BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036198
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%)
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
P T+ V D E F ++ M G P + +Y L G C G ++AY+
Sbjct: 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
M P+ LKV D KN D+ + R+ ++ S T++M+
Sbjct: 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 35/99 (35%)
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
P T+ V D E F + G P + +Y L G C G ++AY+
Sbjct: 103 PNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
P+ LKV D KN D+ + R+
Sbjct: 163 DAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRL 201
>pdb|1THZ|A Chain A, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|1THZ|B Chain B, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|2B1G|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|C Chain C, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|D Chain D, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
Length = 593
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK----EVLEGMCLAGKVE 324
+P A YA R + S G I + DV T K EV +G+ G E
Sbjct: 298 TPLASAYA--------RSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEE 349
Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR-LYG 366
EA K L + N GY C L++ + + D +R LYG
Sbjct: 350 EALKILSKKKNGGY--------CVLQMDPNYEPDDNEIRTLYG 384
>pdb|1M9N|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1M9N|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1OZ0|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor
Beta-dadf.
pdb|1OZ0|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor Beta-dadf
Length = 613
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK----EVLEGMCLAGKVE 324
+P A YA R + S G I + DV T K EV +G+ G E
Sbjct: 318 TPLASAYA--------RSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEE 369
Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR-LYG 366
EA K L + N GY C L++ + + D +R LYG
Sbjct: 370 EALKILSKKKNGGY--------CVLQMDPNYEPDDNEIRTLYG 404
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEM 225
L+D A+TI K++K+ + N Y+ L Q++EE+
Sbjct: 189 LLDDAKTIEKKIKSAISNLLNIYSTLSGQSIEEL 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,082,938
Number of Sequences: 62578
Number of extensions: 570851
Number of successful extensions: 1108
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 8
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)