Query: 457 LSVIG 461
           L  +G
Sbjct: 436 LCKMG 440



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 93/214 (43%), Gaps = 15/214 (7%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N LL+ LCK     D  ET    V+    PN  T+NIL             +  
Sbjct: 494 PDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGL 553

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM      PD  T+ T ID FCK   +  A  LF  M      + S +  TY I+I A
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE--VYMVSCSTPTYNIIIHA 611

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   +     L   M++    PD  TY+ +++G C  G V+  YKFL EM   G+ P 
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPS 671

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           + T    +  LC      EA  +  RM++ G  P
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%)

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GKV+EA    E M      P + +YN  + +L D+   D+A ++Y RM + G  P V ++
Sbjct: 90  GKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSF 149

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            + +  +     P  A    + M  +GC  +V  YC ++ G ++ +  +E   L  +++ 
Sbjct: 150 TIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLA 209

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            G+ L    F+  L  L   GD+    KL D + K
Sbjct: 210 SGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIK 244



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 21/199 (10%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-- 217
           +++ Y   ++    P +   N+LL++LC+   +D A  + + +KNK V P+A T+  L  
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLID 574

Query: 218 ---------GMQTL----EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
                    G  TL    EE+  +  +    TYN  I  F +   VT A  LF+ M  + 
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEVYMVSCSTP--TYNIIIHAFTEKLNVTMAEKLFQEMVDR- 631

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P   TY +M+    +   ++  +  L  M+ +G +P ++T   V+  +C+  +V 
Sbjct: 632 --CLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVY 689

Query: 325 EAYKFLEEMGNKGYPPDIV 343
           EA   +  M  KG  P+ V
Sbjct: 690 EAAGIIHRMVQKGLVPEAV 708



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 85/182 (46%)

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  +++E  ++   M    C P V +Y  ++  +  +G  ++A+K    M ++G  PD+ 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           ++   +K  C       ALRL   M   GC  +V  Y  ++  ++E    D  +E + +M
Sbjct: 148 SFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKM 207

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              G +  + T+  ++  L     V+E   LL++V+ +G+      ++ ++  L   G+L
Sbjct: 208 LASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGEL 267

Query: 464 GA 465
            A
Sbjct: 268 DA 269


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 130/271 (47%), Gaps = 16/271 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNILGMQTLE 223
           Y+E +  +  P +   N L+  LC  G L D    + K +   + P   T++IL     +
Sbjct: 232 YSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCK 291

Query: 224 E------------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
           E            M++    P+  TYN+ ++ +C    V +A  +F  M   G    +P 
Sbjct: 292 EGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGV---APD 348

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y+IMI    +   ++E   L   M      PDV TY  +++G+C +G++  A K + 
Sbjct: 349 VHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIG 408

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM ++G PP+I+TYN  L  LC N + D+A+ L  ++ +    PSV TYN+LI+   + G
Sbjct: 409 EMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSG 468

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               A + + ++   G   DV TY  MI G 
Sbjct: 469 RLKDAQKVFEDVLVNGYNIDVYTYNTMIKGF 499



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 133/291 (45%), Gaps = 24/291 (8%)

Query: 181 NLLLDALCKCGLVD-----YAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           N ++D +CK  LV+     Y+E + KR+     P   TYN L             +  L 
Sbjct: 213 NTIIDGVCKDKLVNDAFDFYSEMVAKRIC----PTVVTYNTLICGLCIMGQLKDAIGLLH 268

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +MI     P  +T++  +D FCK   V EA ++F  M  K      P   TY  ++    
Sbjct: 269 KMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDV---KPNIVTYNSLMNGYC 325

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
             + + +  S+   M   G  PDV +Y  ++ G C    V+EA K  EEM  K   PD+V
Sbjct: 326 LVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVV 385

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TYN  +  LC +     AL+L G M + G  P++ TYN L+    +    D A E   ++
Sbjct: 386 TYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKL 445

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
                   V TY ++I+GL    ++++A  + E+V+  G  +    +++ +
Sbjct: 446 KDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMI 496



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 25/260 (9%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           L++ LCK G    A  + +R+  K                  ++++    D   YNT ID
Sbjct: 180 LINGLCKVGQTKAALEMLRRIDGK------------------LVRL----DVVMYNTIID 217

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             CK ++V +A D +  M  K      PT  TY  +I  L    ++++   LL  MI   
Sbjct: 218 GVCKDKLVNDAFDFYSEMVAKRI---CPTVVTYNTLICGLCIMGQLKDAIGLLHKMILEN 274

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P V T+  +++  C  GKV+EA      M  K   P+IVTYN  +   C     ++A 
Sbjct: 275 INPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAE 334

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++  M ++G  P V +Y+++IS + ++   D A + + EM  +    DV TY  +IDGL
Sbjct: 335 SIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394

Query: 423 FDCSKVEEACFLLEEVVNKG 442
               ++  A  L+ E+ ++G
Sbjct: 395 CKSGRISYALKLIGEMHDRG 414



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 16/231 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQ 220
            P +   ++L+DA CK G V  A+ +    +K  VKPN  TYN L               
Sbjct: 276 NPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAES 335

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M Q+G APD  +Y+  I  FCK +MV EA  LFE M  K      P   TY  +I 
Sbjct: 336 IFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIF---PDVVTYNSLID 392

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R+     L+G M + G  P++ TY  +L+ +C    V++A + L ++ +    P
Sbjct: 393 GLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQP 452

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            + TYN  +  LC +    +A +++  ++  G    V TYN +I  + + G
Sbjct: 453 SVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKG 503



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 3/216 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++++ +G   +  +Y T I+  CK    T+AA   E +R     +       Y  +I  +
Sbjct: 163 DKVLALGFQLNQVSYRTLINGLCKVGQ-TKAA--LEMLRRIDGKLVRLDVVMYNTIIDGV 219

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++  + + F     M+     P V TY  ++ G+C+ G++++A   L +M  +   P +
Sbjct: 220 CKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTV 279

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T++  +   C      EA  ++  M++    P++ TYN L++ Y  + E + A   ++ 
Sbjct: 280 YTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNT 339

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           M + G A DV +Y +MI G      V+EA  L EE+
Sbjct: 340 MAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEM 375



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
           AN Y+I+ +    +M   G A +  T +  I+ F +    + +  +F  +  KG     P
Sbjct: 82  ANHYSIV-VSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGY---EP 137

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
            A T   +I  L     + +       ++  G   +  +Y+ ++ G+C  G+ + A + L
Sbjct: 138 DAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEML 197

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             +  K    D+V YN  +  +C +K  ++A   Y  M+     P+V TYN LI     +
Sbjct: 198 RRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIM 257

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G+   A    H+M        V T+ +++D      KV+EA
Sbjct: 258 GQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEA 298



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           ++   P++++ ++++   CK  +VD A  + + +  K + P+  TYN L           
Sbjct: 342 QIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRIS 401

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             ++ + EM   G  P+  TYN+ +D  CK   V +A +L    + K   I  P+  TY 
Sbjct: 402 YALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLT--KLKDHNIQ-PSVCTYN 458

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           I+I  L ++ R+++   +   ++ +G   DV TY  +++G C  G V
Sbjct: 459 ILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 4/205 (1%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P+   +  ++ +LV+ +      SL   M  +G   ++ T   ++      G    ++ 
Sbjct: 66  TPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFS 125

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               +  KGY PD +T    +K LC   +  +AL  + +++ +G   +  +Y  LI+   
Sbjct: 126 VFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLC 185

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++G+   A E    +D +    DV  Y  +IDG+     V +A     E+V K +     
Sbjct: 186 KVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVV 245

Query: 449 KFDSYLMQLSVIGDL----GAIHKL 469
            +++ +  L ++G L    G +HK+
Sbjct: 246 TYNTLICGLCIMGQLKDAIGLLHKM 270


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 146/322 (45%), Gaps = 16/322 (4%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL-------GMQ 220
           I+   +P++   N L+  LCK      AE  + K V   ++P++ TYN L       GM 
Sbjct: 278 IEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMV 337

Query: 221 TLEEMIQM-----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
            L E I       G  PD FTY + ID  C       A  LF     KG     P    Y
Sbjct: 338 QLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGI---KPNVILY 394

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I  L     + E   L   M   G +P+V T+  ++ G+C  G V +A   ++ M +
Sbjct: 395 NTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS 454

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KGY PDI T+N  +         + AL +   M++ G  P V TYN L++   +  + + 
Sbjct: 455 KGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFED 514

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
             ET+  M ++GCA ++ T+ ++++ L    K++EA  LLEE+ NK +      F + + 
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLID 574

Query: 456 QLSVIGDLGAIHKLSDHMRKFY 477
                GDL   + L   M + Y
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEAY 596



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           PE+   N+L++ LCK G V  A+ + K + +K   P+  T+NIL             ++ 
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+  G  PD +TYN+ ++  CK     +  + ++ M  KG    +P   T+ I++ +
Sbjct: 484 LDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC---APNLFTFNILLES 540

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY--P 339
           L +  +++E   LL  M N    PD  T+  +++G C  G ++ AY    +M  + Y   
Sbjct: 541 LCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKM-EEAYKVS 599

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
               TYN  +    +  N   A +L+  M++    P   TY +++  + + G  +  ++ 
Sbjct: 600 SSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKF 659

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             EM + G    + T   +I+ L    +V EA  ++  +V KGL
Sbjct: 660 LLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGL 703



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 175/416 (42%), Gaps = 27/416 (6%)

Query: 55  YEAIIDNSNAY---DNMEKAL----DSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           Y ++I+    Y   + ME+ L    +++G  +     VG ++ +  + K+     ++   
Sbjct: 43  YRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFE-R 101

Query: 108 QDNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165
            D Y  EP   +YN ++ +L  + Y  +  ++      YM+  ++   P DV    ++  
Sbjct: 102 MDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKV------YMRMRDRGITP-DVYSFTIRMK 154

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           +     +    +  LN +    C+  +V Y   +    +   K  A  Y + G     +M
Sbjct: 155 SFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFK--AEGYELFG-----KM 207

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G +    T+N  +   CK   V E   L + +  +G     P   TY + I  L Q 
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVL---PNLFTYNLFIQGLCQR 264

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             ++    ++G +I  G  PDV TY  ++ G+C   K +EA  +L +M N+G  PD  TY
Sbjct: 265 GELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTY 324

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +   C       A R+ G  +  G  P   TY  LI      GE + A   ++E   
Sbjct: 325 NTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALG 384

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +G   +V  Y  +I GL +   + EA  L  E+  KGL    + F+  +  L  +G
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMG 440



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 94/214 (43%), Gaps = 15/214 (7%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++   N LL+ LCK     D  ET    V+    PN  T+NIL             +  
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGL 553

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM      PD  T+ T ID FCK   +  A  LF  M  +   +SS T  TY I+I A
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKME-EAYKVSSSTP-TYNIIIHA 611

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   +     L   M++    PD  TY+ +++G C  G V   YKFL EM   G+ P 
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           + T    +  LC      EA  +  RM++ G  P
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%)

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GKV+EA    E M      P + +YN  + VL D+   D+A ++Y RM + G  P V ++
Sbjct: 90  GKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSF 149

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            + +  + +   P  A    + M  +GC  +V  YC ++ G ++ +   E   L  +++ 
Sbjct: 150 TIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLA 209

Query: 441 KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            G+ L    F+  L  L   GD+    KL D + K
Sbjct: 210 SGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK 244



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 17/201 (8%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-- 217
           +++ Y   ++    P +   N+LL++LC+   +D A  + + +KNK V P+A T+  L  
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLID 574

Query: 218 ---------GMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                    G  TL   ++  +  +    TYN  I  F +   VT A  LF+ M  +   
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR--- 631

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P   TY +M+    +   +   +  L  M+ +G +P ++T   V+  +C+  +V EA
Sbjct: 632 CLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEA 691

Query: 327 YKFLEEMGNKGYPPDIVTYNC 347
              +  M  KG  P+ V   C
Sbjct: 692 AGIIHRMVQKGLVPEAVNTIC 712



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 1/185 (0%)

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  +++E  ++   M    C P V +Y  ++  +  +G  ++A+K    M ++G  PD+ 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           ++   +K  C       ALRL   M   GC  +V  Y  ++  ++E       +E + +M
Sbjct: 148 SFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKM 207

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              G +  + T+  ++  L     V+E   LL++V+ +G+      ++ ++  L   G+L
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGEL 267

Query: 464 -GAIH 467
            GA+ 
Sbjct: 268 DGAVR 272


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 15/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVK 208
           K F     L   L  + +  K+   P++     LL  LC    V  A +   +  +   +
Sbjct: 122 KCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCR 181

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  T+  L             +  L+ M++ G  P   TY T +D  CK      A +L
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
              M      I  P    Y+ +I +L ++ R  +  +L   M   G  PD+ TY  ++ G
Sbjct: 242 LRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C +G+  +A + L+EM  +   PD+VTYN  +          EA  LY  M+  G  P+
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
             TY+ +I  + +    D A   ++ M  +GC+ ++ T+  +IDG     ++++   LL 
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+   GL      +++ +    ++GDL A   L   M
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 17/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           L  + +  +   +P +     L++ LC+ G +  A  +  R+ ++ ++P   TY  +   
Sbjct: 169 LDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 218 ---------GMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                     +  L +M ++ H  P+   Y+  ID+ CK    ++A +LF  M+ KG   
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF- 287

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P   TY  MIV    + R  +   LL  M+     PDV TY  ++      GK  EA 
Sbjct: 288 --PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           +  +EM  +G  P+ +TY+  +   C     D A  ++  M   GC P++ T+N LI  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 D   E  HEM + G   D  TY  +I G +    +  A  LL+E+++ GL
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 21/286 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
            P +   N L+D  C    +D   E + +  +  +  +  TYN L             + 
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS--------PTA 272
            L+EMI  G  PD  T +T +D  C    + +A ++F+ M+     + +        P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           +TY I+I  L+   +  E   L   M + G +PD  TY  +++G+C   +++EA +  + 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           MG+K + P++VT+   +   C     D+ L L+  M   G   +  TY  LI  + ++G 
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +GA + + EM   G   D  T   M+ GL+   +++ A  +LE++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 27/303 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y E +     P     + ++D  CK   +D AE +   +  K   PN  T+N L      
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 GM+ L EM + G   D  TYNT I  F     +  A DL + M + G     P 
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL---CPD 464

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLEGMCLA 320
             T   ++  L  N ++++   +   M  S           G  PDV TY  ++ G+   
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
           GK  EA +  EEM ++G  PD +TY+  +  LC     DEA +++  M      P+V T+
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             LI+ Y + G  D   E + EM +RG   +  TY  +I G      +  A  + +E+++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 441 KGL 443
            G+
Sbjct: 645 SGV 647



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 17/272 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL------------GM 219
           QP       ++D +CK G    A  + ++++  + + PN   Y+ +              
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM + G  PD FTYN+ I  FC +   ++A  L + M  +     SP   TY  +I
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI---SPDVVTYNALI 332

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A V+  +  E   L   M+  G +P+  TY  +++G C   +++ A      M  KG  
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++T+N  +   C  K  D+ + L   M E G      TYN LI  ++ +G+ + A + 
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             EM   G   D+ T   ++DGL D  K+++A
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 5/180 (2%)

Query: 244 FCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           F + + + +A DLF + +R++      P+   +  ++  +V+ +R +   SL   M    
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSR----PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
              D+ ++  +++  C   K+  A     ++   G  PD+VT+   L  LC      EAL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             + +M E  C P+V T+  L++     G    A      M + G      TY  ++DG+
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229


>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 507

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 187/413 (45%), Gaps = 37/413 (8%)

Query: 79  LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV 138
           ++ +S V +++R + + + A   F  A  Q  + H    Y++++D L     + K+F  V
Sbjct: 55  ISHESTVSLMKR-ERDPQRALDIFNKASQQKGFNHNNATYSVLLDNL----VRHKKFLAV 109

Query: 139 CSMLDYMKRNNKVFVPVDVLLMILKQYTE--------------KIKVKTQPEINALNLLL 184
            ++L  MK     F    + L +++ ++               ++  + +P +NA++  L
Sbjct: 110 DAILHQMKYETCRFQE-SLFLNLMRHFSRFDLHDKVMEMFNLIQVIARVKPSLNAISTCL 168

Query: 185 DALCKCGLVDYAETICKRVKNKV--KPNANTYNIL------------GMQTLEEMIQMGH 230
           + L   G VD A  +    K+ +  +PN   +NIL              + +EEM + G 
Sbjct: 169 NLLIDSGEVDLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGI 228

Query: 231 A-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           + P++ TY+T +D         EA +LFE M +K     SP    + +MI    ++  +E
Sbjct: 229 SYPNSITYSTLMDCLFAQSRSKEAVELFEDMISKRGI--SPDPVIFNVMINGFCRSGEVE 286

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +L  M  +GC P+V  Y  ++ G C  GK++EA +  +E+   G   D V Y   +
Sbjct: 287 RAKMILDFMKKNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLM 346

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC N   DEA++L G M    C     TYN+++      G  + A +   +    G  
Sbjct: 347 NCLCRNGEIDEAMKLLGEMKASRCRADALTYNVILRGLSSEGRSEEALQMLDQWGCEGVH 406

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
            +  +Y ++++ L    ++E+A   L  +  +G+   +  ++  +++L   G+
Sbjct: 407 LNKGSYRIILNALCCNGELEKAVKFLSVMSKRGIWPHHATWNELVVRLCESGN 459



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 47/268 (17%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GM 219
           QP     N+L+   CK G +D A  + + +K      PN+ TY+ L             +
Sbjct: 194 QPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKEAV 253

Query: 220 QTLEEMI-QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------------- 264
           +  E+MI + G +PD   +N  I+ FC++  V  A  + +FM+  G              
Sbjct: 254 ELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALMNG 313

Query: 265 ----------STISSPTAKT--------YAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
                       +     KT        Y  ++  L +N  ++E   LLG M  S C  D
Sbjct: 314 FCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRAD 373

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             TY  +L G+   G+ EEA + L++ G +G   +  +Y   L  LC N   ++A++   
Sbjct: 374 ALTYNVILRGLSSEGRSEEALQMLDQWGCEGVHLNKGSYRIILNALCCNGELEKAVKFLS 433

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPD 394
            M + G WP   T+N L+    E G  +
Sbjct: 434 VMSKRGIWPHHATWNELVVRLCESGNTE 461


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 133/307 (43%), Gaps = 48/307 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
            P++   N+L+ +LC  G +D A  +  ++ ++   P   TY IL             M+
Sbjct: 178 SPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMR 237

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            L+EM+  G  PD +TYN  +   CK  +V  A   FEF+    +T S            
Sbjct: 238 LLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRA---FEFVSNLNTTPSLNLYNLLLKGLL 294

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY+++I +L ++ +  E   +L  M   G  PD  
Sbjct: 295 NEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAY 354

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            Y  ++   C  GKV+ A  F+++M + G+ PDIV YN  +  LC     DEAL ++ ++
Sbjct: 355 CYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKL 414

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
            EVGC P+  +YN +    +  G+   A     EM   G   D  TY  +I  L     V
Sbjct: 415 EEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMV 474

Query: 429 EEACFLL 435
           +EA  LL
Sbjct: 475 DEAIGLL 481



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 125/279 (44%), Gaps = 13/279 (4%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----------GMQTLE 223
           QP++   N+++  +CK GLVD A      +      N     +           G + + 
Sbjct: 248 QPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMS 307

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +MI  G  P+  TY+  I + C+     EA D+   M+ KG    +P A  Y  +I A  
Sbjct: 308 DMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGL---NPDAYCYDPLISAFC 364

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  +++     +  MI++G LPD+  Y  ++  +C  G+ +EA    +++   G PP+  
Sbjct: 365 KEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNAS 424

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           +YN     L  + +   AL +   M+  G  P   TYN LIS     G  D A     +M
Sbjct: 425 SYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDM 484

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           ++      V +Y +++ GL    ++ +A  +L  +V+ G
Sbjct: 485 ERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNG 523



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 16/224 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P I   ++L+ +LC+ G    A  + + +K K + P+A  Y+ L             + 
Sbjct: 315 EPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIG 374

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            +++MI  G  PD   YNT + + CK     EA ++F+ +   G     P A +Y  M  
Sbjct: 375 FVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGC---PPNASSYNTMFG 431

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL  +       +++  M+++G  PD  TY  ++  +C  G V+EA   L +M    + P
Sbjct: 432 ALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQP 491

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
            +++YN  L  LC      +A+ +   M++ GC P+  TY +L+
Sbjct: 492 TVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLV 535



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 4/192 (2%)

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
           A++  CK    TEA    E M  +G     P       +I  L  + R E+   ++  + 
Sbjct: 83  ALNRLCKTGKYTEALYFLEQMVKRGY---KPDVILCTKLIKGLFTSKRTEKAVRVMEILE 139

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             G  PD   Y  V+ G C + + + A + +  M  +G+ PD+VTYN  +  LC     D
Sbjct: 140 QYGD-PDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLD 198

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            AL++  +++E  C P+V TY +LI      G  D A     EM  RG   D+ TY V++
Sbjct: 199 LALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIV 258

Query: 420 DGLFDCSKVEEA 431
            G+     V+ A
Sbjct: 259 RGMCKRGLVDRA 270



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 16/160 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN------------ILGMQT 221
           P+I   N ++ +LCK G  D A  I K+++     PNA++YN            I  +  
Sbjct: 386 PDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTM 445

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + EM+  G  PD  TYN+ I + C+  MV EA  L   M     T   PT  +Y I+++ 
Sbjct: 446 ILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDME---RTEWQPTVISYNIVLLG 502

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           L +  R+ +   +L  M+++GC P+ +TY  ++EG+  AG
Sbjct: 503 LCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAG 542



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 36/254 (14%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE+M++ G+ PD       I     ++   +A  + E +   G     P +  Y  +I  
Sbjct: 100 LEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYGD----PDSFAYNAVISG 155

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++DR +    ++  M   G  PDV TY  ++  +C  GK++ A K ++++      P 
Sbjct: 156 FCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPT 215

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE--- 398
           ++TY   ++    + + D+A+RL   M+  G  P + TYN+++    + G  D AFE   
Sbjct: 216 VITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVS 275

Query: 399 ----------------------TWH-------EMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
                                  W        +M  +GC  ++ TY V+I  L    K  
Sbjct: 276 NLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAG 335

Query: 430 EACFLLEEVVNKGL 443
           EA  +L  +  KGL
Sbjct: 336 EAVDVLRVMKEKGL 349


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 144/335 (42%), Gaps = 26/335 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDAL--CKCG-----LVDYAETICKRVKNKVKPNANTY 214
           LK + E +       + A N LL A+   +C       V +   + +   +KV PN  TY
Sbjct: 34  LKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLCTY 93

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMR 261
           +IL            G      +++ G   D+   N  +   C  + V EA D L + M 
Sbjct: 94  SILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMP 153

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG---CLPDVSTYKEVLEGMC 318
             G     P   +Y I++  L    R EE   LL  M +     C P+V +Y  V+ G  
Sbjct: 154 ELGCM---PDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFF 210

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             G+V++ Y    EM ++G PPD+VTY   +  LC  +  D A  ++ +MI+ G  P+  
Sbjct: 211 TEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNY 270

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TYN LI  Y  +G+     +   EM  RG   D  TY  +++ L    +  EA F  + +
Sbjct: 271 TYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSM 330

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           + KG+K     +   +   +  G L  +H   D M
Sbjct: 331 IRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLM 365



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 127/283 (44%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GMQTLE------- 223
            P +     L+DALCK G VD AE    ++ N+ V PN   +N L  G+ T++       
Sbjct: 406 SPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEE 465

Query: 224 ---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+  G  P+   +NT I   C    V E   L + M   G     P A +Y  +I 
Sbjct: 466 LVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGV---RPDAFSYTPLIS 522

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 R +E   +   M++ G  P   TY  +L G C A ++++AY    EM  KG  P
Sbjct: 523 GYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTP 582

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            +VTYN  L  L   K   EA  LY  MI  G    + TYN++++   +    D AF+ +
Sbjct: 583 GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMF 642

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +  +G   ++ T+ +MI  L    + E+A  L   +   GL
Sbjct: 643 QSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGL 685



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 16/285 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
            P+ +  N+   A  KCG++D A  I  +++ + + PN   Y  L               
Sbjct: 371 SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 430

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI  G  P+   +N+ +   C       A +L   M  +G     P A  +  +I 
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC---PNAVFFNTLIC 487

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L    R+ E   L+  M + G  PD  +Y  ++ G CL G+ +EA K  + M + G  P
Sbjct: 488 NLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSP 547

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             VTYN  L   C     D+A  L+  M+  G  P V TYN ++   F+      A E +
Sbjct: 548 TEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELY 607

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             M   G   D+ TY ++++GL   + V+EA  + + + +KGL+L
Sbjct: 608 LNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQL 652



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 127/293 (43%), Gaps = 16/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
           + E I     P++     ++D LCK  L D AE + ++ + N  KPN  TYN L      
Sbjct: 222 FLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLS 281

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +Q LEEM   G  PD +TY + ++  CK     EA   F+ M  KG     P 
Sbjct: 282 IGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGI---KPK 338

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY I+I        + E  S L  M+ +G  PD   +          G +++A     
Sbjct: 339 VSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFN 398

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M   G  P++V Y   +  LC     D+A   + +MI  G  P++  +N L+     + 
Sbjct: 399 KMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVD 458

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           + + A E  +EM  +G   +   +  +I  L +  +V E   L++ + + G++
Sbjct: 459 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVR 511



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 16/313 (5%)

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----- 217
           ++ + I     P I   N L+  LC     + AE +   + ++ + PNA  +N L     
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLC 490

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                  G + ++ M  +G  PD F+Y   I  +C      EA  +F+ M + G    SP
Sbjct: 491 NVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGL---SP 547

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T  TY  ++       R+++ + L   M+  G  P V TY  +L G+    +  EA +  
Sbjct: 548 TEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELY 607

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             M N G   DI TYN  L  LC +   DEA +++  +   G   ++ T+ ++I    + 
Sbjct: 608 LNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKG 667

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G  + A + +  +   G   +V TY ++ + L +   +EE   L   +   G     +  
Sbjct: 668 GRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQML 727

Query: 451 DSYLMQLSVIGDL 463
           ++ + +L   GD+
Sbjct: 728 NALVRRLLHRGDI 740



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 110/254 (43%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M ++G  PD  +Y   +   C  +   EA +L   M         P   +Y+I+I  
Sbjct: 149 LQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVING 208

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                ++++ ++L   MI+ G  PDV TY  V++G+C A   + A    ++M + G+ P+
Sbjct: 209 FFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPN 268

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYNC +          E +++   M   G  P   TY  L++   + G    A   + 
Sbjct: 269 NYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFD 328

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M ++G    V TY ++I G      + E    L+ +V  GL   +  F+ +    +  G
Sbjct: 329 SMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCG 388

Query: 462 DLGAIHKLSDHMRK 475
            +     + + MR+
Sbjct: 389 MIDKAMDIFNKMRQ 402



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 119/293 (40%), Gaps = 51/293 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P     N L+  LC  G V     +   +++  V+P+A +Y  L              + 
Sbjct: 477 PNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKV 536

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            + M+ +G +P   TYNT +  +C A  + +A  LF  M  KG T   P   TY  ++  
Sbjct: 537 FDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVT---PGVVTYNTILHG 593

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-- 339
           L Q  R  E   L  +MINSG   D+ TY  +L G+C +  V+EA+K  + + +KG    
Sbjct: 594 LFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN 653

Query: 340 ---------------------------------PDIVTYNCFLKVLCDNKNGDEALRLYG 366
                                            P++VTY    + L +  + +E   L+ 
Sbjct: 654 IITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFS 713

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            M + G  P+ Q  N L+      G+   A     ++D+R  + +  T  +++
Sbjct: 714 AMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLM 766



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 16/238 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQT 221
           K +   + +   P     N LL   C    +D A  + + +  K V P   TYN +    
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594

Query: 222 LE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
            +             MI  G   D +TYN  ++  CK+  V EA  +F+ + +KG  ++ 
Sbjct: 595 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN- 653

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
               T+ IMI AL++  R E+   L   +  +G +P+V TY+ V E +   G +EE    
Sbjct: 654 --IITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSL 711

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              M   G  P+    N  ++ L    +   A     ++ E        T ++L+S++
Sbjct: 712 FSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIF 769


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------ 217
           + E +K +  P I   + LL A+ K    D   ++ ++++N   P N  TY+IL      
Sbjct: 69  FGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCR 128

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ P+  T ++ ++ +C ++ ++EA  L + M   G     P 
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY---QPN 185

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G  + A+  L 
Sbjct: 186 TVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLN 245

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M      P ++ Y   +  LC NK+ D+AL L+  M   G  P+V TY+ LIS     G
Sbjct: 246 KMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 305

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    DV T+  +ID      K+ EA  L +E+V + +
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 16/286 (5%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
           K +P +     ++D LCK   +D A  + K ++ K ++PN  TY+ L             
Sbjct: 251 KLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + L +MI+    PD FT++  ID F K   + EA  L++ M  +      P+  TY+ +
Sbjct: 311 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI---DPSIVTYSSL 367

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I     +DR++E   +   M++  C PDV +Y  +++G C A +V+E  +   EM  +G 
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             + VTY   ++ L    + D A  ++  M+  G  P++ TYN L+    + G+ + A  
Sbjct: 428 VGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +  + +      + TY +MI+G+    KVE+   L   +  KG+K
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 130/290 (44%), Gaps = 25/290 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP++    ++++ LCK G  D A  +                      L +M Q    P 
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFIL----------------------LNKMEQGKLEPG 255

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
              Y T ID  CK + + +A +LF+ M TKG     P   TY+ +I  L    R  +   
Sbjct: 256 VLIYTTIIDGLCKNKHMDDALNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASR 312

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  MI     PDV T+  +++     GK+ EA K  +EM  +   P IVTY+  +   C
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            +   DEA +++  M+   C+P V +Y+ LI  + +    D   E + EM +RG   +  
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           TY  +I GLF     + A  + +E+V+ G+      +++ L  L   G L
Sbjct: 433 TYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 132/304 (43%), Gaps = 45/304 (14%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------- 217
           ++ I+ K  P++   + L+DA  K G LV+  +   + VK  + P+  TY+ L       
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---STIS- 268
                  Q  E M+     PD  +Y+T I  FCKA+ V E  +LF  M  +G   +T++ 
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTY 434

Query: 269 ----------------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                        P   TY  ++  L +N ++E+   +  ++  
Sbjct: 435 TTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S   P + TY  ++EGMC AGKVE+ +     +  KG  PD+V YN  +   C   + +E
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 554

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L+  M E G  P+   YN LI      G+ + + E   EM   G A D  T  ++ +
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614

Query: 421 GLFD 424
            L D
Sbjct: 615 MLHD 618



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+I+I    +  ++    ++LG M+  G  P++ T   +L G C + ++ EA   +++M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY P+ VT+N  +  L  +    EA+ L  RM+  GC P + TY ++++   + G+ 
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D AF   ++M++      V  Y  +IDGL     +++A  L +E+  KG++     + S 
Sbjct: 238 DLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSL 297

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +  L   G    A   LSD + +  NP
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINP 324



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 111/253 (43%), Gaps = 3/253 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M  +G   +++TY+  I+ FC+   +  A  +   M   G     P   T + ++   
Sbjct: 105 EQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY---EPNIVTLSSLLNGY 161

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             + R+ E  +L+  M  +G  P+  T+  ++ G+ L  K  EA   ++ M  KG  PD+
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDL 221

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   + D A  L  +M +    P V  Y  +I    +    D A   + E
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKE 281

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   +V TY  +I  L +  +  +A  LL +++ + +      F + +      G 
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341

Query: 463 LGAIHKLSDHMRK 475
           L    KL D M K
Sbjct: 342 LVEAEKLYDEMVK 354



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 16/187 (8%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           L+  L + G  D A+ I K  V + V PN  TYN L             M   E + +  
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             P  +TYN  I+  CKA  V +  DLF  +  KG     P    Y  MI    +    E
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV---KPDVVAYNTMISGFCRKGSKE 553

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  +L   M   G LP+   Y  ++      G  E + + ++EM + G+  D  T     
Sbjct: 554 EADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVT 613

Query: 350 KVLCDNK 356
            +L D +
Sbjct: 614 NMLHDGR 620



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           ++++  +L G M+ S   P +  + ++L  +    K +      E+M N G P +  TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +   C       AL + G+M+++G  P++ T + L++ Y        A     +M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G   +  T+  +I GLF  +K  EA  L++ +V KG
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKG 216


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 150/326 (46%), Gaps = 35/326 (10%)

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197
           V S+++   + N+VF  VD++       ++  +++ + ++   N ++D  CK GLV+ A 
Sbjct: 142 VSSLINGFCQGNRVFGAVDLV-------SKMEEMRCKLDVVIYNTIIDGFCKTGLVNNAL 194

Query: 198 TICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
            +  R++                        G   D  TYN+ +   C +   ++AA L 
Sbjct: 195 VLFGRMERD----------------------GVRADTVTYNSLVTGLCCSGRRSDAARLM 232

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M  +      P   T+  +I A V+  +  E       MI     PDV TY  ++ G+
Sbjct: 233 RDMVMRDIV---PNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGL 289

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C+ G+V+EA + L+ M  KG  PD+VTYN  +   C  K  DE  +L   M + G     
Sbjct: 290 CMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDT 349

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            T+N +I  YF+ G PD A E +  M  R    ++ TY +++ GL    +VE+A  L E 
Sbjct: 350 VTFNTIIQGYFQAGRPDAAQEIFSRMGSR---PNIRTYSILLYGLCYNWRVEKALVLFES 406

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +    ++L    ++  +  + +IG++
Sbjct: 407 MQKSEMELDITTYNIVIHGMCMIGNV 432



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 128/293 (43%), Gaps = 33/293 (11%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN-----------KVFVPV 155
            +D    + + YN ++  L  +  ++   RL   M D + R+              FV  
Sbjct: 201 ERDGVRADTVTYNSLVTGLCCSGRRSDAARL---MRDMVMRDIVPNVITFTALINAFVRE 257

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY 214
              L   K Y E I+    P++   N ++  LC  G VD A+ I   +  K   P+  TY
Sbjct: 258 GKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTY 317

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L            G + + EM Q G   D  T+NT I  + +A     A ++F  M +
Sbjct: 318 NTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGS 377

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           +      P  +TY+I++  L  N R+E+   L   M  S    D++TY  V+ GMC+ G 
Sbjct: 378 R------PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGN 431

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           VE+A+     +  KG  PD+VTY   +   C  +  D+A  LY +M E G  P
Sbjct: 432 VEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 9/242 (3%)

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL---FEFMRTKGSTISSPTA 272
           ++ +  + +M++ G+ PD  T ++ I+ FC+   V  A DL    E MR K   +     
Sbjct: 121 VIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVV----- 175

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  +I    +   +     L G M   G   D  TY  ++ G+C +G+  +A + + +
Sbjct: 176 -IYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRD 234

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M  +   P+++T+   +          EA + Y  MI     P V TYN +I      G+
Sbjct: 235 MVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQ 294

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            D A +    M  +GC  DV TY  +I+G     +V+E   L+ E+  +GL +    F++
Sbjct: 295 VDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNT 354

Query: 453 YL 454
            +
Sbjct: 355 II 356



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 14/319 (4%)

Query: 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLL 183
           I  S   KAK+F  +C     +++ N+V  P           T+++ +     I+    +
Sbjct: 5   ITISIASKAKKFLNLC----LLEKGNRVTAPFISRFWGRAFTTKRLSMNLDEAIDLFCNM 60

Query: 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243
           + +     +V++++ +    K+K     N   ++ +    E+  +GH  D +TYN  I+ 
Sbjct: 61  IQSRPLPSIVEFSKLLSNIAKSK-----NYDLVISLFHNMEICGIGH--DLYTYNIVINC 113

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C+      A  +   M   G     P   T + +I    Q +R+     L+  M    C
Sbjct: 114 LCRCSRFVIALSVVGKMMKFGY---EPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRC 170

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
             DV  Y  +++G C  G V  A      M   G   D VTYN  +  LC +    +A R
Sbjct: 171 KLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAAR 230

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L   M+     P+V T+  LI+ +   G+   A + + EM +R    DV TY  MI GL 
Sbjct: 231 LMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLC 290

Query: 424 DCSKVEEACFLLEEVVNKG 442
              +V+EA  +L+ +V KG
Sbjct: 291 MHGQVDEAKQILDLMVTKG 309



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 16/204 (7%)

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
           AID FC          + EF +   +   S   K Y  ++++L  N  ME C   +GH  
Sbjct: 53  AIDLFCNMIQSRPLPSIVEFSKLLSNIAKS---KNYD-LVISLFHN--MEICG--IGH-- 102

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
                 D+ TY  V+  +C   +   A   + +M   GY PD+VT +  +   C      
Sbjct: 103 ------DLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVF 156

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A+ L  +M E+ C   V  YN +I  + + G  + A   +  M++ G   D  TY  ++
Sbjct: 157 GAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLV 216

Query: 420 DGLFDCSKVEEACFLLEEVVNKGL 443
            GL    +  +A  L+ ++V + +
Sbjct: 217 TGLCCSGRRSDAARLMRDMVMRDI 240



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 5/202 (2%)

Query: 263 KGSTISSPTAKTY---AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           KG+ +++P    +   A     L  N  ++E   L  +MI S  LP +  + ++L  +  
Sbjct: 24  KGNRVTAPFISRFWGRAFTTKRLSMN--LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAK 81

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           +   +        M   G   D+ TYN  +  LC       AL + G+M++ G  P V T
Sbjct: 82  SKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVT 141

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            + LI+ + +     GA +   +M++  C  DV  Y  +IDG      V  A  L   + 
Sbjct: 142 VSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRME 201

Query: 440 NKGLKLPYRKFDSYLMQLSVIG 461
             G++     ++S +  L   G
Sbjct: 202 RDGVRADTVTYNSLVTGLCCSG 223


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 43/385 (11%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
           ++  +L  L +  T + V  VL+R  F    A +FF    +  +YAH   +++  IDI  
Sbjct: 64  SLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAG 123

Query: 127 STKYKAKQFRLVCSMLDYMKR-----NNKVFVPVDVLLMILKQYTEKIKV-------KTQ 174
               + + ++ V +++  M+      ++K F  +    +   +    IKV          
Sbjct: 124 ----RMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCP 179

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            ++++ N +LD LCK   V+ A   + K ++ K K +  +YNI+                
Sbjct: 180 QDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIA--------------- 224

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
                   + +C  +   +A ++ + M  +G T   PT  TY I++    +  +++E + 
Sbjct: 225 --------NGWCLIKRTPKALEVLKEMVERGLT---PTITTYNILLKGYFRAGQLKEAWE 273

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
               M       DV TY  ++ G  + G+++ A K   EM  +G  P   TYN  ++VLC
Sbjct: 274 FFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLC 333

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
              + + A+ ++  M++ G  P++ TYN++I   F  G  D A E    M   GC  +V 
Sbjct: 334 KKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQ 393

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEV 438
           TY V I    D   VE+   + E++
Sbjct: 394 TYNVAIRYFCDAGDVEKGLSMFEKM 418



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE      H+  +F +  AID   + R       L   MR +      P++KT+AI+   
Sbjct: 102 LEYHPSYAHSASSFDH--AIDIAGRMRDYKTVWALVARMRARRI---GPSSKTFAIIAER 156

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            V   + +    +   M   GC  D+ ++  +L+ +C + +VE AY  L ++    +  D
Sbjct: 157 FVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKAD 216

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V+YN      C  K   +AL +   M+E G  P++ TYN+L+  YF  G+   A+E + 
Sbjct: 217 VVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFL 276

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +M +R    DV TY  M+ G     +++ A  +  E+V +G+ LP
Sbjct: 277 QMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGI-LP 320



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 123/288 (42%), Gaps = 33/288 (11%)

Query: 116 LAYNLMIDILSSTKYKAK--QFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173
           +AYN +  +L   K+KA    + ++ +    +KR  K        L +LK+  E+     
Sbjct: 200 MAYNNLFKVLRG-KFKADVVSYNIIANGWCLIKRTPKA-------LEVLKEMVER---GL 248

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P I   N+LL    + G +  A     ++K + V+ +  TY  +              +
Sbjct: 249 TPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARK 308

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+  G  P   TYN  I   CK   V  A  +FE M  KG     P   TY ++I 
Sbjct: 309 VFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYV---PNLTTYNVVIR 365

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L     M++    +  M   GC P+V TY   +   C AG VE+     E+MG +G  P
Sbjct: 366 GLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMG-QGSLP 424

Query: 341 DIVTYNCFLKVLCDNKNGDE---ALRLYGRMIEVGCWPSVQTYNMLIS 385
           ++ TYN  +  +   K  ++   A +L   M++ G  P   T+N +++
Sbjct: 425 NLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLN 472


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 16/270 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P I   N L++  CK G V  A + +    K   KPN  TYN L                
Sbjct: 302 PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLL 361

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  ++  G  PD  TYN  +D FCK   +  A ++F  M + G     P   T+  +I  
Sbjct: 362 LRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL---EPDGFTFTALIDG 418

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+E+   +LG M+  G   D  T+  +++G C  GK ++     E M        
Sbjct: 419 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 478

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+NCFL  L  +   +EA  + G+M++ G  PSV T+ +LI  +   GE   + +   
Sbjct: 479 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 538

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            M + GC+ +V TY ++I+GL +  +VEEA
Sbjct: 539 RMKQAGCSPNVYTYTIIINGLCNNGRVEEA 568



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 25/266 (9%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           +++ALCK G V  AE  C +V                      +++G   D     + + 
Sbjct: 134 VVNALCKNGFVQAAEMFCCKV----------------------LRLGFGLDTHVCTSLVL 171

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             C+   + EA  +FE M  + S    P + TY+I+I  L +  R+EE F L   M+  G
Sbjct: 172 ANCRRDDLGEAFRVFEKMSKEESC--RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKG 229

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C P   TY  +++  C  G  ++A K L+EM  K   P++ TY   +  LC     +EA 
Sbjct: 230 CQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 289

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            ++ +M++ G  P + T+N LI+ Y + G    AF+    M+K  C  ++ TY  +++GL
Sbjct: 290 GVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGL 349

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYR 448
              SK  +A  LL  VV+ GL LP R
Sbjct: 350 CRVSKSYKAFLLLRRVVDNGL-LPDR 374



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 127/298 (42%), Gaps = 16/298 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           +P     ++L+  LC+ G ++ A  + +  V+   +P+  TY +L             M+
Sbjct: 196 RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMK 255

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM      P+  TY   ID  C+   + EA  +F  M   G     P   T+  +I 
Sbjct: 256 MLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLC---PGIITFNALIN 312

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +   F LL  M    C P++ TY E++EG+C   K  +A+  L  + + G  P
Sbjct: 313 GYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLP 372

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTYN  +   C     + A  ++  M   G  P   T+  LI    +LG  + A    
Sbjct: 373 DRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGIL 432

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
             M K+G + D  T+  +IDG     K ++ CFL E +V          F+ +L  L 
Sbjct: 433 GSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 490



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 122/298 (40%), Gaps = 45/298 (15%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL----------- 217
           K   +P I   N L++ LC+      A  + +RV  N + P+  TYNIL           
Sbjct: 332 KGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLN 391

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------- 269
                   M   G  PD FT+   ID  CK   + +A  +   M  KG ++         
Sbjct: 392 MAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 451

Query: 270 -------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                     TA T+   + AL ++ ++ E  ++LG M+  G +
Sbjct: 452 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLV 511

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           P V T+  ++EG C AG+   + K LE M   G  P++ TY   +  LC+N   +EA  +
Sbjct: 512 PSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 571

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              M   G  P+  TY +L+  + + G  D AF+    M K GC  +   Y  ++ G 
Sbjct: 572 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 629



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 18/295 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL--- 217
           LKQ  E ++   QP      +L+ A C  G+ D A  +   +  K   PN +TY IL   
Sbjct: 221 LKQ--EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDR 278

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                          +M++ G  P   T+N  I+ +CK   V  A  L   M  KG+   
Sbjct: 279 LCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVME-KGNC-- 335

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P  +TY  ++  L +  +  + F LL  ++++G LPD  TY  +++G C  G++  A+ 
Sbjct: 336 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 395

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               M + G  PD  T+   +  LC     ++A  + G M++ G      T+  LI  + 
Sbjct: 396 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 455

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++G+       +  M +  C     T+   +D L    K+ EA  +L +++  GL
Sbjct: 456 KIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 510



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 123/301 (40%), Gaps = 45/301 (14%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNF 235
           ++N  N +L  + K GLV    T    ++   +        L ++ LE M Q G +P+ +
Sbjct: 494 KLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA---LSLKMLERMKQAGCSPNVY 550

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TY   I+  C    V EA  +   M + G    SP   TYA+++ A V+  R++  F ++
Sbjct: 551 TYTIIINGLCNNGRVEEAETILFSMSSFGV---SPNHFTYAVLVKAHVKAGRLDRAFQIV 607

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGK--------------------------------- 322
             M+ +GC P+   Y  +L G  L+                                   
Sbjct: 608 STMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVF 667

Query: 323 ----VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
               V+ A K  +E+   G P + + YN  +  LC      EA +L   M++ G +P  +
Sbjct: 668 RLMDVDHALKIRDEIKKCGVPTEDL-YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-K 725

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             + +I  Y +  + D   E    +          +YC +I GL +  +V+EA  L+ ++
Sbjct: 726 AISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 785

Query: 439 V 439
           V
Sbjct: 786 V 786



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 39/220 (17%)

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           M   G  +S P    Y+ +++ L + +     F +   M+N G +     Y+ V+  +C 
Sbjct: 84  MTELGFRLSYPC---YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCK 140

Query: 320 AGKVE-----------------------------------EAYKFLEEMGN-KGYPPDIV 343
            G V+                                   EA++  E+M   +   P+ V
Sbjct: 141 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSV 200

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +  LC+    +EA +L   M+E GC PS +TY +LI    ++G  D A +   EM
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             + C  +V TY ++ID L    K+EEA  +  +++  GL
Sbjct: 261 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 54/270 (20%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           LK      +    P +    ++++ LC  G V+ AETI   + +  V PN  TY +L   
Sbjct: 534 LKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 593

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFC------KARMVTEAADL------ 256
                      Q +  M++ G  P++  Y+  +  F        AR ++   DL      
Sbjct: 594 HVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLS 653

Query: 257 -------------FEFM--------RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
                        F  M        R +      PT   Y  ++V L +  R+ E   L 
Sbjct: 654 SEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLT 713

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M+  G  PD      ++E  C   K +   +F++ + +  + P   +Y   +  L + 
Sbjct: 714 QDMVKHGLFPD-KAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 772

Query: 356 KNGDEALRLYGRMI-------EVGCWPSVQ 378
               EA +L   ++       EV   PS++
Sbjct: 773 GRVQEAQKLVSDLVRHTGIEEEVEVTPSIE 802



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 317 MCLA----GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           MCLA    G V  A+     M N+G+    + Y   +  LC N     A     +++ +G
Sbjct: 101 MCLAKLNMGFV--AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLG 158

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEA 431
                     L+       +   AF  + +M K   C  +  TY ++I GL +  ++EEA
Sbjct: 159 FGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEA 218

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             L +E+V KG +   R +   +     IG      K+ D M
Sbjct: 219 FQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 143/327 (43%), Gaps = 51/327 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILG--- 218
           Y + +    QP +   N L++ L K G V  AE I  ++ +  + P+  TY   ILG   
Sbjct: 186 YKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCR 245

Query: 219 -------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                      + M++ G  P++ TY+T I+  C    V EA D+ E M  KG     PT
Sbjct: 246 NRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGI---EPT 302

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY + I AL   +  EE   L+  M   GC P+V TY  ++ G+   GK+E A     
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362

Query: 332 EMGNKGYPPDIVTYNCFL-----------------------------------KVLCDNK 356
           +M  +G  P+ VTYN  +                                   K LC   
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 422

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           + ++A+ L+ +M+++G  P+V TYN LI+ Y   G  + A      M + GC  D  TY 
Sbjct: 423 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYN 482

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ G     K+E A F  +E+V  GL
Sbjct: 483 ELVSGFSKWGKLESASFYFQEMVECGL 509



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 137/312 (43%), Gaps = 16/312 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------ 217
           Y + +K    P     N L++ LC  G    A  I   ++      N  TYN +      
Sbjct: 361 YHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL 420

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  M   E+M++MG  P   TYNT I+ +     V  AA L + M+  G     P 
Sbjct: 421 GGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGC---EPD 477

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  ++    +  ++E        M+  G  P+  +Y  +++G    GKV+ A   L+
Sbjct: 478 EWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLK 537

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M   G  P++ +YN  +  L       EA ++  +M+E G  P+V TY  LI      G
Sbjct: 538 RMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNG 597

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
               AF+ +H+M+KR C  ++ TY  +I GL    K +EA  LL+E+  KGL      F 
Sbjct: 598 RTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFT 657

Query: 452 SYLMQLSVIGDL 463
           S +    V+G +
Sbjct: 658 SLIDGFVVLGRI 669



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 181 NLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N ++  LC  G ++ A  +  K +K    P   TYN L              + L+ M +
Sbjct: 412 NEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKE 471

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD +TYN  +  F K   +  A+  F+ M   G    +P   +Y  +I    ++ +
Sbjct: 472 NGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL---NPNPVSYTALIDGHSKDGK 528

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++   SLL  M   GC P+V +Y  V+ G+    +  EA K  ++M  +G  P+++TY  
Sbjct: 529 VDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTT 588

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC N     A +++  M +  C P++ TY+ LI    + G+ D A     EM+++G
Sbjct: 589 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKG 648

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            A D  T+  +IDG     +++ A  LL  +V+ G K  YR +   L  L
Sbjct: 649 LAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 11/257 (4%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEA----ADLFEFMRTKGSTISSPTAKTYAIM 278
           ++M+  G  P   T+NT I+   K   V EA    + +F++         SP   TY  +
Sbjct: 187 KQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDL-------SPDVFTYTSL 239

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I+   +N  ++  F +   M+  GC P+  TY  ++ G+C  G+V+EA   LEEM  KG 
Sbjct: 240 ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGI 299

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P + TY   +  LC  ++ +EA+ L  RM + GC P+VQTY  LIS    LG+ + A  
Sbjct: 300 EPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIG 359

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +H+M K G   +  TY  +I+ L    +   A  +   +   G     + ++  +  L 
Sbjct: 360 LYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLC 419

Query: 459 VIGDLGAIHKLSDHMRK 475
           + GD+     L + M K
Sbjct: 420 LGGDIEKAMVLFEKMLK 436



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 159/380 (41%), Gaps = 26/380 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL---------MILKQYT 166
           L +N +I+ILS  K K ++  L+ S +     +  VF    ++L         +    + 
Sbjct: 199 LTFNTLINILSK-KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFD 257

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNI--------- 216
             +K    P     + L++ LC  G VD A + + + ++  ++P   TY +         
Sbjct: 258 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 317

Query: 217 ---LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ +  M + G  P+  TY   I    +   +  A  L+  M  +G     P   
Sbjct: 318 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV---PNTV 374

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R      +   M   G L +  TY E+++G+CL G +E+A    E+M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P +VTYN  +       N + A RL   M E GC P   TYN L+S + + G+ 
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A   + EM + G   +  +Y  +IDG     KV+ A  LL+ +   G       +++ 
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           +  LS         K+ D M
Sbjct: 555 INGLSKENRFSEAEKICDKM 574



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 35/231 (15%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +++ L + + +E   +L   M+NSG  P + T+  ++  +   GKV EA   L ++    
Sbjct: 169 LLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYD 228

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+ TY   +   C N+N D A  ++ RM++ GC P+  TY+ LI+     G  D A 
Sbjct: 229 LSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEAL 288

Query: 398 ETWHE-----------------------------------MDKRGCAQDVDTYCVMIDGL 422
           +   E                                   M KRGC  +V TY  +I GL
Sbjct: 289 DMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 348

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
               K+E A  L  +++ +GL      +++ + +L V G      K+   M
Sbjct: 349 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 147/334 (44%), Gaps = 39/334 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQ 220
           QP     N+++D LCK G       +   VK+ V  P+  TY  L              +
Sbjct: 353 QPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANR 412

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM Q G AP++FTYN  + +  KA  +TEA  L E M  KG ++ + +     I+I 
Sbjct: 413 ILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCN---IIID 469

Query: 281 ALVQNDRMEECFSLLGHMINSG-----------------------CLPDVSTYKEVLEGM 317
            L +N++++    ++  M N G                       CLPD  TY  ++  +
Sbjct: 470 GLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSAL 529

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C  G+ +EA K L EM  K   PD V Y+ F+   C +     A+++   M + GC PS 
Sbjct: 530 CKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPST 589

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
           +TYN+LI  + E    D   +   EM  +G   +V TY  +I    +   V +A  LL+E
Sbjct: 590 RTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDE 649

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           ++   +      F+  +       D  A  ++ D
Sbjct: 650 MLQNEIVPNITSFELLIKAFCKTSDFSAAQRVFD 683



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 22/289 (7%)

Query: 173 TQPEINAL--NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN-----------ILG 218
           + P +N +  N ++   C+ G VD AE + +R++++ + PN  T+N           +L 
Sbjct: 206 SMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLD 265

Query: 219 ----MQTLEEMIQMG-HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                  ++E  + G   PD  T++  +  FC+A MV EA  L + MR  G        +
Sbjct: 266 AYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFL---RRVE 322

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y   +  LV+N  + E   LL  M + G  P+  TY  +++G+C  GK  +  K  + +
Sbjct: 323 SYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFV 382

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    PD+VTY   L   C   N   A R+   M + GC P+  TYN+L+   ++ G  
Sbjct: 383 KSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRI 442

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             A      M ++G + D  +  ++IDGL   +K++ A  +++ + N+G
Sbjct: 443 TEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEG 491



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-------------------CKRVKN 205
           Y + +     P++   N+LL ALC  G ++ A  +                   C+  ++
Sbjct: 138 YKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMPERNEFSFGILARGYCRAGRS 197

Query: 206 ----KVKPNANTYNILGMQT-----------------LEEMIQMGHAPDNFTYNTAIDTF 244
                V  +  T N++   T                 +E M   G AP+  T+N  I   
Sbjct: 198 MDALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISAL 257

Query: 245 CKARMVTEAADLFEFMRTKGST-ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           CKA  V +A  +F  M+ K    +  P   T+ +M+    +   ++E   L+  M   G 
Sbjct: 258 CKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGF 317

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           L  V +Y   L G+   G V EA + L EM ++G  P+  TYN  +  LC      +  +
Sbjct: 318 LRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRK 377

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +   +      P V TY  L+  Y   G    A     EM ++GCA +  TY V++  L+
Sbjct: 378 VEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLW 437

Query: 424 DCSKVEEACFLLEEVVNKGLKL 445
              ++ EA  LLE +  KG  L
Sbjct: 438 KAGRITEAERLLERMSEKGYSL 459



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 133/303 (43%), Gaps = 39/303 (12%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-----------GMQTLEE 224
           + + N  L  L + G+V  A+ + + + ++ V+PN+ TYNI+            ++ +E+
Sbjct: 321 VESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVED 380

Query: 225 MIQMG-HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            ++ G   PD  TY + +  +C       A  + + M  KG    +P + TY +++ +L 
Sbjct: 381 FVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGC---APNSFTYNVLLQSLW 437

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP---- 339
           +  R+ E   LL  M   G   D ++   +++G+C   K++ A   ++ M N+G      
Sbjct: 438 KAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGR 497

Query: 340 -------------------PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
                              PD +TY+  +  LC     DEA +    MI     P    Y
Sbjct: 498 LGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLY 557

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           +  I  Y + G+   A +   +M+K+GC     TY ++I G  +    +E   L+ E+  
Sbjct: 558 DTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKG 617

Query: 441 KGL 443
           KG+
Sbjct: 618 KGI 620



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 116/286 (40%), Gaps = 42/286 (14%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK------------------- 263
           ++++  G APD FT N  +   C A  +  A  +F+ M  +                   
Sbjct: 139 KDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMPERNEFSFGILARGYCRAGRSM 198

Query: 264 ---GSTISSPTAKTYA--IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
              G   S PT        ++    +  +++E   L+  M + G  P+V T+   +  +C
Sbjct: 199 DALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALC 258

Query: 319 LAGKVEEAYKFLEEMGNK---GYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            AG+V +AY+   +M  K   G P PD VT++  L   C+    DEA  L   M   G  
Sbjct: 259 KAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFL 318

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL------FDCSKV 428
             V++YN  +S     G    A E   EM   G   +  TY +++DGL      FD  KV
Sbjct: 319 RRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKV 378

Query: 429 EEACFLLEEVVNKGLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                  E+ V  G+  P    + S L      G+  A +++ D M
Sbjct: 379 -------EDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEM 417



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 31/230 (13%)

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +++A +Q  R +   SL   ++ SG  PDV T   +L+ +C AG++E A +  + M 
Sbjct: 118 YNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMP 177

Query: 335 N----------KGY----------------PP-DIVTYNCFLKVLCDNKNGDEALRLYGR 367
                      +GY                P  ++V  N  +   C     DEA RL  R
Sbjct: 178 ERNEFSFGILARGYCRAGRSMDALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVER 237

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD---KRGCAQ-DVDTYCVMIDGLF 423
           M + G  P+V T+N  IS   + G    A+  +++M    +RG  + D  T+ VM+ G  
Sbjct: 238 MRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFC 297

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +   V+EA  L++ +   G       ++ +L  L   G +G   +L   M
Sbjct: 298 EAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREM 347



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 44/254 (17%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILG--- 218
           K+  E I     P+    +  +   CK G    A  + + ++ K  KP+  TYN+L    
Sbjct: 540 KKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGF 599

Query: 219 ---------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM--------- 260
                    ++ + EM   G  P+  TYN+ I +FC+  MV +A  L + M         
Sbjct: 600 REKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNI 659

Query: 261 --------------------RTKGSTISSPTAKT--YAIMIVALVQNDRMEECFSLLGHM 298
                               R   +++S+   K   Y++M   L    R  E  ++L  +
Sbjct: 660 TSFELLIKAFCKTSDFSAAQRVFDASLSTCGQKEVLYSLMCTQLSTYGRWLEAMNILETV 719

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
           +          YK+++EG+C   +V+  ++ L+ +  KGY  D   +   +  L +    
Sbjct: 720 LELRISIHRFPYKQIIEGLCKVDEVDHGHRLLKLLMVKGYSFDPAAFMPVIDALSERGKK 779

Query: 359 DEALRLYGRMIEVG 372
                L  +M+E+ 
Sbjct: 780 QHVDMLSQKMMEMA 793


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P +   N+L+DALCK G V  A+++    +K  VKP+  TY+ L                
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M  MG  PD  TY   I+ FCK +MV EA +LF+ M  K      P   TY+ +I  
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMV---PGIVTYSSLIDG 383

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++ R+   + L+  M + G   DV TY  +++G+C  G ++ A     +M ++   P+
Sbjct: 384 LCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I T+   L  LC      +A  ++  ++  G   +V TYN++I+ + + G  + A     
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLS 503

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M+  GC  +  T+  +I  LF   + ++A  LL +++ +GL
Sbjct: 504 KMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 141/319 (44%), Gaps = 16/319 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++  LN+L++  C  G + +  ++  ++ K    P+  T N L             + 
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++++  G   +  +Y T I+  CK   + +     + +R     ++ P  + Y+ +I 
Sbjct: 151 FHDKLLAQGFQLNQVSYATLINGVCK---IGDTRGAIKLLRKIDGRLTKPNVEMYSTIID 207

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +   + E + L   M   G   DV TY  ++ G C+ GK++EA   L EM  K   P
Sbjct: 208 ALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINP 267

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TYN  +  LC      EA  +   M++    P V TY+ L+  YF + E   A   +
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M   G   DV TY ++I+G      V+EA  L +E+  K +      + S +  L   
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 461 GDLGAIHKLSDHMRKFYNP 479
           G +  +  L D MR    P
Sbjct: 388 GRIPYVWDLIDEMRDRGQP 406



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQTLEEMIQMG 229
           L++ +CK G    A  + +++  ++ KPN   Y+ +                  EM   G
Sbjct: 170 LINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            + D  TY+T I  FC    + EA  L   M  K  TI+ P   TY I++ AL +  +++
Sbjct: 230 ISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLK--TIN-PNVYTYNILVDALCKEGKVK 286

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  S+L  M+ +   PDV TY  +++G  L  +V++A      M   G  PD+ TY   +
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 346

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C NK  DEAL L+  M +    P + TY+ LI    + G     ++   EM  RG  
Sbjct: 347 NGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQP 406

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            DV TY  +IDGL     ++ A  L  ++ ++ ++
Sbjct: 407 ADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 3/220 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M+ M H P    +N  +D+F K +  + A  L   +  KG     P   T  I+I  
Sbjct: 47  FNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKG---IQPDLITLNILINC 103

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                ++   FS+L  ++  G  PD  T   +++G+CL G+V++A  F +++  +G+  +
Sbjct: 104 FCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLN 163

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V+Y   +  +C   +   A++L  ++      P+V+ Y+ +I    +      A+  + 
Sbjct: 164 QVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFS 223

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           EM  +G + DV TY  +I G     K++EA  LL E+V K
Sbjct: 224 EMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLK 263



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 28/218 (12%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           VD  L + K+  +K  V   P I   + L+D LCK G + Y   +               
Sbjct: 355 VDEALNLFKEMHQKNMV---PGIVTYSSLIDGLCKSGRIPYVWDL--------------- 396

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  ++EM   G   D  TY++ ID  CK   +  A  LF  M+ +      P   T
Sbjct: 397 -------IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE---IRPNIFT 446

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           + I++  L +  R+++   +   ++  G   +V TY  ++ G C  G +EEA   L +M 
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKME 506

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           + G  P+  T+   +  L      D+A +L  +MI  G
Sbjct: 507 DNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 43/211 (20%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
           HQ N     + Y+ +ID L     K+ +   V  ++D M+   +   P DV+      Y+
Sbjct: 366 HQKNMVPGIVTYSSLIDGLC----KSGRIPYVWDLIDEMRDRGQ---PADVI-----TYS 413

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
                           L+D LCK G +D A  +  ++K++ ++PN  T+ IL        
Sbjct: 414 S---------------LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGG 458

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  ++++  G+  + +TYN  I+  CK  ++ EA  +   M   G     P A 
Sbjct: 459 RLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCI---PNAF 515

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           T+  +I+AL + D  ++   LL  MI  G L
Sbjct: 516 TFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V++A      M    + P I+ +N  L      K+   A+ L  R+   G  P + T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI+ +  +G+    F    ++ KRG   D  T   +I GL    +V++A    ++++ +G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 443 LKLPYRKFDSYLMQLSVIGDL-GAIHKL 469
            +L    + + +  +  IGD  GAI  L
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLL 187


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 143/307 (46%), Gaps = 24/307 (7%)

Query: 165  YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
            + E +++  +P I   N LLD+  K G  D    + K ++ +                  
Sbjct: 1107 HEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGS---------------- 1150

Query: 225  MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
                G  P++ TYN  I    +   + EAA+L E MR         ++ TY  +I  L+ 
Sbjct: 1151 ----GCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLS----KKASSFTYNPLITGLLA 1202

Query: 285  NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
               +++ + L   M N G +P V TY  ++ G+  +G VE A     EM   G  PD++T
Sbjct: 1203 RGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVIT 1262

Query: 345  YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
            YN  L   C   N  EAL L+G +   G  P+V TYN+LI  Y  LG+ + A     EM 
Sbjct: 1263 YNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMG 1322

Query: 405  KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            ++GC  +V TY +++ G  +   +  A    +E+++KGL+     +++ +    ++GD+ 
Sbjct: 1323 EQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIA 1382

Query: 465  AIHKLSD 471
               +L +
Sbjct: 1383 RAFELRE 1389



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 128/286 (44%), Gaps = 16/286 (5%)

Query: 175  PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTL----------- 222
            P +   N+L+D  C+ G ++ A  + + +  +   PN  TY IL   +L           
Sbjct: 1293 PTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREF 1352

Query: 223  -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +EM+  G  PD F YNT I        +  A +L E +  +G  ISS T  TY I+I  
Sbjct: 1353 FDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEG--ISSDTV-TYNILIHG 1409

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            L +   +++   L   M+++G  PD  TY  ++   C  G + EA K    M + G  P 
Sbjct: 1410 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPS 1469

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             VT+   +   C   N   A   + +M+E G  P+  TYN+LI     +G    A   +H
Sbjct: 1470 AVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFH 1529

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            EM +RG   +  TY ++IDG       E+A     E+   G+   Y
Sbjct: 1530 EMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDY 1575



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 130/301 (43%), Gaps = 16/301 (5%)

Query: 156  DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
            D + M+LK+  E       P     N+++  L + G ++ A  + + ++   K ++ TYN
Sbjct: 1136 DKVAMLLKE-METRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYN 1194

Query: 216  ILGMQTLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
             L    L             EM   G  P   TYN  I    ++ +V  A   F  MR  
Sbjct: 1195 PLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAM 1254

Query: 264  GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
            G     P   TY  ++    +   ++E   L G +  +G  P V TY  +++G C  G +
Sbjct: 1255 GLL---PDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 1311

Query: 324  EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            EEA    EEMG +G  P++ TY   +K   + ++   A   +  M+  G  P    YN  
Sbjct: 1312 EEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTR 1371

Query: 384  ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            I     LG+   AFE    +   G + D  TY ++I GL     +++A  L  ++V+ GL
Sbjct: 1372 ICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGL 1431

Query: 444  K 444
            +
Sbjct: 1432 Q 1432



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 330  LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              EM + G  PD+   N  L+VL D    D+   ++  M+E+G  PS+ TYN L+  + +
Sbjct: 1072 FREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLK 1131

Query: 390  LGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
             G  D       EM+ R  GC  +  TY V+I GL     +EEA  L+E     G++L  
Sbjct: 1132 EGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVE-----GMRLS- 1185

Query: 448  RKFDSYLMQLSVIGDL--GAIHKLSD 471
            +K  S+     + G L  G + K+ D
Sbjct: 1186 KKASSFTYNPLITGLLARGCVKKVYD 1211



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 245  CKAR---MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
            CKAR   + T +       R   S   +P  K    ++  L    R ++  ++   M+  
Sbjct: 1054 CKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLEL 1113

Query: 302  GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--PDIVTYNCFLKVLCDNKNGD 359
            G  P + TY  +L+     G+ ++    L+EM  +G    P+ VTYN  +  L    + +
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 1173

Query: 360  EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            EA  L   M  +    S  TYN LI+     G     ++   EM+  G    V TY  MI
Sbjct: 1174 EAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 1232

Query: 420  DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             GL     VE A     E+   GL      ++S L      G+L
Sbjct: 1233 HGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNL 1276


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 184/416 (44%), Gaps = 43/416 (10%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           LD  G+      ++ V  RF    K+    F+WA  +  +   P  ++ +++ L+  +  
Sbjct: 115 LDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKLFDAVVNALAKAREF 174

Query: 132 AKQFRLV---CSMLDYMKRNNKVFVPVDVLLMILKQYTE----KIKVKT----------- 173
              ++LV          +   +  V V    +++++Y      K+ ++T           
Sbjct: 175 DAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRTYEFATNNKSIV 234

Query: 174 --QPEINALNLLLDALCKCGLVDYAETIC---KRVKNKVKPNANTYNIL----------- 217
               E++ L +L+D+LCK G V  A       K +     P+   YNI+           
Sbjct: 235 DSGSEMSLLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRLRKLK 294

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
            G +   EM +    P   TY T ++ +C+ R V +A ++   M  +G    +P A  Y 
Sbjct: 295 QGERLWAEMKE-NMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGI---APNAIVYN 350

Query: 277 IMIVALVQNDRMEECFSLLG--HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
            +I AL +  R +E   +L   H++  G  P  STY  +++G C AG +  A K L+ M 
Sbjct: 351 PIIDALAEAGRFKEALGMLERFHVLEIG--PTDSTYNSLVKGFCKAGDLVGASKILKMMI 408

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           ++G+ P   TYN F +     +  +E + LY ++I+ G  P   TY++L+ M  E  + D
Sbjct: 409 SRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLD 468

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
            A +   EM   G   D+ T  +++  L    ++EEA    E+++ +G+   Y  F
Sbjct: 469 LAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTF 524



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 24/261 (9%)

Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNNKVFVPVDVLLMI 161
           +WA  ++N     + Y  +++     +   K   +V  M  + +  N  V+ P+   L  
Sbjct: 299 LWAEMKENMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAE 358

Query: 162 LKQYTEKIK-------VKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
             ++ E +        ++  P  +  N L+   CK G LV  ++ +   +     P+A T
Sbjct: 359 AGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATT 418

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN              GM    ++IQ G+ PD  TY+  +   C+   +  A  + + MR
Sbjct: 419 YNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMR 478

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G  +   T+    +++  L +  R+EE F     MI  G +P   T++ +   +   G
Sbjct: 479 HNGYDMDLATS---TMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQRMKADLKKQG 535

Query: 322 KVEEAYKFLEEMGNKGYPPDI 342
             E A K  + M +  Y P++
Sbjct: 536 MTEMAQKLCKLMSSVPYSPNL 556


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 174/384 (45%), Gaps = 32/384 (8%)

Query: 79  LTTDSVVGVLQRFQFE--EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
           LT D  V ++     +    +A  FF WA     + H    Y      L S K   K   
Sbjct: 74  LTHDQAVTIVASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLISNKNFEKAHE 133

Query: 137 LVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
           ++  M+       +V   ++   M+++ + + +     P    LN ++  + + GLV+YA
Sbjct: 134 VMQCMVKSFAEIGRVKEAIE---MVIEMHNQGL----APSTKTLNWVVKIVTEMGLVEYA 186

Query: 197 ETI----CKRVKNKVKPNANTYNILGM------------QTLEEMIQMGHAPDNFTYNTA 240
           E +    C R    V+PN  +Y ++ +            + L  MI+ G   DN T +  
Sbjct: 187 ENLFDEMCAR---GVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLI 243

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           +  FC+   VT A   F      G     P    +  MI  L +   +++ F +L  M+ 
Sbjct: 244 VREFCEKGFVTRALWYFRRFCEMG---LRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVG 300

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
            G  P+V T+  +++G+C  G  E+A++ FL+ + ++ + P+++TY   +   C ++  +
Sbjct: 301 RGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMN 360

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A  L  RM E G  P+  TY  LI  + + G  + A+E  + M++ G + +V TY  ++
Sbjct: 361 RAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIV 420

Query: 420 DGLFDCSKVEEACFLLEEVVNKGL 443
           DGL    +V+EA  +L+     GL
Sbjct: 421 DGLCKKGRVQEAYKVLKSGFRNGL 444



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 126/284 (44%), Gaps = 17/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNK-VKPNANTYNIL------------GM 219
           +P +     L+D LCK G  + A     K V+++  KPN  TY  +              
Sbjct: 304 KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAE 363

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             L  M + G AP+  TY T ID  CKA     A +L   M  +G    SP   TY  ++
Sbjct: 364 MLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGF---SPNVCTYNAIV 420

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +  R++E + +L     +G   D  TY  ++   C   ++++A     +M   G  
Sbjct: 421 DGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQ 480

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PDI +Y   + V C  K   E+   +   +  G  P+ +TY  +I  Y   G    A + 
Sbjct: 481 PDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKF 540

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +H M   GCA D  TY  +I GL   SK++EA  L + ++ KGL
Sbjct: 541 FHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGL 584



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 19/310 (6%)

Query: 180 LNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMI 226
           L+L++   C+ G V  A    +R  +  ++PN   +  +              + LEEM+
Sbjct: 240 LSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMV 299

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  P+ +T+   ID  CK     +A  L  F++   S    P   TY  MI    +++
Sbjct: 300 GRGWKPNVYTHTALIDGLCKKGWTEKAFRL--FLKLVRSENHKPNVLTYTAMISGYCRDE 357

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +M     LL  M   G  P+ +TY  +++G C AG  E AY+ +  M  +G+ P++ TYN
Sbjct: 358 KMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYN 417

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC      EA ++       G      TY +LIS + +  E   A   +++M K 
Sbjct: 418 AIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKS 477

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA- 465
           G   D+ +Y  +I       +++E+    EE V  GL    + + S +      G+L   
Sbjct: 478 GIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLA 537

Query: 466 ---IHKLSDH 472
               H++SDH
Sbjct: 538 LKFFHRMSDH 547



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 141/381 (37%), Gaps = 45/381 (11%)

Query: 87  VLQRFQFEEKIAFRFFMWAGHQDN-YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
           V Q F+  E++  R     G + N Y H  L     ID L    +  K FRL   ++   
Sbjct: 288 VKQAFEMLEEMVGR-----GWKPNVYTHTAL-----IDGLCKKGWTEKAFRLFLKLVRSE 337

Query: 146 KRNNKVFVPVDVLL------------MILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193
                V     ++             M+L +  E+      P  N    L+D  CK G  
Sbjct: 338 NHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQ---GLAPNTNTYTTLIDGHCKAGNF 394

Query: 194 DYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
           + A  +   +  +   PN  TYN +              + L+   + G   D  TY   
Sbjct: 395 ERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTIL 454

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I   CK   + +A  LF  M   G     P   +Y  +I    +  RM+E        + 
Sbjct: 455 ISEHCKQAEIKQALVLFNKMVKSGI---QPDIHSYTTLIAVFCREKRMKESEMFFEEAVR 511

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G +P   TY  ++ G C  G +  A KF   M + G   D +TY   +  LC     DE
Sbjct: 512 FGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDE 571

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  LY  MIE G  P   T   L   Y ++ +   A      ++K+   + V+T   ++ 
Sbjct: 572 ARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTVNT---LVR 628

Query: 421 GLFDCSKVEEACFLLEEVVNK 441
            L    KV  A     ++++K
Sbjct: 629 KLCSERKVGMAALFFHKLLDK 649



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           M+ +  +  R++E   ++  M N G  P   T   V++ +   G VE A    +EM  +G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+ V+Y   +   C   N  E+ R  G MIE G      T ++++  + E G    A 
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRAL 257

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +    + G   ++  +  MI+GL     V++A  +LEE+V +G K
Sbjct: 258 WYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWK 304


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 141/290 (48%), Gaps = 17/290 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL----------- 217
           K   +PE     +L+  LCK G ++ A  I K  ++   K +A  Y+ +           
Sbjct: 389 KKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMD 448

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +  + +M + G+  D    N  I+ F +A  + +A + F  M  KG    SPT  +Y 
Sbjct: 449 EAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGC---SPTIVSYN 505

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I  L + +R  E +S +  M+     PD+ T   +++G+C   K+E A    ++  +K
Sbjct: 506 TLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDK 565

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+ PDI  YN  +  LC     ++AL+LY  M    C P++ T N L+   +++ + + A
Sbjct: 566 GFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKA 625

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
            E W  + K G   D+ +Y + I GL  CS++ +A   L + +N+G+ LP
Sbjct: 626 SEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGI-LP 674



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P +   N++++ LCKCG  D +  I +R+ KN+ + +  TY+ L             ++ 
Sbjct: 255 PNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRV 314

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +E+++     D  T+N  ++ FC+A  + E+ +L+  M  +    +  T  +Y I+I  
Sbjct: 315 YKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKE----NCQTVVSYNILIKG 370

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +N ++EE  S+   +   GC P+ +TY  ++ G+C  G++ +A K  +E  +     D
Sbjct: 371 LFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLD 430

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              Y+  +  LC     DEA+ +  +M + G        N LI+ +    + + A   + 
Sbjct: 431 AYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFR 490

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM+ +GC+  + +Y  +I GL    +  EA   ++E++ K  K
Sbjct: 491 EMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWK 533



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 194 DYAETICKR-VKNKVKPNANTYNILGMQTLEEMIQM-GHAPDNFTYNTAIDTFCKARMVT 251
           D A T+ K   KNK+   A       + T + M  + G  P   +YNT ++ F +   + 
Sbjct: 81  DVALTVIKAYAKNKMSNKA-------LDTFQNMQDIFGCKPGVRSYNTLLNAFVE---LN 130

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           E      F R   S   SP  +TY I+I    +  ++E+  SLL  M +    PDV +Y 
Sbjct: 131 EWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYG 190

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-E 370
            ++ GM   G +  A K  +EM  +G   D+  YN  +     + + D+   ++ R++ +
Sbjct: 191 TLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKD 250

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
              +P+V TYN++I+   + G  D + E W  M K    +D+ TY  +I GL +   ++ 
Sbjct: 251 CSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDG 310

Query: 431 ACFLLEEVVNKGL 443
           A  + +E+V   L
Sbjct: 311 AVRVYKEIVESSL 323



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 18/269 (6%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKN---KVKPNANTYNILGM---QTLEEMIQM---- 228
           A + ++D LCK G +D A +I  ++     K+ P+     I G      LE+ I      
Sbjct: 433 AYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREM 492

Query: 229 ---GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
              G +P   +YNT I   CKA   +EA   + F++        P   T ++++  L Q 
Sbjct: 493 ECKGCSPTIVSYNTLIKGLCKAERFSEA---YSFVKEMLEKEWKPDMITCSLLMDGLCQE 549

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            ++E   +L    ++ G  PD++ Y  ++ G+C   K+E+A +    M      P++VT 
Sbjct: 550 KKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTR 609

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  ++ L   ++ ++A  ++  +++ G  P + +YN+ I           A E  ++   
Sbjct: 610 NTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALN 669

Query: 406 RGCAQDVDTYCVMIDGL--FDCSKVEEAC 432
           RG      T+ +++     F  S V  AC
Sbjct: 670 RGILPTAVTWNILVRAAVNFRTSSVLSAC 698



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 10/234 (4%)

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
           T I  + K +M  +A D F+ M+        P  ++Y  ++ A V+ +  +   S   + 
Sbjct: 85  TVIKAYAKNKMSNKALDTFQNMQDIFGC--KPGVRSYNTLLNAFVELNEWDRAESFSRYF 142

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
            +    P++ TY  +++  C   ++E+A   L+ M ++   PD+ +Y   +  +   K G
Sbjct: 143 ESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMV--KVG 200

Query: 359 D--EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA--QDVDT 414
           D   AL+++  M   G    V  YNMLI  +F+ G+ D   E W  + K  C+   +V T
Sbjct: 201 DLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVK-DCSVYPNVVT 259

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIH 467
           Y +MI+GL  C + +E+  + E +     +     + S +  L   G++ GA+ 
Sbjct: 260 YNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVR 313



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 4/178 (2%)

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLP 305
           +R+V+  + + + ++ +        A T   +I A  +N    +      +M +  GC P
Sbjct: 58  SRLVSHVSRIVDIVKAQKCPCKEDVALT---VIKAYAKNKMSNKALDTFQNMQDIFGCKP 114

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
            V +Y  +L       + + A  F     +    P++ TYN  +K+ C  +  ++A+ L 
Sbjct: 115 GVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLL 174

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
             M      P V +Y  LI+   ++G+  GA + + EM  RG   DV  Y ++IDG F
Sbjct: 175 DWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFF 232



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 349 LKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           +K    NK  ++AL  +  M ++ GC P V++YN L++ + EL E D A       +   
Sbjct: 87  IKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMD 146

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
            + ++ TY ++I       ++E+A  LL+ + ++ LK     + + +  +  +GDL    
Sbjct: 147 VSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGAL 206

Query: 468 KLSDHM 473
           K+ D M
Sbjct: 207 KVFDEM 212



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 17/150 (11%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNIL- 217
           M L  + + +    +P+I   N+L+  LC  C L D  +      ++   PN  T N L 
Sbjct: 554 MALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLM 613

Query: 218 -GMQTLEE----------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
            G+  + +          +++ G  PD  +YN  I   C    +++A +       +G  
Sbjct: 614 EGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGIL 673

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
              PTA T+ I++ A V N R     S  G
Sbjct: 674 ---PTAVTWNILVRAAV-NFRTSSVLSACG 699


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 123/259 (47%), Gaps = 8/259 (3%)

Query: 222 LEEMIQMGHAPDNFT-YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           L E ++    P N   YN  +   CK     EA DL   M T   T  +P   TY I+I 
Sbjct: 26  LLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMAT---TSCAPDIYTYNILIN 82

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG----KVEEAYKFLEEMGNK 336
           AL +  R+E+   L+  M    C  D+ TY  ++ G+C  G    +VE A++  EEM +K
Sbjct: 83  ALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDK 142

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G+ P  VTY   +  L   K  ++A ++   M E GC   + TYNMLI+ + + G  D A
Sbjct: 143 GHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKA 202

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
            + + EM  RGC  DV TY  ++DG     KVEEA  L  E+  +G+    R + S    
Sbjct: 203 MDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDA 262

Query: 457 LSVIGDLGAIHKLSDHMRK 475
               G +   H     MRK
Sbjct: 263 CLKAGRMQDAHAYLVEMRK 281



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 21/274 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL---------------- 217
           P+I   N+L++ALCK G ++ A+ + + ++ +  P +  TYN L                
Sbjct: 72  PDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVER 131

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
             +  EEM+  GH P + TY   ID   + +M  +A  + + M   G         TY +
Sbjct: 132 AFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFD---LVTYNM 188

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I    +   M++   L   M   GC+PDV TY  V++G C AGKVEEA K   EM  +G
Sbjct: 189 LINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARG 248

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+  TY              +A      M + G   ++ +Y  LIS   +LG+    F
Sbjct: 249 IFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAI-SYVALISTICKLGKGKLGF 307

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           +   EM ++G   ++ T+ V+ + L   S  ++A
Sbjct: 308 QLLREMLEKGFKPNLVTFNVVFEALSKESNTDDA 341



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 136/314 (43%), Gaps = 30/314 (9%)

Query: 188 CKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDN 234
           C+ G    A  + + +KN +V  NA  YNI+             +  L  M     APD 
Sbjct: 15  CEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDI 74

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQND----RME 289
           +TYN  I+  CK   + +A  L E M+ +      PT   TY  +I  L +      R+E
Sbjct: 75  YTYNILINALCKVGRLEDAQGLVEMMQAR----DCPTDIVTYNTLIHGLCRKGNGRFRVE 130

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
             F L   M++ G  P   TY  V++ +      E+A K L+ M   G   D+VTYN  +
Sbjct: 131 RAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLI 190

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
                    D+A+ L+  M   GC P V TYN ++  + + G+ + A + + EM  RG  
Sbjct: 191 NRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIF 250

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG----A 465
            +  TY  + D      ++++A   L E+  +GL        SY+  +S I  LG     
Sbjct: 251 PNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAI----SYVALISTICKLGKGKLG 306

Query: 466 IHKLSDHMRKFYNP 479
              L + + K + P
Sbjct: 307 FQLLREMLEKGFKP 320



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 18/229 (7%)

Query: 133 KQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL 192
           + FRL   M+D      K   P  V   ++     ++K+  Q +   L+L+ +  C   L
Sbjct: 131 RAFRLFEEMVD------KGHTPTSVTYTVVIDALLRVKMDEQAQ-KVLDLMHENGCAFDL 183

Query: 193 VDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
           V Y   I +  K  +   A       M    EM   G  PD  TYN+ +D FCKA  V E
Sbjct: 184 VTYNMLINRFAKAGMMDKA-------MDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEE 236

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A  LF  M+ +G     P  +TY  +  A ++  RM++  + L  M   G L D  +Y  
Sbjct: 237 ANKLFAEMKARGIF---PNGRTYTSITDACLKAGRMQDAHAYLVEMRKEG-LVDAISYVA 292

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           ++  +C  GK +  ++ L EM  KG+ P++VT+N   + L    N D+A
Sbjct: 293 LISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDA 341



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G C  G+  +A   LE M N   P +   YN  L  LC +    EAL L   M
Sbjct: 6   TYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSM 65

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK- 427
               C P + TYN+LI+   ++G  + A      M  R C  D+ TY  +I GL  C K 
Sbjct: 66  ATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGL--CRKG 123

Query: 428 -----VEEACFLLEEVVNKG 442
                VE A  L EE+V+KG
Sbjct: 124 NGRFRVERAFRLFEEMVDKG 143


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 149/338 (44%), Gaps = 31/338 (9%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSML---DYMKRNNKVFVPVDVLLMILKQY------TE 167
           +Y++++  LS +   A+   L  +M    D M  N    V +D    I + Y       E
Sbjct: 178 SYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYN----VLMDGYCKIGQTYEAQSLMKE 233

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--------- 217
            +K   +P +   +++++  CK   V+ A E   K +++   PNA T+N L         
Sbjct: 234 ILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGM 293

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM-VTEAADLFEFMRTKGSTISSPTAK 273
               ++   EM ++G      TYNT ID+ CK R  V  A DLF  +   G T   PT  
Sbjct: 294 LEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLT---PTIV 350

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I       R+ E       M    C P+V TY  +++G+C   +++EA K LE+M
Sbjct: 351 TYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDM 409

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY P +VTY   +   C       AL  + +M   GC P+   +N LI    +    
Sbjct: 410 KAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERA 469

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           +        M   GC  DV TY  +I GL   ++VE+A
Sbjct: 470 NDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDA 507



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 125/281 (44%), Gaps = 21/281 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------ 217
           + + I+    P     N L+   CK G++ D  +   +  K   K    TYN L      
Sbjct: 266 FMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCK 325

Query: 218 ---GMQTLEEMIQ----MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
              G+ T  ++       G  P   TYN+ I  FC AR ++EA   F+ M  K     +P
Sbjct: 326 KRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK----CAP 381

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY+I+I  L +  RM+E    L  M   G  P V TY  ++ G C  G+++ A  F 
Sbjct: 382 NVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFF 441

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           E+M   G  P+ V +N  +  LC  +  ++ LRL   M   GC P V TYN LIS    L
Sbjct: 442 EKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLIS---GL 498

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              +   +     D   CA +V T+  +I GL    KVEEA
Sbjct: 499 CSANRVEDAQRLFDGMACAPNVTTFNFLIRGLCAQKKVEEA 539



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 23/265 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P  + +N LL  LC+ G +  A  + + ++     P + ++NIL             +  
Sbjct: 65  PNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAH 124

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFC----KARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           L++M +   +    TYN  +   C     A  + +A + F+ M+  G     P  ++Y I
Sbjct: 125 LQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGV---EPDLESYHI 181

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++ AL  + RM E  +L   M    C PD+ TY  +++G C  G+  EA   ++E+   G
Sbjct: 182 LLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAG 238

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           Y P++ TY+  +   C     +EA  ++ +MIE  C P+  T+N LI+ + + G  + A 
Sbjct: 239 YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAI 298

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGL 422
           + + EM+K GC   + TY  +ID L
Sbjct: 299 KLFAEMEKIGCKATIVTYNTLIDSL 323



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 145/317 (45%), Gaps = 24/317 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
            P+I   N+L+D  CK G    A+++ K + K   +PN  TY+I+              +
Sbjct: 205 SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWE 264

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +MI+    P+  T+NT I  FCKA M+ +A  LF  M   G      T  TY  +I 
Sbjct: 265 VFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC---KATIVTYNTLID 321

Query: 281 ALVQN-DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
           +L +    +     L   +  +G  P + TY  +++G C A ++ EA ++ +EM  K   
Sbjct: 322 SLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CA 380

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++TY+  +  LC  +   EA +    M   G  P+V TY  LI+ + + GE   A   
Sbjct: 381 PNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLF 440

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           + +M   GCA +   +  +IDGL    +  +   LL  +  +G K     ++       +
Sbjct: 441 FEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYN------CL 494

Query: 460 IGDLGAIHKLSDHMRKF 476
           I  L + +++ D  R F
Sbjct: 495 ISGLCSANRVEDAQRLF 511



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 112/247 (45%), Gaps = 21/247 (8%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK--CGLVDYAETICKRVKNKVKP 209
           F    +L   +K + E  K+  +  I   N L+D+LCK   G+    +   K     + P
Sbjct: 288 FCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTP 347

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
              TYN L             MQ  +EM +   AP+  TY+  ID  CK R + EAA   
Sbjct: 348 TIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTL 406

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           E M+  G T   PT  TY  +I    +   ++        M  +GC P+   +  +++G+
Sbjct: 407 EDMKAHGYT---PTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGL 463

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C A +  +  + L  M  +G  PD++TYNC +  LC     ++A RL+  M    C P+V
Sbjct: 464 CKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNV 520

Query: 378 QTYNMLI 384
            T+N LI
Sbjct: 521 TTFNFLI 527



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 23/268 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N LL  L      D A  + K V      PNA+TYN+L             +    +M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  P+  T NT +   C+   ++ A  LF  M+  G  +  PT+ ++ I++       R
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQA-GPFL--PTSASHNILLRGFFMAGR 117

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIV 343
           + +  + L  M  S       TY  VL+G+C     A ++E+A +F +EM   G  PD+ 
Sbjct: 118 VRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLE 177

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           +Y+  L  L D+    EA  L+  M    C P + TYN+L+  Y ++G+   A     E+
Sbjct: 178 SYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 234

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            K G   +V TY ++I+      KVEEA
Sbjct: 235 LKAGYEPNVFTYSIIINCYCKLDKVEEA 262



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 144/314 (45%), Gaps = 25/314 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQ 220
           L+ + E +     P  +  N+L+   CK G +  A ++   +K+  + PNA+T N L + 
Sbjct: 17  LRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL-LL 75

Query: 221 TLEEMIQMGHA-------------PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
            L E+ QM  A             P + ++N  +  F  A  V +A    + MR   S++
Sbjct: 76  GLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSV 135

Query: 268 SSPTAKTYAIMIVALV----QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           ++    TY +++  L       +R+E+       M  SG  PD+ +Y  +L  +  +G++
Sbjct: 136 AT---GTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRM 192

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            EA+     M      PDI+TYN  +   C      EA  L   +++ G  P+V TY+++
Sbjct: 193 AEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 249

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I+ Y +L + + A+E + +M +  C  +  T+  +I G      +E+A  L  E+   G 
Sbjct: 250 INCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC 309

Query: 444 KLPYRKFDSYLMQL 457
           K     +++ +  L
Sbjct: 310 KATIVTYNTLIDSL 323



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 19/181 (10%)

Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL----- 217
           QY ++++ K  P +   ++L+D LCK   + + A+T+     +   P   TY  L     
Sbjct: 370 QYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFC 429

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   +   E+M   G AP+   +NT ID  CKA    +   L   M  +G     P
Sbjct: 430 KCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGC---KP 486

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              TY  +I  L   +R+E+   L   M    C P+V+T+  ++ G+C   KVEEA   L
Sbjct: 487 DVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNIL 543

Query: 331 E 331
           +
Sbjct: 544 D 544



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 4/200 (2%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  LV   + ++   L   ++     P+  TY  ++ G C  G++ +A     +M + G
Sbjct: 3   LLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+  T N  L  LC+      AL+L+  M      P+  ++N+L+  +F  G    A 
Sbjct: 63  LLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDAL 122

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLF----DCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
               +M K   +    TY +++ GL       +++E+A    +E+   G++     +   
Sbjct: 123 AHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHIL 182

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           L  LS  G +   H L   M
Sbjct: 183 LSALSDSGRMAEAHALFSAM 202


>gi|302785101|ref|XP_002974322.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
 gi|300157920|gb|EFJ24544.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
          Length = 522

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 36/332 (10%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKV--KPNANTYNIL------------GMQTLEEMI 226
           N L+D L K  LVD A  I  R  ++   +PN++TY  L              +  ++MI
Sbjct: 40  NSLIDGLVKAKLVDKALEIFSRDMDEALCQPNSHTYGALVSGLCKAGRIAEACELFQQMI 99

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           +  + P    Y T ID  CKAR   +A    E M        SP   TY+  I  L    
Sbjct: 100 ERRYTPHVVLYTTVIDGLCKARQFDKACSYLEKM-------ESPDIVTYSAFIDGLCNVG 152

Query: 287 RMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           +++  F LL  +   G   PDV  Y   ++G+C AG+V+ A +   +M + G PP+ VTY
Sbjct: 153 KVDYAFELLKQIQERGNARPDVVLYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTY 212

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGC------WPSVQTYNMLISMYFELGEPDGAFET 399
           N  ++ L  +K+ D A RL+  MI  GC      +P+V  Y  L+  +          E 
Sbjct: 213 NSLMRALAWHKSVDAARRLFTEMIRKGCEPDGATYPTVGMYATLVRAFLRDERAMEVDEL 272

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFDSYLMQ 456
             +M +RGC+ +   +  ++  LF   K++ +  + E+ + +G +   L Y +    L++
Sbjct: 273 VKDMVRRGCSINHHLWDTLVRMLFTSGKLKISLTVAEQALERGCEIHVLTYYEIIRGLVR 332

Query: 457 LSVIGD-LGAIHKLSDHMRKFYNPVIARRLAL 487
           L  +   L    K+ +H +    P ++R++A+
Sbjct: 333 LGKVSKALAQFQKMVEHGK----PTLSRQMAM 360



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 175/400 (43%), Gaps = 43/400 (10%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV----FV-------PVD 156
           +  Y    + Y  +ID L     KA+QF   CS L+ M+  + V    F+        VD
Sbjct: 100 ERRYTPHVVLYTTVIDGLC----KARQFDKACSYLEKMESPDIVTYSAFIDGLCNVGKVD 155

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN 215
               +LKQ  E+   +  P++    + +  LCK G VD A  +  ++++    PNA TYN
Sbjct: 156 YAFELLKQIQERGNAR--PDVVLYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYN 213

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTA------IDTFCKARMVTEAADLF 257
            L              +   EMI+ G  PD  TY T       +  F +     E  +L 
Sbjct: 214 SLMRALAWHKSVDAARRLFTEMIRKGCEPDGATYPTVGMYATLVRAFLRDERAMEVDELV 273

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
           + M  +G +I+     T   ++  L  + +++   ++    +  GC   V TY E++ G+
Sbjct: 274 KDMVRRGCSINHHLWDT---LVRMLFTSGKLKISLTVAEQALERGCEIHVLTYYEIIRGL 330

Query: 318 CLAGKVEEAYKFLEEMGNKGYPP----DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
              GKV +A    ++M   G P       + ++  +  LC     ++A  L+ +M++ G 
Sbjct: 331 VRLGKVSKALAQFQKMVEHGKPTLSRQMAMVHSSLVTKLCRRGRLEDAYELHQKMVKRGL 390

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P++++Y +LI  +F+ G+   + + + +M K    Q  DTY V+++G      ++EA  
Sbjct: 391 SPTIKSYKLLIKYHFKAGKAGVSRQLFEQMQKVDSPQTRDTYRVLLEGYCQAGMLDEAYG 450

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            LEE V +  K     +   + +L  +G     H +   M
Sbjct: 451 ALEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQRM 490



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 117/265 (44%), Gaps = 40/265 (15%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YN+ ID   KA++V +A ++F   R     +  P + TY  ++  L +  R+ E   L  
Sbjct: 39  YNSLIDGLVKAKLVDKALEIFS--RDMDEALCQPNSHTYGALVSGLCKAGRIAEACELFQ 96

Query: 297 HMI------------------------NSGC-------LPDVSTYKEVLEGMCLAGKVEE 325
            MI                        +  C        PD+ TY   ++G+C  GKV+ 
Sbjct: 97  QMIERRYTPHVVLYTTVIDGLCKARQFDKACSYLEKMESPDIVTYSAFIDGLCNVGKVDY 156

Query: 326 AYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           A++ L+++  +G   PD+V Y  F+K LC     D A+ L+ +M ++GC P+  TYN L+
Sbjct: 157 AFELLKQIQERGNARPDVVLYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLM 216

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQD------VDTYCVMIDGLFDCSKVEEACFLLEEV 438
                    D A   + EM ++GC  D      V  Y  ++       +  E   L++++
Sbjct: 217 RALAWHKSVDAARRLFTEMIRKGCEPDGATYPTVGMYATLVRAFLRDERAMEVDELVKDM 276

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDL 463
           V +G  + +  +D+ +  L   G L
Sbjct: 277 VRRGCSINHHLWDTLVRMLFTSGKL 301



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
           G  TL   + M H       ++ +   C+   + +A +L + M  +G    SPT K+Y +
Sbjct: 350 GKPTLSRQMAMVH-------SSLVTKLCRRGRLEDAYELHQKMVKRGL---SPTIKSYKL 399

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I    +  +      L   M          TY+ +LEG C AG ++EAY  LEE   + 
Sbjct: 400 LIKYHFKAGKAGVSRQLFEQMQKVDSPQTRDTYRVLLEGYCQAGMLDEAYGALEETVARQ 459

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P   +Y   ++ LC+    +EA  +  RM+ +G  P + +YN +   Y+E G    A 
Sbjct: 460 FKPTGASYLELIRKLCELGRTEEAHHILQRMVSLGHRPLLLSYNAVFQAYYESGRFANAR 519

Query: 398 ETW 400
           E +
Sbjct: 520 EVF 522



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V  +  ++ G+C AGK+ EA    + +        +V YN  +  L   K  D+AL ++ 
Sbjct: 1   VQCFGFLVTGLCKAGKISEATDHYQRLRKSLRFLSVVVYNSLIDGLVKAKLVDKALEIFS 60

Query: 367 R-MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           R M E  C P+  TY  L+S   + G    A E + +M +R     V  Y  +IDGL   
Sbjct: 61  RDMDEALCQPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKA 120

Query: 426 SKVEEACFLLEEV 438
            + ++AC  LE++
Sbjct: 121 RQFDKACSYLEKM 133


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 143/327 (43%), Gaps = 51/327 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN--ILG--- 218
           Y + +    QP +   N L++ L K G V  AE I  ++ +  + P+  TY   ILG   
Sbjct: 186 YKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCR 245

Query: 219 -------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                      + M++ G  P++ TY+T I+  C    V EA D+ E M  KG     PT
Sbjct: 246 NRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGI---EPT 302

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY + I AL   +  EE   L+  M   GC P+V TY  ++ G+   GK+E A     
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362

Query: 332 EMGNKGYPPDIVTYNCFL-----------------------------------KVLCDNK 356
           +M  +G  P+ VTYN  +                                   K LC   
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 422

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           + ++A+ L+ +M+++G  P+V TYN LI+ Y   G  + A      M + GC  D  TY 
Sbjct: 423 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYN 482

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ G     K+E A F  +E+V  GL
Sbjct: 483 ELVSGFSKWGKLESASFYFQEMVECGL 509



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 22/341 (6%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           SML+ + R+ +VF P D + +++ +       + + EI  +   L+ +   G   ++   
Sbjct: 113 SMLNRLVRD-RVFAPADHIRILMIK-----ACRNEEEIRRVADFLNEISGMGF-GFSLYS 165

Query: 200 CKRVKNKVKPNANTYNILGMQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEA----A 254
           C  +  ++   A    + G + L ++M+  G  P   T+NT I+   K   V EA    +
Sbjct: 166 CNTLLIQL---AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILS 222

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            +F++         SP   TY  +I+   +N  ++  F +   M+  GC P+  TY  ++
Sbjct: 223 QIFQYDL-------SPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLI 275

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G+C  G+V+EA   LEEM  KG  P + TY   +  LC  ++ +EA+ L  RM + GC 
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+VQTY  LIS    LG+ + A   +H+M K G   +  TY  +I+ L    +   A  +
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              +   G     + ++  +  L + GD+     L + M K
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 436



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 159/380 (41%), Gaps = 26/380 (6%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL---------MILKQYT 166
           L +N +I+ILS  K K ++  L+ S +     +  VF    ++L         +    + 
Sbjct: 199 LTFNTLINILSK-KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFD 257

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNI--------- 216
             +K    P     + L++ LC  G VD A + + + ++  ++P   TY +         
Sbjct: 258 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 317

Query: 217 ---LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ +  M + G  P+  TY   I    +   +  A  L+  M  +G     P   
Sbjct: 318 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV---PNTV 374

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L    R      +   M   G L +  TY E+++G+CL G +E+A    E+M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  P +VTYN  +       N + A RL   M E GC P   TYN L+S + + G+ 
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A   + EM + G   +  +Y  +IDG     KV+ A  LL+ +   G       +++ 
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554

Query: 454 LMQLSVIGDLGAIHKLSDHM 473
           +  LS         K+ D M
Sbjct: 555 INGLSKENRFSEAEKICDKM 574



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 122/280 (43%), Gaps = 16/280 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------ 217
           Y + +K    P     N L++ LC  G    A  I   ++      N  TYN +      
Sbjct: 361 YHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL 420

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  M   E+M++MG  P   TYNT I+ +     V  AA L + M+  G     P 
Sbjct: 421 GGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGC---EPD 477

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  ++    +  ++E        M+  G  P+  +Y  +++G    GKV+ A   L+
Sbjct: 478 EWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLK 537

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M   G  P++ +YN  +  L       EA ++  +M+E G  P+V TY  LI      G
Sbjct: 538 RMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNG 597

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
               AF+ +H+M+KR C  ++ TY  +I GL    K +EA
Sbjct: 598 RTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 139/323 (43%), Gaps = 20/323 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN--ILGM-- 219
           + E ++    P   +   L+D   K G VD A ++ KR++     PN  +YN  I G+  
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 220 --------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +  ++M++ G  P+  TY T ID  C+      A  +F  M  +      P 
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL---PN 617

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY+ +I  L Q  + +E       M   GC P + TY  ++ G+C  G+  EA + ++
Sbjct: 618 LYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVK 673

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  +G+ PD   Y   L   C N   D AL+++  +   G    +  Y  LI    + G
Sbjct: 674 DMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAG 733

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + + A   +  M ++    D   + V++DGL    +++    LL  + +K      + + 
Sbjct: 734 QVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYV 793

Query: 452 SYLMQLSVIGDLGAIHKLSDHMR 474
               +LS IG       L+D ++
Sbjct: 794 ILGRELSRIGKSIESEPLADKLK 816


>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
          Length = 238

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 3/219 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M++ G  P++  YN  I+ FC+A  +++A  ++  M   G     PT  TY  +I  L +
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGC---CPTIITYNTLIDGLCK 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            ++ +E  SL   M+  G  PD+ TY  ++ G+C   K++ A     E+ + G   D++ 
Sbjct: 58  AEKYQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIV 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           +N  +  LC     ++A  +Y  M E  C P++ TYN L+  ++E+G  D A   W  + 
Sbjct: 118 HNILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAIL 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             G   D+ TY   I GL  C++  E   LL EV+  G+
Sbjct: 178 DNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGI 216



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 50/236 (21%)

Query: 203 VKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV 250
           +K+  KPN++ YN L             ++   EM   G  P   TYNT ID  CKA   
Sbjct: 2   MKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKY 61

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            EA+ L + M  +G     P  +TY  +I  L +  +++    +   ++++G   DV  +
Sbjct: 62  QEASSLTKEMLERGF---KPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVH 118

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNK---------------------------------- 336
             ++ G+C AGKV +A+    EM  K                                  
Sbjct: 119 NILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILD 178

Query: 337 -GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            G  PDIVTYN  +K LC      E + L   ++  G  PSV T+++L+      G
Sbjct: 179 NGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPSVITWSILVRAVIRYG 234



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%)

Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
           M++ GC P+   YN LI+ +    +   A + + EM   GC   + TY  +IDGL    K
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEK 60

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            +EA  L +E++ +G K   R + S +  L
Sbjct: 61  YQEASSLTKEMLERGFKPDIRTYGSLIRGL 90



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%)

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M   G  P+   YN  +   C      +A+++Y  M   GC P++ TYN LI    +  +
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEK 60

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
              A     EM +RG   D+ TY  +I GL    K++ A  +  E+++ G+++
Sbjct: 61  YQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQV 113


>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 376

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L  MI+ G  P+   YN  I+    A   ++  D    +R  G+T  SPT  TY+ +
Sbjct: 149 VSVLNGMIKSGCKPNAHVYNALINGLVGA---SKFEDAIRVLREMGTTHFSPTVVTYSTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L + +R  E + L+  M++ G  P V TY  +++G+CL  KVE+A++   ++ +KG+
Sbjct: 206 INGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ T+N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            W  + + G   D+ +Y + + GL  C+++  A   L + V K + L
Sbjct: 326 IWARIMRNGLQPDIISYNITLKGLCSCNRISGAILFLHDAVCKKIVL 372



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 17/282 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           + Y E ++ K  P+    N +L+   +   +     + + +  +   + +++NI+ M+ L
Sbjct: 11  RVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREGSRSVSSFNIM-MRGL 69

Query: 223 -------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                        E M + G+  D+ TY   +  FCK   + ++  + E    KG  +  
Sbjct: 70  FDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVLD- 128

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
             A  Y+ MI  L +  ++++  S+L  MI SGC P+   Y  ++ G+  A K E+A + 
Sbjct: 129 --AFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRV 186

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L EMG   + P +VTY+  +  LC  +   EA  L   M++ G  PSV TY++LI     
Sbjct: 187 LREMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCL 246

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             + + AF+ W+++  +G   DV  + +MI GL    K++ A
Sbjct: 247 DCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLA 288



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 4/224 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  +E+++   +PD   YN  ++ F + R + +   L+E M  +GS     +  ++ IM+
Sbjct: 11  RVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREGSR----SVSSFNIMM 66

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L  N +++E  S+   M  SG + D  TY  ++ G C  G + ++   LE    KG  
Sbjct: 67  RGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGV 126

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            D   Y+  +  LC     D+A+ +   MI+ GC P+   YN LI+      + + A   
Sbjct: 127 LDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRV 186

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             EM     +  V TY  +I+GL    +  EA  L++E+++KGL
Sbjct: 187 LREMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGL 230



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++ S   PD   Y  +L G     ++++ +K  E MG +G    + ++N  ++ L DN  
Sbjct: 16  IVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREG-SRSVSSFNIMMRGLFDNAK 74

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DE + ++  M E G      TY +L+  + + G  + +       +++G   D   Y  
Sbjct: 75  VDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVLDAFAYSA 134

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLK 444
           MI+GL   +K+++A  +L  ++  G K
Sbjct: 135 MINGLCKEAKLDKAVSVLNGMIKSGCK 161


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQ 220
            P++    +L+DAL K G V  A+++    +K  VKP+  TYN L               
Sbjct: 514 NPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQH 573

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M  MG  PD  TY   I+ FCK++MV EA +LF+ M  K      P   TY+ ++ 
Sbjct: 574 VFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMV---PDTVTYSSLVD 630

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R+   + L+  M + G   DV TY  +++G+C  G +++A     +M ++G  P
Sbjct: 631 GLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRP 690

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +  T+   L  LC      +A  ++  ++  G    V  YN++I  + + G  + A    
Sbjct: 691 NTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTML 750

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +M++ GC  +  T+ ++I+ LF   + ++A  LL +++ +GL
Sbjct: 751 SKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 16/319 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++  LN+L++  C  G + +  ++  ++ K    P+  T N L             + 
Sbjct: 339 QPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALH 398

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++++  G   +  +Y T I+  CK   + +     + +R     ++ P  + Y+ +I 
Sbjct: 399 FHDKLLAQGFQLNQVSYATLINGVCK---IGDTRGAIKLLRKIDGRLTKPNVEMYSTIID 455

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +   + E + L   M   G   DV TY  ++ G C+ GK++EA   L EM  K   P
Sbjct: 456 ALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINP 515

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+ TY   +  L       EA  +   M++    P V TYN L++ Y  + E   A   +
Sbjct: 516 DVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVF 575

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M   G   DV TY ++I+G      V+EA  L +E+  K +      + S +  L   
Sbjct: 576 NAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKS 635

Query: 461 GDLGAIHKLSDHMRKFYNP 479
           G +  +  L D MR    P
Sbjct: 636 GRISYVWDLIDEMRDRGQP 654



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQTLEEMIQMG 229
           L++ +CK G    A  + +++  ++ KPN   Y+ +                  EM   G
Sbjct: 418 LINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 477

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            + D  TY+T I  FC    + EA  L   M  K  TI+ P  +TY I++ AL +  +++
Sbjct: 478 ISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLK--TIN-PDVRTYTILVDALGKEGKVK 534

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  S+L  M+ +   PDV TY  ++ G  L  +V++A      M   G  PD+ TY   +
Sbjct: 535 EAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 594

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C +K  DEAL L+  M +    P   TY+ L+    + G     ++   EM  RG  
Sbjct: 595 NGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQP 654

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            DV TY  +IDGL     +++A  L  ++ ++G++
Sbjct: 655 ADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIR 689



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 109/260 (41%), Gaps = 32/260 (12%)

Query: 212 NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL--------------- 256
           N  + + +  L ++++ G+ PD  T NT I   C    V EA                  
Sbjct: 41  NVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVS 100

Query: 257 -----------------FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
                             +F+R     ++ P  + Y  +I AL +   + E + L   M 
Sbjct: 101 YATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMT 160

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
             G   +V TY  ++ G C+ GK++EA   L  M  K   P++ TYN  +  LC      
Sbjct: 161 VKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVK 220

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EA  +   M++     +V TY+ L+  YF + E   A   ++ M   G   DV +Y +MI
Sbjct: 221 EAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMI 280

Query: 420 DGLFDCSKVEEACFLLEEVV 439
           +G     +V++A  L +E++
Sbjct: 281 NGFCKIKRVDKALNLFKEMI 300



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 145/321 (45%), Gaps = 26/321 (8%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQTLEEMIQMG 229
           L++ +C+ G    A    +++  ++ KPN   YN +                  EM   G
Sbjct: 104 LINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG 163

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            + +  TY+T I  FC    + EA  L   M  K  TI+ P   TY I++ AL +  +++
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLK--TIN-PNVCTYNILVDALCKEGKVK 220

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  S+L  M+ +    +V TY  +++G  L  +V++A      M   G  PD+ +YN  +
Sbjct: 221 EAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMI 280

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  D+AL L+  MI +  +P +  +N ++  + ++     A    H ++ +G  
Sbjct: 281 NGFCKIKRVDKALNLFKEMI-LSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ 339

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHK 468
            D+ T  ++I+      ++     +L +++ +G        ++ +  L + G +  A+H 
Sbjct: 340 PDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALH- 398

Query: 469 LSDHMRKFYNPVIARRLALNQ 489
                  F++ ++A+   LNQ
Sbjct: 399 -------FHDKLLAQGFQLNQ 412



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 28/218 (12%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           VD  L + K+  +K  V   P+    + L+D LCK G + Y   +               
Sbjct: 603 VDEALNLFKEMHQKNMV---PDTVTYSSLVDGLCKSGRISYVWDL--------------- 644

Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  ++EM   G   D  TYN+ ID  CK   + +A  LF  M+ +G     P   T
Sbjct: 645 -------IDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQG---IRPNTFT 694

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           + I++  L +  R+++   +   ++  G   DV  Y  ++ G C  G +EEA   L +M 
Sbjct: 695 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKME 754

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
             G  P+ VT++  +  L      D+A +L  +MI  G
Sbjct: 755 ENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%)

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           +QN       S+L  ++  G  PD  T   +++G+CL G+V+EA  F +++  +G+  + 
Sbjct: 39  IQNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQ 98

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V+Y   +  +C   +   A++   ++      P+V+ YN +I    +      A+  + E
Sbjct: 99  VSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSE 158

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           M  +G + +V TY  +I G     K++EA  LL  +V K
Sbjct: 159 MTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLK 197



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L ++  +GYPPD VT N  +K LC      EAL  + +++  G   +  +Y  LI+    
Sbjct: 51  LTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCR 110

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           +G+   A +   ++D R    +V+ Y  +ID L     V EA  L  E+  KG+      
Sbjct: 111 IGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVT 170

Query: 450 FDSYLMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           + + +    ++G L  A+  L+  + K  NP
Sbjct: 171 YSTLIYGFCIVGKLKEALGLLNVMVLKTINP 201


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 161/346 (46%), Gaps = 21/346 (6%)

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ 164
           A + + + H+   ++LMI  L S    A QFRL  ++LD MK   K+ V  D+LL I + 
Sbjct: 69  AEYANGFKHDLNTFSLMISKLIS----ANQFRLAETLLDRMKEE-KIDVTEDILLSICRA 123

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGMQTLE 223
           Y  +I  K    I   + + D  CK     Y   +   V+ N++K     Y         
Sbjct: 124 YG-RIH-KPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFY--------R 173

Query: 224 EMIQMGHAPDNFTYNTAIDTFCK-ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +M +MG  P   + N  I  FCK +  + +A  LF  M   G     P + TY  +I  L
Sbjct: 174 DMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGC---EPDSYTYGTLINGL 230

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   + E   LL  M   GC P V TY  ++ G+C    V+EA + LE+M +K   P++
Sbjct: 231 CRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNV 290

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            TY+  +   C   +   A  +   MI+    P++ +Y+ L++     G+ + A E +  
Sbjct: 291 FTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDR 350

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           M  +G   D   Y  +++ L D S+ +EA   L+E+V  G+K P R
Sbjct: 351 MKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIK-PNR 395



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +     ++  LC+   VD A  + + +K+K ++PN  TY+ L                
Sbjct: 253 PSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDI 312

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE MIQ    P+  +Y+T ++  C    + EA ++F+ M+ +G     P A  Y  ++  
Sbjct: 313 LELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGF---KPDAGLYGKIVNC 369

Query: 282 LVQNDRMEECFSLLGHMINSGCLPD-------VSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           L    R +E  + L  M+  G  P+       V T+  V+ G+C       A++    + 
Sbjct: 370 LCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVL 429

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
            +G    + T+N  LK  C+ K+  +  R+   M+  GC P  + ++ +++ +
Sbjct: 430 TRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCF 482



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 1/206 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL-AGKVEEAYK 328
           PT K+Y  ++  LV+ ++++  F     M   G  P V++   +++  C  +G +++A  
Sbjct: 147 PTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMH 206

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
               M N G  PD  TY   +  LC  ++  EA  L   M   GC PSV TY  +I    
Sbjct: 207 LFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLC 266

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           +L   D A     +M  +    +V TY  ++DG         A  +LE ++ K L+    
Sbjct: 267 QLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMI 326

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMR 474
            + + L  L   G +    ++ D M+
Sbjct: 327 SYSTLLNGLCNEGKINEALEIFDRMK 352


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 28/330 (8%)

Query: 164 QYTEKIKVKTQPE-INALNLLLDALCKCGLVDYAETICKRVKNKVKP----NANTYNIL- 217
           +  EK++ +  P+ I  LN ++  LC+ G    A     R K  V P    NA TY+ L 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFF-REKRTVWPEGKGNAVTYSTLV 325

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       M+   E +  GH+PD   Y T I    +A  + +A  +   M+  G  
Sbjct: 326 GALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFK 385

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           + +   K Y I+I    +  R+ E + LL  M   G  PDV TY  +L G C AG     
Sbjct: 386 LDT---KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAV 442

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            + L +M + G  P ++T+   +   C     DEALR+   M E G  P+   YN LI  
Sbjct: 443 DELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDF 502

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             + G+ D A E + EM ++    +V T+  ++ GL D +  E+A  L++++  +     
Sbjct: 503 LCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPD 562

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           Y   D  +  L VIG+       +D +++F
Sbjct: 563 YVTVDVLMEWLPVIGE-------TDRLKRF 585



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 147/353 (41%), Gaps = 53/353 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNIL------------G 218
           +P++  LN ++D LCK G V  A    ++  + V    PN  TYN L             
Sbjct: 206 RPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMA 265

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT-----KGSTIS----- 268
            + +E+M   G   +  T NT +   C+A     A + F   RT     KG+ ++     
Sbjct: 266 YELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLV 325

Query: 269 ------------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                   SP A  Y  MI  L Q  R+E+  S+   M  +G  
Sbjct: 326 GALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFK 385

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL-- 362
            D   Y  ++ G C   ++ EAY+ L+EM   G  PD+ TYN  L   C  K GD A   
Sbjct: 386 LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC--KAGDFAAVD 443

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L G+MI+ GC PSV T+  L+  Y ++G+ D A      MD+ G   +   Y  +ID L
Sbjct: 444 ELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFL 503

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
                V+ A  L +E+  K +      F++ L  L          +L D MR+
Sbjct: 504 CKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMRE 556



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 13/250 (5%)

Query: 211 ANTYNILGMQTLEEMIQMGHA---PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
           A   ++ GM  +  ++Q G A   PD  TY   ++  CKA  V +A  + + M  +   I
Sbjct: 147 ARVRDVPGMARIYALMQ-GCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDI 205

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS--GCLPDVSTYKEVLEGMCLAGKVEE 325
             P   T   ++  L ++ R++E  + +   ++S  GC P+  TY  +++  C  G +  
Sbjct: 206 R-PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISM 264

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ----TYN 381
           AY+ +E+M N+G P +IVT N  +  LC       AL  +     V  WP  +    TY+
Sbjct: 265 AYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTV--WPEGKGNAVTYS 322

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+           A E +HE    G + D   Y  MI GL    ++E+AC +   +   
Sbjct: 323 TLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEA 382

Query: 442 GLKLPYRKFD 451
           G KL  + ++
Sbjct: 383 GFKLDTKAYN 392



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 145/358 (40%), Gaps = 51/358 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNIL------------G 218
           +P++    +L++ LCK G V  A  +   +  +   ++P+  T N +             
Sbjct: 169 RPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEA 228

Query: 219 MQTLEEMIQMGHA--PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------STIS 268
           +  +E+ +   H   P+  TYN  ID FC+   ++ A +L E M  +G        +TI 
Sbjct: 229 LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIV 288

Query: 269 S----------------------PTAK----TYAIMIVALVQNDRMEECFSLLGHMINSG 302
                                  P  K    TY+ ++ AL+  + +     L    ++ G
Sbjct: 289 GGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEG 348

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             PD   Y  ++ G+  AG++E+A      M   G+  D   YN  +   C  K   EA 
Sbjct: 349 HSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAY 408

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L   M EVG  P V TYN L+S   + G+     E   +M   GC   V T+  ++ G 
Sbjct: 409 ELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGY 468

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480
               K++EA  +L  +   G+      +++ +  L   GD+    +L D M++   P 
Sbjct: 469 CKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPA 526


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 172/394 (43%), Gaps = 40/394 (10%)

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRL 137
           PL+   +  +L+  +   K A   F  A  Q  Y H P  + L++  LS  K      R+
Sbjct: 7   PLSARQLFKLLKA-EKSPKSALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVTRI 65

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYT---------------EKIKVKTQPEINALNL 182
           V      + +  K     DV+L +LK Y                E+I    +P I + N 
Sbjct: 66  V-----ELIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDCFQKMEEI-FGCKPGIRSYNA 119

Query: 183 LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMG 229
           LL+A  +  L++ AE+     +   + PN  TYNIL                L+ M    
Sbjct: 120 LLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKD 179

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD ++Y T I+   K+  +  A ++F+ M  +G     P    Y IMI    +     
Sbjct: 180 LKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLV---PDVMCYNIMIDGFFKRGDYV 236

Query: 290 ECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           +   +   ++   C+ P+V TY  ++ G+C  G+ +E+ +  E M       D+ TY+  
Sbjct: 237 QGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSL 296

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LCD  N D A+ +Y  M++      V TYN L++ +   G+   +FE W  M K  C
Sbjct: 297 ICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENC 356

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +V +Y + I GLF+  KVEEA  + E +  +G
Sbjct: 357 -HNVVSYNIFIRGLFENRKVEEAISVWELLRRRG 389



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 172/398 (43%), Gaps = 46/398 (11%)

Query: 86  GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145
            +L  F    KI   F +W        H  ++YN+ I  L    ++ ++     S+ + +
Sbjct: 330 ALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGL----FENRKVEEAISVWELL 385

Query: 146 KRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN 205
           +R                         +  +     +L+  LCK G ++ A  I K  K+
Sbjct: 386 RRRG-----------------------SGADSTTYGVLIHGLCKNGHLNKALKILKEAKD 422

Query: 206 ---KVKPNANTYNILGMQT---LEEMIQMGHAPDNF-------TYNTAIDTFCKARMVTE 252
              K+   A +  + G+     ++E + + H  D +         N  I+ F +A  + E
Sbjct: 423 GGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEE 482

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A   F  M TKG    SPT  +Y  +I  L + +R  + +S +  M+     PD+ TY  
Sbjct: 483 AICFFREMETKGC---SPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSL 539

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +++G+C   K++ A     ++  KG  PD+  +N  +  LC     ++AL LY  M +  
Sbjct: 540 LMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSN 599

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C P++ T+N L+   ++  E + A   W  M K G   D+ +Y + + GL  C ++ +  
Sbjct: 600 CLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGI 659

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
            L ++ +  G+ LP      Y++  +V+  LG +  LS
Sbjct: 660 ALFDDALKNGI-LP-TSITWYILVRAVL-KLGPLDSLS 694



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 136/283 (48%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQT 221
           P +   N++++ LCK G  D +  + +R+K N+ + +  TY+ L             ++ 
Sbjct: 253 PNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEV 312

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM++     D  TYN  ++ FC+A  + E+ +L+  M  +    +     +Y I I  
Sbjct: 313 YKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKE----NCHNVVSYNIFIRG 368

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +N ++EE  S+   +   G   D +TY  ++ G+C  G + +A K L+E  + G   D
Sbjct: 369 LFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLD 428

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              Y+  +  L      DEAL +  +M + GC  S    N LI+ +    + + A   + 
Sbjct: 429 AFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFR 488

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM+ +GC+  V +Y  +I+GL    +  +A   ++E++ K  K
Sbjct: 489 EMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWK 531



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 4/239 (1%)

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
           T +  + K++M  EA D F+ M         P  ++Y  ++ A ++ + +E+  S L + 
Sbjct: 83  TVLKAYAKSKMPNEALDCFQKMEEIFGC--KPGIRSYNALLNAFIEANLLEKAESFLAYF 140

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
              G LP++ TY  +++      +  EA   L+ M +K   PD+ +Y   +  +  + + 
Sbjct: 141 ETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDL 200

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA-QDVDTYCV 417
             AL ++  M E G  P V  YN++I  +F+ G+     E W  + K  C   +V TY V
Sbjct: 201 VSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNV 260

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRK 475
           MI+GL    + +E+  + E +     ++    + S +  L  +G++ GA+    + +++
Sbjct: 261 MINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKR 319



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 115/281 (40%), Gaps = 44/281 (15%)

Query: 39  KVFDESSDSVSDV-AKLYEAIIDNSNAYDNMEKAL------DSLGVPLTTDS----VVGV 87
           K+  E+ D    + A  Y +I+D  +    +++AL      D  G  L+       + G 
Sbjct: 415 KILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGF 474

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR 147
           ++  + EE I F   M        +   ++YN +I+ L   +  +  +  V  ML+   +
Sbjct: 475 VRASKLEEAICFFREM---ETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWK 531

Query: 148 NNKVFVP-----------VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
            + +              +D+ L + +Q   K     +P++   N+L+  LC  G ++ A
Sbjct: 532 PDMITYSLLMDGLCQGKKIDMALNLWRQVLVK---GLEPDVTMHNILMHGLCSAGKIEDA 588

Query: 197 ETICKRVK-NKVKPNANTYNIL--GMQTLEE----------MIQMGHAPDNFTYNTAIDT 243
             +   +K +   PN  T+N L  G+    E          M + G  PD  +YN  +  
Sbjct: 589 LLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKG 648

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
            C    +++   LF+     G     PT+ T+ I++ A+++
Sbjct: 649 LCSCGRISDGIALFDDALKNGIL---PTSITWYILVRAVLK 686


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 181/410 (44%), Gaps = 33/410 (8%)

Query: 80  TTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRL 137
           T+  ++  L+   F +K  +A R F W   Q +Y  + +  N ++ I+ S   K  +   
Sbjct: 134 TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDY--QSMLDNSVVAIIISMLGKEGRVSS 191

Query: 138 VCSMLDYMKRNN---KVFVPVDVLLMILK--QYTEKIKV-------KTQPEINALNLLLD 185
             +M + ++ +     V+    ++       +Y E + V         +P +   N++L+
Sbjct: 192 AANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251

Query: 186 ALCKCGLV-DYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHA 231
              K G   +   ++ +++K + + P+A TYN L              Q  EEM   G +
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFS 311

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
            D  TYN  +D + K+    EA  +   M   G    SP+  TY  +I A  ++  ++E 
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGF---SPSIVTYNSLISAYARDGMLDEA 368

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             L   M   G  PDV TY  +L G   AGKVE A    EEM N G  P+I T+N F+K+
Sbjct: 369 MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
             +     E ++++  +   G  P + T+N L++++ + G        + EM + G   +
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            +T+  +I     C   E+A  +   +++ G+      +++ L  L+  G
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 127/272 (46%), Gaps = 14/272 (5%)

Query: 204 KNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           + +V   AN +N  G+Q      + G + D ++Y + I  F  +    EA ++F+ M   
Sbjct: 186 EGRVSSAANMFN--GLQ------EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237

Query: 264 GSTISSPTAKTYAIMIVALVQ-NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           G     PT  TY +++    +      +  SL+  M + G  PD  TY  ++   C  G 
Sbjct: 238 GC---KPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT-CCKRGS 293

Query: 323 V-EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           + +EA +  EEM   G+  D VTYN  L V   +    EA+++   M+  G  PS+ TYN
Sbjct: 294 LHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYN 353

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LIS Y   G  D A E  ++M ++G   DV TY  ++ G     KVE A  + EE+ N 
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA 413

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           G K     F++++      G    + K+ D +
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +   E+ + G +PD  T N+ +  + + +MV +A  + ++M+ +G T   P+  TY  ++
Sbjct: 615 RAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT---PSMATYNSLM 671

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               ++    +   +L  ++  G  PD+ +Y  V+   C   ++ +A +   EM N G  
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIV 731

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           PD++TYN F+     +   +EA+ +   MI+ GC P+  TYN ++  Y +L   D A
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 16/289 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPN-----------AN 212
           Y   +     P+++  N +L AL + G+ + +E +   +++ + KPN           AN
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571

Query: 213 TYNILGMQTLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
              I  M +L E +  G   P      T +    K  ++ EA   F  ++ +G    SP 
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGF---SPD 628

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T   M+    +   + +   +L +M   G  P ++TY  ++     +    ++ + L 
Sbjct: 629 ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILR 688

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+  KG  PDI++YN  +   C N    +A R++  M   G  P V TYN  I  Y    
Sbjct: 689 EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADS 748

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
             + A      M K GC  + +TY  ++DG    ++ +EA   +E++ N
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN 797



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 16/193 (8%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY 214
           D+L    + ++E  +    P+I  LN ++    +  +V  A  +   +K +   P+  TY
Sbjct: 608 DLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATY 667

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L              + L E++  G  PD  +YNT I  +C+   + +A+ +F  MR 
Sbjct: 668 NSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN 727

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P   TY   I +   +   EE   ++ +MI  GC P+ +TY  +++G C   +
Sbjct: 728 SGIV---PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNR 784

Query: 323 VEEAYKFLEEMGN 335
            +EA  F+E++ N
Sbjct: 785 KDEAKLFVEDLRN 797


>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1604

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 142/307 (46%), Gaps = 24/307 (7%)

Query: 165  YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
            + E +++  +P I   N LLD+  K G  D    + K ++ +                  
Sbjct: 1107 HEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGS---------------- 1150

Query: 225  MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
                G  P++ TYN  I    +   + EAA+L E MR      S     TY  +I  L+ 
Sbjct: 1151 ----GCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSF----TYNPLITGLLA 1202

Query: 285  NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
               +++ + L   M N G +P V TY  ++ G+  +G VE A     EM   G  PD++T
Sbjct: 1203 RGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVIT 1262

Query: 345  YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
            YN  L   C   N  EAL L+G +   G  P+V TYN+LI  Y  LG+ + A     EM 
Sbjct: 1263 YNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMG 1322

Query: 405  KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            ++GC  +V TY +++ G  +   +  A    +E+++KGL+     +++ +    ++GD+ 
Sbjct: 1323 EQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIA 1382

Query: 465  AIHKLSD 471
               +L +
Sbjct: 1383 RAFELRE 1389



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 122/288 (42%), Gaps = 16/288 (5%)

Query: 156  DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
            D + M+LK+  E       P     N+++  L + G ++ A  + + ++   K ++ TYN
Sbjct: 1136 DKVAMLLKE-METRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYN 1194

Query: 216  ILGMQTLE------------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
             L    L             EM   G  P   TYN  I    ++ +V  A   F  MR  
Sbjct: 1195 PLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAM 1254

Query: 264  GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
            G     P   TY  ++    +   ++E   L G +  +G  P V TY  +++G C  G +
Sbjct: 1255 GLL---PDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 1311

Query: 324  EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            EEA    EEMG +G  P++ TY   +K   + ++   A   +  M+  G  P    YN  
Sbjct: 1312 EEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTR 1371

Query: 384  ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            I     LG+   AFE    +   G + D  TY ++I GL     +++A
Sbjct: 1372 ICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDA 1419



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 120/303 (39%), Gaps = 67/303 (22%)

Query: 116  LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM----ILKQYTEKIKV 171
            + YN++I  L+      +   LV  M    K ++  + P+   L+    + K Y  ++++
Sbjct: 1157 VTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEM 1216

Query: 172  KTQ---PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228
            + +   P +   N ++  L + GLV+ A+                          EM  M
Sbjct: 1217 ENEGIMPTVVTYNAMIHGLLQSGLVEAAQV----------------------KFAEMRAM 1254

Query: 229  GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            G  PD  TYN+ ++ +CKA  + EA  LF  +R  G    +PT  TY I+I    +   +
Sbjct: 1255 GLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGL---APTVLTYNILIDGYCRLGDL 1311

Query: 289  EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD------- 341
            EE   L   M   GCLP+V TY  +++G      +  A +F +EM +KG  PD       
Sbjct: 1312 EEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTR 1371

Query: 342  ----------------------------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
                                         VTYN  +  LC   N  +A  L  +M+    
Sbjct: 1372 ICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVRGDR 1431

Query: 374  WPS 376
            W S
Sbjct: 1432 WSS 1434



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 330  LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
              EM + G  PD+   N  L+VL D    D+   ++  M+E+G  PS+ TYN L+  + +
Sbjct: 1072 FREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLK 1131

Query: 390  LGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
             G  D       EM+ R  GC  +  TY V+I GL     +EEA  L+E     G++L  
Sbjct: 1132 EGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVE-----GMRLS- 1185

Query: 448  RKFDSYLMQLSVIGDL--GAIHKLSD 471
            +K  S+     + G L  G + K+ D
Sbjct: 1186 KKASSFTYNPLITGLLARGCVKKVYD 1211



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 7/207 (3%)

Query: 245  CKAR---MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
            CKAR   + T +       R   S   +P  K    ++  L    R ++  ++   M+  
Sbjct: 1054 CKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLEL 1113

Query: 302  GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--PDIVTYNCFLKVLCDNKNGD 359
            G  P + TY  +L+     G+ ++    L+EM  +G    P+ VTYN  +  L    + +
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 1173

Query: 360  EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            EA  L   M  +    S  TYN LI+     G     ++   EM+  G    V TY  MI
Sbjct: 1174 EAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 1232

Query: 420  DGLFDCSKVEEACFLLEEVVNKGLKLP 446
             GL     VE A     E+   GL LP
Sbjct: 1233 HGLLQSGLVEAAQVKFAEMRAMGL-LP 1258


>gi|357506233|ref|XP_003623405.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498420|gb|AES79623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 737

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 18/280 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           PE      ++D+ CK G    A  I   + K +  P+  +YN +            G Q 
Sbjct: 253 PEQVVYGQMIDSFCKVGRYHGAARIVYLMRKRRFVPSDVSYNHIIHGLSKDGDCMRGYQL 312

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEE  + G +    TY   ++  C+   V +A ++ + M  K         + Y I + A
Sbjct: 313 LEEGAEFGFSLCEHTYKVLVEALCRVLDVDKAREVLKLMLYKEGV---DKTRIYNIYLRA 369

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG-NKGYPP 340
           L   +   E  ++L  M+ S C  DV T   V+ G C  G+ +EA K L +M   K   P
Sbjct: 370 LCHVNNPTELLNVLVFMLESHCQTDVITLNTVINGFCKMGRFDEALKVLNDMLLGKFCAP 429

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGR-MIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           D+VT+   +  L D +  DEAL L+ R M E G  P V TYN+LI   ++L  P+ AFE 
Sbjct: 430 DVVTFTTLISGLLDAEKVDEALDLFNRVMPENGLKPGVVTYNVLIRCLYKLKRPNDAFEV 489

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           ++ M   G   D  TY V+++GL +C ++EEA    + V+
Sbjct: 490 FNNMAGDGITPDSTTYTVIVEGLCECDQIEEAKSFWQSVI 529



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 34/266 (12%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
           ++VL+ +L+ +        Q ++  LN +++  CK G  D A                  
Sbjct: 380 LNVLVFMLESHC-------QTDVITLNTVINGFCKMGRFDEA------------------ 414

Query: 215 NILGMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
               ++ L +M+ +G   APD  T+ T I     A  V EA DLF   R        P  
Sbjct: 415 ----LKVLNDML-LGKFCAPDVVTFTTLISGLLDAEKVDEALDLFN--RVMPENGLKPGV 467

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY ++I  L +  R  + F +  +M   G  PD +TY  ++EG+C   ++EEA  F + 
Sbjct: 468 VTYNVLIRCLYKLKRPNDAFEVFNNMAGDGITPDSTTYTVIVEGLCECDQIEEAKSFWQS 527

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           +       D   Y   LK LC +   +EA      +++ G  P++ +YN+LI+    LG 
Sbjct: 528 VIWPSGIHDNFVYAAILKGLCSSGKFNEACHFLYELVDSGISPNIYSYNILINCACNLGL 587

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVM 418
               ++   EM+K G A D  T+ ++
Sbjct: 588 KREVYQIVREMNKNGVAPDCVTWRIL 613



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P   T +T + T C +    EA   F    + GS    P  +T  +++  L+++    + 
Sbjct: 36  PSQHTISTILHTLCNSNRFEEAHQRFSLFLSSGSI---PDHRTCNLLLAKLLRSKTPFQT 92

Query: 292 FSLLGHMIN--SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +SL+  +I   +G +P +  Y  +++  C   +  +A++   +M N+G+ P++V+Y   +
Sbjct: 93  WSLVKSLIQIKAGFVPSLVNYNRLMDHFCFIHRPFDAHRLFFDMKNRGHCPNVVSYTTLI 152

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              C      +A++++  M+E G  P+  TY++LI  + 
Sbjct: 153 NGYCSVGGIRDAMKVFDEMLESGLEPNSMTYSVLIRGFL 191



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 25/195 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL------------GMQ 220
           P++     L+  L     VD A  +  RV  +N +KP   TYN+L              +
Sbjct: 429 PDVVTFTTLISGLLDAEKVDEALDLFNRVMPENGLKPGVVTYNVLIRCLYKLKRPNDAFE 488

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK----TYA 276
               M   G  PD+ TY   ++  C+   + EA   ++       ++  P+       YA
Sbjct: 489 VFNNMAGDGITPDSTTYTVIVEGLCECDQIEEAKSFWQ-------SVIWPSGIHDNFVYA 541

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L  + +  E    L  +++SG  P++ +Y  ++   C  G   E Y+ + EM   
Sbjct: 542 AILKGLCSSGKFNEACHFLYELVDSGISPNIYSYNILINCACNLGLKREVYQIVREMNKN 601

Query: 337 GYPPDIVTYNCFLKV 351
           G  PD VT+    K+
Sbjct: 602 GVAPDCVTWRILHKL 616



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 19/248 (7%)

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL--------- 217
           +IK    P +   N L+D  C       A  +   +KN+   PN  +Y  L         
Sbjct: 101 QIKAGFVPSLVNYNRLMDHFCFIHRPFDAHRLFFDMKNRGHCPNVVSYTTLINGYCSVGG 160

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF--EFMRTKGSTISSPTA 272
               M+  +EM++ G  P++ TY+  I  F + R      +L    + R K     S   
Sbjct: 161 IRDAMKVFDEMLESGLEPNSMTYSVLIRGFLRGRDFESGRELMCKLWERMKMEDELSVNV 220

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             +A +I +L +     E F +   M     LP+   Y ++++  C  G+   A + +  
Sbjct: 221 AAFANLIDSLCKEGFFNEVFEIAELMPCGSSLPEQVVYGQMIDSFCKVGRYHGAARIVYL 280

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGD--EALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           M  + + P  V+YN  +  L  +K+GD     +L     E G      TY +L+     +
Sbjct: 281 MRKRRFVPSDVSYNHIIHGL--SKDGDCMRGYQLLEEGAEFGFSLCEHTYKVLVEALCRV 338

Query: 391 GEPDGAFE 398
            + D A E
Sbjct: 339 LDVDKARE 346



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 8/244 (3%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M   GH P+  +Y T I+ +C    + +A  +F+ M   G     P + TY+++I   +
Sbjct: 135 DMKNRGHCPNVVSYTTLINGYCSVGGIRDAMKVFDEMLESGL---EPNSMTYSVLIRGFL 191

Query: 284 QNDRMEECFSLLGHMINSGCLPD-----VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           +    E    L+  +     + D     V+ +  +++ +C  G   E ++  E M     
Sbjct: 192 RGRDFESGRELMCKLWERMKMEDELSVNVAAFANLIDSLCKEGFFNEVFEIAELMPCGSS 251

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+ V Y   +   C       A R+   M +    PS  +YN +I    + G+    ++
Sbjct: 252 LPEQVVYGQMIDSFCKVGRYHGAARIVYLMRKRRFVPSDVSYNHIIHGLSKDGDCMRGYQ 311

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              E  + G +    TY V+++ L     V++A  +L+ ++ K      R ++ YL  L 
Sbjct: 312 LLEEGAEFGFSLCEHTYKVLVEALCRVLDVDKAREVLKLMLYKEGVDKTRIYNIYLRALC 371

Query: 459 VIGD 462
            + +
Sbjct: 372 HVNN 375


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 130/293 (44%), Gaps = 16/293 (5%)

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL-VDYAETICKRVKNKVKPNANTYN 215
           V+ + L  Y   +     P     N+L+D LCK G  VD  +   + ++  + PN  T+ 
Sbjct: 189 VVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHT 248

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           IL                L  M   G  PD  TYN  +   CKA  V EA +  E +R  
Sbjct: 249 ILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRT 308

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGK 322
           G+ +     K Y+ +I  L    R EE F     ++      PD+  Y  ++ G   AG+
Sbjct: 309 GTFVLG--LKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGR 366

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           +++A+ F +EM  K + PD   YN  LK LCD+ + D A  L   M +        T+ +
Sbjct: 367 IDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTI 426

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +I    +    D A + +  M + GC   V TY V+IDGL+   ++EEA  L 
Sbjct: 427 MIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLF 479



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 120/261 (45%), Gaps = 23/261 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           + E  + +  P+    N LL ALC  G +D A ++   + +N V  + NT+ I+      
Sbjct: 374 FDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCK 433

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE----------FMR 261
                  MQ  + M+++G  P   TYN  ID   +A  + EA  LF           F+R
Sbjct: 434 KQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLR 493

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
                     +++   ++ ++ Q+ ++ + + LL  +++SG +PDV TY  +L G+C   
Sbjct: 494 LTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVR 553

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            ++ A +   E+  KG+  D +TY   +  L      ++A+ L+  ++ +G  PS+  YN
Sbjct: 554 NLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYN 613

Query: 382 MLISMYFELGEPDGAFETWHE 402
            ++     + +   A   W +
Sbjct: 614 SIMRSLCRMNKLSQAINFWFD 634



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 6/210 (2%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY-AIMIVALVQNDR 287
           G  P    +   I     A    EA D F   R +G     PT   Y A++ V +     
Sbjct: 132 GLQPPAAAFEALIFAHASAGRHHEAVDAFS--RMEGEFGCRPTTFVYNAVLRVLVASGGV 189

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +    +L   M+ +GCLP+ +TY  +++G+C  G   +A K  +EM  +G  P++ T+  
Sbjct: 190 VPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTI 249

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            L  +C+     EA  L   M + GC P   TYN  +S   + G  D A E    + + G
Sbjct: 250 LLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTG 309

Query: 408 C-AQDVDTYCVMIDGLFDCSKVEEA--CFL 434
                +  Y  +IDGLF   + EE   C++
Sbjct: 310 TFVLGLKGYSCLIDGLFLAGRYEEGFQCYM 339



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 17/271 (6%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM +    PD F YNT +   C +  +  A  L   M      + +    T+ IMI  
Sbjct: 374 FDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDT---NTHTIMIHG 430

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP- 340
           L +   ++E   +   M+  GC P V TY  +++G+  A ++EEA     +M     P  
Sbjct: 431 LCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSL 490

Query: 341 ------------DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
                       D  +    +  +C +    +A +L   +++ G  P V TYN L++   
Sbjct: 491 FLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLC 550

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++   DGA   + E+  +G + D  TY  +ID L    +  +A  L +++++ G      
Sbjct: 551 KVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLS 610

Query: 449 KFDSYLMQLSVIGDLG-AIHKLSDHMRKFYN 478
            ++S +  L  +  L  AI+   DH+ K YN
Sbjct: 611 IYNSIMRSLCRMNKLSQAINFWFDHLLKKYN 641



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 2/175 (1%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEE-AY 327
           P A  +  +I A     R  E       M    GC P    Y  VL  +  +G V   A 
Sbjct: 135 PPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLAL 194

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
                M   G  P+  TYN  +  LC      +AL+L+  M++ G  P+V+T+ +L+S  
Sbjct: 195 ALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSM 254

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              G+   A    + M+ +GC  D  TY   + GL    +V+EA   LE +   G
Sbjct: 255 CNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTG 309



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           + SP   + A++ + L+  D     +  +     +G  P  + ++ ++     AG+  EA
Sbjct: 98  LRSPLLHSRAVVPI-LLATDADAAMYDAIADAQAAGLQPPAAAFEALIFAHASAGRHHEA 156

Query: 327 YKFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDE-ALRLYGRMIEVGCWPSVQTYNMLI 384
                 M G  G  P    YN  L+VL  +      AL LY RM+  GC P+  TYN+L+
Sbjct: 157 VDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALYNRMVAAGCLPNRATYNVLM 216

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
               + G    A + + EM +RG   +V T+ +++  + +  +++EA  LL  + +KG  
Sbjct: 217 DGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCP 276

Query: 445 LPYRKFDSYLMQLSVIG 461
                ++++L  L   G
Sbjct: 277 PDEVTYNAFLSGLCKAG 293


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 28/330 (8%)

Query: 164 QYTEKIKVKTQPE-INALNLLLDALCKCGLVDYAETICKRVKNKVKP----NANTYNIL- 217
           +  EK++ +  P+ I  LN ++  LC+ G    A     R K  V P    NA TY+ L 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFF-REKRTVWPEGKGNAVTYSTLV 325

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                       M+   E +  GH+PD   Y T I    +A  + +A  +   M+  G  
Sbjct: 326 GALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFK 385

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           + +   K Y I+I    +  R+ E + LL  M   G  PDV TY  +L G C AG     
Sbjct: 386 LDT---KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAV 442

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            + L +M + G  P ++T+   +   C     DEALR+   M E G  P+   YN LI  
Sbjct: 443 DELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDF 502

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             + G+ D A E + EM ++    +V T+  ++ GL D +  E+A  L++++  +     
Sbjct: 503 LCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPD 562

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           Y   D  +  L VIG+       +D +++F
Sbjct: 563 YVTVDVLMEWLPVIGE-------TDRLKRF 585



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 147/353 (41%), Gaps = 53/353 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNIL------------G 218
           +P++  LN ++D LCK G V  A    ++  + V    PN  TYN L             
Sbjct: 206 RPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMA 265

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT-----KGSTIS----- 268
            + +E+M   G   +  T NT +   C+A     A + F   RT     KG+ ++     
Sbjct: 266 YELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLV 325

Query: 269 ------------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                   SP A  Y  MI  L Q  R+E+  S+   M  +G  
Sbjct: 326 GALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFK 385

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL-- 362
            D   Y  ++ G C   ++ EAY+ L+EM   G  PD+ TYN  L   C  K GD A   
Sbjct: 386 LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC--KAGDFAAVD 443

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L G+MI+ GC PSV T+  L+  Y ++G+ D A      MD+ G   +   Y  +ID L
Sbjct: 444 ELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFL 503

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
                V+ A  L +E+  K +      F++ L  L          +L D MR+
Sbjct: 504 CKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMRE 556



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 13/250 (5%)

Query: 211 ANTYNILGMQTLEEMIQMGHA---PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
           A   ++ GM  +  ++Q G A   PD  TY   ++  CKA  V +A  + + M  +   I
Sbjct: 147 ARVRDVPGMARIYALMQ-GCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDI 205

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS--GCLPDVSTYKEVLEGMCLAGKVEE 325
             P   T   ++  L ++ R++E  + +   ++S  GC P+  TY  +++  C  G +  
Sbjct: 206 R-PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISM 264

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ----TYN 381
           AY+ +E+M N+G P +IVT N  +  LC       AL  +     V  WP  +    TY+
Sbjct: 265 AYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTV--WPEGKGNAVTYS 322

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            L+           A E +HE    G + D   Y  MI GL    ++E+AC +   +   
Sbjct: 323 TLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEA 382

Query: 442 GLKLPYRKFD 451
           G KL  + ++
Sbjct: 383 GFKLDTKAYN 392



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 145/358 (40%), Gaps = 51/358 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNIL------------G 218
           +P++    +L++ LCK G V  A  +   +  +   ++P+  T N +             
Sbjct: 169 RPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEA 228

Query: 219 MQTLEEMIQMGHA--PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------STIS 268
           +  +E+ +   H   P+  TYN  ID FC+   ++ A +L E M  +G        +TI 
Sbjct: 229 LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIV 288

Query: 269 S----------------------PTAK----TYAIMIVALVQNDRMEECFSLLGHMINSG 302
                                  P  K    TY+ ++ AL+  + +     L    ++ G
Sbjct: 289 GGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEG 348

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             PD   Y  ++ G+  AG++E+A      M   G+  D   YN  +   C  K   EA 
Sbjct: 349 HSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAY 408

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            L   M EVG  P V TYN L+S   + G+     E   +M   GC   V T+  ++ G 
Sbjct: 409 ELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGY 468

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480
               K++EA  +L  +   G+      +++ +  L   GD+    +L D M++   P 
Sbjct: 469 CKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPA 526


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 141/332 (42%), Gaps = 23/332 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------ 217
           +TE IK+    E  A N LL  L + G  +   E + K V+  ++PN  T+ IL      
Sbjct: 293 FTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCK 352

Query: 218 ------GMQTLEEM--------IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
                  ++ LE+M        I +   PD   YNT ID  CK     E   L E MR++
Sbjct: 353 FRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQ 412

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
                +P   TY  +I    +   +E+   L   M   G  P+V T   ++ GMC  G+V
Sbjct: 413 KGC--APDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRV 470

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
             A  F  E   +G   D VTY   +   C+  N ++A+ L+  M++ GC P    Y  L
Sbjct: 471 SSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTL 530

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           IS + + G    A     E+ K G   D   Y  +I G    +K      +L+E+   GL
Sbjct: 531 ISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGL 590

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           K     +++ +   S  GDL    K+   M K
Sbjct: 591 KPDTITYNTLIAYASKNGDLKFAQKVMRKMIK 622



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 17/267 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL--------- 217
           I V  +P++   N L+D LCK G       + +R++++    P+  TYN L         
Sbjct: 375 ISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGE 434

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
              G +  +EM + G AP+  T NT +   C+   V+ A + F   + +G       A T
Sbjct: 435 IEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGM---KGDAVT 491

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I A    +  E+   L   M+ SGC PD   Y  ++ G   AG++ +A   L E+ 
Sbjct: 492 YTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELK 551

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
             G  PD V YN  +   C          +   M E G  P   TYN LI+   + G+  
Sbjct: 552 KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLK 611

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDG 421
            A +   +M K G    V TY  +I+ 
Sbjct: 612 FAQKVMRKMIKAGVVPTVATYGAVINA 638



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 130/319 (40%), Gaps = 17/319 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E  K    P +  +N L+  +C+ G V  A       + + +K +A TY  L      
Sbjct: 442 FDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCN 501

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  M+   EM++ G +PD   Y T I  F +A  + +A+ +   ++  G     P 
Sbjct: 502 VNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGI---RPD 558

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y  +I    + ++    F +L  M  +G  PD  TY  ++      G ++ A K + 
Sbjct: 559 TVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMR 618

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFEL 390
           +M   G  P + TY   +   C N NG+EA+ ++  M       P+   YN+LI+   + 
Sbjct: 619 KMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKN 678

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
            +   A     +M   G   +  TY  +  GL D   +E+    ++ ++       Y   
Sbjct: 679 NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITM 738

Query: 451 DSYLMQLSVIGDLGAIHKL 469
           +     LS +G++  + K 
Sbjct: 739 EILTEWLSAVGEIERLKKF 757



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 12/220 (5%)

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           +F     I   C+ R      DLF  M   G+ + S    +    +      +RM E   
Sbjct: 270 SFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNE--- 326

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM-GNK-------GYPPDIVTY 345
           L+  M+     P+V T+  ++  MC   +V++A + LE+M G K          PD+V Y
Sbjct: 327 LMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIY 386

Query: 346 NCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           N  +  LC      E L L  RM  + GC P   TYN LI  + + GE +   E + EM+
Sbjct: 387 NTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMN 446

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           K G A +V T   ++ G+    +V  A     E   +G+K
Sbjct: 447 KEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK 486



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 100/256 (39%), Gaps = 17/256 (6%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKP 209
            F  V+     ++ + E +K    P+      L+    + G + D +  + +  K  ++P
Sbjct: 498 AFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRP 557

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +   YN L              + L+EM + G  PD  TYNT I    K   +  A  + 
Sbjct: 558 DTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVM 617

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEG 316
             M   G     PT  TY  +I A   N    E   +   M   S   P+   Y  ++  
Sbjct: 618 RKMIKAGVV---PTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINS 674

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C   KV+ A   +E+M   G  P+  TYN   K L D K+ ++      RMIE  C P 
Sbjct: 675 LCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPD 734

Query: 377 VQTYNMLISMYFELGE 392
             T  +L      +GE
Sbjct: 735 YITMEILTEWLSAVGE 750



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 17/171 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------GMQTLE 223
           +P+    N L+    K G + +A+ + ++ +K  V P   TY  +         G + +E
Sbjct: 591 KPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAME 650

Query: 224 EMIQMGHA----PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               M  A    P+   YN  I++ CK   V  A  L E M+  G T   P   TY  + 
Sbjct: 651 IFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVT---PNTTTYNAIF 707

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
             L     +E+ F  +  MI   C PD  T + + E +   G++E   KF+
Sbjct: 708 KGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKFV 758


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 127/289 (43%), Gaps = 16/289 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P +    +L+D LCK   L D  E +    +    PNA  +N +                
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGF 67

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +E M  MG +P   TYN  ID FCK   +  A ++ + M  +G     P   TY   +  
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGH---EPNHVTYNTFLHG 124

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  ++++  +L   M       DV  Y  +++G+C AGK+ EAY  L+EM N G  P 
Sbjct: 125 LCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPK 184

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              YN  L  LC     +EA +L+ RM   G  P   T+ M++  Y      D A     
Sbjct: 185 PGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQ 244

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           +M   G A     Y  +ID L    +V EA  LL+E++++GL    R +
Sbjct: 245 QMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTY 293



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 114/257 (44%), Gaps = 16/257 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           P     N ++DALCK G    A    + +++  V P   TYN+L             ++ 
Sbjct: 43  PNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEI 102

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+EM   GH P++ TYNT +   CK   V +A  LF  M  K   +       Y  +I  
Sbjct: 103 LQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLD---VYGYTTLIDG 159

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L Q  ++ E +SLL  M NSGC+P    Y  +L  +C   ++ EA+K  + M   G  PD
Sbjct: 160 LCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPD 219

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +T+   +   C     D+AL L  +M   G  P    YN LI      G    A+    
Sbjct: 220 WLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQ 279

Query: 402 EMDKRGCAQDVDTYCVM 418
           EM  RG + +  TY +M
Sbjct: 280 EMISRGLSPNSRTYALM 296



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M + G  P   T+   +D  CKA  +T+A +L E M  +G     P A  +  ++ AL +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCF---PNALVFNGIMDALCK 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R  E +  +  M + G  P + TY  +++G C   K+  A + L+EM  +G+ P+ VT
Sbjct: 58  EGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN FL  LC     D+AL L+  M E      V  Y  LI    + G+   A+    EM+
Sbjct: 118 YNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEME 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             GC      Y  ++  L   S++ EA  L + +   G+ LP
Sbjct: 178 NSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGI-LP 218



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 96/204 (47%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT  T+ I++  L + +R+ + F L+  M   GC P+   +  +++ +C  G+  EAY F
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGF 67

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           +E M + G  P IVTYN  +   C  +    AL +   M   G  P+  TYN  +    +
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G+ D A   +  M ++    DV  Y  +IDGL    K+ EA  LL+E+ N G       
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           +++ L  L     +   HKL   M
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRM 211



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   GC+P V T+  +++G+C A ++ +A++ +E MG +G  P+ + +N  +  LC    
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             EA      M  +G  P++ TYN+LI  + +  +   A E   EM  RG   +  TY  
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            + GL    KV++A  L   +  K ++L    + + +  L   G L   + L D M
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEM 176



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 39/253 (15%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-----------FVPVDVLLMILKQ 164
           + YNL+ID     +   +   ++  M       N V           +  VD  L + + 
Sbjct: 81  VTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRA 140

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
            TEK   K + ++     L+D LC+ G +                 A  Y++L     +E
Sbjct: 141 MTEK---KIRLDVYGYTTLIDGLCQAGKL-----------------AEAYSLL-----DE 175

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M   G  P    YN  +   CK   + EA  LF+  R  GS I  P   T+ +M+    +
Sbjct: 176 MENSGCVPKPGCYNAILSWLCKGSRINEAHKLFK--RMTGSGIL-PDWLTFGMMVFGYCR 232

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+++   LL  M ++G  P    Y  +++ +  AG+V EAY+ L+EM ++G  P+  T
Sbjct: 233 GHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRT 292

Query: 345 YNCFLKVLCDNKN 357
           Y    K   D+ N
Sbjct: 293 YALMRKQQTDDSN 305


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 193/431 (44%), Gaps = 45/431 (10%)

Query: 41  FDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFR 100
           F++S+  V ++ K +       ++ + +E+ LD  G+ LT + V  V+ R + + K A+ 
Sbjct: 68  FNQSAVDVHNIIKHHRG-----SSPEEIERILDKCGIQLTEELVFEVVNRNRSDWKPAYI 122

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
                     Y    L YN ++D+L     K ++F     ++D M + +  FV      +
Sbjct: 123 LSRLIVKHSVYISSSLVYNEILDVLG----KMRRFEEFHQVVDEMSKRDG-FVDEKTYEV 177

Query: 161 ILKQYTEKIKVK-------------TQPEINALNLLLDALCKCGLVDYAETI-CKRVKNK 206
           +L +Y    KV               + ++ A + LL  LC+   V++AET+ C R + +
Sbjct: 178 LLNRYAAAHKVDEAVGVFERRREFGIEDDLVAFHGLLMWLCRYKHVEFAETLFCSR-RRE 236

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
              +  T NI+              +  +++I     PD  +Y T I+   K   + +A 
Sbjct: 237 FGCDIRTMNIILNGWCVLGNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKAM 296

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +L+   R    T  +P  K    +I AL    R+ E   +   M   G  P+V TY  +L
Sbjct: 297 ELY---RALWETGRNPDVKICNNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLL 353

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGY--PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           + +C   + E+ ++ +EEM +KG    P+ VT+   LK    +K+ D  L    RM +  
Sbjct: 354 KHLCKIRRTEKVWELVEEMEHKGGSCSPNDVTFGYLLKYSQRSKDVDAVLE---RMAKNK 410

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
           C  +   YN++  +Y +    +   E W EM++ G   D  TY + I GL    K+ EA 
Sbjct: 411 CEMTSDLYNLMFRLYVQWDNEEKVREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEAL 470

Query: 433 FLLEEVVNKGL 443
              +E+++KG+
Sbjct: 471 SYFQEMMSKGM 481



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 115/290 (39%), Gaps = 14/290 (4%)

Query: 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
           L KCG +   E +   V N+ + +     IL    ++  +   +   +  YN  +D   K
Sbjct: 94  LDKCG-IQLTEELVFEVVNRNRSDWKPAYILSRLIVKHSV---YISSSLVYNEILDVLGK 149

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
            R   E   + + M  +   +     KTY +++       +++E   +       G   D
Sbjct: 150 MRRFEEFHQVVDEMSKRDGFVDE---KTYEVLLNRYAAAHKVDEAVGVFERRREFGIEDD 206

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEM---GNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +  +  +L  +C    VE    F E +     + +  DI T N  L   C   N  EA R
Sbjct: 207 LVAFHGLLMWLCRYKHVE----FAETLFCSRRREFGCDIRTMNIILNGWCVLGNVHEAKR 262

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           ++  +I   C P V +Y  +I+   + G+   A E +  + + G   DV     +ID L 
Sbjct: 263 IWKDIIASKCKPDVVSYGTMINALTKKGKLGKAMELYRALWETGRNPDVKICNNVIDALC 322

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              ++ EA  + +E+  KG       ++S L  L  I     + +L + M
Sbjct: 323 FKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRTEKVWELVEEM 372


>gi|449497581|ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 681

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 170/375 (45%), Gaps = 39/375 (10%)

Query: 110 NYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR------NNKVFVPVDVLLMI 161
           NY  EP  L Y+++I+     +       L+C++ + MK       NN  F  +   L +
Sbjct: 225 NYV-EPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCL 283

Query: 162 LKQYTEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +  + E   +       ++ PE  A   ++D+LCK      A  I   ++ K + P   +
Sbjct: 284 VGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLS 343

Query: 214 YN--ILGM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN  I G+          Q L E ++ G++P   TY   ++  CK     +A ++ + M 
Sbjct: 344 YNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMI 403

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            K         + Y I + A+   +   E  + L  M+ + C PDV T   V++G C  G
Sbjct: 404 HKQGV---DRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVG 460

Query: 322 KVEEAYKFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALR-LYGRMIEVGCWPSVQT 379
            +EEA K L +M G K   PD VT+   +  L +     E+L  LY  M E G  P V T
Sbjct: 461 SIEEALKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVIT 520

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN  I   F+L + + A  T+  M + G   D  TY V+IDGL DC+++EE     +++V
Sbjct: 521 YNATIRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIV 580

Query: 440 NKGLKLPYRKFDSYL 454
                 P +  DS++
Sbjct: 581 -----WPSKIHDSFV 590



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 27/260 (10%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           +L    E ++   QP++  LN ++   CK G ++ A                      ++
Sbjct: 430 LLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEA----------------------LK 467

Query: 221 TLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTYAIM 278
            L +MI      PD+ T+ T I        + E+ D L++ M  KG     P   TY   
Sbjct: 468 VLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIV---PGVITYNAT 524

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  +  +  +    M+ +G   D +TY  V++G+C   ++EE  +F +++     
Sbjct: 525 IRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIVWPSK 584

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D   Y+  LK LC +   +EA      + + G  P++  YN++I+   +LG    A+ 
Sbjct: 585 IHDSFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYR 644

Query: 399 TWHEMDKRGCAQDVDTYCVM 418
              EM K G A D  T+ ++
Sbjct: 645 LVKEMRKNGLAPDAVTWRIL 664



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 33/264 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N L+D  C   L + A  +                      L +M   GH P+ 
Sbjct: 159 PSIVNYNRLIDQFCSFSLPNVAHRV----------------------LFDMKSRGHCPNV 196

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            +Y   ID +C+   V+ A  LF+ M   G+ +  P + TY+++I   +     E   +L
Sbjct: 197 VSYTALIDGYCRVCNVSAAEKLFDEM--PGNYV-EPNSLTYSVLINGFLYKRDFETGKAL 253

Query: 295 LGHMIN--SGCLP---DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           + ++     G L    + + +  +++ +CL G   E +   E+M      P+   Y   +
Sbjct: 254 ICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMI 313

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K    A R+   M + G  P + +YN +I    + G    A++   E  + G +
Sbjct: 314 DSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGVEFGYS 373

Query: 410 QDVDTYCVMIDGL---FDCSKVEE 430
               TY V+++GL    D  K +E
Sbjct: 374 PSEHTYKVLLEGLCKELDTQKAKE 397



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 313 VLEGMCLAGKVEEAY-KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           V+ G+C A +  EA+ +F+  + ++  P D  T N  +  L D ++    LRL   + + 
Sbjct: 95  VIHGLCDAHRFHEAHCRFMLSIASRCVP-DERTCNVLIARLLDYRSPYCTLRLLVCLFDA 153

Query: 372 G--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
                PS+  YN LI  +     P+ A     +M  RG   +V +Y  +IDG      V 
Sbjct: 154 KPEFVPSIVNYNRLIDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVS 213

Query: 430 EACFLLEEV 438
            A  L +E+
Sbjct: 214 AAEKLFDEM 222



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 10/182 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +Q L+ +   G+        + I   C A    EA     FM +  S    P  +T  +
Sbjct: 73  ALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAH--CRFMLSIASR-CVPDERTCNV 129

Query: 278 MIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I  L+          LL  + ++    +P +  Y  +++  C       A++ L +M +
Sbjct: 130 LIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVAHRVLFDMKS 189

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY-----FEL 390
           +G+ P++V+Y   +   C   N   A +L+  M      P+  TY++LI+ +     FE 
Sbjct: 190 RGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFET 249

Query: 391 GE 392
           G+
Sbjct: 250 GK 251


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 186/429 (43%), Gaps = 43/429 (10%)

Query: 45  SDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA-FRFFM 103
           S  V D  +L E + D+ +A   +E  L      LT   V  VL+     +  A F FF 
Sbjct: 60  SHLVRDTCRLLE-LRDSWSA--KLEAQLRHFLRALTPSQVRAVLRAQAQRDARAAFEFFR 116

Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV----------------CSMLDYMKR 147
           WA  Q  Y H P  ++ M+ +LS T+      R+V                  ML Y  R
Sbjct: 117 WADRQWKYRHAPEVFDEMLALLSRTRLHDPARRVVRLMIRRGIRRGTRQFAHLMLSY-SR 175

Query: 148 NNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-K 206
             K+   + VL ++ K           P+I   N+ ++ L   G VD A    +R++   
Sbjct: 176 AGKLRSAMRVLQLMQKD-------GCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVG 228

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           V P+  TYN L             ++ +  M+Q G  PD  +Y T +   CK + V E  
Sbjct: 229 VDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVW 288

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +L E MR        P   TY ++I  L ++   +E  + L          D   Y  ++
Sbjct: 289 NLLERMRNDAGIF--PDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIV 346

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
              CL G++ EA + + EM +KG  PD+VTY+  +   C     D+A ++   M + GC 
Sbjct: 347 HSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCK 406

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+  T+  L++   ++G+   A+E  ++ ++        TY V++ G     K+ E+C +
Sbjct: 407 PNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDV 466

Query: 435 LEEVVNKGL 443
           + +++ KG 
Sbjct: 467 VMQMLQKGF 475



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 114/264 (43%), Gaps = 25/264 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P+    N+L+  L K G  D A T  +  + K       + +                D 
Sbjct: 302 PDQITYNMLIHGLAKHGHADEALTFLRESEGK------RFRV----------------DQ 339

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
             Y+  + +FC    ++EA ++   M +KG     P   TY+ ++    +   +++   +
Sbjct: 340 VGYSAIVHSFCLNGRMSEAKEIIGEMISKG---CRPDVVTYSAVVDGFCRIGELDQARKM 396

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           + HM  +GC P+  T+  +L G+C  GK  EA++ L +   + + P  +TY+  +     
Sbjct: 397 MKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRR 456

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                E+  +  +M++ G +P+    N+LI    +  +P  A +   +   +GC  +V  
Sbjct: 457 EGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVN 516

Query: 415 YCVMIDGLFDCSKVEEACFLLEEV 438
           +  +I G      +E A  LL+++
Sbjct: 517 FTTVIHGFSRQGDLESALSLLDDM 540



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 12/220 (5%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           HAP+ F    A+    + R+   A  +   M            + +A ++++  +  ++ 
Sbjct: 126 HAPEVFDEMLAL--LSRTRLHDPARRVVRLMIR---RGIRRGTRQFAHLMLSYSRAGKLR 180

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               +L  M   GC PD+      +  + +AG+V++A +F E M   G  PD+VTYNC +
Sbjct: 181 SAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNCLI 240

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK---- 405
           K LC  +   EAL + G M++ GC P   +Y  ++S    L +     E W+ +++    
Sbjct: 241 KGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSF---LCKEKRVAEVWNLLERMRND 297

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            G   D  TY ++I GL      +EA   L E   K  ++
Sbjct: 298 AGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRV 337



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 138/337 (40%), Gaps = 33/337 (9%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL-------- 217
           E I    +P++   + ++D  C+ G +D A  + K + KN  KPN  T+  L        
Sbjct: 364 EMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVG 423

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L +  +    P   TY+  +  F +   + E+ D+   M  KG     PTA 
Sbjct: 424 KSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGFF---PTAV 480

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
              ++I AL +  +       +    + GC  +V  +  V+ G    G +E A   L++M
Sbjct: 481 EINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDM 540

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                 PD+VTY   +  L       EA  L  +M+  G  P+  TY  +I  Y E G  
Sbjct: 541 YLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLPTPVTYRTVIHRYCEKGAV 600

Query: 394 D-------------GAFETWHEMDKRGCA--QDVDTYCVMIDGLFDCSKVE-EAC-FLLE 436
           +             G    ++++ ++ CA  +  + Y ++   L   SK + + C  L++
Sbjct: 601 EDLLNLLDKMLTKQGFSSAYNQVIEKLCAFGKLSEAYNLLSKVLRSASKRDAQTCHILMD 660

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +N+GL L        + Q ++I DL    K+   +
Sbjct: 661 SFLNRGLPLQSYNVACRMFQRNLIPDLKLCQKVDSQL 697


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 146/339 (43%), Gaps = 51/339 (15%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------ 217
           V   P +   NL++  +CK GLVD A  + + +  +K +P+  TY  L            
Sbjct: 163 VNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDE 222

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +  L+EM   G  P   T+N  I+  CK   +   A L + M  KG    +P   TY  
Sbjct: 223 AVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGC---APNEVTYNT 279

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC-----------LA------ 320
           +I  L    ++E+  SLL  M++S C+P+V TY  ++ G+            LA      
Sbjct: 280 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERG 339

Query: 321 ------------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
                             GK +EA +  +EM  K    + + Y+  +  LC +   DEAL
Sbjct: 340 YHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEAL 399

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
            +   M    C P+  TY+ L+  +FE G    A E W +M K    Q+   Y V+I GL
Sbjct: 400 EVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGL 459

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
               KV+EA  +  +++ KG K     + S +  LS  G
Sbjct: 460 CKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAG 498



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 16/278 (5%)

Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P     N+L++ LCK G L   A+ +         PN  TYN L             +  
Sbjct: 237 PSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISL 296

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+     P+  TY T I+   K     + A +   M  +G  ++      Y+ +I  
Sbjct: 297 LDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNE---YVYSALISG 353

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  + +E   L   M    C  +   Y  V++G+C  GK +EA + L EM N    P+
Sbjct: 354 LFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPN 413

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+  +K   +  NG +A+ ++  M +     +   Y++LI    + G+   A   W 
Sbjct: 414 AYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWA 473

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           +M  +GC  DV  Y  MI+GL +   VE+A  L  E++
Sbjct: 474 QMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEML 511



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 2/188 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           ++N+ ++   +  +   A + +   +  KG  IS P   T+ ++I  + +   +++   +
Sbjct: 133 SFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNIS-PNVLTFNLVIKTMCKVGLVDDAVQM 191

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M  S C PDV TY  +++G+C A +++EA   L+EM   G  P  VT+N  +  LC 
Sbjct: 192 FRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCK 251

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
             +     +L   M   GC P+  TYN LI      G+ + A      M    C  +V T
Sbjct: 252 KGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVT 311

Query: 415 YCVMIDGL 422
           Y  +I+GL
Sbjct: 312 YGTIINGL 319



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 120/292 (41%), Gaps = 53/292 (18%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  LC  G ++ A ++  R V +K  PN  TY  +            G + L  M +
Sbjct: 278 NTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEE 337

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G+  + + Y+  I    K     EA  LF+ M  K   +++     Y+ +I  L ++ +
Sbjct: 338 RGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNT---IVYSAVIDGLCRDGK 394

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEG------------------------------- 316
            +E   +L  M N+ C P+  TY  +++G                               
Sbjct: 395 PDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSV 454

Query: 317 ----MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI--E 370
               +C  GKV+EA     +M  KG  PD+V Y   +  L +    ++AL+LY  M+  E
Sbjct: 455 LIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQE 514

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
               P V TYN+L++   +      A +  + M  RGC  D+ T  + +  L
Sbjct: 515 PDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTL 566



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 31/223 (13%)

Query: 176 EINAL--NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
           E+N +  + ++D LC+ G  D A E + +   N+ KPNA                     
Sbjct: 376 ELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNA--------------------- 414

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
             +TY++ +  F +A    +A ++++ M     T        Y+++I  L ++ +++E  
Sbjct: 415 --YTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFT---QNEVCYSVLIHGLCKDGKVKEAM 469

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM--GNKGYPPDIVTYNCFLK 350
            +   M+  GC PDV  Y  ++ G+  AG VE+A +   EM        PD+VTYN  L 
Sbjct: 470 MVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLN 529

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            LC   +   A+ L   M++ GC P + T  + +    E  +P
Sbjct: 530 ALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDP 572



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIE---VGCWPSVQTYNMLISMYFELGEPDGAFE 398
           + ++N  L V+        AL  Y  +I    V   P+V T+N++I    ++G  D A +
Sbjct: 131 VKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQ 190

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            + +M    C  DV TYC ++DGL    +++EA  LL+E+   G       F+  +  L 
Sbjct: 191 MFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLC 250

Query: 459 VIGDLGAIHKLSDHM 473
             GDL  + KL D+M
Sbjct: 251 KKGDLARVAKLVDNM 265



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEE-MGNKGY--PPDIVTYNCFLKVLCDNKNGD 359
           C   V ++  VL  +   G    A +F    +G KG    P+++T+N  +K +C     D
Sbjct: 127 CKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVD 186

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +A++++  M    C P V TY  L+    +    D A     EM   GC     T+ V+I
Sbjct: 187 DAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLI 246

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +GL     +     L++ +  KG       +++ +  L + G L     L D M
Sbjct: 247 NGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRM 300


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 16/296 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L+    K GLV  A  +   ++NK  KPN  +Y IL                
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM   G  P+   +N  I  FCK   + EA ++F  M  KG     P   T+  +I  
Sbjct: 447 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC---KPDVYTFNSLISG 503

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + D ++    LL  MI+ G + +  TY  ++      G+++EA K + EM  +G P D
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +TYN  +K LC     D+A  L+ +M+  G  PS  + N+LI+     G  + A E   
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQK 623

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           EM  RG   D+ T+  +I+GL    ++E+   +  ++  +G+      F++ +  L
Sbjct: 624 EMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWL 679



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 165/376 (43%), Gaps = 42/376 (11%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           +   F W G Q+ Y H    Y ++I  L +      +F+ +  +L  MK    VF    +
Sbjct: 94  SMELFSWTGSQNGYRHSFDVYQVLIGKLGAN----GEFKTIDRLLIQMKDEGIVFKE-SL 148

Query: 158 LLMILKQY--------TEKIKVKT------QPEINALNLLLDALCK--CGLVDYAETICK 201
            + I++ Y        T ++ ++       +P   + N++L+ L    C  V  A     
Sbjct: 149 FISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKV-AANVFYD 207

Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
            +  K+ P   T+ ++             +  L +M + G  P++  Y T I +  K   
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNR 267

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V EA  L E M   G     P A+T+  +I+ L + DR+ E   ++  M+  G  PD  T
Sbjct: 268 VNEALQLLEEMFLMGCV---PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDIT 324

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++ G+C  G+V+ A      +      P+IV +N  +     +   D+A  +   M+
Sbjct: 325 YGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMV 380

Query: 370 -EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
              G  P V TYN LI  Y++ G    A E  H+M  +GC  +V +Y +++DG     K+
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440

Query: 429 EEACFLLEEVVNKGLK 444
           +EA  +L E+   GLK
Sbjct: 441 DEAYNVLNEMSADGLK 456



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 145/318 (45%), Gaps = 24/318 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P + +  +L+D  CK G +D A  +   +  + +KPN   +N L             ++
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM + G  PD +T+N+ I   C+   +  A  L   M ++G   ++    TY  +I 
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT---VTYNTLIN 537

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A ++   ++E   L+  M+  G   D  TY  +++G+C AG+V++A    E+M   G+ P
Sbjct: 538 AFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
             ++ N  +  LC +   +EA+     M+  G  P + T+N LI+     G  +     +
Sbjct: 598 SNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 657

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            ++   G   D  T+  ++  L     V +AC LL+E +  G  +P  +  S L+Q    
Sbjct: 658 RKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGF-VPNHRTWSILLQ---- 712

Query: 461 GDLGAIHKLSDHMRKFYN 478
                I + +   R+FYN
Sbjct: 713 ---SIIPQETLDRRRFYN 727



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 3/225 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V+ + +LF +  ++     S     Y ++I  L  N   +    LL  M + G +   S 
Sbjct: 91  VSTSMELFSWTGSQNGYRHS--FDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESL 148

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGN-KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           +  ++     AG   +  + + EM N     P   +YN  L++L        A  ++  M
Sbjct: 149 FISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDM 208

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +     P++ T+ +++  +  + E D A     +M K GC  +   Y  +I  L  C++V
Sbjct: 209 LSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRV 268

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            EA  LLEE+   G       F+  ++ L     +    K+ + M
Sbjct: 269 NEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 313


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y   +    +P+    N+++D LCK G LV   E + + VK   +PN  TY IL      
Sbjct: 360 YKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCK 419

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + +  M   G + +   YN  I   CK   + +A  ++  M +KG     P 
Sbjct: 420 QGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGC---KPD 476

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L +ND+MEE   L   M+  G + +  TY  ++        +++A K + 
Sbjct: 477 IYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVG 536

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM  +G P D +TYN  +K LC     ++ L L  +M     +PS+ + N+LI+ +   G
Sbjct: 537 EMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTG 596

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + + A +   +M +RG   D+ TY  +I+GL    + +EA  L   +  KG+
Sbjct: 597 KVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGI 648



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 73/412 (17%)

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRL 137
           P+T   +  +L+    +   +   F  AG Q  Y H    Y L+ID L +      +F++
Sbjct: 58  PITPSQLCKLLE-LPLDVPTSMDLFEKAGLQRGYIHSFHVYYLLIDKLGN----VGEFKM 112

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197
           +  +L  MK    VF   + L +++ +Y  K  +  Q    A  LLLD     G+  +  
Sbjct: 113 IDKLLKQMKDEGCVFK--ESLFILIMRYYGKAGLPGQ----ATRLLLDMW---GVYCF-- 161

Query: 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
                     +P   +YN++                  +M+  G +P  +T+   +  FC
Sbjct: 162 ----------EPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFC 211

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
               V  A  L   M   G     P +  Y ++I AL +N+R+ E   LL  M   GC P
Sbjct: 212 MVNEVDSACSLLRDMTKHGCV---PNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEP 268

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR-- 363
           DV T+ +V+ G+C AG++ EA K  + M  + +  D +     +  LC     DEA    
Sbjct: 269 DVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAML 328

Query: 364 ------------------------------LYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
                                         LY  M+  G  P   T+N++I    + G  
Sbjct: 329 SKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYL 388

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             A E   EM K+G   +V TY ++IDG       EEA  ++  +  KGL L
Sbjct: 389 VSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSL 440



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 152/361 (42%), Gaps = 40/361 (11%)

Query: 87  VLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK 146
           V  RF+  + + ++  + AG    +  +   +N+MID L    Y           LD M 
Sbjct: 348 VSGRFEEAKDLLYKNMVIAG----FEPDAFTFNIMIDGLCKKGYLVSALEF----LDEMV 399

Query: 147 RNNKVFVPVDVLLMIL-------KQYTEKIKVKTQPEINALNL-------LLDALCKCGL 192
           +  K F P  +   IL         + E  KV        L+L       L+ ALCK G 
Sbjct: 400 K--KGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGK 457

Query: 193 VDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNT 239
           +  A  +   + +K  KP+  T+N L             +    +M+  G   +  TYNT
Sbjct: 458 IQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNT 517

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I  F +  ++ +A  L   MR +G  + + T   Y  +I AL +    E+C  L+  M 
Sbjct: 518 LIHAFLRLELIQQADKLVGEMRFRGCPLDNIT---YNGLIKALCKTGATEKCLGLIEQMF 574

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
                P +++   ++   C  GKV +A +FL +M  +G  PDIVTYN  +  LC      
Sbjct: 575 GEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQ 634

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EAL L+  +   G  P   TYN LIS Y   G  + A +   +    G   +  T+ ++I
Sbjct: 635 EALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILI 694

Query: 420 D 420
           +
Sbjct: 695 N 695



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 135/310 (43%), Gaps = 13/310 (4%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV------KNKVKPNANTYN 215
           +K   E   +  +P++   N ++  LCK G +  A  +  R+       + +      + 
Sbjct: 255 MKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHG 314

Query: 216 ILGMQTLEE---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADL-FEFMRTKGSTISSPT 271
           +  M  ++E   M+     P+   YNT I+ +  +    EA DL ++ M   G     P 
Sbjct: 315 LCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGF---EPD 371

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           A T+ IMI  L +   +      L  M+  G  P+V TY  +++G C  G  EEA K + 
Sbjct: 372 AFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVN 431

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  KG   + V YNC +  LC +    +AL++YG M   GC P + T+N LI    +  
Sbjct: 432 SMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKND 491

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           + + A   + +M   G   +  TY  +I        +++A  L+ E+  +G  L    ++
Sbjct: 492 KMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYN 551

Query: 452 SYLMQLSVIG 461
             +  L   G
Sbjct: 552 GLIKALCKTG 561



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNILGMQ 220
           L+ Y E      +P+I   N L+  LCK   ++ A  + +  +   V  N  TYN L   
Sbjct: 462 LQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHA 521

Query: 221 TLE-EMIQM-----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
            L  E+IQ            G   DN TYN  I   CK     +   L E M   G  I 
Sbjct: 522 FLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMF--GEEIF 579

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P+  +  I+I +  +  ++ +    L  MI  G  PD+ TY  ++ G+C  G+ +EA  
Sbjct: 580 -PSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALN 638

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
               +  KG  PD VTYN  +   C     ++A +L  + +  G  P+  T+++LI+ +
Sbjct: 639 LFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYF 697



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 18/207 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNAN-TYNIL------------GMQTLEEMIQ 227
           N L+ A  +  L+  A+ +   ++ +  P  N TYN L             +  +E+M  
Sbjct: 516 NTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFG 575

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P   + N  I++FC+   V +A      M  +G T   P   TY  +I  L +  R
Sbjct: 576 EEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLT---PDIVTYNSLINGLCKMGR 632

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E  +L   +   G  PD  TY  ++   C  G   +A + L +  + G+ P+ +T++ 
Sbjct: 633 FQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSI 692

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCW 374
            +     N +  E   +   M   G W
Sbjct: 693 LINYFVKNNSDSEQFTIL--MGNWGFW 717


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 13/315 (4%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYN--ILGMQTLEEMIQM 228
           + +P  +++N LL  L     VD AE   +  ++ +V P+  T+N  I G+  + ++ + 
Sbjct: 151 RHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKA 210

Query: 229 GH----------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           G           AP   TYN+ ID +CK         +   ++       SPTA T+ ++
Sbjct: 211 GDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVL 270

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I    +N        +   M   G    V TY  ++ G+C  GKVEE  K +EEM + G 
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P+ +T+ C LK  C      +A      M E    P V  Y +LI  Y  LG+ + A  
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMA 390

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
               M K+G + +V TY  +I G         A  LL+E+  KG++     ++  +  L 
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450

Query: 459 VIGDLGAIHKLSDHM 473
             G++    KL D M
Sbjct: 451 CKGEVRKAVKLLDEM 465



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 152/329 (46%), Gaps = 19/329 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
           K +   ++ +  P+I   N ++  LC+ G +  A  + K +K   + P+  TYN L    
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 218 ----GMQT-------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
               G          L+EM++ G +P   T+   I+ +CK      A  +FE M+ +G  
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIA 296

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
            S     TY  +I  L    ++EE   L+  M + G  P+  T+  VL+G C  G + +A
Sbjct: 297 AS---VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADA 353

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
             +++ M  +   PD+V Y   +         ++A+ +   M + G  P+V TYN LI+ 
Sbjct: 354 NDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITG 413

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           +   G+   A     EM ++G   DV TY V+I  L    +V +A  LL+E+   GL+  
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPN 473

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +  +++ +      G++ + +++   M K
Sbjct: 474 HLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
           M+LK   E ++    P      +L++  CK      A  + + +K + +  +  TYN L 
Sbjct: 250 MLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
                      G++ +EEM  +G +P+  T+   +  FCK  M+ +A D  + M  +   
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV- 365

Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
              P    Y I+I    +  +ME+  ++   M   G  P+V+TY  ++ G   +G    A
Sbjct: 366 --EPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
              L+EM  KG   D+VTYN  +  LC      +A++L   M EVG  P+  TYN +I  
Sbjct: 424 SGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQG 483

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + + G    A+E    M+K     +V TY V I       K++EA  LL E+++K L
Sbjct: 484 FCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCL 540



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 102/239 (42%), Gaps = 25/239 (10%)

Query: 183 LLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           +L   CK G++ D  + I    +  V+P+   Y IL             M   E M + G
Sbjct: 340 VLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKG 399

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +P+  TYN  I  F ++     A+ L + M+ KG  I +    TY ++I AL     + 
Sbjct: 400 ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG--IEADVV-TYNVLIGALCCKGEVR 456

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   LL  M   G  P+  TY  +++G C  G ++ AY+    M       ++VTYN F+
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           K  C     DEA  L   M++    P+  TY  +          +G  E  +  D RGC
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI---------KEGMMEKGYTPDIRGC 566


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 51/332 (15%)

Query: 174 QPEINALNLLLDALCKCG------------------------------------LVDYAE 197
           QP++   +LL+D  CK G                                    LVD  +
Sbjct: 222 QPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHD 281

Query: 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC 245
            +   +++ +    + +NIL             M    EM Q G +P+  TY T ID  C
Sbjct: 282 LLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILC 341

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           KA  V +A   F  M ++G    SP   T+  +I  L      ++   L   MIN G  P
Sbjct: 342 KAGRVEDAVSHFSQMVSEG---LSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHP 398

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +      +++ +C  G+V EA+ F +++ + G  PD+V+Y   +   C +   DE+++L 
Sbjct: 399 NAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLL 458

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
           GRM+ +G  P   TY+ L++ Y + G  D A   + EM  +    +  TY +++ GLF  
Sbjct: 459 GRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHA 518

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
            +V  A     ++V+ G++L    ++  L  L
Sbjct: 519 GRVVAAREFYMKIVDSGIQLGINTYNIVLGGL 550



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 142/320 (44%), Gaps = 44/320 (13%)

Query: 189 KCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFT 236
           K  LVD  + +   +++ +    + +NIL             M    EM Q G +P+  T
Sbjct: 273 KGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVT 332

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKG-----STISS---------------------- 269
           Y T ID  CKA  V +A   F  M ++G      T +S                      
Sbjct: 333 YTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMI 392

Query: 270 -----PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
                P A     ++ +L +  R+ E       +I+ G  PDV +Y  +++G CL GK++
Sbjct: 393 NRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMD 452

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           E+ K L  M + G  PD VTY+  L   C N   D+AL LY  M      P+  TYN+++
Sbjct: 453 ESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIIL 512

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              F  G    A E + ++   G    ++TY +++ GL + S V+EA  + + + +K  +
Sbjct: 513 HGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQ 572

Query: 445 LPYRKFDSYLMQLSVIGDLG 464
           L  R F+  ++ L  +G +G
Sbjct: 573 LEVRTFNIMIVGLLKVGRIG 592



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYN--ILGMQTLEE------- 224
           P +     ++D LCK G V D      + V   + P+  T+   I G+ T+ E       
Sbjct: 328 PNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKL 387

Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              MI  G  P+    NT +D+ CK   V EA D F+ +   G     P   +Y I+I  
Sbjct: 388 SFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGV---KPDVVSYTILIDG 444

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
              + +M+E   LLG M++ G  PD  TY  +L G C  G+V++A     EM +K   P+
Sbjct: 445 YCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPN 504

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            +TYN  L  L        A   Y ++++ G    + TYN+++    E    D A   + 
Sbjct: 505 AITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQ 564

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            +  +    +V T+ +MI GL    ++ +A  L   ++  GL
Sbjct: 565 GLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGL 606



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 129/317 (40%), Gaps = 45/317 (14%)

Query: 180 LNLLLDALCKCGLVDYA---ETICKRVKNKV--------KPNANTYNIL----------- 217
             +L+   C  GL+D+A   E+   R    +         PN  +YN++           
Sbjct: 97  FGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEVD 156

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                  EM+  G  P+  TYN+ ID  CKA+ + +A  + + M  KG            
Sbjct: 157 KAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKG------------ 204

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
                     ++EE   LL  M   G  PDV TY  +++  C  G+  EA    + M  +
Sbjct: 205 ----------QLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRR 254

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD  TY   L          +   L   MI+ G       +N+LI  Y +    D A
Sbjct: 255 GQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKA 314

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
              + EM ++G + +V TY  +ID L    +VE+A     ++V++GL      F S +  
Sbjct: 315 MTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHG 374

Query: 457 LSVIGDLGAIHKLSDHM 473
           L  IG+   + KLS  M
Sbjct: 375 LCTIGEWKKVEKLSFEM 391



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 16/288 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E I     P    LN ++D+LCK G V  A     ++ +  VKP+  +Y IL        
Sbjct: 390 EMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDG 449

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L  M+ +G  PDN TY+  ++ +CK   V +A  L+  M +K      P A 
Sbjct: 450 KMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDV---KPNAI 506

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY I++  L    R+         +++SG    ++TY  VL G+C    V+EA +  + +
Sbjct: 507 TYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGL 566

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +K +  ++ T+N  +  L       +A  L+  ++  G  P    Y ++I  + E G  
Sbjct: 567 RSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLL 626

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           + + E +  M+K GC  +  T   ++  L +   V  A   L ++  K
Sbjct: 627 EESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDEK 674



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 124/270 (45%), Gaps = 9/270 (3%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N ++D LCK   +D AE + +++ +K +          ++ L++M   G  PD 
Sbjct: 172 PNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEE------AVRLLKKMSGGGLQPDV 225

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY+  ID +CK    TEA ++F+ M  +G    +P A TY  ++        + +   L
Sbjct: 226 VTYSLLIDYYCKIGRCTEARNIFDSMVRRGQ---NPDAYTYRTLLHGYATKGALVDMHDL 282

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  MI  G   +   +  ++        +++A     EM  KG+ P++VTY   + +LC 
Sbjct: 283 LALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCK 342

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               ++A+  + +M+  G  P + T+  LI     +GE     +   EM  RG   +   
Sbjct: 343 AGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIF 402

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              ++D L    +V EA    +++++ G+K
Sbjct: 403 LNTIMDSLCKEGRVLEAHDFFDQIIHVGVK 432



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 26/225 (11%)

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMI-----VALVQNDRMEECF---SLLGHMINSG-- 302
           A  LF  M   G    +  A T+ I+I     V L+     EE     + +  M + G  
Sbjct: 75  AVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYN 134

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC--------- 353
           C P+V +Y  V+ G+   G+V++AY    EM  +G+PP+IVTYN  +  LC         
Sbjct: 135 CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE 194

Query: 354 -------DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
                  D    +EA+RL  +M   G  P V TY++LI  Y ++G    A   +  M +R
Sbjct: 195 AVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRR 254

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           G   D  TY  ++ G      + +   LL  ++  G+ L    F+
Sbjct: 255 GQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFN 299


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 131/318 (41%), Gaps = 52/318 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N LL A C+ G++  A T+  R+K + + P   TYN L                
Sbjct: 243 PDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNV 302

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA---------------------------- 253
           +E M   G  PD +TYN      C+A  V EA                            
Sbjct: 303 VEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACF 362

Query: 254 --------ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
                    +L E MR KG   S     T+ I++  L +  ++EE    L  M   G  P
Sbjct: 363 KYQRSSDALNLLEEMRDKGVKSS---LVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAP 419

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           DV TY  +++  C A  V +A+  ++EM   G   D  T N  L  LC  K  +EA  L 
Sbjct: 420 DVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELL 479

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
               + G  P   +Y  +++ YF+  +P+ A   W EM KR     + TY  +I GL   
Sbjct: 480 RSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTI 539

Query: 426 SKVEEACFLLEEVVNKGL 443
            K+ EA   L E++ KGL
Sbjct: 540 GKLTEAIDKLNELMKKGL 557



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 141/300 (47%), Gaps = 19/300 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETI---CKRVKNKVKPNANTYNIL------------G 218
           +P + A N +L AL +        ++      +  ++ PN  T+N+L             
Sbjct: 170 RPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADA 229

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           + TL  M   G +PD  TYNT +   C+  M+ EA  L   M+ +G    +PT  TY  +
Sbjct: 230 LSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEG---IAPTRATYNTL 286

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG- 337
           + A  +   +++  +++  M   G  PD+ TY  +  G+C AGKV+EA+K  +EM +   
Sbjct: 287 VSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSI 346

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+VTYN  +      +   +AL L   M + G   S+ T+N+++      G+ + A 
Sbjct: 347 VSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEAL 406

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
                M + G A DV TY  +ID       V +A  L++E+V  GLK+     ++ L  L
Sbjct: 407 GRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNL 466



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 181/426 (42%), Gaps = 42/426 (9%)

Query: 56  EAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI------------------ 97
           E I      Y+ +  A   LG      +VV  +  F FE  +                  
Sbjct: 274 EGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDE 333

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           AF+      H    + + + YN ++D     +  +    L+  M D   +++ V   + V
Sbjct: 334 AFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVV 393

Query: 158 LLMI----LKQYTEKIKVKTQ----PEINALNLLLDALCKCGLVDYAETICKR-VKNKVK 208
             +     L++   ++K+ T+    P++   N L+DA CK   V  A  +    V++ +K
Sbjct: 394 KGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLK 453

Query: 209 PNANTYNIL--------GMQTLEEMI----QMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
            +  T N L          +  EE++    Q G  PD  +Y T +  + K      A  L
Sbjct: 454 MDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYL 513

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           ++ M  +  T   P+  TY  +I  L    ++ E    L  ++  G +PD +TY  ++  
Sbjct: 514 WDEMSKRKLT---PSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHA 570

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C  G +E+A++F  +M    + PD+VT N  +  LC +   ++A++L+    E G    
Sbjct: 571 YCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVD 630

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TYN LI    + G+ D A   + +M+ RG   D  TY V++  L +  + EEA  +L 
Sbjct: 631 VITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLH 690

Query: 437 EVVNKG 442
           ++   G
Sbjct: 691 KLDESG 696



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 81/193 (41%)

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           + R+   AA L    R +G    S  A    +  +A   +   +    +   +I     P
Sbjct: 149 RLRLPHLAAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHP 208

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +  T+  ++   C  G + +A   L  M   G  PD+VTYN  LK  C      EA  L 
Sbjct: 209 NHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLL 268

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            RM + G  P+  TYN L+S Y  LG    A      M   G   D+ TY V+  GL   
Sbjct: 269 ARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQA 328

Query: 426 SKVEEACFLLEEV 438
            KV+EA  L +E+
Sbjct: 329 GKVDEAFKLKDEM 341



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 170/445 (38%), Gaps = 83/445 (18%)

Query: 55  YEAIIDNSNAYDNMEKALDSL------GV--PLTTDSVV--GVLQRFQFEEKIAFRFFMW 104
           Y  ++D    Y     AL+ L      GV   L T ++V  G+ +  Q EE +  R  M 
Sbjct: 354 YNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALG-RLKMM 412

Query: 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN---KVFVPVDVLLMI 161
              ++  A + + YN +ID     +  AK F L    +D M R+      F  ++ LL  
Sbjct: 413 T--EEGLAPDVITYNTLIDAYCKARNVAKAFVL----MDEMVRSGLKMDTFT-LNTLLYN 465

Query: 162 L---KQYTEKIKVKTQPEINAL-------NLLLDALCKCGLVDYAETICKRV-KNKVKPN 210
           L   K+Y E  ++   P              ++ A  K    + A  +   + K K+ P+
Sbjct: 466 LCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPS 525

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             TYN L             +  L E+++ G  PD+ TYN  I  +CK   + +A   F+
Sbjct: 526 IYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKA---FQ 582

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
           F          P   T   ++  L  + ++E+   L       G   DV TY  +++ +C
Sbjct: 583 FHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALC 642

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG------ 372
             G V+ A  F  +M  +G  PD  TYN  L  L +    +EA  +  ++ E G      
Sbjct: 643 KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERF 702

Query: 373 CWPSV------------------------------QTYNMLISMYFELGEPDGAFETWHE 402
            +P +                              ++YN  +      G+   A     E
Sbjct: 703 SYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDE 762

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSK 427
           M ++G + D  TY  +++GL    K
Sbjct: 763 MMQKGMSVDSSTYITLMEGLIKRQK 787


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 25/266 (9%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
           T+P++   ++++DALCK   +D A                      +  L EM Q    P
Sbjct: 199 TKPDVRTYSIVIDALCKDINLDAA----------------------INLLNEMKQKNIPP 236

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           + FTYN+ ID  CK     +   L   M        +P   T++I+I  L +  ++E+  
Sbjct: 237 NIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNI---NPNVHTFSILIDGLCKEGKVEDAD 293

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            ++ HMI  G  PD+ TY  +++G CL G+V+ A +    + +KG  P+I +Y+  +   
Sbjct: 294 EVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGY 353

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C  KN  +A++L+G + + G  P   TY+ ++    E+G    A + + EM + G   D+
Sbjct: 354 CKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDI 413

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEV 438
             +  ++ G F    VEEA  L  ++
Sbjct: 414 CLHSTLLFGYFKYGLVEEAMLLFSKL 439



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 143/341 (41%), Gaps = 54/341 (15%)

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNA 211
           + +D  + +L +  +K      P I   N L+D LCK G  +  +T+   + N  + PN 
Sbjct: 217 INLDAAINLLNEMKQK---NIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNV 273

Query: 212 NTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
           +T++IL  G+          + +  MI+ G  PD  TY+  +D +C    V  A  +F  
Sbjct: 274 HTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNV 333

Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
           +R KG     P   +Y+I+I    +   + +   L G +   G  PD  TY  +L G+  
Sbjct: 334 LRDKGI---KPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390

Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVT----------------------------------- 344
            G++ +A K  +EM   G  PDI                                     
Sbjct: 391 VGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISF 450

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y   +  LC N    EA  ++ ++  +G  P V+TYN++I+ +   G  D       +M+
Sbjct: 451 YTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKME 510

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             GC  +  TY V++ G F  +K+ E    ++E+  +G   
Sbjct: 511 DNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSF 551



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 5/261 (1%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
           +L   L +  + +  E +   V N +    +T   L +  L  M Q    PD  TY+  I
Sbjct: 153 VLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSL--LRIMEQGNTKPDVRTYSIVI 210

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           D  CK   +  A +L   M+ K      P   TY  +I  L +  + E+  +LL  M+N 
Sbjct: 211 DALCKDINLDAAINLLNEMKQKNI---PPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNL 267

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
              P+V T+  +++G+C  GKVE+A + +  M  KG  PDI+TY+  +   C     D A
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRA 327

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            R++  + + G  P++ +Y++LI+ Y +      A + + E+ ++G   D  TY  ++ G
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 422 LFDCSKVEEACFLLEEVVNKG 442
           L +  ++ +A  + +E++  G
Sbjct: 388 LIEVGRIGDAKKIFDEMLRVG 408



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 3/242 (1%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+   Y T ++   K     +   L   M  +G+T   P  +TY+I+I AL ++  ++  
Sbjct: 166 PNEVMYGTVMNGLSKRGHTEKTLSLLRIME-QGNT--KPDVRTYSIVIDALCKDINLDAA 222

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            +LL  M      P++ TY  +++G+C  G+ E+    L EM N    P++ T++  +  
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC     ++A  +   MIE G  P + TY+ ++  Y   G+ D A   ++ +  +G   +
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPN 342

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
           + +Y ++I+G      + +A  L  E+  KGLK     + + L  L  +G +G   K+ D
Sbjct: 343 IFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFD 402

Query: 472 HM 473
            M
Sbjct: 403 EM 404



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 16/267 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           I+   +P+I   + ++D  C  G VD A  +   +++K +KPN  +Y+IL          
Sbjct: 300 IEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNL 359

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              MQ   E+ Q G  PD  TY+T +    +   + +A  +F+ M   G T   P    +
Sbjct: 360 AKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPT---PDICLH 416

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + ++    +   +EE   L   +  +    ++S Y  V+ G+C   +V EA+   E++ +
Sbjct: 417 STLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPS 476

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  PD+ TYN  +   C     DE   +  +M + GC  +  TYN+++  +F   +   
Sbjct: 477 IGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISE 536

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGL 422
                 EM  RG + D  T  V+I+ L
Sbjct: 537 IVSFMKEMAGRGFSFDATTTGVLINVL 563



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 4/210 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFE-FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           T+NT +        VT+A  LF+  +R K   I  P    Y  ++  L +    E+  SL
Sbjct: 134 TFNTLLGGLFAENKVTDAVVLFKKLVREK---ICEPNEVMYGTVMNGLSKRGHTEKTLSL 190

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           L  M      PDV TY  V++ +C    ++ A   L EM  K  PP+I TYN  +  LC 
Sbjct: 191 LRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCK 250

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               ++   L   M+ +   P+V T+++LI    + G+ + A E    M ++G   D+ T
Sbjct: 251 LGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIIT 310

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           Y  ++DG     +V+ A  +   + +KG+K
Sbjct: 311 YSAIMDGYCLRGQVDRARRVFNVLRDKGIK 340



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 27/194 (13%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILGMQT 221
           K + E ++V   P+I   + LL    K GLV+ A  +  ++ +N+   N + Y ++    
Sbjct: 399 KIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVV---- 454

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
                              I+  CK   V EA  +FE + + G     P  +TY +MI  
Sbjct: 455 -------------------INGLCKNDRVREAHAIFEKLPSIGLI---PDVRTYNVMITG 492

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +    +E   +L  M ++GC  +  TY  +++G   + K+ E   F++EM  +G+  D
Sbjct: 493 FCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFD 552

Query: 342 IVTYNCFLKVLCDN 355
             T    + VL +N
Sbjct: 553 ATTTGVLINVLKEN 566



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 1/205 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   ++ +   ++         SL   M   G     S    V    CL  +++ A+  
Sbjct: 60  PSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSV 119

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYF 388
           L      G P ++VT+N  L  L       +A+ L+ +++ E  C P+   Y  +++   
Sbjct: 120 LPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLS 179

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G  +        M++     DV TY ++ID L     ++ A  LL E+  K +     
Sbjct: 180 KRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIF 239

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHM 473
            ++S +  L  +G    +  L   M
Sbjct: 240 TYNSLIDGLCKLGQWEKVKTLLSEM 264


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MI  G+ PD F YN  I+ +CKA  + +A  L+  M  +G T   P   TY  +I  L Q
Sbjct: 20  MITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLT---PDKVTYNTLIHGLCQ 76

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+ E   L  +M  +G LPD+  Y  +L+G+C  G + +A++    M +    PD+V 
Sbjct: 77  LGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVM 136

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           YN  +  +C + N  +A  L+  +   G  P+VQ Y  +I+   + G  D A E +  M+
Sbjct: 137 YNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNME 196

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + GC  D  +Y V+I G         A  L+ E+ ++G 
Sbjct: 197 EDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGF 235



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 25/241 (10%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P++   N+L++  CK   +D A+                      Q   EMI  G  PD
Sbjct: 26  KPDVFCYNILINGYCKATRIDKAK----------------------QLYNEMILQGLTPD 63

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TYNT I   C+   + EA DLF+ M   G+    P    Y+I++  L +   + + F 
Sbjct: 64  KVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNL---PDLFAYSILLDGLCKQGYLGKAFR 120

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M +S   PD+  Y  +++ MC +G +++A +   E+  KG  P++  Y   +  LC
Sbjct: 121 LFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLC 180

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                DEAL  +  M E GC P   +YN++I  + +  +   A     EM  RG   DV 
Sbjct: 181 KEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIADVG 240

Query: 414 T 414
           T
Sbjct: 241 T 241



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 25/215 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           Y E I     P+    N L+  LC+ G +  A+ + K                       
Sbjct: 52  YNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFK----------------------N 89

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M + G+ PD F Y+  +D  CK   + +A  LF  M+   S+   P    Y I++ A+ +
Sbjct: 90  MHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQ---SSSLKPDLVMYNILVDAMCK 146

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           +  +++   L   +   G  P+V  Y  ++ G+C  G ++EA +    M   G PPD  +
Sbjct: 147 SGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFS 206

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           YN  ++    +K+   A+ L G M + G    V T
Sbjct: 207 YNVIIRGFLQHKDESRAVHLIGEMRDRGFIADVGT 241



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%)

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   L   MI  G  PDV  Y  ++ G C A ++++A +   EM  +G  PD VTYN  +
Sbjct: 12  EARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLI 71

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC      EA  L+  M + G  P +  Y++L+    + G    AF  +  M      
Sbjct: 72  HGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLK 131

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D+  Y +++D +     +++A  L  E+  KGL+
Sbjct: 132 PDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQ 166



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 60/129 (46%)

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G  L  +V EA K  + M  KGY PD+  YN  +   C     D+A +LY  MI  G  P
Sbjct: 3   GYSLCMEVVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTP 62

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
              TYN LI    +LG    A + +  M K G   D+  Y +++DGL     + +A  L 
Sbjct: 63  DKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLF 122

Query: 436 EEVVNKGLK 444
             + +  LK
Sbjct: 123 RAMQSSSLK 131


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 135/318 (42%), Gaps = 60/318 (18%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           + + E +    QP +   N+L+D LCK G V  A+ +                      L
Sbjct: 290 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDL----------------------L 327

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E MIQ G  P+  TYN+ I+ FC    +  A +LF  M +KG     P    Y ++I   
Sbjct: 328 EVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC---EPDVICYTVLINGY 384

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  ++EE   L   M+  G  PDV TY  +L G+   GKV +A K    M   G P D+
Sbjct: 385 CKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDL 444

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRM------IEVGCW---------------------- 374
             Y  FL  LC N    EA+ L+ ++      +++ C+                      
Sbjct: 445 YIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEK 504

Query: 375 -------PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
                  P V TYN++I  +   G+   A   + +M+K GC  D  TY  +I G F+  K
Sbjct: 505 LPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKK 564

Query: 428 VEEACFLLEEVVNKGLKL 445
           +E+   LL  +V + + L
Sbjct: 565 LEKVVELLHMMVQRDVSL 582



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 141/321 (43%), Gaps = 24/321 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P+   LN+LL+ LC    V     +   + +    P+  TY  L                
Sbjct: 129 PDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALL 188

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS---SPTAKTYAIM 278
              M ++G  P+  TY T +   C+   ++ A  L + M    S       P   +Y+I+
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSII 248

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I AL ++ R +E   L   M   G  P V +Y  ++         EEA +   EM N+G 
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEMVNQGV 300

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P++VT+N  + VLC      EA  L   MI+ G  P++ TYN LI  +  +G+ + A E
Sbjct: 301 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 360

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            +  M  +GC  DV  Y V+I+G    SKVEEA  L   ++  G +   + + + L  L 
Sbjct: 361 LFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLF 420

Query: 459 VIGDLGAIHKLSDHMRKFYNP 479
             G +G   KL   M+ +  P
Sbjct: 421 QGGKVGDAKKLFGVMKVYGIP 441



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 43/332 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P+I     L+  LC    +  A  +  R+ K    PNA TY  L             ++ 
Sbjct: 164 PDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKL 223

Query: 222 LEEMIQ------MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------- 268
            +EM+       +   P   +Y+  ID  CK R   EA DLFE M+ +G T +       
Sbjct: 224 HQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSL 283

Query: 269 -----------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
                             P   T+ ++I  L +  ++ E   LL  MI  G +P++ TY 
Sbjct: 284 MWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++EG CL G +  A +    M +KG  PD++ Y   +   C     +EA++LY  M++V
Sbjct: 344 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQV 403

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P V+TY  L++  F+ G+   A + +  M   G   D+  Y + ++GL     + EA
Sbjct: 404 GKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEA 463

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             L  ++ +  +KL    F+  +  L   G L
Sbjct: 464 MELFNKLKSYNIKLDIECFNCLIDGLCKAGKL 495



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 14/226 (6%)

Query: 231 APDNF----TYNTAIDTF---CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +P NF    ++   +  F   CK   +T A   F+F      +  +P   ++  ++  L 
Sbjct: 49  SPQNFNTPISFQQQLSMFLHNCKTGNIT-AIQAFQFFHLMMYSNPTPPLSSFTHLLSGLA 107

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +     + F L   M  SG  PD  T   +L  +C   +V E    +  +  +GY PDIV
Sbjct: 108 KIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIV 167

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +K LC      +A  L+ RM ++GC P+  TY  L+      G    A +   EM
Sbjct: 168 TYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEM 227

Query: 404 DKRGCAQDVD------TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                   ++      +Y ++ID L    + +EA  L EE+  +G+
Sbjct: 228 LNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGM 273


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 136/295 (46%), Gaps = 16/295 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
           + + + +  +  P +     ++  LC+ G +  AE +   +K   ++PN  TYN+L    
Sbjct: 199 EMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGH 258

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                        +E++  G  P+   + T ID FCKA+  +EA D+F  M   G    +
Sbjct: 259 CQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGV---A 315

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           PT   Y  ++    ++   +E  SL   M   G  PD  T   V+ G+C  G+++ A +F
Sbjct: 316 PTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARF 375

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           LE +   G   +   YN  +   C N N +EAL    RM EVG  P+V +Y+ LI  + +
Sbjct: 376 LEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSK 435

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           LG+   A   + EM  +G   +V TY  +I G      ++ A    +E++  G+ 
Sbjct: 436 LGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGIS 490



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 13/295 (4%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM----------QTLEEMIQM 228
           AL +L+ AL + GL+D A  + +R+       A    + G+          +  +EM++ 
Sbjct: 113 ALGVLVIALSQMGLLDEALYVFRRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRR 172

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P   TYNT I+       V +A ++++ M  +      P   TY  MI  L +   +
Sbjct: 173 GMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQI---DPNVITYTSMICVLCEEGCI 229

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            +   L   M  +G  P+  TY  ++ G C    V  A+   +E+ N G  P+ V +   
Sbjct: 230 GDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTL 289

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +   C  K   EA  ++  M   G  P+V  YN L+   F  G+   A   + EM + G 
Sbjct: 290 IDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGL 349

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             D  T  +++ GL D  +++ A   LE V   G+ L    +++ + +    G+L
Sbjct: 350 CPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNL 404



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 127/323 (39%), Gaps = 51/323 (15%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL----------- 217
           ++ T P + A N +LD L K      A E   + ++  + P+  TYN L           
Sbjct: 136 RLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVA 195

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              +  ++M+     P+  TY + I   C+   + +A  LF+ M+  G     P   TY 
Sbjct: 196 KAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGM---RPNQYTYN 252

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           +++    Q D +   F L   ++NSG +P+   +  +++G C A +  EA     +M   
Sbjct: 253 VLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRF 312

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP--------------------- 375
           G  P +  YN  +     + +  EAL LY  M  +G  P                     
Sbjct: 313 GVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVA 372

Query: 376 --------------SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
                         +   YN LI  Y   G  + A  T   M + G   +V +Y  +IDG
Sbjct: 373 ARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDG 432

Query: 422 LFDCSKVEEACFLLEEVVNKGLK 444
                K++ A  +  E+V KG++
Sbjct: 433 HSKLGKMQIAMAIYTEMVAKGIE 455



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           Y E +     P       L+D  CK      A+ + + + +  V P    YN L      
Sbjct: 271 YQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFR 330

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +   +EM ++G  PD FT +  +   C    +  AA   E +R  G  ++   
Sbjct: 331 SGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLN--- 387

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           A  Y  +I    +N  +EE  +    M   G  P+V +Y  +++G    GK++ A     
Sbjct: 388 AAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYT 447

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           EM  KG  P++VTY   +     N   D A R +  MIE G  P+  T ++L+
Sbjct: 448 EMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLV 500



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 27/206 (13%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL--- 217
           L   T   +V  +P + + + L+D   K G +  A  I  + V   ++PN  TY  L   
Sbjct: 408 LATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHG 467

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTI 267
                      +  +EMI+ G +P+  T +  +D  C+   V +A   + E    K S I
Sbjct: 468 HAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDI 527

Query: 268 SS-------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
            S             P +  Y  +I  L  + +  E   L  +M  SG + D  TY  ++
Sbjct: 528 HSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLI 587

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPP 340
            G C+ G V  A     +M   G  P
Sbjct: 588 RGQCMLGYVLNAMMLYADMMKIGVKP 613


>gi|255661018|gb|ACU25678.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 376

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 3/223 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L  MI+ G  P+   YN  I+    A    +A  +F+ M   G+T  SPT  TY  +
Sbjct: 149 VSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIRVFQEM---GNTHCSPTIITYNTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L + +R  E + L+  M+  G  P V TY  +++G+CL  KVE A     ++ NKG+
Sbjct: 206 INGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLLIKGLCLGRKVEMALHLWNQVINKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ T+N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWNCAPNLVTHNTLMZGFYKDGDIRNALA 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           TW  + + G   D+ +Y + + GL  C+++  A   L + + K
Sbjct: 326 TWARILRNGVQPDIISYNITLKGLCSCNRISGAILFLHDALTK 368



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 4/254 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G   D F Y+  I+  CK   + +A  +   M   G     P A  Y  +I  LV   + 
Sbjct: 124 GGVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCM---PNAHVYNALINGLVGASKF 180

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E+   +   M N+ C P + TY  ++ G+C A +  EAY  ++EM  KG+ P ++TY+  
Sbjct: 181 EDAIRVFQEMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLL 240

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +K LC  +  + AL L+ ++I  G  P VQ +N+LI     +G+   A   + +M++  C
Sbjct: 241 IKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWNC 300

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIH 467
           A ++ T+  +++G +    +  A      ++  G++     ++  L  L     + GAI 
Sbjct: 301 APNLVTHNTLMZGFYKDGDIRNALATWARILRNGVQPDIISYNITLKGLCSCNRISGAIL 360

Query: 468 KLSDHMRKFYNPVI 481
            L D + K   P I
Sbjct: 361 FLHDALTKKIFPTI 374



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 4/220 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +E+++   +PD   YN  ++ F K   + +  +L+E M  +G         ++ IM+  L
Sbjct: 14  KEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGR----NVASFNIMMRGL 69

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             N ++ E  S+   M  SG + D  TY  ++ G+C  G + ++   LE    KG   D 
Sbjct: 70  FDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEIAEVKGGVLDA 129

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
             Y+  +  LC +   D+A+ +   MI+ GC P+   YN LI+      + + A   + E
Sbjct: 130 FAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIRVFQE 189

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           M    C+  + TY  +I+GL    +  EA  L++E++ KG
Sbjct: 190 MGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKG 229



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A  +Y  ++E    P    YN +++ +F++G     FE W  M K G  ++V
Sbjct: 1   CESGDIDAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEG-GRNV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ +M+ GLFD  KV E   + E +   G 
Sbjct: 60  ASFNIMMRGLFDNGKVNEVISIWELMKKSGF 90



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 18/197 (9%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++ + E       P I   N L++ LCK      A  + K +  K   P   TY++L   
Sbjct: 184 IRVFQEMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLLIKG 243

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL-FEFMRTKGSTI 267
                     +    ++I  G  PD   +N  I   C       A  L F+  R      
Sbjct: 244 LCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWN---- 299

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            +P   T+  ++    ++  +    +    ++ +G  PD+ +Y   L+G+C   ++  A 
Sbjct: 300 CAPNLVTHNTLMZGFYKDGDIRNALATWARILRNGVQPDIISYNITLKGLCSCNRISGAI 359

Query: 328 KFLEEMGNKGYPPDIVT 344
            FL +   K   P I+T
Sbjct: 360 LFLHDALTKKIFPTIIT 376



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C +G ++ A    +E+      PD V YN  L          +   L+  M + G   +V
Sbjct: 1   CESGDIDAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGG-RNV 59

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            ++N+++   F+ G+ +     W  M K G  +D  TY +++ GL     + ++  +LE 
Sbjct: 60  ASFNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEI 119

Query: 438 VVNKG 442
              KG
Sbjct: 120 AEVKG 124


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 174/395 (44%), Gaps = 35/395 (8%)

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVDVLLMILKQYTE 167
           L+ D+L  T  +A++ R  C     +K                  V V  + +  + Y E
Sbjct: 289 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 348

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------- 217
            ++   Q  +  LN++++ALCK   ++  ++    ++ K V P+  TYN L         
Sbjct: 349 VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 408

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                + ++ M   G  P  FTYN  I+  CK      A  + + M   G    SP   T
Sbjct: 409 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG---MSPDTAT 465

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y I++V   +ND M +   +   M + G +PD+ ++  ++  +   G +++A K+  +M 
Sbjct: 466 YNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMK 525

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           N G  PD V Y   +   C N    EAL++   M+E GC   V TYN +++   +     
Sbjct: 526 NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLS 585

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
            A E + EM +RG   D  T+  +I+G      + +A  L E ++ + LK     +++ +
Sbjct: 586 EADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLI 645

Query: 455 MQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489
                  ++  +++L       +N +I+RR+  N 
Sbjct: 646 DGFCKGSEMEKVNEL-------WNDMISRRIYPNH 673



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 45/315 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L++A C+ GL++ A  +   +  K +KP   TYN +                
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
           L+EM+++G +PD  TYN  +   C+   + +A  +F+ M ++G                 
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 269 -------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                              +P    Y I+I    +N  M E   +   M+  GC  DV T
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVT 570

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +L G+C    + EA +   EM  +G  PD  T+   +     + N ++A+ L+  MI
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMI 630

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           +    P V TYN LI  + +  E +   E W++M  R    +  +Y ++I+G  +   V 
Sbjct: 631 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 690

Query: 430 EACFLLEEVVNKGLK 444
           EA  L +E+V KG +
Sbjct: 691 EAFRLWDEMVEKGFE 705



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 17/302 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--- 217
           LK   E ++     ++   N +L+ LCK  ++  A E   +  +  V P+  T+  L   
Sbjct: 553 LKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 612

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +   E MIQ    PD  TYNT ID FCK   + +  +L+  M ++     
Sbjct: 613 YXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY-- 670

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   +Y I+I        + E F L   M+  G    + T   +++G C AG   +A +
Sbjct: 671 -PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 729

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           FL  M  KG  PD +TYN  +      +N D A  L  +M   G  P V TYN++++ + 
Sbjct: 730 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G    A     +M +RG   D  TY  +I+G    + ++EA  + +E++ +G  +P  
Sbjct: 790 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF-VPDD 848

Query: 449 KF 450
           KF
Sbjct: 849 KF 850



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 2/182 (1%)

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
           T G+  S+P    + +++   VQ  ++ E       + + G    ++    +L G+   G
Sbjct: 280 TYGNCGSNPLV--FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVG 337

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
            V+ A++  +E+   G   ++ T N  +  LC N+  +        M E G +P V TYN
Sbjct: 338 WVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYN 397

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            LI+ Y   G  + AFE    M  +G    V TY  +I+GL    K   A  +L+E++  
Sbjct: 398 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 457

Query: 442 GL 443
           G+
Sbjct: 458 GM 459


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILG----------MQT 221
           P+I   N ++  L K G ++ A T    ++ + +KP+A T+   ILG           + 
Sbjct: 417 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 476

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  P+N  Y   I+   KA  + EA  +F  +   G     P  +T +  I  
Sbjct: 477 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL---PDVQTCSAFIHG 533

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L++N R++E   +   +   G +PDV TY  ++ G C  G+VE+A++  +EM  KG  P+
Sbjct: 534 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPN 593

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I  YN  +  LC + +   A +L+  M E G  P   TY+ +I  Y +      AF  +H
Sbjct: 594 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 653

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +G       Y  ++ G      +E+A  L  E++ KG 
Sbjct: 654 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 135/306 (44%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+  LCK G ++ A  I K  +    KPN+ T+ +L             ++ L+EM +
Sbjct: 283 NVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 342

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P   +Y   I+  C  + ++ A  L E M   G     P    Y+ +I+      R
Sbjct: 343 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGL---KPNVVVYSTLIMGYASEGR 399

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   LL  M  SG  PD+  Y  ++  +  AGK+EEA  +L E+  +G  PD VT+  
Sbjct: 400 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA 459

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           F+          EA + +  M++ G  P+   Y +LI+ +F+ G    A   +  +   G
Sbjct: 460 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 519

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV T    I GL    +V+EA  +  E+  KGL      + S +      G++    
Sbjct: 520 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 579

Query: 468 KLSDHM 473
           +L D M
Sbjct: 580 ELHDEM 585



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 143/328 (43%), Gaps = 23/328 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL 217
           LK ++E  +    P++   + L+   CK G V+ A    + +C +    + PN   YN L
Sbjct: 544 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK---GIAPNIFIYNAL 600

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         +  + M + G  PD+ TY+T ID +CK+  V EA  LF  M +KG 
Sbjct: 601 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 660

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P +  Y  ++    +   ME+  +L   M+  G    +S +  +++G C + K++E
Sbjct: 661 ---QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQE 716

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +  +EM  K   PD VTY   +   C     +EA  L+  M E        TY  L+ 
Sbjct: 717 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 776

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            Y +LG+    F  + +M  +G   D  TY ++I        + EA  L +EVV KG+  
Sbjct: 777 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 836

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                D  +  L    DL    KL D M
Sbjct: 837 KGTIHDLLITALCKREDLTEASKLLDEM 864



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 179/444 (40%), Gaps = 51/444 (11%)

Query: 66  DNMEKALDSLGVP--LTTDSVVGVLQRFQF-EEKIAFRFFMWAGHQDNYAHEPLAYNLMI 122
           +N +  + S  +P  L  D +  VL + Q  + K    FF W+  Q        +++   
Sbjct: 52  NNWKTIMVSSHIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFS--- 108

Query: 123 DILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV-DVLLMILKQYTEKIKVKTQPEINALN 181
            IL+     ++ F L   +L  M R       + D +L   + Y     V         +
Sbjct: 109 -ILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPV-------VFD 160

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
           +L+D+  + G++D A  +    KN    ++   +++   +L  M + G  P+ +TY    
Sbjct: 161 ILIDSYKRMGMLDEAANVFFVAKN----DSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 242 DTFCKARMVTEA-----------------------------ADLFEFMRTKGSTISSPTA 272
              C+A+ + EA                              D+ E +R K   +S    
Sbjct: 217 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP 276

Query: 273 K---TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
               TY ++I  L +  +ME+   +L  MI  GC P+  T+  ++EG C    +  A + 
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALEL 336

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L+EM  +   P  V+Y   +  LC  K+   A +L  +M   G  P+V  Y+ LI  Y  
Sbjct: 337 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 396

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G  + A      M   G A D+  Y  +I  L    K+EEA   L E+  +GLK     
Sbjct: 397 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 456

Query: 450 FDSYLMQLSVIGDLGAIHKLSDHM 473
           F ++++  S  G +    K  D M
Sbjct: 457 FGAFILGYSKTGKMTEAAKYFDEM 480



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 15/278 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           QP     N L+   CK G ++ A  + + +  K      ++N L              Q 
Sbjct: 661 QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQL 720

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EMI     PD+ TY T ID  CKA  + EA  LF+ M+ +   + + T   Y  ++  
Sbjct: 721 FQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVT---YTSLMYG 777

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +  E F+L   M+  G  PD  TY  V+   C    + EA+K  +E+  KG    
Sbjct: 778 YNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK 837

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              ++  +  LC  ++  EA +L   M E+G  PS+   + L+  + E G+ D A   + 
Sbjct: 838 GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 897

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
            +   G   D  T   +++G  + +  E+A  L++++V
Sbjct: 898 GVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 121/283 (42%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N L+D LCK G +  A  +   +  K ++P++ TY+ +                
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G  P +F YN  +   CK   + +A +LF  M  KG      T  ++  +I  
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA----TTLSFNTLIDG 707

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++ +++E   L   MI    +PD  TY  V++  C AGK+EEA    +EM  +    D
Sbjct: 708 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 767

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTY   +          E   L+ +M+  G  P   TY ++I  + +      AF+   
Sbjct: 768 TVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRD 827

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           E+  +G       + ++I  L     + EA  LL+E+   GLK
Sbjct: 828 EVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 870



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 17/283 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P+    + ++D  CK   V  A ++   + +K V+P++  YN L             M 
Sbjct: 626 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 685

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+Q G A    ++NT ID +CK+  + EA+ LF+ M  K      P   TY  +I 
Sbjct: 686 LFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIM---PDHVTYTTVID 741

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  +MEE   L   M     + D  TY  ++ G    G+  E +   E+M  KG  P
Sbjct: 742 WHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKP 801

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D VTY   +   C   N  EA +L   ++  G       +++LI+   +  +   A +  
Sbjct: 802 DEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLL 861

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM + G    +     ++    +  K++EA  + E V + GL
Sbjct: 862 DEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGL 904


>gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
 gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
          Length = 527

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 194/459 (42%), Gaps = 50/459 (10%)

Query: 33  VPSLVCKVFDESSDS------VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVG 86
           +P    K  D  SDS      +S   KL    +        +E+AL ++ + +  D +  
Sbjct: 48  LPIPTSKTPDSQSDSKSIDGFLSPEDKLRGIFLQKLKGKAAIEQALSNVCIDVNVDIIGK 107

Query: 87  VLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK 146
           VL       +    FF WA  Q     +  +Y++++  L   K+    F  +  +LD M+
Sbjct: 108 VLNFGNLGGEAMVMFFNWALKQPMVPRDVGSYHVIVKALGRRKF----FVFMMQVLDEMR 163

Query: 147 RNNKVFVPVDVLLM--ILKQYTEKIKVKTQPEI-------------NALNLLLDALCKCG 191
            N    +  D+L++  ++  +     V    ++               LN+LL  LC+  
Sbjct: 164 LNG---IKADLLMLSIVIDSFVNAGHVSKAIQLFGNLDDLGLCRDTEVLNVLLSCLCRRC 220

Query: 192 LVDYAETICKRVKNKVKPNANTYNI-------LGM-----QTLEEMIQMGHAPDNFTYNT 239
            V  A ++   +K KV  N +TYN+       LG      + ++EM   G +PD  T   
Sbjct: 221 HVGAAASVFNSMKGKVSFNVDTYNVVVGGWSKLGRVNEIEKVMKEMEVEGFSPDFNTLAF 280

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            ++   +A  + EA ++F  M+ K + I       Y  MI   +     +        M+
Sbjct: 281 FLEGLGRAGRMDEAVEVFGSMKEKDTAI-------YNAMIFNFISIGDFDGFMKYYNGML 333

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
           +  C P++ TY  ++       KV +A    +EM  +G  P   T   F+K LC      
Sbjct: 334 SDNCEPNIHTYSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSFIKQLCSYGPPY 393

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
            A+ +Y +  ++ C  S++ Y +L+    + G+       W EM + G + DV+ Y  +I
Sbjct: 394 AAMMIYKKTRKLECKISMEAYKILLMRLSKFGKCGSLLSVWQEMQECGYSSDVEVYEYII 453

Query: 420 DGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLM 455
            GL++  ++E A  ++EE + KG    +L Y K  + L+
Sbjct: 454 SGLYNIGQLENAVLVMEEALRKGFCPSRLVYSKLSNKLL 492



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 8/248 (3%)

Query: 214 YNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
           + +  MQ L+EM   G   D    +  ID+F  A  V++A  LF  +   G    +   +
Sbjct: 151 FFVFMMQVLDEMRLNGIKADLLMLSIVIDSFVNAGHVSKAIQLFGNLDDLGLCRDT---E 207

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
              +++  L +   +    S+   M       +V TY  V+ G    G+V E  K ++EM
Sbjct: 208 VLNVLLSCLCRRCHVGAAASVFNSMKGKVSF-NVDTYNVVVGGWSKLGRVNEIEKVMKEM 266

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G+ PD  T   FL+ L      DEA+ ++G M E         YN +I  +  +G+ 
Sbjct: 267 EVEGFSPDFNTLAFFLEGLGRAGRMDEAVEVFGSMKE----KDTAIYNAMIFNFISIGDF 322

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           DG  + ++ M    C  ++ TY  MI       KV +A  + +E++ +G+  P     S+
Sbjct: 323 DGFMKYYNGMLSDNCEPNIHTYSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSF 382

Query: 454 LMQLSVIG 461
           + QL   G
Sbjct: 383 IKQLCSYG 390



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 41/247 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKP--NANTYNILG-------MQTLEEM 225
           P+ N L   L+ L + G +D A  +   +K K     NA  +N +        M+    M
Sbjct: 273 PDFNTLAFFLEGLGRAGRMDEAVEVFGSMKEKDTAIYNAMIFNFISIGDFDGFMKYYNGM 332

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY---------- 275
           +     P+  TY+  I  F + R V +A  +F+ M  +G    + T  ++          
Sbjct: 333 LSDNCEPNIHTYSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSFIKQLCSYGPP 392

Query: 276 --AIMI-----------------VALVQNDRMEECFSLLG---HMINSGCLPDVSTYKEV 313
             A+MI                 + L++  +  +C SLL     M   G   DV  Y+ +
Sbjct: 393 YAAMMIYKKTRKLECKISMEAYKILLMRLSKFGKCGSLLSVWQEMQECGYSSDVEVYEYI 452

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           + G+   G++E A   +EE   KG+ P  + Y+     L  +   + A RL+ ++     
Sbjct: 453 ISGLYNIGQLENAVLVMEEALRKGFCPSRLVYSKLSNKLLASNLTERAYRLFLKIKHARS 512

Query: 374 WPSVQTY 380
             + ++Y
Sbjct: 513 LKNARSY 519


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 183  LLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL-----GMQTLE-------EMIQM 228
            ++  LCK      A+++  R   +  VKP   +YN L     G+   E       EM   
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 229  GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            G APD FTYN  +D   K+  + E  +L+E M         P   T+ I+I  LV+++ +
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSC---KPNTITHNIIIANLVKSNSL 876

Query: 289  EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            ++   L   +++    P   TY  +L+G+  +G++EEA +  EEM + G  P+   YN  
Sbjct: 877  DKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNIL 936

Query: 349  LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
            +       + + A  L+ RM+  G  P +++Y  L+    E G  D A   + ++ + G 
Sbjct: 937  INGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGL 996

Query: 409  AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
              D   Y +MIDGL    ++EEA  L +E+ ++G+      ++S ++ L V G +    K
Sbjct: 997  YLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGK 1056

Query: 469  LSDHMR 474
            L + ++
Sbjct: 1057 LYEELQ 1062



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 16/296 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQT------------LEEMIQ 227
           N L+  L + GL   A  + +R V   +KP+  T++ L + T            LEEM  
Sbjct: 198 NGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMES 257

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +G  P+ +TY   I    +A  + EA  + + M   G     P   TY ++I AL    +
Sbjct: 258 LGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGC---GPDVVTYTVLIDALCTAGK 314

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +++   L   M  S   PD  TY  +L+     G +    +F  EM   GY PD++T+  
Sbjct: 315 LDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTI 374

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC   N DEA  L   M + G  P++ TYN LIS    +   D A + ++ M+  G
Sbjct: 375 LVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLG 434

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
                 TY + ID      + ++A    E++  +G+       ++ L  L+ +G L
Sbjct: 435 VVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL 490



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 31/350 (8%)

Query: 136  RLVCSMLDYMKRNNKVFVPVDVLLMILKQ----------YTEKIKVKTQPEINALNLLLD 185
            RLVC  +    ++  V +P+  +L   KQ          +T+++ VK  P + + N L++
Sbjct: 744  RLVCGRV---CKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVK--PTLESYNFLIE 798

Query: 186  ALCKCGLVDYAETICKRVKNK-VKPNANTYNILG------------MQTLEEMIQMGHAP 232
                    + A  +   +KN    P+  TYN+L              +  E+MI     P
Sbjct: 799  GFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKP 858

Query: 233  DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
            +  T+N  I    K+  + +A DLF  +    S   SPT  TY  ++  L+++ R+EE  
Sbjct: 859  NTITHNIIIANLVKSNSLDKALDLFYDLV---SGDFSPTPCTYGPLLDGLLKSGRLEEAK 915

Query: 293  SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
             L   M++ GC P+ + Y  ++ G    G V  A +  + M  +G  PD+ +Y   +  L
Sbjct: 916  ELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCL 975

Query: 353  CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
            C+    D+AL  + ++ + G +     YN++I         + A   + EM  RG   D+
Sbjct: 976  CEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDL 1035

Query: 413  DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
             TY  +I  L     VE+A  L EE+   GL+     +++ +   S+ G+
Sbjct: 1036 FTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGN 1085



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 131/309 (42%), Gaps = 45/309 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P++    +L++ALCK G +D A  +   + K  V PN +TYN L             +  
Sbjct: 367 PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDL 426

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG----------------- 264
              M  +G  P  +TY   ID + K+    +A + FE M+ +G                 
Sbjct: 427 FNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAE 486

Query: 265 ---------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                          S   +P + TY +M+    +  +++E   LL  M  + C PD+  
Sbjct: 487 MGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIV 546

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
              ++  +  AG+V+EA+K    + +    P +VTYN  +  L        A+ L+  M 
Sbjct: 547 INSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMT 606

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             GC P+  T+N ++    +  E D A +  ++M    C  DV T+  +I GL    +V 
Sbjct: 607 GNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVS 666

Query: 430 EACFLLEEV 438
           +A +L  ++
Sbjct: 667 DAIWLFHQM 675



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 28/301 (9%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI---- 216
           L+ Y   +    +P +   + L+ A  K    +  +++ + +++  +KPN  TY I    
Sbjct: 214 LEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRV 273

Query: 217 LGM--------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           LG         + ++ M   G  PD  TY   ID  C A  + +A +LF  M+   ++  
Sbjct: 274 LGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMK---ASSH 330

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSL------LGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            P   TY  M+      D+  +C  L         M   G  PDV T+  ++  +C AG 
Sbjct: 331 KPDRVTYITML------DKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGN 384

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++EA+  L+ M  +G  P++ TYN  +  L      D+AL L+  M  +G  P+  TY +
Sbjct: 385 IDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYIL 444

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            I  Y + G  D A ET+ +M  RG A ++      +  L +  ++ EA  +   + + G
Sbjct: 445 FIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNG 504

Query: 443 L 443
           L
Sbjct: 505 L 505



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 126/255 (49%), Gaps = 9/255 (3%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M + G   + ++YN  I    ++ +  EA +++  M  +G     P+ KT++ ++VA  
Sbjct: 184 KMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGL---KPSLKTFSALMVATG 240

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +    E   SLL  M + G  P++ TY   +  +  AG+++EA + ++ M + G  PD+V
Sbjct: 241 KRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVV 300

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  LC     D+A+ L+ +M      P   TY  ++  + + G+     E W EM
Sbjct: 301 TYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEM 360

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +  G A DV T+ ++++ L     ++EA  LL+ +  +G+      ++      ++I  L
Sbjct: 361 EADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYN------TLISGL 414

Query: 464 GAIHKLSDHMRKFYN 478
             +++L D +  F N
Sbjct: 415 LRVNRLDDALDLFNN 429



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 126/308 (40%), Gaps = 59/308 (19%)

Query: 160  MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD-----YAETICKRVKNKVKPNANTY 214
            M    +TE       P++   NLLLDA  K G ++     Y + IC    +  KPN  T+
Sbjct: 808  MAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMIC----SSCKPNTITH 863

Query: 215  NIL-----------------------------------------------GMQTLEEMIQ 227
            NI+                                                 +  EEM+ 
Sbjct: 864  NIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD 923

Query: 228  MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             G  P+N  YN  I+ F K   V  A +LF+ M  +G     P  K+Y  ++  L +  R
Sbjct: 924  YGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGI---RPDLKSYTSLVGCLCEAGR 980

Query: 288  MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +++       +  +G   D   Y  +++G+  + ++EEA    +EM ++G  PD+ TYN 
Sbjct: 981  VDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNS 1040

Query: 348  FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
             +  L      ++A +LY  +  +G  P+V TYN LI  Y   G  D A+  +  M   G
Sbjct: 1041 LILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGG 1100

Query: 408  CAQDVDTY 415
            C+ +  T+
Sbjct: 1101 CSPNTGTF 1108



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 183  LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
            LLD L K G ++ A+ + +  V    +PN   YNIL              +  + M++ G
Sbjct: 901  LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960

Query: 230  HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              PD  +Y + +   C+A  V +A   FE ++  G  + S     Y +MI  L ++ R+E
Sbjct: 961  IRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIA---YNLMIDGLGRSHRIE 1017

Query: 290  ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            E  +L   M + G  PD+ TY  ++  + +AG VE+A K  EE+   G  P++ TYN  +
Sbjct: 1018 EALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALI 1077

Query: 350  KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +    + N D A  +Y RM+  GC P+  T+  L
Sbjct: 1078 RGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 132/318 (41%), Gaps = 55/318 (17%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTY----------NILGM--QT 221
           P++    +L+DALC  G +D A E   K   +  KP+  TY            LG   + 
Sbjct: 297 PDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEF 356

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G+APD  T+   ++  CKA  + EA  L + MR +G     P   TY  +I  
Sbjct: 357 WSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVL---PNLHTYNTLISG 413

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTY----------------KEVLEGM-------- 317
           L++ +R+++   L  +M   G +P   TY                 E  E M        
Sbjct: 414 LLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPN 473

Query: 318 ---CLA--------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG--DEALRL 364
              C A        G++ EA      + + G  PD VTYN  +K  C +K G  DEA+ L
Sbjct: 474 IVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMK--CYSKAGQVDEAIEL 531

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              M E  C P +   N LI+  ++ G  D A++ +  +     A  V TY  +I GL  
Sbjct: 532 LSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGK 591

Query: 425 CSKVEEACFLLEEVVNKG 442
             +V+ A  L   +   G
Sbjct: 592 EGQVQRAMELFASMTGNG 609



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 126/306 (41%), Gaps = 51/306 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P I    + +  L + G +D A  I KR+++    P+  TY +L             M+
Sbjct: 261 KPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAME 320

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M    H PD  TY T +D F     +    + +  M   G    +P   T+ I++ 
Sbjct: 321 LFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGY---APDVITFTILVN 377

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL--------------------- 319
           AL +   ++E F LL  M   G LP++ TY  ++ G+                       
Sbjct: 378 ALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVP 437

Query: 320 --------------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
                         +G+ ++A +  E+M  +G  P+IV  N  L  L +     EA  ++
Sbjct: 438 TAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIF 497

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            R+   G  P   TYNM++  Y + G+ D A E   +M +  C  D+     +I+ L+  
Sbjct: 498 NRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKA 557

Query: 426 SKVEEA 431
            +V+EA
Sbjct: 558 GRVDEA 563



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 19/284 (6%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNI------------L 217
           +K  P +   N L+  L K G V  A E       N   PN  T+N             L
Sbjct: 573 MKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDL 632

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            ++ L +M  M   PD  T+NT I      + V++A  LF  M+     + +P   T   
Sbjct: 633 ALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMK----KMLTPDCVTLCT 688

Query: 278 MIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++  +V+N  ME+ F +    ++  G   D   +++++ G+      E+   F + +   
Sbjct: 689 LLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCG 748

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDG 395
               D       +KVLC +K    A  ++ R   E+G  P++++YN LI  +  +   + 
Sbjct: 749 RVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEM 808

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           A+  + EM   GCA DV TY +++D      K+ E   L E+++
Sbjct: 809 AWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMI 852



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 3/238 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           T N  ++     R V +   +F  M+ +   I      TY I+   L     + +     
Sbjct: 126 TCNHMLEILRIHRRVGDMVVVFNLMQNQ---IIKRDLNTYLIIFKGLFIRGGLRQTPFAF 182

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
           G M  +G   +  +Y  ++  +  +G   EA +    M  +G  P + T++  +      
Sbjct: 183 GKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKR 242

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           ++ +    L   M  +G  P++ TY + I +    G  D A      M+  GC  DV TY
Sbjct: 243 RDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTY 302

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            V+ID L    K+++A  L  ++     K     + + L + S  GDLG + +    M
Sbjct: 303 TVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEM 360


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 146/302 (48%), Gaps = 19/302 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D+ L +LK+     K K + ++   N ++D LCK   +D A  +   + NK ++P+  T
Sbjct: 239 IDLALSLLKKME---KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFT 295

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y+ L              + L +MI+    P+  T++  ID F K   + EA  L++ M 
Sbjct: 296 YSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 355

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +      P   TY+ +I     +DR++E   +   MI+  C P+V TY  +++G C A 
Sbjct: 356 KRSI---DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +VEE  +   EM  +G   + VTY   +      ++ D A  ++ +M+ VG  P++ TYN
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 472

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           +L+    + G+   A   +  + +     D+ TY +MI+G+    KVE+   L   +  K
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532

Query: 442 GL 443
           G+
Sbjct: 533 GV 534



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 151/339 (44%), Gaps = 26/339 (7%)

Query: 109 DNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVL 158
           DN    P    Y+ +I  L +    +   RL+  M++     N V        FV    L
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
           +   K Y E IK    P+I   + L++  C    +D A+ + + + +K   PN  TY+ L
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                       GM+   EM Q G   +  TY T I  F +AR    A  +F+ M + G 
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P   TY I++  L +N ++ +   +  ++  S   PD+ TY  ++EGMC AGKVE+
Sbjct: 465 ---HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVED 521

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
            ++    +  KG  P+++ YN  +   C   + +EA  L  +M E G  P+  TYN LI 
Sbjct: 522 GWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIR 581

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
                G+ + + E   EM   G A D  T  ++ + L D
Sbjct: 582 ARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 620



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI------- 216
           + + +K +  P I   N LL A+ K    +   ++ ++++   +  +  TY+I       
Sbjct: 71  FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130

Query: 217 -----LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                L +  L +M+++G+ PD  T ++ ++ +C ++ +++A  L + M   G     P 
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY---KPD 187

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G ++ A   L+
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLK 247

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M       D+V YN  +  LC  K+ D+AL L+  M   G  P V TY+ LIS     G
Sbjct: 248 KMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 307

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    +V T+  +ID      K+ EA  L +E++ + +
Sbjct: 308 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 25/284 (8%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
           L + L    + +K+  +P+I  L+ LL+  C            KR+ + V          
Sbjct: 134 LSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS----------KRISDAV---------- 173

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
               +++M++MG+ PD FT+ T I         +EA  L + M  +G     P   TY  
Sbjct: 174 --ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC---QPDLVTYGT 228

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  L +   ++   SLL  M       DV  Y  +++G+C    +++A     EM NKG
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG 288

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD+ TY+  +  LC+     +A RL   MIE    P+V T++ LI  + + G+   A 
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           + + EM KR    D+ TY  +I+G     +++EA  + E +++K
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 16/294 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
           L  +TE      +P++   + L+  LC  G   D +  +   ++ K+ PN  T++ L   
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 337

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      +  +EMI+    PD FTY++ I+ FC    + EA  +FE M +K     
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-- 395

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+ +I    +  R+EE   L   M   G + +  TY  ++ G   A   + A  
Sbjct: 396 -PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             ++M + G  P+I+TYN  L  LC N    +A+ ++  +      P + TYN++I    
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 514

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + G+ +  +E +  +  +G + +V  Y  MI G       EEA  LL+++   G
Sbjct: 515 KAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 128/291 (43%), Gaps = 16/291 (5%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------- 217
           ++ I+ K  P +   + L+DA  K G LV+  +   + +K  + P+  TY+ L       
Sbjct: 317 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 376

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                     E MI     P+  TY+T I  FCKA+ V E  +LF  M  +G   ++ T 
Sbjct: 377 DRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT- 435

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
             Y  +I    Q    +    +   M++ G  P++ TY  +L+G+C  GK+ +A    E 
Sbjct: 436 --YTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           +      PDI TYN  ++ +C     ++   L+  +   G  P+V  YN +IS +   G 
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGS 553

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + A     +M + G   +  TY  +I         E +  L++E+ + G 
Sbjct: 554 KEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGF 604



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 10/295 (3%)

Query: 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           DY E +  R+ + +K + +  ++ G     +M++    P    +N  +    K       
Sbjct: 49  DYREILRNRLSDIIKVD-DAVDLFG-----DMVKSRPFPSIVEFNKLLSAVAKMNKFELV 102

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             L E M+T G    S    TY+I I    +  ++    ++L  M+  G  PD+ T   +
Sbjct: 103 ISLGEQMQTLGI---SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           L G C + ++ +A   +++M   GY PD  T+   +  L  +    EA+ L  +M++ GC
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P + TY  +++   + G+ D A     +M+K     DV  Y  +IDGL     +++A  
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
           L  E+ NKG++     + S +  L   G    A   LSD + +  NP +    AL
Sbjct: 280 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 334



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 3/253 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M  +G + D +TY+  I+ FC+   ++ A  +   M   G     P   T + ++   
Sbjct: 107 EQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGY---EPDIVTLSSLLNGY 163

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             + R+ +  +L+  M+  G  PD  T+  ++ G+ L  K  EA   +++M  +G  PD+
Sbjct: 164 CHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   + D AL L  +M +      V  YN +I    +    D A   + E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           MD +G   DV TY  +I  L +  +  +A  LL +++ + +      F + +      G 
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343

Query: 463 LGAIHKLSDHMRK 475
           L    KL D M K
Sbjct: 344 LVEAEKLYDEMIK 356



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 28/197 (14%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
           M+ KQ    + V   P I   N+LLD LCK G +  A  +              +  L  
Sbjct: 454 MVFKQM---VSVGVHPNILTYNILLDGLCKNGKLAKAMVV--------------FEYLQR 496

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            T+E        PD +TYN  I+  CKA  V +  +LF  +  KG    SP    Y  MI
Sbjct: 497 STME--------PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGV---SPNVIAYNTMI 545

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +    EE  SLL  M   G LP+  TY  ++      G  E + + ++EM + G+ 
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFA 605

Query: 340 PDIVTYNCFLKVLCDNK 356
            D  T      +L D +
Sbjct: 606 GDASTIGLVTNMLHDGR 622


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 142/331 (42%), Gaps = 51/331 (15%)

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNI 216
           L + L    + +K+  +P+I  L+ LL+  C    + D    + + V+   KP+  T+  
Sbjct: 134 LSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTT 193

Query: 217 L------------GMQTLEEMIQMGHAPDNFTY--------------------------- 237
           L             +  +++M+Q G  PD  TY                           
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR 253

Query: 238 --------NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
                   NT ID+ CK R V  A DLF  M TKG     P   TY  +I  L    R  
Sbjct: 254 IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGI---RPNVVTYNSLINCLCNYGRWS 310

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   LL +M+     P+V T+  +++     GK+ EA K  EEM  +   PD +TYN  +
Sbjct: 311 DASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLI 370

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C +   DEA +++  M+   C P++QTYN LI+ + +    +   E + EM +RG  
Sbjct: 371 NGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            +  TY  +I G F     + A  + +++V+
Sbjct: 431 GNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS 461



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 147/325 (45%), Gaps = 51/325 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI------- 216
           + + +K +  P I   N LL A+ K    +   ++ ++++   +  +  TY+I       
Sbjct: 71  FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130

Query: 217 -----LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                L +  L +M+++G+ PD  T ++ ++ +C ++ +++A  L + M   G     P 
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY---KPD 187

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG---------- 321
             T+  +I  L  +++  E  +L+  M+  GC PD+ TY  V+ G+C  G          
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLN 247

Query: 322 -------------------------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
                                     VE A     EM  KG  P++VTYN  +  LC+  
Sbjct: 248 KMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYG 307

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
              +A RL   M+E    P+V T+N LI  +F+ G+   A +   EM +R    D  TY 
Sbjct: 308 RWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYN 367

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNK 441
           ++I+G    ++++EA  + + +V+K
Sbjct: 368 LLINGFCMHNRLDEAKQMFKFMVSK 392



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 131/301 (43%), Gaps = 28/301 (9%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAET 198
           +++D + +   V V VD+       +TE      +P +   N L++ LC  G   D +  
Sbjct: 263 TIIDSLCKYRHVEVAVDL-------FTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315

Query: 199 ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
           +   ++ K+ PN  T+N L              +  EEMIQ    PD  TYN  I+ FC 
Sbjct: 316 LSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCM 375

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
              + EA  +F+FM +K      P  +TY  +I    +  R+E+   L   M   G + +
Sbjct: 376 HNRLDEAKQMFKFMVSKDCL---PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGN 432

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             TY  +++G   AG  + A    ++M +   P DI+TY+  L  LC     D AL ++ 
Sbjct: 433 TVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFK 492

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            + +     ++  YN +I    + G+     E W          DV TY  MI GL  CS
Sbjct: 493 YLQKSEMELNIFIYNTMIEGMCKAGKVG---EAWDLFCSLSIKPDVVTYNTMISGL--CS 547

Query: 427 K 427
           K
Sbjct: 548 K 548



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 19/290 (6%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +D+ L +L +  E  ++K    I   N ++D+LCK   V+ A  +   ++ K ++PN  T
Sbjct: 239 IDLALNLLNK-MEAARIKANVVI--FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVT 295

Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN L              + L  M++    P+  T+N  ID F K   + EA  L E M 
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMI 355

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            +      P   TY ++I     ++R++E   +   M++  CLP++ TY  ++ G C   
Sbjct: 356 QRSI---DPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCK 412

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           +VE+  +   EM  +G   + VTY   ++      + D A  ++ +M+       + TY+
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYS 472

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           +L+      G+ D A   +  + K     ++  Y  MI+G+    KV EA
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEA 522



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 141/331 (42%), Gaps = 29/331 (8%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYTE 167
           + YN +I+ L +    +   RL+ +ML+     N V        F     L+   K + E
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL--------- 217
            I+    P+    NLL++  C    +D A+ + K  V     PN  TYN L         
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-AK 273
              G++   EM Q G   +  TY T I  F +A     A  +F+ M +       PT   
Sbjct: 414 VEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSN----RVPTDIM 469

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+I++  L    +++    +  ++  S    ++  Y  ++EGMC AGKV EA+     +
Sbjct: 470 TYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL 529

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             K   PD+VTYN  +  LC  +   EA  L+ +M E G  P+  TYN LI       + 
Sbjct: 530 SIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDR 586

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
             + E   EM   G   D  T  ++ + L D
Sbjct: 587 AASAELIKEMRSSGFVGDASTISLVTNMLHD 617



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
           DY E +  R+ + +K + +  ++ G     +M++    P    +N  +    K       
Sbjct: 49  DYREILRNRLSDIIKVD-DAVDLFG-----DMVKSRPFPSIVEFNKLLSAVAKMNKFELV 102

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             L E M+T G    S    TY+I I    +  ++    ++L  M+  G  PD+ T   +
Sbjct: 103 ISLGEQMQTLGI---SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           L G C + ++ +A   +++M   GY PD  T+   +  L  +    EA+ L  +M++ GC
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P + TY  +++   + G+ D A    ++M+      +V  +  +ID L     VE A  
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVD 279

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
           L  E+  KG++     ++S +  L   G    A   LS+ + K  NP +    AL
Sbjct: 280 LFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNAL 334



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 3/251 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M  +G + D +TY+  I+ FC+   ++ A  +   M   G     P   T + ++   
Sbjct: 107 EQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGY---EPDIVTLSSLLNGY 163

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             + R+ +  +L+  M+  G  PD  T+  ++ G+ L  K  EA   +++M  +G  PD+
Sbjct: 164 CHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   + D AL L  +M       +V  +N +I    +    + A + + E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE 283

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M+ +G   +V TY  +I+ L +  +  +A  LL  ++ K +      F++ +      G 
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGK 343

Query: 463 LGAIHKLSDHM 473
           L    KL + M
Sbjct: 344 LVEAEKLHEEM 354


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 146/346 (42%), Gaps = 45/346 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+L+DA  + G VD A  +   + N+ +KP   TYN +              + 
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEV 249

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK------------------ 263
              M Q   APD  ++N  I  FC+   V EA   ++ M+ +                  
Sbjct: 250 FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSR 309

Query: 264 -------GSTISS-------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                  G+ +         P    Y ++I    +   M E   +   M+  GCLPDV T
Sbjct: 310 RGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVT 369

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +L G+C   ++ +A K L EM  +G  PD+ T+   +   C   N + AL+L+  ++
Sbjct: 370 YNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLL 429

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
                P V TYN LI      G+   A E W +M  R    +  TY ++ID   +  +VE
Sbjct: 430 RQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVE 489

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +A   L+E+V KG     R ++S +      G++    +    MR+
Sbjct: 490 DAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQ 535



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 143/302 (47%), Gaps = 17/302 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L+   E +     P++   N LL+ LCK   +  AE +   ++ + V P+  T+  L   
Sbjct: 352 LRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHG 411

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q  + +++    PD  TYN+ ID  C+   + +A +L++ M  +     
Sbjct: 412 YCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREIL-- 469

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+I+I +  +  ++E+ F  L  M+  G LP++ TY  +++G C +G V++  +
Sbjct: 470 -PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQ 528

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           FL++M      PD++T+N  +      +N   A  ++  M +    P   TYNM+I+ + 
Sbjct: 529 FLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFS 588

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           E G    A   +  M   G   D  TY  +I+G       ++A  L +E++++G   P  
Sbjct: 589 EQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFA-PDD 647

Query: 449 KF 450
           KF
Sbjct: 648 KF 649



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 173/386 (44%), Gaps = 34/386 (8%)

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV---DVLLMILK------- 163
           +P  ++L+I   + ++   + F     +LD+     +V VP    + LL +L        
Sbjct: 86  QPQVFDLLIRTYTQSRKPREAFEAFRLLLDH-----RVPVPASASNALLAVLSRAGWPHL 140

Query: 164 -QYTEKIKVKTQPEINA--LNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-- 217
            Q   ++ + +  E+NA  LN+++ + CK    D A+T+   ++ + V P+  T+N+L  
Sbjct: 141 AQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLID 200

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      +  ++ M   G  P   TYN+ +   CK R   +A ++F   RT     
Sbjct: 201 ARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVF---RTMDQCS 257

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            +P  +++ I+I    +   ++E       M +    PDV ++  ++      G+++ A 
Sbjct: 258 VAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAG 317

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
            +L EM   G  PD V Y   +   C   +  EALR+   M+  GC P V TYN L++  
Sbjct: 318 AYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGL 377

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            +      A +  +EM++RG   D+ T+  +I G       E A  L + ++ + L+   
Sbjct: 378 CKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDV 437

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHM 473
             ++S +  +   GDL   ++L D M
Sbjct: 438 VTYNSLIDGMCRKGDLAKANELWDDM 463



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 15/209 (7%)

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM---------------INSGCLPDVS 308
           G+  + P+    A    A     R  EC SLL  M               + S   P   
Sbjct: 29  GTIGARPSTAALAAAATAAAAAGRASECQSLLLRMSRRRGASRREIVSSLLASSPTPQPQ 88

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
            +  ++     + K  EA++    + +   P      N  L VL        A   Y  +
Sbjct: 89  VFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLV 148

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +      +  T N+++  Y +  E DGA     EM+KR    DV T+ V+ID  F    V
Sbjct: 149 LSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDV 208

Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           + A  L++ + N+GLK     ++S L  L
Sbjct: 209 DAAIALVDSMANRGLKPGIVTYNSVLKGL 237


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 131/269 (48%), Gaps = 25/269 (9%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
            P +   N+L+DALCK G V  A+++                      L  M++    PD
Sbjct: 266 NPNVYTYNILVDALCKEGKVKEAKSV----------------------LAVMLKACVKPD 303

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TY+T +D +     V +A  +F  M   G T   P   TY I+I    +N  ++E  +
Sbjct: 304 VITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT---PDVHTYTILINGFCKNKMVDEALN 360

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M     +P + TY  +++G+C +G++   +  ++EM ++G P +++TY+  +  LC
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLC 420

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            N + D A+ L+ +M + G  P+  T+ +L+    + G    A E + ++  +G   +V 
Sbjct: 421 KNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVY 480

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           TY VMIDG      +EEA  +L ++ + G
Sbjct: 481 TYNVMIDGHCKQGLLEEALTMLSKMEDNG 509



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 139/319 (43%), Gaps = 16/319 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           QP++  LN+L++  C  G + +  ++  ++ K    P+  T N L             + 
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++++  G   +  +Y T I+  CK      A  L + +  +   ++ P    Y+ +I 
Sbjct: 151 FHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGR---LTKPNVVMYSTIID 207

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +   + E + L   M   G   DV TY  ++ G C+ GK++EA   L EM  K   P
Sbjct: 208 ALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINP 267

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TYN  +  LC      EA  +   M++    P V TY+ L+  YF + E   A   +
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M   G   DV TY ++I+G      V+EA  L +E+  K +      + S +  L   
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 461 GDLGAIHKLSDHMRKFYNP 479
           G +  +  L D M     P
Sbjct: 388 GRIPYVWDLIDEMHDRGQP 406



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------------GMQTLEEMIQMG 229
           L++ +CK G    A  + +++  ++ KPN   Y+ +                  EM   G
Sbjct: 170 LINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            + D  TY+T I  FC    + EA  L   M  K  TI+ P   TY I++ AL +  +++
Sbjct: 230 ISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLK--TIN-PNVYTYNILVDALCKEGKVK 286

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  S+L  M+ +   PDV TY  +++G  L  +V++A      M   G  PD+ TY   +
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 346

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C NK  DEAL L+  M +    P + TY+ LI    + G     ++   EM  RG  
Sbjct: 347 NGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQP 406

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            +V TY  +IDGL     ++ A  L  ++ ++G++
Sbjct: 407 ANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIR 441



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 22/251 (8%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
            QP++  LN+L++  C  G + +  +I  ++ K    P+  T+  L             + 
Sbjct: 958  QPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALH 1017

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              ++++  G   +  +Y T I+  CK   + +     + +R     ++ P    Y  +I 
Sbjct: 1018 FHDKLLAQGFQLNQVSYGTLINGVCK---IGDTRAAIKLLRKIDGRLTKPDVVMYNTIID 1074

Query: 281  ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            AL ++  + + + L   M   G   DV TY  ++ G C+ GK++EA   L +M  K   P
Sbjct: 1075 ALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINP 1134

Query: 341  DIVTYNCFLKVLCDNKNG----DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
            ++ TYN  +  LC  K G    DE+L +  +M + GC  +  T+ ++IS  FE  E D  
Sbjct: 1135 NVRTYNILVDALC--KEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKV 1192

Query: 397  FETWHEMDKRG 407
             +  HEM  RG
Sbjct: 1193 EKLLHEMIARG 1203



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 3/220 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M+ M H P    +N  +D+F K +  + A  L   +  KG     P   T  I+I  
Sbjct: 47  FNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKG---IQPDLITLNILINC 103

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                ++   FS+L  ++  G  PD  T   +++G+CL G+V++A  F +++  +G+  +
Sbjct: 104 FCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLN 163

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            V+Y   +  +C   +   A++L  ++      P+V  Y+ +I    +      A+  + 
Sbjct: 164 QVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFS 223

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           EM  +G + DV TY  +I G     K++EA  LL E+V K
Sbjct: 224 EMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLK 263



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 5/218 (2%)

Query: 229  GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            G  PD FT N  I+ FC    +T    +   +  +G     P   T+  +I  L    ++
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGY---HPDTITFTTLINGLCLKGQV 1012

Query: 289  EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
             +       ++  G   +  +Y  ++ G+C  G    A K L ++  +   PD+V YN  
Sbjct: 1013 NKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTI 1072

Query: 349  LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
            +  LC ++   +A  L+  M   G    V TYN LI  +  +G+   A    ++M  +  
Sbjct: 1073 IDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTI 1132

Query: 409  AQDVDTYCVMIDGLFDCSK--VEEACFLLEEVVNKGLK 444
              +V TY +++D L    K  ++E+  +L ++ + G K
Sbjct: 1133 NPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCK 1170



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 1/179 (0%)

Query: 302  GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
            G  PD+ T   ++   C  G++   +  L ++  +GY PD +T+   +  LC     ++A
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 362  LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            L  + +++  G   +  +Y  LI+   ++G+   A +   ++D R    DV  Y  +ID 
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDA 1075

Query: 422  LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNP 479
            L     V +A  L  E+  KG+      +++ +    ++G L  AI  L+  + K  NP
Sbjct: 1076 LCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINP 1134



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 27/167 (16%)

Query: 173  TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
            T+P++   N ++DALCK  LV  A  +                        EM   G + 
Sbjct: 1062 TKPDVVMYNTIIDALCKHQLVSKAYGL----------------------FFEMNVKGISA 1099

Query: 233  DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ--NDRMEE 290
            D  TYNT I  FC    + EA  L   M  K  TI +P  +TY I++ AL +   D ++E
Sbjct: 1100 DVVTYNTLIYGFCIVGKLKEAIGLLNKMVLK--TI-NPNVRTYNILVDALCKEGKDLLDE 1156

Query: 291  CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
              S+L  M ++GC  +  T++ ++  +    + ++  K L EM  +G
Sbjct: 1157 SLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARG 1203



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%)

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P I+ +N  L      K+   A+ L  R+   G  P + T N+LI+ +  +G+    F
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               ++ KRG   D  T   +I GL    +V++A    ++++ +G +L    + + +  +
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGV 174

Query: 458 SVIGDLGAIHKL 469
             IGD  A  KL
Sbjct: 175 CKIGDTRAAIKL 186



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%)

Query: 361  ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
            A+ L  R+   G  P + T N+LI+ +  +G+    F    ++ KRG   D  T+  +I+
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 421  GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            GL    +V +A    ++++ +G +L    + + +  +  IGD  A  KL
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKL 1053


>gi|449439559|ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 646

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 170/375 (45%), Gaps = 39/375 (10%)

Query: 110 NYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR------NNKVFVPVDVLLMI 161
           NY  EP  L Y+++I+     +       L+C++ + MK       NN  F  +   L +
Sbjct: 192 NYV-EPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCL 250

Query: 162 LKQYTEKIKV-------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
           +  + E   +       ++ PE  A   ++D+LCK      A  I   ++ K + P   +
Sbjct: 251 VGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLS 310

Query: 214 YN--ILGM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           YN  I G+          Q L E ++ G++P   TY   ++  CK     +A ++ + M 
Sbjct: 311 YNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMI 370

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
            K         + Y I + A+   +   E  + L  M+ + C PDV T   V++G C  G
Sbjct: 371 HKQGV---DRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVG 427

Query: 322 KVEEAYKFLEEM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALR-LYGRMIEVGCWPSVQT 379
            +EEA K L +M G K   PD VT+   +  L +     E+L  LY  M E G  P V T
Sbjct: 428 SIEEALKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVIT 487

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN  I   F+L + + A  T+  M + G   D  TY V+IDGL DC+++EE     +++V
Sbjct: 488 YNATIRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIV 547

Query: 440 NKGLKLPYRKFDSYL 454
                 P +  DS++
Sbjct: 548 -----WPSKIHDSFV 557



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 27/260 (10%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           +L    E ++   QP++  LN ++   CK G ++ A                      ++
Sbjct: 397 LLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEA----------------------LK 434

Query: 221 TLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTYAIM 278
            L +MI      PD+ T+ T I        + E+ D L++ M  KG     P   TY   
Sbjct: 435 VLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIV---PGVITYNAT 491

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  +  +  +    M+ +G   D +TY  V++G+C   ++EE  +F +++     
Sbjct: 492 IRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIVWPSK 551

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             D   Y+  LK LC +   +EA      + + G  P++  YN++I+   +LG    A+ 
Sbjct: 552 IHDSFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYR 611

Query: 399 TWHEMDKRGCAQDVDTYCVM 418
              EM K G A D  T+ ++
Sbjct: 612 LVKEMRKNGLAPDAVTWRIL 631



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 33/264 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N L+D  C   L + A  +                      L +M   GH P+ 
Sbjct: 126 PSIVNYNRLIDQFCSFSLPNVAHRV----------------------LFDMKSRGHCPNV 163

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            +Y   ID +C+   V+ A  LF+ M   G+ +  P + TY+++I   +     E   +L
Sbjct: 164 VSYTALIDGYCRVCNVSAAEKLFDEM--PGNYV-EPNSLTYSVLINGFLYKRDFETGKAL 220

Query: 295 LGHMIN--SGCLP---DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           + ++     G L    + + +  +++ +CL G   E +   E+M      P+   Y   +
Sbjct: 221 ICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMI 280

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K    A R+   M + G  P + +YN +I    + G    A++   E  + G +
Sbjct: 281 DSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGVEFGYS 340

Query: 410 QDVDTYCVMIDGL---FDCSKVEE 430
               TY V+++GL    D  K +E
Sbjct: 341 PSEHTYKVLLEGLCKELDTQKAKE 364



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 313 VLEGMCLAGKVEEAY-KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           V+ G+C A +  EA+ +F+  + ++  P D  T N  +  L D ++    LRL   + + 
Sbjct: 62  VIHGLCDAHRFHEAHCRFMLSIASRCVP-DERTCNVLIARLLDYRSPYCTLRLLVCLFDA 120

Query: 372 G--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
                PS+  YN LI  +     P+ A     +M  RG   +V +Y  +IDG      V 
Sbjct: 121 KPEFVPSIVNYNRLIDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVS 180

Query: 430 EACFLLEEV 438
            A  L +E+
Sbjct: 181 AAEKLFDEM 189



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 10/182 (5%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
            +Q L+ +   G+        + I   C A    EA     FM +  S    P  +T  +
Sbjct: 40  ALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAH--CRFMLSIASR-CVPDERTCNV 96

Query: 278 MIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           +I  L+          LL  + ++    +P +  Y  +++  C       A++ L +M +
Sbjct: 97  LIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVAHRVLFDMKS 156

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY-----FEL 390
           +G+ P++V+Y   +   C   N   A +L+  M      P+  TY++LI+ +     FE 
Sbjct: 157 RGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFET 216

Query: 391 GE 392
           G+
Sbjct: 217 GK 218


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 189/481 (39%), Gaps = 82/481 (17%)

Query: 42  DESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQ-RFQFEEKIAFR 100
           +  S  V D  +L E      +    +E  L  L   L+   V  VL+ + + + + AF 
Sbjct: 59  ESRSRLVRDTCRLLEL---RESWSPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFE 115

Query: 101 FFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM 160
           FF WA  Q  Y H P    LM+     +  +A + R    +L  M+++            
Sbjct: 116 FFRWADRQWRYRHAPEFAQLML-----SYSRAGKLRSAMRVLHLMQKDG----------- 159

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-- 217
                         P+I+  N+ ++ L   G VD A    +R++   V+P+  TYN L  
Sbjct: 160 ------------CAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIK 207

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                      M+ +  M+Q G  PD  +Y T +   CK + V E   L + MR      
Sbjct: 208 GLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLF 267

Query: 268 SSPTAKTYAIMIVALVQ-----------------------------------NDRMEECF 292
             P   TY ++I  L +                                   N RM E  
Sbjct: 268 --PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAK 325

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            ++G MI+ GC PDV TY  V++G C  G++++A K ++ M      P+ VT+   L  L
Sbjct: 326 EIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGL 385

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C      EA  L  +  E    PS  TY++++  +   G+   + +   +M ++G     
Sbjct: 386 CKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTT 445

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472
               ++I  L    K  EA   +E+  +KG  +    F + +   S  GDL +   L D 
Sbjct: 446 VEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDD 505

Query: 473 M 473
           M
Sbjct: 506 M 506



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 36/255 (14%)

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           FEF R          A  +A ++++  +  ++     +L  M   GC PD+S     +  
Sbjct: 114 FEFFRWADRQWRYRHAPEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNV 173

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC--- 373
           + +AG+V++A +F E M   G  PD+ TYNC +K LC  +   +A+ + G M++ GC   
Sbjct: 174 LVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPD 233

Query: 374 ---------------------------------WPSVQTYNMLISMYFELGEPDGAFETW 400
                                            +P   TYN+LI    + G  D A E  
Sbjct: 234 KISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFL 293

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            E + +    D   Y  ++       ++ EA  ++ E+++KG +     + + +     I
Sbjct: 294 RESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRI 353

Query: 461 GDLGAIHKLSDHMRK 475
           G+L    K+  HM K
Sbjct: 354 GELDQARKMMKHMYK 368



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 110/292 (37%), Gaps = 48/292 (16%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P       LL+ LCK G    A E + K  +    P+  TY+++               
Sbjct: 372 KPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD 431

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            + +M+Q G  P     N  I   CK     EA D  E  ++KG TI+            
Sbjct: 432 VVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS 491

Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   TY +++ AL +  R++E   L+  M+N G LP   
Sbjct: 492 RQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPV 551

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY+ V+   C  G +E+    LE+M  +        YN  ++ LC     +EA  L  ++
Sbjct: 552 TYRTVIHRYCEKGNLEDLLNLLEKMLARQEMKS--AYNQVVEKLCAFGKLNEAYSLLYKI 609

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           +        QT ++L+  +   G    A+     M +R    DV   C  +D
Sbjct: 610 LRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDV-KLCQKVD 660


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 173/396 (43%), Gaps = 41/396 (10%)

Query: 87  VLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY---------KAKQFRL 137
           VL   +     A RFF W   Q N+     A+  ++DIL+   +         KA + ++
Sbjct: 57  VLNSVKHRPLTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKV 116

Query: 138 VCSMLDYM-----KRNNKVFVPV-DVLLMILKQ----------YTEKIKVKTQPEINALN 181
              +LD +      RN++V V + D+L+ +  +          + + +     P++   N
Sbjct: 117 DGGVLDVLVGIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCN 176

Query: 182 LLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
            +L  L    +V+  E +    +K +++P   T+N +             ++ L+ M   
Sbjct: 177 RVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMF 236

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P++ +YN  ++          A +L E M   G  +S   A TY  +I    + +  
Sbjct: 237 GCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVS---AHTYNPLIRGFCKKEMF 293

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           EE   L   M+  G LP V TY  ++  +C  G+V +A ++L+ M N+   PD+V+YN  
Sbjct: 294 EEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTL 353

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +       N  EAL L+  +      PSV TYN LI      G  D A     +M K G 
Sbjct: 354 IYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGL 413

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             DV T+ +++ G      +  A  L +E++++GLK
Sbjct: 414 CPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLK 449



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 119/261 (45%), Gaps = 16/261 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPN--ANTYNILGMQTL--------- 222
           P++    +L+   C+ G +  A+ +   + ++ +KP+  A T  I+G   L         
Sbjct: 415 PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGM 474

Query: 223 -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM   G  PD  TYN  I+  CK     +A +L + MR +G     P   TY  +I A
Sbjct: 475 KEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIV---PDHVTYTSIIHA 531

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
            + +  + +   +   M+  G  P V TY  ++    + G+++ A K+ +EM +KG  P+
Sbjct: 532 HLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPN 591

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  LC     D A  L+  M   G  P+  TY +LI+    L     A + + 
Sbjct: 592 VITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYK 651

Query: 402 EMDKRGCAQDVDTYCVMIDGL 422
           +M  R    D  T+  ++  L
Sbjct: 652 DMLDREIKPDSCTHSALMKHL 672



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 119/282 (42%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N ++ +LC+ G V  A      + N+ + P+  +YN L             +  
Sbjct: 310 PTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLL 369

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             E+      P   TYNT ID  C+   +  A  + + M   G     P   T+ I++  
Sbjct: 370 FSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLC---PDVVTFTILVRG 426

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             Q   +     L   M++ G  PD   Y   + G    G   +A+   EEM  +G+PPD
Sbjct: 427 FCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPD 486

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TYN  +  LC   N D+A  L  +M   G  P   TY  +I  +   G    A E + 
Sbjct: 487 LITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFS 546

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +M K+G    V TY V+I       +++ A    +E+ +KG+
Sbjct: 547 DMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV 588



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQT 221
           P +   N L+D  C+ G +D A+ +    +K+ + P+  T+ IL              + 
Sbjct: 380 PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKEL 439

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  PD   Y T I    K    ++A  + E M+ +G     P   TY ++I  
Sbjct: 440 FDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGF---PPDLITYNVLING 496

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +    ++   L+  M   G +PD  TY  ++    ++G + +A +   +M  KG  P 
Sbjct: 497 LCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPS 556

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +         D A + +  M + G  P+V TYN LI    +    D A+  + 
Sbjct: 557 VVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFA 616

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM+ +G + +  TY ++I+   +    ++A  L ++++++ +K
Sbjct: 617 EMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIK 659



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 16/307 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N L+   CK  + + A  + + +  +   P   TYN +              + L+ M+ 
Sbjct: 281 NPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVN 340

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  +YNT I  + +     EA  LF  +R+K      P+  TY  +I    +   
Sbjct: 341 EDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLV---PSVVTYNTLIDGGCRTGN 397

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ++    +   MI  G  PDV T+  ++ G C  G +  A +  +EM ++G  PD + Y  
Sbjct: 398 LDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTT 457

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +       N  +A  +   M   G  P + TYN+LI+   +LG  D A E   +M   G
Sbjct: 458 RIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG 517

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              D  TY  +I        + +A  +  +++ KG+      +   +   +V G L    
Sbjct: 518 IVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAK 577

Query: 468 KLSDHMR 474
           K  D M+
Sbjct: 578 KYFDEMQ 584



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 6/209 (2%)

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM---CLAGKVE 324
           S  + K   ++I    +   +E+C  +   M+N+G LPDV     VL+ +    +  +VE
Sbjct: 133 SEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVE 192

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           E Y  + +   +   P IVT+N  +   C       A+ +   M   GC P+  +YN+L+
Sbjct: 193 EVYSVMIKCQIR---PTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLV 249

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +     GE D A E   +M   G      TY  +I G       EEA  L  E++ +G  
Sbjct: 250 NGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGAL 309

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +++ +  L  +G +    +  D M
Sbjct: 310 PTVVTYNTIMYSLCRLGRVSDARRYLDVM 338



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 16/203 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN-------ILGM-----QT 221
           P++   N+L++ LCK G  D A  + ++++   + P+  TY        I G+     + 
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEV 544

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +M++ G  P   TY   I ++     +  A   F+ M+ KG    SP   TY  +I  
Sbjct: 545 FSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV---SPNVITYNALIYG 601

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L + + M+  ++L   M + G  P+  TY  ++         ++A K  ++M ++   PD
Sbjct: 602 LCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPD 661

Query: 342 IVTYNCFLKVLCDNKNGDEALRL 364
             T++  +K L  +      LRL
Sbjct: 662 SCTHSALMKHLSKDYKLLAVLRL 684


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 139/277 (50%), Gaps = 18/277 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM--------------QTLEEMI 226
            +L+  LCK G ++ A +I +  +N  + + +T+    M                L++M 
Sbjct: 373 GVLVHGLCKNGYLNKALSILEEAENG-RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMT 431

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           + G  P+ +  N  I+ F +A  + +A   F  M +KG     PT  TY  +I  L + +
Sbjct: 432 KHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCF---PTVVTYNTLINGLSKAE 488

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           R  E ++L+  M+  G  P++ TY  ++ G+C   K++ A     +   KG+ PD+  +N
Sbjct: 489 RFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 548

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC +   ++AL+LY  M +  C P++ T+N L+  ++++ + + A + W  + + 
Sbjct: 549 IIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 608

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           G   D+ +Y + + GL  C ++ +A   L + V++G+
Sbjct: 609 GLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGV 645



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 149/316 (47%), Gaps = 23/316 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+  L +   VD A +I + +  K    ++ TY +L             +  LEE   
Sbjct: 338 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAEN 397

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
                D F Y++ I+  C+   + E A + + M   G     P       +I   V+  +
Sbjct: 398 GRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGC---KPNPYVCNAVINGFVRASK 454

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+     G+M++ GC P V TY  ++ G+  A +  EAY  ++EM  KG+ P+++TY+ 
Sbjct: 455 LEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSL 514

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC  K  D AL L+ + +E G  P V+ +N++I      G+ + A + + EM +R 
Sbjct: 515 LMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRN 574

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
           C  ++ T+  +++G +     E A  + + ++  GL+       SY + L     L + H
Sbjct: 575 CVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQ---PDIISYNITLK---GLCSCH 628

Query: 468 KLSDHMRKFYNPVIAR 483
           ++SD +  F N  + R
Sbjct: 629 RISDAV-GFLNDAVDR 643



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 166/381 (43%), Gaps = 41/381 (10%)

Query: 92  QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM---------- 141
           QF++      +MW      ++ +  +Y  +I+ L+   Y +   +L   M          
Sbjct: 139 QFDKAKELLNWMWG---QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVA 195

Query: 142 -----LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA 196
                +D   +   +    ++   +LK  +        P I + N++++ LCKCG  D +
Sbjct: 196 CYNILIDGFFKKGDILNASEIWERLLKGPS------VYPNIPSYNVMINGLCKCGKFDES 249

Query: 197 ETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDT 243
             I  R+K N+   +  TY+ L              +  +EM + G +PD   YNT ++ 
Sbjct: 250 FEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNG 309

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           + +A  + E  +L++ M  +G      T  +Y I+I  L +N +++E  S+   +    C
Sbjct: 310 YLRAGRIEECLELWKVMEKEGCR----TVVSYNILIRGLFENAKVDEAISIWELLPEKDC 365

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
             D  TY  ++ G+C  G + +A   LEE  N     D   Y+  +  LC     DE   
Sbjct: 366 CADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAG 425

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +  +M + GC P+    N +I+ +    + + A   +  M  +GC   V TY  +I+GL 
Sbjct: 426 VLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLS 485

Query: 424 DCSKVEEACFLLEEVVNKGLK 444
              +  EA  L++E++ KG K
Sbjct: 486 KAERFSEAYALVKEMLQKGWK 506



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 167/415 (40%), Gaps = 69/415 (16%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQF---RLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
            Y+H P  ++ ++  L   K  A  +    +    LD  +R +++F              
Sbjct: 38  GYSHTPYVFHHILKRLFDPKLVAHAYAKNSMPDQALDIFQRMHEIF-------------- 83

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
                  QP I + N LL+AL +    D AE+     +   + PN  TYNIL        
Sbjct: 84  -----GCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKK 138

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---- 269
                 + L  M   G +PD F+Y T I++  K   +++A  LF+ M  +G T       
Sbjct: 139 QFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYN 198

Query: 270 -----------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                        P   +Y +MI  L +  + +E F +   M  
Sbjct: 199 ILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKK 258

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           +    D+ TY  ++ G+C +G ++ A +  +EM   G  PD+V YN  L         +E
Sbjct: 259 NERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 318

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
            L L+  M + GC  +V +YN+LI   FE  + D A   W  + ++ C  D  TY V++ 
Sbjct: 319 CLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVH 377

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           GL     + +A  +LEE  N    L    + S +  L   G L  +  + D M K
Sbjct: 378 GLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK 432



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 201 KRVKNKVKPNANTYNILGM-QTLEEMIQMGHAPDNFTY--------NTAIDTFCKARMVT 251
           KRV   +K   N ++ L +  ++       H P  F +              + K  M  
Sbjct: 11  KRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAYAKNSMPD 70

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A D+F+ M         P  ++Y  ++ AL+++++ +E  S   +    G  P++ TY 
Sbjct: 71  QALDIFQRMHEIFGC--QPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 128

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            +++  C   + ++A + L  M  +G+ PD+ +Y   +  L  N    +AL+L+  M E 
Sbjct: 129 ILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 188

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA-QDVDTYCVMIDGLFDCSKVEE 430
           G  P V  YN+LI  +F+ G+   A E W  + K      ++ +Y VMI+GL  C K +E
Sbjct: 189 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 248

Query: 431 A 431
           +
Sbjct: 249 S 249



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 51/260 (19%)

Query: 179 ALNLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
           A + +++ LC+ G +D  A  + +  K+  KPN    N +             ++    M
Sbjct: 406 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNM 465

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           +  G  P   TYNT I+   KA   +EA  L + M  KG     P   TY++++  L Q 
Sbjct: 466 VSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGW---KPNMITYSLLMNGLCQG 522

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--------- 336
            +++   +L    +  G  PDV  +  ++ G+C +GKVE+A +   EM  +         
Sbjct: 523 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTH 582

Query: 337 --------------------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
                                     G  PDI++YN  LK LC      +A+      ++
Sbjct: 583 NTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVD 642

Query: 371 VGCWPSVQTYNMLISMYFEL 390
            G  P+  T+N+L+  Y  L
Sbjct: 643 RGVLPTAITWNILVQGYLAL 662



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 42/272 (15%)

Query: 78  PLTTDSVV-GVLQRFQFEEKIAFRFFMWAGHQDNYAHEP--LAYNLMIDILSSTKYKAKQ 134
           P   ++V+ G ++  + E+  A RFF   G+  +    P  + YN +I+ LS  +  ++ 
Sbjct: 439 PYVCNAVINGFVRASKLED--ALRFF---GNMVSKGCFPTVVTYNTLINGLSKAERFSEA 493

Query: 135 FRLVCSMLDYMKRNNKVFVPV--------DVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
           + LV  ML    + N +   +          L M L  + + ++   +P++   N+++  
Sbjct: 494 YALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 553

Query: 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
           LC  G V+ A                      +Q   EM Q    P+  T+NT ++ F K
Sbjct: 554 LCSSGKVEDA----------------------LQLYSEMKQRNCVPNLVTHNTLMEGFYK 591

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
            R    A+ +++ +   G     P   +Y I +  L    R+ +    L   ++ G LP 
Sbjct: 592 VRDFERASKIWDHILQYG---LQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPT 648

Query: 307 VSTYKEVLEG-MCLAGKVEEAYKFLEEMGNKG 337
             T+  +++G + L G +E  +      GN G
Sbjct: 649 AITWNILVQGYLALKGYMEPVFVPASMKGNPG 680


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 144/312 (46%), Gaps = 17/312 (5%)

Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPN 210
           F    ++L  L+   E +     P++   N LL+ LCK   +  AE +   +K + V P+
Sbjct: 344 FCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPD 403

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             T+  L             +Q  + +      PD  TYNT ID  C+   + +A +L++
Sbjct: 404 LCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWD 463

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M ++      P   TY+I+I +  +  +++  F+ L  M+N G +P++ TY  +++G C
Sbjct: 464 DMHSREIF---PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYC 520

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            +G V +  +FL +M +    PD++TYN  +          EA  L   M      P   
Sbjct: 521 RSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAV 580

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TYNM+IS +   G    A   + +M  RG   D  TY  MI+G       +++  L +E+
Sbjct: 581 TYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEM 640

Query: 439 VNKGLKLPYRKF 450
           + KGL  P  KF
Sbjct: 641 LQKGLA-PDDKF 651



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 45/314 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N+++DA  + G V+ A  +   + +K +KP   TYN +              + 
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREV 251

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------------ 269
              M   G APD  ++N  I  FC+A  + EA   ++ MR +  T               
Sbjct: 252 FRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTR 311

Query: 270 --------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                               P    Y ++I    +   M E   +   M+  GCLPDV T
Sbjct: 312 RGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVT 371

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +L G+C   ++ +A + L EM  +G PPD+ T+   +   C + N ++AL+ +  + 
Sbjct: 372 YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTIS 431

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           +    P + TYN LI      G+   A E W +M  R    +  TY ++ID   +  +V+
Sbjct: 432 DQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVD 491

Query: 430 EACFLLEEVVNKGL 443
            A   L+E+VNKG+
Sbjct: 492 NAFAFLDEMVNKGI 505



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 122/277 (44%), Gaps = 38/277 (13%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD  T+N  +D   +A  V  A  L + M +KG     P   TY  ++  L++N R ++ 
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGI---KPGLVTYNSVLKGLLRNGRWDKA 248

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             +   M   G  PDV ++  ++ G C AG++EEA +F +EM  +   PD+V+++C + +
Sbjct: 249 REVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGL 308

Query: 352 LCDNKNGD-----------------------------------EALRLYGRMIEVGCWPS 376
                  D                                   EALR+   M+  GC P 
Sbjct: 309 FTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPD 368

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TYN L++   +      A E  +EM +RG   D+ T+  +I G      +E+A    +
Sbjct: 369 VVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFD 428

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            + ++ L+     +++ +  +   GDLG  ++L D M
Sbjct: 429 TISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDM 465



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 5/191 (2%)

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
           AD +  + +  S +++    T  IM+ +  +  +  E  +++  M      PDV T+  +
Sbjct: 144 ADAYRLVLSSNSEVNT---YTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVM 200

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           ++    AG VE A   ++ M +KG  P +VTYN  LK L  N   D+A  ++  M   G 
Sbjct: 201 VDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGV 260

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD-CSKVEEAC 432
            P V+++NMLI  +   GE + A   + EM  R    DV ++  +I GLF    +++ A 
Sbjct: 261 APDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLI-GLFTRRGEMDHAA 319

Query: 433 FLLEEVVNKGL 443
             L E+   GL
Sbjct: 320 EYLREMREFGL 330



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 306 DVSTY--KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +V+TY    ++   C   +  E    + EM  +   PD+VT+N  +       + + A+ 
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           L   M+  G  P + TYN ++      G  D A E +  MD  G A DV ++ ++I G  
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
              ++EEA    +E+  + +      F   +   +  G++    +    MR+F
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREF 328


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 182/449 (40%), Gaps = 77/449 (17%)

Query: 67  NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
            +EK  D    P+    V  VL   + + K+AF+FF W+  ++ + H   +Y ++  IL 
Sbjct: 97  GLEKLFDLTLAPIW---VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILF 153

Query: 127 STK--YKAKQF-------RLVCSMLDYMKRNNKVFVP----VDVLLMIL----------- 162
             +  Y A          +  C + D +     V VP     D L  +L           
Sbjct: 154 CARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQ 213

Query: 163 ----------------------------------KQYTEKIKVKTQPEINALNLLLDALC 188
                                             + + + I    +P +   N+++D +C
Sbjct: 214 CFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMC 273

Query: 189 KCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQTL----------EEMIQMGHAPDNF 235
           K G V+ A  + + +K + + P+  TYN  I G   +          EEM  M   PD  
Sbjct: 274 KEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 333

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TYN  I+ FCK   +    + +  M+  G     P   +Y+ ++ A  +   M++     
Sbjct: 334 TYNALINCFCKFGKLPIGLEFYREMKGNGL---KPNVVSYSTLVDAFCKEGMMQQAIKFY 390

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M   G +P+  TY  +++  C  G + +A++   EM   G   ++VTY   +  LCD 
Sbjct: 391 VDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 450

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
           +   EA  L+G+M   G  P++ +YN LI  + +    D A E  +E+  RG   D+  Y
Sbjct: 451 ERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLY 510

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              I GL    K+E A  ++ E+   G+K
Sbjct: 511 GTFIWGLCSLEKIEAAKVVMNEMKECGIK 539



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 181/411 (44%), Gaps = 45/411 (10%)

Query: 40  VFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI-- 97
           VFD     + D+  L EAI      +  M++      V   T S  G+L RF    K   
Sbjct: 194 VFDALFSVLIDLGMLEEAI----QCFSKMKR----FRVFPKTRSCNGLLHRFAKLGKTDD 245

Query: 98  AFRFF---MWAGHQDNYAHEPLAYNLMIDIL--------SSTKYKAKQFRLVCSMLDYMK 146
             RFF   + AG +         YN+MID +        +   ++  +FR +    D + 
Sbjct: 246 VKRFFKDMIGAGARPTV----FTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVP--DTVT 299

Query: 147 RNNKV--FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
            N+ +  F  V  L   +  + E   +  +P++   N L++  CK G +       + +K
Sbjct: 300 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 359

Query: 205 -NKVKPNANTYNIL-------GM--QTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVT 251
            N +KPN  +Y+ L       GM  Q ++   +M ++G  P+ +TY + ID  CK   ++
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLS 419

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           +A  L   M   G   +     TY  +I  L   +RM+E   L G M  +G +P++++Y 
Sbjct: 420 DAFRLGNEMLQVGVEWN---VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYN 476

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++ G   A  ++ A + L E+  +G  PD++ Y  F+  LC  +  + A  +   M E 
Sbjct: 477 ALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKEC 536

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           G   +   Y  L+  YF+ G P        EM +      V T+CV+IDGL
Sbjct: 537 GIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 155/402 (38%), Gaps = 60/402 (14%)

Query: 114 EPLAYNLMID------ILSSTKYKAKQFRLVCSMLDYMKRNNKV--FVPVDVLLMILKQY 165
           + + YN MID       L  T    ++ + +C   D +  N  +  F     L + L+ Y
Sbjct: 296 DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFY 355

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------- 217
            E      +P + + + L+DA CK G++  A      ++   + PN  TY  L       
Sbjct: 356 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 415

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                  +   EM+Q+G   +  TY   ID  C A  + EA +LF  M T G     P  
Sbjct: 416 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVI---PNL 472

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            +Y  +I   V+   M+    LL  +   G  PD+  Y   + G+C   K+E A   + E
Sbjct: 473 ASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNE 532

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM------ 386
           M   G   + + Y   +     + N  E L L   M E+    +V T+ +LI        
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592

Query: 387 ------YF-----ELG-------------------EPDGAFETWHEMDKRGCAQDVDTYC 416
                 YF     + G                   + + A   + +M ++G   D   Y 
Sbjct: 593 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 652

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            ++DG F    V EA  L +++   G+KL    + S +  LS
Sbjct: 653 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLS 694



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 119/291 (40%), Gaps = 17/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
           E ++V  +  +     L+D LC    +  AE +  ++    V PN  +YN L        
Sbjct: 427 EMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAK 486

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                ++ L E+   G  PD   Y T I   C    +  A  +   M+  G   +S    
Sbjct: 487 NMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI-- 544

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  ++ A  ++    E   LL  M        V T+  +++G+C    V +A  +   +
Sbjct: 545 -YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRI 603

Query: 334 GNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
            N  G   +   +   +  LC +   + A  L+ +M++ G  P    Y  L+   F+ G 
Sbjct: 604 SNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGN 663

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              A     +M + G   D+  Y  ++ GL  C+++++A   LEE++ +G+
Sbjct: 664 VLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGI 714



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 50/218 (22%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
           +P++      +  LC    ++ A+ +   +K   +K N+  Y  L            G+ 
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLH 563

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM ++       T+   ID  CK ++V++A D F   R          A  +  MI 
Sbjct: 564 LLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFN--RISNDFGLQANAAIFTAMID 621

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY------------- 327
            L +++++E   +L   M+  G +PD + Y  +++G    G V EA              
Sbjct: 622 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 681

Query: 328 ----------------------KFLEEMGNKGYPPDIV 343
                                  FLEEM  +G  PD V
Sbjct: 682 DLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 719


>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 903

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 17/296 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-------VKPNA--N 212
           L  Y + I  +  P++   +++++A C+CG VD A    K + N        V  N+  N
Sbjct: 210 LHVYDQMISFEVSPDVFTCSIVVNAYCRCGKVDKAMAFAKEMDNSLGLELNVVTCNSLIN 269

Query: 213 TYNILG-----MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
            Y ++G      + L  M + G + +  T+ + I ++CK  ++ EA  +FE +  K    
Sbjct: 270 GYAMIGDVEGMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLV- 328

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
             P    + ++I    +N R+ +   +  +MI  G   + +    ++ G C +G++ EA 
Sbjct: 329 --PDQHMHGVLIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAE 386

Query: 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
           + L  M +    PD  TYN  +   C   + DEAL+L GRM +    P+V TYN+L+  Y
Sbjct: 387 QILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGY 446

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             +G        W  M KRG   +  +   +++ LF     +EA  L E V+ +GL
Sbjct: 447 SRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGL 502



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 25/299 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P+ +  N L+D  C+ G VD A  +C R+ + +V P   TYNIL             + 
Sbjct: 398 KPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 457

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             + M++ G   +  + +T ++   K     EA  L+E +  +G    + T     +MI 
Sbjct: 458 LWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLN---VMIS 514

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L + +++ E   +L ++    C PDV TY+ +  G    G ++EA+   + M  KG  P
Sbjct: 515 GLCKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDFMEKKGIFP 574

Query: 341 DIVTYNCFL----KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
            I  YN  +    K    NK  D  + L  R    G  P+V TY  LI+ +  +G  D A
Sbjct: 575 TIEMYNTLISGAFKYKHLNKVADLVIELRAR----GLTPTVATYGALITGWCNIGMIDKA 630

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYL 454
           + T  EM ++G   +V+    + + LF   K +EAC LL+++V+  L LP Y+    +L
Sbjct: 631 YATCFEMIEKGITLNVNICSKIANSLFRLDKFDEACLLLQKIVDFDLLLPGYQSLKEFL 689



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 58/250 (23%)

Query: 201 KRVKNKVKPNANTYNILGMQTLEEMIQMGH-----APDNFTYNTAIDTFCKARMVTEAAD 255
           + +K  ++P+A T   L  Q + E ++         P+N  YN AI   CKA  +T+A  
Sbjct: 683 QSLKEFLEPSATT--CLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLTDAQK 740

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           LF                        L+ +DR                +PD  TY  ++ 
Sbjct: 741 LFS----------------------DLLSSDRF---------------IPDEYTYTILIH 763

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G  + G + +A+   +EM  KG  P+IVTYN  +K LC   N D A RL  ++ + G  P
Sbjct: 764 GCAIDGDINKAFNLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLRKLPQKGTTP 823

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +  TYN LI    + G+   A     +M ++G          ++ G +    V++     
Sbjct: 824 NAITYNTLIDGLIKSGDVAEAMRLKEKMIEKG----------LVRGSYKQGDVDKP---- 869

Query: 436 EEVVNKGLKL 445
           +EV++ G+KL
Sbjct: 870 KEVLDPGVKL 879



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 136/347 (39%), Gaps = 55/347 (15%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILG-----MQTLEE-------M 225
            LN+++  LCK   V+ A+ I   V   + KP+  TY  L      +  L+E       M
Sbjct: 508 TLNVMISGLCKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDFM 567

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            + G  P    YNT I    K + + + ADL   +R +G T   PT  TY  +I      
Sbjct: 568 EKKGIFPTIEMYNTLISGAFKYKHLNKVADLVIELRARGLT---PTVATYGALITGWCNI 624

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN-----KGYP- 339
             +++ ++    MI  G   +V+   ++   +    K +EA   L+++ +      GY  
Sbjct: 625 GMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKFDEACLLLQKIVDFDLLLPGYQS 684

Query: 340 --------------------------------PDIVTYNCFLKVLCDNKNGDEALRLYGR 367
                                           P+ + YN  +  LC      +A +L+  
Sbjct: 685 LKEFLEPSATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLTDAQKLFSD 744

Query: 368 MIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           ++    + P   TY +LI      G+ + AF    EM  +G   ++ TY  +I GL    
Sbjct: 745 LLSSDRFIPDEYTYTILIHGCAIDGDINKAFNLRDEMALKGIIPNIVTYNALIKGLCKLG 804

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            V+ A  LL ++  KG       +++ +  L   GD+    +L + M
Sbjct: 805 NVDRAQRLLRKLPQKGTTPNAITYNTLIDGLIKSGDVAEAMRLKEKM 851



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 23/155 (14%)

Query: 181 NLLLDALCKCGLVDYAETICKRV--KNKVKPNANTYNIL------------GMQTLEEMI 226
           N+ +  LCK G +  A+ +   +   ++  P+  TY IL                 +EM 
Sbjct: 723 NVAIAGLCKAGKLTDAQKLFSDLLSSDRFIPDEYTYTILIHGCAIDGDINKAFNLRDEMA 782

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  P+  TYN  I   CK   V  A  L   +  KG+T   P A TY  +I  L+++ 
Sbjct: 783 LKGIIPNIVTYNALIKGLCKLGNVDRAQRLLRKLPQKGTT---PNAITYNTLIDGLIKSG 839

Query: 287 RMEECFSLLGHMINSGCL------PDVSTYKEVLE 315
            + E   L   MI  G +       DV   KEVL+
Sbjct: 840 DVAEAMRLKEKMIEKGLVRGSYKQGDVDKPKEVLD 874


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 3/249 (1%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G+ PD  TY T I+  CK      AA LF+ M   G     P   TY+ +I +L +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGC---QPDVVTYSTIIDSLCK 57

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           + R+ E   +  +M   G  P++ TY  +++G+C   +  EA   L EM +    P+IVT
Sbjct: 58  DRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           ++  + + C   N  EA  +   M E+G  P+V TY+ L++ Y    E   A + +  M 
Sbjct: 118 FSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMI 177

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
            +GC  DV +Y ++I+G     ++ EA  L  E++++GL      +++ +  L  +G L 
Sbjct: 178 TKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLR 237

Query: 465 AIHKLSDHM 473
             H L  +M
Sbjct: 238 EAHDLFKNM 246



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 30/250 (12%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-------- 217
           E + +   P I   +LL++  CK G V  A  + K +    V+PN  TY+ L        
Sbjct: 105 EMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQA 164

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 +  + MI  G  PD F+YN  I+ +CKA+ + EA  LF  M  +G T   P   
Sbjct: 165 EVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLT---PDIV 221

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           +Y  +I  L Q  R+ E   L  +M+ +G LPD+ TY  +L+G C  G + +A++    M
Sbjct: 222 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 281

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +    P++V YN  +  +C ++N  EA +L+  +   G  P+++ + +           
Sbjct: 282 QSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKL----------- 330

Query: 394 DGAFETWHEM 403
              FE W  M
Sbjct: 331 ---FEIWKRM 337



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 117/284 (41%), Gaps = 60/284 (21%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           QP+++    +++ LCK G    A  + K+                      M + G  PD
Sbjct: 7   QPDVHTYTTIINGLCKIGETVAAAGLFKK----------------------MGEAGCQPD 44

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TY+T ID+ CK R V EA D+F +M+ KG    SP   TY  +I  L    R  E  +
Sbjct: 45  VVTYSTIIDSLCKDRRVNEALDIFSYMKAKGI---SPNIFTYNSLIQGLCNFSRWREASA 101

Query: 294 LLGHMIN-----------------------------------SGCLPDVSTYKEVLEGMC 318
           +L  M++                                    G  P+V TY  ++ G  
Sbjct: 102 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYS 161

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
           L  +V EA K  + M  KG  PD+ +YN  +   C  K   EA +L+  MI  G  P + 
Sbjct: 162 LQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIV 221

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           +YN LI    +LG    A + +  M   G   D+ TY +++DG 
Sbjct: 222 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGF 265



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 25/147 (17%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E I     P+I + N L+D LC+ G +  A  + K                       
Sbjct: 208 FNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK----------------------N 245

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G+ PD  TY+  +D FCK   + +A  LF  M+   ST   P    Y I+I A+ +
Sbjct: 246 MLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ---STYLKPNMVMYNILIDAMCK 302

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYK 311
           +  ++E   L   +   G  P++  +K
Sbjct: 303 SRNLKEARKLFSELFVQGLQPNMKHWK 329


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 154/342 (45%), Gaps = 45/342 (13%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------- 217
           E + +  +P + + N+++D LCK G++  A  + +    + V P+  TY  L        
Sbjct: 260 EMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTG 319

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   L EM++ G +P+N+T N  + +  K   ++EA +L + M  KG  I + T  
Sbjct: 320 KVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCN 379

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSG-----------------------CLPDVSTY 310
              I+I  L  N ++++   ++  M   G                       C+PD+ +Y
Sbjct: 380 ---IVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISY 436

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G+C AG+V EA K   EM  K   PD   Y+ F+   C       A R+   M +
Sbjct: 437 STIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEK 496

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETW---HEMDKRGCAQDVDTYCVMIDGLFDCSK 427
            GC  ++QTYN LI     LG  +  FE +    EM +RG + DV  Y  ++  L +  +
Sbjct: 497 KGCNKTLQTYNSLI---MGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGR 553

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           V++A  +L+E++ KG+      F   +       D  A+ ++
Sbjct: 554 VKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEI 595



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 39/338 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNI--LGM----------Q 220
           QP I   NL+L   CK G+++ A  + +++K ++   N  +YNI  LG+           
Sbjct: 197 QPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQL 256

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM+ MG  P+ ++YN  +D  CK  ++ +A  L   M + G     P   TY  ++ 
Sbjct: 257 VLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVL---PDTVTYTTLLH 313

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 ++ E  ++L  M+  GC P+  T   +L  +   G++ EA + L++M  KGY  
Sbjct: 314 GYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVI 373

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-----------------------CWPSV 377
           D VT N  +  LC+N   D+A+ +   M   G                       C P +
Sbjct: 374 DTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDL 433

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            +Y+ +IS   + G    A + + EM  +    D   Y V I       K+  A  +L++
Sbjct: 434 ISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKD 493

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +  KG     + ++S +M L     +  I+ L D MR+
Sbjct: 494 MEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRE 531



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 141/297 (47%), Gaps = 26/297 (8%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN----- 215
           L+   E  ++   P     N L+ + CK G  D AE +   + K+ + P+  T+N     
Sbjct: 111 LELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISA 170

Query: 216 ------------ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
                       I     ++E++ +   P+  TYN  +  FCK  M+ EA  LFE M+  
Sbjct: 171 LCSSGKVLEASRIFRDMQIDEVLGLPQ-PNIITYNLMLGGFCKEGMLEEARALFEKMKVS 229

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
            + ++    ++Y I ++ LV+  ++ E   +L  M++ G  P+V +Y  V++G+C  G +
Sbjct: 230 ENLMNR---ESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVL 286

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +A   +  M + G  PD VTY   L   C      EA  +   M+  GC P+  T N+L
Sbjct: 287 FDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNIL 346

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           +   ++ G    A E   +M+++G   D  T  ++IDGL +  K+++A     E+VN
Sbjct: 347 LYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAI----EIVN 399



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 132/318 (41%), Gaps = 49/318 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            PE    N+L+  LC  G +D A  +  ++  K  +PN  ++ IL            G++
Sbjct: 53  SPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLE 112

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST-------------- 266
            L EM ++G +P+   YNT I +FCK     +A  L + MR  G +              
Sbjct: 113 LLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALC 172

Query: 267 ----------------------ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
                                 +  P   TY +M+    +   +EE  +L   M  S  L
Sbjct: 173 SSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENL 232

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
            +  +Y   L G+   GK+ EA   L+EM + G  P++ +YN  +  LC N    +A  L
Sbjct: 233 MNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARML 292

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
              M   G  P   TY  L+  Y   G+   A     EM + GC+ +  T  +++  L+ 
Sbjct: 293 MRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWK 352

Query: 425 CSKVEEACFLLEEVVNKG 442
             ++ EA  LL+++  KG
Sbjct: 353 EGRISEAEELLQKMNEKG 370



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 31/275 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P I   N+LL +  K G VD    +CK                      +M+  G +P+ 
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCK----------------------DMVASGVSPET 56

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           +T+N  I   C +  + +A +LF+ M  KG     P   ++ I++    +     +   L
Sbjct: 57  YTFNVLIGLLCDSGCLDDARELFDKMPEKG---CEPNEYSFGILVRGYCRAGFTSKGLEL 113

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
           LG M   G  P+   Y  ++   C  GK ++A K ++EM   G  PD+VT+N  +  LC 
Sbjct: 114 LGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCS 173

Query: 355 NKNGDEALRLYGRMIEVG-----CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           +    EA R++ R +++        P++ TYN+++  + + G  + A   + +M      
Sbjct: 174 SGKVLEASRIF-RDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENL 232

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            + ++Y + + GL    K+ EA  +L+E+V+ G++
Sbjct: 233 MNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGME 267



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 26/271 (9%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
           K  P++ + + ++  LCK G V  A+                      +   EM+     
Sbjct: 428 KCMPDLISYSTIISGLCKAGRVGEAK----------------------KKFIEMMGKNLQ 465

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD+  Y+  I +FCK   ++ A  + + M  KG    + T +TY  +I+ L   +++ E 
Sbjct: 466 PDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGC---NKTLQTYNSLIMGLGSKNQIFEI 522

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           + L+  M   G  PDVS Y  VL  +C  G+V++A   L+EM  KG  P+I +++  +K 
Sbjct: 523 YGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKA 582

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
            C   +      ++   + V C      Y++  +     GE   A E +     R     
Sbjct: 583 FCKACDFSAVDEIFEIALNV-CGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVG 641

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
              Y  +ID L    K+++A  +L ++++KG
Sbjct: 642 NFLYKDLIDHLCKDEKLDDASGILHKLIDKG 672



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P+   Y +++ +  +  R++    L   M+ SG  P+  T+  ++  +C +G +++A + 
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            ++M  KG  P+  ++   ++  C      + L L G M  +G  P+   YN LIS + +
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-VNKGLKLPYR 448
            G+ D A +   EM K G + DV T+   I  L    KV EA  +  ++ +++ L LP  
Sbjct: 139 EGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQP 198

Query: 449 KFDSYLMQLS 458
              +Y + L 
Sbjct: 199 NIITYNLMLG 208



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 7/238 (2%)

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
           + P  + YN  + +  K   V   + L + M   G    SP   T+ ++I  L  +  ++
Sbjct: 17  NPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGV---SPETYTFNVLIGLLCDSGCLD 73

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +   L   M   GC P+  ++  ++ G C AG   +  + L EM   G+ P+ V YN  +
Sbjct: 74  DARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLI 133

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM---DKR 406
              C     D+A +L   M + G  P V T+N  IS     G+   A   + +M   +  
Sbjct: 134 SSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVL 193

Query: 407 GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           G  Q ++ TY +M+ G      +EEA  L E++      +    ++ +L+ L  IG L
Sbjct: 194 GLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKL 251



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 113/264 (42%), Gaps = 26/264 (9%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM 219
           K++ E +    QP+    ++ + + CK G +  A  + K ++ K       TYN  I+G+
Sbjct: 454 KKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGL 513

Query: 220 QT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
            +          ++EM + G +PD   YN  + + C+   V +A  + + M  KG    S
Sbjct: 514 GSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGI---S 570

Query: 270 PTAKTYAIMIVALVQN---DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
           P   +++I+I A  +      ++E F +  ++    C    + Y      + + G+V +A
Sbjct: 571 PNISSFSILIKAFCKACDFSAVDEIFEIALNV----CGHKEALYSLTFNELLVGGEVVKA 626

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            +  E   ++ +      Y   +  LC ++  D+A  +  ++I+ G W    ++  +I  
Sbjct: 627 KELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDG 686

Query: 387 YFELG---EPDGAFETWHEMDKRG 407
             + G   E D   E   EM   G
Sbjct: 687 LGKRGNKHEADELAEKMMEMASEG 710



 Score = 45.8 bits (107), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 56/137 (40%)

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           PP I  YN  L+        D    L   M+  G  P   T+N+LI +  + G  D A E
Sbjct: 18  PPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARE 77

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            + +M ++GC  +  ++ +++ G        +   LL E+   G       +++ +    
Sbjct: 78  LFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFC 137

Query: 459 VIGDLGAIHKLSDHMRK 475
             G      KL D MRK
Sbjct: 138 KEGKTDDAEKLVDEMRK 154



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 66/358 (18%), Positives = 142/358 (39%), Gaps = 46/358 (12%)

Query: 32  KVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRF 91
           K   +V  ++   S ++ ++   Y  ++D+S   D+ +K +  L   ++  +++  L + 
Sbjct: 393 KAIEIVNGMWTHGSAALGNLGNSYIGLVDDS---DSRKKCMPDL---ISYSTIISGLCKA 446

Query: 92  QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151
               +   +F    G   N   +   Y++ I         +  FR++  M    K  NK 
Sbjct: 447 GRVGEAKKKFIEMMGK--NLQPDSAIYDVFIHSFCKEGKISSAFRVLKDM--EKKGCNKT 502

Query: 152 FVPVDVLLMILKQYTEKIKV----------KTQPEINALNLLLDALCKCGLVDYAETICK 201
               + L+M L    +  ++             P+++  N +L +LC+ G V  A ++  
Sbjct: 503 LQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSV-- 560

Query: 202 RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
                               L+EM+Q G +P+  +++  I  FCKA   +   ++FE   
Sbjct: 561 --------------------LDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEI-- 598

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
                +       Y++    L+    + +   L    ++         YK++++ +C   
Sbjct: 599 --ALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDE 656

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
           K+++A   L ++ +KGY  D  ++   +  L    N  EA  L  +M+E+     V+ 
Sbjct: 657 KLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMASEGKVKN 714


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 46/291 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P+I   N+L+D LCK G +  A  +                      L  MI+    PD
Sbjct: 186 KPDIYTFNILVDGLCKEGEMKKARNV----------------------LAVMIKQSVDPD 223

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             TYN+ +D +   +   +A  +F  M  +G T   P   +Y++MI  L +   ++E  +
Sbjct: 224 VITYNSLMDGYFLVKQENKATFVFNTMARRGVT---PDVHSYSVMINGLCKTKMVDEAVN 280

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           LL  M +    P+  TY  +++G+  +G++ +A+  + EM N+G P D++TYN  L  LC
Sbjct: 281 LLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALC 340

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH------------ 401
            N   D+A+ L  ++ + G  P + TY +L+    + G    A E +             
Sbjct: 341 KNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSL 400

Query: 402 ---------EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                    +M+  GC  +  T+ ++I  LF+    ++A  LL E++ +GL
Sbjct: 401 FDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGL 451



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 19/270 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           Q ++  LN+L++  C  G       +C  + +KVK   + +        +++I  G   +
Sbjct: 40  QTDLVNLNILVNCFCHLG------QVC--LNDKVKETLHFH--------DDVIAKGFQLN 83

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
             +Y T ID  CKA    E     + +R     +  P    Y+ +I +L ++  + + F 
Sbjct: 84  QVSYGTLIDGLCKA---GETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFD 140

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L   M+     PDV TY  ++ G  + G+++EA     +M  K   PDI T+N  +  LC
Sbjct: 141 LYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLC 200

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                 +A  +   MI+    P V TYN L+  YF + + + A   ++ M +RG   DV 
Sbjct: 201 KEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVH 260

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +Y VMI+GL     V+EA  LL+E+ +K +
Sbjct: 261 SYSVMINGLCKTKMVDEAVNLLKEMHSKSM 290



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 123/275 (44%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L+D LCK G    A  + + +    V+PN   Y+ +                  +M+   
Sbjct: 90  LIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKR 149

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +PD  TYNT +        + EA  LF  M  K      P   T+ I++  L +   M+
Sbjct: 150 ISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNI---KPDIYTFNILVDGLCKEGEMK 206

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +  ++L  MI     PDV TY  +++G  L  +  +A      M  +G  PD+ +Y+  +
Sbjct: 207 KARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMI 266

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC  K  DEA+ L   M      P+  TY+ LI    + G    A++  +EM  RG  
Sbjct: 267 NGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQP 326

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            DV TY  ++D L    +V++A  LL ++ ++G++
Sbjct: 327 ADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQ 361


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 137/295 (46%), Gaps = 13/295 (4%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GMQTLEE------ 224
           +P++   N L+  LCK G +D A+ +   + ++    N  TYN L  G+ +         
Sbjct: 86  KPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVL 145

Query: 225 -MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M  M   PD  TYN  I  FCK+  +  A    E M+ +     SP   TY+I+I  L 
Sbjct: 146 VMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG--CSPDTFTYSILINGLC 203

Query: 284 QNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           ++  + +   LL  MI    C   V  +  +++G C A  ++ A + L  M   G  PD+
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY+  +  LC   + D+   L  +M+  GC P V TY +L++   + G+   A      
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           M + GC  +  TY ++ DGL    K++ A  LL  + +KG       F++ L+ +
Sbjct: 324 MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSV 378



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 124/272 (45%), Gaps = 30/272 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P  +  N  + ALCK G V               P A       M+ ++ M      PD 
Sbjct: 52  PTPSMYNFFVHALCKSGKV---------------PEA-------MEVVKNMKDGACKPDV 89

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T+NT I   CKA  + EA  + + M   G    +    TY  +I  L    R  E   +
Sbjct: 90  VTFNTLIAGLCKAGRLDEAQQVLDEMERSG---FAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLC 353
           +  M  +   PD  TY  ++ G C +G+++ AY FLEEM  + G  PD  TY+  +  LC
Sbjct: 147 MQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 354 DNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
            + N  +A  L   MI    C  SV  +N L+  Y +  + D A E    M + GCA DV
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            TY  +IDGL  C  V++   LLE++V++G K
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCK 295



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           DN+TY   +   C A  +  A DL   M  +     +PT   Y   + AL ++ ++ E  
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGM--APTPSMYNFFVHALCKSGKVPEAM 74

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            ++ +M +  C PDV T+  ++ G+C AG+++EA + L+EM   G+  ++VTYN  +  L
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQD 411
                  EA+ +   M      P  QTYN +I  + + GE D A+    EM +R GC+ D
Sbjct: 135 SSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             TY ++I+GL   S + +A  LL+E++ +
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGR 221



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 36/162 (22%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEAL 362
           L D  TY  ++   CLAG+++ A   L EM  + G  P    YN F+  LC +       
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKS------- 67

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              G++ E                         A E    M    C  DV T+  +I GL
Sbjct: 68  ---GKVPE-------------------------AMEVVKNMKDGACKPDVVTFNTLIAGL 99

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
               +++EA  +L+E+   G       +++ +  LS  G  G
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSG 141


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 140/302 (46%), Gaps = 20/302 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN-------ILG-----MQT 221
           P     N L++ L +   + YA  +   + +N +  N  TYN       ILG     M  
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +  M+Q GH+ +  TYNT I  +C +   T A  + + MR  G     P   +Y  +I  
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC---KPDEWSYTELICG 674

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +ME  F L   M++ G  P+  TY  +++G C   K++ A   LE M   G  P+
Sbjct: 675 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  +  L    N   A  L   MIE G +P+V TY  +I    + G    A E ++
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 794

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRK-FDSYLMQL 457
           +M ++GC  ++ TY  +I  L    KVEEA  L  E+   GL   ++ Y K  ++Y+M  
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 854

Query: 458 SV 459
            V
Sbjct: 855 KV 856



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 147/310 (47%), Gaps = 16/310 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN--ILG 218
           L+ + +  K   +P     + L++ LC  G V+ A + I + + + + P A+T    I+ 
Sbjct: 440 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 499

Query: 219 M----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
           +          +   +M   G  P+ +TY   I   C + ++  A  LF  M   G    
Sbjct: 500 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF-- 557

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY  +I  LV+N R++  F +L  M  +G   ++ TY E+++G C+ G  ++A  
Sbjct: 558 -PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAML 616

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            +  M  +G+  ++VTYN  +K  CD+ N   ALR+   M + GC P   +Y  LI  + 
Sbjct: 617 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 676

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++ + + AF  ++EM   G   +  TY  +IDG     K++ A  LLE +   G +   +
Sbjct: 677 KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQ 736

Query: 449 KFDSYLMQLS 458
            ++  +  L+
Sbjct: 737 TYNVLIHGLT 746



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 139/314 (44%), Gaps = 25/314 (7%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           ++ +Y   +    QP +   N +++ALCK G V  AETI K+V                 
Sbjct: 369 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-------------- 414

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM     +PD FTY + I   C+   +  A  +F  M  +G     P   TY+ +I 
Sbjct: 415 ---EM-----SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC---EPNTVTYSTLIN 463

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + R+ E F L+  MI  G LP   T    +  +C  G  E+A++   +M NKG  P
Sbjct: 464 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 523

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY   +  LC +     A+ L+ RM   G +P+  TYN LI++  E      AF   
Sbjct: 524 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 583

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           + M + G   ++ TY  MI G       ++A  ++  ++ +G       +++ +      
Sbjct: 584 NLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 643

Query: 461 GDLGAIHKLSDHMR 474
           G+  +  ++ D MR
Sbjct: 644 GNTTSALRILDLMR 657



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 14/263 (5%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGM 219
           I+K Y +     T   +  L+L+ D  CK     Y E IC   K +K++     +N    
Sbjct: 636 IIKGYCDS--GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN---- 689

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
               EM+  G  P+  TY   ID +CK   +  A  L E M+  G     P  +TY ++I
Sbjct: 690 ----EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC---RPNVQTYNVLI 742

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L + +       L   MI  G  P+V TY  +++G+C  G    A +   +M  +G  
Sbjct: 743 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 802

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+++TY+  ++ L      +EA  L+  +   G  P   TY  +I  Y   G+ + AF  
Sbjct: 803 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 862

Query: 400 WHEMDKRGCAQDVDTYCVMIDGL 422
              M K GC   + TY V+I GL
Sbjct: 863 LGRMIKAGCQPTLWTYGVLIKGL 885



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 43/315 (13%)

Query: 183  LLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-----------GMQTL-EEMIQMG 229
            L+D  CK   +D A ++ + +K +  +PN  TYN+L           G + L + MI+ G
Sbjct: 706  LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 765

Query: 230  HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              P+  TY   ID  CK    + A ++F  M  +G     P   TY+ +I AL Q  ++E
Sbjct: 766  IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL---PNLLTYSSLIRALGQEGKVE 822

Query: 290  ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            E  +L   +   G +PD  TY +++E   ++GKVE A+ FL  M   G  P + TY   +
Sbjct: 823  EAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLI 882

Query: 350  K------VLCDNK------------------NGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
            K      +L D +                  + D    +  ++ E+    SVQ  N L+S
Sbjct: 883  KGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 942

Query: 386  MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
                 G    A E    M  +G   D + Y  ++  L     V+ A  + + +  +G ++
Sbjct: 943  NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 1002

Query: 446  ---PYRKFDSYLMQL 457
                Y++    L QL
Sbjct: 1003 HLNGYKELICALCQL 1017



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 117/322 (36%), Gaps = 75/322 (23%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNI------------LGMQ 220
            +P +   N+L+  L K      AE +CK  ++  + PN  TY              L ++
Sbjct: 732  RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               +MI+ G  P+  TY++ I    +   V EA +LF  +   G     P   TY  MI 
Sbjct: 792  MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI---PDEITYVKMIE 848

Query: 281  ALVQNDRMEECFSLLGHMINSGC---------------------------LPDV------ 307
            A + + ++E  F+ LG MI +GC                           LPDV      
Sbjct: 849  AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 908

Query: 308  --------------------------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
                                           ++  +  AG+  EA + L  M ++G  PD
Sbjct: 909  GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 968

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
               YN  L  L   +N D A+ ++  M   GC   +  Y  LI    +L     A  T+ 
Sbjct: 969  QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFE 1028

Query: 402  EMDKRGCAQDVDTYCVMIDGLF 423
             M  R    D     V+IDGL 
Sbjct: 1029 NMLMRTWNPDDVVQAVLIDGLL 1050



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I +    + M    S L  +  SG    +  Y  +L  +   G           M ++G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P+++ YN  +  LC + N  +A  +  ++ E    P   TY  +I  +    + D A 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           + +++M K GC  +  TY  +I+GL D  +V EA  L+ E++  G+ LP
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI-LP 488


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 121/260 (46%), Gaps = 27/260 (10%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
           T+P      +++DA CK G++D A ++   +K K  P                      P
Sbjct: 209 TKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIP----------------------P 246

Query: 233 DNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           D FTY+T ID  CK         LF E +         P   T+  +I  L +  ++E+ 
Sbjct: 247 DIFTYSTLIDALCKLSQWENVRTLFLEMIHLN----IYPNVCTFNSVIDGLCKEGKVEDA 302

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             ++ +MI  G  PDV TY  +++G  L G+V+ A +  + M NK   PDI++YN  +  
Sbjct: 303 EEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILING 362

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
               K  DEA+++   + + G  PS+ T N+L+   FELG    A   + EM   G   D
Sbjct: 363 YARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPD 422

Query: 412 VDTYCVMIDGLFDCSKVEEA 431
           + T+C ++ G F    VEEA
Sbjct: 423 LYTHCTLLGGYFKNGLVEEA 442



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 16/294 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------ 217
           + E I +   P +   N ++D LCK G V+ AE I +  ++  V P+  TYN++      
Sbjct: 271 FLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGL 330

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +  + MI     PD  +YN  I+ + + + + EA  +   +  KG     P+
Sbjct: 331 RGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGL---KPS 387

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T  +++  L +  R +   +    M+++G +PD+ T+  +L G    G VEEA     
Sbjct: 388 IVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFH 447

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           ++  +    +I  Y   +  LC N   D+A   + ++  +G  P V TY  +IS Y + G
Sbjct: 448 KLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEG 507

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             D A +   +M+  GC  D  TY V++ G    +KV E    LEE+  K    
Sbjct: 508 LLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSF 561



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 10/241 (4%)

Query: 204 KNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
           +NKVK   + +  L  + + E       P+   Y T ++  CK     +A DL   M  +
Sbjct: 155 ENKVKDAVHLFKKLVRENICE-------PNEVMYGTVMNGLCKKGHTQKAFDLLRLME-Q 206

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           GST   P  +TY I+I A  ++  ++   SLL  M      PD+ TY  +++ +C   + 
Sbjct: 207 GST--KPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQW 264

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           E       EM +    P++ T+N  +  LC     ++A  +   MIE G  P V TYNM+
Sbjct: 265 ENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMI 324

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I  Y   G+ D A E +  M  +    D+ +Y ++I+G     K++EA  +  E+  KGL
Sbjct: 325 IDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGL 384

Query: 444 K 444
           K
Sbjct: 385 K 385



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 45/232 (19%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
           I    +P+I + N+L++   +   +D A  +C+ +  K +KP+  T N+L          
Sbjct: 345 INKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRT 404

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM--RTKGSTIS----- 268
                  +EM+  GH PD +T+ T +  + K  +V EA   F  +  R + + I      
Sbjct: 405 KSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAV 464

Query: 269 -------------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
                                     P   TY  MI    Q   ++E   +L  M ++GC
Sbjct: 465 IDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGC 524

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
           L D  TY  ++ G   + KV E   FLEE+  K +  +  T    + ++ ++
Sbjct: 525 LADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAED 576



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
           T+  +I  L   +++++   L   ++    C P+   Y  V+ G+C  G  ++A+  L  
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL 203

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M      P+  TY   +   C +   D A  L   M +    P + TY+ LI    +L +
Sbjct: 204 MEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
            +     + EM       +V T+  +IDGL    KVE+A  ++  ++ KG+       D 
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGV-------DP 316

Query: 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485
            ++  ++I D   +    D  R+ ++ +I + +
Sbjct: 317 DVITYNMIIDGYGLRGQVDRAREIFDSMINKSI 349



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 76/192 (39%), Gaps = 36/192 (18%)

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGM------------------------------ 317
           +++ FSL   M+ +  LP V+++ ++L+ M                              
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 318 -----CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EV 371
                CL  + +  +  L     KG P + VT+   ++ L       +A+ L+ +++ E 
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            C P+   Y  +++   + G    AF+    M++     +  TY ++ID       ++ A
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGA 232

Query: 432 CFLLEEVVNKGL 443
             LL E+  K +
Sbjct: 233 TSLLNEMKQKSI 244


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 137/306 (44%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+  LCK G ++ A  I K  V    KPN+ T+ +L             ++ L+EM +
Sbjct: 372 NVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 431

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P   +Y   I+  C  + ++ A  L E M   G     P    Y+I+I+A     R
Sbjct: 432 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGL---KPNVVVYSILIMAYASEGR 488

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   LL  M  SG  PD+  Y  ++  +  AGK+EEA  +L E+  +G  PD VT+  
Sbjct: 489 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA 548

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           F+          EA + +  M++ G  P+   Y +LI+ +F+ G    A   +  +   G
Sbjct: 549 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALG 608

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV T    I GL    +V+EA  +  E+  KGL      + S +      G++    
Sbjct: 609 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 668

Query: 468 KLSDHM 473
           +L D M
Sbjct: 669 ELHDEM 674



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILG----------MQT 221
           P+I   N ++  L K G ++ A T    ++ + +KP+A T+   ILG           + 
Sbjct: 506 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 565

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  P+N  Y   I+   KA  + EA  +F  +   G     P  +T +  I  
Sbjct: 566 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVL---PDVQTCSAFIHG 622

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L++N R++E   +   +   G +PDV TY  ++ G C  G+VE+A++  +EM  KG  P+
Sbjct: 623 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPN 682

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I  YN  +  LC + +   A +L+  M E G  P   TY+ +I  Y +      AF  +H
Sbjct: 683 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 742

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +G       Y  ++ G      +E+A  L  E++ KG 
Sbjct: 743 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILGM------------QT 221
           P   +   +++ LC C  +  A  + +++  + +KPN   Y+IL M            + 
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M   G APD F YN  I    KA  + EA+     ++ +G     P A T+   I+ 
Sbjct: 496 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL---KPDAVTFGAFILG 552

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +M E       M++ G +P+   Y  ++ G   AG + EA      +   G  PD
Sbjct: 553 YSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPD 612

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + T + F+  L  N    EAL+++  + E G  P V TY+ LIS + + GE + AFE   
Sbjct: 613 VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 672

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM  +G A ++  Y  ++DGL     ++ A  L + +  KGL+
Sbjct: 673 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 715



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           +L+++ +C+ G +D A  + + +  K + PN  TY I+               T EEM +
Sbjct: 267 SLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK 326

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  PD    +  ID F +   + E   + + M + G  I+     TY ++I  L +  +
Sbjct: 327 TGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPIN---LITYNVLIHGLCKFGK 383

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           ME+   +L  M+  GC P+  T+  ++EG C    +  A + L+EM  +   P  V+Y  
Sbjct: 384 MEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 443

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC  K+   A +L  +M   G  P+V  Y++LI  Y   G  + A      M   G
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSG 503

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
            A D+  Y  +I  L    K+EEA   L E+  +GLK     F ++++  S  G +    
Sbjct: 504 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 563

Query: 468 KLSDHM 473
           K  D M
Sbjct: 564 KYFDEM 569



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 134/306 (43%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N LL  L KCG+++ + +     +  K+  +  TY  L              + L EM +
Sbjct: 197 NSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G  P+ F Y+  I+  C+   + EA +L   M  KG     P   TY I+   L +  R
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLV---PNTYTYTIITAGLCRAKR 313

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           M E       M  +G  PD +    +++G    G ++E  +  + M + G P +++TYN 
Sbjct: 314 MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 373

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC     ++A  +   M+ +GC P+ +T+ +LI  Y        A E   EM+KR 
Sbjct: 374 LIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 433

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
                 +Y  MI+GL  C  +  A  LLE++   GLK     +   +M  +  G +    
Sbjct: 434 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEAR 493

Query: 468 KLSDHM 473
           +L D M
Sbjct: 494 RLLDGM 499



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 143/328 (43%), Gaps = 23/328 (7%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL 217
           LK ++E  +    P++   + L+   CK G V+ A    + +C +    + PN   YN L
Sbjct: 633 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK---GIAPNIFIYNAL 689

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         +  + M + G  PD+ TY+T ID +CK+  V EA  LF  M +KG 
Sbjct: 690 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 749

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P +  Y  ++    +   ME+  +L   M+  G    +S +  +++G C + K++E
Sbjct: 750 ---QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQE 805

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
           A +  +EM  K   PD VTY   +   C     +EA  L+  M E        TY  L+ 
Sbjct: 806 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 865

Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            Y +LG+    F  + +M  +G   D  TY ++I        + EA  L +EVV KG+  
Sbjct: 866 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 925

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                D  +  L    DL    KL D M
Sbjct: 926 KGTIHDLLITALCKREDLTEASKLLDEM 953



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 123/278 (44%), Gaps = 15/278 (5%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
            QP     N L+   CK G ++ A  + + +  K      ++N L              Q 
Sbjct: 750  QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQL 809

Query: 222  LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +EMI     PD+ TY T ID  CKA  + EA  LF+ M+ +   + + T   Y  ++  
Sbjct: 810  FQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVT---YTSLMYG 866

Query: 282  LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
              +  +  E F+L   M+  G  PD  TY  V+   C    + EA+K  +E+  KG    
Sbjct: 867  YNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK 926

Query: 342  IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
               ++  +  LC  ++  EA +L   M E+G  PS+   N L+  + E G+ D A   + 
Sbjct: 927  GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFE 986

Query: 402  EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             +   G   D  T   +++G  + +  E+A  L++++V
Sbjct: 987  GVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 121/283 (42%), Gaps = 17/283 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N L+D LCK G +  A  +   +  K ++P++ TY+ +                
Sbjct: 681 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 740

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G  P +F YN  +   CK   + +A +LF  M  KG      T  ++  +I  
Sbjct: 741 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA----TTLSFNTLIDG 796

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++ +++E   L   MI    +PD  TY  V++  C AGK+EEA    +EM  +    D
Sbjct: 797 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 856

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VTY   +          E   L+ +M+  G  P   TY ++I  + +      AF+   
Sbjct: 857 TVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRD 916

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           E+  +G       + ++I  L     + EA  LL+E+   GLK
Sbjct: 917 EVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 959



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 40/245 (16%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G +P    ++  ID++ +  M+ EAA++F              AK  +I+I +L++    
Sbjct: 155 GSSP--VVFDILIDSYKRMGMLDEAANVF------------FVAKNDSILI-SLIR---- 195

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
             C SLL  ++  G +     + +V  GM  A           +MG      D+ TY   
Sbjct: 196 --CNSLLKDLLKCGMM---ELFWKVYNGMLDA-----------KMGF-----DVYTYTYL 234

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC   +   A R+   M E G  P+   Y+++I    ++G+ D A E    M ++G 
Sbjct: 235 VGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGL 294

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             +  TY ++  GL    ++ EA    EE+   GLK  Y    + +      GD+  + +
Sbjct: 295 VPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR 354

Query: 469 LSDHM 473
           + D M
Sbjct: 355 IKDVM 359


>gi|224091084|ref|XP_002309173.1| predicted protein [Populus trichocarpa]
 gi|222855149|gb|EEE92696.1| predicted protein [Populus trichocarpa]
          Length = 506

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 159/364 (43%), Gaps = 32/364 (8%)

Query: 123 DILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY--TEKI----------- 169
           D +  T  K  QF  + S+LD++++      P      +++ Y  T K            
Sbjct: 81  DFIFKTLVKTSQFHHIPSVLDHLEKVESFEPPESTFAYLIEVYGRTNKTHEAIELFYRIP 140

Query: 170 KVKTQPEINALNLLLDALCKC--GLVDYAETICKRVKNKVKPNANTYNIL---------- 217
           K +  P + +LN L+  LC+   GL    E + K     ++   +T+ +L          
Sbjct: 141 KFRCVPSVYSLNTLISVLCRNSKGLKLVPEILLKSQVMNIRVEESTFQVLITALCRVRKV 200

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT--EAADLFEFMRTKGSTISSPTAK 273
              ++ L  M+  G   +   Y+  +   C+ +  T  E     E +R  G     P   
Sbjct: 201 GFAIEMLNCMVNDGFIVNAEIYSLLLSCLCEQKDATKFEVIGFLEQLRKLGFF---PGMV 257

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y+ +I  LV+  R  +   +L HM +    PD+  Y  VL G+       +A +  +E+
Sbjct: 258 DYSNVIRFLVKGKRGLDALHVLNHMKSDRIKPDIFCYTMVLHGVIEDKDYLKADELFDEL 317

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G  PD  TYN ++  LC   N    +++   M E+GC P++ TYNML+    ++GE 
Sbjct: 318 LVFGLVPDAYTYNVYINGLCKQNNVQAGIKMVASMEELGCKPNLITYNMLVKQLCKVGEL 377

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
             A E   EM  +G   ++ TY +MIDGL    K+ EAC L EE ++KGL      FD  
Sbjct: 378 SKAGELVREMGLKGIGLNMQTYRIMIDGLASNGKIVEACGLFEEALDKGLCTQSLMFDEI 437

Query: 454 LMQL 457
           +  L
Sbjct: 438 ICGL 441



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 6/245 (2%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-TYAIMIVALVQNDRMEE 290
           P  ++ NT I   C+    ++   L   +  K   ++    + T+ ++I AL +  ++  
Sbjct: 146 PSVYSLNTLISVLCRN---SKGLKLVPEILLKSQVMNIRVEESTFQVLITALCRVRKVGF 202

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE--EAYKFLEEMGNKGYPPDIVTYNCF 348
              +L  M+N G + +   Y  +L  +C        E   FLE++   G+ P +V Y+  
Sbjct: 203 AIEMLNCMVNDGFIVNAEIYSLLLSCLCEQKDATKFEVIGFLEQLRKLGFFPGMVDYSNV 262

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           ++ L   K G +AL +   M      P +  Y M++    E  +   A E + E+   G 
Sbjct: 263 IRFLVKGKRGLDALHVLNHMKSDRIKPDIFCYTMVLHGVIEDKDYLKADELFDELLVFGL 322

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
             D  TY V I+GL   + V+    ++  +   G K     ++  + QL  +G+L    +
Sbjct: 323 VPDAYTYNVYINGLCKQNNVQAGIKMVASMEELGCKPNLITYNMLVKQLCKVGELSKAGE 382

Query: 469 LSDHM 473
           L   M
Sbjct: 383 LVREM 387



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 32/229 (13%)

Query: 191 GLVDYAETICKRVKNK----------------VKPNANTYNILGMQTLE----------- 223
           G+VDY+  I   VK K                +KP+   Y ++    +E           
Sbjct: 255 GMVDYSNVIRFLVKGKRGLDALHVLNHMKSDRIKPDIFCYTMVLHGVIEDKDYLKADELF 314

Query: 224 -EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            E++  G  PD +TYN  I+  CK   V     +   M   G     P   TY +++  L
Sbjct: 315 DELLVFGLVPDAYTYNVYINGLCKQNNVQAGIKMVASMEELGC---KPNLITYNMLVKQL 371

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   + +   L+  M   G   ++ TY+ +++G+   GK+ EA    EE  +KG     
Sbjct: 372 CKVGELSKAGELVREMGLKGIGLNMQTYRIMIDGLASNGKIVEACGLFEEALDKGLCTQS 431

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN-MLISMYFEL 390
           + ++  +  LC      +AL+L  +M+     P  + +  +L+S  F+L
Sbjct: 432 LMFDEIICGLCHRDLSCKALKLLEKMVGKNVSPGARAWKALLLSSGFKL 480


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 192/441 (43%), Gaps = 50/441 (11%)

Query: 54  LYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAH 113
            ++ I +++ ++ + ++   +L    T   ++  L+R Q +E  A R   WA  Q N+  
Sbjct: 27  FHKPISNSTLSFASTQQHTATLSSNFTPAQLLDTLRR-QNDETAALRLLSWASKQPNFRP 85

Query: 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD--VLLMILKQYT----- 166
               Y  ++  L     K   F    SM D ++    +   +D  VLL+ +  Y      
Sbjct: 86  NSSIYEEILRKLG----KVGSFN---SMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELY 138

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
           E+I    +       L LD L    L++          NK+K   N ++         M+
Sbjct: 139 EEILCIVEVMEVEFGLALDTLLYNFLLNVLVD-----GNKLKLVENVHST--------MV 185

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
             G  PD  T+N  I   CKA  +  A  + E M + G     P  KT+  ++   ++  
Sbjct: 186 SKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLV---PDEKTFTTLMQGFIEEG 242

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN----------- 335
            M+  F +   M+++GC     T   ++ G C  G++EEA  F++EM N           
Sbjct: 243 NMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELY 302

Query: 336 -----KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
                KG  PD  TYN  +  LC      EAL L   M   GC  +V TYN LI  + + 
Sbjct: 303 NEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKN 362

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
            + + A E + +M+ +G +++  TY  +IDGL    +V+EA  L+++++ +GLK     +
Sbjct: 363 KKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTY 422

Query: 451 DSYLMQLSVIGDLGAIHKLSD 471
           +S L      GD   I K +D
Sbjct: 423 NSMLTYFCREGD---IQKAAD 440



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 137/297 (46%), Gaps = 29/297 (9%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
           M ++ Y E      QP+    N+L+D+LC  G +  A                    LG+
Sbjct: 297 MAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEA--------------------LGL 336

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             L EM   G A +  TYNT ID FCK + + EA ++F+ M  +G    S  + TY  +I
Sbjct: 337 --LREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGL---SRNSVTYNTLI 391

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L ++ R++E   L+  MI  G  PD  TY  +L   C  G +++A   ++ M + G  
Sbjct: 392 DGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCE 451

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PDIVTY   +  LC     + A RL   +   G   +   YN +I   F+      A   
Sbjct: 452 PDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRL 511

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDC-SKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           + EM+++G   D  TY ++  GL +    + EA   + E++ KG  LP  +F S+ M
Sbjct: 512 FREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGF-LP--EFSSFYM 565



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 24/229 (10%)

Query: 163 KQYTEKIKVKTQPEINAL-------NLLLDALCKCGLV-DYAETICKRVKNKVKPNANTY 214
           K+  E  ++  Q EI  L       N L+D LCK   V + A+ + + +   +KP+  TY
Sbjct: 363 KKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTY 422

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N +                ++ M   G  PD  TY T I   CKA  V  A+ L   ++ 
Sbjct: 423 NSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQL 482

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC-LAG 321
           KG  +   T   Y  +I AL +  R +E   L   M   G  PD  TYK V  G+    G
Sbjct: 483 KGMVL---TPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGG 539

Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
            + EA  F+ EM  KG+ P+  ++    + LC     D  ++L   ++E
Sbjct: 540 PIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVDLVME 588


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 16/290 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQT 221
           P  ++ N L+   C  G  + A + +   +K +  P   TYNI+             ++ 
Sbjct: 433 PNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRV 492

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LE M   G  PD ++Y   I  FCK   +  A+ +F  M  +G     P   TY  +I  
Sbjct: 493 LELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLC---PNEVTYTALISG 549

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++++++    +L  M  SGC P+V TY  ++ G+        A +  + M  +   PD
Sbjct: 550 YCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPD 609

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY+  +  LC+N     AL ++ +M++ GC P++ TY+ LI    + G  + A E + 
Sbjct: 610 VVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFS 669

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           E+ K+G   D  TY  MI+      KV+ A   L E++N G +   + +D
Sbjct: 670 ELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYD 719



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 132/286 (46%), Gaps = 29/286 (10%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           ++ +Y + ++   QP +   N +++ALCK G V  AE+I  +V                 
Sbjct: 212 VMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV----------------- 254

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                 + G  PD FTY + I  +C+ R +  A ++F  M  +G     P A TY+ +I 
Sbjct: 255 -----FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEG---CEPNAATYSTLIN 306

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L  + R+ E    +  M   G LP V T+   +  +C  G++E+A+K   +M  KG  P
Sbjct: 307 GLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKP 366

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY     ++   +    A+ L+ RM   G  P+  TYN L+++  E  E D A   +
Sbjct: 367 NVYTYT---SLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVF 423

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
           + M K GC  +  +Y  +I G       E+A  +L  ++ KG   P
Sbjct: 424 NMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNML-KGRPTP 468



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 134/285 (47%), Gaps = 21/285 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN-----ILGMQTLEE--- 224
           +P     + L++ LC  G V+ A + I +  ++ V P  +T+      +  M  +E+   
Sbjct: 295 EPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWK 354

Query: 225 ----MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M + G  P+ +TY + I     +RM   A  LF  M   G     P   TY  ++ 
Sbjct: 355 IFIDMKKKGCKPNVYTYTSLISGQRVSRM---AIGLFHRMSRDGVV---PNTVTYNALMN 408

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP- 339
            L++N  ++    +   M   GCLP+ S+Y E++ G C  G  E+A   L  M  KG P 
Sbjct: 409 VLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNML-KGRPT 467

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P +VTYN  +K  CD+ + D A+R+   M   GC P   +Y  LIS + ++ + + A   
Sbjct: 468 PTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGM 527

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           ++EM  RG   +  TY  +I G     K++ A  +LE +   G +
Sbjct: 528 FNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCR 572



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 126/285 (44%), Gaps = 17/285 (5%)

Query: 204 KNKVKPNANTYNILGMQTLEEMIQMGHA-------------PDNFTYNTAIDTFCKARMV 250
           ++ V PN  TYN L M  L E +++  A             P+  +YN  I  +C     
Sbjct: 393 RDGVVPNTVTYNAL-MNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDT 451

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A  +   M  KG    +PT  TY I+I     +   +    +L  M  +GC PD  +Y
Sbjct: 452 EKAMSMLTNM-LKGR--PTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSY 508

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
            E++ G C   K+E A     EM ++G  P+ VTY   +   C ++  D A R+  RM  
Sbjct: 509 TELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKR 568

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            GC P+VQTYN+LI    +     GA E    M +   + DV TY  +I+GL +   +  
Sbjct: 569 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPL 628

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           A  +  ++V  G       + S +  L   G +    ++   ++K
Sbjct: 629 ALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKK 673



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 41/341 (12%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------- 217
           T  +K +  P +   N+++   C  G  D A  + + +K N  +P+  +Y  L       
Sbjct: 459 TNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKI 518

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                  GM    EM+  G  P+  TY   I  +CK   +  AA + E M+  G     P
Sbjct: 519 SKMELASGM--FNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGC---RP 573

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
             +TY ++I  L + +       L   M+     PDV TY  V+ G+C  G +  A +  
Sbjct: 574 NVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMF 633

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            +M   G  P++ TY+  ++ L      +EA  ++  + + G  P   TY  +I +    
Sbjct: 634 NKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMS 693

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---- 446
           G+ D AF+   EM   GC   + TY V+I GL +           E V +K + LP    
Sbjct: 694 GKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQN-----------EMVYHKLVALPNAAS 742

Query: 447 YRKFDSYLMQLSVIGDLGAIHKLS----DHMRKFYNPVIAR 483
              FD  ++   VI  L +  KL+    +  R+ Y+ +++R
Sbjct: 743 TSTFDDQIINKDVISVLSS--KLAELDFELSRQLYDALLSR 781



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 53/335 (15%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNI------------LGMQ 220
           +P +   N+L+  L K      AE +CK  ++ K+ P+  TY+             L ++
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALE 631

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              +M++ G  P+  TY++ I    +   V EA ++F  ++ +G     P   TY  MI 
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLI---PDEVTYVKMIE 688

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             V + +++  F  LG MIN+GC P + TY  +++G+    + E  Y  L  + N     
Sbjct: 689 VCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL----QNEMVYHKLVALPNAASTS 744

Query: 341 ---------DIVT-----------------YNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
                    D+++                 Y+  L  L  +    EA  LY  M+     
Sbjct: 745 TFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQC 804

Query: 375 PSVQTY-NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
           P+  TY + LIS+   L + D A + +  M  + C   +  Y  +I  L    + +EA F
Sbjct: 805 PNQDTYKHFLISLLRAL-KVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARF 863

Query: 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
           + E+++++ L       D  +  + + G LGA +K
Sbjct: 864 VFEKMLSRALNA-----DEIVWTILINGLLGAGYK 893



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 5/226 (2%)

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           KA M T+A +  +    +G  +      TY  +++ L + +           ++  G  P
Sbjct: 171 KAEM-TQALNYLDMFSQRGPKMG---LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQP 226

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           ++  Y  V+  +C  G V +A   + ++   G  PD  TY   +   C N++ D A  ++
Sbjct: 227 NLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIF 286

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
            RM E GC P+  TY+ LI+     G  + A +   EM + G    V T+   I  L D 
Sbjct: 287 NRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDM 346

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG-DLGAIHKLS 470
            ++E+A  +  ++  KG K     + S +    V    +G  H++S
Sbjct: 347 GRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMS 392



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 69/140 (49%)

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  P+++ YN  +  LC + N  +A  +  ++ + G  P   TY  +I  Y    + D 
Sbjct: 222 EGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDS 281

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           AFE ++ MD+ GC  +  TY  +I+GL +  +V EA   + E+   G+      F + ++
Sbjct: 282 AFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIV 341

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
            L  +G +    K+   M+K
Sbjct: 342 ALCDMGRIEDAWKIFIDMKK 361


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 183/409 (44%), Gaps = 39/409 (9%)

Query: 84  VVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSM 141
           V+G+++   F +K   A R F W   ++    E L    +I ++ S   K  +     S+
Sbjct: 130 VLGIVKGLGFYKKCDTALRVFEWV--RNRKESELLLNGSIIAVIISILGKGGRVSAAASL 187

Query: 142 LDYMKRNN---KVFVPVDVL------------LMILKQYTEKIKVKTQPEINALNLLLDA 186
           L  + ++     V+    ++            +M+ K+  E   V  +P +   N++L+ 
Sbjct: 188 LHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEE---VGCKPTLITYNVILNV 244

Query: 187 LCKCGLV-DYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAP 232
             K G+  +    +  R+K+  + P++ TYN L                L+EM   G +P
Sbjct: 245 YGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSP 304

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D  TYN  +D + K+R   EA ++ + M   G     P+  TY  +I A  ++  +E+  
Sbjct: 305 DKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGC---PPSIVTYNSLISAYARDGLLEDAL 361

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            L   M+  G  PDV TY  +L G   AGK + A +  EEM N+G  P+I T+N  +K+ 
Sbjct: 362 ELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMH 421

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
            +     E ++++  +    C P + T+N L+S++ + G        + EM + G   + 
Sbjct: 422 GNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPER 481

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           DT+  +I     C   ++A  + + ++  G+      +++ L  L+  G
Sbjct: 482 DTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 530



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 6/257 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI-V 280
           L  + + G   D + Y + I  F       EA  +F+ M   G     PT  TY +++ V
Sbjct: 188 LHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGC---KPTLITYNVILNV 244

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV-EEAYKFLEEMGNKGYP 339
                    +   L+  M ++G  PD  TY  ++   C  G + EEA   L+EM   G+ 
Sbjct: 245 YGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLIS-CCRRGNLYEEAAGVLKEMKLAGFS 303

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           PD VTYN  L V   ++   EA+ +   M   GC PS+ TYN LIS Y   G  + A E 
Sbjct: 304 PDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALEL 363

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
            ++M ++G   DV TY  ++ G     K + A  + EE+ N+G K     F++ +     
Sbjct: 364 KNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGN 423

Query: 460 IGDLGAIHKLSDHMRKF 476
            G    + K+ + ++ F
Sbjct: 424 RGKFTEMMKVFEDIKTF 440



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 118/280 (42%), Gaps = 51/280 (18%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPN-----------AN 212
           Y   ++    P++++ N +L AL + GL   +E +   +K+ + KPN           AN
Sbjct: 504 YKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 563

Query: 213 TYNILGMQTLEEMI------------------------------------QMGHAPDNFT 236
              I  M  L E I                                    Q G +PD  T
Sbjct: 564 GKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITT 623

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
            N  +  + + +MV +A ++ + M+  G T   P+  TY  ++    ++   E    +L 
Sbjct: 624 LNAMVSIYGRRQMVAKANEILDCMKRGGFT---PSLTTYNSLMYMYSRSANFERSEEILR 680

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            ++  G  PD+ +Y  V+   C  G++ +A + L EM   G  PDI+TYN F+     + 
Sbjct: 681 EILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADS 740

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              EA+ +   MI+ GC P+  TYN ++  Y +L   D A
Sbjct: 741 MFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEA 780



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 115/280 (41%), Gaps = 22/280 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQT 221
           PE +  N L+ +  +CG  D A  + KR ++  V P+ ++YN +              + 
Sbjct: 479 PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKV 538

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM      P+  TY + +  +   + +     L E +    S I  P A     +++ 
Sbjct: 539 LAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIY---SGIIEPRAVLLKTLVLV 595

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + D + E       +   G  PD++T   ++        V +A + L+ M   G+ P 
Sbjct: 596 NSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPS 655

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  + +   + N + +  +   ++  G  P + +YN +I  Y   G    A     
Sbjct: 656 LTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLS 715

Query: 402 EMDKRGCAQDVDTYCVMI-----DGLFDCSKVEEACFLLE 436
           EM + G A D+ TY   I     D +F    ++  C++++
Sbjct: 716 EMRESGPAPDIITYNTFIASYAADSMF-VEAIDVVCYMIK 754



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 116/303 (38%), Gaps = 31/303 (10%)

Query: 175 PEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQT 221
           P I   N L+ A  + GL+ D  E   + V+  +KP+  TY  L             +Q 
Sbjct: 339 PSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQI 398

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            EEM   G  P+  T+N  I         TE   +FE ++T      SP   T+  ++  
Sbjct: 399 FEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKT---FQCSPDIVTWNTLLSV 455

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             QN    E   +   M  +G +P+  T+  ++      G  ++A    + M   G  PD
Sbjct: 456 FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPD 515

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + +YN  L  L       ++ ++   M +  C P+  TY  L+  Y    E +       
Sbjct: 516 LSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIE------- 568

Query: 402 EMDKRGCAQDVDTYCVMIDG----LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               R CA   + Y  +I+     L     V   C LL E     L+L  R F   +  L
Sbjct: 569 ----RMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTL 624

Query: 458 SVI 460
           + +
Sbjct: 625 NAM 627



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 16/191 (8%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY 214
           D+L+   + + E  +    P+I  LN ++    +  +V  A  I   +K     P+  TY
Sbjct: 600 DLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTY 659

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N L              + L E++  G  PD  +YNT I  +C+   + +A+ +   MR 
Sbjct: 660 NSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRE 719

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G    +P   TY   I +   +    E   ++ +MI  GC P+ STY  +++  C   +
Sbjct: 720 SGP---APDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNR 776

Query: 323 VEEAYKFLEEM 333
            +EA  F+  +
Sbjct: 777 RDEASMFVNNL 787



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 131/349 (37%), Gaps = 80/349 (22%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P++     LL    K G    A  I + ++N+  KPN  T+N L             M+
Sbjct: 373 KPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK 432

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------STISS-- 269
             E++     +PD  T+NT +  F +  M +E + +F+ M+  G         + ISS  
Sbjct: 433 VFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYS 492

Query: 270 ---------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   +Y  ++ AL +    ++   +L  M +  C P+  
Sbjct: 493 RCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNEL 552

Query: 309 TYKEVL---------EGMCL------AGKVE--------------------EAYKFLEEM 333
           TY  +L         E MC       +G +E                    E  +   E+
Sbjct: 553 TYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLEL 612

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G+ PDI T N  + +    +   +A  +   M   G  PS+ TYN L+ MY      
Sbjct: 613 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 672

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           + + E   E+  +G   D+ +Y  +I       ++ +A  +L E+   G
Sbjct: 673 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESG 721


>gi|255661000|gb|ACU25669.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 376

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L +MI+ G  P+   YNT I+    A    +A  +F   R  G+   SPT  TY  +
Sbjct: 149 VSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF---REMGTVHCSPTIITYNTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +N+   E + L+  M+  G  P V TY  +++G+CL  KVE A +   ++ +KG+
Sbjct: 206 INGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ T+N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVGKTQRALSLYFXMNRWKCAPNLVTHNTLMEGFYKDGDIRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            W  + + G   D+ +Y + + GL  C+++ +A   L + V K
Sbjct: 326 IWARVLRNGLEPDIISYNITLKGLCSCNRICDAILFLHDSVRK 368



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 17/317 (5%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLE 223
           +++ N+++  L   G VD   +I + +K +    ++ TY IL             +  LE
Sbjct: 59  VSSFNIMMRGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLE 118

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
              Q G   D F Y+  I+  CK   + +A  +   M   G     P A  Y  +I  LV
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGC---KPNAHVYNTLINGLV 175

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              + E+   +   M    C P + TY  ++ G+C      EAY  ++EM  KG  P ++
Sbjct: 176 GASKFEDAIRVFREMGTVHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVI 235

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +K LC +   + AL+L+ ++I  G  P VQ +N+LI     +G+   A   +  M
Sbjct: 236 TYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQRALSLYFXM 295

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           ++  CA ++ T+  +++G +    +  A  +   V+  GL+     ++  L  L     +
Sbjct: 296 NRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNGLEPDIISYNITLKGLCSCNRI 355

Query: 464 -GAIHKLSDHMRKFYNP 479
             AI  L D +RK   P
Sbjct: 356 CDAILFLHDSVRKKIVP 372



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 4/221 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +E+++   +PD   YNT ++ + +   + +  +L+E M  +G+     +  ++ IM+  L
Sbjct: 14  KEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEGNR----SVSSFNIMMRGL 69

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               +++E  S+   M  S  + D  TY  ++ G C  G + ++   LE    KG   D 
Sbjct: 70  FDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEMAEQKGGVLDA 129

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
             Y+  +  LC   N D+A+ +   MI+ GC P+   YN LI+      + + A   + E
Sbjct: 130 FAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE 189

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M    C+  + TY  +I+GL       EA  L++E++ KGL
Sbjct: 190 MGTVHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGL 230



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 18/197 (9%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++ + E   V   P I   N L++ LCK  +   A  + K +  K + P+  TY++L   
Sbjct: 184 IRVFREMGTVHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKG 243

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM-RTKGSTI 267
                     +Q   ++I  G  PD   +N  I   C       A  L+  M R K    
Sbjct: 244 LCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQRALSLYFXMNRWK---- 299

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            +P   T+  ++    ++  +     +   ++ +G  PD+ +Y   L+G+C   ++ +A 
Sbjct: 300 CAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNGLEPDIISYNITLKGLCSCNRICDAI 359

Query: 328 KFLEEMGNKGYPPDIVT 344
            FL +   K   P  +T
Sbjct: 360 LFLHDSVRKKIVPTKIT 376



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  ++E    P    YN +++ YF + +    FE W  M   G  + V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEG-NRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLE 436
            ++ +M+ GLFD  KV+E   + E
Sbjct: 60  SSFNIMMRGLFDXGKVDEVISIWE 83



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C +G ++ A +  +E+      PD V YN  L          +   L+  M   G   SV
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEGN-RSV 59

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            ++N+++   F+ G+ D     W  M K    +D  TY +++ G      + ++  +LE 
Sbjct: 60  SSFNIMMRGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEM 119

Query: 438 VVNKG 442
              KG
Sbjct: 120 AEQKG 124


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 174/407 (42%), Gaps = 40/407 (9%)

Query: 65  YDNMEKALDSLGVPLTTDS----VVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
           + +  +A D +GV     S    V+G  Q  +FEE  A    MW   ++ ++ +     +
Sbjct: 165 FAHARQAFDGMGVRPDARSFRALVLGCCQEGRFEEADALLAAMW---REGFSLDSATCTV 221

Query: 121 MIDILSSTKYKAKQFR----LVCSMLDYMKRNNKVFVPVDVLLMILKQYT--------EK 168
           ++        +  +FR    L   M++     N V     V  +  + Y         E 
Sbjct: 222 VVRAFC----RQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEM 277

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNK-VKPNANTYNIL--------- 217
           +    +P +     L+D LCK G  + A     K VK+   KPN +TY ++         
Sbjct: 278 VGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGK 337

Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                  L  M++ G AP+  TY T ID  C+      A +L   M+ +G     P   T
Sbjct: 338 LARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFL---PNIYT 394

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
           Y  +I    +  ++++ + +L    + G  PD  TY  ++   C  G +  A     +M 
Sbjct: 395 YNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMA 454

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
                PDI TY   + + C  +  +++ +L+ + + +G  P+ QTY  +I+ Y  +G+  
Sbjct: 455 ENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKST 514

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            A + +  M + GC  D  TY  +I GL   S++EEA  L E +++K
Sbjct: 515 SALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDK 561



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 5/195 (2%)

Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
           EA D+   +R+ G  +   TA    ++ V L Q             M   G  PD  +++
Sbjct: 131 EATDMLLELRSHGLPLVVETANW--VLRVGLRQRHHFAHARQAFDGM---GVRPDARSFR 185

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
            ++ G C  G+ EEA   L  M  +G+  D  T    ++  C      +   L+GRM+E+
Sbjct: 186 ALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEM 245

Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           G  P+V  Y   +    + G    AF    EM  +G   +V T+  +IDGL      E A
Sbjct: 246 GNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERA 305

Query: 432 CFLLEEVVNKGLKLP 446
             L  ++V      P
Sbjct: 306 FRLFLKLVKSSSYKP 320



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 103/273 (37%), Gaps = 53/273 (19%)

Query: 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE 176
           A+ L + ++ S+ YK         +  Y K             M+L +  E+      P 
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAE-----MLLGRMVEQ---GLAPN 356

Query: 177 INALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN-ILG-------MQTLEEMIQ 227
            N    L+D  C+ G  D A  +  ++K     PN  TYN I+G       +Q   ++++
Sbjct: 357 TNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLR 416

Query: 228 M----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG--------STISS------ 269
           M    G  PD  TY   I   CK   +T A DLF  M            +TI +      
Sbjct: 417 MATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQR 476

Query: 270 ------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
                             PT +TY  MI    +  +      +   M+  GCLPD  TY 
Sbjct: 477 QMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYG 536

Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
            ++ G+C   ++EEA    E M +K   P  VT
Sbjct: 537 ALISGLCKESRLEEARALFETMLDKHMVPCDVT 569



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 60/167 (35%), Gaps = 9/167 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           L D     GLV   +T    +    +   +T     ++  E M+Q G  PD  TY   I 
Sbjct: 484 LFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTS---ALKVFERMVQHGCLPDPITYGALIS 540

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             CK   + EA  LFE M  K      P   T   +     + D+     S L  +    
Sbjct: 541 GLCKESRLEEARALFETMLDKHMV---PCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKR- 596

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
                     ++  +     ++ A  FL+ + +K Y  D  TY  F+
Sbjct: 597 --QQAHAADALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFI 641


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 137/294 (46%), Gaps = 16/294 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---- 217
           +Q ++ +K    P+I + N L+   C+ G +  A  +   ++   +  N  TYN L    
Sbjct: 363 QQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGL 422

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++  E+MI  G  PD  TY   ++  CK   +  A + F+ M   G    +
Sbjct: 423 CRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGL---A 479

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P    Y   IV  ++     + F L   M+  G  PDV TY   + G+C  G +EEA + 
Sbjct: 480 PDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGEL 539

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L++M   G+ PD VTY  F+    +N +  E   ++  M+  G  P+V TY +LI  +  
Sbjct: 540 LQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHAL 599

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            G  D A   + EM ++G   +V TY V+I+G     K+++AC    E+  KG+
Sbjct: 600 NGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGI 653



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 156/337 (46%), Gaps = 16/337 (4%)

Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VK 208
           K+    ++L+  L+ Y    +   +P +   N +L + CK G V  A  +  +++ +   
Sbjct: 210 KILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCY 269

Query: 209 PNANTYNIL--GMQT----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P+  T+N+L  G+            ++EM + G     +TYN  I  +CK  ++ EA  L
Sbjct: 270 PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALAL 329

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           +E M T+G    SPT  ++  ++    +  +M +    L  M+    +PD+ +Y  ++ G
Sbjct: 330 WEEMVTRGV---SPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYG 386

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C  G + EA+  L+E+  +    +IVTYN  +  LC   + + AL+L   MI  G  P 
Sbjct: 387 FCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPD 446

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V TY +L++   +LG    A E + EM   G A D   Y   I G        +A  L E
Sbjct: 447 VVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQE 506

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E++ KG       ++ ++  L  +G+L    +L   M
Sbjct: 507 EMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKM 543



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 16/277 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N L+D LC+ G ++ A  + + + N+ + P+  TY +L              +  +EM+ 
Sbjct: 416 NTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLH 475

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +G APD F Y   I    K     +A  L E M TKG     P   TY + +  L +   
Sbjct: 476 VGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGF---PPDVITYNVFVNGLCKLGN 532

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   LL  MI  G +PD  TY   +      G + E  +   +M ++G  P +VTY  
Sbjct: 533 LEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTV 592

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +     N   D A+  +  M E G  P+V TYN+LI+ + ++ + D A + + EM ++G
Sbjct: 593 LIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKG 652

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              +  TY ++I+   +  K +EA  L  +++ K ++
Sbjct: 653 IFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIR 689



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 16/286 (5%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPN--ANTYNILG 218
           LK   + I     P++    +L++  CK G ++   E   + +   + P+  A T  I+G
Sbjct: 432 LKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491

Query: 219 MQTL----------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
              L          EEM+  G  PD  TYN  ++  CK   + EA +L + M   G    
Sbjct: 492 ELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHV-- 549

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY   + A ++N  + E   +   M++ G  P V TY  ++    L G+++ A  
Sbjct: 550 -PDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMA 608

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
           +  EM  KG  P+++TYN  +   C  +  D+A + +  M E G +P+  TY +LI+   
Sbjct: 609 YFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENC 668

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
            +G+   A   + +M  +    D  T+  ++  L    KV+   F+
Sbjct: 669 NMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQAVQFI 714



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 1/193 (0%)

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           +C  +   M+ +  LPDV     +L+ +     + +A +    MG  G  P + TYN  L
Sbjct: 185 QCLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTML 244

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C       AL L  +M E GC+PS  T+N+LI+   + GE   A     EM K G  
Sbjct: 245 HSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLR 304

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHK 468
               TY  +I G      + EA  L EE+V +G+       ++ +      G +  A  +
Sbjct: 305 VSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQ 364

Query: 469 LSDHMRKFYNPVI 481
           LSD ++K   P I
Sbjct: 365 LSDMLKKNLMPDI 377



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 3/185 (1%)

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E + ++G     G  P V+TY  +L   C  G+V+ A   + +M  +G  P  VT+N  +
Sbjct: 223 EVYRMMGEY---GIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLI 279

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             L       +A  L   M + G   S  TYN LI  Y + G    A   W EM  RG +
Sbjct: 280 NGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVS 339

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
             V ++  ++ G     K+ +A   L +++ K L      +++ +     +G++G    L
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399

Query: 470 SDHMR 474
            D +R
Sbjct: 400 LDELR 404


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 171/408 (41%), Gaps = 74/408 (18%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175
           + YN++I+    ++  A +F     +   MKR  +V                      +P
Sbjct: 46  VTYNVLIN----SRCNAGEFGKALDLFQSMKREKRV----------------------EP 79

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTL 222
           +    N L+  LC  G  + A  +   +++K +  N  TY+ +              + L
Sbjct: 80  DRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVL 139

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------------- 269
           EEM+  G  PD F +N  +  F ++  + +A ++++ M   G    +             
Sbjct: 140 EEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKI 199

Query: 270 ---------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
                                P   T++ +I  L +   +E+   + G M+ +GC P+  
Sbjct: 200 GKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKY 259

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           TY  ++ G+C A KV +A +  E+M     PPD V YN  +   C   + DEA +LY  M
Sbjct: 260 TYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 319

Query: 369 I-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
               G  P++ T+N LI  + +LG+   A E   EM  +G A D  TY ++I GL   +K
Sbjct: 320 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATK 379

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           ++EA  + +++  K   L      S++  L   G++   + + +  RK
Sbjct: 380 LDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRK 427



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 4/228 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++  E M      P   TYN  I++ C A    +A DLF+ M+ +      P   TY  +
Sbjct: 30  LEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRV--EPDRWTYNTL 87

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L  +   E    LL  M +     +V TY  +++ +    K EE+YK LEEM   G 
Sbjct: 88  ISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGC 147

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  ++    + N ++A  +Y  M+E G  P   +Y++LI    ++G+ D + +
Sbjct: 148 NPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLK 207

Query: 399 TWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              EM  R  G   +V T+  +I GL    ++E+A  +   ++  G K
Sbjct: 208 ILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCK 255



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 19/288 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNIL---- 217
           Y   ++   +P+  + ++L+  L K G +D +  I   +  +     PN  T++ L    
Sbjct: 174 YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGL 233

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    ++    M++ G  P+ +TY T I   C+A  V +A +LFE M         
Sbjct: 234 CRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMT---QACIP 290

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           P A  Y  +I    +   M+E   L   M   +G  P + T+  +++G C  GK+  A +
Sbjct: 291 PDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANE 350

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            + EMG KG   D  TY   +  L      DEAL +Y +M E        +    +    
Sbjct: 351 LVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLC 410

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           + G  D A+  +    K G   + +T+ ++ + L    +VE+A  L+E
Sbjct: 411 KTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 152/374 (40%), Gaps = 34/374 (9%)

Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ---------YTEK 168
           YN +I  L S+       +L+  M D     N VF    ++  ++K+           E 
Sbjct: 84  YNTLISGLCSSGNTEGARKLLSEMRDKNIAAN-VFTYSSIIKSLVKEAKPEESYKVLEEM 142

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           +     P++ A N ++    +   ++ A  + +  V++  KP+  +Y+IL          
Sbjct: 143 MAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKL 202

Query: 218 --GMQTLEEMI--QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
              ++ L EM     G+ P+  T++T I   C+   + +A ++F  M   G     P   
Sbjct: 203 DESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGC---KPNKY 259

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  +I  L + +++ +   L   M  +   PD   Y  ++ G C  G ++EA K   EM
Sbjct: 260 TYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 319

Query: 334 -GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
            G  G  P IVT+N  +   C       A  L   M   G      TY +LI+      +
Sbjct: 320 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATK 379

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP----YR 448
            D A E + +M ++    D  +    + GL     +++A + + E   K   +P    +R
Sbjct: 380 LDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA-YAVFEATRKSGAVPNPETFR 438

Query: 449 KFDSYLMQLSVIGD 462
                L++L  + D
Sbjct: 439 ILSESLIKLGRVED 452



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            Y+  + +  KA M+ +A ++FE M+++      P+  TY ++I +        +   L 
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCV---PSLVTYNVLINSRCNAGEFGKALDLF 68

Query: 296 GHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
             M     + PD  TY  ++ G+C +G  E A K L EM +K    ++ TY+  +K L  
Sbjct: 69  QSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVK 128

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
               +E+ ++   M+  GC P V  +N ++  +      + A E +  M + G   D  +
Sbjct: 129 EAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVS 188

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVV 439
           Y ++I GL    K++E+  +L E+ 
Sbjct: 189 YHILIHGLAKIGKLDESLKILSEMA 213



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 1/201 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  ++ +L +   + +   +   M +  C+P + TY  ++   C AG+  +A    + M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 334 GN-KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
              K   PD  TYN  +  LC + N + A +L   M +     +V TY+ +I    +  +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
           P+ +++   EM   GC  DV  +  ++ G    + +E+A  + + +V  G K     +  
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 453 YLMQLSVIGDLGAIHKLSDHM 473
            +  L+ IG L    K+   M
Sbjct: 192 LIHGLAKIGKLDESLKILSEM 212



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M  + C      Y  V++ +  AG + +A +  E M ++   P +VTYN  +   C+   
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 358 GDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +AL L+  M  E    P   TYN LIS     G  +GA +   EM  +  A +V TY 
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RK 475
            +I  L   +K EE+  +LEE++  G       F+  +   +   ++    ++  HM   
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 476 FYNP 479
            Y P
Sbjct: 181 GYKP 184


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 137/295 (46%), Gaps = 13/295 (4%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GMQTLEE------ 224
           +P++   N L+  LCK G +D A+ +   + ++    N  TYN L  G+ +         
Sbjct: 86  KPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVL 145

Query: 225 -MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M  M   PD  TYN  I  FCK+  +  A    E M+ +     SP   TY+I+I  L 
Sbjct: 146 VMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG--CSPDTFTYSILINGLC 203

Query: 284 QNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           ++  + +   LL  MI    C   V  +  +++G C A  ++ A + L  M   G  PD+
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY+  +  LC   + D+   L  +M+  GC P V TY +L++   + G+   A      
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           M + GC  +  TY ++ DGL    K++ A  LL  + +KG       F++ L+ +
Sbjct: 324 MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLSV 378



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 124/272 (45%), Gaps = 30/272 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P  +  N  + ALCK G V               P A       M+ ++ M      PD 
Sbjct: 52  PTPSMYNFFVHALCKSGKV---------------PEA-------MEVVKNMKDGACKPDV 89

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            T+NT I   CKA  + EA  + + M   G    +    TY  +I  L    R  E   +
Sbjct: 90  VTFNTLIAGLCKAGRLDEAQQVLDEMERSG---FAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLC 353
           +  M  +   PD  TY  ++ G C +G+++ AY FLEEM  + G  PD  TY+  +  LC
Sbjct: 147 MQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 354 DNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
            + N  +A  L   MI    C  SV  +N L+  Y +  + D A E    M + GCA DV
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            TY  +IDGL  C  V++   LLE++V++G K
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCK 295



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           DN+TY   +   C A  +  A DL   M  +     +PT   Y   + AL ++ ++ E  
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGM--APTPSMYNFFVHALCKSGKVPEAM 74

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
            ++ +M +  C PDV T+  ++ G+C AG+++EA + L+EM   G+  ++VTYN  +  L
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQD 411
                  EA+ +   M      P  QTYN +I  + + GE D A+    EM +R GC+ D
Sbjct: 135 SSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
             TY ++I+GL   S + +A  LL+E++ +
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGR 221



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 36/162 (22%)

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEAL 362
           L D  TY  ++   CLAG+++ A   L EM  + G  P    YN F+  LC +       
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKS------- 67

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              G++ E                         A E    M    C  DV T+  +I GL
Sbjct: 68  ---GKVPE-------------------------AMEVVKNMKDGACKPDVVTFNTLIAGL 99

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
               +++EA  +L+E+   G       +++ +  LS  G  G
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSG 141


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 151/338 (44%), Gaps = 51/338 (15%)

Query: 147 RNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL-VDYAETICKRVKN 205
           RN K+     VL        E ++   +P I + N+++D LC+  + +D    +   V N
Sbjct: 340 RNGKLLEGRSVL-------DEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSN 392

Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            V P+  TY  L                L EMI+ G  P+ +T NT +++  K    +EA
Sbjct: 393 GVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEA 452

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC---------- 303
            ++ + M  K   + + T     I++  L +N  +E+   ++  M   G           
Sbjct: 453 EEMLQKMNEKSYQLDTVTCN---IVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVA 509

Query: 304 ------------LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
                       +PDV TY  ++ G+C  GK+EEA K   EM  K   PD VTY+ F+  
Sbjct: 510 GLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLN 569

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW---HEMDKRGC 408
            C       ALR+   M   GC  ++QTYN LI     LG     FE +    EM +RG 
Sbjct: 570 FCKQGKISSALRVLKDMERNGCSKTLQTYNSLI---LGLGSKGQIFEMYGLMDEMRERGI 626

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
             D+ TY  MI+ L +  K ++A  LL E+++KG+  P
Sbjct: 627 HPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSP 664



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 137/328 (41%), Gaps = 47/328 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           YT+ I+    PE    NLL+ +LC+   +D+A  +  ++  K  +PN  T  IL      
Sbjct: 139 YTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCR 198

Query: 218 ---------------------------------------GMQTLEEMIQMGHAPDNFTYN 238
                                                    + +E M + G  PD  T+N
Sbjct: 199 AGRTKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFN 258

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGS-TISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           + I   C+A  V EA+ +F  M+  G   +  P   T+ +M+    Q   MEE  SL+  
Sbjct: 259 SRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVET 318

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M   G    + +Y   L G+   GK+ E    L+EM   G  P+I +YN  +  LC N  
Sbjct: 319 MKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHM 378

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
             +A RL   M+  G +P   TY  L+  Y   G+   A    +EM ++GC  +  T   
Sbjct: 379 MLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNT 438

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           +++ L+   +  EA  +L+++  K  +L
Sbjct: 439 LLNSLWKEGRKSEAEEMLQKMNEKSYQL 466



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 153/327 (46%), Gaps = 29/327 (8%)

Query: 163 KQYTEKIKVKTQPEINAL--NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN---- 215
           KQ  E +  K    +N +  N L+ + CK  + D AE + +R+  K + P+  T+N    
Sbjct: 203 KQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRIS 262

Query: 216 --------ILGMQTLEEMIQMGH----APDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
                       +   +M   G      P+  T+N  +  FC+  M+ EA  L E M+  
Sbjct: 263 ALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKG 322

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G+ +S    ++Y   ++ L++N ++ E  S+L  M+ +G  P++ +Y  V++G+C    +
Sbjct: 323 GNFVS---LESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMM 379

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +A + ++ M + G  PD VTY   L   C      EA  +   MI  GC P+  T N L
Sbjct: 380 LDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTL 439

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           ++  ++ G    A E   +M+++    D  T  ++++GL    ++E+A  ++ E+   G 
Sbjct: 440 LNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGT 499

Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLS 470
                  +S   +  V G + +IH +S
Sbjct: 500 -------NSLGKENPVAGLVNSIHNVS 519



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 145/337 (43%), Gaps = 38/337 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK---NKVKPNANTYNILGM----------Q 220
           +P +   NL+L   C+ G+++ A ++ + +K   N V   +    +LG+           
Sbjct: 290 KPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRS 349

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM++ G  P+ ++YN  +D  C+  M+ +A  L + M + G     P   TY  ++ 
Sbjct: 350 VLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVY---PDTVTYTTLLH 406

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 ++ E  ++L  MI  GC P+  T   +L  +   G+  EA + L++M  K Y  
Sbjct: 407 GYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQL 466

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC----------------------WPSVQ 378
           D VT N  +  LC N   ++A  +   M   G                        P V 
Sbjct: 467 DTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVI 526

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  LI+   ++G+ + A + + EM  +    D  TY   +       K+  A  +L+++
Sbjct: 527 TYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDM 586

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
              G     + ++S ++ L   G +  ++ L D MR+
Sbjct: 587 ERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRE 623



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 140/324 (43%), Gaps = 39/324 (12%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
           P++     L++ LCK G ++ A+                      +   EM+     PD+
Sbjct: 523 PDVITYTTLINGLCKVGKLEEAK----------------------KKFIEMMAKNLHPDS 560

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY+T +  FCK   ++ A  + + M   G    S T +TY  +I+ L    ++ E + L
Sbjct: 561 VTYDTFVLNFCKQGKISSALRVLKDMERNGC---SKTLQTYNSLILGLGSKGQIFEMYGL 617

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLC 353
           +  M   G  PD+ TY  ++  +C  GK ++A   L EM +KG   P++ ++   +K  C
Sbjct: 618 MDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFC 677

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            + +   A  L+   + V C      Y+++ +     G+   A E +    +R       
Sbjct: 678 KSGDFKVACELFDVALSV-CGHKEALYSLMFNELLAGGKLSDAKELFEASLERSLLSKNF 736

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG------DLGAIH 467
            Y  +ID L    ++++A  LL+++++KG    +  F   +  LS  G      +LG I 
Sbjct: 737 MYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCFDHSSFIPVIDGLSKRGNKQQADELGRIM 796

Query: 468 KL------SDHMRKFYNPVIARRL 485
           +L      SD   +  N +  R+L
Sbjct: 797 ELALEDKTSDRTYRNGNSIFRRKL 820



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 37/218 (16%)

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           +Q +R     SL   MI +G  P+  T+  +++ +C +  ++ A +  ++M  KG  P+ 
Sbjct: 127 LQQNRPHYVTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNK 186

Query: 343 VT---------------------------------YNCFLKVLCDNKNGDEALRLYGRMI 369
            T                                 YN  +   C     DEA +L  RM 
Sbjct: 187 FTVGILVRGFCRAGRTKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMT 246

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG----CAQDVDTYCVMIDGLFDC 425
           E G  P V T+N  IS     G+   A   + +M   G       +V T+ +M+ G    
Sbjct: 247 EKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQE 306

Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             +EEA  L+E +   G  +    ++++L+ L   G L
Sbjct: 307 GMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKL 344


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 131/304 (43%), Gaps = 45/304 (14%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------- 217
           ++ ++ K  P +   N L+DA  K G L++  +   + ++  + PN  TYN L       
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---STIS- 268
                  Q    M+     PD  TYNT I+ FCKA+ V +  +LF  M  +G   +T++ 
Sbjct: 359 DRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTY 418

Query: 269 ----------------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
                                        P   TY  ++  L +N ++E+   +  ++  
Sbjct: 419 TTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQK 478

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S   PD+ TY  + EGMC AGKVE+ +     +  KG  PD++ YN  +   C     +E
Sbjct: 479 SKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEE 538

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  L+ +M E G  P   TYN LI  +   G+   + E   EM     A D  TY ++ D
Sbjct: 539 AYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTD 598

Query: 421 GLFD 424
            L D
Sbjct: 599 MLHD 602



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 26/298 (8%)

Query: 167 EKIKVKT-QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           E++ VK  QP++     +++ LCK G  D                      L +  L +M
Sbjct: 194 ERMVVKGCQPDLVTYGAVINGLCKRGEPD----------------------LALNLLNKM 231

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            +     D   Y+T ID+ CK R V +A +LF  M  KG     P   TY+ +I  L   
Sbjct: 232 EKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI---RPDVFTYSSLISCLCNY 288

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R  +   LL  M+     P+V T+  +++     GK+ EA K  +EM  +   P+IVTY
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +   C +   DEA +++  M+   C P V TYN LI+ + +  +     E + +M +
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           RG   +  TY  +I G F  S  + A  + +++V+ G+      +++ L  L   G L
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 466



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 16/288 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           K K + ++   + ++D+LCK   VD A  +   + NK ++P+  TY+ L           
Sbjct: 233 KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWS 292

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              + L +M++    P+  T+N+ ID F K   + EA  LF+ M  +      P   TY 
Sbjct: 293 DASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI---DPNIVTYN 349

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            +I     +DR++E   +   M++  CLPDV TY  ++ G C A KV +  +   +M  +
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G   + VTY   +       + D A  ++ +M+  G  P++ TYN L+    + G+ + A
Sbjct: 410 GLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
              +  + K     D+ TY +M +G+    KVE+   L   +  KG+K
Sbjct: 470 MVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK 517



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
           + E +K +  P I   + LL A+ K    D   +  ++++   V  N  TYNI+      
Sbjct: 53  FGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCR 112

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L +M+++G+ P   T N+ ++ FC    ++EA  L + M   G     P 
Sbjct: 113 RSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY---QPD 169

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+  ++  L Q+++  E  +L+  M+  GC PD+ TY  V+ G+C  G+ + A   L 
Sbjct: 170 TVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLN 229

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M       D+V Y+  +  LC  ++ D+AL L+  M   G  P V TY+ LIS     G
Sbjct: 230 KMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 289

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
               A     +M +R    +V T+  +ID      K+ EA  L +E++ + +
Sbjct: 290 RWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY IMI  L +  ++    ++LG M+  G  P + T   +L G C   ++ EA   +++M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              GY PD VT+   +  L  +    EA+ L  RM+  GC P + TY  +I+   + GEP
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           D A    ++M+K     DV  Y  +ID L     V++A  L  E+ NKG++     + S 
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281

Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           +  L   G    A   LSD + +  NP
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINP 308



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 3/251 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E+M  +G + + +TYN  I+  C+   ++ A  +   M   G     P+  T   ++   
Sbjct: 89  EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGY---GPSIVTLNSLLNGF 145

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
              +R+ E  +L+  M+  G  PD  T+  ++ G+    K  EA   +E M  KG  PD+
Sbjct: 146 CHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 205

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC     D AL L  +M +      V  Y+ +I    +    D A   + E
Sbjct: 206 VTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           MD +G   DV TY  +I  L +  +  +A  LL +++ + +      F+S +   +  G 
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325

Query: 463 LGAIHKLSDHM 473
           L    KL D M
Sbjct: 326 LIEAEKLFDEM 336



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 74/156 (47%)

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +++E   L G M+ S   P +  + ++L  +    K +    F E+M   G   ++ TYN
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC       AL + G+M+++G  PS+ T N L++ +        A     +M + 
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G   D  T+  ++ GLF  +K  EA  L+E +V KG
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 200



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 28/197 (14%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
           M+ KQ    +     P I   N LLD LCK G ++ A                      M
Sbjct: 436 MVFKQM---VSDGVHPNIMTYNTLLDGLCKNGKLEKA----------------------M 470

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
              E + +    PD +TYN   +  CKA  V +  DLF  +  KG     P    Y  MI
Sbjct: 471 VVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGV---KPDVIAYNTMI 527

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
               +    EE ++L   M   G LPD  TY  ++      G    + + ++EM +  + 
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587

Query: 340 PDIVTYNCFLKVLCDNK 356
            D  TY     +L D +
Sbjct: 588 GDASTYGLVTDMLHDGR 604


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 156/339 (46%), Gaps = 36/339 (10%)

Query: 135 FRLVCSMLDYMKRNNKVFVPVDVLLMILKQY-----TEKI---------KVKTQPEINAL 180
           FR +  +L  MKR  +VF+  + ++M  K Y      EK          + + +  + + 
Sbjct: 77  FRSLEEVLHQMKRERRVFLEKNFIVM-FKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSF 135

Query: 181 NLLLDALCKCGLVD-----YAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
           N +L+ + + GL +     Y   +  +  N + PNA T+N++             ++   
Sbjct: 136 NSVLNVIVQEGLFNRALEFYNHVVASKSLN-IHPNALTFNLVIKAMCRLGLVDKAIEVFR 194

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           E+     APDN+TY+T +   CK   + EA  L + M+ +G+    P    + ++I AL 
Sbjct: 195 EIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTF---PNLVAFNVLISALC 251

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +   +     L+ +M   GC+P+  TY  ++ G+CL GK+E+A   L +M +    P+ V
Sbjct: 252 KKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDV 311

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           T+   +          +  R+   +   G   +   Y+ LIS   + G+ + A E W EM
Sbjct: 312 TFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEM 371

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             +GC  +   Y  +IDGL    K++EA   L E+ NKG
Sbjct: 372 VGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKG 410



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 16/283 (5%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GM 219
           T P + A N+L+ ALCK G +  A  +   +  K   PN  TYN L             +
Sbjct: 236 TFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAV 295

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
             L +M+     P++ T+ T I+ F      ++   +   +  +G          Y+ +I
Sbjct: 296 SLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGH---RGNEYVYSSLI 352

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L +  +  +   L   M+  GC P+   Y  +++G+C  GK++EA  FL EM NKGY 
Sbjct: 353 SGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYL 412

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P+  TY+  ++   +  +  +A+ ++  M    C  +   Y++LI+   + G+   A   
Sbjct: 413 PNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMV 472

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           W +M  RG   DV  Y  MI G  + + VE+   L  +++ +G
Sbjct: 473 WKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQG 515



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%)

Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT--- 274
            M+  +EM+  G  P+   Y+  ID  C+   + EA      M+ KG   +S T  +   
Sbjct: 364 AMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMR 423

Query: 275 -----------------------------YAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
                                        Y+I+I  L ++ +  E   +   M++ G   
Sbjct: 424 GYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKL 483

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG--YPPDIVTYNCFLKVLCDNKNGDEALR 363
           DV  Y  ++ G C A  VE+  K   +M  +G    PD++TYN  L   C  K+   A+ 
Sbjct: 484 DVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAID 543

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
           +   M++ GC P   T ++ +    E   P
Sbjct: 544 ILNIMLDQGCDPDFITCDIFLKTLRENMNP 573



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 18/208 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E +     P     + L+D LC+ G +D A      +KNK   PN+ TY+ L      
Sbjct: 368 WKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFE 427

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +   +EM       +   Y+  I+  CK     EA  +++ M ++G  +    
Sbjct: 428 AGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLD--- 484

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCL--PDVSTYKEVLEGMCLAGKVEEAYKF 329
              Y+ MI      + +E+   L   M+  G +  PDV TY  +L   C+   +  A   
Sbjct: 485 VVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDI 544

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           L  M ++G  PD +T + FLK L +N N
Sbjct: 545 LNIMLDQGCDPDFITCDIFLKTLRENMN 572



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMI---EVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           + ++N  L V+      + AL  Y  ++    +   P+  T+N++I     LG  D A E
Sbjct: 132 VKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIE 191

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            + E+  R CA D  TY  ++ GL    +++EA  LL+E+  +G       F+  +  L 
Sbjct: 192 VFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALC 251

Query: 459 VIGDLGAIHKLSDHM 473
             GDLG   KL D+M
Sbjct: 252 KKGDLGRAAKLVDNM 266


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 176/405 (43%), Gaps = 39/405 (9%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVDV 157
           N    PL +    D+L  T  +A++ R  C     +K                  V V  
Sbjct: 179 NCGSNPLVF----DLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGW 234

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           + +  + Y E ++   Q  +  LN++++ALCK   ++  ++    ++ K V P+  TYN 
Sbjct: 235 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 294

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L              + ++ M   G  P  FTYN  I+  CK      A  + + M   G
Sbjct: 295 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 354

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP   TY I++V   +ND M +   +   M + G +PD+ ++  ++  +   G ++
Sbjct: 355 ---MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +A K+  +M N G  PD V Y   +   C N    EAL++   M+E GC   V TYN ++
Sbjct: 412 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 471

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   +      A E + EM +RG   D  T+  +I+G      + +A  L E ++ + LK
Sbjct: 472 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 531

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489
                +++ +       ++  +++L       +N +I+RR+  N 
Sbjct: 532 PDVVTYNTLIDGFCKGSEMEKVNEL-------WNDMISRRIYPNH 569



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 45/315 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L++A C+ GL++ A  +   +  K +KP   TYN +                
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
           L+EM+++G +PD  TYN  +   C+   + +A  +F+ M ++G                 
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 269 -------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                              +P    Y I+I    +N  M E   +   M+  GC+ DV T
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 466

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +L G+C    + EA +   EM  +G  PD  T+   +     + N ++A+ L+  MI
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 526

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           +    P V TYN LI  + +  E +   E W++M  R    +  +Y ++I+G  +   V 
Sbjct: 527 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 586

Query: 430 EACFLLEEVVNKGLK 444
           EA  L +E+V KG +
Sbjct: 587 EAFRLWDEMVEKGFE 601



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 51/347 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++ + + L+  L K G +D A    + +KN  + P+   Y IL             ++ 
Sbjct: 392 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 451

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM++ G   D  TYNT ++  CK +M++EA +LF  M  +G     P   T+  +I  
Sbjct: 452 RDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF---PDFYTFTTLING 508

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA--------------------- 320
             ++  M +  +L   MI     PDV TY  +++G C                       
Sbjct: 509 YSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 568

Query: 321 --------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                         G V EA++  +EM  KG+   I+T N  +K  C   N  +A     
Sbjct: 569 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 628

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+  G  P   TYN LI+ + +    D AF   ++M+  G   DV TY V+++G     
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 688

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +++EA  ++ +++ +G+      + S +       +L    ++ D M
Sbjct: 689 RMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 735



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 128/283 (45%), Gaps = 17/283 (6%)

Query: 181 NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N +L+ LCK  ++  A E   +  +  V P+  T+  L             +   E MIQ
Sbjct: 468 NTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQ 527

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  TYNT ID FCK   + +  +L+  M ++      P   +Y I+I        
Sbjct: 528 RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY---PNHISYGILINGYCNMGC 584

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E F L   M+  G    + T   +++G C AG   +A +FL  M  KG  PD +TYN 
Sbjct: 585 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 644

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +      +N D A  L  +M   G  P V TYN++++ +   G    A     +M +RG
Sbjct: 645 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 704

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
              D  TY  +I+G    + ++EA  + +E++ +G  +P  KF
Sbjct: 705 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF-VPDDKF 746


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 156/342 (45%), Gaps = 45/342 (13%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL-------- 217
           E +    +P I + N ++D LCK GL+  A  I    + + + P+  TY+ L        
Sbjct: 355 EMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTG 414

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                   L EM++ G +P+ +T N  + +  K   + EA  L + M  +   + + T  
Sbjct: 415 KVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCN 474

Query: 274 TYAIMIVALVQNDRMEECFSL-----------LGHMINS------------GCLPDVSTY 310
              I+I  L ++ +++E   +           LG++ NS             CLPD+ TY
Sbjct: 475 ---IVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITY 531

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             ++ G+C AG+++EA K   EM  K   PD + Y+ F+   C +     A R+   M +
Sbjct: 532 SIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEK 591

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETW---HEMDKRGCAQDVDTYCVMIDGLFDCSK 427
            GC  S+QTYN LI     LG  +  FE +    +M ++G   ++ TY  MI  L +  +
Sbjct: 592 RGCNKSLQTYNSLI---LGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGR 648

Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           +++A  LL+E++ KG+      F   +       D G + ++
Sbjct: 649 IKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEV 690



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 139/323 (43%), Gaps = 49/323 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           Y + +     PE   LNLL+  LC  G  + A  +  ++  K  +PN  ++ IL      
Sbjct: 139 YKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCR 198

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------- 264
                  ++ L+ M   G  P+   YNT I +FC+     EA  L E MR  G       
Sbjct: 199 AGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVT 258

Query: 265 --STISS---------------------------PTAKTYAIMIVALVQNDRMEECFSLL 295
             S IS+                           P   T+ +M+    +   +EE  +L+
Sbjct: 259 FNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLV 318

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M  +G L ++ +Y   L G+   GK+ EA   L+EM +KG  P+I ++N  +  LC N
Sbjct: 319 ESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKN 378

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
               +A  + G MI  G  P   TY+ L+      G+   A    HEM +RGC+ +  T 
Sbjct: 379 GLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTC 438

Query: 416 CVMIDGLFDCSKVEEACFLLEEV 438
            +++  L+   ++ EA  LL+++
Sbjct: 439 NILLHSLWKEGRIFEAEKLLQKM 461



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 136/280 (48%), Gaps = 20/280 (7%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN-----------ILGMQT 221
           QP     N L+ + C+ G  + AE + +R++ + + P+  T+N           IL    
Sbjct: 218 QPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASR 277

Query: 222 LEEMIQMGHA-----PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           +   +Q+        P+  T+N  ++ FCK  M+ EA  L E M+  G+ +     ++Y 
Sbjct: 278 IFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLME---LESYN 334

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           I ++ LV+N ++ E    L  M++ G  P++ ++  V++G+C  G + +A   +  M + 
Sbjct: 335 IWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISS 394

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD VTY+  L   C      +A  +   M+  GC P+  T N+L+   ++ G    A
Sbjct: 395 GIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEA 454

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
            +   +M++R    D  T  ++IDGL    K++EA  ++E
Sbjct: 455 EKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVE 494



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 151/338 (44%), Gaps = 39/338 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNI--LGM----------Q 220
           +P I   NL+L+  CK G+++ A+T+ + +K N       +YNI  LG+           
Sbjct: 292 RPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQL 351

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+EM+  G  P+ +++NT +D  CK  ++++A  +   M + G     P   TY+ ++ 
Sbjct: 352 ALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGI---GPDTVTYSTLLH 408

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 ++ +  ++L  M+  GC P+  T   +L  +   G++ EA K L++M  + Y  
Sbjct: 409 GCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDL 468

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-----------------------CWPSV 377
           D VT N  +  LC +   DEA+ +   M   G                       C P +
Sbjct: 469 DNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDL 528

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            TY+++I+   + G  D A + + EM  +    D   Y   I       K+  A  +L++
Sbjct: 529 ITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKD 588

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           +  +G     + ++S ++ L     +  I+ L D M++
Sbjct: 589 MEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKE 626



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 22/295 (7%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT---YNILGMQTLEE----------- 224
           +L  L+  L K GL D A +  +  +++V  N      YN++   +L E           
Sbjct: 81  SLIALIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLESSLREDKVDSFSWLYK 140

Query: 225 -MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            M+  G +P+ +T N  I   C +    +A ++F+ M  KG     P   ++ I++    
Sbjct: 141 DMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGC---RPNEFSFGILVRGYC 197

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +         LL  M + G  P+   Y  ++   C  G+ EEA + +E M   G  PD+V
Sbjct: 198 RAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVV 257

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMI---EVGC-WPSVQTYNMLISMYFELGEPDGAFET 399
           T+N  +  LC      EA R++  M    E+G   P++ T+N+++  + + G  + A   
Sbjct: 258 TFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTL 317

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
              M + G   ++++Y + + GL    K+ EA   L+E+V+KG++     F++ +
Sbjct: 318 VESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVM 372



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 126/303 (41%), Gaps = 59/303 (19%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231
           K  P++   +++++ LCK G +D A                       +   EM+     
Sbjct: 523 KCLPDLITYSIIINGLCKAGRLDEAR----------------------KKFIEMVGKSLH 560

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           PD+  Y+T I +FCK   ++ A  + + M  +G    + + +TY  +I+ L   +++ E 
Sbjct: 561 PDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGC---NKSLQTYNSLILGLGSKNQIFEI 617

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           + LL  M   G  P++ TY  ++  +C  G++++A   L+EM  KG  P+I ++   +K 
Sbjct: 618 YGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKA 677

Query: 352 -------------------LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
                              +C +K    +L     +I      + + ++  +   F+LG 
Sbjct: 678 FCKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGN 737

Query: 393 ---------------PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
                           + A +  H+M  +G   D  ++  +IDGL    K  +A  L E 
Sbjct: 738 FQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAER 797

Query: 438 VVN 440
           +++
Sbjct: 798 MMD 800



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 16/177 (9%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + PN  TYN +                L+EM+Q G +P+  ++   I  FCKA       
Sbjct: 629 ITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVK 688

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           ++FE       +I       Y++M   L+    + E   L    ++         Y +++
Sbjct: 689 EVFEI----ALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLI 744

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
           E +C    +E A   L +M +KGY  D  ++   +  L       +A  L  RM+++
Sbjct: 745 EKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAERMMDM 801


>gi|359487102|ref|XP_002274044.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 390

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 151/348 (43%), Gaps = 41/348 (11%)

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           K A  FF W   Q  + H    YN MIDIL     K  +F L+  ++  MK +   +   
Sbjct: 69  KRALEFFDWVQTQCGFNHTTDTYNGMIDILG----KFFEFDLIWVLIQRMKADPVAYPNH 124

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
                + K+Y            + +  +L    K G        C+              
Sbjct: 125 VTFRFVFKRYAAA---------HLVEEILRGWFKMGWWKK----CR-------------- 157

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               +  EEM + G     ++Y+  +D  CK+     A  L++ M+ KG  +       Y
Sbjct: 158 ----EFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLD---VVAY 210

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I A+  ++ ++    +   M   GC P+V TY  +++ +C  G++ EAY   ++M  
Sbjct: 211 NTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMRE 270

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KGY P+++TY+CF   +   K   + LR + RMI  G  P + TY ML+  +   G    
Sbjct: 271 KGYAPNVITYHCFFGCIEKPK---QILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRP 327

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            F  W +M+++GC+ D   Y  +ID L     V+ A    EE++ KGL
Sbjct: 328 VFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEMLAKGL 375



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 37/264 (14%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF-------MRTKGSTISSPTAKTYAIMI 279
           Q G      TYN  ID   K          FEF        R K   ++ P   T+  + 
Sbjct: 81  QCGFNHTTDTYNGMIDILGK---------FFEFDLIWVLIQRMKADPVAYPNHVTFRFVF 131

Query: 280 VALVQNDRMEE-------------CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
                   +EE             C      M   G    + +Y   ++  C +GK   A
Sbjct: 132 KRYAAAHLVEEILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRA 191

Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
            K  +EM  KG   D+V YN  ++ +  ++  D ++R++  M EVGC P+V TYN +I +
Sbjct: 192 VKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKL 251

Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC-SKVEEACFLLEEVVNKGLKL 445
             E G    A+  + +M ++G A +V TY       F C  K ++     + ++N G++ 
Sbjct: 252 LCENGRIREAYGVFDQMREKGYAPNVITY----HCFFGCIEKPKQILRTFDRMINSGVR- 306

Query: 446 PYRKFDSYLMQLSVIGDLGAIHKL 469
              + D+Y+M +   G  G +  +
Sbjct: 307 --PRMDTYVMLMKKFGRWGFLRPV 328


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 158/334 (47%), Gaps = 31/334 (9%)

Query: 141  MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
            ++ ++ ++ K     +V L + K +         P + A N L+D L K  L + A  + 
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFC------ITPSLEAYNSLIDGLLKARLTEMAWGLF 811

Query: 201  KRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
             ++KN                       G  PD FTYN  +D   K+  + E  DL+E M
Sbjct: 812  YKMKNA----------------------GCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 261  RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
              +G     P   T+ I+I  LV+++ +++   L   +++    P   TY  +++G+   
Sbjct: 850  LFRGC---KPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL 906

Query: 321  GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
            G++EEA +F EEM + G  P+   YN  +       + + A  L+ RM++ G  P +++Y
Sbjct: 907  GRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966

Query: 381  NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
            ++++     +G+ D A   + E+   G   D+  Y +MI+GL    +VEEA  L +E+ N
Sbjct: 967  SIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRN 1026

Query: 441  KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
            +G+      +++ ++ L + G +    K+ + ++
Sbjct: 1027 RGITPDLYTYNALILNLGIAGMVEEAGKMYEELQ 1060



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE+M ++G   + ++Y   I    K+    EA  ++  M ++G     P+ KTY+ ++V
Sbjct: 179 ALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGI---KPSLKTYSALMV 235

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL +   +E    LL  M + G  P++ T+   +  +  AGK++EAY  L+ M + G  P
Sbjct: 236 ALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGP 295

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+VTY   +  LC+    + A  L+ +M      P   TY  L+  + + G+ D   E W
Sbjct: 296 DVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFW 355

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            EM+  G   DV T+ ++ID L    KV+EA   L+ +  +G+
Sbjct: 356 SEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGV 398



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 203 VKNKVKPNANTYNILGMQTLEE-------MIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
           V N V  NA+ Y++     LEE       + + G APD  TYN  +  + KA  V +A  
Sbjct: 469 VPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIK 528

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L   M   G     P       +I  L + DR++E + +   M      P V TY  +L 
Sbjct: 529 LLSEMEENGC---DPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLA 585

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G+   G+V+EA    + M     PP+ +++N  L  LC N   D AL++  RM E+ C+P
Sbjct: 586 GLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFP 645

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            V TYN +I    +    + AF  +H+M K+    D  T C ++ G+    ++E+A  + 
Sbjct: 646 DVLTYNTVIYGLIKENRVNYAFWLFHQM-KKVIYPDYVTLCTLLPGVIKDGRIEDAFRVA 704

Query: 436 EEVVN 440
           +E V+
Sbjct: 705 KEFVH 709



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 131/309 (42%), Gaps = 45/309 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++    +L+DALCK G VD A  T+    K  V PN +TYN L             ++ 
Sbjct: 365 PDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALEL 424

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
              M  +G     +TY   ID + K+    +A   FE M+T G   +             
Sbjct: 425 FNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAE 484

Query: 269 -------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                              +P A TY I++    +  R+++   LL  M  +GC P+V  
Sbjct: 485 QGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVI 544

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
              +++ +  A +V+EA+K  + M      P +VTYN  L  L       EA  L+  MI
Sbjct: 545 INSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
              C P+  ++N L+    + GE D A +    M +  C  DV TY  +I GL   ++V 
Sbjct: 605 ADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVN 664

Query: 430 EACFLLEEV 438
            A +L  ++
Sbjct: 665 YAFWLFHQM 673



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 125/270 (46%), Gaps = 16/270 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILG------------MQT 221
           P++    +L+DALC  G ++ A+ +  ++K +  KP+  TY  L              + 
Sbjct: 295 PDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEF 354

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G+ PD  T+   ID  CK   V EA    + M+ +G    +P   TY  +I  
Sbjct: 355 WSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGV---APNLHTYNTLICG 411

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L++ +R++E   L   M + G      TY   ++    +G+  +A K  E+M   G  P+
Sbjct: 412 LLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPN 471

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IV  N  L  L +    +EA   +  + + G  P   TYN+L+  Y + G  D A +   
Sbjct: 472 IVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLS 531

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           EM++ GC  +V     +ID L+   +V+EA
Sbjct: 532 EMEENGCDPEVVIINSLIDTLYKADRVDEA 561



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 22/263 (8%)

Query: 175  PEINALNLLLDALCKCG----LVDYAETICKRVKNKVKPNANTYNIL--GM---QTLEEM 225
            P++   NL LDAL K G    L D  E +  R     KPN  T+NI+  G+    +L++ 
Sbjct: 821  PDVFTYNLFLDALGKSGKIKELFDLYEEMLFR---GCKPNTITHNIVIFGLVKSNSLDKA 877

Query: 226  IQMGH-------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            I + +       +P  +TY   ID   K   + EA   FE M   G     P    Y I+
Sbjct: 878  IDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCM---PNCPLYNIL 934

Query: 279  IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
            +    +   +E    L   M+  G  PD+ +Y  +++ +C+ GKV++A  + EE+   G 
Sbjct: 935  MNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGL 994

Query: 339  PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             PD+V YN  +  L  ++  +EAL L+  M   G  P + TYN LI      G  + A +
Sbjct: 995  DPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGK 1054

Query: 399  TWHEMDKRGCAQDVDTYCVMIDG 421
             + E+  +G   +V TY  +I G
Sbjct: 1055 MYEELQLKGLEPNVFTYNALIRG 1077



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 127/289 (43%), Gaps = 24/289 (8%)

Query: 116  LAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVF--VPVDVLLMILKQYTE 167
              YNL +D L  +    + F L   ML      + +  N  +F  V  + L   +  Y +
Sbjct: 824  FTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYD 883

Query: 168  KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--------- 217
             +     P       L+D L K G ++ A+   + + +    PN   YNIL         
Sbjct: 884  LMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGD 943

Query: 218  ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
                 +    M++ G  PD  +Y+  +D  C    V +A   FE ++  G     P    
Sbjct: 944  VETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGL---DPDLVC 1000

Query: 275  YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
            Y +MI  L ++ R+EE  SL   M N G  PD+ TY  ++  + +AG VEEA K  EE+ 
Sbjct: 1001 YNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQ 1060

Query: 335  NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
             KG  P++ TYN  ++    + N D A  +Y +M+  GC P+  T+  L
Sbjct: 1061 LKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++    M+  G  P   TY+  +    K R +     L + M + G     P   T+ I 
Sbjct: 212 LKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGL---RPNIYTFTIC 268

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  +++E + +L  M ++GC PDV TY  +++ +C AGK+  A +   +M    +
Sbjct: 269 IRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSH 328

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD VTY   L    D+ + D     +  M   G  P V T+ +LI    ++G+ D AF 
Sbjct: 329 KPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFG 388

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           T   M K+G A ++ TY  +I GL   ++++EA  L   + + GL+     +  ++    
Sbjct: 389 TLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYG 448

Query: 459 VIGDLGAIHKLSDHMRKFYNPVIARRLALN 488
             G+ G   K  + M+   N ++   +A N
Sbjct: 449 KSGESGKAIKTFEKMKT--NGIVPNIVACN 476



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 3/196 (1%)

Query: 220  QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            Q  EEM+  G  P+   YN  ++ F K   V  A +LF  M  +G     P  K+Y+IM+
Sbjct: 914  QFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGI---RPDLKSYSIMV 970

Query: 280  VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
              L    ++++       +  SG  PD+  Y  ++ G+  + +VEEA    +EM N+G  
Sbjct: 971  DCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGIT 1030

Query: 340  PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            PD+ TYN  +  L      +EA ++Y  +   G  P+V TYN LI  +   G PD A+  
Sbjct: 1031 PDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAV 1090

Query: 400  WHEMDKRGCAQDVDTY 415
            + +M   GC  +  T+
Sbjct: 1091 YKKMMVGGCRPNTGTF 1106



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 165/375 (44%), Gaps = 54/375 (14%)

Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
           ++LD + +N +V    D+ L +L + TE   +   P++   N ++  L K   V+YA  +
Sbjct: 617 TLLDCLCKNGEV----DLALKMLFRMTE---MNCFPDVLTYNTVIYGLIKENRVNYAFWL 669

Query: 200 CKRVKNKVKPNANTY-----NILGMQTLEEMIQMG-----HAPDN--------------- 234
             ++K  + P+  T       ++    +E+  ++      H  D+               
Sbjct: 670 FHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILI 729

Query: 235 ---------FTYNTAIDTFCKARMV-----------TEAADLFE-FMRTKGSTISSPTAK 273
                    F  +   +T C+   V            +A D +  F++   S   +P+ +
Sbjct: 730 EAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLE 789

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  +I  L++    E  + L   M N+GC PDV TY   L+ +  +GK++E +   EEM
Sbjct: 790 AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  P+ +T+N  +  L  + + D+A+ LY  ++     P+  TY  LI    +LG  
Sbjct: 850 LFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRL 909

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A + + EM   GC  +   Y ++++G      VE AC L   +V +G++   + +   
Sbjct: 910 EEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIM 969

Query: 454 LMQLSVIGDL-GAIH 467
           +  L ++G +  A+H
Sbjct: 970 VDCLCMVGKVDDALH 984



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 54/320 (16%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
           PE+  +N L+D L K   VD A  + +R+K  K+ P   TYN L                
Sbjct: 540 PEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATAL 599

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            + MI     P+  ++NT +D  CK   V  A  +  F  T+ +    P   TY  +I  
Sbjct: 600 FKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKML-FRMTEMNCF--PDVLTYNTVIYG 656

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE--------- 332
           L++ +R+   F L  H +     PD  T   +L G+   G++E+A++  +E         
Sbjct: 657 LIKENRVNYAFWLF-HQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHA 715

Query: 333 --------MGNKGYPPDIVTYNCF-------------------LKVLCDNKNGDEALRLY 365
                   MG      +I     F                   +K LC +    +A  ++
Sbjct: 716 DGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVF 775

Query: 366 GRMIEVGC-WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
            ++ +  C  PS++ YN LI    +    + A+  +++M   GC  DV TY + +D L  
Sbjct: 776 LKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGK 835

Query: 425 CSKVEEACFLLEEVVNKGLK 444
             K++E   L EE++ +G K
Sbjct: 836 SGKIKELFDLYEEMLFRGCK 855



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 5/254 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
            ++ EM ++ H  +  T N  ++     R V +   +F  M+ +   I   +  TY  + 
Sbjct: 110 NSVAEMPRVIHTTE--TCNYVLEMLRAHRRVEDMVVVFNLMQKQ---IIKRSINTYLTIF 164

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L     + E    L  M   G + +  +Y  ++  +  +G   EA K    M ++G  
Sbjct: 165 KVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIK 224

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P + TY+  +  L   ++ +  + L   M  +G  P++ T+ + I +    G+ D A+  
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGI 284

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
              MD  GC  DV TY V+ID L +  K+  A  L  ++     K     + + L + S 
Sbjct: 285 LKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSD 344

Query: 460 IGDLGAIHKLSDHM 473
            GDL AI +    M
Sbjct: 345 HGDLDAIKEFWSEM 358


>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 376

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 15/284 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----- 217
           + Y + ++ K  P+    N +L+   + G +     + + +  +   +  ++NI+     
Sbjct: 11  RVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREGSRSVASFNIMMRGLF 70

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   M   E M + G   D+ TY   +  FCK   + ++  + E    KG  +   
Sbjct: 71  DNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLD-- 128

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
            A  Y+ MI AL +  ++E+  S+L  MI SGC P+   Y  +++G+  A K ++A +  
Sbjct: 129 -AFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIF 187

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EMG    PP+I TY+  +  LC  +   EA  L   M+E G  PSV TY++L+      
Sbjct: 188 REMGTTDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLG 247

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
            + + A + W+++ K+G   DV  + ++I GL    K + A  L
Sbjct: 248 HKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSL 291



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 3/223 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L  MI+ G  P+   YN  I     A    +A  +F   R  G+T   P   TY+I+
Sbjct: 149 VSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIF---REMGTTDCPPNIATYSIL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L + +R  E + L+  M+  G  P V TY  +++G+CL  KVE A +   ++  KG+
Sbjct: 206 IDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ T N L+  +++ G    A  
Sbjct: 266 KPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            W  + K     D+ +Y + + GL  C+++ +A + L + V K
Sbjct: 326 IWARILKNELQPDIISYNITLKGLCSCNRISDAIWFLHDAVRK 368



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +++++   +PD   YN  ++ F +A  + +  +L+E M  +GS     +  ++ IM+  L
Sbjct: 14  KDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREGSR----SVASFNIMMRGL 69

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             N ++EE  S+   M  SG + D  TY  ++ G C  G + ++   LE    KG   D 
Sbjct: 70  FDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDA 129

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
             Y+  +  LC     ++A+ +   MI  GC P+   YN LI       + D A   + E
Sbjct: 130 FAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFRE 189

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M    C  ++ TY ++IDGL    +  EA  L++E++ KGL
Sbjct: 190 MGTTDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGL 230



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 88/179 (49%), Gaps = 7/179 (3%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++ S   PD   Y  +L G   AG++++ ++  E MG +G    + ++N  ++ L DN+ 
Sbjct: 16  IVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREG-SRSVASFNIMMRGLFDNRK 74

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            +EA+ ++  M + G      TY +L+  + + G  + +       +++G   D   Y  
Sbjct: 75  VEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYSA 134

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           MI+ L   SK+E+A  +L  ++  G K P    ++++    + G +GA  K  D +R F
Sbjct: 135 MINALCKESKLEKAVSVLNGMIRSGCK-P----NTHVYNALIKGLIGA-SKRDDAVRIF 187



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  ++E    P    YN +++ ++  G     FE W  M + G ++ V
Sbjct: 1   CESGDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREG-SRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ +M+ GLFD  KVEEA  + E +   G 
Sbjct: 60  ASFNIMMRGLFDNRKVEEAMSIWELMTKSGF 90



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   ++L+D LCK      A  + K +  K + P+  TY++L             +Q 
Sbjct: 197 PNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQL 256

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             ++ + G  PD   +N  I   C       A  L+  M        +P   T   ++  
Sbjct: 257 WNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNC---APNLVTQNTLMEG 313

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++  +     +   ++ +   PD+ +Y   L+G+C   ++ +A  FL +   K   P 
Sbjct: 314 FYKDGNVRNALVIWARILKNELQPDIISYNITLKGLCSCNRISDAIWFLHDAVRKKIIPT 373

Query: 342 IVT 344
            +T
Sbjct: 374 KIT 376



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C +G ++ A +  +++      PD V YN  L          +   L+  M   G   SV
Sbjct: 1   CESGDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREGS-RSV 59

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            ++N+++   F+  + + A   W  M K G  +D  TY +++ G      + ++  +LE 
Sbjct: 60  ASFNIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEI 119

Query: 438 VVNKG 442
              KG
Sbjct: 120 AEQKG 124


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 140/301 (46%), Gaps = 16/301 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTL 222
           ++   N L+  LC+ G VD A  +   +K + V+PN  TY +                  
Sbjct: 208 DVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLY 267

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           EEM++ G  PD  T +  +   CK    +EA  LF  M   G+   +P   TY ++I  L
Sbjct: 268 EEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGA---APNHVTYCMLIDTL 324

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  R  E  SLLG +++ G + D+  Y  +++ +C  GK++EA        +  + P+ 
Sbjct: 325 AKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNG 384

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   +  LC   N D A ++   M E    P+V T++ +I+   + G    A +   E
Sbjct: 385 VTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMRE 444

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M +RG   +V TY  +IDG F C   E A  +  E++ +G+++     DS +  L   G 
Sbjct: 445 MKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGK 504

Query: 463 L 463
           +
Sbjct: 505 I 505



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 166/389 (42%), Gaps = 43/389 (11%)

Query: 84  VVGVLQRFQFEEKIA-FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLV---- 138
           V G+ +  +F E  A FR     G   N+    + Y ++ID L+  +   +   L+    
Sbjct: 286 VGGLCKDGRFSEAYALFREMEKIGAAPNH----VTYCMLIDTLAKAQRGNESLSLLGEVV 341

Query: 139 -----------CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
                       +++D++ +  K+    D+       +   +     P      +L+DAL
Sbjct: 342 SRGVVMDLIMYTALMDWLCKEGKIDEAKDM-------FRHALSDNHTPNGVTYTVLIDAL 394

Query: 188 CKCGLVDYAETICKRVKNK-VKPNANTYNIL----------GMQT--LEEMIQMGHAPDN 234
           CK G VD AE +   ++ K + PN  T++ +          G  T  + EM + G  P+ 
Sbjct: 395 CKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNV 454

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
            TY T ID   K      A D++  M  +G  ++     +   ++  L +N ++E+  +L
Sbjct: 455 VTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDS---LVNGLKKNGKIEKAEAL 511

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              M   G L D   Y  +++G+   G +  A+K  +E+  K   PD V YN F+  LC 
Sbjct: 512 FREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCM 571

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                EA      M   G  P   TYN +I+     G+   A +  + M +     ++ T
Sbjct: 572 LGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLIT 631

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           Y  +I GLF+   VE+A +LL E+ + G 
Sbjct: 632 YSTLIVGLFEAGAVEKAKYLLNEMSSSGF 660



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 1/222 (0%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM + G   D  T NT +   C+   V  AA L E M  +G  I       +  ++  
Sbjct: 125 LAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVM-VRGGGIGGLDVVGWNSLVDG 183

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   ME  F++   M   G   DV  Y  ++ G+C AG+V+ A   ++ M   G  P+
Sbjct: 184 YCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPN 243

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY  F+   C     D+A  LY  M+  G  P V T + L+    + G    A+  + 
Sbjct: 244 VVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFR 303

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM+K G A +  TYC++ID L    +  E+  LL EVV++G+
Sbjct: 304 EMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGV 345



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 142/315 (45%), Gaps = 20/315 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    N+ ++ LC  G    AE+  + +++  +KP+  TYN +             ++ 
Sbjct: 557 PDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKL 616

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  M +    P+  TY+T I    +A  V +A  L   M + G    SPT+ T+  ++ A
Sbjct: 617 LNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGF---SPTSLTHRRVLQA 673

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             Q  R +    +   M+N+G   D++ Y  ++  +C  G   +A   LEEM  +G  PD
Sbjct: 674 CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPD 733

Query: 342 IVTYNCFLKVLCDNKNG--DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            +T+N    +L   K+G  D A   Y +M+  G  P+V T+N L+      G    +   
Sbjct: 734 TITFNAL--ILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMV 791

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
            +EM KRG      TY +++ G    S   EA  L  E+V KG       +++ +   S 
Sbjct: 792 LNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSK 851

Query: 460 IGDLGAIHKLSDHMR 474
           +G +    +L + M+
Sbjct: 852 VGMMSQAKELFNEMQ 866



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 3/225 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++  E M+  G   D   YNT +   C   M  +A  + E M  +G    +P   T+  +
Sbjct: 684 LEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGI---APDTITFNAL 740

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I+   ++  ++  FS    M+  G  P+V+T+  +L G+  AG++ E+   L EM  +G 
Sbjct: 741 ILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGI 800

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            P  +TY+  +       N  EA+RLY  M+  G  P V TYN LIS + ++G    A E
Sbjct: 801 EPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKE 860

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++EM  RG      TY +++ G        E    L+++  KG 
Sbjct: 861 LFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGF 905



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 145/359 (40%), Gaps = 51/359 (14%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------ 217
           Y E ++    P++  L+ L+  LCK G    A  + + + K    PN  TY +L      
Sbjct: 267 YEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAK 326

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  +  L E++  G   D   Y   +D  CK   + EA D+F    +   T   P 
Sbjct: 327 AQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHT---PN 383

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY ++I AL +   ++    +L  M      P+V T+  ++ G+   G V +A  ++ 
Sbjct: 384 GVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMR 443

Query: 332 EMGNKGYPPDIVTYNCFL-----------------KVLCDN----------------KNG 358
           EM  +G  P++VTY   +                 ++LC+                 KNG
Sbjct: 444 EMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNG 503

Query: 359 --DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             ++A  L+  M E G       Y  LI   F+ G    AF+   E+ ++    D   Y 
Sbjct: 504 KIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYN 563

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
           V I+ L    K +EA   LEE+ + GLK     +++ +   S  G      KL + M++
Sbjct: 564 VFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKR 622



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 16/229 (6%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILG----------MQTL 222
           +I   N L+  LC  G+   A  + + +  + + P+  T+N  ILG            T 
Sbjct: 698 DITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTY 757

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M+  G +P+  T+NT +     A  + E+  +   M+ +G     P+  TY I++   
Sbjct: 758 DQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGI---EPSNLTYDILVTGY 814

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +     E   L   M+  G LP VSTY  ++      G + +A +   EM N+G  P  
Sbjct: 815 GKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTS 874

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            TY+  +      +NG E  +    M E G  PS  T + +   + + G
Sbjct: 875 CTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPG 923



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 16/210 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL--GMQT---------- 221
           P+    N L+    K G +D A  T  + + + + PN  T+N L  G+++          
Sbjct: 732 PDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMV 791

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM + G  P N TY+  +  + K     EA  L+  M  KG     P   TY  +I  
Sbjct: 792 LNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFL---PKVSTYNALISD 848

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   M +   L   M N G LP   TY  ++ G        E  KFL++M  KG+ P 
Sbjct: 849 FSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPS 908

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
             T +   +         EA RL   + +V
Sbjct: 909 KGTLSSISRAFSKPGMSWEARRLLKNLYKV 938



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 65/183 (35%), Gaps = 37/183 (20%)

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKV----------------------------- 323
           +LL  M   G   D  T   VL G+C  G+V                             
Sbjct: 123 ALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVD 182

Query: 324 --------EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
                   E A+   E M  +G   D+V YN  +  LC     D A  +   M   G  P
Sbjct: 183 GYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEP 242

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
           +V TY M I  Y      D AF  + EM ++G   DV T   ++ GL    +  EA  L 
Sbjct: 243 NVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALF 302

Query: 436 EEV 438
            E+
Sbjct: 303 REM 305


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YNT ID  CK ++V EA D +  M  +G     P   TY  +I       ++   FSLL 
Sbjct: 195 YNTIIDGLCKDKLVNEAYDFYSEMNARGIF---PNVITYTTLIGGFCLAGQLTGAFSLLN 251

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            MI     P+V TY  +++ +C  GKV+EA   L EM  +G P D+VTY   L   C N+
Sbjct: 252 EMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQ 311

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           N D+A  L+ +M E G  P+  TY  LI    + G    A + + ++  +GC  DV TY 
Sbjct: 312 NLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYN 371

Query: 417 VMIDGLFDCSKVEEA 431
           VMI GL     ++EA
Sbjct: 372 VMIGGLCKEGMLDEA 386



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 4/227 (1%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM   G  P+  TY T I  FC A  +T A  L   M  K     +P   TYAI+I AL 
Sbjct: 217 EMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNI---NPNVYTYAILIDALC 273

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  +++E  +LL  M   G   DV TY  +L+G C    +++A     +M   G  P+  
Sbjct: 274 KEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKY 333

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  LC      +A +L+  ++  GC   V TYN++I    + G  D A     +M
Sbjct: 334 TYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKM 393

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           +  GC  +V T+ ++I  LF   + ++A  LL E++ KGL L +R F
Sbjct: 394 EDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGL-LRFRNF 439



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 38/253 (15%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+ M H P    +   +    K +  + A  L + M  KG     P   T  I+I     
Sbjct: 43  MLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGI---EPNLVTLNILINCFCH 99

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE------------------- 325
             +M   FS+LG ++  G  P+  T   +++G+CL G+V++                   
Sbjct: 100 LGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVS 159

Query: 326 ----------------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
                           A KFL  + +     ++V YN  +  LC +K  +EA   Y  M 
Sbjct: 160 YGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMN 219

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G +P+V TY  LI  +   G+  GAF   +EM  +    +V TY ++ID L    KV+
Sbjct: 220 ARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVK 279

Query: 430 EACFLLEEVVNKG 442
           EA  LL E+  +G
Sbjct: 280 EAKNLLAEMHYRG 292



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 89/212 (41%), Gaps = 1/212 (0%)

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P    +  ++  L +        SL   M   G  P++ T   ++   C  G++  ++ 
Sbjct: 49  TPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFS 108

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L ++   GY P+ +T    +K LC      +++  + +++  G   +  +Y  L++   
Sbjct: 109 VLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLC 168

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           ++GE   A +    ++      +V  Y  +IDGL     V EA     E+  +G+     
Sbjct: 169 KIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVI 228

Query: 449 KFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNP 479
            + + +    + G L GA   L++ + K  NP
Sbjct: 229 TYTTLIGGFCLAGQLTGAFSLLNEMILKNINP 260



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 60/125 (48%)

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           + P IV +   L  L   K+   A+ L  +M   G  P++ T N+LI+ +  LG+   +F
Sbjct: 48  HTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSF 107

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
               ++ K G   +  T   ++ GL    +V+++    ++VV +G ++    + + L  L
Sbjct: 108 SVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGL 167

Query: 458 SVIGD 462
             IG+
Sbjct: 168 CKIGE 172


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 8/225 (3%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           + L+EM + G  PD+ TY T +   CK   + EA ++   M         P A +Y  ++
Sbjct: 157 KMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAM--------PPVAASYNAIV 208

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
           +AL +  RM+E FS++  M+  G  P+V TY  +++  C AG++  A   L  M   G  
Sbjct: 209 LALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCT 268

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P++VT+   ++ L D+    +AL ++  M+  G  PS  +YN+LI     +G+  GA   
Sbjct: 269 PNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSI 328

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            + M++ GC  +V TY  +IDG      +  A  +  ++   G K
Sbjct: 329 LNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCK 373



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 118/284 (41%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
           QP +     ++DA CK G +  A  I  R V     PN  T+  L             + 
Sbjct: 233 QPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALD 292

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M+  G AP   +YN  I   C    +  A+ +   M   G     P  +TY+ +I 
Sbjct: 293 MWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCF---PNVRTYSTLID 349

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   +    S+   M  SGC P+V  Y  +++  C      +A   +++M  +  PP
Sbjct: 350 GFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPP 409

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VT+N  ++ LCD +    AL ++  M   GC P+ +TYN LI   F  G    A    
Sbjct: 410 NTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMV 469

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            EM   G    + TY  ++ GL       EA   + +++ +G++
Sbjct: 470 TEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ 513



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 173/420 (41%), Gaps = 42/420 (10%)

Query: 55  YEAIIDNSNAYDNMEKALDSLG-VPLTTDS----VVGVLQRFQFEEKIAFRFFMWA-GHQ 108
           Y  I+      D +++A + L  +P    S    V+ + + F+ +E  +    M   G Q
Sbjct: 174 YATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQ 233

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM-----KRNNKVFVPVDVLLM--- 160
            N     + Y  ++D       KA + R+ C++L  M       N   F  +   L    
Sbjct: 234 PNV----ITYTTIVDAFC----KAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDG 285

Query: 161 ----ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYN 215
                L  +   +     P   + N+L+  LC  G +  A +I   + ++   PN  TY+
Sbjct: 286 RVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYS 345

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +    +M + G  P+   Y   +D FCK  M  +A  L + M  +
Sbjct: 346 TLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLE 405

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
                 P   T+  +I +L    R+     +   M   GC+P+  TY E++ G+   G  
Sbjct: 406 NC---PPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNC 462

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +A   + EM + G    +VTYN  +  LC  +   EA+   G+MI  G  P+  T++ +
Sbjct: 463 GDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAI 522

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I  Y + GE   A      M+   C +++  Y +++  L +  K+ +A   L +++ +G+
Sbjct: 523 IHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGI 582



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 19/259 (7%)

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
            C+   V  A  + + M  KG     P   TYA ++  L + DR++E   +L  M     
Sbjct: 146 LCQNNRVGAARKMLDEMARKGC---PPDDVTYATIVSVLCKLDRLDEATEVLAAMP---- 198

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
            P  ++Y  ++  +C   +++E +  + +M  +G  P+++TY   +   C       A  
Sbjct: 199 -PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACA 257

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           +  RM+  GC P+V T+  L+   F+ G    A + W  M   G A    +Y ++I GL 
Sbjct: 258 ILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLC 317

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMRKFYNP--- 479
               ++ A  +L  +   G     R + + +   S  GDL GAI   +D  R    P   
Sbjct: 318 SVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 377

Query: 480 -------VIARRLALNQKR 491
                  V  ++L  NQ +
Sbjct: 378 VYTNMVDVFCKKLMFNQAK 396



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 15/245 (6%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           APD      A+ TF +A       DL      + + +  P  +  A    AL QN+R+  
Sbjct: 105 APDR-----ALKTFYRA-----VHDLGCARPHRAAALQPPHRRAAAGRTWALCQNNRVGA 154

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
              +L  M   GC PD  TY  ++  +C   +++EA + L  M     PP   +YN  + 
Sbjct: 155 ARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAM-----PPVAASYNAIVL 209

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            LC      E   +   M+  G  P+V TY  ++  + + GE   A      M   GC  
Sbjct: 210 ALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTP 269

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470
           +V T+  ++ GLFD  +V +A  +   +V +G       ++  +  L  +GDL     + 
Sbjct: 270 NVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSIL 329

Query: 471 DHMRK 475
           + M +
Sbjct: 330 NSMEQ 334



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 120/306 (39%), Gaps = 32/306 (10%)

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVD 156
           + +A   ++YN++I  L S        +   S+L+ M+++               F    
Sbjct: 300 EGWAPSTVSYNILIRGLCSVG----DLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 355

Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYN 215
            L   +  + +  +   +P +     ++D  CK  + + A++ I K +     PN  T+N
Sbjct: 356 DLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFN 415

Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
            L             +    EM + G  P+  TYN  I    +     +A  +   M++ 
Sbjct: 416 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSH 475

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G  +S     TY  ++  L Q     E    +G MI  G  P+  T+  ++   C  G+V
Sbjct: 476 GIELS---LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEV 532

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
             A   L  M       +I+ Y   +  LC+     +A+    +M+  G +P+  T+N+L
Sbjct: 533 RMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 592

Query: 384 ISMYFE 389
           +   F 
Sbjct: 593 VRGVFR 598


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 135/314 (42%), Gaps = 45/314 (14%)

Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN------------ILGMQTL 222
           +I   N L++A C+ GL+  A  +   +  K +KP   TYN            +      
Sbjct: 219 DIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVF 278

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST-----------ISS-- 269
            EM+ +G +PD  TYNT +   C+     EA D+F  M  +G +           +SS  
Sbjct: 279 NEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRN 338

Query: 270 -------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                              P    Y I+I    +N  M E   +   M+  GC  DV  Y
Sbjct: 339 GHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAY 398

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +L G+C    + +A    +EM  +G  PD  T+   +   C   N  +AL L+G M +
Sbjct: 399 NTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQ 458

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
               P + TYN+LI  + +  E + A E W+EM  R    +  +Y ++++G  +   V E
Sbjct: 459 KNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSE 518

Query: 431 ACFLLEEVVNKGLK 444
           A  L +E++ KG+K
Sbjct: 519 AFRLWDEMIRKGIK 532



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 10/261 (3%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           +L+  C   +V Y   +    K K+  +AN          +EM++ G  PD  T+ T I 
Sbjct: 386 MLEQGCALDVVAYNTILNGLCKKKLLADANAL-------FDEMVERGVVPDFCTFTTLIH 438

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
             CK   + +A  LF  M  K      P   TY I+I    +   ME+   L   MI+  
Sbjct: 439 GHCKEGNMGKALSLFGIMTQKNI---KPDIVTYNILIDGFCKTTEMEKANELWNEMISRK 495

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P+  +Y  ++ G C  G V EA++  +EM  KG  P +VT N  +K  C + +  +A 
Sbjct: 496 IFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKAD 555

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
              G+MI  G  P   TYN LI+ + +    D AF   ++M+ +G   DV TY V+++G 
Sbjct: 556 EFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGF 615

Query: 423 FDCSKVEEACFLLEEVVNKGL 443
               +++EA  +L +++ +G+
Sbjct: 616 CRQGRMQEAELILRKMIERGI 636



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 16/301 (5%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILGMQT------------LE 223
           INA N LL  L K G VD A  +   + ++ ++ N  T NI+                L 
Sbjct: 150 INACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLI 209

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M Q G   D  TYNT I+ +C+  ++ EA ++   M  KG     PT  TY  +I  L 
Sbjct: 210 DMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGL---KPTLFTYNAVINGLC 266

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           +  R      +   M++ G  PD +TY  +L   C      EA     +M ++G  PD++
Sbjct: 267 KKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLI 326

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           +++  + V   N + D+AL  +  M   G  P    Y +LI+ Y   G    A E   +M
Sbjct: 327 SFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKM 386

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            ++GCA DV  Y  +++GL     + +A  L +E+V +G+   +  F + +      G++
Sbjct: 387 LEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNM 446

Query: 464 G 464
           G
Sbjct: 447 G 447



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 16/281 (5%)

Query: 176 EINALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNIL------------GMQTL 222
           ++ A N +L+ LCK  L+  A  +  + V+  V P+  T+  L             +   
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             M Q    PD  TYN  ID FCK   + +A +L+  M ++      P   +YAI++   
Sbjct: 454 GIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIF---PNHISYAILVNGY 510

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
                + E F L   MI  G  P + T   V++G C +G + +A +FL +M ++G  PD 
Sbjct: 511 CNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDS 570

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +TYN  +      +  D+A  L  +M   G  P V TYN++++ +   G    A     +
Sbjct: 571 ITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRK 630

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M +RG   D  TY  +I+G      ++EA    +E++ +G 
Sbjct: 631 MIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGF 671



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 141/311 (45%), Gaps = 23/311 (7%)

Query: 147 RNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
           RNN      D+       +++ +     P++ + + L+    + G +D A    + +K  
Sbjct: 302 RNNNFLEAKDI-------FSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTS 354

Query: 207 -VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            + P+   Y IL             ++  ++M++ G A D   YNT ++  CK +++ +A
Sbjct: 355 GLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADA 414

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
             LF+ M  +G     P   T+  +I    +   M +  SL G M      PD+ TY  +
Sbjct: 415 NALFDEMVERGVV---PDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           ++G C   ++E+A +   EM ++   P+ ++Y   +   C+     EA RL+  MI  G 
Sbjct: 472 IDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI 531

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P++ T N +I  Y   G+   A E   +M   G   D  TY  +I+G      +++A F
Sbjct: 532 KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFF 591

Query: 434 LLEEVVNKGLK 444
           L+ ++  KGL+
Sbjct: 592 LINKMETKGLQ 602



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 114/262 (43%), Gaps = 16/262 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P+      L+   CK G +  A ++   +  K +KP+  TYNIL      
Sbjct: 418 FDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCK 477

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +   EMI     P++ +Y   ++ +C    V+EA  L++ M  KG     PT
Sbjct: 478 TTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI---KPT 534

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T   +I    ++  + +    LG MI+ G  PD  TY  ++ G      +++A+  + 
Sbjct: 535 LVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLIN 594

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           +M  KG  PD+VTYN  L   C      EA  +  +MIE G  P   TY  LI+ Y    
Sbjct: 595 KMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQD 654

Query: 392 EPDGAFETWHEMDKRGCAQDVD 413
               AF    EM +RG   D D
Sbjct: 655 NLKEAFRFHDEMLQRGFVPDDD 676



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 44/286 (15%)

Query: 201 KRVKNKVKPNANTYNILGM---------QTLEEMIQMGH--APDNFTYNTAIDTFCKARM 249
           +RV++K   +A T  IL M         + +E +I M      DN  ++  I ++ +AR 
Sbjct: 72  RRVRSKRLSDAQTL-ILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARK 130

Query: 250 VTEAADLFEFMRTKGSTISSPTAK--------------------------------TYAI 277
           + E  D F+ +R KG  +S                                     T  I
Sbjct: 131 LNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNI 190

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           M+ AL ++ ++++    L  M   G   D+ TY  ++   C  G + EA++ +  M  KG
Sbjct: 191 MVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKG 250

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             P + TYN  +  LC       A  ++  M+ +G  P   TYN L+           A 
Sbjct: 251 LKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAK 310

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + + +M  RG + D+ ++  +I        +++A     ++   GL
Sbjct: 311 DIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGL 356


>gi|125549949|gb|EAY95771.1| hypothetical protein OsI_17645 [Oryza sativa Indica Group]
          Length = 240

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M   G A D  +Y+  +D   K+    +A  +F+ M+ KG  I    A   AI  V L Q
Sbjct: 1   MDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDV-VAYNTAIHSVGLAQ 59

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              ++    L   M+++GC P+ ST+  +++ +C  G+ +E Y F+++M   G  P+++T
Sbjct: 60  G--VDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLT 117

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+CF + L   +   E L L+ +M+E GCWP + TY MLI  +   G     F  W  M+
Sbjct: 118 YHCFFQYLSRPQ---EVLGLFEKMLERGCWPRMDTYVMLIKRFGRWGFLRPVFIVWKAME 174

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
           ++G + D   Y  +ID L     V+ A    EE+++KGL    RK
Sbjct: 175 EQGLSPDAFAYNSLIDALLQKGMVDLARKYDEEMLSKGLSPKPRK 219



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M + G   D+ +Y   ++ +  +GK  +A+K  +EM  KG   D+V YN  +  +   + 
Sbjct: 1   MDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVGLAQG 60

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D A+RLY +M++ GC P+  T+N ++ +  + G     +    +M K G   +V TY  
Sbjct: 61  VDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLTYHC 120

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
               L   S+ +E   L E+++ +G    + + D+Y+M +   G  G
Sbjct: 121 FFQYL---SRPQEVLGLFEKMLERGC---WPRMDTYVMLIKRFGRWG 161


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNA-------NTYNILG-MQTLEEM 225
           P++    +L+DALC  G ++ A+ +  ++K N  KP+        + +N  G + T +E 
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEF 354

Query: 226 I-QM---GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             QM   G+ PD  T+   +D  CKAR   EA   F+ MR +G     P   TY  +I  
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL---PNLHTYNTLICG 411

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L++  R+E+   LL  M + G  P   TY   ++    +G+  +A +  E+M  KG  P+
Sbjct: 412 LLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPN 471

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           IV  N  L  L +     EA  ++  + E G  P   TYNM++  Y ++G+ D A     
Sbjct: 472 IVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLS 531

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM + GC  DV     +ID L+   +V+EA  + + +  K +KL      +Y   LS +G
Sbjct: 532 EMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM--KDMKLS-PTVVTYNTLLSGLG 588

Query: 462 DLGAIHK 468
             G + K
Sbjct: 589 KEGRVQK 595



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 17/293 (5%)

Query: 183  LLDALCKCGLVDYAETICKRVKNK--VKPNANTYNILGMQTLE------------EMIQM 228
            L+  LCK     YA  I  +   K  + P   +YN L  + LE            +M  +
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 229  GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
            G APD FT+N  +    K+  +TE   LFE  +   S    P A TY I+I +L +++ +
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITE---LFELYKEMISRRCKPDAITYNIVISSLAKSNNL 874

Query: 289  EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            ++       +++S   P   TY  +++G+   G++EEA +  EEM + G  P+   +N  
Sbjct: 875  DKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNIL 934

Query: 349  LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
            +       + + A +L+ RM+  G  P +++Y +L+      G  D A   ++E+   G 
Sbjct: 935  INGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGL 994

Query: 409  AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
              D   Y  +I+GL    ++EEA  L  E+ N+G+      ++S ++ L + G
Sbjct: 995  DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAG 1047



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 45/309 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P++    +L+D LCK    D A  T     K  + PN +TYN L             ++ 
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
           L+ M  +G  P  +TY T ID F K+    +A + FE M+ KG   +             
Sbjct: 425 LDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484

Query: 269 -------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                              +P + TY +M+    +  +++E  +LL  MI +GC PDV  
Sbjct: 485 MGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIV 544

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
              +++ +  AG+V+EA++  + M +    P +VTYN  L  L       +A+ L+  MI
Sbjct: 545 VNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI 604

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
              C P+  ++N L+  + +  E + A + + +M    C  DV TY  +I GL   +KV 
Sbjct: 605 XKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVN 664

Query: 430 EACFLLEEV 438
            A +   ++
Sbjct: 665 HAFWFFHQL 673



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 161  ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILG- 218
            I  ++T+K+ +   P + + N L+  L +    + A  + K +KN    P+A T+N+L  
Sbjct: 774  IFDKFTKKLGI--SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 219  -----------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                        +  +EMI     PD  TYN  I +  K+  + +A D F  +    S+ 
Sbjct: 832  VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV---SSD 888

Query: 268  SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
              PT +TY  +I  L +  R+EE   L   M + GC P+ + +  ++ G    G  E A 
Sbjct: 889  FRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETAC 948

Query: 328  KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
            +  + M N+G  PD+ +Y   +  LC     DEAL  +  +   G  P    YN +I+  
Sbjct: 949  QLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008

Query: 388  FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +    + A   ++EM  RG   D+ TY  ++  L     VE+A  + EE+   GL+
Sbjct: 1009 GKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLE 1065



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 24/279 (8%)

Query: 164  QYTEKI--------KVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTY 214
             YTEK          V   P+    N+LL    K G + +  E   + +  + KP+A TY
Sbjct: 802  HYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITY 861

Query: 215  NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            NI+             +    +++     P   TY   ID   K   + EA  LFE M  
Sbjct: 862  NIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSD 921

Query: 263  KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
             G     P    + I+I    +    E    L   M+N G  PD+ +Y  +++ +CLAG+
Sbjct: 922  YGC---KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGR 978

Query: 323  VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            V+EA  +  E+ + G  PD + YN  +  L  ++  +EAL LY  M   G  P + TYN 
Sbjct: 979  VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNS 1038

Query: 383  LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
            L+      G  + A   + E+   G   DV TY  +I G
Sbjct: 1039 LMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRG 1077



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 16/223 (7%)

Query: 174  QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
            +P       L+D L K G ++ A  + + + +   KPN   +NIL              Q
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 221  TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              + M+  G  PD  +Y   +D  C A  V EA   F  +++ G     P    Y  +I 
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGL---DPDFIAYNRIIN 1006

Query: 281  ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             L ++ RMEE  +L   M N G +PD+ TY  ++  + LAG VE+A +  EE+   G  P
Sbjct: 1007 GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEP 1066

Query: 341  DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            D+ TYN  ++    ++N + A  +Y  M+  GC P++ TY  L
Sbjct: 1067 DVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 16/268 (5%)

Query: 161  ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-- 217
            + + Y E I  + +P+    N+++ +L K   +D A +     V +  +P   TY  L  
Sbjct: 842  LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLID 901

Query: 218  ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       M+  EEM   G  P+   +N  I+ + K      A  LF+ M  +G   
Sbjct: 902  GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGI-- 959

Query: 268  SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
              P  K+Y I++  L    R++E       + ++G  PD   Y  ++ G+  + ++EEA 
Sbjct: 960  -RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEAL 1018

Query: 328  KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
                EM N+G  PD+ TYN  +  L      ++A R+Y  +   G  P V TYN LI  Y
Sbjct: 1019 ALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078

Query: 388  FELGEPDGAFETWHEMDKRGCAQDVDTY 415
                 P+ A+  +  M   GC  ++ TY
Sbjct: 1079 SLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 133/308 (43%), Gaps = 16/308 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILG------------MQTLEEMIQ 227
           N L+  L + G    A  + +R V   +KP+  TY+ L             M  L+EM  
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMED 255

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +G  P+ +T+   I    +A  + EA ++F  M  +G     P   TY ++I AL    +
Sbjct: 256 LGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGC---GPDLVTYTVLIDALCNAGQ 312

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E    L   M  +G  PD   Y  +L+     G ++   +F  +M   GY PD+VT+  
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            + VLC  ++ DEA   +  M + G  P++ TYN LI      G  + A +    M+  G
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
                 TY   ID      +  +A    E++  KG+       ++ L  L+ +G L    
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 468 KLSDHMRK 475
            + + +R+
Sbjct: 493 TMFNGLRE 500



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 3/252 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L +M + G   + ++YN  I    ++    EA +++  M ++G     P+ KTY+ ++VA
Sbjct: 180 LNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL---KPSLKTYSALMVA 236

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +    E    LL  M + G  P+V T+   +  +  AGK++EAY+    M ++G  PD
Sbjct: 237 LGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPD 296

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +  LC+    + A  L+ +M   G  P    Y  L+  + + G+ D   E W 
Sbjct: 297 LVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           +M+  G   DV T+ +++D L      +EA    + +  +G+      +++ +  L   G
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAG 416

Query: 462 DLGAIHKLSDHM 473
            +    KL D M
Sbjct: 417 RIEDALKLLDTM 428



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 160/395 (40%), Gaps = 87/395 (22%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------- 217
           +E I+   +P++  +N L+D+L K G VD A  +  R+K+ K+ P   TYN L       
Sbjct: 531 SEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKE 590

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                 ++  E MI    +P+  ++NT +D FCK   V  A  +F  M         P  
Sbjct: 591 GRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDC---KPDV 647

Query: 273 KTYAIMIVALVQNDRMEECF------------------SLLGHMINSGCLPDV------- 307
            TY  +I  L++ +++   F                  +LL  ++  G + D        
Sbjct: 648 LTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDF 707

Query: 308 ----------STYKEVLEGMCLAGKVEEAYKFLEEM------------------------ 333
                     S +++++ G  +  ++++A  F EE+                        
Sbjct: 708 MYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKR 767

Query: 334 ------------GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
                          G  P + +YNC +  L +    ++A  L+  M  VGC P   T+N
Sbjct: 768 ELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFN 827

Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           ML++++ + G+    FE + EM  R C  D  TY ++I  L   + +++A     ++V+ 
Sbjct: 828 MLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSS 887

Query: 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
             +   R +   +  L+ +G L    +L + M  +
Sbjct: 888 DFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 3/224 (1%)

Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
           V + A +FEFM+ K   I      TY  +  AL     + +  ++L  M  +G + +  +
Sbjct: 138 VEDMAAVFEFMQKK---IIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYS 194

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  ++  +  +G   EA +    M ++G  P + TY+  +  L   ++ +  + L   M 
Sbjct: 195 YNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEME 254

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           ++G  P+V T+ + I +    G+ D A+E +  MD  GC  D+ TY V+ID L +  ++E
Sbjct: 255 DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLE 314

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
            A  L  ++   G K     + + L + +  GDL    +    M
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQM 358



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 152/402 (37%), Gaps = 60/402 (14%)

Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMK--RNNKVFVPVDVLLMILKQ----------YTE 167
           ++++ L  + YKA +      M D MK  + +   V  + LL  L +          +  
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEEMI 226
            I  K  P   + N LLD  CK   V+ A +   K      KP+  TYN +    ++E  
Sbjct: 603 MIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKEN- 661

Query: 227 QMGHA------------PDNFTYNTAIDTFCKARMVTEAADL---------FEFMRT--- 262
           ++ HA            PD+ T  T +    K   + +A  +         F   R+   
Sbjct: 662 KVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWE 721

Query: 263 --KGSTISSPTAKTYAIMIVALVQNDR-MEECF-------------SLLGHMI------N 300
              G T+         I    LV N    E+ F              L  + I       
Sbjct: 722 DLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKK 781

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
            G  P +++Y  ++  +      E+A+   ++M N G  PD  T+N  L V   +    E
Sbjct: 782 LGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITE 841

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
              LY  MI   C P   TYN++IS   +    D A + ++++          TY  +ID
Sbjct: 842 LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLID 901

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           GL    ++EEA  L EE+ + G K     F+  +     IGD
Sbjct: 902 GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 38/205 (18%)

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T +T   M+  L  +D++E+  ++   M       D+ TY  + + + + G + +    L
Sbjct: 121 TTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVL 180

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            +M   G+  +  +YN  + +L  +    EAL +Y RM+  G  PS++TY+ L+     L
Sbjct: 181 NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALM---VAL 237

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+            KR      D+  VM+              LL+E+ + GL+      
Sbjct: 238 GK------------KR------DSEMVMV--------------LLKEMEDLGLR---PNV 262

Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRK 475
            ++ + + V+G  G I +  +  R+
Sbjct: 263 YTFTICIRVLGRAGKIDEAYEIFRR 287


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 25/280 (8%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           K   + IK K  P++ A + L+D   K G +  AE + K                     
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK--------------------- 341

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EMIQ G +PD  TY + ID FCK   + +A  + + M +KG     P  +T+ I+I   
Sbjct: 342 -EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGC---GPNIRTFNILINGY 397

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            + + +++   L   M   G + D  TY  +++G C  GK+E A +  +EM ++   PDI
Sbjct: 398 CKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDI 457

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V+Y   L  LCDN   ++AL ++ ++ +      +  YN++I       + D A++ +  
Sbjct: 458 VSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 517

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +  +G   DV TY +MI GL     + EA  L  ++   G
Sbjct: 518 LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++++D LCK G +D A  +   ++ K  K +   Y  L            G + L +MI+
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD   ++  ID F K   + EA +L + M  +G    SP   TY  +I    + ++
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI---SPDTVTYTSLIDGFCKENQ 367

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +++   +L  M++ GC P++ T+  ++ G C A  +++  +   +M  +G   D VTYN 
Sbjct: 368 LDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNT 427

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            ++  C+    + A  L+  M+     P + +Y +L+    + GEP+ A E + +++K  
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              D+  Y ++I G+ + SKV++A  L   +  KG+K   + ++  +  L   G L
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSL 543



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 136/324 (41%), Gaps = 51/324 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           IK+  +P+    + L++ LC  G V  A E + + V+   KP   T N L          
Sbjct: 134 IKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKV 193

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  ++ M++ G  P+  TY   +   CK+     A +L   M  +   +    A  Y
Sbjct: 194 SDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD---AVKY 250

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL----- 330
           +I+I  L ++  ++  F+L   M   G   D+  Y  ++ G C AG+ ++  K L     
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310

Query: 331 ------------------------------EEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                                         +EM  +G  PD VTY   +   C     D+
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  +   M+  GC P+++T+N+LI+ Y +    D   E + +M  RG   D  TY  +I 
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           G  +  K+E A  L +E+V++ ++
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVR 454



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 16/286 (5%)

Query: 179 ALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            L+++++  C+C  +  A   + K +K   +P+  T++ L             ++ ++ M
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           ++MGH P   T N  ++  C    V++A  L + M   G     P   TY  ++  + ++
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGF---QPNEVTYGPVLKVMCKS 225

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            +      LL  M       D   Y  +++G+C  G ++ A+    EM  KG+  DI+ Y
Sbjct: 226 GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIY 285

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
              ++  C     D+  +L   MI+    P V  ++ LI  + + G+   A E   EM +
Sbjct: 286 TTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ 345

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
           RG + D  TY  +IDG    +++++A  +L+ +V+KG     R F+
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFN 391



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 16/263 (6%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E I+    P+      L+D  CK   +D A  +   + +K   PN  T+NIL      
Sbjct: 340 HKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCK 399

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G++   +M   G   D  TYNT I  FC+   +  A +LF+ M ++      P 
Sbjct: 400 ANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV---RPD 456

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y I++  L  N   E+   +   +  S    D+  Y  ++ GMC A KV++A+    
Sbjct: 457 IVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 516

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            +  KG  PD+ TYN  +  LC   +  EA  L+ +M E G  P+  TYN+LI  +   G
Sbjct: 517 SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEG 576

Query: 392 EPDGAFETWHEMDKRGCAQDVDT 414
           +   + +   E+ + G + D  T
Sbjct: 577 DATKSAKLIEEIKRCGFSVDAST 599



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 3/223 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM +    P    ++       + +      DL + M  KG    +    T +IMI  
Sbjct: 60  FQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGI---AHNLYTLSIMINC 116

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++   FS +G +I  G  PD  T+  ++ G+CL G+V EA + ++ M   G+ P 
Sbjct: 117 CCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPT 176

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++T N  +  LC N    +A+ L  RM+E G  P+  TY  ++ +  + G+   A E   
Sbjct: 177 LITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLR 236

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +M++R    D   Y ++IDGL     ++ A  L  E+  KG K
Sbjct: 237 KMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK 279



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++M   G A + +T +  I+  C+ R ++ A   F  M         P   T++ +I  L
Sbjct: 96  KQMELKGIAHNLYTLSIMINCCCRCRKLSLA---FSAMGKIIKLGYEPDTVTFSTLINGL 152

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
               R+ E   L+  M+  G  P + T   ++ G+CL GKV +A   ++ M   G+ P+ 
Sbjct: 153 CLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTY   LKV+C +     A+ L  +M E         Y+++I    + G  D AF  ++E
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           M+ +G   D+  Y  +I G     + ++   LL +++ +
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 40/258 (15%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GMQT 221
           + E +  + +P+I +  +LLD LC  G  + A  I +++ K+K++ +   YNI+  GM  
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 222 LEEMIQM----------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
             ++             G  PD  TYN  I   CK   ++EA  LF  M   G    SP 
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGH---SPN 561

Query: 272 AKTYAIMIVA-LVQND---------RMEEC------------FSLLGHMINSGCLPDVST 309
             TY I+I A L + D          ++ C             S L  M+ +G  PDV T
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFT 621

Query: 310 YKEVLEGMCLA--GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
           +  +L   CL     V +A    + M   GY P++VTYN  +K L +     +   +  +
Sbjct: 622 FTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQ 681

Query: 368 MIEVGCWPSVQTYNMLIS 385
           M E GC P+  T +  IS
Sbjct: 682 MFERGCQPNAVTKSTFIS 699



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 123/306 (40%), Gaps = 42/306 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N+L++  CK  L+D    + +++  + V  +  TYN L              + 
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+     PD  +Y   +D  C      +A ++FE +      +       Y I+I  
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD---IGIYNIIIHG 501

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           +    ++++ + L   +   G  PDV TY  ++ G+C  G + EA     +M   G+ P+
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561

Query: 342 IVTYNCFLKVLCDNKNGDE----------------------ALRLYGRMIEVGCWPSVQT 379
             TYN  ++      +  +                      AL    RM++ G  P V T
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFT 621

Query: 380 YNMLISMYFELGEPDGAFET---WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +  L+   F L E    ++    +  M   G   +V TY  +I GL + + + +   +L+
Sbjct: 622 FTTLLR-PFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLD 680

Query: 437 EVVNKG 442
           ++  +G
Sbjct: 681 QMFERG 686



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 40/199 (20%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--------------- 217
           +P++   N+++  LCK G +  A+ + ++++ +   PN  TYNIL               
Sbjct: 524 KPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAK 583

Query: 218 -------------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC--KARMVTEAADL 256
                               + TL  M++ GH PD FT+ T +  FC  +   V +A  L
Sbjct: 584 LIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTL 643

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
           F+ M+  G     P   TY  +I  L+  + + +   +L  M   GC P+  T    + G
Sbjct: 644 FKNMKAMGY---KPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISG 700

Query: 317 MCLAGKVEEAYKFLEEMGN 335
           +C       A   L +M N
Sbjct: 701 LCKQDLHGSAILLLRKMEN 719


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 15/274 (5%)

Query: 178 NALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEE 224
           + +N+L+ A  K G++D A  +   ++ + V+PN  TY+ L             M+   +
Sbjct: 408 HCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQ 467

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           MI +G  P+   Y++ I  FC    + +A +    M +KG  +  P    ++ +I +L  
Sbjct: 468 MISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG--LHRPNIVFFSSIIHSLCI 525

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
             R+ +   +   +I+ G  P + T+  +++G CL GK+E+A+  L+ M + G  PD+VT
Sbjct: 526 EGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVT 585

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
            N  +   C +   D+ L L+  M+     P+  TYN+++      G    A + +HEM 
Sbjct: 586 NNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMI 645

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             G A D+DTY +++ GL      +EA  L  ++
Sbjct: 646 DSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKL 679



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 17/293 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           +TE      +P +   + L+ A C+ G L D  E   + +   ++PN   Y+ L      
Sbjct: 430 FTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCM 489

Query: 218 ------GMQTLEEMIQMG-HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   + + EM+  G H P+   +++ I + C    V +A D+F  +   G     P
Sbjct: 490 HGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGD---RP 546

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
           T  T+  +I       +ME+ F +L  M++ G  PDV T   ++ G C +GK+++     
Sbjct: 547 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILF 606

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
            EM +K   P  VTYN  L  L        A +++  MI+ G    + TY +L+      
Sbjct: 607 REMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN 666

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
              D A   +H++    C  D+     MI+ L+   + EEA  L   +   GL
Sbjct: 667 DLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGL 719



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 25/292 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
           + E ++    P++   N ++DALCK   +D AE +                      L +
Sbjct: 255 FNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFV----------------------LRQ 292

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           M+  G  PD  TYN  I  +  +    E+A +F  M +KG     P   T++  + +L +
Sbjct: 293 MVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLI---PDTVTFSSFMSSLCK 349

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           + R ++   +  +M   G +PD+ +Y  +L G    G+  +       M +KG   +   
Sbjct: 350 HGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHC 409

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
            N  +         DEA+ ++  M   G  P+V TY+ LIS +  +G    A E + +M 
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
             G   +   Y  +I G      + +A   + E+++KGL  P   F S ++ 
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIH 521



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 138/313 (44%), Gaps = 17/313 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNIL--GMQT---------- 221
           P+    +  + +LCK G    AE I + +  K   P+  +Y+IL  G  T          
Sbjct: 335 PDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNL 394

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              M   G   +    N  I    K  M+ EA  +F  M+ +G     P   TY+ +I A
Sbjct: 395 FHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGV---RPNVVTYSTLISA 451

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPP 340
             +  R+ +       MI+ G  P+ + Y  ++ G C+ G + +A +F+ EM +KG + P
Sbjct: 452 FCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRP 511

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +IV ++  +  LC      +A  ++  +I +G  P++ T+N LI  Y  +G+ + AF   
Sbjct: 512 NIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 571

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
             M   G   DV T   ++ G     K+++   L  E+++K +K     ++  L  L   
Sbjct: 572 DAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRA 631

Query: 461 GDLGAIHKLSDHM 473
           G   A  K+   M
Sbjct: 632 GRTSAAKKMFHEM 644



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 23/282 (8%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTEAA 254
           P+A +YN +             +  ++ M + G   +PD  ++NT I  F K   V++A 
Sbjct: 193 PDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC 252

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           +LF  M  KG     P   TY  ++ AL +   M++   +L  M++ G  PD  TY  ++
Sbjct: 253 NLFNEMVQKGVV---PDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAII 309

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G   +G  +E+ K   +M +KG  PD VT++ F+  LC +    +A  ++  M   G  
Sbjct: 310 HGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHM 369

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P + +Y++L+  Y   G        +H M  +G   +     ++I        ++EA  +
Sbjct: 370 PDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLV 429

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
             E+  +G++     + + +     +G      +L+D M KF
Sbjct: 430 FTEMQGQGVRPNVVTYSTLISAFCRMG------RLADAMEKF 465



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 144/337 (42%), Gaps = 27/337 (8%)

Query: 142 LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK 201
           L + KR ++    VDVLL  + +      +   P+  + N ++ +LC       A  + +
Sbjct: 169 LCHAKRTDEA---VDVLLHRMSE------LSCVPDAISYNTVIKSLCGDSRSQEALDMVQ 219

Query: 202 RVK---NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
           R+     +  P+  ++N +                  EM+Q G  PD  TYN+ +D  CK
Sbjct: 220 RMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCK 279

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           AR + +A  +   M  KG     P   TY  +I     +   +E   +   M + G +PD
Sbjct: 280 ARAMDKAEFVLRQMVDKGV---EPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPD 336

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             T+   +  +C  G+ ++A +  + M  KG+ PDIV+Y+  L          +   L+ 
Sbjct: 337 TVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFH 396

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M + G   +    N+LIS + + G  D A   + EM  +G   +V TY  +I       
Sbjct: 397 SMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMG 456

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           ++ +A     ++++ G++     + S +    + GDL
Sbjct: 457 RLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDL 493



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
           G  ++  T +TY I++    +  R +   + +  ++ +G           L+ +C A + 
Sbjct: 116 GPRVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRT 175

Query: 324 EEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTY 380
           +EA    L  M      PD ++YN  +K LC +    EAL +  RM + G  C P V ++
Sbjct: 176 DEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSF 235

Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
           N +I  +F+ GE   A   ++EM ++G   DV TY  ++D L     +++A F+L ++V+
Sbjct: 236 NTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVD 295

Query: 441 KGLK 444
           KG++
Sbjct: 296 KGVE 299



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 51/213 (23%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------- 217
           + V  +P++   N L+   CK G +D    + +  +  KVKP   TYNI+          
Sbjct: 575 VSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRT 634

Query: 218 --GMQTLEEMIQMGHAPDNFTY-----------------------------------NTA 240
               +   EMI  G A D  TY                                   NT 
Sbjct: 635 SAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTM 694

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I+   K R   EA DLF  + T G     P   TY +MI  L++   +EE  ++   M  
Sbjct: 695 INALYKVRRREEANDLFAAISTSGLV---PNVSTYGVMIRNLLKEGSVEEADTMFSSMEK 751

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           SGC P      +++  +   G + +A  ++ ++
Sbjct: 752 SGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKV 784


>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 497

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 188/404 (46%), Gaps = 38/404 (9%)

Query: 66  DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL 125
           + +E+AL+ +G+    + V+ VLQR + + K AF FF W    +NY      YN +I+IL
Sbjct: 82  EQIEQALNLIGIHPNNNLVLQVLQRHRSDWKPAFIFFKWVSKTNNYTPSCEVYNEIINIL 141

Query: 126 SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT---------------EKIK 170
                K K F  +  +LD M +  K F+  +   ++++++                E+  
Sbjct: 142 G----KMKCFEELHQVLDEMSQR-KEFINEETFCILIRRFVAAHKLEEAINIFYRREEFG 196

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNILGMQTLEEMIQM 228
           +  + +  A   LL  +C+   ++ AET+  R  NK +   +  T+N++    L     +
Sbjct: 197 LDNELDSKAFRTLLMWMCRYKHIEEAETLFHRNLNKFRFCRDIKTWNVI----LNGWCVL 252

Query: 229 GHAPD-NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-SPTAKTYAIMIVALVQND 286
           G+  +    +   I   CK     E  + FE ++      S  P    +  +I  L    
Sbjct: 253 GNTHEAKRLWKDIIAYKCK-----EIGNCFEVVQWDVEEESCKPDVVIFNCLIDGLCFKK 307

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--PDIVT 344
           R+ E   +   M    CLP+V+TY  +++ +    ++E+ Y+ +E+M  +     P+ VT
Sbjct: 308 RIPEALQVFHDMKERDCLPNVATYNSLIKHLFKIRRMEKVYELVEDMERRSGDCLPNGVT 367

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
           Y+  L+ L   K  +E   +  RM   GC  S    N+++ +Y +  + DG  +TW EM+
Sbjct: 368 YSYLLQSL---KAPEEVPAVLERMERNGCAMSDDICNLILRLYMKWDDLDGLRKTWDEME 424

Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
           + G   D  +Y +MI G ++  + ++A    +E+ +KG+ L  R
Sbjct: 425 RNGLGPDRRSYTIMIHGHYENGRTKDAMRYFQEMTSKGIVLEPR 468



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 132/313 (42%), Gaps = 54/313 (17%)

Query: 205 NKVKPNANTYN----ILG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
           N   P+   YN    ILG         Q L+EM Q     +  T+   I  F  A  + E
Sbjct: 125 NNYTPSCEVYNEIINILGKMKCFEELHQVLDEMSQRKEFINEETFCILIRRFVAAHKLEE 184

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYK 311
           A ++F + R +    +   +K +  +++ + +   +EE  +L    +N      D+ T+ 
Sbjct: 185 AINIF-YRREEFGLDNELDSKAFRTLLMWMCRYKHIEEAETLFHRNLNKFRFCRDIKTWN 243

Query: 312 EVLEGMCLAGKVEEAYKFLE--------EMGN-----------KGYPPDIVTYNCFLKVL 352
            +L G C+ G   EA +  +        E+GN           +   PD+V +NC +  L
Sbjct: 244 VILNGWCVLGNTHEAKRLWKDIIAYKCKEIGNCFEVVQWDVEEESCKPDVVIFNCLIDGL 303

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG--CAQ 410
           C  K   EAL+++  M E  C P+V TYN LI   F++   +  +E   +M++R   C  
Sbjct: 304 CFKKRIPEALQVFHDMKERDCLPNVATYNSLIKHLFKIRRMEKVYELVEDMERRSGDCLP 363

Query: 411 DVDTYCVMIDGLFDCSKV--------EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           +  TY  ++  L    +V           C + +++ N  L+L Y K+D          D
Sbjct: 364 NGVTYSYLLQSLKAPEEVPAVLERMERNGCAMSDDICNLILRL-YMKWD----------D 412

Query: 463 LGAIHKLSDHMRK 475
           L  + K  D M +
Sbjct: 413 LDGLRKTWDEMER 425


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 163/378 (43%), Gaps = 44/378 (11%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE-- 167
           ++  +P  +++   +L       +  +L   ML+Y      + + VD   + +   +E  
Sbjct: 177 DWGSDPRVFDIFFQVLVEAGMLDEARKLFDKMLNY-----GLLISVDSCNLFISHLSEDL 231

Query: 168 ---KIKVKTQ---PEIN------ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
              KI +K     PE+       + N++  +LC+ G V  A                   
Sbjct: 232 DGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAH------------------ 273

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
               Q L +M   G  PD  +Y+T I+ +C+   +     L E M+ KG     P   TY
Sbjct: 274 ----QLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGL---KPNPYTY 326

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             +I+ L +  ++ E   +L  MI+ G  PD   Y  +++G C  G V  AY+  +EM  
Sbjct: 327 NGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQK 386

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +   PD +TY   +  LC      EA +L+  M+     P   TY  LI  Y + G+   
Sbjct: 387 RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKE 446

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           AF   ++M + G   ++ TY  + DGL  C +V+ A  LL E+  KGL+L    ++S + 
Sbjct: 447 AFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVN 506

Query: 456 QLSVIGDLGAIHKLSDHM 473
            L   G++    KL   M
Sbjct: 507 GLCKAGNIDQAVKLMKDM 524



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 149/336 (44%), Gaps = 45/336 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGM------------QT 221
           P++ + + +++  C+ G +     + + ++ K +KPN  TYN + +            + 
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK------------------ 263
           L EMI  G APD   Y T ID FCK   V+ A  LF+ M+ +                  
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405

Query: 264 -GSTISS-------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
            G  + +             P   TY  +I    +  +M+E FSL   M+  G  P++ T
Sbjct: 406 TGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT 465

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  + +G+C  G+V+ A + L EM  KG   +I TYN  +  LC   N D+A++L   M 
Sbjct: 466 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDME 525

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
             G  P   TY  L+  Y +  E   A E   +M  R     V T+ V+++G      +E
Sbjct: 526 VAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLE 585

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
           +   LL+ ++ KG+      ++S + Q  +  ++ A
Sbjct: 586 DGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRA 621



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------ 217
           + + +++   P I     L D LCKCG VD A E + +  +  ++ N  TYN L      
Sbjct: 451 HNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 510

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ +++M   G  PD  TY T +D +CK+R +  A +L   M  +      PT
Sbjct: 511 AGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL---QPT 567

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ +++     +  +E+   LL  M+  G +P+ +TY  +++  C+   +    +   
Sbjct: 568 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 627

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  KG  PD  TYN  +K  C  +N  EA  L+  M+  G   +V +YN LI  +++  
Sbjct: 628 GMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRK 687

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A E + +M + G   D + Y +  D  +D  K+E    L +E + K L
Sbjct: 688 KFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCL 739



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 32/365 (8%)

Query: 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVLLMILKQYT 166
           P  YN +I +L  T   A+  R++  M+      + V        F  +  +    + + 
Sbjct: 323 PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFD 382

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-----ETICKRVKNKVKPNANTYNIL---- 217
           E  K K  P+      ++  LC+ G V  A     E +CKR++    P+  TY  L    
Sbjct: 383 EMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLE----PDEVTYTALIDGY 438

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                         +M+QMG  P+  TY    D  CK   V  A +L   M  KG  ++ 
Sbjct: 439 CKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN- 497

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
               TY  ++  L +   +++   L+  M  +G  PD  TY  +++  C + ++  A++ 
Sbjct: 498 --IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHEL 555

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L +M ++   P +VT+N  +   C +   ++  +L   M+E G  P+  TYN LI  Y  
Sbjct: 556 LRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCI 615

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
                   E +  M  +G   D +TY ++I G      ++EA FL  ++V KG  L    
Sbjct: 616 RNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSS 675

Query: 450 FDSYL 454
           +++ +
Sbjct: 676 YNALI 680



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 16/221 (7%)

Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
            P+      L+DA CK   +V   E + + +  +++P   T+N+L            G +
Sbjct: 530 HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEK 589

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L+ M++ G  P+  TYN+ I  +C    +    +++  M  KG     P   TY I+I 
Sbjct: 590 LLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVV---PDGNTYNILIK 646

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +   M+E + L   M+  G    VS+Y  +++G     K  EA +  E+M  +G   
Sbjct: 647 GHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVA 706

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
           D   YN F  +  D    +  L L    IE      +QT N
Sbjct: 707 DREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKN 747


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 16/294 (5%)

Query: 181  NLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQ 227
            N L+  L    L+D AE +   +K     P+  TY+++             ++  EEM  
Sbjct: 770  NALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 829

Query: 228  MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             G+     TYNT I    K++M+ EA +L+  + ++G    SPT  TY  ++  L+++  
Sbjct: 830  KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF---SPTPCTYGPLLDGLLKDGN 886

Query: 288  MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E+  +L   M+  GC P+ + Y  +L G  +AG  E+  +  E M  +G  PDI +Y  
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 348  FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
             +  LC +   ++ L  + ++ ++G  P + TYN+LI    + G  + A   +++M+K+G
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 408  CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
             A ++ TY  +I  L    K  EA  + EE++ KG K     +++ +   SV G
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 25/253 (9%)

Query: 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243
           +DALC+ G VD A                      +   +EM Q G  P  ++YN+ I  
Sbjct: 353 VDALCQVGRVDEA----------------------LDVFDEMKQKGIIPQQYSYNSLISG 390

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           F KA     A +LF  M   G T   P   T+ + I    ++    +       M + G 
Sbjct: 391 FLKADRFNRALELFNHMNIHGPT---PNGYTHVLFINYHGKSGESLKALKRYELMKSKGI 447

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +PDV     VL G+   G++  A +   E+   G  PD +TY   +K      N DEA++
Sbjct: 448 VPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMK 507

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           ++  MIE  C P V   N LI M ++ G  + A++ ++E+ +        TY  ++ GL 
Sbjct: 508 IFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLG 567

Query: 424 DCSKVEEACFLLE 436
              KV+E   LLE
Sbjct: 568 REGKVKEVMQLLE 580



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 139/310 (44%), Gaps = 13/310 (4%)

Query: 144 YMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR- 202
           +M R+     P + L + L    +   V T    N +  L+ A  + G V     + +R 
Sbjct: 71  HMLRSAAAADPEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVFDLMQRQ 130

Query: 203 -VKNKVKPNANTYNILGMQ--------TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            +K  V      +  +G++         L  M + G   + +TYN  I    K+    EA
Sbjct: 131 IIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREA 190

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
            D+++ M   G     PT +TY+++++A  +    E    LLG M   G  P+V +Y   
Sbjct: 191 MDVYKAMAADGVV---PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTIC 247

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           +  +  AG++EEAY+ L +M  +G  PD+VT    +++LCD     +A  ++ +M     
Sbjct: 248 IRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQ 307

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P   TY  L+    + G+     E W+ +   G   +V +Y   +D L    +V+EA  
Sbjct: 308 KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALD 367

Query: 434 LLEEVVNKGL 443
           + +E+  KG+
Sbjct: 368 VFDEMKQKGI 377



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 16/214 (7%)

Query: 183  LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
            LLD L K G ++ AE +    ++   +PN   YNIL              +  E M++ G
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 230  HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              PD  +Y   IDT C    + +    F+ +   G     P   TY ++I  L ++ R+E
Sbjct: 937  MNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGL---EPDLITYNLLIHGLGKSGRLE 993

Query: 290  ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            E  SL   M   G  P++ TY  ++  +  AGK  EA K  EE+  KG+ P++ TYN  +
Sbjct: 994  EALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053

Query: 350  KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +    + + + A   YGRMI  GC P+  TY  L
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 25/335 (7%)

Query: 161  ILKQYTEKIKVKTQPEINALNLLLDAL---------CKCGLVDYAETICKRVKN-KVKPN 210
            ILK+   +  ++    I +  LLLD L         CK      A  + K+ +N  V   
Sbjct: 706  ILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLK 765

Query: 211  ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
              +YN L              +   EM ++G  PD FTY+  +D   K+  + +   + E
Sbjct: 766  TGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQE 825

Query: 259  FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
             M  KG      T  TY  +I  LV++  ++E  +L   +++ G  P   TY  +L+G+ 
Sbjct: 826  EMHNKGY---KSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLL 882

Query: 319  LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
              G +E+A    +EM   G  P+   YN  L       + ++   L+  M+E G  P ++
Sbjct: 883  KDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIK 942

Query: 379  TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +Y ++I      G  +     + ++   G   D+ TY ++I GL    ++EEA  L  ++
Sbjct: 943  SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002

Query: 439  VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              KG+      ++S ++ L   G      K+ + +
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 1037



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 9/254 (3%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E +   G   D+   +  I  FCK +    A +L +     G ++ +    +Y  +I  L
Sbjct: 720 ENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLKT---GSYNALICGL 776

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V  D ++    L   M   GC PD  TY  +L+ M  + ++E+  K  EEM NKGY    
Sbjct: 777 VDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTY 836

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  +  L  +K  DEA+ LY +++  G  P+  TY  L+    + G  + A   + E
Sbjct: 837 VTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDE 896

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M + GC  +   Y ++++G       E+ C L E +V +G+    + +        VI  
Sbjct: 897 MLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYT------VVIDT 950

Query: 463 LGAIHKLSDHMRKF 476
           L A  +L+D +  F
Sbjct: 951 LCADGRLNDGLSYF 964



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 118/282 (41%), Gaps = 28/282 (9%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG 218
           L  LK+Y         P++ A N +L  L K G +  A    KRV               
Sbjct: 433 LKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMA----KRV--------------- 473

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAI 277
                E+  MG +PDN TY   I    KA    EA  +F E +  +     +P       
Sbjct: 474 ---FHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR----CAPDVLAMNS 526

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L +  R  E + +   +      P   TY  +L G+   GKV+E  + LE M +  
Sbjct: 527 LIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNS 586

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           +PP+I+TYN  L  LC N   + AL +   M   GC P + +YN ++    + G  D AF
Sbjct: 587 FPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAF 646

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             + +M K+  A D  T C ++        ++EA   + E +
Sbjct: 647 WMFCQM-KKVLAPDYATVCTILPSFVRSGLMKEALHTVREYI 687



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 51/344 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           +K + E I+ +  P++ A+N L+D L K G  + A  I   +K   ++P   TYN L   
Sbjct: 506 MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAG 565

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     MQ LE M      P+  TYNT +D  CK   V  A D+   M   G    
Sbjct: 566 LGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCM-- 623

Query: 269 SPTAKTYAIMIVALVQNDRMEECF------------------SLLGHMINSGCLP----- 305
            P   +Y  ++  LV+  R++E F                  ++L   + SG +      
Sbjct: 624 -PDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHT 682

Query: 306 ------------DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
                       D S+   ++EG+      E++ +F E + + G   D +  +  ++  C
Sbjct: 683 VREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFC 742

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            +K    A  L  +   +G      +YN LI    +    D A E + EM + GC  D  
Sbjct: 743 KHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEF 802

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           TY +++D +    ++E+   + EE+ NKG K  Y  +++ +  L
Sbjct: 803 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGL 846



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 15/234 (6%)

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           NA TYN L             M   + M   G  P   TY+  +  F K R       L 
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M  +G     P   +Y I I  L Q  R+EE + +L  M   GC PDV T   +++ +
Sbjct: 230 GEMEARGV---RPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C AG++ +A     +M      PD VTY   L    D+ +      ++  +   G   +V
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNV 346

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
            +Y   +    ++G  D A + + EM ++G      +Y  +I G     +   A
Sbjct: 347 VSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRA 400



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEE--------- 224
           P I   N +LD LCK G V+YA + +     N   P+ ++YN +    ++E         
Sbjct: 589 PNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWM 648

Query: 225 MIQMGH--APDNFTYNTAIDTFCKARMVTEA-ADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             QM    APD  T  T + +F ++ ++ EA   + E++    S +   +  +   ++  
Sbjct: 649 FCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHS---LMEG 705

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           +++ D  E+      ++ +SG L D      ++   C   +   A++ +++  N G    
Sbjct: 706 ILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLK 765

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             +YN  +  L D    D A  L+  M  +GC P   TY++++    +    +   +   
Sbjct: 766 TGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQE 825

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +G      TY  +I GL     ++EA  L  +++++G 
Sbjct: 826 EMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF 867



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%)

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V T+  V   + + G +  A   L  M   G   +  TYN  +  L  +    EA+ +Y
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M   G  P+V+TY++L+  + +  + +       EM+ RG   +V +Y + I  L   
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 426 SKVEEACFLLEEVVNKGLK 444
            ++EEA  +L ++  +G K
Sbjct: 255 GRLEEAYRILRKMEEEGCK 273


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 16/294 (5%)

Query: 181  NLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQ 227
            N L+  L    L+D AE +   +K     P+  TY+++             ++  EEM  
Sbjct: 770  NALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 829

Query: 228  MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             G+     TYNT I    K++M+ EA +L+  + ++G    SPT  TY  ++  L+++  
Sbjct: 830  KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF---SPTPCTYGPLLDGLLKDGN 886

Query: 288  MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E+  +L   M+  GC P+ + Y  +L G  +AG  E+  +  E M  +G  PDI +Y  
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 348  FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
             +  LC +   ++ L  + ++ ++G  P + TYN+LI    + G  + A   +++M+K+G
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 408  CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
             A ++ TY  +I  L    K  EA  + EE++ KG K     +++ +   SV G
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 25/253 (9%)

Query: 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243
           +DALC+ G VD A                      +   +EM Q G  P  ++YN+ I  
Sbjct: 353 VDALCQVGRVDEA----------------------LDVFDEMKQKGIIPQQYSYNSLISG 390

Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
           F KA     A +LF  M   G T   P   T+ + I    ++    +       M + G 
Sbjct: 391 FLKADRFNRALELFNHMNIHGPT---PNGYTHVLFINYHGKSGESLKALKRYELMKSKGI 447

Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
           +PDV     VL G+   G++  A +   E+   G  PD +TY   +K      N DEA++
Sbjct: 448 VPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMK 507

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
           ++  MIE  C P V   N LI M ++ G  + A++ ++E+ +        TY  ++ GL 
Sbjct: 508 IFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLG 567

Query: 424 DCSKVEEACFLLE 436
              KV+E   LLE
Sbjct: 568 REGKVKEVMQLLE 580



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 139/310 (44%), Gaps = 13/310 (4%)

Query: 144 YMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR- 202
           +M R+     P + L + L    +   V T    N +  L+ A  + G V     + +R 
Sbjct: 71  HMLRSAAAADPEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVFDLMQRQ 130

Query: 203 -VKNKVKPNANTYNILGMQ--------TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            +K  V      +  +G++         L  M + G   + +TYN  I    K+    EA
Sbjct: 131 IIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREA 190

Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
            D+++ M   G     PT +TY+++++A  +    E    LLG M   G  P+V +Y   
Sbjct: 191 MDVYKAMAADGVV---PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTIC 247

Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
           +  +  AG++EEAY+ L +M  +G  PD+VT    +++LCD     +A  ++ +M     
Sbjct: 248 IRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQ 307

Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
            P   TY  L+    + G+     E W+ +   G   +V +Y   +D L    +V+EA  
Sbjct: 308 KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALD 367

Query: 434 LLEEVVNKGL 443
           + +E+  KG+
Sbjct: 368 VFDEMKQKGI 377



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 16/214 (7%)

Query: 183  LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
            LLD L K G ++ AE +    ++   +PN   YNIL              +  E M++ G
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 230  HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              PD  +Y   IDT C    + +    F+ +   G     P   TY ++I  L ++ R+E
Sbjct: 937  MNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGL---EPDLITYNLLIHGLGKSGRLE 993

Query: 290  ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            E  SL   M   G  P++ TY  ++  +  AGK  EA K  EE+  KG+ P++ TYN  +
Sbjct: 994  EALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053

Query: 350  KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +    + + + A   YGRMI  GC P+  TY  L
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 25/335 (7%)

Query: 161  ILKQYTEKIKVKTQPEINALNLLLD---------ALCKCGLVDYAETICKRVKN-KVKPN 210
            ILK+   +  ++    I +  LLLD          LCK      A  + K+ +N  V   
Sbjct: 706  ILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLK 765

Query: 211  ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
              +YN L              +   EM ++G  PD FTY+  +D   K+  + +   + E
Sbjct: 766  TGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQE 825

Query: 259  FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
             M  KG      T  TY  +I  LV++  ++E  +L   +++ G  P   TY  +L+G+ 
Sbjct: 826  EMHNKGY---KSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLL 882

Query: 319  LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
              G +E+A    +EM   G  P+   YN  L       + ++   L+  M+E G  P ++
Sbjct: 883  KDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIK 942

Query: 379  TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            +Y ++I      G  +     + ++   G   D+ TY ++I GL    ++EEA  L  ++
Sbjct: 943  SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002

Query: 439  VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
              KG+      ++S ++ L   G      K+ + +
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 1037



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 145/344 (42%), Gaps = 51/344 (14%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--- 217
           +K + E I+ +  P++ A+N L+D L K G  + A  I   +K   ++P   TYN L   
Sbjct: 506 MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAG 565

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     MQ LE M      P+  TYNT +D  CK   V  A D+   M   G    
Sbjct: 566 LGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCM-- 623

Query: 269 SPTAKTYAIMIVALVQNDRMEECF------------------SLLGHMINSGCLP----- 305
            P   +Y  ++  LV+ DR++E F                  ++L   + SG +      
Sbjct: 624 -PDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHT 682

Query: 306 ------------DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
                       D S+   ++EG+      E++ +F E + + G   D +  +  ++ LC
Sbjct: 683 VREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLC 742

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
            +K    A  L  +   +G      +YN LI    +    D A E + EM + GC  D  
Sbjct: 743 KHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEF 802

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
           TY +++D +    ++E+   + EE+ NKG K  Y  +++ +  L
Sbjct: 803 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGL 846



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 9/254 (3%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E +   G   D+   +  I   CK +    A +L +     G ++ +    +Y  +I  L
Sbjct: 720 ENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKT---GSYNALICGL 776

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V  D ++    L   M   GC PD  TY  +L+ M  + ++E+  K  EEM NKGY    
Sbjct: 777 VDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTY 836

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  +  L  +K  DEA+ LY +++  G  P+  TY  L+    + G  + A   + E
Sbjct: 837 VTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDE 896

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M + GC  +   Y ++++G       E+ C L E +V +G+    + +        VI  
Sbjct: 897 MLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYT------VVIDT 950

Query: 463 LGAIHKLSDHMRKF 476
           L A  +L+D +  F
Sbjct: 951 LCADGRLNDGLSYF 964



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 117/282 (41%), Gaps = 28/282 (9%)

Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG 218
           L  LK+Y         P++ A N +L  L K G +  A    KRV               
Sbjct: 433 LKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMA----KRV--------------- 473

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAI 277
                E+  MG +PDN TY   I    KA    EA  +F E +  +     +P       
Sbjct: 474 ---FHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR----CAPDVLAMNS 526

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           +I  L +  R  E + +   +      P   TY  +L G+   GKV+E  + LE M +  
Sbjct: 527 LIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNS 586

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
           +PP+I+TYN  L  LC N   + AL +   M   GC P + +YN ++    +    D AF
Sbjct: 587 FPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAF 646

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             + +M K+  A D  T C ++        ++EA   + E +
Sbjct: 647 WMFCQM-KKVLAPDYATVCTILPSFVRSGLMKEALHTVREYI 687



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           NA TYN L             M   + M   G  P   TY+  +  F K R       L 
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M  +G     P   +Y I I  L Q  R+EE + +L  M   GC PDV T   +++ +
Sbjct: 230 GEMEARGV---RPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C AG++ +A     +M      PD VTY   L    D+ +      ++  +   G   +V
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNV 346

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            +Y   +    ++G  D A + + EM ++G      +Y  +I G     +   A  L   
Sbjct: 347 VSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNH 406

Query: 438 V 438
           +
Sbjct: 407 M 407



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 124/282 (43%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTLEE--------- 224
           P I   N +LD LCK G V+YA + +     N   P+ ++YN +    ++E         
Sbjct: 589 PNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWM 648

Query: 225 MIQMGH--APDNFTYNTAIDTFCKARMVTEA-ADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             QM    APD  T  T + +F ++ ++ EA   + E++    S +   +  +   ++  
Sbjct: 649 FCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHS---LMEG 705

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           +++ D  E+      ++ +SG L D      ++  +C   +   A++ +++  N G    
Sbjct: 706 ILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLK 765

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             +YN  +  L D    D A  L+  M  +GC P   TY++++    +    +   +   
Sbjct: 766 TGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQE 825

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +G      TY  +I GL     ++EA  L  +++++G 
Sbjct: 826 EMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF 867



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%)

Query: 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
           +V T+  V   + + G +  A   L  M   G   +  TYN  +  L  +    EA+ +Y
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
             M   G  P+V+TY++L+  + +  + +       EM+ RG   +V +Y + I  L   
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 426 SKVEEACFLLEEVVNKGLK 444
            ++EEA  +L ++  +G K
Sbjct: 255 GRLEEAYRILRKMEEEGCK 273


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 24/300 (8%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E +     P++   + L+      G L D  +   K +   +KP+  T+NIL      
Sbjct: 201 YSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCK 260

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G      M++ G  P+  TY + +D +C  + V +A  +F  M   G    +P 
Sbjct: 261 DGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGV---NPD 317

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y IMI    +  +++E  +L   M     +P+V TY  +++G+C +GK+  A K ++
Sbjct: 318 TQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVD 377

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--------GCWPSVQTYNML 383
           EM ++G PPDI+TY+  L  LC N   D+A+ L  ++ +         G    V  Y ++
Sbjct: 378 EMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVM 437

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           I  +   G  + A     +M+  G   D  TY ++I  LF   + + A  LL E++ +GL
Sbjct: 438 IQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 497



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 27/262 (10%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
           L++ LCK G    A  + +RV  K V+PN                          YNT I
Sbjct: 149 LINGLCKVGQARAALQLLRRVDGKLVQPNV-----------------------VMYNTII 185

Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           D+ CK ++V EA DL+  M ++G    SP   TY+ +I       ++++   L   MI  
Sbjct: 186 DSMCKVKLVNEAFDLYSEMVSEGI---SPDVVTYSALISGFFIVGKLKDAIDLFNKMILE 242

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
              PDV T+  +++G C  GK++E       M  +G  P++VTY   +   C  K  ++A
Sbjct: 243 NIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKA 302

Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421
             ++  M + G  P  Q+YN++I+ + ++ + D A   + +M  +    +V TY  +IDG
Sbjct: 303 NSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDG 362

Query: 422 LFDCSKVEEACFLLEEVVNKGL 443
           L    K+  A  L++E+ ++G+
Sbjct: 363 LCKSGKISYALKLVDEMHDRGV 384



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 3/239 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           +Y T I+  CK   V +A    + +R     +  P    Y  +I ++ +   + E F L 
Sbjct: 145 SYGTLINGLCK---VGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLY 201

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M++ G  PDV TY  ++ G  + GK+++A     +M  +   PD+ T+N  +   C +
Sbjct: 202 SEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD 261

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
               E   ++  M++ G  P+V TY  L+  Y  + + + A   ++ M + G   D  +Y
Sbjct: 262 GKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSY 321

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
            +MI+G     KV+EA  L +++  K +      + S +  L   G +    KL D M 
Sbjct: 322 NIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMH 380



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 25/218 (11%)

Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
           Q    P  F +   + +  K      A  L   M  KG  I+S    T  I+I    Q  
Sbjct: 53  QKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKG--IASNLV-TLNILINCFSQLG 109

Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
           +    FS+  +++  G  P+V T   +++G+CL                       V+Y 
Sbjct: 110 QNPLSFSVFANILKKGYDPNVITLTTLIKGLCLK----------------------VSYG 147

Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
             +  LC       AL+L  R+      P+V  YN +I    ++   + AF+ + EM   
Sbjct: 148 TLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSE 207

Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           G + DV TY  +I G F   K+++A  L  +++ + +K
Sbjct: 208 GISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIK 245


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 24/304 (7%)

Query: 183 LLDALCKCGLVD-----YAETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
           ++D+LCK   V      Y+E I K     + PN  T++IL             M  L  M
Sbjct: 153 IIDSLCKGKFVTDAYRLYSEMIAK----GIFPNVYTFSILVDALCKDRKGKQAMNLLAMM 208

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           ++ G  P+  TY   +D +C    V +A ++F  M  +G     P    Y I+I  L + 
Sbjct: 209 MKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGV---EPNVWCYNIIINGLCKK 265

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
            R++E  +L   M      PDV TY  +++G+C  GK+  + + ++EM + G   DI+TY
Sbjct: 266 KRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITY 325

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  L  LC N + D+A+ L   + + G  P+V TY  LI    + G  + A+  + E+  
Sbjct: 326 NSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILT 385

Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
            G    V TY VMI+GL      +EA  LL  + +         +++ +  LS  G+   
Sbjct: 386 EGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVK 445

Query: 466 IHKL 469
            +KL
Sbjct: 446 TNKL 449



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
           D   Y+T ID+ CK + VT+A  L+  M  KG     P   T++I++ AL ++ + ++  
Sbjct: 146 DVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIF---PNVYTFSILVDALCKDRKGKQAM 202

Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
           +LL  M+  G  P+V TY  +++G CL  +V +A      M  +G  P++  YN  +  L
Sbjct: 203 NLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGL 262

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C  K  DEA+ L+  M      P V TYN+LI    +LG+   + E   EM   G   D+
Sbjct: 263 CKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDI 322

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            TY  ++  L     +++A  L++E+ ++G++
Sbjct: 323 ITYNSLLHALCKNHHLDQAITLVKEIKDQGIQ 354



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 20/314 (6%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---- 217
           + Y+E I     P +   ++L+DALCK      A   +   +K  VKPN  TY  +    
Sbjct: 168 RLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGY 227

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +     M+Q G  P+ + YN  I+  CK + V EA +LF+ M  K     +
Sbjct: 228 CLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKI---N 284

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY I+I  L +  ++     L+  M + G   D+ TY  +L  +C    +++A   
Sbjct: 285 PDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITL 344

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           ++E+ ++G  P++ TY   +  LC +   ++A  ++  ++  G   +V TYN++I+   +
Sbjct: 345 VKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCK 404

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
            G  D A      M+   C  D  +Y  +I  L +  +  +   LL  ++ +GL    +K
Sbjct: 405 KGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLSKRLKK 464

Query: 450 FDSYLMQLSVIGDL 463
                + ++ I DL
Sbjct: 465 ----KVNMTTIADL 474



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 148/321 (46%), Gaps = 19/321 (5%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNILG--------- 218
           +++   P I   N +L +L K      A ++ ++++ N +KP+  T  IL          
Sbjct: 2   LQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGI 61

Query: 219 ---MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                 L ++++MG+ P++ T+ T I   C      EA    + +   G  +   +   Y
Sbjct: 62  TFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVS---Y 118

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           AI++  L    +M E  + +  +  +    DV  Y  +++ +C    V +AY+   EM  
Sbjct: 119 AILMNGLC---KMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIA 175

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           KG  P++ T++  +  LC ++ G +A+ L   M++ G  P+V TY  ++  Y  + + + 
Sbjct: 176 KGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNK 235

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           A   ++ M + G   +V  Y ++I+GL    +V+EA  L +E+  K +      ++  + 
Sbjct: 236 ALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILID 295

Query: 456 QLSVIGDLGAIHKLSDHMRKF 476
            L  +G +    +L D MR  
Sbjct: 296 GLCKLGKISTSLELVDEMRSI 316


>gi|255660982|gb|ACU25660.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 350

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%), Gaps = 16/277 (5%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNILGM----------QTLEEMIQM 228
           +L+   CK G +D +  + +  + K   V   A +  I G+            L  MI+ 
Sbjct: 73  ILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKS 132

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+   YNT I+    A    +A  +F   R  G+   SPT  TY  +I  L +N+  
Sbjct: 133 GCKPNAHVYNTLINGLVGASKFEDAIRVF---REMGTMHCSPTIITYNTLINGLCKNEMF 189

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E ++L+  +++ G  P V TY  +++G+CL  KVE+A +   ++ +KG+ PD+  +N  
Sbjct: 190 GEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNIL 249

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC       AL LY  M    C P++ ++N L+  +++ G+   A   W  + + G 
Sbjct: 250 IHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGL 309

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             D+ +Y + + GL  C+++ +A   L + V K + L
Sbjct: 310 EPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 346



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 3/209 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E M + G   D+ TY   +  FCK   + ++  + E    KG  +    A  Y+ MI  L
Sbjct: 57  ELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVD---AFAYSAMINGL 113

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   ++   S+L  MI SGC P+   Y  ++ G+  A K E+A +   EMG     P I
Sbjct: 114 CKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTI 173

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +TYN  +  LC N+   EA  L   +++ G  P V TY+ML+       + + A + W++
Sbjct: 174 ITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQ 233

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           +  +G   DV  + ++I GL    K++ A
Sbjct: 234 VTSKGFKPDVQMHNILIHGLCSVGKMQLA 262



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
           N  ++ + +   + +  +L+E M ++G+     +  ++ IM+  L  ND+++E  S+   
Sbjct: 3   NAMLNGYFRVAKIKDCFELWEMMGSEGNR----SVSSFNIMMRGLFDNDKVDEVISIWEL 58

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M  SG + D  TY  ++ G C  G ++++   LE    KG   D   Y+  +  LC   N
Sbjct: 59  MKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEAN 118

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            D A+ +   MI+ GC P+   YN LI+      + + A   + EM    C+  + TY  
Sbjct: 119 LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 178

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGL 443
           +I+GL       EA  L++E+++KGL
Sbjct: 179 LINGLCKNEMFGEAYNLVKELLDKGL 204



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +L G     K+++ ++  E MG++G    + ++N  ++ L DN   DE + ++  M + G
Sbjct: 5   MLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNDKVDEVISIWELMKKSG 63

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
                 TY +L+  + + G  D +       +++G   D   Y  MI+GL   + ++ A 
Sbjct: 64  FVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRAV 123

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +L  ++  G K     ++      ++I  L    K  D +R F
Sbjct: 124 SVLNGMIKSGCKPNAHVYN------TLINGLVGASKFEDAIRVF 161


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 25/280 (8%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           K   + IK K  P++ A + L+D   K G +  AE + K                     
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK--------------------- 341

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
            EMIQ G +PD  TY + ID FCK   + +A  + + M +KG     P  +T+ I+I   
Sbjct: 342 -EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGC---GPNIRTFNILINGY 397

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            + + +++   L   M   G + D  TY  +++G C  GK+E A +  +EM ++   PDI
Sbjct: 398 CKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDI 457

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V+Y   L  LCDN   ++AL ++ ++ +      +  YN++I       + D A++ +  
Sbjct: 458 VSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 517

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +  +G   DV TY +MI GL     + EA  L  ++   G
Sbjct: 518 LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           ++++D LCK G +D A  +   ++ K  K +   Y  L            G + L +MI+
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD   ++  ID F K   + EA +L + M  +G    SP   TY  +I    + ++
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI---SPDTVTYTSLIDGFCKENQ 367

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +++   +L  M++ GC P++ T+  ++ G C A  +++  +   +M  +G   D VTYN 
Sbjct: 368 LDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNT 427

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            ++  C+    + A  L+  M+     P + +Y +L+    + GEP+ A E + +++K  
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              D+  Y ++I G+ + SKV++A  L   +  KG+K   + ++  +  L   G L
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSL 543



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 136/324 (41%), Gaps = 51/324 (15%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL---------- 217
           IK+  +P+    + L++ LC  G V  A E + + V+   KP   T N L          
Sbjct: 134 IKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKV 193

Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
              +  ++ M++ G  P+  TY   +   CK+     A +L   M  +   +    A  Y
Sbjct: 194 SDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD---AVKY 250

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL----- 330
           +I+I  L ++  ++  F+L   M   G   D+  Y  ++ G C AG+ ++  K L     
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310

Query: 331 ------------------------------EEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
                                         +EM  +G  PD VTY   +   C     D+
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A  +   M+  GC P+++T+N+LI+ Y +    D   E + +M  RG   D  TY  +I 
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430

Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
           G  +  K+E A  L +E+V++ ++
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVR 454



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 16/273 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E I+    P+      L+D  CK   +D A  +   + +K   PN  T+NIL      
Sbjct: 340 HKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCK 399

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G++   +M   G   D  TYNT I  FC+   +  A +LF+ M ++      P 
Sbjct: 400 ANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV---RPD 456

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y I++  L  N   E+   +   +  S    D+  Y  ++ GMC A KV++A+    
Sbjct: 457 IVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 516

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            +  KG  PD+ TYN  +  LC   +  EA  L+ +M E G  P+  TYN+LI  +   G
Sbjct: 517 SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEG 576

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
           +   + +   E+ + G + D  T  +++D L D
Sbjct: 577 DATKSAKLIEEIKRCGFSVDASTVKMVVDMLSD 609



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 140/309 (45%), Gaps = 23/309 (7%)

Query: 163 KQYTEKIKVKTQPEINA-------LNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTY 214
           KQY   + +  Q E+         L+++++  C+C  +  A   + K +K   +P+  T+
Sbjct: 86  KQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTF 145

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           + L             ++ ++ M++MGH P   T N  ++  C    V++A  L + M  
Sbjct: 146 STLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE 205

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
            G     P   TY  ++  + ++ +      LL  M       D   Y  +++G+C  G 
Sbjct: 206 TGF---QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           ++ A+    EM  KG+  DI+ Y   ++  C     D+  +L   MI+    P V  ++ 
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI  + + G+   A E   EM +RG + D  TY  +IDG    +++++A  +L+ +V+KG
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 443 LKLPYRKFD 451
                R F+
Sbjct: 383 CGPNIRTFN 391



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 3/223 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM +    P    ++       + +      DL + M  KG    +    T +IMI  
Sbjct: 60  FQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGI---AHNLYTLSIMINC 116

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  ++   FS +G +I  G  PD  T+  ++ G+CL G+V EA + ++ M   G+ P 
Sbjct: 117 CCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPT 176

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++T N  +  LC N    +A+ L  RM+E G  P+  TY  ++ +  + G+   A E   
Sbjct: 177 LITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLR 236

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +M++R    D   Y ++IDGL     ++ A  L  E+  KG K
Sbjct: 237 KMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK 279



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+   C+ G ++ A+ + +  V  +V+P+  +Y IL             ++  E++ +
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK 485

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
                D   YN  I   C A  V +A DLF  +  KG     P  KTY IMI  L +   
Sbjct: 486 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV---KPDVKTYNIMIGGLCKKGS 542

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E   L   M   G  P+  TY  ++      G   ++ K +EE+   G+  D  T   
Sbjct: 543 LSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKM 602

Query: 348 FLKVLCDNK 356
            + +L D +
Sbjct: 603 VVDMLSDGR 611


>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 376

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%), Gaps = 16/277 (5%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNK---VKPNANTYNILGM----------QTLEEMIQM 228
           +L+   CK G +D +  + +  + K   V   A +  I G+            L  MI+ 
Sbjct: 99  ILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKS 158

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+   YNT I+    A    +A  +F   R  G+   SPT  TY  +I  L +N+  
Sbjct: 159 GCKPNAHVYNTLINGLVGASKFEDAIRVF---REMGTMHCSPTIITYNTLINGLCKNEMF 215

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E ++L+  +++ G  P V TY  +++G+CL  KVE+A +   ++ +KG+ PD+  +N  
Sbjct: 216 GEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNIL 275

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC       AL LY  M    C P++ ++N L+  +++ G+   A   W  + + G 
Sbjct: 276 IHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGL 335

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             D+ +Y + + GL  C+++ +A   L + V K + L
Sbjct: 336 EPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +E+++   +PD   YN  ++ + +   + +  +L+E M ++G+     +  ++ IM+  L
Sbjct: 14  KEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR----SVSSFNIMMRGL 69

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             ND+++E  S+   M  SG + D  TY  ++ G C  G ++++   LE    KG   D 
Sbjct: 70  FDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDA 129

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
             Y+  +  LC   N D A+ +   MI+ GC P+   YN LI+      + + A   + E
Sbjct: 130 FAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE 189

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M    C+  + TY  +I+GL       EA  L++E+++KGL
Sbjct: 190 MGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL 230



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 7/179 (3%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++ S   PD   Y  +L G     K+++ ++  E MG++G    + ++N  ++ L DN  
Sbjct: 16  IVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNDK 74

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DE + ++  M + G      TY +L+  + + G  D +       +++G   D   Y  
Sbjct: 75  VDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSA 134

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           MI+GL   + ++ A  +L  ++  G K     ++      ++I  L    K  D +R F
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYN------TLINGLVGASKFEDAIRVF 187



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  ++E    P    YN +++ YF + +    FE W  M   G  + V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ +M+ GLFD  KV+E   + E +   G 
Sbjct: 60  SSFNIMMRGLFDNDKVDEVISIWELMKKSGF 90


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 141/352 (40%), Gaps = 87/352 (24%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+I A N+ L  L   G +D A E   K VKN  KP+  TY I+             +Q 
Sbjct: 112 PDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQF 171

Query: 222 LEEMIQMGHAPDN------------------------------------FTYNTAIDTFC 245
             +MI  G +PDN                                      YN  I  FC
Sbjct: 172 WRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFC 231

Query: 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305
           +A  + +A  +  FMR  G     P   TY + +        +++   LL  M  SG  P
Sbjct: 232 RAGRIDKAQAIKSFMRRNGC---EPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEP 288

Query: 306 DVSTYKEVLEGMCLA-----------------------------------GKVEEAYKFL 330
           DV +Y ++L+G+C                                     G    AYK  
Sbjct: 289 DVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLF 348

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
           EEMG KG PPD+VT+  F+K      + + A +L  +M E+G  P    Y  +I    + 
Sbjct: 349 EEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKS 408

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           G+ + A   + +M ++G + DV ++  +I+G   CS+V EA  L EE+ N+G
Sbjct: 409 GKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRG 460



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 136/326 (41%), Gaps = 38/326 (11%)

Query: 116 LAYNLMIDILSSTKYKAKQ--FRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173
           LAY L+ID++ S + K     +  + S      R +K           +K +  +     
Sbjct: 202 LAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKA--------QAIKSFMRR--NGC 251

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNILGMQTLEEMIQMGHAP 232
           +P++   N+ L+  C   ++D A+ + K + ++ ++P+  +YN      L + I  G+ P
Sbjct: 252 EPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYN-----QLLKGICKGNCP 306

Query: 233 DN-----------------FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           D                   +YNT I  FCK    T A  LFE M  KG     P   T+
Sbjct: 307 DKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGI---PPDVVTF 363

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            I I A +          LL  M   G  PD   Y  +++ +C +GKVE A+    +M  
Sbjct: 364 TIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVE 423

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +G  PD++++N  +   C      EA+ LY  M   G +P   TY ++I    E  +   
Sbjct: 424 QGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISI 483

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDG 421
           A   W +M  +G   D      +I G
Sbjct: 484 ACMVWGQMMDKGFTLDRAIAQTLIRG 509



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 111/259 (42%), Gaps = 6/259 (2%)

Query: 217 LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           L ++  E++++ G  PD  TY   I   CK +    A   +  M  KG    SP  K   
Sbjct: 132 LALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGF---SPDNKACG 188

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
            ++V L    +++  + L+  ++ SG +      Y  ++ G C AG++++A      M  
Sbjct: 189 AIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRR 248

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
            G  PD+VTYN FL   CD    D+A +L   M   G  P V +YN L+    +   PD 
Sbjct: 249 NGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDK 308

Query: 396 AFETW-HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           A+    ++M  +G   DV +Y  +I           A  L EE+  KG+      F  ++
Sbjct: 309 AYLLMTNKMWPKGLC-DVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFI 367

Query: 455 MQLSVIGDLGAIHKLSDHM 473
                 G      KL D M
Sbjct: 368 KAFLGKGSFNIAKKLLDQM 386



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 11/258 (4%)

Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
           C+   +DY   I   + +     AN Y         +M   G +  +FTY+  I   CK 
Sbjct: 40  CRVFSIDYNRFIGVLINHSRFDLANHY-------YSQMGTRGFSLSSFTYSRFITGLCKV 92

Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
           +  T   +L   M T       P    + I +  L    R++    +   ++ +G  PDV
Sbjct: 93  KNFTFIDELLHDMETLNCL---PDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDV 149

Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
            TY  ++ G+C   K + A +F  +M +KG+ PD       +  LCD +  D A  L   
Sbjct: 150 VTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIID 209

Query: 368 MIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
           +++ G    S   YN LIS +   G  D A      M + GC  D+ TY V ++   D  
Sbjct: 210 VMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDEL 269

Query: 427 KVEEACFLLEEVVNKGLK 444
            +++A  LL+ +   G++
Sbjct: 270 MLDDAKKLLKLMERSGIE 287



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 4/240 (1%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           Y + I  + KA ++ +A  +F+ M      + S     Y   I  L+ + R +       
Sbjct: 12  YRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSID---YNRFIGVLINHSRFDLANHYYS 68

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M   G      TY   + G+C         + L +M      PDI  +N +L +L    
Sbjct: 69  QMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEG 128

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             D AL ++ ++++ G  P V TY ++I    ++ + D A + W +M  +G + D     
Sbjct: 129 RIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACG 188

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKG-LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            ++ GL D  KV+ A  L+ +V+  G +KL    +++ +      G +     +   MR+
Sbjct: 189 AIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRR 248


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 146/343 (42%), Gaps = 47/343 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P +  LN LL AL +  +    E++  R+  +   N  TY  L              Q L
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPAR---NLRTYTTLINAYCLAGDIPAAKQHL 95

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------------------ 264
             ++  G APD++ Y + +  +C+A M+T A  +F  M  +G                  
Sbjct: 96  TSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGA 155

Query: 265 --------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                         +   +P    YA M+  L +  R EE   LL   +++G  P++  Y
Sbjct: 156 GMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G C AG++E A K  E M      P++ TY   +  LC +   + A+ L+ RM+E
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI      G    AF   H M+  G   +  T+ V+ID L    KVEE
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           A   L  +V KG+K+    + S +  L   G + A  +L   M
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKM 378



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 19/302 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------G 218
           +  P +     L+  LCK G V+ A  +  R V+  ++PN  TY  L             
Sbjct: 242 RCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA 301

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + L  M   G  P+++T++  ID  CK   V EA      +  KG  ++      Y  +
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE---VVYTSL 358

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  +++    L+  MI+ G +PD  +Y  +++G+C   K+ +A   LE+M  KG 
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
               VTY   +  L      +   +++ +MI  G  P + TY + +  Y E G  + A  
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              +M  RG   ++ TY  +I G  +   V +A    E +V KG K      DSY + L 
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWK---PNEDSYTVLLR 535

Query: 459 VI 460
           ++
Sbjct: 536 LV 537



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+   YN  ID +C A  +  A  +FE M        SP  +TY  +I  L ++ ++
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMD---GNRCSPNVRTYTELIHGLCKSGKV 263

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L   M+ +G  P+V TY  +++G C  G ++ A++ L  M   G  P+  T++  
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC  +  +EA    G +++ G   +   Y  LI    + G+ D A E   +M   G 
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             D  +Y  +IDGL    K+ +A  +LE+++ KG++
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ 419



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 136/284 (47%), Gaps = 18/284 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P I   N L+D  C  G +++A  + + +  N+  PN  TY  L             M 
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M++ G  P+  TY   I   C    +  A  L   M T G     P   T++++I 
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV---PNDWTFSVLID 325

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL + +++EE    LG ++  G   +   Y  +++G+C  GK++ A + +++M ++G+ P
Sbjct: 326 ALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVP 385

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-SMYFELGEPDGAFET 399
           D  +Y+  +  LC  K   +A  +   M+E G   S  TY ++I  +  E+G  +G  + 
Sbjct: 386 DAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGS-EGPKKI 444

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +M   G   D+ TY V +    +  ++E+A  ++ ++V++G+
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 19/284 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--GM----------QT 221
           P     ++L+DALCK   V+ A+  +   VK  VK N   Y  L  G+          + 
Sbjct: 315 PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADEL 374

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++MI  G  PD  +Y++ ID  C+ + +++A  + E M  KG   +SP   TY I+I  
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ-ASPV--TYTIIIDE 431

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+    E    +   MI +G  PD+ TY   +   C  G++E+A   + +M ++G  P+
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  ++   +     +A   +  M+  G  P+  +Y +L+ +  +    D + + W 
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551

Query: 402 EMDKRGCAQ---DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
             D +   +   D   + ++I GL     V E   LL  +   G
Sbjct: 552 IADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHG 595



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 13/176 (7%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL---- 217
           K + + I     P+I    + + + C+ G ++ AE+ I + V   V PN  TYN L    
Sbjct: 443 KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                      T E M+  G  P+  +Y   +    K      + D+++    K    S+
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESN 562

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
                + I+I  L+Q   + E  SLL  M   G  P  +    +   + +  +V+E
Sbjct: 563 YDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEVQE 618


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 16/290 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------ 217
           + E +    QP++   ++L+D LCK G V  A+ + +  ++  + PN  TYN L      
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   +    M   G  PD  +Y T I+ +CK   V EA +L+  M   G    SP 
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGK---SPN 411

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  ++  L Q  ++ +   L G M   G   +   Y   L+G+C    + EA +   
Sbjct: 412 VTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFN 471

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           E+ +  +  +I  Y+C +  LC     + A  L+ ++ + G  P V TYN++I  + ++G
Sbjct: 472 ELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVG 531

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           + D A   + +M++ GC  D+  Y  ++ G  + +K+EE   LL ++V K
Sbjct: 532 QVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQK 581



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 144/328 (43%), Gaps = 16/328 (4%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------ 217
           Y E       P++  L++L + LC    V  A   +   ++    PN  TY  L      
Sbjct: 114 YNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCM 173

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS--- 268
                   +    M ++G  P+  TY T I   C+   V  A  L + M    S      
Sbjct: 174 EHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNC 233

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P   TY+I+I  L +  R +E   L   M   G +PDV +Y  ++ G C AGK +++  
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +EM ++G  PD+VT++  +  LC      EA +L   MI+ G  P++ TYN LI  + 
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
            +G+ + A E +  M  +G   D  +Y  +I+G     KV+EA  L  E++  G      
Sbjct: 354 MVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVT 413

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            + + L  L   G +G   KL   M+ +
Sbjct: 414 TYGTLLKGLFQKGKVGDAKKLFGVMKTY 441



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 22/313 (7%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-------KPNANTYNIL----- 217
           K+   P       L+  LC+ G V+ A  + K + N         KP   TY+I+     
Sbjct: 189 KLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLC 248

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                    +  EEM   G  PD  +Y+T I  FC A    ++  LF+ M  +G     P
Sbjct: 249 KVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGV---QP 305

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
              T++++I  L +  ++ E   LL  MI  G +P++ TY  +++G C+ G +  A +  
Sbjct: 306 DMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELF 365

Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
             M +KG  PD ++Y   +   C      EA+ LY  M++VG  P+V TY  L+   F+ 
Sbjct: 366 LSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQK 425

Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           G+   A + +  M   G + +   Y + +DGL     + EA  L  E+ +   KL    +
Sbjct: 426 GKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY 485

Query: 451 DSYLMQLSVIGDL 463
              +  L   G L
Sbjct: 486 SCLIDGLCKAGKL 498



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 126/261 (48%), Gaps = 16/261 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P +   N L+D  C  G ++ A  +   + +K ++P+  +Y  L             M  
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM+Q+G +P+  TY T +    +   V +A  LF  M+T G + +S   + Y I +  
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANS---QIYGIFLDG 456

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +ND + E   L   + +     ++  Y  +++G+C AGK+E A++  E++  +G  PD
Sbjct: 457 LCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPD 516

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTYN  +   C     D A  L+ +M E GC P +  YN L+  + E  + +   +  H
Sbjct: 517 VVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLH 576

Query: 402 EMDKRGCAQDVDTYCVMIDGL 422
           +M ++  + +  +  +++D L
Sbjct: 577 KMVQKDVSPNAASCTIVVDML 597



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 7/205 (3%)

Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
           CK   +T A   F F      +   P   ++  ++  L + +   + FSL   M  +G  
Sbjct: 65  CKTGNIT-AIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLS 123

Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
           PD+ T   +   +C   +V EA   +  +  +GY P++VTY   +K LC      EA RL
Sbjct: 124 PDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRL 183

Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----DKRG--CAQDVDTYCVM 418
           + RM ++GC P+  TY  LI    + G  + A +   EM     + G  C   V TY ++
Sbjct: 184 FLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSII 243

Query: 419 IDGLFDCSKVEEACFLLEEVVNKGL 443
           IDGL    + +EA  L EE+  +G+
Sbjct: 244 IDGLCKVGREDEAKELFEEMKAQGM 268



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 35/190 (18%)

Query: 142 LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK 201
           LD + +N+ +F  ++ L   LK Y  K+ ++        + L+D LCK G ++ A     
Sbjct: 454 LDGLCKNDCLFEAME-LFNELKSYNFKLNIEN------YSCLIDGLCKAGKLETA----- 501

Query: 202 RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
                             +  E++ Q G  PD  TYN  I  FCK   V  A  LFE M 
Sbjct: 502 -----------------WELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKME 544

Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
             G T   P    Y  ++    + +++EE   LL  M+     P+ ++   V++ +C   
Sbjct: 545 ENGCT---PDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLC--- 598

Query: 322 KVEEAYKFLE 331
           K E+  KF++
Sbjct: 599 KDEKYKKFVD 608


>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 375

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 17/275 (6%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------------GMQTLEEMIQM 228
           +L+D LCK G  + +  + +  + K    +A +Y+ +             +  L  M++ 
Sbjct: 99  ILVDGLCKNGYANKSLHVLEIAEGKGGVLDAFSYSAMINGLCKEAKLDEAVSVLSGMVKN 158

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+   YN  I+ F  A    +A  +F  M T      SP   TY  +I  L + +R 
Sbjct: 159 GCKPNTHVYNALINGFVGASKFEDATRVFREMGTH----CSPNIVTYNTLINGLCKGERF 214

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E + L+  M+  G  P VSTY  +++G+CL  K++ A     ++  KG+ PD+  +N  
Sbjct: 215 GEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKLDMAINLWNQVIAKGFKPDVQMHNIL 274

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC       AL LY  M    C P++ TYN L+  +++ G+   A   W  + + G 
Sbjct: 275 IHGLCSVGKTQLALSLYFNMNXWNCAPNLVTYNTLMEGFYKDGDLRNALAIWAHILRNGL 334

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
             D+ +Y + + GL  C+++  A   L + V K L
Sbjct: 335 QPDIISYNITLKGLCSCNRISGAILFLHDAVTKKL 369



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 154/367 (41%), Gaps = 52/367 (14%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL 222
           + Y E  + K  P+    N +L+   + G +     + + +  K   N  ++NI+ M+ L
Sbjct: 11  RVYNEMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSRNVASFNIM-MRGL 69

Query: 223 -------------EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                        E MI+ G   D+ TY   +D  CK     ++  + E    KG  +  
Sbjct: 70  FDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGVLD- 128

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC-------------------------- 303
             A +Y+ MI  L +  +++E  S+L  M+ +GC                          
Sbjct: 129 --AFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRV 186

Query: 304 --------LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
                    P++ TY  ++ G+C   +  EAY  ++EM  KG+ P + TY+  +K LC  
Sbjct: 187 FREMGTHCSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLG 246

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              D A+ L+ ++I  G  P VQ +N+LI     +G+   A   +  M+   CA ++ TY
Sbjct: 247 HKLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNCAPNLVTY 306

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIHKLSDHMR 474
             +++G +    +  A  +   ++  GL+     ++  L  L     + GAI  L D + 
Sbjct: 307 NTLMEGFYKDGDLRNALAIWAHILRNGLQPDIISYNITLKGLCSCNRISGAILFLHDAVT 366

Query: 475 KFYNPVI 481
           K   P I
Sbjct: 367 KKLVPTI 373



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 12/260 (4%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM +   +PD   YN  ++ + +   +    +L+E M  KGS        ++ IM+  L 
Sbjct: 15  EMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSR----NVASFNIMMRGLF 70

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            N  +++  S+   MI +G   D  TY  +++G+C  G   ++   LE    KG   D  
Sbjct: 71  DNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGVLDAF 130

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           +Y+  +  LC     DEA+ +   M++ GC P+   YN LI+ +    + + A   + EM
Sbjct: 131 SYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRVFREM 190

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
               C+ ++ TY  +I+GL    +  EA  L++E++ KG K P     S LM+   +G  
Sbjct: 191 GTH-CSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWK-PGVSTYSLLMKGLCLG-- 246

Query: 464 GAIHKLSDHMRKFYNPVIAR 483
              HKL D     +N VIA+
Sbjct: 247 ---HKL-DMAINLWNQVIAK 262



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 118/310 (38%), Gaps = 48/310 (15%)

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLV---------------CSMLDYMKRNNKVF 152
           ++ +  + + Y +++D L    Y  K   ++                +M++ + +  K+ 
Sbjct: 87  ENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGVLDAFSYSAMINGLCKEAKLD 146

Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNAN 212
             V VL       +  +K   +P  +  N L++        + A  + + +     PN  
Sbjct: 147 EAVSVL-------SGMVKNGCKPNTHVYNALINGFVGASKFEDATRVFREMGTHCSPNIV 199

Query: 213 TYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                                  TYNT I+  CK     EA DL + M  KG     P  
Sbjct: 200 -----------------------TYNTLINGLCKGERFGEAYDLVKEMLEKG---WKPGV 233

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
            TY++++  L    +++   +L   +I  G  PDV  +  ++ G+C  GK + A      
Sbjct: 234 STYSLLMKGLCLGHKLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFN 293

Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
           M      P++VTYN  ++    + +   AL ++  ++  G  P + +YN+ +        
Sbjct: 294 MNXWNCAPNLVTYNTLMEGFYKDGDLRNALAIWAHILRNGLQPDIISYNITLKGLCSCNR 353

Query: 393 PDGAFETWHE 402
             GA    H+
Sbjct: 354 ISGAILFLHD 363



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 16/184 (8%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P I   N L++ LCK      A  + K +  K  KP  +TY++L             + 
Sbjct: 195 SPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKLDMAIN 254

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              ++I  G  PD   +N  I   C       A  L+  M        +P   TY  ++ 
Sbjct: 255 LWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNC---APNLVTYNTLME 311

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              ++  +    ++  H++ +G  PD+ +Y   L+G+C   ++  A  FL +   K   P
Sbjct: 312 GFYKDGDLRNALAIWAHILRNGLQPDIISYNITLKGLCSCNRISGAILFLHDAVTKKLVP 371

Query: 341 DIVT 344
            I+T
Sbjct: 372 TIIT 375



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  M E    P    YN +++ YF +G     FE W  M ++G +++V
Sbjct: 1   CESGDXDGAERVYNEMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKG-SRNV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ +M+ GLFD  +V++   + E ++  G 
Sbjct: 60  ASFNIMMRGLFDNGEVDQVISIWELMIENGF 90



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV---LCDNKNGDEALRLYGRMIEVGCW 374
           C +G  + A +   EM      PD V YN  L     +   KN  E   L GR       
Sbjct: 1   CESGDXDGAERVYNEMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGS---- 56

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
            +V ++N+++   F+ GE D     W  M + G  +D  TY +++DGL       ++  +
Sbjct: 57  RNVASFNIMMRGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHV 116

Query: 435 LEEVVNKG 442
           LE    KG
Sbjct: 117 LEIAEGKG 124


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 145/344 (42%), Gaps = 52/344 (15%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM 228
           N L+  LCK G++  AE+  KR+     PN  +YNI+             +  L EM ++
Sbjct: 68  NNLISCLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEEL 127

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           GH P    Y++ + +FCK   V++A D+F  M  KG     P    + +++  L +  ++
Sbjct: 128 GHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGC---EPDIVNFNVLLSGLWRARKI 184

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
            E   L   M + GC PDV TY  ++ G+C   K++EA   LE M  +   P  VTY   
Sbjct: 185 HEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTL 244

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGC----------------------------------- 373
           +  LC      +A  ++ +M E  C                                   
Sbjct: 245 IDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGR 304

Query: 374 --WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
              P+V TYN L+       +   A E  + M  +  A ++ TY ++I  L    +VEEA
Sbjct: 305 GISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEA 364

Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
             LL  + +KG     + ++  L +L+  G L    +L   M +
Sbjct: 365 FKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSR 408



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 14/313 (4%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P+I   N+LL  L +   +  A  + + + ++  KP+  TYN +             + 
Sbjct: 165 EPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVF 224

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            LE M Q   +P   TY T ID  CK   + +A ++FE M  +G    +  A +  I+I 
Sbjct: 225 LLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM-AEGPCPCTEPAYSVLILIN 283

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  R  E   +   M   G  P V TY  +LEG+    K+++A +    M ++   P
Sbjct: 284 GLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAP 343

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY   +  LC     +EA +L   M + G  PS++ + +L+S     G  D AFE +
Sbjct: 344 NMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELY 403

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM +  C Q V +  +++DG+     V+EA   L+++ + G+      +D  ++ L   
Sbjct: 404 KEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQ 463

Query: 461 GDLGAIHKLSDHM 473
           G      KL + +
Sbjct: 464 GKADQARKLVEEL 476



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 170/409 (41%), Gaps = 50/409 (12%)

Query: 55  YEAIIDNSNAYDNMEKAL------DSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
           Y  IID      N+EKAL      + LG P T  +   ++Q F     ++    ++A   
Sbjct: 101 YNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFA-EM 159

Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
                EP   N   ++L S  ++A++      +   M                       
Sbjct: 160 PAKGCEPDIVNF--NVLLSGLWRARKIHEARELFRSMNSRG------------------- 198

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------G 218
                +P++   N ++  LCK   +D A  + +R+K + V P   TY  L          
Sbjct: 199 ----CKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARL 254

Query: 219 MQTLEEMIQMGHAP-----DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
            Q  E   +M   P       ++    I+  CKAR   EA ++F+ MR +G    SPT  
Sbjct: 255 QQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGI---SPTVV 311

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY  ++  L+   ++++   L   M++    P++ TY+ ++  +C   +VEEA+K L  M
Sbjct: 312 TYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAM 371

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
            +KG+ P +  +   L  L      D+A  LY  M  + C   V + N+L+      G  
Sbjct: 372 RDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSV 431

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           D A +   +M   G   D  TY  ++ GL    K ++A  L+EE+V  G
Sbjct: 432 DEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 480



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 116/252 (46%), Gaps = 4/252 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +EEM   G +PD  ++   I  F K+          + M   G     P A  Y  +I  
Sbjct: 17  VEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLF---PNAILYNNLISC 73

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   + E  S L  M    C P+V +Y  +++G C A  +E+A  FL EM   G+PP 
Sbjct: 74  LCKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPT 132

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
              Y+  ++  C   N  +A+ ++  M   GC P +  +N+L+S  +   +   A E + 
Sbjct: 133 PHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFR 192

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M+ RGC  DV TY  MI GL    K++EA FLLE +  + +   +  + + +  L    
Sbjct: 193 SMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFA 252

Query: 462 DLGAIHKLSDHM 473
            L   +++ + M
Sbjct: 253 RLQQAYEVFEKM 264



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 36/201 (17%)

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  LV+ D + +  +++  M  +G  PDV ++  ++ G   +G  +     L+ M   G 
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF---------- 388
            P+ + YN  +  LC      EA     RM +  C P+V +YN++I  Y           
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 389 ------ELGEP-------------------DGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
                 ELG P                     A + + EM  +GC  D+  + V++ GL+
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 179

Query: 424 DCSKVEEACFLLEEVVNKGLK 444
              K+ EA  L   + ++G K
Sbjct: 180 RARKIHEARELFRSMNSRGCK 200


>gi|449491189|ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Cucumis sativus]
          Length = 450

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 179/380 (47%), Gaps = 38/380 (10%)

Query: 96  KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
           K ++ FF W   +  + H    YN M+DIL     K  +F L   +++ M+++       
Sbjct: 62  KRSYEFFNWVESECKFDHTTETYNRMLDILG----KFFEFDLSWVLINRMRQSPSASPDH 117

Query: 156 DVLLMILKQYT------------EKIK-VKTQPEINALNLLLDALCKCGLVDYAETICKR 202
               ++ K+Y             E+++  K + E +  NL+ DALC+   VD A+ +C  
Sbjct: 118 ATFRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCNLI-DALCESRHVDEAQELCFG 176

Query: 203 VKNKVKPNANT--YNILGMQTL------------EEMIQMGHAPDNFTYNTAIDTFCKAR 248
              K+  +++T  +N++    L            EEM + G   D  +Y+  +D  CK+ 
Sbjct: 177 KNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSG 236

Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
              +A  L++ M+ KG  +       Y  +I A+  ++ ++    +   M   GC P+V 
Sbjct: 237 KPWKAVKLYKEMKKKGMKLD---VVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVV 293

Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           T   V++  C  G+ ++A+  L++M  +   P+++TY+CF + L   +   E L L+ RM
Sbjct: 294 TCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSL---EKPKEILVLFDRM 350

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           I+ G  P + TY ML+  +   G     F  W++M++ GC+ +   Y  +ID L +   +
Sbjct: 351 IKYGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMI 410

Query: 429 EEACFLLEEVVNKGLKLPYR 448
           + A    EE+V KGL    R
Sbjct: 411 DMARKYDEEMVAKGLSPKLR 430



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 21/297 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNILGMQ-TLEEMIQMGHAP----- 232
           N +LD L K    D +  +  R++      P+  T+ IL  +  L  ++    A      
Sbjct: 85  NRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLR 144

Query: 233 -----DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
                D  ++   ID  C++R V EA +L  F + +     S T K + +++   ++   
Sbjct: 145 EFKLRDETSFCNLIDALCESRHVDEAQELC-FGKNRKLDCDSST-KIHNLILRGWLKMGW 202

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             +C      M   G   D+ +Y   ++  C +GK  +A K  +EM  KG   D+V YN 
Sbjct: 203 WSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNT 262

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  +  ++  D A R++  M E+GC P+V T N +I ++ E G    A     +M KR 
Sbjct: 263 VIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRD 322

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
           C  +V TY      L    K +E   L + ++  G+   + K D+Y+M L   G  G
Sbjct: 323 CQPNVITYHCFFRSL---EKPKEILVLFDRMIKYGV---HPKMDTYVMLLRKFGRWG 373


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 129/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------QTLEEMIQMG 229
           L+  LCK G    A  + +RV  K V+ NA  YN  I GM              EM+  G
Sbjct: 166 LIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKG 225

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +P+  TY+  I  F     + +A DLF  +  +      P   T+ I++    ++ +M+
Sbjct: 226 ISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENI---KPDGYTFNILVDGFCKDRKMK 282

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  ++   M+  G +PDV TY  +++G CL  +V  A      M   G  PDI +YN  +
Sbjct: 283 EGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILI 342

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  D+A+ L+  M      P+V TYN LI    + G    A +   +M  RG  
Sbjct: 343 NGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVP 402

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            ++ TY  +ID LF   +V++A  L+ +  ++G++
Sbjct: 403 PNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQ 437



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 140/312 (44%), Gaps = 36/312 (11%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E +     P +   + L+      G L D  +   K +   +KP+  T+NIL      
Sbjct: 218 YSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCK 277

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                 G      M++ G  PD  TYN+ +D +C  + V  A  +F  M   G    +P 
Sbjct: 278 DRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGV---NPD 334

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y I+I    +  ++++  +L   M     +P+V TY  +++G+  +G++  A + ++
Sbjct: 335 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 394

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS--------------- 376
           +M ++G PP+I+TYN  +  L      D+A+ L  +  + G  PS               
Sbjct: 395 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVE 454

Query: 377 -----VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                V TYN++I  + + G  D A     +M    C  +  TY + I  L D ++ ++A
Sbjct: 455 GYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKA 514

Query: 432 CFLLEEVVNKGL 443
             L  E++ +GL
Sbjct: 515 EKLFREMITRGL 526



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 176 EINAL--NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
           ++NA+  N ++  +CK   V+ A +   + V   + PN  TY+ L             + 
Sbjct: 192 QLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAID 251

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              ++I     PD +T+N  +D FCK R + E   +F  M  +G     P   TY  ++ 
Sbjct: 252 LFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGII---PDVVTYNSLMD 308

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  +    S+   M   G  PD+ +Y  ++ G C   KV++A     EM  K   P
Sbjct: 309 GYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIP 368

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++VTYN  +  L  +     AL+L  +M + G  P++ TYN +I   F+  + D A    
Sbjct: 369 NVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALI 428

Query: 401 HEMDKRGCAQDVDTYCVMIDGL 422
            +   +G    + TY ++IDGL
Sbjct: 429 TKFKDQGIQPSMYTYTILIDGL 450



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 117/252 (46%), Gaps = 3/252 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           ++++ +G   D  +Y T I   CK      A DL +  R  G  +    A  Y  +I  +
Sbjct: 149 DKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQ--RVDGKLVQL-NAVMYNTVIYGM 205

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            ++  + + F L   M++ G  P+V TY  ++ G  + GK+++A     ++  +   PD 
Sbjct: 206 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDG 265

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
            T+N  +   C ++   E   ++  M++ G  P V TYN L+  Y  + E + A   ++ 
Sbjct: 266 YTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNT 325

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M + G   D+ +Y ++I+G     KV++A  L  E+  K +      ++S +  LS  G 
Sbjct: 326 MAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGR 385

Query: 463 LGAIHKLSDHMR 474
           +    +L D M 
Sbjct: 386 ISYALQLVDQMH 397



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 7/226 (3%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
              +++    P  F +N  + +  K++       L + M  +G     P      I+I  
Sbjct: 74  FNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGI---KPNLFNCNILIYC 130

Query: 282 LVQND----RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
             Q      ++ + F     ++  G   D  +Y  ++ G+C  G+   A   L+ +  K 
Sbjct: 131 FCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKL 190

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
              + V YN  +  +C +K+ ++A  LY  M+  G  P+V TY+ LIS +F +G+   A 
Sbjct: 191 VQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAI 250

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + ++++       D  T+ +++DG     K++E   +   ++ +G+
Sbjct: 251 DLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGI 296



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 30/204 (14%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
            P+I + N+L++  CK   VD A  +   +  K + PN  TYN L             +Q
Sbjct: 332 NPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQ 391

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
            +++M   G  P+  TYN+ ID   K   V +A  L    + +G   S            
Sbjct: 392 LVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLC 451

Query: 269 -----SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
                  T  TY +MI    +    +E  SLL  M +S C+P+  TY+  +  +    + 
Sbjct: 452 KVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNEN 511

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNC 347
           ++A K   EM  +G      +Y C
Sbjct: 512 DKAEKLFREMITRGLLNRSASYPC 535



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 89/214 (41%), Gaps = 16/214 (7%)

Query: 257 FEFMRTKGSTIS-SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           F  + TK + IS S T+ T+         N+ +++  SL   ++     P    + ++L 
Sbjct: 42  FLILLTKINFISYSSTSTTFH-------SNNDVDDAVSLFNRLLRQNPTPPAFEFNKILG 94

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG------DEALRLYGRMI 369
            +  +          ++M  +G  P++  +NC + + C  + G       +A   + +++
Sbjct: 95  SLVKSKHYHTVLSLSQKMEFRGIKPNL--FNCNILIYCFCQLGLIPCQIHQAFLFHDKLV 152

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
            +G      +Y  LI    ++GE   A +    +D +    +   Y  +I G+     V 
Sbjct: 153 ALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVN 212

Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           +A  L  E+V+KG+      + + +    V+G L
Sbjct: 213 DAFDLYSEMVSKGISPNVVTYSALISGFFVVGKL 246


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 176/405 (43%), Gaps = 39/405 (9%)

Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN------------KVFVPVDV 157
           N    PL +    D+L  T  +A++ R  C     +K                  V V  
Sbjct: 22  NCGSNPLVF----DLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGW 77

Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI 216
           + +  + Y E ++   Q  +  LN++++ALCK   ++  ++    ++ K V P+  TYN 
Sbjct: 78  VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 137

Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
           L              + ++ M   G  P  FTYN  I+  CK      A  + + M   G
Sbjct: 138 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 197

Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
               SP   TY I++V   +ND M +   +   M + G +PD+ ++  ++  +   G ++
Sbjct: 198 ---MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254

Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           +A K+  +M N G  PD V Y   +   C N    EAL++   M+E GC   V TYN ++
Sbjct: 255 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 314

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           +   +      A E + EM +RG   D  T+  +I+G      + +A  L E ++ + LK
Sbjct: 315 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 374

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489
                +++ +       ++  +++L       +N +I+RR+  N 
Sbjct: 375 PDVVTYNTLIDGFCKGSEMEKVNEL-------WNDMISRRIYPNH 412



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 45/315 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   N L++A C+ GL++ A  +   +  K +KP   TYN +                
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------- 268
           L+EM+++G +PD  TYN  +   C+   + +A  +F+ M ++G                 
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 249

Query: 269 -------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
                              +P    Y I+I    +N  M E   +   M+  GC+ DV T
Sbjct: 250 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 309

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
           Y  +L G+C    + EA +   EM  +G  PD  T+   +     + N ++A+ L+  MI
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 369

Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           +    P V TYN LI  + +  E +   E W++M  R    +  +Y ++I+G  +   V 
Sbjct: 370 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 429

Query: 430 EACFLLEEVVNKGLK 444
           EA  L +E+V KG +
Sbjct: 430 EAFRLWDEMVEKGFE 444



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 51/347 (14%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++ + + L+  L K G +D A    + +KN  + P+   Y IL             ++ 
Sbjct: 235 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 294

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM++ G   D  TYNT ++  CK +M++EA +LF  M  +G     P   T+  +I  
Sbjct: 295 RDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF---PDFYTFTTLING 351

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA--------------------- 320
             ++  M +  +L   MI     PDV TY  +++G C                       
Sbjct: 352 YSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 411

Query: 321 --------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
                         G V EA++  +EM  KG+   I+T N  +K  C   N  +A     
Sbjct: 412 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 471

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M+  G  P   TYN LI+ + +    D AF   ++M+  G   DV TY V+++G     
Sbjct: 472 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 531

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           +++EA  ++ +++ +G+      + S +       +L    ++ D M
Sbjct: 532 RMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 578



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 128/283 (45%), Gaps = 17/283 (6%)

Query: 181 NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N +L+ LCK  ++  A E   +  +  V P+  T+  L             +   E MIQ
Sbjct: 311 NTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQ 370

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               PD  TYNT ID FCK   + +  +L+  M ++      P   +Y I+I        
Sbjct: 371 RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY---PNHISYGILINGYCNMGC 427

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           + E F L   M+  G    + T   +++G C AG   +A +FL  M  KG  PD +TYN 
Sbjct: 428 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 487

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +      +N D A  L  +M   G  P V TYN++++ +   G    A     +M +RG
Sbjct: 488 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 547

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
              D  TY  +I+G    + ++EA  + +E++ +G  +P  KF
Sbjct: 548 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF-VPDDKF 589


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 174/395 (44%), Gaps = 48/395 (12%)

Query: 69  EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSST 128
           ++ L S    L+  +V   L+  +   K AF FF W  H+  ++H P  Y +M++IL   
Sbjct: 73  DELLSSFTTSLSKTTVFQTLRHIKVPTK-AFLFFNWI-HEKGFSHNPQTYFIMLEILG-- 128

Query: 129 KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
                             R   + +  + L  I K+   ++K+    E    N L+ +  
Sbjct: 129 ------------------REKNLNIARNFLYSIEKRSNGEVKL----EDRFFNSLIRSYG 166

Query: 189 KCGLVDYAETICKRVK-NKVKPNANTYNI------------LGMQTLEEMIQM-GHAPDN 234
           + GL   +  + + +K   V P   T+N             +  +  +EM++  G  PD 
Sbjct: 167 EAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDT 226

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           +TYN  I  FCK  MV E    F F +   S    P   TY  ++  L +  +++   +L
Sbjct: 227 YTYNILIRGFCKNSMVDEG---FYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNL 283

Query: 295 LGHMINSGC---LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           +  M +  C    PDV TY  ++ G C   +V+EA   LEEM  +G  P+IVTYN  +K 
Sbjct: 284 VNGM-SKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKG 342

Query: 352 LCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
           LC+ +  D+   +  +M  + G  P   T+N LI+ +   G  D AF+ +  M K   + 
Sbjct: 343 LCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSA 402

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           D  +Y V+I  L       +A  L +E+  K + L
Sbjct: 403 DSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILL 437



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 7/244 (2%)

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           +N+ I ++ +A +  E+  LFE M+  G    SP   T+  +++ L++  R      +  
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGV---SPGVVTFNSVLLVLLKRGRTNMAKEVYD 214

Query: 297 HMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
            M+ + G  PD  TY  ++ G C    V+E + F +EM +    PD+VTYN  +  LC  
Sbjct: 215 EMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRA 274

Query: 356 KNGDEALRLYGRMIEV--GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
                A  L   M +      P V TY  LI  Y    E D A +   EM+ RG   ++ 
Sbjct: 275 GKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIV 334

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR-KFDSYLMQLSVIGDLGAIHKLSDH 472
           TY  +I GL +  K ++   +LE++   G  +P    F++ +      G+L    K+ ++
Sbjct: 335 TYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFEN 394

Query: 473 MRKF 476
           M+K 
Sbjct: 395 MKKL 398



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 30/327 (9%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNIL---- 217
           + E       P++   N L+D LC+ G +  A  +   +  K K   P+  TY  L    
Sbjct: 249 FKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGY 308

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                    +  LEEM   G  P+  TYNT I   C+A+   +  ++ E M+  G +I  
Sbjct: 309 CRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSI-- 366

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P A T+  +I +      ++E F +  +M       D ++Y  ++  +C  G   +A   
Sbjct: 367 PDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEML 426

Query: 330 LEEMGNK-------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            +E+  K       G  P   +Y C  + LC+N    +A R+  ++++ G    + +Y +
Sbjct: 427 FDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPL-SYQI 485

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           +I  + + G  +  +     M +R    D+D Y  +IDG     K      L +E + K 
Sbjct: 486 VILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKP----LLAKETLEKM 541

Query: 443 LKLPYR-KFDSYLMQLSVIGDLGAIHK 468
           LK  Y+ +  ++   L+ + + G +H+
Sbjct: 542 LKSSYKPQTSTWHSILNRLLEQGCVHE 568



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 150/390 (38%), Gaps = 81/390 (20%)

Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP-VDVLLMILKQYTEKIKVKT- 173
           + YN ++D L     +A + ++  ++++ M +  K   P V     +++ Y  K +V   
Sbjct: 262 VTYNTLVDGLC----RAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEA 317

Query: 174 ------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK--PNANTYNIL-- 217
                       +P I   N L+  LC+    D  + I +++K      P+A T+N L  
Sbjct: 318 LDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLIN 377

Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                       +  E M ++  + D+ +Y+  I T C+     +A  LF+ +  K   +
Sbjct: 378 SHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILL 437

Query: 268 SS----PTAKTYAIMIVALVQNDRM----------------------------------E 289
           SS    P A +Y  M   L +N +                                   E
Sbjct: 438 SSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPLSYQIVILGHCKEGSYE 497

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
             + LL  M+    LPD+  Y  +++G     K   A + LE+M    Y P   T++  L
Sbjct: 498 NGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSIL 557

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             L +     E+  +   M+E     ++      + + F+ G  D AF+    + K G  
Sbjct: 558 NRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNG-- 615

Query: 410 QDVDTYCVMIDGL--FDCSKVE--EACFLL 435
                +CV +D +  F C+K    EAC LL
Sbjct: 616 -----FCVKMDEVVQFLCNKRRALEACKLL 640


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 146/343 (42%), Gaps = 47/343 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P +  LN LL AL +  +    E++  R+  +   N  TY  L              Q L
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPAR---NLRTYTTLINAYCLAGDIPAAKQHL 95

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------------------ 264
             ++  G APD++ Y + +  +C+A M+T A  +F  M  +G                  
Sbjct: 96  TSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGA 155

Query: 265 --------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                         +   +P    YA M+  L +  R EE   LL   +++G  P++  Y
Sbjct: 156 GMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G C AG++E A K  E M      P++ TY   +  LC +   + A+ L+ RM+E
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI      G    AF   H M+  G   +  T+ V+ID L    KVEE
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           A   L  +V KG+K+    + S +  L   G + A  +L   M
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKM 378



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 19/302 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------G 218
           +  P +     L+  LCK G V+ A  +  R V+  ++PN  TY  L             
Sbjct: 242 RCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA 301

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + L  M   G  P+++T++  ID  CK   V EA      +  KG  ++      Y  +
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE---VVYTSL 358

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  +++    L+  MI+ G +PD  +Y  +++G+C   K+ +A   LE+M  KG 
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
               VTY   +  L      +   +++ +MI  G  P + TY + +  Y E G  + A  
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              +M  RG   ++ TY  +I G  +   V +A    E +V KG K      DSY + L 
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWK---PNEDSYTVLLR 535

Query: 459 VI 460
           ++
Sbjct: 536 LV 537



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+   YN  ID +C A  +  A  +FE M        SP  +TY  +I  L ++ ++
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGM---DGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L   M+ +G  P+V TY  +++G C  G ++ A++ L  M   G  P+  T++  
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC  +  +EA    G +++ G   +   Y  LI    + G+ D A E   +M   G 
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             D  +Y  +IDGL    K+ +A  +LE+++ KG++
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ 419



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 136/284 (47%), Gaps = 18/284 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P I   N L+D  C  G +++A  + + +  N+  PN  TY  L             M 
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M++ G  P+  TY   I   C    +  A  L   M T G     P   T++++I 
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV---PNDWTFSVLID 325

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL + +++EE    LG ++  G   +   Y  +++G+C  GK++ A + +++M ++G+ P
Sbjct: 326 ALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVP 385

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-SMYFELGEPDGAFET 399
           D  +Y+  +  LC  K   +A  +   M+E G   S  TY ++I  +  E+G  +G  + 
Sbjct: 386 DAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGS-EGPKKI 444

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +M   G   D+ TY V +    +  ++E+A  ++ ++V++G+
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 129/282 (45%), Gaps = 28/282 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--GM----------QT 221
           P     ++L+DALCK   V+ A+  +   VK  VK N   Y  L  G+          + 
Sbjct: 315 PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADEL 374

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++MI  G  PD  +Y++ ID  C+ + +++A  + E M  KG   +SP   TY I+I  
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ-ASPV--TYTIIIDE 431

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+    E    +   MI +G  PD+ TY   +   C  G++E+A   + +M ++G  P+
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW- 400
           +VTYN  ++   +     +A   +  M+  G  P+  +Y +L+ +  +    D + + W 
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551

Query: 401 -----------HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                       ++ +R      D Y   I  L    ++EEA
Sbjct: 552 IADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEA 593



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 22/229 (9%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL---- 217
           K + + I     P+I    + + + C+ G ++ AE+ I + V   V PN  TYN L    
Sbjct: 443 KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI-- 267
                      T E M+  G  P+  +Y   +    K      + D+++    K   +  
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLL 562

Query: 268 ------SSP-TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
                   P  A  Y+  I  L + DR+EE       M N+   P    Y  +++  C  
Sbjct: 563 EDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRL 622

Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
             + +A   L+ M   GY P + +Y   +  LC+  N   A  ++G ++
Sbjct: 623 KILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLL 671


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 146/333 (43%), Gaps = 51/333 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN------------ILGMQT 221
           P++ +   ++D  C  G +     + K ++ K +KPN  TY+            + G + 
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCK----------------------------------- 246
           L EM++ G  PD+  Y T ID FCK                                   
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSG 262

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           +  V EA  LF  M  KG     P   TY  +I    +   M++ F L   M+  G  P+
Sbjct: 263 SGKVVEADKLFNEMIKKGF---EPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPN 319

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
           V TY  + +G+C +G+++ A + L EM  KG   +I TYN  +  LC   N  +A++L  
Sbjct: 320 VVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLME 379

Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
            M E G  P   TY  L+  Y++ GE   A E   EM  RG    V T+ V+++GL    
Sbjct: 380 EMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSG 439

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
           K+E+   LL+ ++ KG+      ++S + Q  +
Sbjct: 440 KLEDGERLLKWMLEKGIMPNAATYNSIMKQYCI 472



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 25/320 (7%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
           D+L M+LK ++E  ++       + N+L+++L + G +  A  +  R++ K         
Sbjct: 89  DMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFK--------- 139

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
                        G  PD  +Y T ID +C    + +   L + M+ KG     P   TY
Sbjct: 140 -------------GCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGL---KPNLYTY 183

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
           + +I+ L ++ ++ E   +L  M+  G  PD   Y  +++G C  G  + AYK   EM  
Sbjct: 184 SSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEA 243

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
           +   PD + ++  +  L  +    EA +L+  MI+ G  P   TY  LI  Y +LGE   
Sbjct: 244 REIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKK 303

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
           AF   ++M + G   +V TY  + DGL    +++ A  LL E+  KGL+L    +++ + 
Sbjct: 304 AFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVN 363

Query: 456 QLSVIGDLGAIHKLSDHMRK 475
            L   G++    KL + M++
Sbjct: 364 GLCKAGNILQAVKLMEEMKE 383



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 133/294 (45%), Gaps = 16/294 (5%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILG--- 218
           K + E IK   +P+      L+D  CK G +  A  +  + V+  + PN  TY  L    
Sbjct: 271 KLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGL 330

Query: 219 ---------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
                     + L EM + G   +  TYNT ++  CKA  + +A  L E M+  G     
Sbjct: 331 CKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL---H 387

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   TY  ++ A  +   M +   LL  M++ G  P V T+  ++ G+C++GK+E+  + 
Sbjct: 388 PDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERL 447

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L+ M  KG  P+  TYN  +K  C   N   +  +Y  M   G  P   TYN+LI  + +
Sbjct: 448 LKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCK 507

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
                 A+    EM ++       +Y  +I G F   K+ EA  L EE+  +GL
Sbjct: 508 ARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGL 561



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 16/292 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------ 217
           + + +++   P +     L D LCK G +D A E + +  +  ++ N +TYN +      
Sbjct: 308 HNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCK 367

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++ +EEM + G  PD  TY T +D + K   + +A +L   M  +G     PT
Sbjct: 368 AGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGL---QPT 424

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             T+ +++  L  + ++E+   LL  M+  G +P+ +TY  +++  C+   +  + +   
Sbjct: 425 VVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYR 484

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  +G  PD  TYN  +K  C  +N  EA  L+  M+E     +  +YN LI  +F+  
Sbjct: 485 GMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRK 544

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   A + + EM + G     + Y + +D  ++   +E    L +E + K L
Sbjct: 545 KLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEKCL 596


>gi|255660998|gb|ACU25668.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 376

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L +MI+ G  P+   YNT I+    A    +A  +F   R  G+   SPT  TY  +
Sbjct: 149 VSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF---REMGTVRCSPTIITYNTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +N+   E + L+  M+  G  P V TY  +++G+CL  KVE A +   ++ +KG+
Sbjct: 206 INGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ T+N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVGKTQLALSLYJDMNRWKCAPNLVTHNTLMEGFYKDGDIRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            W  + + G   D+ +Y + + GL  C+++ +A   L + V K
Sbjct: 326 IWARVLRNGLEPDIISYNITLKGLCSCNRICDAILFLHDAVRK 368



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 17/317 (5%)

Query: 177 INALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLE 223
           +++ N+++  L   G VD   +I + +K +    ++ TY IL             +  LE
Sbjct: 59  VSSFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGYINKSLHVLE 118

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
              Q G   D F Y+  I+  CK   + +A  +   M   G     P A  Y  +I  LV
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGC---KPNAHVYNTLINGLV 175

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
              + E+   +   M    C P + TY  ++ G+C      EAY  ++EM  KG  P ++
Sbjct: 176 GASKFEDAIRVFREMGTVRCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVI 235

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY+  +K LC +   + AL+L+ ++I  G  P VQ +N+LI     +G+   A   + +M
Sbjct: 236 TYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYJDM 295

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
           ++  CA ++ T+  +++G +    +  A  +   V+  GL+     ++  L  L     +
Sbjct: 296 NRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNGLEPDIISYNITLKGLCSCNRI 355

Query: 464 -GAIHKLSDHMRKFYNP 479
             AI  L D +RK   P
Sbjct: 356 CDAILFLHDAVRKKIVP 372



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 4/224 (1%)

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +  +E+++   +PD   YN  ++ + +   + +  +L+E M  +G+     +  ++ IM+
Sbjct: 11  RVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGNEGNR----SVSSFNIMM 66

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
             L    +++E  S+   M  S  + D  TY  ++ G C  G + ++   LE    KG  
Sbjct: 67  RGLFDKGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGYINKSLHVLEMAEQKGGV 126

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
            D   Y+  +  LC   N D+A+ +   MI+ GC P+   YN LI+      + + A   
Sbjct: 127 LDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRV 186

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + EM    C+  + TY  +I+GL       EA  L++E++ KGL
Sbjct: 187 FREMGTVRCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGL 230



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 18/197 (9%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++ + E   V+  P I   N L++ LCK  +   A  + K +  K + P+  TY++L   
Sbjct: 184 IRVFREMGTVRCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKG 243

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF-EFMRTKGSTI 267
                     +Q   ++I  G  PD   +N  I   C       A  L+ +  R K    
Sbjct: 244 LCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYJDMNRWK---- 299

Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327
            +P   T+  ++    ++  +     +   ++ +G  PD+ +Y   L+G+C   ++ +A 
Sbjct: 300 CAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNGLEPDIISYNITLKGLCSCNRICDAI 359

Query: 328 KFLEEMGNKGYPPDIVT 344
            FL +   K   P  +T
Sbjct: 360 LFLHDAVRKKIVPTKIT 376



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  ++E    P    YN +++ YF + +    FE W  M   G  + V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGNEG-NRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLE 436
            ++ +M+ GLFD  KV+E   + E
Sbjct: 60  SSFNIMMRGLFDKGKVDEVISIWE 83



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 2/163 (1%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C +G ++ A +  +E+      PD V YN  L          +   L+  M   G   SV
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGNEGN-RSV 59

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            ++N+++   F+ G+ D     W  M K    +D  TY +++ G      + ++  +LE 
Sbjct: 60  SSFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGYINKSLHVLEM 119

Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNP 479
              KG  L    + + +  L    +L  A+  L+D ++    P
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKP 162


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 127/286 (44%), Gaps = 28/286 (9%)

Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGM 219
           M+ K Y + ++V   P I+  N+L+ A CK G V+ AE                      
Sbjct: 205 MVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAE---------------------- 242

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           Q L EM      PD FTYNT I  +CK  M  EA  + + M   G    SP   TY  +I
Sbjct: 243 QLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGV---SPDIVTYNSLI 299

Query: 280 VALVQ--NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
               +  ND +EE   L   M   G  P V TY  +L  +C  GK+++A + L EM  + 
Sbjct: 300 YGFCREVND-LEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERK 358

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
             PD VT N  +   C   +   A+++  +M+E G  P   T+  LI  + +L E D A 
Sbjct: 359 VEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAK 418

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           E   EM   G +    TY  ++D  +D    E    L +E+  KGL
Sbjct: 419 EFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGL 464



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 17/251 (6%)

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI--------------VALVQ 284
           T I T  K +    A +L E +  +   +SSP+     + I              V    
Sbjct: 105 TMIHTLAKHKQFKTAQNLLERIAVR-DYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYA 163

Query: 285 NDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           N RM ++   +  HM   G  P +     +L  +  A      +K  ++M   G  P+I 
Sbjct: 164 NSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIH 223

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
            +N  +   C + + ++A +L   M     +P + TYN LIS+Y + G    A      M
Sbjct: 224 IFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRM 283

Query: 404 DKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           ++ G + D+ TY  +I G   + + +EEA  L E +  +GL      ++S L +L   G 
Sbjct: 284 ERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGK 343

Query: 463 LGAIHKLSDHM 473
           +   ++L + M
Sbjct: 344 IKDANRLLNEM 354


>gi|449436631|ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]
          Length = 1559

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 178/378 (47%), Gaps = 38/378 (10%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
           ++ FF W   +  + H    YN M+DIL     K  +F L   +++ M+++         
Sbjct: 615 SYEFFNWVESECKFDHTTETYNRMLDILG----KFFEFDLSWVLINRMRQSPSASPDHAT 670

Query: 158 LLMILKQYT------------EKIK-VKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
             ++ K+Y             E+++  K + E +  NL+ DALC+   VD A+ +C    
Sbjct: 671 FRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCNLI-DALCESRHVDEAQELCFGKN 729

Query: 205 NKVKPNANT--YNILGMQTL------------EEMIQMGHAPDNFTYNTAIDTFCKARMV 250
            K+  +++T  +N++    L            EEM + G   D  +Y+  +D  CK+   
Sbjct: 730 RKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKP 789

Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
            +A  L++ M+ KG  +       Y  +I A+  ++ ++    +   M   GC P+V T 
Sbjct: 790 WKAVKLYKEMKKKGMKLD---VVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTC 846

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             V++  C  G+ ++A+  L++M  +   P+++TY+CF + L   K   E L L+ RMI+
Sbjct: 847 NTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPK---EILVLFDRMIK 903

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P + TY ML+  +   G     F  W++M++ GC+ +   Y  +ID L +   ++ 
Sbjct: 904 YGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDM 963

Query: 431 ACFLLEEVVNKGLKLPYR 448
           A    EE+V KGL    R
Sbjct: 964 ARKYDEEMVAKGLSPKLR 981



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 21/297 (7%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNILGMQ-TLEEMIQMGHAP----- 232
           N +LD L K    D +  +  R++      P+  T+ IL  +  L  ++    A      
Sbjct: 636 NRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLR 695

Query: 233 -----DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
                D  ++   ID  C++R V EA +L  F + +     S T K + +++   ++   
Sbjct: 696 EFKLRDETSFCNLIDALCESRHVDEAQELC-FGKNRKLDCDSST-KIHNLILRGWLKMGW 753

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             +C      M   G   D+ +Y   ++  C +GK  +A K  +EM  KG   D+V YN 
Sbjct: 754 WSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNT 813

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  +  ++  D A R++  M E+GC P+V T N +I ++ E G    A     +M KR 
Sbjct: 814 VIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRD 873

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
           C  +V TY      L    K +E   L + ++  G+   + K D+Y+M L   G  G
Sbjct: 874 CQPNVITYHCFFRSL---EKPKEILVLFDRMIKYGV---HPKMDTYVMLLRKFGRWG 924


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 16/284 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQT----------- 221
           +P +   N +++ LCK G    A+ I   + N  + P+  TYN L +++           
Sbjct: 185 KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 244

Query: 222 -LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM++ G  PD  ++++ I  F + R + +A   F  M+  G     P    Y +++ 
Sbjct: 245 IFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLV---PDNVIYTVLMH 301

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +N  M E   +   M+  GC+ DV  Y  +L G+C    + +A K  +EM  +G  P
Sbjct: 302 GYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALP 361

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D  T+   +   C + N  +AL L+G M +    P +  YN LI  + ++GE + A E W
Sbjct: 362 DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELW 421

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             M  R    +  TY ++I+       V EA  L + ++ KG+K
Sbjct: 422 DGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 465



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 40/291 (13%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           ++  +EM++ G   D   YNT ++  CK +M+T+A  LF+ M  +G+    P   T+  +
Sbjct: 313 LKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL---PDFYTFTTL 369

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK---------------- 322
           I    Q+  M +  SL G M      PD+  Y  +++G C  G+                
Sbjct: 370 IHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI 429

Query: 323 -------------------VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
                              V EA++  + M  KG  P +VT N  +K  C + +  +A  
Sbjct: 430 FPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADE 489

Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
             GRMI  G  P   +YN LI+ +      D AF   ++M+K G   D+ TY V+++G  
Sbjct: 490 FLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFC 549

Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHM 473
              +++EA  +L +++ KG+  P R   + L+   V  D L    +  D M
Sbjct: 550 RQGRMQEAELVLRKMIEKGIN-PDRSTYTALINGHVTQDNLNEAFRFHDEM 599



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 144/326 (44%), Gaps = 23/326 (7%)

Query: 137 LVCSMLDYMKRNNKVF---VPVDVLLMILKQYTEKIKVKTQP----EINALNLLLDALCK 189
           LV SM      NN VF   +   V    L++ TE  ++         INA N LL  L K
Sbjct: 36  LVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVK 95

Query: 190 CGLVDYAETICKRV-KNKVKPNANTYNILG------------MQTLEEMIQMGHAPDNFT 236
              V+ A  + + V ++ ++ N  T NI+                L EM   G   D  T
Sbjct: 96  IDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVT 155

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
           YNT I  +C+  ++ EA   FE M +       P+  TY  +I  L +  R      +L 
Sbjct: 156 YNTLIGAYCREGLLEEA---FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 212

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            M+N G  PD +TY  +L   C      EA +   EM  +G  PD+V+++  + V   N+
Sbjct: 213 EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNR 272

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
           + D+AL  +  M + G  P    Y +L+  Y   G    A +   EM ++GC  DV  Y 
Sbjct: 273 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 332

Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKG 442
            +++GL     + +A  L +E+V +G
Sbjct: 333 TILNGLCKEKMLTDADKLFDEMVERG 358



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 103/238 (43%), Gaps = 25/238 (10%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
           +P+I A N L+D  CK G ++ A                       +  + MI     P+
Sbjct: 395 KPDIVAYNTLIDGFCKVGEMEKAS----------------------ELWDGMISRKIFPN 432

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           + TY   I+ +C    V+EA  L++ M  KG     PT  T   +I    ++    +   
Sbjct: 433 HITYGILINAYCSVGHVSEAFRLWDVMIEKGI---KPTLVTCNTVIKGYCRSGDSSKADE 489

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
            LG MI  G  PD  +Y  ++ G      +++A+ ++ +M  +G  PDI+TYN  +   C
Sbjct: 490 FLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFC 549

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
                 EA  +  +MIE G  P   TY  LI+ +      + AF    EM +RG A D
Sbjct: 550 RQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 16/294 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQ 227
           N L+  L    L+D AE +   +K     P+  TY+++             ++  EEM  
Sbjct: 73  NALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 132

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G+     TYNT I    K++M+ EA +L+  + ++G    SPT  TY  ++  L+++  
Sbjct: 133 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF---SPTPCTYGPLLDGLLKDGN 189

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E+  +L   M+  GC P+ + Y  +L G  +AG  E+  +  E M  +G  PDI +Y  
Sbjct: 190 IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 249

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +  LC +   ++ L  + ++ ++G  P + TYN+LI    + G  + A   +++M+K+G
Sbjct: 250 VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 309

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            A ++ TY  +I  L    K  EA  + EE++ KG K     +++ +   SV G
Sbjct: 310 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 363



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 16/214 (7%)

Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
           LLD L K G ++ AE +    ++   +PN   YNIL              +  E M++ G
Sbjct: 180 LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 239

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD  +Y   IDT C    + +    F+ +   G     P   TY ++I  L ++ R+E
Sbjct: 240 MNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGL---EPDLITYNLLIHGLGKSGRLE 296

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  SL   M   G  P++ TY  ++  +  AGK  EA K  EE+  KG+ P++ TYN  +
Sbjct: 297 EALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 356

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           +    + + + A   YGRMI  GC P+  TY  L
Sbjct: 357 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 390



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 25/335 (7%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLD---------ALCKCGLVDYAETICKRVKN-KVKPN 210
           ILK+   +  ++    I +  LLLD          LCK      A  + K+ +N  V   
Sbjct: 9   ILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLK 68

Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
             +YN L              +   EM ++G  PD FTY+  +D   K+  + +   + E
Sbjct: 69  TGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQE 128

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
            M  KG      T  TY  +I  LV++  ++E  +L   +++ G  P   TY  +L+G+ 
Sbjct: 129 EMHNKGY---KSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLL 185

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             G +E+A    +EM   G  P+   YN  L       + ++   L+  M+E G  P ++
Sbjct: 186 KDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIK 245

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           +Y ++I      G  +     + ++   G   D+ TY ++I GL    ++EEA  L  ++
Sbjct: 246 SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 305

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             KG+      ++S ++ L   G      K+ + +
Sbjct: 306 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 340



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 9/254 (3%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E +   G   D+   +  I   CK +    A +L +     G ++ +    +Y  +I  L
Sbjct: 23  ENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKT---GSYNALICGL 79

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
           V  D ++    L   M   GC PD  TY  +L+ M  + ++E+  K  EEM NKGY    
Sbjct: 80  VDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTY 139

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           VTYN  +  L  +K  DEA+ LY +++  G  P+  TY  L+    + G  + A   + E
Sbjct: 140 VTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDE 199

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           M + GC  +   Y ++++G       E+ C L E +V +G+    + +        VI  
Sbjct: 200 MLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYT------VVIDT 253

Query: 463 LGAIHKLSDHMRKF 476
           L A  +L+D +  F
Sbjct: 254 LCADGRLNDGLSYF 267



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%)

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++EG+      E++ +F E + + G   D +  +  ++ LC +K    A  L  +   +G
Sbjct: 5   LMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLG 64

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
                 +YN LI    +    D A E + EM + GC  D  TY +++D +    ++E+  
Sbjct: 65  VSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDML 124

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQL 457
            + EE+ NKG K  Y  +++ +  L
Sbjct: 125 KIQEEMHNKGYKSTYVTYNTIISGL 149



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 73/166 (43%)

Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
           ++  +++ D  E+      ++ +SG L D      ++  +C   +   A++ +++  N G
Sbjct: 5   LMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLG 64

Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
                 +YN  +  L D    D A  L+  M  +GC P   TY++++    +    +   
Sbjct: 65  VSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDML 124

Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   EM  +G      TY  +I GL     ++EA  L  +++++G 
Sbjct: 125 KIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGF 170


>gi|259490380|ref|NP_001159198.1| uncharacterized protein LOC100304284 [Zea mays]
 gi|223942589|gb|ACN25378.1| unknown [Zea mays]
 gi|414865313|tpg|DAA43870.1| TPA: hypothetical protein ZEAMMB73_208601 [Zea mays]
          Length = 519

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 212/464 (45%), Gaps = 42/464 (9%)

Query: 43  ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQF---EEKIAF 99
           + + S +DV ++Y  I+ ++     ME AL +  V L++  +  V++RF+F   +   A 
Sbjct: 35  DGTASDADVGEVYR-IVTSAATPSAMESALAASAVSLSSPLLDAVMRRFRFAHGDPLRAL 93

Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
                A  +   A  P A +  + +L     +A++F  + +++   +R     +     +
Sbjct: 94  SLLSLAADRGGIAPSPYAIDTALYVLG----RARRFPHMWNLVANTRRICPDALTPRTAM 149

Query: 160 MILKQYTEKIKVK---------------TQPEINALNLLLDALCKCGLVDYAETICKRVK 204
           ++L +  +   V+                 P +   N LL  LC+   +  A  +   +K
Sbjct: 150 IVLGRVAKVCSVRETVASFRCLARLFHTVDPAV-LFNALLRTLCQEKSMSDARNVFHALK 208

Query: 205 NKVKPNANTYNIL--GMQTLE-------EMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
            + + N +T+NIL  G ++ E       EM ++G  PD  TYN+ ID  CK R V +A  
Sbjct: 209 YEFRVNRHTFNILLSGWKSAEDAEAFVTEMRELGVEPDLVTYNSLIDCHCKNRDVQKAYK 268

Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
           L + MR K     SP   TY  +I  L    + ++   LL  M   GC PDV  Y   + 
Sbjct: 269 LLDEMRHKD---ISPDIITYTSLIGGLGLIGQPDKAKDLLKEMYELGCYPDVPAYNAAIR 325

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
              +A ++ +A+  +++M +KG  P+  TYN F +      +   A RLY RM   GC+P
Sbjct: 326 NFVIAKRLGDAFALMDQMVSKGLMPNPTTYNLFFRCYYWAFDIGSAWRLYERMRSEGCYP 385

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA--CF 433
           + Q+   +I +    G+   A E W +M             V++D L D  K+E+A  CF
Sbjct: 386 NTQSCMFIIRLCHRYGKVALALELWSDMVSSSFGSLTLVSDVLLDLLCDEGKLEDAERCF 445

Query: 434 L-LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
             + E+  K   + +R+    LMQL+   +  +I +L++ M +F
Sbjct: 446 CQMVELGQKPSNVAFRRI-KILMQLAKQEE--SIARLTEKMIQF 486



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 53/261 (20%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------- 217
           TE  ++  +P++   N L+D  CK   V  A  +   +++K + P+  TY  L       
Sbjct: 236 TEMRELGVEPDLVTYNSLIDCHCKNRDVQKAYKLLDEMRHKDISPDIITYTSLIGGLGLI 295

Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
                    L+EM ++G  PD   YN AI  F  A+ + +A  L + M +KG     P  
Sbjct: 296 GQPDKAKDLLKEMYELGCYPDVPAYNAAIRNFVIAKRLGDAFALMDQMVSKGLM---PNP 352

Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST----------YKEVLEGM----- 317
            TY +          +   + L   M + GC P+  +          Y +V   +     
Sbjct: 353 TTYNLFFRCYYWAFDIGSAWRLYERMRSEGCYPNTQSCMFIIRLCHRYGKVALALELWSD 412

Query: 318 --------------------CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
                               C  GK+E+A +   +M   G  P  V +   +K+L     
Sbjct: 413 MVSSSFGSLTLVSDVLLDLLCDEGKLEDAERCFCQMVELGQKPSNVAFR-RIKILMQLAK 471

Query: 358 GDEAL-RLYGRMIEVGCWPSV 377
            +E++ RL  +MI+ G  P V
Sbjct: 472 QEESIARLTEKMIQFGRLPPV 492


>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g43820-like [Cucumis sativus]
          Length = 572

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 179/426 (42%), Gaps = 33/426 (7%)

Query: 53  KLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYA 112
           KL    +   N    +E AL +  V L+ D V  VL       +    FF WA  Q +  
Sbjct: 116 KLRGVFLQKLNGKTAIEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIP 175

Query: 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN------KVFVPVDVLLM------ 160
            +  +YN+++  L    +    F  +  +L  M R         V + VD L+       
Sbjct: 176 KDASSYNIILKALGRRGF----FDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSK 231

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--G 218
            L+ +    ++  + +   LN+LL  +C+   V  A +     K  +  N  TYNI+  G
Sbjct: 232 ALQFFRNLKEIGLKCDTETLNILLQCMCRRSHVGAANSFFNLTKGNIPFNVMTYNIVIGG 291

Query: 219 M----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                      Q L+ M   G +PD  T+   I+   +A  + +A  +F+ M   G T  
Sbjct: 292 WSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLIECLGRANQIDDAVKIFDKMDENGCT-- 349

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P    Y  MI   +     ++C +    M+++ C PD++TY  ++ G   A KV +A +
Sbjct: 350 -PDVDAYNAMISNFICIGDFDQCLTYYERMLSNRCEPDMNTYSNLITGFLKAKKVADALE 408

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
             +EM  +   P       F+++ C       A+ +Y +  +VGC  S   Y +L+    
Sbjct: 409 MFDEMVAR-IIPTTGAITSFIQLSCSYGPPHAAMLIYKKARKVGCRISKNAYKLLLMRLS 467

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
             G+       W+EM + G   DV+TY   ID L    ++E A  ++EE + +G   P R
Sbjct: 468 LFGKFGMLLNIWNEMQESGYDPDVETYEHAIDCLCKTGQLENAVLVMEECLRQGF-FPSR 526

Query: 449 KFDSYL 454
           +  S L
Sbjct: 527 RTRSKL 532


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 25/282 (8%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
           L+   E + ++  P   A++ L++ L K G ++ A  + KRV                  
Sbjct: 317 LEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV------------------ 358

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
               +  G +P+ F YN  ID+ CK R   EA  LF+ M   G     P   TY+I+I  
Sbjct: 359 ----VDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM---GKIGLRPNDVTYSILIDM 411

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  +++   S LG M+++G    V  Y  ++ G C  G +  A  F+ EM NK   P 
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +VTY   +   C     ++ALRLY  M   G  PS+ T+  L+S  F  G    A + ++
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFN 531

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM +     +  TY VMI+G  +   + +A   L+E+  KG+
Sbjct: 532 EMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGI 573



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 140/326 (42%), Gaps = 21/326 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--- 217
           LK+ TEK  V   P+  +   L+  LC  G    A+     + K   + N   Y  L   
Sbjct: 565 LKEMTEKGIV---PDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHG 621

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +   +EM+Q G   D   Y   ID   K +       L + M  +G    
Sbjct: 622 FCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGL--- 678

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P    Y  MI A  +    +E F +   MIN GC+P+  TY  V+ G+C AG V EA  
Sbjct: 679 KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEV 738

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNK-NGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
              +M      P+ VTY CFL +L   + +  +A+ L+  +++ G   +  TYNMLI  +
Sbjct: 739 LCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGF 797

Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
              G  + A E    M   G + D  TY  MI+ L   + V++A  L   +  KG++   
Sbjct: 798 CRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDR 857

Query: 448 RKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +++ +    V G++G   +L + M
Sbjct: 858 VAYNTLIHGCCVAGEMGKATELRNEM 883



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 118/285 (41%), Gaps = 16/285 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
            P +   N L+D+LCK      AE +  R+ K  ++PN  TY+IL             + 
Sbjct: 364 SPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALS 423

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L EM+  G     + YN+ I+  CK   ++ A      M  K      PT  TY  ++ 
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKL---EPTVVTYTSLMG 480

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                 ++ +   L   M   G  P + T+  +L G+  AG + +A K   EM      P
Sbjct: 481 GYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP 540

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           + VTYN  ++  C+  +  +A      M E G  P   +Y  LI      G+   A    
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV 600

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
             + K  C  +   Y  ++ G     K+EEA  + +E+V +G+ L
Sbjct: 601 DGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDL 645



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 17/281 (6%)

Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+D LCK   V  A  I K +  K +KP+  TY  L            G++ ++EM+ 
Sbjct: 266 NVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLC 325

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
           +  +P     ++ ++   K   + EA +L + +   G    SP    Y  +I +L +  +
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGV---SPNLFVYNALIDSLCKGRK 382

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
             E   L   M   G  P+  TY  +++  C  GK++ A  FL EM + G    +  YN 
Sbjct: 383 FHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNS 442

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            +   C   +   A      MI     P+V TY  L+  Y   G+ + A   +HEM  +G
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
            A  + T+  ++ GLF    + +A  L  E+    +K P R
Sbjct: 503 IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVK-PNR 542



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 133/317 (41%), Gaps = 16/317 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL----------- 217
           K+  +P     ++L+D  C+ G +D A + + + V   +K +   YN L           
Sbjct: 395 KIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDIS 454

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
                + EMI     P   TY + +  +C    + +A  L+  M  KG    +P+  T+ 
Sbjct: 455 AAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGI---APSIYTFT 511

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++  L +   + +   L   M      P+  TY  ++EG C  G + +A++FL+EM  K
Sbjct: 512 TLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK 571

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           G  PD  +Y   +  LC      EA      + +  C  +   Y  L+  +   G+ + A
Sbjct: 572 GIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEA 631

Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
                EM +RG   D+  Y V+IDG       +    LL+E+ ++GLK     + S +  
Sbjct: 632 LSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDA 691

Query: 457 LSVIGDLGAIHKLSDHM 473
            S  GD      + D M
Sbjct: 692 KSKTGDFKEAFGIWDLM 708



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 5/184 (2%)

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS-PTAKTYAIMIVALV 283
           MI  G  P+  TY   I+  CKA  V EA    E + +K   +SS P   TY   +  L 
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEA----EVLCSKMQPVSSVPNQVTYGCFLDILT 763

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           + +   +    L + I  G L + +TY  ++ G C  G++EEA + +  M   G  PD +
Sbjct: 764 KGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCI 823

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  LC   +  +A+ L+  M E G  P    YN LI      GE   A E  +EM
Sbjct: 824 TYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883

Query: 404 DKRG 407
            ++G
Sbjct: 884 LRQG 887



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 113/299 (37%), Gaps = 51/299 (17%)

Query: 181 NLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N L++  CK G +  AE  + + +  K++P   TY  L             ++   EM  
Sbjct: 441 NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG 500

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G AP  +T+ T +    +A ++ +A  LF  M         P   TY +MI    +   
Sbjct: 501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEM---AEWNVKPNRVTYNVMIEGYCEEGD 557

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG-------------------------- 321
           M + F  L  M   G +PD  +Y+ ++ G+CL G                          
Sbjct: 558 MSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTG 617

Query: 322 ---------KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
                    K+EEA    +EM  +G   D+V Y   +     +K+      L   M + G
Sbjct: 618 LLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRG 677

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
             P    Y  +I    + G+   AF  W  M   GC  +  TY  +I+GL     V EA
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 39/292 (13%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P+  T +  +    K R    A +LF  M + G     P    Y  +I +L +   +   
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGI---RPDVYIYTGVIRSLCELKDLSRA 246

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
             ++ HM  +GC  ++  Y  +++G+C   KV EA    +++  K   PD+VTY   +  
Sbjct: 247 KEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYG 306

Query: 352 LCD---------------------------------NKNG--DEALRLYGRMIEVGCWPS 376
           LC                                   K G  +EAL L  R+++ G  P+
Sbjct: 307 LCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPN 366

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           +  YN LI    +  +   A   +  M K G   +  TY ++ID      K++ A   L 
Sbjct: 367 LFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLG 426

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK-LSDHMRKFYNPVIARRLAL 487
           E+V+ GLKL    ++S +      GD+ A    +++ + K   P +    +L
Sbjct: 427 EMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 25/197 (12%)

Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
           +++ LCK G V+ AE +C    +K++P                  +   P+  TY   +D
Sbjct: 723 VINGLCKAGFVNEAEVLC----SKMQP------------------VSSVPNQVTYGCFLD 760

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
              K  +  + A        KG  + + TA TY ++I    +  R+EE   L+  MI  G
Sbjct: 761 ILTKGEVDMQKAVELHNAILKG--LLANTA-TYNMLIRGFCRQGRIEEASELITRMIGDG 817

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             PD  TY  ++  +C    V++A +    M  KG  PD V YN  +   C      +A 
Sbjct: 818 VSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKAT 877

Query: 363 RLYGRMIEVGCWPSVQT 379
            L   M+  G  P+ +T
Sbjct: 878 ELRNEMLRQGLIPNNKT 894



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 13/107 (12%)

Query: 181 NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+   C+ G ++ A E I + + + V P+  TY  +             ++    M +
Sbjct: 791 NMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTE 850

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
            G  PD   YNT I   C A  + +A +L   M  +G   ++ T++T
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 187/421 (44%), Gaps = 39/421 (9%)

Query: 74  SLGVPLTTDSV----VGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           S G+  T+DSV    +G+++   F +K  +A   F +  +++++A   +  N ++ ++ S
Sbjct: 136 SDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFAS--ILSNSVVAVIIS 193

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------Q 174
              K  +     S+L  + RN+ V + +     ++  Y    + +              +
Sbjct: 194 VLGKEGRASFAASLLHDL-RNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCR 252

Query: 175 PEINALNLLLDALCKCGL--VDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           P +   N++L+   K G+     A  +     + V P+  TYN L              +
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM   G +PD  TYN  +D + K+R   EA ++ + M   G    +P+  TY  +I 
Sbjct: 313 VFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGF---APSIVTYNSLIS 369

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A  ++  ++E   L   M+  G  PDV TY  +L G    GK + A K  EEM   G  P
Sbjct: 370 AYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQP 429

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +I T+N  +K+  +  N  E ++++  +    C P + T+N L++++ + G        +
Sbjct: 430 NICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM + G   + DT+  +I     C   ++A  +   +++ G+      +++ L  L+  
Sbjct: 490 KEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARG 549

Query: 461 G 461
           G
Sbjct: 550 G 550



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 118/280 (42%), Gaps = 51/280 (18%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPN-----------AN 212
           Y   +     P+++  N +L AL + GL + +E +   +K+ + KPN           AN
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 213 TYNILGMQTLEEMI------------------------------------QMGHAPDNFT 236
              +  M  L E I                                    + G +PD  T
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
            N  +  + + RMV++  ++  F++  G T   P+  TY  ++    + +  E+   +L 
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFT---PSLTTYNSLMYMYSRTEHFEKSEDILR 700

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            +I  G  PD+ ++  V+   C  G+++EA +   EM + G  PD++TYN F+     + 
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              EA+ +   MI+  C P+  TYN LI  + +L   D A
Sbjct: 761 MFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEA 800



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I    K    + AA L   +R  G  I       Y  +I A   N R  E   +   +  
Sbjct: 192 ISVLGKEGRASFAASLLHDLRNDGVHID---IYAYTSLITAYASNGRYREAVMVFKKLEE 248

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYK----FLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            GC P + TY  +L    + GK+   +      ++ M + G  PD+ TYN  +       
Sbjct: 249 EGCRPTLITYNVILN---VYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGS 305

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +EA  ++  M   G  P   TYN L+ +Y +   P  A E   EM+  G A  + TY 
Sbjct: 306 LYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYN 365

Query: 417 VMI-----DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
            +I     DGL D     EA  L  ++V KG+K     + + L      G      K+ +
Sbjct: 366 SLISAYARDGLLD-----EAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFE 420

Query: 472 HMR 474
            MR
Sbjct: 421 EMR 423



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 16/258 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           PE +  N L+ A  +CG  D A  I +R+ +  V P+ +TYN +              + 
Sbjct: 499 PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKV 558

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM      P+  TY + +  +   + V   + L E +    S I  P A     +++ 
Sbjct: 559 LAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY---SGIIEPQAVLLKTLVLV 615

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++D + E       +   G  PD++T   ++        V +  + L  + + G+ P 
Sbjct: 616 YSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPS 675

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  + +    ++ +++  +   +I  G  P + ++N +I  Y   G    A   + 
Sbjct: 676 LTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFA 735

Query: 402 EMDKRGCAQDVDTYCVMI 419
           EM   G A DV TY   I
Sbjct: 736 EMKDFGLAPDVITYNTFI 753



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKP 209
           V+   D+L    + + E  +    P+I  LN ++    +  +V     I   +K+    P
Sbjct: 615 VYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTP 674

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +  TYN L                L E+I  G  PD  ++NT I  +C+   + EA+ +F
Sbjct: 675 SLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIF 734

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M+  G    +P   TY   I +   +    E   ++ +MI + C P+ +TY  +++  
Sbjct: 735 AEMKDFGL---APDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWF 791

Query: 318 CLAGKVEEAYKFLEEMGN 335
           C   + +EA  F+  + N
Sbjct: 792 CKLNRRDEANSFISNLRN 809



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 13/115 (11%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN---------- 215
           E I    +P+I + N ++ A C+ G +  A  I   +K+  + P+  TYN          
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760

Query: 216 --ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
             I  +  ++ MI+    P+  TYN+ ID FCK     EA      +R    +++
Sbjct: 761 MFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSVT 815


>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 376

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L +MI+ G  P+   YNT I+    A    +A  +F   R  G+   SPT  TY  +
Sbjct: 149 LSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVF---REMGTMHCSPTIITYNTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +N+   E ++L+  +++ G  P V TY  +++G+CL  +VE A +   ++ +KG+
Sbjct: 206 INGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ ++N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            W  + + G   D+ +Y + + GL  C+++ +A   L + V K + L
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 4/213 (1%)

Query: 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290
           +PD   YN  ++ + +   + +  +L+E M ++G+     +  ++ IM+  L  N +++E
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR----SVSSFNIMMRGLFDNGKVDE 77

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350
             S+   M  SG + D  TY  ++ G C  G ++++   LE    KG   D   Y+  + 
Sbjct: 78  VISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMIN 137

Query: 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410
            LC   N D AL +   MI+ GC P+V  YN LI+      + + A   + EM    C+ 
Sbjct: 138 GLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197

Query: 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            + TY  +I+GL       EA  L++E+++KGL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGL 230



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 7/179 (3%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++ S   PD   Y  +L G     K+++ ++  E MG++G    + ++N  ++ L DN  
Sbjct: 16  IVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNGK 74

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DE + ++  M E G      TY +L+  + + G  D +       +++G   D   Y  
Sbjct: 75  VDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           MI+GL   + ++ A  +L +++  G K     ++      ++I  L    K  D +R F
Sbjct: 135 MINGLCKEANLDRALSVLNDMIKSGCKPNVHVYN------TLINGLVGASKFEDAIRVF 187



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y +++E    P    YN +++ YF + +    FE W  M   G  + V
Sbjct: 1   CESGDIDGAKRVYKKIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ +M+ GLFD  KV+E   + E +   G 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGF 90


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 134/274 (48%), Gaps = 28/274 (10%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
           T  ++    P+    N+L+DALCK G +  A+ +                         M
Sbjct: 254 TMMVRGNINPDDYTFNILVDALCKEGRIVEAQGV----------------------FAVM 291

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
           ++ G  PD  TYN  ++ FC +  V+EA +LF  M  +G     P    Y ++I    + 
Sbjct: 292 MKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGL---EPDVLNYNVLINGYCKI 348

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
           D ++E   L   +     +P+++TY  +++G+C  G++    + ++EM ++G  PDIVTY
Sbjct: 349 DMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTY 408

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N FL   C +K  ++A+ L+ R I  G WP    Y++++  + +  +   A E    +  
Sbjct: 409 NIFLDAFCKSKPYEKAISLF-RQIVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLI 467

Query: 406 RGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEV 438
            GC  +V TY +MI+ L  DCS  +EA  LL ++
Sbjct: 468 HGCCPNVRTYTIMINALCKDCS-FDEAMTLLSKM 500



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 133/289 (46%), Gaps = 20/289 (6%)

Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP---------------NANT 213
           +K+  QP +   N L++  C  G+V  A      +  K  P               N  T
Sbjct: 117 LKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQT 176

Query: 214 YNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
            + L  Q L++M +    P+  TY+T ID  CK R++ +A  LF  + ++G  +      
Sbjct: 177 RDAL--QLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVD---VV 231

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            Y  +I       +  E   LL  M+     PD  T+  +++ +C  G++ EA      M
Sbjct: 232 AYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVM 291

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G  PDIVTYN  ++  C + N  EA  L+ RM++ G  P V  YN+LI+ Y ++   
Sbjct: 292 MKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMV 351

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           D A   + E+  +    ++ TY  +IDGL    ++     L++E+ ++G
Sbjct: 352 DEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRG 400



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 16/312 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQT 221
           P I  L +L++  C    + +A ++   + K   +PN  T+N L             M  
Sbjct: 88  PSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAF 147

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +++  G+  D F+Y + I+  CK     +A  L + M      +  P   TY+ +I  
Sbjct: 148 RLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKME---EDLVRPNLITYSTVIDG 204

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L ++  + +   L   + + G L DV  Y  ++ G C  G+  EA + L  M      PD
Sbjct: 205 LCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPD 264

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             T+N  +  LC      EA  ++  M++ G  P + TYN L+  +        A E ++
Sbjct: 265 DYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFN 324

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
            M KRG   DV  Y V+I+G      V+EA  L +E+  K L      ++S +  L  +G
Sbjct: 325 RMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLG 384

Query: 462 DLGAIHKLSDHM 473
            +  + +L D M
Sbjct: 385 RMSCVQELVDEM 396



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 17/221 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM-- 219
           +   +K   +P++   N+L++  CK  +VD A  + K ++ K + PN  TYN L  G+  
Sbjct: 323 FNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCK 382

Query: 220 --------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                   + ++EM   G +PD  TYN  +D FCK++   +A  LF  +  +G     P 
Sbjct: 383 LGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI-VQGIW---PD 438

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
              Y +++    + ++++     L H++  GC P+V TY  ++  +C     +EA   L 
Sbjct: 439 FYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLS 498

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           +M +   PPD VT+   +  L +    D+A +L   MIE G
Sbjct: 499 KMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERG 539



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 3/219 (1%)

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
           +   M++    P  F ++  +    +      A  LF  + +KG T   P+  T  I+I 
Sbjct: 42  SFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGIT---PSIATLTILIN 98

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
                  +   FSLLG ++  G  P++ T+  ++ G C+ G V +A  F  ++  KGYP 
Sbjct: 99  CYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPL 158

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D  +Y   +  LC N    +AL+L  +M E    P++ TY+ +I    +      A   +
Sbjct: 159 DEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLF 218

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             +  RG   DV  Y  +I G     +  EA  LL  +V
Sbjct: 219 SLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMV 257



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 129/327 (39%), Gaps = 51/327 (15%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           L  +   ++    P I   + LL A+ + G    A ++  ++ +K + P+  T  IL   
Sbjct: 40  LLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINC 99

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                        L  +++MG  P+  T+NT I+ FC   MV++A      +  KG  + 
Sbjct: 100 YCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPL- 158

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
                                                D  +Y  ++ G+C  G+  +A +
Sbjct: 159 -------------------------------------DEFSYGSLINGLCKNGQTRDALQ 181

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
            L++M      P+++TY+  +  LC ++   +ALRL+  +   G    V  YN LI    
Sbjct: 182 LLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCC 241

Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
            +G+   A      M +     D  T+ +++D L    ++ EA  +   ++ +G K    
Sbjct: 242 SVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIV 301

Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
            +++ +    +  ++    +L + M K
Sbjct: 302 TYNALMEGFCLSNNVSEARELFNRMVK 328


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILG----------MQT 221
           P+I   N ++  L K G ++ A T    ++ + +KP+A T+   ILG           + 
Sbjct: 218 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 277

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  P+N  Y   I+   KA  + EA  +F  +   G     P  +T +  I  
Sbjct: 278 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL---PDVQTCSAFIHG 334

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L++N R++E   +   +   G +PDV TY  ++ G C  G+VE+A++  +EM  KG  P+
Sbjct: 335 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPN 394

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           I  YN  +  LC + +   A +L+  M E G  P   TY+ +I  Y +      AF  +H
Sbjct: 395 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 454

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM  +G       Y  ++ G      +E+A  L  E++ KG 
Sbjct: 455 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 135/306 (44%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N+L+  LCK G ++ A  I K  +    KPN+ T+ +L             ++ L+EM +
Sbjct: 84  NVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 143

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
               P   +Y   I+  C  + ++ A  L E M   G     P    Y+ +I+      R
Sbjct: 144 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGL---KPNVVVYSTLIMGYASEGR 200

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +EE   LL  M  SG  PD+  Y  ++  +  AGK+EEA  +L E+  +G  PD VT+  
Sbjct: 201 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA 260

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
           F+          EA + +  M++ G  P+   Y +LI+ +F+ G    A   +  +   G
Sbjct: 261 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 320

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              DV T    I GL    +V+EA  +  E+  KGL      + S +      G++    
Sbjct: 321 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 380

Query: 468 KLSDHM 473
           +L D M
Sbjct: 381 ELHDEM 386



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 120/277 (43%), Gaps = 15/277 (5%)

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           PN  TY I+               T EEM + G  PD    +  ID F +   + E   +
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
            + M + G  I+     TY ++I  L +  +ME+   +L  MI  GC P+  T+  ++EG
Sbjct: 68  KDVMVSCGIPIN---LITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 124

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
            C    +  A + L+EM  +   P  V+Y   +  LC  K+   A +L  +M   G  P+
Sbjct: 125 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 184

Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
           V  Y+ LI  Y   G  + A      M   G A D+  Y  +I  L    K+EEA   L 
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 244

Query: 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           E+  +GLK     F ++++  S  G +    K  D M
Sbjct: 245 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 281



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 135/329 (41%), Gaps = 34/329 (10%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P++   +  +  L K G V  A  +   +K K + P+  TY+ L              + 
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 382

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM   G AP+ F YN  +D  CK+  +  A  LF+ M  KG     P + TY+ MI  
Sbjct: 383 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL---EPDSVTYSTMIDG 439

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +++ + E FSL   M + G  P    Y  ++ G C  G +E+A     EM  KG+   
Sbjct: 440 YCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 499

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE--------- 392
           + ++N  +   C +    EA +L+  MI     P   TY  +I  + + G+         
Sbjct: 500 L-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 558

Query: 393 --------PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
                    D  F  + +M  +G   D  TY ++I        + EA  L +EVV KG+ 
Sbjct: 559 EMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGML 618

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                 D  +  L    DL    KL D M
Sbjct: 619 TKGTIHDLLITALCKREDLTEASKLLDEM 647



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 34/296 (11%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           +P+    + ++D  CK   V  A ++   + +K V+P++  YN L             M 
Sbjct: 427 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 486

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
              EM+Q G A    ++NT ID +CK+  + EA+ LF+ M  K      P   TY  +I 
Sbjct: 487 LFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIM---PDHVTYTTVID 542

Query: 281 ALVQNDRMEEC-----------------FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
              +  +MEE                  F+L   M+  G  PD  TY  V+   C    +
Sbjct: 543 WHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNL 602

Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            EA+K  +E+  KG       ++  +  LC  ++  EA +L   M E+G  PS+   + L
Sbjct: 603 VEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTL 662

Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           +  + E G+ D A   +  +   G   D  T   +++G  + +  E+A  L++++V
Sbjct: 663 VRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 124/299 (41%), Gaps = 34/299 (11%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P I   N L+D LCK G +  A  +   +  K ++P++ TY+ +                
Sbjct: 393 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 452

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             EM   G  P +F YN  +   CK   + +A +LF  M  KG      T  ++  +I  
Sbjct: 453 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA----TTLSFNTLIDG 508

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA--------------- 326
             ++ +++E   L   MI    +PD  TY  V++  C AGK+EEA               
Sbjct: 509 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 568

Query: 327 --YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
             +   E+M  KG  PD VTY   +   C   N  EA +L   ++  G       +++LI
Sbjct: 569 TVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLI 628

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +   +  +   A +   EM + G    +     ++    +  K++EA  + E V + GL
Sbjct: 629 TALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGL 687



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 40/316 (12%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYA----ETICKRVKNKVKPNANTYNIL 217
           LK ++E  +    P++   + L+   CK G V+ A    + +C +    + PN   YN L
Sbjct: 345 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK---GIAPNIFIYNAL 401

Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
                         +  + M + G  PD+ TY+T ID +CK+  V EA  LF  M +KG 
Sbjct: 402 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 461

Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
               P +  Y  ++    +   ME+  +L   M+  G    +S +  +++G C + K++E
Sbjct: 462 ---QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQE 517

Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA-----------------LRLYGRM 368
           A +  +EM  K   PD VTY   +   C     +EA                   L+ +M
Sbjct: 518 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKM 577

Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
           +  G  P   TY ++I  + +      AF+   E+  +G       + ++I  L     +
Sbjct: 578 VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDL 637

Query: 429 EEACFLLEEVVNKGLK 444
            EA  LL+E+   GLK
Sbjct: 638 TEASKLLDEMGELGLK 653



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 35/211 (16%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD---------------- 341
           M   G +P+  TY  +  G+C A ++ EA    EEM   G  PD                
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 342 -------------------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
                              ++TYN  +  LC     ++A  +   MI +GC P+ +T+ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           LI  Y        A E   EM+KR       +Y  MI+GL  C  +  A  LLE++   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           LK     + + +M  +  G +    +L D M
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGM 211


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 146/343 (42%), Gaps = 47/343 (13%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P +  LN LL AL +  +    E++  R+  +   N  TY  L              Q L
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPAR---NLRTYTTLINAYCLAGDIPAAKQHL 95

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------------------ 264
             ++  G APD++ Y + +  +C+A M+T A  +F  M  +G                  
Sbjct: 96  TSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGA 155

Query: 265 --------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
                         +   +P    YA M+  L +  R EE   LL   +++G  P++  Y
Sbjct: 156 GMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
             +++G C AG++E A K  E M      P++ TY   +  LC +   + A+ L+ RM+E
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
            G  P+V TY  LI      G    AF   H M+  G   +  T+ V+ID L    KVEE
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           A   L  +V KG+K+    + S +  L   G + A  +L   M
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKM 378



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 19/302 (6%)

Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------G 218
           +  P +     L+  LCK G V+ A  +  R V+  ++PN  TY  L             
Sbjct: 242 RCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA 301

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            + L  M   G  P+++T++  ID  CK   V EA      +  KG  ++      Y  +
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE---VVYTSL 358

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +  +++    L+  MI+ G +PD  +Y  +++G+C   K+ +A   LE+M  KG 
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
               VTY   +  L      +   +++ +MI  G  P + TY + +  Y E G  + A  
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
              +M  RG   ++ TY  +I G  +   V +A    E +V KG K      DSY + L 
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWK---PNEDSYTVLLR 535

Query: 459 VI 460
           ++
Sbjct: 536 LV 537



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
           G  P+   YN  ID +C A  +  A  +FE M        SP  +TY  +I  L ++ ++
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGM---DGNRCSPNVRTYTELIHGLCKSGKV 263

Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
           E    L   M+ +G  P+V TY  +++G C  G ++ A++ L  M   G  P+  T++  
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323

Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
           +  LC  +  +EA    G +++ G   +   Y  LI    + G+ D A E   +M   G 
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             D  +Y  +IDGL    K+ +A  +LE+++ KG++
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ 419



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 136/284 (47%), Gaps = 18/284 (6%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
           +P I   N L+D  C  G +++A  + + +  N+  PN  TY  L             M 
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M++ G  P+  TY   I   C    +  A  L   M T G     P   T++++I 
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV---PNDWTFSVLID 325

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL + +++EE    LG ++  G   +   Y  +++G+C  GK++ A + +++M ++G+ P
Sbjct: 326 ALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVP 385

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-SMYFELGEPDGAFET 399
           D  +Y+  +  LC  K   +A  +   M+E G   S  TY ++I  +  E+G  +G  + 
Sbjct: 386 DAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGS-EGPKKI 444

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           + +M   G   D+ TY V +    +  ++E+A  ++ ++V++G+
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 129/282 (45%), Gaps = 28/282 (9%)

Query: 175 PEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL--GM----------QT 221
           P     ++L+DALCK   V+ A+  +   VK  VK N   Y  L  G+          + 
Sbjct: 315 PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADEL 374

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           +++MI  G  PD  +Y++ ID  C+ + +++A  + E M  KG   +SP   TY I+I  
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ-ASPV--TYTIIIDE 431

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           LV+    E    +   MI +G  PD+ TY   +   C  G++E+A   + +M ++G  P+
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW- 400
           +VTYN  ++   +     +A   +  M+  G  P+  +Y +L+ +  +    D + + W 
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551

Query: 401 -----------HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
                       ++ +R      D Y   I  L    ++EEA
Sbjct: 552 IADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEA 593


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 187/464 (40%), Gaps = 96/464 (20%)

Query: 72  LDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131
           + S         +VG + R      +A +FF W+  Q+ Y H+   Y  ++  L   +  
Sbjct: 1   MASFNAAFLEPRLVGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRT 60

Query: 132 AKQFRLV----------------------CSMLD------YMKRNNKVFVPVDVLL--MI 161
            +  R                        C++ +      Y+     + +P DV    ++
Sbjct: 61  REAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVV 120

Query: 162 LKQYTE------------KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VK 208
           LK Y +            K+    +P +   N +++ LCK G +D+A  +  R+ +  V 
Sbjct: 121 LKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVD 180

Query: 209 PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
           P+  TY+ L             ++  + M++  +  D   YN   D FCK R V EA ++
Sbjct: 181 PDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEV 240

Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQ-NDRMEECFSLLGHMINSGCLPDVSTYK---- 311
            + M  +G     P+  TY  +I  + Q  +R+EE + L   M+ S C P+  TY     
Sbjct: 241 LKTMIQRGC---KPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMIL 297

Query: 312 ------------EVLEGMCLAG-------------------KVEEAYKFLEEMGNKGYPP 340
                       E+ +GM  AG                   K++EA   L++       P
Sbjct: 298 GLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGP 357

Query: 341 DIVTYNCFLKVLCDNKNG--DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
           D+  Y   +   C  +    DEAL L+  M +   WP+V TYN+++    + G  D A++
Sbjct: 358 DVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQ 417

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            + EM K  C+ +  T+ VM  G+  C K ++   +  ++V KG
Sbjct: 418 IFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMVYKG 461



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 22/236 (9%)

Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALC--KCGLVDYAETICKRVKNKVKPNAN 212
           VD  L +LK   ++     +P +   N +++ +C  K  + +      + V +   PNA 
Sbjct: 234 VDEALEVLKTMIQR---GCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAV 290

Query: 213 TYN--ILGMQTLEE----------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260
           TY   ILG+  + E          M + G +PD + Y++ I  F K R + EA  + +  
Sbjct: 291 TYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQ-- 348

Query: 261 RTKGSTISSPTAKTYAIMIVAL--VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
                    P    Y  +I      +  R++E   L  +M +    P+V TY  VL G+C
Sbjct: 349 -DAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLC 407

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
             G+ +EAY+  +EM      P+ +T+      +      D+  R++  M+  G W
Sbjct: 408 KTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMVYKGRW 463


>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 376

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L  MI+ G  P+   YNT I+    A    +A  +F   R  G+   SPT  TY  +
Sbjct: 149 VSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF---REMGTMHCSPTIITYNTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +N+   E ++L+  +++ G  P V TY  +++G+CL  KVE+A +   ++ +KG+
Sbjct: 206 INGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ ++N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            W  + + G   D+ +Y + + GL  C+++ +A   L + V K + L
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +E+++   +PD   YN  ++ + +   + +  +L+E M ++G+     +  ++ IM+  L
Sbjct: 14  KEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR----SVSSFNIMMRGL 69

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             N +++E  S+   M  SG + D  TY  ++ G C  G ++++   LE    KG   D 
Sbjct: 70  FDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVLDA 129

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
             Y+  +  LC   N D A+ +   MI+ GC P+   YN LI+      + + A   + E
Sbjct: 130 FAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE 189

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M    C+  + TY  +I+GL       EA  L++E+++KGL
Sbjct: 190 MGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL 230



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 7/179 (3%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           ++ S   PD   Y  +L G     K+++ ++  E MG++G    + ++N  ++ L DN  
Sbjct: 16  IVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNGK 74

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
            DE + ++  M + G      TY +L+  + + G  D +        ++G   D   Y  
Sbjct: 75  VDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVLDAFAYSA 134

Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
           MI+GL   + ++ A  +L  ++  G K     ++      ++I  L    K  D +R F
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYN------TLINGLVGASKFEDAIRVF 187



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  ++E    P    YN +++ YF + +    FE W  M   G  + V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ +M+ GLFD  KV+E   + E +   G 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGF 90


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 187/421 (44%), Gaps = 39/421 (9%)

Query: 74  SLGVPLTTDSV----VGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           S G+  T+DSV    +G+++   F +K  +A   F +  +++++A   +  N ++ ++ S
Sbjct: 136 SDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFAS--ILSNSVVAVIIS 193

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------Q 174
              K  +     S+L  + RN+ V + +     ++  Y    + +              +
Sbjct: 194 VLGKEGRASFAASLLHDL-RNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCR 252

Query: 175 PEINALNLLLDALCKCGL--VDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           P +   N++L+   K G+     A  +     + V P+  TYN L              +
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM   G +PD  TYN  +D + K+R   EA ++ + M   G    +P+  TY  +I 
Sbjct: 313 VFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGF---APSIVTYNSLIS 369

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           A  ++  ++E   L   M+  G  PDV TY  +L G    GK + A K  EEM   G  P
Sbjct: 370 AYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQP 429

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           +I T+N  +K+  +  N  E ++++  +    C P + T+N L++++ + G        +
Sbjct: 430 NICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM + G   + DT+  +I     C   ++A  +   +++ G+      +++ L  L+  
Sbjct: 490 KEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARG 549

Query: 461 G 461
           G
Sbjct: 550 G 550



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 119/280 (42%), Gaps = 51/280 (18%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPN-----------AN 212
           Y   +     P+++  N +L AL + GL + +E +   +K+ + KPN           AN
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 213 TYNILGMQTLEEMI------------------------------------QMGHAPDNFT 236
              +  M  L E I                                    + G +PD  T
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
            N  +  + + RMV++  ++  F++  G T   P+  TY  ++    + +  E+   +L 
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFT---PSLTTYNSLMYMYSRTEHFEKSEDILR 700

Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            +I  G  PD+ ++  V+   C  G+++EA +   EM + G  PD++TYN F+     + 
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
              EA+ +   MI+ GC P+  TYN LI  + +L   D A
Sbjct: 761 MFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEA 800



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 16/293 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           PE +  N L+ A  +CG  D A  I +R+ +  V P+ +TYN +              + 
Sbjct: 499 PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKV 558

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM      P+  TY + +  +   + V   + L E +    S I  P A     +++ 
Sbjct: 559 LAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY---SGIIEPQAVLLKTLVLV 615

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             ++D + E       +   G  PD++T   ++        V +  + L  + + G+ P 
Sbjct: 616 YSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPS 675

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TYN  + +    ++ +++  +   +I  G  P + ++N +I  Y   G    A   + 
Sbjct: 676 LTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFA 735

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
           EM   G A DV TY   I      S   EA  +++ ++  G K     ++S +
Sbjct: 736 EMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLI 788



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I    K    + AA L   +R  G  I       Y  +I A   N R  E   +   +  
Sbjct: 192 ISVLGKEGRASFAASLLHDLRNDGVHID---IYAYTSLITAYASNGRYREAVMVFKKLEE 248

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYK----FLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
            GC P + TY  +L    + GK+   +      ++ M + G  PD+ TYN  +       
Sbjct: 249 EGCRPTLITYNVILN---VYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGS 305

Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
             +EA  ++  M   G  P   TYN L+ +Y +   P  A E   EM+  G A  + TY 
Sbjct: 306 LYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYN 365

Query: 417 VMI-----DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
            +I     DGL D     EA  L  ++V KG+K     + + L      G      K+ +
Sbjct: 366 SLISAYARDGLLD-----EAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFE 420

Query: 472 HMR 474
            MR
Sbjct: 421 EMR 423



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 16/198 (8%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKP 209
           V+   D+L    + + E  +    P+I  LN ++    +  +V     I   +K+    P
Sbjct: 615 VYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTP 674

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           +  TYN L                L E+I  G  PD  ++NT I  +C+   + EA+ +F
Sbjct: 675 SLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIF 734

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M+  G    +P   TY   I +   +    E   ++ +MI +GC P+ +TY  +++  
Sbjct: 735 AEMKDFGL---APDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWF 791

Query: 318 CLAGKVEEAYKFLEEMGN 335
           C   + +EA  F+  + N
Sbjct: 792 CKLNRRDEASSFISNLRN 809



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYN---------- 215
           E I    +P+I + N ++ A C+ G +  A  I   +K+  + P+  TYN          
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760

Query: 216 --ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
             I  +  ++ MI+ G  P+  TYN+ ID FCK     EA+     +R    +++
Sbjct: 761 MFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVT 815


>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
 gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
          Length = 475

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 179/419 (42%), Gaps = 58/419 (13%)

Query: 78  PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRL 137
           P+ + S V  L   Q +  +A   F +A  Q N+ H   +Y ++I  L   KY    F  
Sbjct: 63  PIGSPSRVQKLIASQSDPLLAKEIFDYASRQPNFQHSYSSYLILILKLGRAKY----FSF 118

Query: 138 VCSMLDYMKRNNKVFVPVDVLLMI------------LKQYTEKIKVKTQPEINALNLLLD 185
           +  +L  +K  N    P     +I            LK +   +K    P    LN +L+
Sbjct: 119 IDDLLTDLKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPSPKHLNGILE 178

Query: 186 ALCKCGLVDYAETICKRVKNKVKP------NANTYNILGMQTLEEMIQMGHAPDNFTYNT 239
            L                +N +KP      +A+TY++               P+  +YN 
Sbjct: 179 ILVS-------------HQNYIKPAFDLFKDAHTYDVF--------------PNTKSYNI 211

Query: 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
            I  FC    ++ A  LF  M  +      P  ++Y I++ AL +  ++     LL  M+
Sbjct: 212 LIRAFCLNGQISMAYSLFNQMFKRDVM---PDVESYRILMQALCRKSQVNGAVDLLEDML 268

Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
           N G +PD  +Y  +L  +C   K+ EAYK L  M  KG  PDI+ YN  +   C      
Sbjct: 269 NKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAM 328

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           +A ++   M   GC P++ +Y  L+    + G  D A     EM  +G +        +I
Sbjct: 329 DACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALI 388

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI---GDLGAIHKLSDHMRK 475
            G  +  K+EEAC ++EE++  G + P+   ++++M +S I    DL  I ++ D ++K
Sbjct: 389 KGFCNVGKIEEACGVVEELLKHG-EAPHT--ETWVMMVSRICEVDDLQRIGEILDKVKK 444


>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 376

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 3/223 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L  MI+ G  P+   YNT I+ F  A    +A  +F   R  GS   SPT  TY  +
Sbjct: 149 VSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVF---REMGSMDCSPTIVTYHTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L + +R  E + L+  M+  G  P V TY  +++G+C   KVE A +   ++ +KG+
Sbjct: 206 INGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ T+N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
            W  + + G   D+ +Y + + GL  C+++  A   L + + K
Sbjct: 326 IWARILRSGLQPDIISYNITLKGLCSCNRISFAILFLHDALTK 368



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 50/329 (15%)

Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----- 217
           + Y E  + K  P+    N +L    + G +     + + +  K   N  ++NI+     
Sbjct: 11  RVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGSQNVVSFNIMMRGLF 70

Query: 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
                   +   E M + G   D+ TY   ID FCK   + ++  + E    KG  +   
Sbjct: 71  DNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLD-- 128

Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD------------------------ 306
            A  Y+ MI  L +  ++++  S+L  MI SGC P+                        
Sbjct: 129 -AFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVF 187

Query: 307 -----------VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
                      + TY  ++ G+C   +  EAY  ++EM  KG+ P ++TY+  +K LC  
Sbjct: 188 REMGSMDCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQG 247

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
              + AL+L+ +++  G  P VQ +N+LI     +G+   A   + +M+   CA ++ T+
Sbjct: 248 HKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTH 307

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             +++G +    +  A  +   ++  GL+
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRSGLQ 336



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C +G ++ A +   EM      PD V YN  L          +   L+  M   G   +V
Sbjct: 1   CESGDIDGAKRVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGS-QNV 59

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            ++N+++   F+ GE D A   W  M K G  +D  TY ++IDG      + ++  +LE 
Sbjct: 60  VSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEI 119

Query: 438 VVNKG 442
              KG
Sbjct: 120 AEGKG 124



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
           ++ + E   +   P I   + L++ LCK      A  + K +  K  KP   TY++L   
Sbjct: 184 IRVFREMGSMDCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKG 243

Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                     +Q   +++  G  PD   +N  I   C       A  L+  M        
Sbjct: 244 LCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNC--- 300

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
           +P   T+  ++    ++  +     +   ++ SG  PD+ +Y   L+G+C   ++  A  
Sbjct: 301 APNLVTHNTLMEGFYKDGDIRNALVIWARILRSGLQPDIISYNITLKGLCSCNRISFAIL 360

Query: 329 FLEEMGNKGYPPDIVT 344
           FL +   K   P I+T
Sbjct: 361 FLHDALTKKIFPTIIT 376


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 134/284 (47%), Gaps = 16/284 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+I   ++L+ A   CG++D A  I   +++  VKP+  TY  +             M+ 
Sbjct: 396 PDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEK 455

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
             +MI  G APD + Y+  I  FC    + +A +L   +   G  +       ++ +I  
Sbjct: 456 FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLD---IVFFSSIINN 512

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ +  ++    +N G  PD   Y  +++G CL GK+E+A +  + M + G  P+
Sbjct: 513 LCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 572

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V Y   +   C     DE L L+  M++ G  PS   YN++I   F  G    A   +H
Sbjct: 573 VVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFH 632

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
           EM + G A +  TY +++ G F     +EA FL +E+    +K+
Sbjct: 633 EMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKI 676



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 16/291 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
           + E ++    P++   + ++ ALCK   +  AE   +++ NK V P+  TYN L      
Sbjct: 246 FKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 305

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                  ++  +EM +    PD  T N  + + CK   + EA D+F+ M  KG    +P 
Sbjct: 306 TGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQ---NPD 362

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             +Y IM+        + +   L   M+  G  PD+ T+  +++     G +++A     
Sbjct: 363 VFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFN 422

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
           EM + G  PD+VTY   +  LC     D+A+  + +MI+ G  P    Y+ LI  +   G
Sbjct: 423 EMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 482

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
               A E   E+   G   D+  +  +I+ L    ++ +A  + +  VN G
Sbjct: 483 SLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVG 533



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 16/301 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
            P++ A   ++D   K G V+ A  + K  V+  + P+  TY+ +               
Sbjct: 220 SPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEA 279

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L +M+  G  PDN+TYN  I  +       EA  +F+ MR + S +  P   T  +++ 
Sbjct: 280 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR-RHSIL--PDVVTLNMLMG 336

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           +L +  +++E   +   M   G  PDV +YK +L G    G + +     + M   G  P
Sbjct: 337 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAP 396

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           DI T++  +K   +    D+A+ ++  M + G  P V TY  +I+    +G+ D A E +
Sbjct: 397 DIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKF 456

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           ++M  +G A D   Y  +I G      + +A  L+ E++N G++L    F S +  L  +
Sbjct: 457 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKL 516

Query: 461 G 461
           G
Sbjct: 517 G 517



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 4/189 (2%)

Query: 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320
           R +G  + SPT+ TYAI++    +  R E   +  G ++ +G   D+     +L+G C A
Sbjct: 104 RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEA 163

Query: 321 GKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSV 377
            + +EA    L      G  PD+ +Y+  LK LCD     +A  L   M E G  C P V
Sbjct: 164 KRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDV 223

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             Y  +I  +F+ G+ + A + + EM +RG   D+ TY  ++  L     + +A   L +
Sbjct: 224 VAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQ 283

Query: 438 VVNKGLKLP 446
           +VNKG+ LP
Sbjct: 284 MVNKGV-LP 291



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 42/290 (14%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L    ++G  PD F+Y+  + + C      +A DL   M  +G  + SP    Y  +I  
Sbjct: 174 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMM-AEGGAVCSPDVVAYTTVIDC 232

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +   + +   L   M+  G  PD+ TY  V+  +C A  + +A  FL +M NKG  PD
Sbjct: 233 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPD 292

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TYN  +          EA+R++  M      P V T NML+    + G+   A + + 
Sbjct: 293 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFD 352

Query: 402 EMDKRGCAQDVDTYCVMIDG------------LFD-----------------------CS 426
            M  +G   DV +Y +M++G            LFD                       C 
Sbjct: 353 TMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCG 412

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
            +++A  +  E+ + G+K         +   +VI  L  I K+ D M KF
Sbjct: 413 MLDKAMIIFNEMRDHGVK------PDVVTYTTVIAALCRIGKMDDAMEKF 456



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 16/250 (6%)

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           + P ++TY IL             +    ++++ G   D    N  +  FC+A+   EA 
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKE 312
           D+      +   +  P   +Y+I++ +L    +  +   LL  M   G  C PDV  Y  
Sbjct: 171 DILLHRTPELGCV--PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTT 228

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           V++     G V +A    +EM  +G PPD+VTY+  +  LC  +   +A     +M+  G
Sbjct: 229 VIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKG 288

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P   TYN LI  Y   G+   A   + EM +     DV T  +++  L    K++EA 
Sbjct: 289 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEAR 348

Query: 433 FLLEEVVNKG 442
            + + +  KG
Sbjct: 349 DVFDTMAMKG 358



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 16/259 (6%)

Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYN----- 215
           ++++ + I     P+  A + L+   C  G L+   E I + + N ++ +   ++     
Sbjct: 453 MEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINN 512

Query: 216 ------ILGMQTLEEM-IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                 I+  Q + ++ + +G  PD   Y+  +D +C    + +A  +F+ M + G    
Sbjct: 513 LCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI--- 569

Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
            P    Y  ++    +  R++E  SL   M+  G  P    Y  +++G+ +AG+   A  
Sbjct: 570 EPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKV 629

Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
              EM   G   +  TYN  L+    N+  DEA+ L+  +  +     + T N +I+  F
Sbjct: 630 KFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 689

Query: 389 ELGEPDGAFETWHEMDKRG 407
           +    + A + +  + + G
Sbjct: 690 QTRRVEEAKDLFASISRSG 708


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 140/304 (46%), Gaps = 24/304 (7%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQ 220
           I   + E +++  +P I   N LLD+  K G  D    + K ++ +              
Sbjct: 188 ICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGS------------ 235

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
                   G  P++ TYN  I    +   + EAA+L E MR         ++ TY  +I 
Sbjct: 236 --------GCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLS----KKASSFTYNPLIT 283

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L+    +++ + L   M N G +P V TY  ++ G+  +G VE A     EM   G  P
Sbjct: 284 GLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLP 343

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D++TYN  L   C   N  EAL L+G +   G  P+V TYN+ I  Y  LG+ + A    
Sbjct: 344 DVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILK 403

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            EM ++GC  +V TY +++ G  +   +  A    +E+++KGL+     +++ +    ++
Sbjct: 404 EEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELIL 463

Query: 461 GDLG 464
           GD+ 
Sbjct: 464 GDIA 467



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 16/286 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNILGMQTL----------- 222
           P +   N+ +D  C+ G ++ A  + + +  +   PN  TY IL   +L           
Sbjct: 378 PTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREF 437

Query: 223 -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            +EM+  G  PD F YNT I        +  A +L E +  +G  ISS T  TY I+I  
Sbjct: 438 FDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEG--ISSDTV-TYNILIHG 494

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +   +++   L   M+++G  PD  TY  ++   C  G + EA K    M + G  P 
Sbjct: 495 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPS 554

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
            VT+   +   C   N   A   + +M+E G  P+  TYN+LI     +G    A   +H
Sbjct: 555 AVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFH 614

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
           EM +RG   +  TY ++IDG       E+A     E+   G+   Y
Sbjct: 615 EMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDY 660



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 16/255 (6%)

Query: 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYN-------ILG-----MQTLEEMIQMG 229
           L+  +L  C L    E   + +   ++P+   YN       ILG     ++  E ++  G
Sbjct: 421 LMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEG 480

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            + D  TYN  I   CK   + +A +L   M + G     P   TY  +I A  +   + 
Sbjct: 481 ISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGL---QPDCITYTCLIHAHCERGLLR 537

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E   +  +MI+ G LP   T+  ++   C  G +  AY +  +M  +G  P+ +TYN  +
Sbjct: 538 EARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLI 597

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
             LC       A   +  M+E G   +  TY +LI    ++G  + A   + EM + G  
Sbjct: 598 HALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIH 657

Query: 410 QDVDTYCVMIDGLFD 424
            D  T+  ++ G FD
Sbjct: 658 PDYLTHKALVKG-FD 671



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
             EM + G  PD+   N  L+ L D    D+   ++  M+++G  PS+ TYN L+  + +
Sbjct: 157 FREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLK 216

Query: 390 LGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447
            G  D       EM+ R  GC  +  TY V+I GL     +EEA  L+E     G++L  
Sbjct: 217 EGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVE-----GMRLS- 270

Query: 448 RKFDSYLMQLSVIGDL--GAIHKLSD 471
           +K  S+     + G L  G + K+ D
Sbjct: 271 KKASSFTYNPLITGLLARGCVKKVYD 296



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 245 CKAR---MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
           CKAR   + T +       R   S   +P  K    ++ AL    R ++  ++   M+  
Sbjct: 139 CKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQL 198

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--PDIVTYNCFLKVLCDNKNGD 359
           G  P + TY  +L+     G+ ++    L+EM  +G    P+ VTYN  +  L    + +
Sbjct: 199 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 258

Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
           EA  L   M  +    S  TYN LI+     G     ++   EM+  G    V TY  MI
Sbjct: 259 EAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 317

Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
            GL     VE A     E+   GL      ++S L      G+L
Sbjct: 318 HGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNL 361


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 16/293 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQ 220
            P++   N+L+DA CK G V  A+  +   +K  +KP+  TYN L               
Sbjct: 277 NPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKS 336

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            L  M   G      +YN  I+ FCK +MV +A  LF+ M  K      P   TY  +I 
Sbjct: 337 ILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIF---PNVITYNSLID 393

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L ++ R+     L+  M + G  PD+ TY  +L+ +C    V++A   L ++ ++G  P
Sbjct: 394 GLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRP 453

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY   +  LC     ++A  ++  ++  G   +V TY ++I  +   G  D A    
Sbjct: 454 NMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLL 513

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
            +M    C  D  TY ++I  LFD  + ++A  LL E++ +GL   + ++ S+
Sbjct: 514 SKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSW 566



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 16/287 (5%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------ 217
           Y+E +  +    I   + L+   C  G L D      K     + P+  T+NIL      
Sbjct: 233 YSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCK 292

Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                     L  M++ G  PD  TYN+ +D +C    V  A  +   M  +G T    T
Sbjct: 293 EGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVT---AT 349

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
            ++Y I+I    +   +++   L   M +    P+V TY  +++G+C +G++  A + ++
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELID 409

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M ++G  PDI+TY+  L  LC N   D+A+ L  ++ + G  P++ TY +LI    + G
Sbjct: 410 LMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGG 469

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             + A   + ++  +G    V+TY VMI G       +EA  LL ++
Sbjct: 470 RLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKM 516



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 16/275 (5%)

Query: 183 LLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMG 229
           L++ LCK G    A  + +RV  K V+ +   Y+ +                  EM+   
Sbjct: 181 LINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRR 240

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            + +  TY+  I  FC    + +A  LF  M ++     +P   T+ I++ A  +  R++
Sbjct: 241 ISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENI---NPDVYTFNILVDAFCKEGRVK 297

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
           E  + L  M+  G  PD+ TY  +++G CL  +V  A   L  M ++G    + +YN  +
Sbjct: 298 EAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVI 357

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C  K  D+A++L+  M     +P+V TYN LI    + G    A E    M  RG  
Sbjct: 358 NGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQ 417

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            D+ TY  ++D L     V++A  LL ++ ++G++
Sbjct: 418 PDIITYSSILDALCKNHLVDKAIALLIKLKDQGIR 452



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 127/281 (45%), Gaps = 16/281 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
           +P     N+L++  C+ GL+ +A ++  ++ K   +P+  T N               + 
Sbjct: 102 KPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALN 161

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             ++++ +G   D  +Y T I+  CK   V E     E +R     +       Y+ +I 
Sbjct: 162 FHDKLVALGFHLDQVSYGTLINGLCK---VGETRAALELLRRVDGKLVQLDVVMYSTIID 218

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           ++ ++  + + F L   M++     ++ TY  ++ G C+ GK+++A     +M ++   P
Sbjct: 219 SMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINP 278

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+ T+N  +   C      EA      M++ G  P + TYN L+  Y  + E + A    
Sbjct: 279 DVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSIL 338

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
           + M  RG    V +Y ++I+G      V++A  L +E+ +K
Sbjct: 339 NTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHK 379



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 3/221 (1%)

Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
           TF     V +A  LF  +  +  T   P    +  ++ +LV++       SL   M   G
Sbjct: 44  TFHNNNDVVDAVSLFNCLLRQNPT---PPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRG 100

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
             P+   +  ++   C  G +  A+  L ++   GY PD +T N F+K  C      +AL
Sbjct: 101 IKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQAL 160

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
             + +++ +G      +Y  LI+   ++GE   A E    +D +    DV  Y  +ID +
Sbjct: 161 NFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSM 220

Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
                V +A  L  E+V++ +      + + +    ++G L
Sbjct: 221 CKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKL 261



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 102/266 (38%), Gaps = 61/266 (22%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           QP+I   + +LDALCK  LVD A  +  ++K++ ++PN  TY IL               
Sbjct: 417 QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARN 476

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E+++  G+     TY   I  FC   +  EA  L   M+        P A TY I+I 
Sbjct: 477 IFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCI---PDAITYEIIIC 533

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTY------------------------------ 310
           +L   D  ++   LL  MI  G L     Y                              
Sbjct: 534 SLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGN 593

Query: 311 --KEVLEGM---CLAGKVEEAYKFLE----------EMGNKGYPPDIVTYNCFLKVLCDN 355
             K +LE +   C+  K     K +E          +   +GY  D+ TY   ++  C +
Sbjct: 594 WAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSH 653

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYN 381
              DE+L L  +M   GC P   TY+
Sbjct: 654 GLFDESLALLSKMEVNGCIPDAVTYD 679


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 128/289 (44%), Gaps = 16/289 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-----------GMQTL 222
           P     + L   L   G+V+ A +   K  + +V P   + N L           G++  
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 223 -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
            ++MI  G  P  FTYN  ID  CK   V  A  LFE M+ +G     P   TY  MI  
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLI---PDTVTYNSMIDG 139

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +  R+++       M +  C PDV TY  ++   C  GK+ +  +F  EM   G  P+
Sbjct: 140 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPN 199

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           +V+Y+  +   C      +A++ Y  M  VG  P+  TY  LI  Y ++G    AF   +
Sbjct: 200 VVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLAN 259

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
           EM + G   +V TY  +IDGL       E   LL+E+V   +K+    F
Sbjct: 260 EMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTF 308



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 21/300 (7%)

Query: 175 PEINALNLLLDALCKCGLVDYAETIC--KRVKNKV-KPNANTYNIL------------GM 219
           P+    N ++D   K G +D  +T+C  + +K+   +P+  TYN L            G+
Sbjct: 128 PDTVTYNSMIDGFGKVGRLD--DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGL 185

Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
           +   EM + G  P+  +Y+T +D FCK  M+ +A   +  MR  G     P   TY  +I
Sbjct: 186 EFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV---PNEYTYTSLI 242

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
            A  +   + + F L   M+  G   +V TY  +++G+C      E    L+EM      
Sbjct: 243 DAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIK 302

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             +VT+   +  LC NK   +A+  +GR+  + G   +   Y  +I    +  + + A  
Sbjct: 303 VTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATT 362

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
            + +M ++G   D   Y  ++DG F    V EA  L +++V  G+KL    + S +  LS
Sbjct: 363 LFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLS 422



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 90/241 (37%), Gaps = 50/241 (20%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKP 209
            F    ++   +K Y +  +V   P       L+DA CK G L D      + ++  V+ 
Sbjct: 209 AFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEW 268

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           N  TY  L            G+  L+EM+++       T+   ID  CK ++V++A D F
Sbjct: 269 NVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYF 328

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
              R          A  Y  MI  L + +++E   +L   M   G +PD + Y  +++G 
Sbjct: 329 G--RISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGN 386

Query: 318 CLAGKV-----------------------------------EEAYKFLEEMGNKGYPPDI 342
              G V                                   ++A  FLEEM  +G  PD 
Sbjct: 387 FKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 446

Query: 343 V 343
           V
Sbjct: 447 V 447



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 57/136 (41%)

Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
           C+P    +  +   +   G VEEA +   +M      P   + N  L         D   
Sbjct: 21  CVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVK 80

Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
           R +  MI  G  P+V TYN++I    + G+ + A   + EM  RG   D  TY  MIDG 
Sbjct: 81  RFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGF 140

Query: 423 FDCSKVEEACFLLEEV 438
               ++++     EE+
Sbjct: 141 GKVGRLDDTVCFFEEM 156


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 159/324 (49%), Gaps = 22/324 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM---- 219
           EK+ +K    ++ +  L+D LCK  LV  A  + KR+K++ + PN  TY+  I G+    
Sbjct: 185 EKMGIKRDVVVDTI--LIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSG 242

Query: 220 ------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L EM      P+  T++  ID + K   +++   +++ M         P   
Sbjct: 243 RLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSI---DPNVF 299

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ +I  L  ++R++E   +L  MI+ GC P+V TY  +  G   + +V++  K L++M
Sbjct: 300 TYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDM 359

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G   + V+ N  +K        D AL ++G M   G  P++++YN++++  F  GE 
Sbjct: 360 PQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEV 419

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A   +  M K     D+ TY +MI G+     V+EA  L  ++  K ++  ++ +   
Sbjct: 420 EKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIM 479

Query: 454 LMQLSVIGDLGAIHKLSDHMRKFY 477
           + +L+  G    +   +D + +FY
Sbjct: 480 IAELNRAG----MRTEADALNRFY 499



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 157/339 (46%), Gaps = 22/339 (6%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTY 214
           DV++ + K+      ++  P++   N+L++  C+C     A + + K +K  ++P+  T 
Sbjct: 102 DVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTA 161

Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           + L             +    +M +MG   D       IDT CK R+V  A ++ + M+ 
Sbjct: 162 SSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKD 221

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           +G    SP   TY+ +I  L ++ R+ +    L  M +    P+V T+  +++     GK
Sbjct: 222 RGI---SPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGK 278

Query: 323 ---VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
              V+  YK + +M      P++ TY+  +  LC +   DEA+++   MI  GC P+V T
Sbjct: 279 LSKVDSVYKMMIQMS---IDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVT 335

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           Y+ L + +F+    D   +   +M +RG A +  +   +I G F   K++ A  +   + 
Sbjct: 336 YSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMT 395

Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478
           + GL    R ++  L  L   G++       +HM+K  N
Sbjct: 396 SNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRN 434



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%)

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
           P    +N  +    K +M     +L++ +        SP   T  I++    +  +    
Sbjct: 83  PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 142

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
            S LG M+  G  PD+ T   ++ G CL+  +++A     +M   G   D+V     +  
Sbjct: 143 LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 202

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
           LC N+    AL +  RM + G  P+V TY+ LI+   + G    A    HEMD +    +
Sbjct: 203 LCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPN 262

Query: 412 VDTYCVMIDG 421
           V T+  +ID 
Sbjct: 263 VITFSALIDA 272



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
           Y+EVL       K ++A+     M    YP P IV +N  L  +   +  D  + L+ R+
Sbjct: 53  YREVLRSGLHNIKFDDAFHLFVLMA-YSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRI 111

Query: 369 -----IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
                IE+   P + T N+L++ +    +P  A     +M K G   D+ T   +++G  
Sbjct: 112 ENAEGIEIS--PDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFC 169

Query: 424 DCSKVEEACFLLEEVVNKGLK 444
             + +++A ++  ++   G+K
Sbjct: 170 LSNSIKDAVYVAGQMEKMGIK 190


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 159/324 (49%), Gaps = 22/324 (6%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM---- 219
           EK+ +K    ++ +  L+D LCK  LV  A  + KR+K++ + PN  TY+  I G+    
Sbjct: 40  EKMGIKRDVVVDTI--LIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSG 97

Query: 220 ------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
                 + L EM      P+  T++  ID + K   +++   +++ M         P   
Sbjct: 98  RLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSI---DPNVF 154

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ +I  L  ++R++E   +L  MI+ GC P+V TY  +  G   + +V++  K L++M
Sbjct: 155 TYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDM 214

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
             +G   + V+ N  +K        D AL ++G M   G  P++++YN++++  F  GE 
Sbjct: 215 PQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEV 274

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
           + A   +  M K     D+ TY +MI G+     V+EA  L  ++  K ++  ++ +   
Sbjct: 275 EKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIM 334

Query: 454 LMQLSVIGDLGAIHKLSDHMRKFY 477
           + +L+  G    +   +D + +FY
Sbjct: 335 IAELNRAG----MRTEADALNRFY 354



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 9/258 (3%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +M +MG   D       IDT CK R+V  A ++ + M+ +G    SP   TY+ +I  L 
Sbjct: 38  QMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGI---SPNVVTYSSLITGLC 94

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK---VEEAYKFLEEMGNKGYPP 340
           ++ R+ +    L  M +    P+V T+  +++     GK   V+  YK + +M      P
Sbjct: 95  KSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMS---IDP 151

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           ++ TY+  +  LC +   DEA+++   MI  GC P+V TY+ L + +F+    D   +  
Sbjct: 152 NVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLL 211

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
            +M +RG A +  +   +I G F   K++ A  +   + + GL    R ++  L  L   
Sbjct: 212 DDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFAN 271

Query: 461 GDLGAIHKLSDHMRKFYN 478
           G++       +HM+K  N
Sbjct: 272 GEVEKALSRFEHMQKTRN 289



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%)

Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
           M+  G  PD+ T   ++ G CL+  +++A     +M   G   D+V     +  LC N+ 
Sbjct: 4   MMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRL 63

Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
              AL +  RM + G  P+V TY+ LI+   + G    A    HEMD +    +V T+  
Sbjct: 64  VVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSA 123

Query: 418 MIDG 421
           +ID 
Sbjct: 124 LIDA 127



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%)

Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
           P   T + ++     ++ +++   + G M   G   DV     +++ +C    V  A + 
Sbjct: 11  PDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEV 70

Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
           L+ M ++G  P++VTY+  +  LC +    +A R    M      P+V T++ LI  Y +
Sbjct: 71  LKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAK 130

Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            G+       +  M +     +V TY  +I GL   ++V+EA  +L+ +++KG
Sbjct: 131 RGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 183


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 157/335 (46%), Gaps = 19/335 (5%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK----CGLVDYAETICKRVKNK 206
            +V +D   +  + + +  ++  +P +   N L+++L +      ++   + +   +K  
Sbjct: 149 AYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLG 208

Query: 207 VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           V PN N++NIL             +  + +M + G  PD  +YNT +D   K R++ EA 
Sbjct: 209 VVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEAR 268

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           DL   M++KG    SP   TY +++    +   ++E   ++  M  +  LP V TY  ++
Sbjct: 269 DLLLDMKSKGL---SPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLV 325

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
            G C  GK++EA++  +EM      PD+VTYN  +      ++  E   L   M + G  
Sbjct: 326 NGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVK 385

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
            +  TYN+++    + G    A  T  +M++ G + D  TY  +I       K+ +A  +
Sbjct: 386 CNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRM 445

Query: 435 LEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
           ++E+ +KGLK+     ++ L  L V   L   + L
Sbjct: 446 MDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNL 480



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 139/308 (45%), Gaps = 45/308 (14%)

Query: 181 NLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
           N++L  +CK G + +   T+ K  +N + P+  TYN L              + ++EM  
Sbjct: 392 NIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTS 451

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------------------ 269
            G   D +T NT +   C  + + EA +L      +G  +                    
Sbjct: 452 KGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDR 511

Query: 270 --------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
                         P+  TY  +I  L Q+ ++++    L  M+ +G +PD +TY  ++ 
Sbjct: 512 ALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIH 571

Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G CL G VE+A++F  EM    + PD+ T N  L+ LC     ++AL+L+  ++  G   
Sbjct: 572 GFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDI 631

Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
            V TYN +IS   + G+ + A++   EM+ +    D  TY V+I  L D  +++EA    
Sbjct: 632 DVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFT 691

Query: 436 EEVVNKGL 443
            ++V  G+
Sbjct: 692 LKMVESGI 699



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 166/388 (42%), Gaps = 27/388 (6%)

Query: 75  LGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEP--LAYNLMIDILSSTKYKA 132
           LGV   T+S   ++  +  E K+      W      +   P  ++YN ++D L   +   
Sbjct: 207 LGVVPNTNSFNILIYGYCLESKVK-DALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQ 265

Query: 133 KQFRLVCSM----LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ----PEINALNLLL 184
           +   L+  M    L   K    + V     L +LK+ T+ I++ T+    P +   N+L+
Sbjct: 266 EARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLV 325

Query: 185 DALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHA 231
           +  C  G +D A  I   + K  V P+  TYN L                +EEM + G  
Sbjct: 326 NGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVK 385

Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEEC 291
            +  TYN  +   CK   +TEA    + M   G    SP   TY  +I A  +  +M + 
Sbjct: 386 CNAVTYNIILKWMCKKGNMTEATTTLDKMEENGL---SPDCVTYNTLIGAYCKAGKMGKA 442

Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
           F ++  M + G   D  T   +L  +C+  K++EAY  L     +GY  D V+Y   +  
Sbjct: 443 FRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILG 502

Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
              ++ GD AL L+  M E    PS  TYN +I    +  + D A +  +EM + G   D
Sbjct: 503 YFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPD 562

Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVV 439
             TY ++I G      VE+A     E++
Sbjct: 563 ETTYNIIIHGFCLEGNVEKAFQFHNEMI 590



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 3/258 (1%)

Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
           +L  Q L++ I++G  P+  ++N  I  +C    V +A D    M   G     P   +Y
Sbjct: 195 LLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCV---PDTVSY 251

Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
             ++ AL++   ++E   LL  M + G  P+  TY  ++ G C  G ++EA K +E M  
Sbjct: 252 NTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTR 311

Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
               P + TYN  +   C++   DEA R+   M ++   P V TYN LI    +  +   
Sbjct: 312 NNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSE 371

Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
            +    EMDK+G   +  TY +++  +     + EA   L+++   GL      +++ + 
Sbjct: 372 VYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIG 431

Query: 456 QLSVIGDLGAIHKLSDHM 473
                G +G   ++ D M
Sbjct: 432 AYCKAGKMGKAFRMMDEM 449



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 99/246 (40%), Gaps = 16/246 (6%)

Query: 179 ALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEM 225
            LN +L  LC    +D A   +C   K     +  +Y IL             +   +EM
Sbjct: 460 TLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEM 519

Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
            +    P   TYN+ I   C++R V +A D    M   G     P   TY I+I      
Sbjct: 520 KERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLV---PDETTYNIIIHGFCLE 576

Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
             +E+ F     MI +   PDV T   +L G+C  G +E+A K    + +KG   D+VTY
Sbjct: 577 GNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTY 636

Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
           N  +  LC     + A  L   M      P   TY ++I+   + G    A E   +M +
Sbjct: 637 NTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVE 696

Query: 406 RGCAQD 411
            G   D
Sbjct: 697 SGIVHD 702


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 143/294 (48%), Gaps = 16/294 (5%)

Query: 181  NLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQ 227
            N L+  L    L+D AE +   +K     P+  TYN+L             ++  EEM +
Sbjct: 759  NSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHR 818

Query: 228  MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
             G+     TYNT I    K+R + +A DL+  + ++G    SPT  TY  ++  L++  R
Sbjct: 819  KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGF---SPTPCTYGPLLDGLLKAGR 875

Query: 288  MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
            +E+  +L   M+  GC  + + Y  +L G  +AG  E+     ++M ++G  PDI +Y  
Sbjct: 876  IEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTI 935

Query: 348  FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
             +  LC     ++ L  + +++E+G  P + TYN+LI    +    + A   ++EM K+G
Sbjct: 936  IIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKG 995

Query: 408  CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
               ++ TY  +I  L    K  EA  + EE++ KG K     +++ +   SV G
Sbjct: 996  IVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSG 1049



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 3/250 (1%)

Query: 224  EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            EM ++G  PD FTYN  +D   K+  + E   + E M  KG      T  TY  +I  LV
Sbjct: 780  EMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGY---ESTYVTYNTIISGLV 836

Query: 284  QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            ++ R+E+   L  ++++ G  P   TY  +L+G+  AG++E+A     EM   G   +  
Sbjct: 837  KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 896

Query: 344  TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
             YN  L       N ++   L+  M++ G  P +++Y ++I    + G+ +     + ++
Sbjct: 897  IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL 956

Query: 404  DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             + G   D+ TY ++IDGL    ++EEA  L  E+  KG+      ++S ++ L   G  
Sbjct: 957  LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKA 1016

Query: 464  GAIHKLSDHM 473
                K+ + +
Sbjct: 1017 AEAGKMYEEL 1026



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 16/214 (7%)

Query: 183  LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL--GMQT----------LEEMIQMG 229
            LLD L K G ++ AE +    ++   K N   YNIL  G +            ++M+  G
Sbjct: 866  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 925

Query: 230  HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
              PD  +Y   IDT CKA  + +    F  +   G     P   TY ++I  L ++ R+E
Sbjct: 926  INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGL---EPDLITYNLLIDGLGKSKRLE 982

Query: 290  ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            E  SL   M   G +P++ TY  ++  +  AGK  EA K  EE+  KG+ P++ TYN  +
Sbjct: 983  EAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALI 1042

Query: 350  KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
            +    + + D A   YGRMI  GC P+  TY  L
Sbjct: 1043 RGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 16/306 (5%)

Query: 181 NLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNI----LGMQ--------TLEEMIQ 227
           N +L+ +   G V D AE      +  VK N  T+      LG++         L  M +
Sbjct: 94  NYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKE 153

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G   + +TYN  +    K+    EA +++  M   G     P+ +TY++++VA  +   
Sbjct: 154 AGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVV---PSVRTYSVLMVAFGKRRD 210

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E    LL  M   G  P+V +Y   +  +  A + +EAY+ L +M N+G  PD++T+  
Sbjct: 211 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 270

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            ++VLCD     +A  ++ +M +    P   TY  L+  + + G+     E W+ M   G
Sbjct: 271 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 330

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
              +V  Y  +ID L    +V EA  + +E+  KG+      ++S +         G   
Sbjct: 331 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDAL 390

Query: 468 KLSDHM 473
           +L  HM
Sbjct: 391 ELFKHM 396



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 25/260 (9%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN 238
           A   ++DALC+ G V  A                      ++  +EM Q G  P+ ++YN
Sbjct: 337 AYTAVIDALCQVGRVFEA----------------------LEMFDEMKQKGIVPEQYSYN 374

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
           + I  F KA    +A +LF+ M   G     P   T+ + I    ++    +       M
Sbjct: 375 SLISGFLKADRFGDALELFKHMDIHGP---KPNGYTHVLFINYYGKSGESIKAIQRYELM 431

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
            + G +PDV     VL G+  +G++  A +   E+   G  PD +TY   +K        
Sbjct: 432 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 491

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           DEA++++  MIE  C P V   N LI   ++ G  D A+  ++++ +        TY  +
Sbjct: 492 DEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTL 551

Query: 419 IDGLFDCSKVEEACFLLEEV 438
           + GL    KV+E   LLEE+
Sbjct: 552 LAGLGREGKVKEVMHLLEEM 571



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 161/385 (41%), Gaps = 38/385 (9%)

Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVFVPVDVLLM 160
           +  NY    + YN ++D L           ++ SM       D    N  ++      L+
Sbjct: 572 YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYG-----LV 626

Query: 161 ILKQYTEKIKVKTQ------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT- 213
             ++Y E   +  Q      P+   L  +L +  K GL+  A  I K     ++P + T 
Sbjct: 627 KEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYF--LQPGSKTD 684

Query: 214 --------YNILGMQTLEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
                     IL    +E+ I+        G   D+F     I   CK +   EA +L +
Sbjct: 685 RSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVK 744

Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
             ++ G ++ +     Y  +I  LV  + ++    L   M   GC PD  TY  +L+ M 
Sbjct: 745 KFKSFGVSLKT---GLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMG 801

Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
            + ++EE  K  EEM  KGY    VTYN  +  L  ++  ++A+ LY  ++  G  P+  
Sbjct: 802 KSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPC 861

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TY  L+    + G  + A   ++EM + GC  +   Y ++++G       E+ C L +++
Sbjct: 862 TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 921

Query: 439 VNKGLKLPYRKFDSYLMQLSVIGDL 463
           V++G+    + +   +  L   G L
Sbjct: 922 VDQGINPDIKSYTIIIDTLCKAGQL 946



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 217 LGM--QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
           LGM  +   E+  MG +PD  TY   I    KA    EA  +F  M         P    
Sbjct: 456 LGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCV---PDVLA 512

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
              +I  L +  R +E + +   +      P   TY  +L G+   GKV+E    LEEM 
Sbjct: 513 VNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMY 572

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +  YPP+++TYN  L  LC N   ++AL +   M   GC P + +YN +I    +    +
Sbjct: 573 HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYN 632

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            AF  + +M K+    D  T C ++        ++EA  ++++
Sbjct: 633 EAFSIFCQM-KKVLIPDYATLCTILPSFVKIGLMKEALHIIKD 674



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 16/313 (5%)

Query: 174 QPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P++    +L+  LC  G + D  +   K  K+  KP+  TY  L             M+
Sbjct: 262 KPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVME 321

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M   G+  +   Y   ID  C+   V EA ++F+ M+ KG     P   +Y  +I 
Sbjct: 322 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIV---PEQYSYNSLIS 378

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             ++ DR  +   L  HM   G  P+  T+   +     +G+  +A +  E M +KG  P
Sbjct: 379 GFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP 438

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+V  N  L  L  +     A R++  +  +G  P   TY M+I    +  + D A + +
Sbjct: 439 DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIF 498

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           ++M +  C  DV     +ID L+   + +EA  +  ++    L+     +++ L  L   
Sbjct: 499 YDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 558

Query: 461 GDLGAIHKLSDHM 473
           G +  +  L + M
Sbjct: 559 GKVKEVMHLLEEM 571



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 15/247 (6%)

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           NA TYN L             ++    M+  G  P   TY+  +  F K R V     L 
Sbjct: 159 NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLL 218

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M   G     P   +Y I I  L Q  R +E + +L  M N GC PDV T+  +++ +
Sbjct: 219 REMEAHGV---KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 275

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
           C AG++ +A     +M      PD VTY   L    DN +    + ++  M   G   +V
Sbjct: 276 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 335

Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
             Y  +I    ++G    A E + EM ++G   +  +Y  +I G     +  +A  L + 
Sbjct: 336 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKH 395

Query: 438 VVNKGLK 444
           +   G K
Sbjct: 396 MDIHGPK 402


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 181/433 (41%), Gaps = 55/433 (12%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMI---------DILSSTKYKAKQFRLVCSMLDYMKRN 148
           A + F +  +   + H PL Y++MI         D L    ++ K  R+ CS   ++   
Sbjct: 56  ALQHFQYLTNTLAFKHTPLTYHVMIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVL 115

Query: 149 NKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC--KCGLVDYAETICKRVKNK 206
           N  +    +    LK +    +   +P +   N LLDAL             + + ++ +
Sbjct: 116 NS-YKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGE 174

Query: 207 -VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
            ++PN  TYN+L              + L EM + G  PD  +Y T +   C+   V EA
Sbjct: 175 GMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEA 234

Query: 254 -----------------------------ADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
                                         ++F  M         P   +Y+ +I  L  
Sbjct: 235 REVARRFGAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSD 294

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
              +E   ++LG MI  GC P+V T+  +++G  L G+V E       M  +G  P++V 
Sbjct: 295 VGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVV 354

Query: 345 YNCFLKVLCDNKNGDEALRLYGRM-IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           YN  L  LC + N  EA+ + GRM  +  C P+V TY+ L+  + + G+  GA E W++M
Sbjct: 355 YNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKM 414

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
              G   +V  Y  M+D L   S  ++A  L++ +   G       F++++  L   G +
Sbjct: 415 VNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRV 474

Query: 464 GAIHKLSDHMRKF 476
               ++ D M+++
Sbjct: 475 LWAMRVVDQMQRY 487



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 17/299 (5%)

Query: 177 INALNLLLDALCKCGLVDYAETIC-KRVKNKVKPNANTYNI------------LGMQTLE 223
           ++  N L+  LC+ G V     +  + V N V PN  +Y+             L +  L 
Sbjct: 247 VSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLG 306

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           +MI+ G  P+  T+++ +  +     V E   L+  M  +G     P    Y  ++  L 
Sbjct: 307 KMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGV---RPNVVVYNTLLNGLC 363

Query: 284 QNDRMEECFSLLGHM-INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +  + E   + G M  +  C P+V+TY  ++ G   AG ++ A +   +M N G  P++
Sbjct: 364 CSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNV 423

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           V Y   + VLC N   D+A RL   M   GC P+V T+N  I      G    A     +
Sbjct: 424 VVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQ 483

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           M + GC  D  TY  ++DGLF  ++++EAC L+ E+  + ++L    +++ +   S  G
Sbjct: 484 MQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHG 542



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 144/320 (45%), Gaps = 21/320 (6%)

Query: 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKV--KPNANTYNIL------------G 218
            +P +   N LL+ LC  G +  A  +C R++     +PN  TY+ L             
Sbjct: 348 VRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGA 407

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
            +   +M+  G  P+   Y + +D  CK  M  +A  L + M T G     PT  T+   
Sbjct: 408 SEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGC---PPTVVTFNTF 464

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L    R+     ++  M   GCLPD  TY E+L+G+    +++EA + + E+  +  
Sbjct: 465 IKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKV 524

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
             ++VTYN  +     +   +  L++ GRM+  G  P   T N++I  Y +LG+   A +
Sbjct: 525 ELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQ 584

Query: 399 TWHEM--DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
               +   K  C  D+  +  ++ G+ +   +EEA   L +++NKG+      +D  +  
Sbjct: 585 FLDRITAGKELCP-DIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRG 643

Query: 457 -LSVIGDLGAIHKLSDHMRK 475
               +G +G I  L D + K
Sbjct: 644 FFKKLGHMGPIRILDDILGK 663



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 15/291 (5%)

Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL-------- 217
           E +     P + + + ++  L   G V+ A   + K ++   +PN +T++ L        
Sbjct: 272 EMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGG 331

Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
               G+     M+  G  P+   YNT ++  C +  + EA D+    R +      P   
Sbjct: 332 RVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCG--RMEKDCFCRPNVT 389

Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
           TY+ ++   V+   ++    +   M+N G  P+V  Y  +++ +C     ++AY+ ++ M
Sbjct: 390 TYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNM 449

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G PP +VT+N F+K LC       A+R+  +M   GC P  +TYN L+   F + E 
Sbjct: 450 ATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNEL 509

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             A E   E+++R    ++ TY  ++ G     K E    +L  ++  G+K
Sbjct: 510 KEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVK 560



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 17/239 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYN-------- 215
           + + +    +P +     ++D LCK  + D A   I     +   P   T+N        
Sbjct: 411 WNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCC 470

Query: 216 ----ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
               +  M+ +++M + G  PD  TYN  +D       + EA +L   +  +   ++   
Sbjct: 471 GGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELN--- 527

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  ++     + + E    +LG M+ +G  PD  T   V+      GKV  A +FL+
Sbjct: 528 LVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLD 587

Query: 332 EM-GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
            +   K   PDI+ +   L  +C++   +EA+    +M+  G +P++ T+++L+  +F+
Sbjct: 588 RITAGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRGFFK 646


>gi|224107773|ref|XP_002333469.1| predicted protein [Populus trichocarpa]
 gi|222836989|gb|EEE75382.1| predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 188/469 (40%), Gaps = 65/469 (13%)

Query: 46   DSVSDVAKLYEA--------IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKI 97
            +SV  ++K Y+         I+ +   +  ++ AL+   +  T + V   L+        
Sbjct: 619  NSVKPLSKAYDEQDLQEVLRILSSLEDWPIIQDALEKCTIQFTPELVAETLRNCGMHGNA 678

Query: 98   AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157
            A  FF W G Q+ +      YN+ + +      + K F+ + S+   M+R     +P D 
Sbjct: 679  ALHFFAWVGKQNGFCQTTETYNMAMKVSG----RGKDFKHMRSLFYEMRRRG-FLIPPDT 733

Query: 158  LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNI 216
              +++ QY                       + GL + A  I   +K +   PN +TY  
Sbjct: 734  WAIMIMQYG----------------------RTGLTEIALKIFGEMKASGCNPNDSTYKY 771

Query: 217  L--------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
            L               ++   EMI+ GH PD     T +   C+   + EA    + +  
Sbjct: 772  LIIFLCGRKGRKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCK 831

Query: 263  KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
             G T+ +    +Y++ I AL +   +EE  SL+  +       D  T+  ++ G+   G+
Sbjct: 832  AGFTVPA----SYSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGR 887

Query: 323  VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
            +EEA   ++ M   G  P +  Y   +      K   +AL ++  M + GC P++ TY+ 
Sbjct: 888  LEEALAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSA 947

Query: 383  LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
            LI  Y +      A+  +H +  +G A D  TY + +  L    K EEA  LL ++V+ G
Sbjct: 948  LIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNG 1007

Query: 443  LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKR 491
            +      F +    L+  G            +     V+ ++ AL  KR
Sbjct: 1008 IVPSNVNFRTVFFGLNREGK-----------QSLAQTVLQKKWALTSKR 1045



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 181/439 (41%), Gaps = 97/439 (22%)

Query: 48  VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
           VS V      I+   N   +ME+ LD +G  L  + V  VL+R      +A+RFF W   
Sbjct: 137 VSAVVHEITGIVRAENCTASMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKT 196

Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT- 166
           +D + H    YN M+     T  +A++F +V  +L+ M++ +     +    ++++QY  
Sbjct: 197 KDGFCHTTKTYNTML----YTAGEAREFSVVDVLLEEMEKYS-CERDIKTWTILIRQYGK 251

Query: 167 -----------EKI-KVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANT 213
                      EK+ K   +P++    + L +LC  G  + A  I K  V+ +++PN + 
Sbjct: 252 AKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSL 311

Query: 214 YNIL-----------GMQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
           Y +L            +Q++ ++MI++   P++  +   + ++C A  + EA +L   ++
Sbjct: 312 YKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLK 371

Query: 262 T--------------KGSTISSPTA-----------------KTYAIMIVALVQNDRMEE 290
                          KG + ++  A                 K Y I+I   ++ + + +
Sbjct: 372 NKEIQLDYEVSETLVKGLSRANRIADALEIVEIMKRKDFVDGKVYGIIINGYLRRNELSK 431

Query: 291 CFSLLGHMINSGCLPDVSTYKEVLEGM------------------------------CLA 320
              L   M   G LP  STY E+++ +                               +A
Sbjct: 432 ALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVA 491

Query: 321 GKVE-----EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
           G V      EA++  E M +KG  P   +Y+ F+K LC     DE +++ G+M     + 
Sbjct: 492 GHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKVSRTDEIIKVLGKMQASKMFI 551

Query: 376 SVQTYNMLISMYFELGEPD 394
             + +  +IS     GE D
Sbjct: 552 CDEIFEWVISCMERKGEMD 570



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 2/206 (0%)

Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
           A   F +++TK       T KTY  M+    +         LL  M    C  D+ T+  
Sbjct: 187 AYRFFNWVKTKDGFCH--TTKTYNTMLYTAGEAREFSVVDVLLEEMEKYSCERDIKTWTI 244

Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
           ++     A  + +A    E+M   G  PD+  Y   L  LCD   G+ AL +Y  M++  
Sbjct: 245 LIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYKEMVQRE 304

Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
             P++  Y ML++   + G+         +M +     + D +  ++       ++ EA 
Sbjct: 305 MEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVCVLKSYCVAGRIREAL 364

Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLS 458
            L+ ++ NK ++L Y   ++ +  LS
Sbjct: 365 ELIRDLKNKEIQLDYEVSETLVKGLS 390



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 3/201 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
           TYNT + T  +AR  +    L E M            KT+ I+I    +   + +   + 
Sbjct: 206 TYNTMLYTAGEAREFSVVDVLLEEMEKYSC---ERDIKTWTILIRQYGKAKLIGKALLVH 262

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M  SGC PDV  Y+  L  +C AGK E A +  +EM  +   P++  Y   L  L  +
Sbjct: 263 EKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKS 322

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
            +      +   MI V   P    +  ++  Y   G    A E   ++  +    D +  
Sbjct: 323 GDVSAVQSVADDMIRVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVS 382

Query: 416 CVMIDGLFDCSKVEEACFLLE 436
             ++ GL   +++ +A  ++E
Sbjct: 383 ETLVKGLSRANRIADALEIVE 403



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
           AY+F   +  K G+     TYN  L    + +       L   M +  C   ++T+ +LI
Sbjct: 187 AYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREFSVVDVLLEEMEKYSCERDIKTWTILI 246

Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
             Y +      A     +M K GC  DV+ Y V +  L D  K E A  + +E+V + ++
Sbjct: 247 RQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYKEMVQREME 306

Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
                +   L  L+  GD+ A+  ++D M
Sbjct: 307 PNLSLYKMLLNCLAKSGDVSAVQSVADDM 335


>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 16/302 (5%)

Query: 156 DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTY 214
           D L + L  + +  +   +P +   N L+++LC    ++ +  + + +K + V+P   TY
Sbjct: 446 DQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESRELLREMKESGVEPTHFTY 505

Query: 215 N-----------ILG-MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
           N           +LG +  L+ M   GH P        +   C   M  EA +  + M  
Sbjct: 506 NSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQ 565

Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
           +G     P   +Y+  I  L+Q   +     L   + + G  PDV     ++ G+C A +
Sbjct: 566 QGFL---PDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYR 622

Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
           V EA K L+E+  KG+ P +VTYN  +   C N + D+A+ L  RM      P+V TY+ 
Sbjct: 623 VREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYST 682

Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
           L+  +     PD A   W+EM+++GC  +   +  +I GL  C +   A   L E+  K 
Sbjct: 683 LVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKD 742

Query: 443 LK 444
           +K
Sbjct: 743 MK 744



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 147/385 (38%), Gaps = 48/385 (12%)

Query: 21  IRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLT 80
           +R   L S   K+P       + ++ S + VA +  ++       D  E  L+     LT
Sbjct: 11  LRPLPLFSVFSKLPLSTTPHNNNNNHSDASVADILVSVFTEQPNADTPE--LNCFAPILT 68

Query: 81  TDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCS 140
              V  VL R +   K+A  FF WA +Q  + H    YN +  ILS +   +        
Sbjct: 69  PPLVESVLTRLR-TWKLAHSFFHWASNQ-GFRHTCYTYNSIASILSRSHQTSP------- 119

Query: 141 MLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
                            L  +LKQ ++       P   AL  L+  L   GL   A  + 
Sbjct: 120 -----------------LKTLLKQISDSAPCSFTP--GALGFLIRCLGHAGLAREAHHLF 160

Query: 201 K--RVKNKVKPNANTYNILGMQ------------TLEEMIQMGHAPDNFTYNTAIDTFCK 246
              R+K    PN   YN L                LEEM   G   D FT    +  +C 
Sbjct: 161 DEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGFGWEFDKFTLTPLLQAYCN 220

Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
           AR   EA  ++  MR KG           +++ ++  +   +++ F L+  M   G   +
Sbjct: 221 ARRFDEALRVYNVMREKGWV----DGHVCSMLALSFSKWGDVDKAFELVERMEGHGMRLN 276

Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
             T+  ++ G    G+V+ A +  + M   G+ P +  ++  +  LC N +   AL L  
Sbjct: 277 EKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLS 336

Query: 367 RMIEVGCWPSVQTYNMLISMYFELG 391
            M E G  P V  +  LIS + + G
Sbjct: 337 EMKEFGVTPDVGIFTKLISAFPDRG 361



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 4/253 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L+ M+Q G  PD  +Y+ AI    + + +  A  LF  + ++G     P      I++  
Sbjct: 560 LDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHC---PDVVASNILMRG 616

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  R+ E   LL  ++  G  P V TY  +++  C  G V++A   L  M  +   P+
Sbjct: 617 LCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPN 676

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           ++TY+  +   C  +  D+AL ++  M   GC+P+   +  LI    +   P  A     
Sbjct: 677 VITYSTLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLR 736

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
           EM+++    D   Y  +I        +  A  + +E+V  G   P     +Y + +  I 
Sbjct: 737 EMEQKDMKPDSFIYIALISSFLSDMDLASAFEIFKEMVYSGY-FPESHDKNYSIVMDAID 795

Query: 462 DLGAIHKLSDHMR 474
                H+ S  ++
Sbjct: 796 KFSKDHRTSSGIQ 808



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 101/243 (41%), Gaps = 4/243 (1%)

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           +TYN+      ++   +    L +  +   S   S T      +I  L       E   L
Sbjct: 102 YTYNSIASILSRSHQTSPLKTLLK--QISDSAPCSFTPGALGFLIRCLGHAGLAREAHHL 159

Query: 295 LGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
              M   G C+P+   Y  +LE +  +G+V+     LEEM   G+  D  T    L+  C
Sbjct: 160 FDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGFGWEFDKFTLTPLLQAYC 219

Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
           + +  DEALR+Y  M E G W      +ML   + + G+ D AFE    M+  G   +  
Sbjct: 220 NARRFDEALRVYNVMREKG-WVDGHVCSMLALSFSKWGDVDKAFELVERMEGHGMRLNEK 278

Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           T+CV+I G     +V+ A  L + +   G   P   FD  +  L   GD      L   M
Sbjct: 279 TFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEM 338

Query: 474 RKF 476
           ++F
Sbjct: 339 KEF 341



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 60/334 (17%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--------GMQ 220
           +V   P ++  ++L+  LC+ G    A ++   +K   V P+   +  L         + 
Sbjct: 305 RVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKLISAFPDRGVIA 364

Query: 221 TLEEMIQMGHAPDNFT--YNTAIDTFCKARMVTEAADLFEFM-RTKGS------------ 265
            L E +  G         YN  +  +    ++ EA      M ++K S            
Sbjct: 365 KLLEEVPGGEEERTLVLIYNAVLTCYVNDGLMDEACRFLRMMIQSKASGDVQMDGFFNKV 424

Query: 266 -TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
             +  P   +++I+I  L++ND+++   SL   M      P V  Y  ++  +C + ++E
Sbjct: 425 KKLVFPNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLE 484

Query: 325 EAYKFLEEMGNKGYPPDIVTYNC-----------------------------------FL 349
           E+ + L EM   G  P   TYN                                     +
Sbjct: 485 ESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLV 544

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
           K LCD+    EA      M++ G  P + +Y+  I    ++ E + A + + ++  RG  
Sbjct: 545 KELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHC 604

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            DV    +++ GL    +V EA  LL+E+V KG 
Sbjct: 605 PDVVASNILMRGLCKAYRVREAEKLLDEIVVKGF 638


>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 376

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 3/227 (1%)

Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
           +  L  MI+ G  P+   YNT I+    A    +A  +F   R  G+   SPT  TY  +
Sbjct: 149 VSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF---REMGTMHCSPTIITYNTL 205

Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
           I  L +N+   E ++L+  +++ G  P V TY  +++G+CL  KVE A +   ++ +KG+
Sbjct: 206 INGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGF 265

Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
            PD+  +N  +  LC       AL LY  M    C P++ ++N L+  +++ G+   A  
Sbjct: 266 KPDVQMHNILIHGLCSVGEMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
            W  + + G   D+ +Y + + GL  C+++ +A   L + V K + L
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 3/209 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           E M + G   D+ T+   +  FCK   + ++  + E    KG  +    A  Y+ MI  L
Sbjct: 83  ELMKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEMAEQKGGVLD---AFAYSAMINGL 139

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +   +++  S+L  MI SGC P+   Y  ++ G+  A K E+A +   EMG     P I
Sbjct: 140 CKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTI 199

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +TYN  +  LC N+   EA  L   +++ G  P V TY+ML+       + + A + W++
Sbjct: 200 ITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQ 259

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
           +  +G   DV  + ++I GL    +++ A
Sbjct: 260 VTSKGFKPDVQMHNILIHGLCSVGEMQLA 288



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +E++    +PD+  YN  ++ + +   + +  +L+E M ++G+     +  ++ IM+  L
Sbjct: 14  KEIVLSKVSPDSVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR----SVSSFNIMMRGL 69

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
             N +++E  S+   M  SG + D  T+  ++ G C  G + ++   LE    KG   D 
Sbjct: 70  FDNGKVDEVISIWELMKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDA 129

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
             Y+  +  LC   N D+A+ +   MI+ GC P+   YN LI+      + + A   + E
Sbjct: 130 FAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE 189

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           M    C+  + TY  +I+GL       EA  L++E+++KGL
Sbjct: 190 MGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL 230



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
           C++ + D A R+Y  ++     P    YN +++ YF + +    FE W  M   G  + V
Sbjct: 1   CESGDIDGAERVYKEIVLSKVSPDSVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
            ++ +M+ GLFD  KV+E   + E +   G 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGF 90


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAA----DLFEFMRTKGSTISSPTAKTYAIMI 279
           ++   G  P   T+NT I+  CK   V EA      +F+F          P A TY  +I
Sbjct: 187 QIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDL-------CPDAFTYTSLI 239

Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
           +   +N ++++ F +   M+  GC P+  TY  ++ G+C  G++ EA   LEEM  KG  
Sbjct: 240 LGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIE 299

Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
           P + TY   +  LCD    D+A+ L   M + GC PSVQTY  +IS  F  G+ + A   
Sbjct: 300 PTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGM 359

Query: 400 WHEMDKRGCAQDVDTYCVMIDGL 422
           +H+M K G   +  TY  +I+ L
Sbjct: 360 YHKMLKEGLVPNTVTYNALINEL 382



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 178/425 (41%), Gaps = 82/425 (19%)

Query: 98  AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKY--KAKQFRLV----CSMLDYMKR---- 147
           A +FF W   +  Y H+   +  M++ L   K    A   R++    C   D +KR    
Sbjct: 87  ALQFFYWISKRHFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDF 146

Query: 148 -------NNKVF----VPVDVLLMILKQ----------YTEKIKVKTQPEINALNLLLDA 186
                  ++ +F       + LL+ L +          Y +      +P +   N +++ 
Sbjct: 147 LHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINI 206

Query: 187 LCKCGLVDYAETICKRV-KNKVKPNANTYN--ILG----------MQTLEEMIQMGHAPD 233
           LCK G V  A  +  ++ +  + P+A TY   ILG           +  + M++ G  P+
Sbjct: 207 LCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPN 266

Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
           + TY+T I+  C    + EA D+ E M  KG     PT  TY + I +L    R+++  +
Sbjct: 267 SVTYSTLINGLCNEGRIGEAMDMLEEMTEKGI---EPTVYTYTVPISSLCDIGRVDDAIN 323

Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
           L+  M   GC P V TY  ++ G+  AGK+E A     +M  +G  P+ VTYN  +  LC
Sbjct: 324 LVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELC 383

Query: 354 -DNKNG----------------------------------DEALRLYGRMIEVGCWPSVQ 378
            + + G                                  ++A+ ++ +M++ G  P+V 
Sbjct: 384 TEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVV 443

Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
           TYN LI    + G  + A    + M +  C  D  TYC +I G     K++ A     E+
Sbjct: 444 TYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEM 503

Query: 439 VNKGL 443
           +  G+
Sbjct: 504 LKCGI 508



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
           +++NT +    K  MVT A +++  + + G     P+  T+  MI  L +  +++E   +
Sbjct: 163 YSFNTLLLQLGKFDMVTSAQNVYAQIFSSGV---KPSLLTFNTMINILCKKGKVQEAVLV 219

Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
              +      PD  TY  ++ G C   K+++A++  + M   G  P+ VTY+  +  LC+
Sbjct: 220 FNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCN 279

Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
                EA+ +   M E G  P+V TY + IS   ++G  D A      M K+GC+  V T
Sbjct: 280 EGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQT 339

Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
           Y  +I GLF   K+E A  +  +++ +GL      +++ + +L   G  G   K+ D M
Sbjct: 340 YTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWM 398



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 138/356 (38%), Gaps = 83/356 (23%)

Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNI--- 216
           +L++ TEK     +P +    + + +LC  G VD A  + + +  K   P+  TY     
Sbjct: 289 MLEEMTEK---GIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIIS 345

Query: 217 ---------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
                    L +    +M++ G  P+  TYN  I+  C       A  +F++M   G+  
Sbjct: 346 GLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLA 405

Query: 268 S--------------------------------SPTAKTYAIMIVALVQNDRMEECFSLL 295
           +                                SPT  TY  +IV  ++   +      L
Sbjct: 406 NAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFL 465

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
             M  S C PD  TY E++ G C  GK++ A  F  EM   G  P+  TY   +   C  
Sbjct: 466 YMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKE 525

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLIS-----------------MYFELGEPDG--- 395
              D AL L+ RM E GC  S++TYN +IS                 M  +  +P+    
Sbjct: 526 GKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITY 585

Query: 396 ---------------AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
                          AF+ +HEM+K+ C  +  TY  +I GL    KV+ A  L E
Sbjct: 586 TSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTE 641



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 138/332 (41%), Gaps = 51/332 (15%)

Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQT 221
           P+      L+   C+   +D A E   + VK+   PN+ TY+ L             M  
Sbjct: 230 PDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDM 289

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           LEEM + G  P  +TY   I + C    V +A +L   M  KG    SP+ +TY  +I  
Sbjct: 290 LEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGC---SPSVQTYTAIISG 346

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  +ME    +   M+  G +P+  TY  ++  +C  G+   A K  + M   G   +
Sbjct: 347 LFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLAN 406

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI----------------- 384
             TYN  +K L    + ++A+ ++ +M++ G  P+V TYN LI                 
Sbjct: 407 AQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLY 466

Query: 385 -----------SMYFEL-------GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
                        Y EL       G+ D A   ++EM K G + +  TY  MIDG     
Sbjct: 467 MMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEG 526

Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
           K++ A  L E +   G       +++ +  LS
Sbjct: 527 KIDVALSLFERMEENGCSASIETYNAIISGLS 558



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
           EM++ G +P+ +TY   ID +CK   +  A  LFE M   G    S + +TY  +I  L 
Sbjct: 502 EMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGC---SASIETYNAIISGLS 558

Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
           + +R  E       M   G  P+  TY  ++ G+C       A+K   EM  K   P+  
Sbjct: 559 KGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAH 618

Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
           TY   +  LC     D A RL     E GC P++ TY+ L+S     G  + A +    M
Sbjct: 619 TYTSLIYGLCQEGKVDAAERL----TENGCEPTIDTYSTLVSGLCREGRSNEASQLVENM 674

Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
            ++G +  ++ YC ++       KV+ A  +   +  KG +
Sbjct: 675 KEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQ 715



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 115/272 (42%), Gaps = 20/272 (7%)

Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYN--ILGMQT 221
           + E +K    P       ++D  CK G +D A ++ +R++ N    +  TYN  I G+  
Sbjct: 500 FYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSK 559

Query: 222 ----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                       +M + G  P+  TY + I+  CK      A  +F  M  K      P 
Sbjct: 560 GNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCL---PN 616

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
           A TY  +I  L Q  +++        +  +GC P + TY  ++ G+C  G+  EA + +E
Sbjct: 617 AHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVE 672

Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
            M  KG  P +  Y   L   C +   D AL ++  M   G  P +  Y +LI     + 
Sbjct: 673 NMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVS 732

Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
             + A   +  + K+    D+  + V++DGL 
Sbjct: 733 RAEEALNIFQSLLKKQWNSDLIVWTVLVDGLL 764



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 12/232 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--------GMQTLEE 224
           QP       L++ LCK    + A  I   ++ K   PNA+TY  L         +   E 
Sbjct: 579 QPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER 638

Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
           + + G  P   TY+T +   C+     EA+ L E M+ KG    SP+ + Y  ++VA  +
Sbjct: 639 LTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGL---SPSMEIYCSLLVAHCK 695

Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
           + +++    +   M   G  P +  YK ++  +C   + EEA    + +  K +  D++ 
Sbjct: 696 SLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIV 755

Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
           +   +  L    + D  ++    M    C PS+ TY +L     ++G+  G 
Sbjct: 756 WTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKSIGT 807


>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 169/382 (44%), Gaps = 30/382 (7%)

Query: 88  LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM-IDILSSTKYKAKQFRLVCSMLDYMK 146
           L R Q +  +A + F+      +   +P  Y+L+  D++ S   +AK F  +  +L  +K
Sbjct: 83  LLRLQKDPTLALQLFLNPNPSSSEPPKPFRYSLLSYDLIISKLGRAKMFDEMEEILQQLK 142

Query: 147 RNNKVFVPVDVLLMILK-------------QYTEKI-KVKTQPEINALNLLLDALCKCGL 192
           +  + F P +V+   +              Q  E+I   + +  + ++N LL AL K   
Sbjct: 143 QETR-FAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKSVNSLLAALLKNRQ 201

Query: 193 VDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
           ++    +   + N   P+A T+NIL                 +EM + G  P+  T+ T 
Sbjct: 202 LEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTL 261

Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
           I        + EA  L E M  K   I  P A  Y  +I        +   F L   M+ 
Sbjct: 262 IYGLSLNSKLKEALRLKEDM-VKVYMIK-PNASIYTTLIKGFCGVGELNFAFKLKEEMVT 319

Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
           S      + Y  ++  +   G+ EE    L EMG  G  PD VTYN  +   C   + + 
Sbjct: 320 SNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLES 379

Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
           A R+   M+E GC P V ++N +I    + G+ D A +   +M +RGC  DV +Y ++ D
Sbjct: 380 AHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFD 439

Query: 421 GLFDCSKVEEACFLLEEVVNKG 442
           GL +  +++EA  +L+E++ KG
Sbjct: 440 GLCEMMQLKEATSILDEMIFKG 461



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 17/262 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P+    N+L+ A C CG +D    +   ++ + VKPN  T+  L             ++ 
Sbjct: 218 PDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRL 277

Query: 222 LEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
            E+M+++    P+   Y T I  FC    +  A  L E M T    + S     Y+ +I 
Sbjct: 278 KEDMVKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVS---AVYSTLIS 334

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
           AL ++ R EE   +L  M  +GC PD  TY  ++ G C    +E A++ ++EM  KG  P
Sbjct: 335 ALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKP 394

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+ ++N  +  LC     D+A+ L   M   GC P V +Y ++     E+ +   A    
Sbjct: 395 DVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSIL 454

Query: 401 HEMDKRGCAQDVDTYCVMIDGL 422
            EM  +G     ++   ++D L
Sbjct: 455 DEMIFKGYVPRNESINKLVDRL 476



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 131/310 (42%), Gaps = 47/310 (15%)

Query: 222 LEEMIQM-----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
           +EE++Q        AP    +   I  + +A +   A  +FE +    S     T K+  
Sbjct: 134 MEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERI---PSFRCKRTVKSVN 190

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
            ++ AL++N ++E+   +   + N G  PD  T+  ++   CL G ++  +   +EM  +
Sbjct: 191 SLLAALLKNRQLEKMTQVFVDISNYGS-PDACTFNILIHAACLCGDLDAVWGVFDEMQKR 249

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISMYFELGEPDG 395
           G  P++VT+   +  L  N    EALRL   M++V    P+   Y  LI  +  +GE + 
Sbjct: 250 GVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNF 309

Query: 396 AF-----------------------------------ETWHEMDKRGCAQDVDTYCVMID 420
           AF                                   +   EM + GC  D  TY  +I+
Sbjct: 310 AFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIIN 369

Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNP 479
           G    + +E A  +++E+V KG K     F++ +  L   G L  A+  L D  R+   P
Sbjct: 370 GHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPP 429

Query: 480 -VIARRLALN 488
            V++ R+  +
Sbjct: 430 DVLSYRIIFD 439



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L EM + G  PD  TYN  I+  CK   +  A  + + M  KG     P   ++  +I  
Sbjct: 349 LREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGC---KPDVFSFNTIIGW 405

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
           L +  ++++   LL  M   GC PDV +Y+ + +G+C   +++EA   L+EM  KGY P 
Sbjct: 406 LCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPR 465

Query: 342 IVTYNCFLKVLCDNKN 357
             + N  +  LC   N
Sbjct: 466 NESINKLVDRLCQECN 481


>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 176/403 (43%), Gaps = 38/403 (9%)

Query: 68  MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
           +E AL      +T D ++ VL+R + + K A  FF W            AYN ++DIL  
Sbjct: 67  IELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEILDILG- 125

Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI---------- 177
              K ++F  +  +LD M +   + V  +   +++ +Y    KV+   EI          
Sbjct: 126 ---KMRRFDELSQVLDIMSKREGL-VNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGLE 181

Query: 178 ---NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
               +   LL  LC+   V  AE++          +  T NI+              +  
Sbjct: 182 IDLVSFQNLLMFLCRYKHVQIAESLLYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKRFW 241

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
           +++I     PD FTY T I    K   +  A  ++  M  K      P       +I AL
Sbjct: 242 KDIIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQC---KPDVVICNCIIDAL 298

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--P 340
              +R+ E   +   M   GCLP+ +TY  +++      ++E+ Y+ L+EM +K     P
Sbjct: 299 CFKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMP 358

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D +T+N  LK L   K  +E   +  RM   GC  S  TYN+++ +Y +    +   +TW
Sbjct: 359 DHITFNYLLKAL---KKPEELPLVLERMERNGCMISTDTYNLILRLYADWDCEERVGDTW 415

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           +EM+K G   D  +Y +MI  L++  ++ +A     E+ +KG+
Sbjct: 416 NEMEKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGM 458



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 4/238 (1%)

Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
            YN  +D   K R   E + + + M  +   ++    +TY +++       ++EE   + 
Sbjct: 116 AYNEILDILGKMRRFDELSQVLDIMSKREGLVNE---ETYRVLVNRYAAAHKVEEAIEIF 172

Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
               + G   D+ +++ +L  +C    V+ A   L   G K +  DI T N  L   C  
Sbjct: 173 NTRRDIGLEIDLVSFQNLLMFLCRYKHVQIAESLLYSKG-KDFGMDIKTMNIVLNGWCVL 231

Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
            N  EA R +  +I   C P + TY   I    + G+   A + +  M ++ C  DV   
Sbjct: 232 GNVHEAKRFWKDIIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVIC 291

Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
             +ID L   ++V EA  +  E+  +G       ++S +   S I  +  +++L D M
Sbjct: 292 NCIIDALCFKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEM 349


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 126/278 (45%), Gaps = 16/278 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNANTYNIL------------GMQ 220
            P +     L+D  CK G V  A+ + CK  +  + PN +TY++L            G Q
Sbjct: 190 SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             E M + G  P+ + YN  I  +C   MV +A  +F  MR KG         TY I+I 
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACG---VMTYNILIG 306

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
            L +  +  E   L+  +   G  P++ TY  ++ G C  GK++ A +   ++ + G  P
Sbjct: 307 GLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP 366

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
            +VTYN  +      +N   AL L   M E    PS  TY +LI  +  L   + A E  
Sbjct: 367 TLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMH 426

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             M+K G   DV TY V+I GL     ++EA  L + +
Sbjct: 427 SLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSL 464



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 128/267 (47%), Gaps = 18/267 (6%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
           P  N  N L+  L +    D A  I   +K+KV  +A ++ I+            G + L
Sbjct: 122 PLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLL 181

Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
             + + G +P+   Y T ID  CK   V  A +LF  M   G     P   TY++++   
Sbjct: 182 AMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLV---PNPHTYSVLMNGF 238

Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
            +     E F +  +M  SG +P+   Y  ++   C  G V++A+K   EM  KG    +
Sbjct: 239 FKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGV 298

Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
           +TYN  +  LC  K   EA++L  ++ +VG  P++ TYN+LI+ + ++G+ D A   +++
Sbjct: 299 MTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQ 358

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVE 429
           +   G +  + TY  +I G    SKVE
Sbjct: 359 LKSSGLSPTLVTYNTLIAGY---SKVE 382



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 16/283 (5%)

Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
           P   A N L+   C  G+VD A  +   ++ K +     TYNIL             ++ 
Sbjct: 261 PNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKL 320

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           + ++ ++G +P+  TYN  I+ FC    +  A  LF  +++ G    SPT  TY  +I  
Sbjct: 321 VHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGL---SPTLVTYNTLIAG 377

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             + + +     L+  M      P   TY  +++        E+A +    M   G  PD
Sbjct: 378 YSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPD 437

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
           + TY+  +  LC + N  EA +L+  + E+   P+   YN +I  Y + G    A    +
Sbjct: 438 VYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLN 497

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
           EM   G   +V ++C  I  L    K +EA  LL +++N GLK
Sbjct: 498 EMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLK 540



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 16/227 (7%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
           KV   P I   N+L++  C  G +D A  +  ++K+  + P   TYN L           
Sbjct: 326 KVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLA 385

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
             +  ++EM +   AP   TY   ID F +     +A ++   M   G     P   TY+
Sbjct: 386 GALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLV---PDVYTYS 442

Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
           ++I  L  +  M+E   L   +      P+   Y  ++ G C  G    A + L EM + 
Sbjct: 443 VLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHS 502

Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
           G  P++ ++   + +LC ++   EA  L G+MI  G  PSV  Y M+
Sbjct: 503 GMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 4/222 (1%)

Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
           L  MI  GH P + T+N  +    ++    +A  +F  +++K        A ++ IMI  
Sbjct: 112 LHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSK----VVLDAYSFGIMIKG 167

Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
             +     + F LL  +   G  P+V  Y  +++G C  G V  A     +M   G  P+
Sbjct: 168 CCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPN 227

Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
             TY+  +          E  ++Y  M   G  P+   YN LIS Y   G  D AF+ + 
Sbjct: 228 PHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFA 287

Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
           EM ++G A  V TY ++I GL    K  EA  L+ +V   GL
Sbjct: 288 EMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGL 329


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 135/304 (44%), Gaps = 17/304 (5%)

Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
           QP +  LN L+D LCK G V  A      +K K +K NA TY  L             MQ
Sbjct: 425 QPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQ 484

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
             EEM+  G +PD   Y + I   C A  + +A+ +   ++  G ++       Y ++I 
Sbjct: 485 CFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDR---SCYNVLIS 541

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
              +  ++E  + LL  M  +G  PD  TY  ++  +   G    A K +E+M  +G  P
Sbjct: 542 GFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRP 601

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFET 399
            +VTY   +   C  KN DE ++++G M       P+   YN+LI       + D A   
Sbjct: 602 SVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISL 661

Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459
             +M  +    +  TY  ++ G+ D   + +A  L++ +V +  +  Y   +     LS 
Sbjct: 662 MEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSA 721

Query: 460 IGDL 463
           +G++
Sbjct: 722 VGEI 725



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 126/285 (44%), Gaps = 23/285 (8%)

Query: 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVK--NKVKPNANTYNIL----------- 217
           V  +P++   N L+D LCK G  +   ++ + +K  N  +PN  TYN L           
Sbjct: 351 VGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFD 410

Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
              +   +M + G  P+  T NT +D  CK   V  A + F  M+ KG       A TY 
Sbjct: 411 RAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGL---KGNAATYT 467

Query: 277 IMIVAL--VQN-DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
            +I A   V N +R  +CF     M++SGC PD   Y  ++ G+C+AG++ +A   + ++
Sbjct: 468 ALISAFCGVNNINRAMQCFE---EMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKL 524

Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
              G+  D   YN  +   C  K  +    L   M E G  P   TYN LIS   + G+ 
Sbjct: 525 KLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDF 584

Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
             A +   +M K G    V TY  +I        V+E   +  E+
Sbjct: 585 ATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEM 629



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 124/306 (40%), Gaps = 18/306 (5%)

Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
           K K +P +    +L++ LCK   +D A  +  R++ K   N                 +G
Sbjct: 309 KRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSN----------------WVG 352

Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
             PD   +NT ID  CK     +   L E M  K   I+ P   TY  +I    +    +
Sbjct: 353 VEPDVVLFNTLIDGLCKVGKEEDGLSLLEEM--KMGNINRPNTVTYNCLIDGFFKAGNFD 410

Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
               L   M   G  P+V T   +++G+C  G+V  A +F  EM  KG   +  TY   +
Sbjct: 411 RAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALI 470

Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              C   N + A++ +  M+  GC P    Y  LIS     G  + A     ++   G +
Sbjct: 471 SAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFS 530

Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
            D   Y V+I G     K+E    LL E+   G+K     +++ +  L   GD     K+
Sbjct: 531 LDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKV 590

Query: 470 SDHMRK 475
            + M K
Sbjct: 591 MEKMIK 596



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 17/256 (6%)

Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKP 209
            F  V+ +   ++ + E +     P+      L+  LC  G ++ A  +  ++K      
Sbjct: 472 AFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSL 531

Query: 210 NANTYNIL--GM----------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           + + YN+L  G           + L EM + G  PD  TYNT I    K      A+ + 
Sbjct: 532 DRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVM 591

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEG 316
           E M  +G     P+  TY  +I A      ++E   + G M + S   P+   Y  +++ 
Sbjct: 592 EKMIKEGL---RPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDA 648

Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
           +C    V+ A   +E+M  K   P+  TYN  LK + D K   +A  L  RM+E  C P 
Sbjct: 649 LCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPD 708

Query: 377 VQTYNMLISMYFELGE 392
             T  +L      +GE
Sbjct: 709 YITMEVLTEWLSAVGE 724



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 17/188 (9%)

Query: 166 TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------- 217
           TE  +   +P+    N L+  L K G     ++ + K +K  ++P+  TY  +       
Sbjct: 557 TEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSK 616

Query: 218 -----GMQTLEEMIQMGHAPDN-FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
                GM+   EM      P N   YN  ID  C+   V  A  L E M+ K      P 
Sbjct: 617 KNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRV---RPN 673

Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
             TY  ++  +     + + F L+  M+   C PD  T + + E +   G++E+   F+E
Sbjct: 674 TTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKHFVE 733

Query: 332 EMGNKGYP 339
              +  YP
Sbjct: 734 GYQDSSYP 741



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 42/185 (22%)

Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361
           G   D ++   +L  +     ++   + L EM  +   P +VT+   +  LC  +  DEA
Sbjct: 276 GGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEA 335

Query: 362 LRLYGRMIEVGC--W----------------------------------------PSVQT 379
           L+++ R+   G   W                                        P+  T
Sbjct: 336 LQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVT 395

Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
           YN LI  +F+ G  D A E + +M++ G   +V T   ++DGL    +V  A     E+ 
Sbjct: 396 YNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMK 455

Query: 440 NKGLK 444
            KGLK
Sbjct: 456 GKGLK 460


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 169/352 (48%), Gaps = 24/352 (6%)

Query: 123  DILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNL 182
            +I++S+      F  +C ++ ++ +  K    ++   ++ K  +  + +KT     + N 
Sbjct: 788  EIIASSGITLDDF-FLCPLIKHLCKQKKA---LEAHELVKKFKSFGVSLKT----GSYNS 839

Query: 183  LLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMG 229
            L+  L    L+D AE +   +K     P+  TYN+L             ++  EEM + G
Sbjct: 840  LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 899

Query: 230  HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
            +     TYNT I    K+R + +A DL+  + ++G    SPT  TY  ++  L++  R+E
Sbjct: 900  YESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGF---SPTPCTYGPLLDGLLKAGRIE 956

Query: 290  ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
            +  +L   M+  GC  + + Y  +L G  +AG  E+     ++M ++G  PDI +Y   +
Sbjct: 957  DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 1016

Query: 350  KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
              LC     ++ L  + +++E+G  P + TYN+LI    +    + A   ++EM K+G  
Sbjct: 1017 DTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIV 1076

Query: 410  QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
             ++ TY  +I  L    K  EA  + EE++ KG K     +++ +   SV G
Sbjct: 1077 PNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSG 1128



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 3/250 (1%)

Query: 224  EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
            EM ++G  PD FTYN  +D   K+  + E   + E M  KG      T  TY  +I  LV
Sbjct: 859  EMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGY---ESTYVTYNTIISGLV 915

Query: 284  QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
            ++ R+E+   L  ++++ G  P   TY  +L+G+  AG++E+A     EM   G   +  
Sbjct: 916  KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 975

Query: 344  TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
             YN  L       N ++   L+  M++ G  P +++Y ++I    + G+ +     + ++
Sbjct: 976  IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL 1035

Query: 404  DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
             + G   D+ TY ++IDGL    ++EEA  L  E+  KG+      ++S ++ L   G  
Sbjct: 1036 LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKA 1095

Query: 464  GAIHKLSDHM 473
                K+ + +
Sbjct: 1096 AEAGKMYEEL 1105



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 139/307 (45%), Gaps = 19/307 (6%)

Query: 181 NLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNI----LGMQ--------TLEEMIQ 227
           N +LD +   G V D AE      +  VK N  T+      LG++         L  M +
Sbjct: 173 NYMLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKE 232

Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
            G   + +TYN  +    K+    EA ++++ M   G     P+ +TY++++VA  +   
Sbjct: 233 AGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVV---PSVRTYSVLMVAFGKRRD 289

Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
           +E    LL  M   G  P+V +Y   +  +  A + +EAY+ L EM N+G  PD++T+  
Sbjct: 290 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTV 349

Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
            ++VLCD     +A  ++ +M +    P   TY  L+  + + GE     E W+ M   G
Sbjct: 350 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADG 409

Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLMQLSVIGDLG 464
              +V  Y  +ID L    +V EA  + +E+  KG+   +  Y    S  ++    GD  
Sbjct: 410 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDAL 469

Query: 465 AIHKLSD 471
            + K  D
Sbjct: 470 ELFKYMD 476



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 25/260 (9%)

Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN 238
           A   ++DALC+ G V  A                      ++  +EM Q G  P+ ++YN
Sbjct: 416 AYTAVIDALCQVGRVFEA----------------------LEMFDEMKQKGIVPEQYSYN 453

Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
           + I  F KA    +A +LF++M   G     P   T+ + I    ++    +       M
Sbjct: 454 SLISGFLKADRFGDALELFKYMDIHGP---KPNGYTHVLFINYYGKSGESIKAIQRYELM 510

Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
            + G +PDV     VL G+  +G++  A +   E+   G  PD +TY   +K        
Sbjct: 511 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 570

Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
           DEA++++  MIE  C P V   N LI   ++ G  D A++ ++++ +        TY  +
Sbjct: 571 DEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTL 630

Query: 419 IDGLFDCSKVEEACFLLEEV 438
           + GL    KV+E   LLEE+
Sbjct: 631 LAGLGREGKVKEVMHLLEEM 650



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 161/385 (41%), Gaps = 38/385 (9%)

Query: 107  HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML------DYMKRNNKVFVPVDVLLM 160
            +  NY    + YN ++D L           ++ SM       D    N  ++      L+
Sbjct: 651  YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYG-----LV 705

Query: 161  ILKQYTEKIKVKTQ------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT- 213
              ++Y E   +  Q      P+   L  +L +  K GL+  A  I K     ++P + T 
Sbjct: 706  KEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYF--LQPGSKTD 763

Query: 214  --------YNILGMQTLEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
                      IL     E+ I+        G   D+F     I   CK +   EA +L +
Sbjct: 764  RSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVK 823

Query: 259  FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
              ++ G ++ +    +Y  +I  LV  + ++    L   M   GC PD  TY  +L+ M 
Sbjct: 824  KFKSFGVSLKT---GSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMG 880

Query: 319  LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
             + ++EE  K  EEM  KGY    VTYN  +  L  ++  ++A+ LY  ++  G  P+  
Sbjct: 881  KSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPC 940

Query: 379  TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
            TY  L+    + G  + A   ++EM + GC  +   Y ++++G       E+ C L +++
Sbjct: 941  TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 1000

Query: 439  VNKGLKLPYRKFDSYLMQLSVIGDL 463
            V++G+    + +   +  L   G L
Sbjct: 1001 VDQGINPDIKSYTIIIDTLCKAGQL 1025



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 217 LGM--QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
           LGM  +   E+  MG +PD  TY   I    KA    EA  +F  M         P    
Sbjct: 535 LGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCV---PDVLV 591

Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
              +I  L +  R +E + +   +      P   TY  +L G+   GKV+E    LEEM 
Sbjct: 592 VNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMY 651

Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
           +  YPP+++TYN  L  LC N   ++AL +   M   GC P + +YN +I    +    +
Sbjct: 652 HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYN 711

Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
            AF  + +M K+    D  T C ++        ++EA  +++E
Sbjct: 712 EAFSIFCQM-KKVLIPDYATLCTILPSFVKIGLMKEALHIIKE 753



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 45/295 (15%)

Query: 165  YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK------VKPNANTYNILG 218
            + E  ++   P+    NLLLDA+ K   ++    + + +  K      V  N     ++ 
Sbjct: 857  FAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVK 916

Query: 219  MQTLEEMIQM-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFM----------- 260
             + LE+ I +       G +P   TY   +D   KA  + +A +LF  M           
Sbjct: 917  SRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTI 976

Query: 261  --------RTKGSTIS-------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
                    R  G+T               +P  K+Y I+I  L +  ++ +  +    ++
Sbjct: 977  YNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLL 1036

Query: 300  NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
              G  PD+ TY  +++G+  + ++EEA     EM  KG  P++ TYN  +  L       
Sbjct: 1037 EMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAA 1096

Query: 360  EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
            EA ++Y  ++  G  P+V TYN LI  Y   G  D A+  +  M   GC  +  T
Sbjct: 1097 EAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 8/249 (3%)

Query: 195 YAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254
           Y+ TIC RV  + +     Y IL      EM   G  PD  T+   I   C A  +++A 
Sbjct: 310 YSYTICIRVLGQARRFDEAYRILA-----EMENEGCKPDVITHTVLIQVLCDAGRISDAK 364

Query: 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
           D+F  M+    +   P   TY  ++     N   +    +   M   G   +V  Y  V+
Sbjct: 365 DVFWKMK---KSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVI 421

Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374
           + +C  G+V EA +  +EM  KG  P+  +YN  +          +AL L+  M   G  
Sbjct: 422 DALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPK 481

Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434
           P+  T+ + I+ Y + GE   A + +  M  +G   DV     ++ GL    ++  A  +
Sbjct: 482 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 541

Query: 435 LEEVVNKGL 443
             E+   G+
Sbjct: 542 FHELKAMGV 550



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 133/313 (42%), Gaps = 16/313 (5%)

Query: 174 QPEINALNLLLDALCKCGLV-DYAETICKRVKNKVKPNANTYNIL------------GMQ 220
           +P++    +L+  LC  G + D  +   K  K+  KP+  TY  L             M+
Sbjct: 341 KPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVME 400

Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
               M   G+  +   Y   ID  C+   V EA ++F+ M+ KG     P   +Y  +I 
Sbjct: 401 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIV---PEQYSYNSLIS 457

Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
             ++ DR  +   L  +M   G  P+  T+   +     +G+  +A +  E M +KG  P
Sbjct: 458 GFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP 517

Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
           D+V  N  L  L  +     A R++  +  +G  P   TY M+I    +  + D A + +
Sbjct: 518 DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIF 577

Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460
           ++M +  C  DV     +ID L+   + +EA  +  ++    L+     +++ L  L   
Sbjct: 578 YDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGRE 637

Query: 461 GDLGAIHKLSDHM 473
           G +  +  L + M
Sbjct: 638 GKVKEVMHLLEEM 650



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 117/312 (37%), Gaps = 50/312 (16%)

Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
           NA TYN L             ++  + M+  G  P   TY+  +  F K R V     L 
Sbjct: 238 NAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLL 297

Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
             M   G     P   +Y I I  L Q  R +E + +L  M N GC PDV T+  +++ +
Sbjct: 298 REMEAHGV---KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVL 354

Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD------------------ 359
           C AG++ +A     +M      PD VTY   L    DN                      
Sbjct: 355 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNV 414

Query: 360 -----------------EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
                            EAL ++  M + G  P   +YN LIS + +      A E +  
Sbjct: 415 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKY 474

Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
           MD  G   +  T+ + I+      +  +A    E + +KG+       ++ L  L+  G 
Sbjct: 475 MDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGR 534

Query: 463 LGAIHKLSDHMR 474
           LG   ++   ++
Sbjct: 535 LGMAKRVFHELK 546



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 51/161 (31%)

Query: 162  LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
            L  + + +++  +P++   NLL+D L K   ++ A ++   ++ K + PN  TYN L   
Sbjct: 1029 LTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILH 1088

Query: 218  ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
                       +  EE++  G  P+ FTYN  I                     +G ++S
Sbjct: 1089 LGKAGKAAEAGKMYEELLTKGWKPNVFTYNALI---------------------RGYSVS 1127

Query: 269  SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
              T   YA                   G MI  GCLP+ ST
Sbjct: 1128 GSTDSAYAA-----------------YGRMIVGGCLPNSST 1151


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,426,948,999
Number of Sequences: 23463169
Number of extensions: 300359564
Number of successful extensions: 790537
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5479
Number of HSP's successfully gapped in prelim test: 3880
Number of HSP's that attempted gapping in prelim test: 663601
Number of HSP's gapped (non-prelim): 53265
length of query: 499
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 352
effective length of database: 8,910,109,524
effective search space: 3136358552448
effective search space used: 3136358552448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)