BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036198
(499 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 379/474 (79%), Gaps = 25/474 (5%)
Query: 51 VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
V L+EAI+ N NAYD+MEKALD V LTT V +LQR Q+EEK AFRFF WAGHQ++
Sbjct: 95 VGILHEAIMANLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEH 154
Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-- 168
Y+HEP+AYN MIDILSSTKYK KQFR+V MLDYMKRNNK V VDVLL IL++Y E+
Sbjct: 155 YSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYL 214
Query: 169 -----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
I+VKTQPEINA N+LLDALCKCGLV E + +R++++VKP+ANT+N+L
Sbjct: 215 THVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVL 274
Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
M+ LEEMI+ GH P+NFTY AIDTFC+A MV EAADLF+FM TKGS
Sbjct: 275 FFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGS 334
Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
+S+PTAKT+A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+A KV+E
Sbjct: 335 AVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDE 394
Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
AYKFL+EM NKGYPPDIVTYNCFL+VLC+N+ DEAL+LYGRM+E C PSVQTYNMLIS
Sbjct: 395 AYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLIS 454
Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
M+FE+ +PDGAF TW EMDKR C QDV+TYC MI+GLFDC + +EACFLLEEVVNKGLKL
Sbjct: 455 MFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514
Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
PYR FDS+LM+LS +G+L AIHK+S+HM+KFYN +ARR AL++KR LR K
Sbjct: 515 PYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSEKRKSTKLRGK 568
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 222/441 (50%), Gaps = 47/441 (10%)
Query: 43 ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
ESS + +V ++ + +ID A D NME LD + + L+ D +V VL+RF+ K AFRF
Sbjct: 123 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 181
Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
F WA + +AH+ YN M+ IL+ T+ QF + S+L+ M + + + M
Sbjct: 182 FCWAAERQGFAHDSRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 237
Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
++K+Y KI V+T +N LLD+L + L A+ + ++K
Sbjct: 238 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
+ PN TY +L + +MI G PD +N ++ ++R ++
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351
Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
A LF M++KG P ++Y IMI + ME M++SG PD + Y
Sbjct: 352 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 408
Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
++ G K++ Y+ L+EM KG+PPD TYN +K++ + K + A R+Y +MI+
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE 468
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
PS+ T+NM++ YF + W EM K+G D ++Y V+I GL K EAC
Sbjct: 469 IEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREAC 528
Query: 433 FLLEEVVNKGLKLP---YRKF 450
LEE+++KG+K P Y KF
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKF 549
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 106/263 (40%), Gaps = 20/263 (7%)
Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI 216
L+ + + + I +P+I A N++L+ L + A + +K+K PN +Y I
Sbjct: 314 LIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
+ ++ ++M+ G PD Y I F + + +L + M+ KG
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
P KTY +I + E + MI + P + T+ +++ +A E
Sbjct: 434 H---PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYE 490
Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
EEM KG PD +Y ++ L EA R M++ G + YN
Sbjct: 491 MGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550
Query: 385 SMYFELGEPDGAFETWHEMDKRG 407
+ + G+P E + E+ +R
Sbjct: 551 ADFHRGGQP----EIFEELAQRA 569
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 220/441 (49%), Gaps = 47/441 (10%)
Query: 43 ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
ESS + +V ++ + +ID A D NME LD + + L+ D +V VL+RF+ K AFRF
Sbjct: 122 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 180
Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
F WA + +AH+ YN M+ IL+ T+ QF + S+L+ M + + + M
Sbjct: 181 FCWAAERQGFAHDSRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 236
Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
++K+Y KI V+T +N LLD+L + L A+ + ++K
Sbjct: 237 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 290
Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
+ PN TY +L + +MI G PD +N ++ ++ ++
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350
Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
A LF M++KG P ++Y IMI + ME M++SG PD + Y
Sbjct: 351 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 407
Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
++ G K++ Y+ L+EM KG+PPD TYN +K++ + K + R+Y +MI+
Sbjct: 408 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 467
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
PS+ T+NM++ YF + W EM K+G D ++Y V+I GL K EAC
Sbjct: 468 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 527
Query: 433 FLLEEVVNKGLKLP---YRKF 450
LEE+++KG+K P Y KF
Sbjct: 528 RYLEEMLDKGMKTPLIDYNKF 548
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 34/284 (11%)
Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI 216
L+ + + + I +P+I A N++L+ L + A + +K+K PN +Y I
Sbjct: 313 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 372
Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
+ ++ ++M+ G PD Y I F + + +L + M+ KG
Sbjct: 373 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 432
Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
P KTY +I + E + MI + P + T+ +++ +A E
Sbjct: 433 H---PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYE 489
Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
+EM KG PD +Y ++ L EA R M++ G + YN
Sbjct: 490 MGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 549
Query: 385 SMYFELGEPD------------------GAFETWHEMDKRGCAQ 410
+ + G+P+ F W +M +R C Q
Sbjct: 550 ADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 593
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 218 bits (555), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 219/441 (49%), Gaps = 47/441 (10%)
Query: 43 ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
ESS + +V ++ + +ID A D NME LD + + L+ D +V VL+RF+ K AFRF
Sbjct: 123 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 181
Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
F WA + +AH YN M+ IL+ T+ QF + S+L+ M + + + M
Sbjct: 182 FCWAAERQGFAHASRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 237
Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
++K+Y KI V+T +N LLD+L + L A+ + ++K
Sbjct: 238 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
+ PN TY +L + +MI G PD +N ++ ++ ++
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 351
Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
A LF M++KG P ++Y IMI + ME M++SG PD + Y
Sbjct: 352 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 408
Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
++ G K++ Y+ L+EM KG+PPD TYN +K++ + K + R+Y +MI+
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 468
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
PS+ T+NM++ YF + W EM K+G D ++Y V+I GL K EAC
Sbjct: 469 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 528
Query: 433 FLLEEVVNKGLKLP---YRKF 450
LEE+++KG+K P Y KF
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKF 549
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 34/284 (11%)
Query: 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI 216
L+ + + + I +P+I A N++L+ L + A + +K+K PN +Y I
Sbjct: 314 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 217 L------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
+ ++ ++M+ G PD Y I F + + +L + M+ KG
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
P KTY +I + E + MI + P + T+ +++ +A E
Sbjct: 434 H---PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYE 490
Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
+EM KG PD +Y ++ L EA R M++ G + YN
Sbjct: 491 MGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550
Query: 385 SMYFELGEPD------------------GAFETWHEMDKRGCAQ 410
+ + G+P+ F W +M +R C Q
Sbjct: 551 ADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 594
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 30 IGKVPSLVCKVF-----DESSDSVSDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTD 82
I + CK F SS+ V DVA + + I + S+ ++ ALD G+ ++ +
Sbjct: 42 INRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQE 101
Query: 83 SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
V VL RF+ + +RFF W+ Q +Y H AY++MI+ + K +Q++L+ ++
Sbjct: 102 VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIE----STAKIRQYKLMWDLI 157
Query: 143 DYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-------------PEINALNLLLDALCK 189
+ M++ K + V+ +++++Y KV P + A N LL ALCK
Sbjct: 158 NAMRK--KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK 215
Query: 190 CGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
V A+ + + ++++ P++ TY+IL + EMI G PD TY
Sbjct: 216 SKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTY 275
Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
+ +D CKA V EA + +R+ +I PT Y++++ +R+EE
Sbjct: 276 SIMVDILCKAGRVDEALGI---VRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLE 332
Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
M SG DV+ + ++ C A +++ Y+ L+EM +KG P+ + N L+ L +
Sbjct: 333 MERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGE 392
Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
DEA ++ +MI+V C P TY M+I M+ E E + A + W M K+G + T+ V
Sbjct: 393 KDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSV 451
Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLK 444
+I+GL + ++AC LLEE++ G++
Sbjct: 452 LINGLCEERTTQKACVLLEEMIEMGIR 478
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 17/232 (7%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNIL------ 217
+ E I P+I ++++D LCK G VD A I + + + KP Y++L
Sbjct: 260 FREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGT 319
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
+ T EM + G D +N+ I FCKA + + + M++KG T P
Sbjct: 320 ENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVT---PN 376
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
+K+ I++ L++ +E F + MI C PD TY V++ C ++E A K +
Sbjct: 377 SKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWK 435
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
M KG P + T++ + LC+ + +A L MIE+G PS T+ L
Sbjct: 436 YMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRL 487
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 120/435 (27%), Positives = 203/435 (46%), Gaps = 34/435 (7%)
Query: 35 SLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFE 94
LVC E + +V K+Y + ++ + +E AL+ G+ L ++ VL R
Sbjct: 52 GLVCPEKHED-EFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDA 110
Query: 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
+ +RFF+WA Q Y H M+ ILS K +QF V +++ M++ N +
Sbjct: 111 GNLGYRFFLWATKQPGYFHSYEVCKSMVMILS----KMRQFGAVWGLIEEMRKTNPELIE 166
Query: 155 VDVLLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICK 201
++ +++++++ VK +P+ LLDALCK G V A + +
Sbjct: 167 PELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFE 226
Query: 202 RVKNKVKPNANTYNILG---------MQTLEEMIQMGHA---PDNFTYNTAIDTFCKARM 249
++ K PN + L M+ E ++QM A PD + + + A
Sbjct: 227 DMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK 286
Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVS 308
+ +A DL MR +G P Y ++I AL + + RM+E + M GC D+
Sbjct: 287 MADAYDLMNDMRKRGF---EPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIV 343
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
TY ++ G C G +++ Y L++M KG P VTY + + +E L L +M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
GC P + YN++I + +LGE A W+EM+ G + VDT+ +MI+G +
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463
Query: 429 EEACFLLEEVVNKGL 443
EAC +E+V++G+
Sbjct: 464 IEACNHFKEMVSRGI 478
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 175 bits (443), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 208/431 (48%), Gaps = 38/431 (8%)
Query: 44 SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
S D V++++++ + D+ N D++E L + ++++ V VL+R + A RFF+
Sbjct: 34 SPDLVNEISRV---LSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFL 90
Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
WA ++AH +Y+++++IL S+K QF L+ L + N + V ++ +
Sbjct: 91 WARRIPDFAHSLESYHILVEILGSSK----QFALLWDFLIEAREYNYFEISSKVFWIVFR 146
Query: 164 QYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKP 209
Y+ ++ +P ++ L+ LL +LC V++A+ + K + P
Sbjct: 147 AYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVP 206
Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
+A TY+IL + +EM++ D YN +D CK+ V +F
Sbjct: 207 SAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMF 266
Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
+ M G+ P A ++AI I A + + +L M +P+V T+ +++ +
Sbjct: 267 QEM---GNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTL 323
Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
C KV++AY L+EM KG PD TYN + CD+ + A +L RM C P
Sbjct: 324 CKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDR 383
Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLE 436
TYNM++ + +G D A E W M +R V TY VMI GL K+EEAC E
Sbjct: 384 HTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFE 443
Query: 437 EVVNKGLKLPY 447
++++G+ PY
Sbjct: 444 MMIDEGIP-PY 453
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 17/246 (6%)
Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
K + E ++ ++ A N LLDALCK G VD + + + N +KP+A ++ I
Sbjct: 229 KVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAY 288
Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
+ L+ M + P+ +T+N I T CK V +A L + M KG+ +
Sbjct: 289 CDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGA---N 345
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
P TY ++ + + LL M + CLPD TY VL+ + G+ + A +
Sbjct: 346 PDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEI 405
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNG-DEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
E M + + P + TY + L K +EA R + MI+ G P T ML +
Sbjct: 406 WEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLV 465
Query: 389 ELGEPD 394
G+ D
Sbjct: 466 GWGQMD 471
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%)
Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
V A EA + M G P + + L LCD K+ + A +G+ G
Sbjct: 144 VFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFG 203
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
PS +TY++L+ + + + GA + + EM +R C D+ Y ++D L V+
Sbjct: 204 IVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGY 263
Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
+ +E+ N GLK F ++ GD+ + +K+ D M+++
Sbjct: 264 KMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRY 307
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 194/421 (46%), Gaps = 32/421 (7%)
Query: 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
SDV K Y + + +E AL+ GV L + VL R + +RFF+WA
Sbjct: 80 ASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAK 139
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
Q Y H Y M+ ILS K +QF V +++ M++ N + ++ +++++++
Sbjct: 140 QPRYCHSIEVYKSMVKILS----KMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFAS 195
Query: 168 KIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
VK +P+ LLDALCK G V A + + ++ + N +
Sbjct: 196 ADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYF 255
Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
L L +M + G PD Y + + A + +A DL MR
Sbjct: 256 TSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRR 315
Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
+G P A Y ++I AL + DRMEE + M C DV TY ++ G C GK
Sbjct: 316 RGF---EPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGK 372
Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
+++ Y L++M KG P +TY + ++ +E L L +M ++ P + YN+
Sbjct: 373 IDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNV 432
Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
+I + +LGE A W+EM++ G + VDT+ +MI+GL + EA +E+V +G
Sbjct: 433 VIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRG 492
Query: 443 L 443
L
Sbjct: 493 L 493
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 201/428 (46%), Gaps = 41/428 (9%)
Query: 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
V D+ K+ + + +++++ K L V +T V+ VL+RF A+ FF+WA
Sbjct: 99 VEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANS 158
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-FVPVDVLLMILKQYT 166
Q Y H YN M+D+L K + F L+ +++ M +N + V +D + ++++
Sbjct: 159 QTGYVHSGHTYNAMVDVLG----KCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLA 214
Query: 167 EKIK----------------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
+ K VKT + A+N L+DAL K +++A + ++ + +KP+
Sbjct: 215 KSGKYNKAVDAFLEMEKSYGVKT--DTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPD 272
Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
A T+NIL ++ M PD TY + ++ +CK ++ E
Sbjct: 273 ARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLE 332
Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
MR G +P TY I++ +L ++ ++ E + M GC+PD Y ++ +
Sbjct: 333 EMRENG---CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILS 389
Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE---VGCWP 375
G+ ++A + E+M N+G D++ YN + + + ALRL RM + C P
Sbjct: 390 KTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSP 449
Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
+V+TY L+ M + H M K + DV TY ++I GL KVEEAC
Sbjct: 450 NVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFF 509
Query: 436 EEVVNKGL 443
EE V KG+
Sbjct: 510 EEAVRKGM 517
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 118/264 (44%), Gaps = 23/264 (8%)
Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
N ++D L KC D + N++ N + ++ + T+ ++ M + YN A
Sbjct: 170 NAMVDVLGKCRNFDLMWELV----NEMNKNEES-KLVTLDTMSKV--MRRLAKSGKYNKA 222
Query: 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
+D F E ++ G + + T ++M ALV+ + +E + + +
Sbjct: 223 VDAF------------LEMEKSYG--VKTDTIAMNSLMD-ALVKENSIEHAHEVFLKLFD 267
Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
+ PD T+ ++ G C A K ++A ++ M + PD+VTY F++ C +
Sbjct: 268 T-IKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRR 326
Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
+ M E GC P+V TY +++ + + A + +M + GC D Y +I
Sbjct: 327 VNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIH 386
Query: 421 GLFDCSKVEEACFLLEEVVNKGLK 444
L + ++A + E++ N+G++
Sbjct: 387 ILSKTGRFKDAAEIFEDMTNQGVR 410
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 15/281 (5%)
Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
Q G+ TYN +D K R +L M K T T + ++ L ++
Sbjct: 159 QTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEM-NKNEESKLVTLDTMSKVMRRLAKSG 217
Query: 287 RMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
+ + M S G D +++ + +E A++ ++ + PD T+
Sbjct: 218 KYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDT-IKPDARTF 276
Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
N + C + D+A + M P V TY + Y + G+ E EM +
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRE 336
Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ-LSVIGDLG 464
GC +V TY +++ L +V EA + E++ G +P KF S L+ LS G
Sbjct: 337 NGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGC-VPDAKFYSSLIHILSKTGRFK 395
Query: 465 AIHKLSDHMRK--------FYNPVIARRLALNQKRVRISLR 497
++ + M YN +I+ AL+ R ++LR
Sbjct: 396 DAAEIFEDMTNQGVRRDVLVYNTMIS--AALHHSRDEMALR 434
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 227/495 (45%), Gaps = 46/495 (9%)
Query: 36 LVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEE 95
L C + DE DV K+ + + D + + L+ V + + VV +L R + +
Sbjct: 84 LGCSISDELVSE--DVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDW 141
Query: 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
+ AF FF+WAG Q Y Y+ MI IL K ++F +++D M++ + V
Sbjct: 142 ETAFTFFVWAGKQQGYVRSVREYHSMISILG----KMRKFDTAWTLIDEMRKFSPSLVNS 197
Query: 156 DVLLMILKQYTEKIKV-------------KTQPEINALNLLLDALCKCGLVDYAETICKR 202
LL+++++Y V K + I+ LL ALC+ V A +
Sbjct: 198 QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFC 257
Query: 203 VKNKVKPNANTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
K+K +A ++NI+ + EM +G D +Y++ I + K
Sbjct: 258 NKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGS 317
Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVS 308
+ + LF+ M+ + P K Y ++ AL + + E +L+ M G P+V
Sbjct: 318 LNKVLKLFDRMKKE---CIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVV 374
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
TY +++ +C A K EEA + +EM KG P I TY+ F+++L + G+E L +M
Sbjct: 375 TYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL---RTGEEVFELLAKM 431
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
++GC P+V+TY MLI + D W EM ++ D+ +Y VMI GLF K+
Sbjct: 432 RKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKI 491
Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA-- 486
EEA +E+ +KG++ P + ++Q G A +++D + I ++
Sbjct: 492 EEAYGYYKEMKDKGMR-PNENVED-MIQSWFSGKQYAEQRITDSKGEVNKGAIVKKSERE 549
Query: 487 ---LNQKRVRISLRE 498
L Q VR +RE
Sbjct: 550 KNFLQQPEVRKVVRE 564
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
P++ N+++ CK G ++ A ++ R+ V P+ TYN + M+ L
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS--VSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
+ M+Q PD TY I+ C+ V A L + MR +G T P TY +++ +
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT---PDVVTYNVLVNGI 284
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
+ R++E L M +SGC P+V T+ +L MC G+ +A K L +M KG+ P +
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
VT+N + LC A+ + +M + GC P+ +YN L+ + + + D A E
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404
Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
M RGC D+ TY M+ L KVE+A +L ++ +KG +++ + L+ G
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 463 LGAIHKLSDHMR 474
G KL D MR
Sbjct: 465 TGKAIKLLDEMR 476
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 141/283 (49%), Gaps = 16/283 (5%)
Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
QP + N++L ++C G +D + + ++ P+ T+NIL +
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAID 365
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
LE+M Q G P++ +YN + FCK + + A + E M ++G P TY M+
Sbjct: 366 ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY---PDIVTYNTMLT 422
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
AL ++ ++E+ +L + + GC P + TY V++G+ AGK +A K L+EM K P
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
D +TY+ + L DEA++ + +G P+ T+N ++ + + D A +
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFL 542
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
M RGC + +Y ++I+GL +EA LL E+ NKGL
Sbjct: 543 VFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 164/364 (45%), Gaps = 29/364 (7%)
Query: 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI-----LKQYTEKIK 170
+ YN+MI S KA + S+LD M + V +L + LKQ E +
Sbjct: 173 ITYNVMI----SGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 171 VKTQ----PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
Q P++ +L++A C+ V +A + ++++ P+ TYN+L
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288
Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
++ L +M G P+ T+N + + C +A L M KG SP+
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF---SPSVV 345
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
T+ I+I L + + +L M GC P+ +Y +L G C K++ A ++LE M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
++G PDIVTYN L LC + ++A+ + ++ GC P + TYN +I + G+
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
A + EM + D TY ++ GL KV+EA E G++ F+S
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525
Query: 454 LMQL 457
++ L
Sbjct: 526 MLGL 529
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 14/272 (5%)
Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
G + LE M+ G+ PD T I FC+ +AA + E + G+ P TY +
Sbjct: 121 GFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAV---PDVITYNV 177
Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
MI + + S+L M S PDV TY +L +C +GK+++A + L+ M +
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234
Query: 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397
PD++TY ++ C + A++L M + GC P V TYN+L++ + G D A
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294
Query: 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
+ ++M GC +V T+ +++ + + +A LL +++ KG F+ + L
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354
Query: 458 SVIGDLGAIHKLSDHMRKF--------YNPVI 481
G LG + + M + YNP++
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLL 386
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+V+ +EE F L +M+ G +PD+ ++ G C GK +A K LE + G PD
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 342 --------------------------------IVTYNCFLKVLCDNKNGDEALRLYGRMI 369
+VTYN L+ LCD+ +A+ + RM+
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231
Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
+ C+P V TY +LI A + EM RGC DV TY V+++G+ +++
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291
Query: 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD-LGAIHKLSDHMRKFYNPVI 481
EA L ++ + G + + L + G + A L+D +RK ++P +
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
L DV + L M G++EE +KFLE M G PDI+ ++ C +A +
Sbjct: 100 LEDVESNNH-LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAK 158
Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
+ + G P V TYN++IS Y + GE + A +D+ + DV TY ++ L
Sbjct: 159 ILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLC 215
Query: 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLGAIH--KLSDHMR 474
D K+++A +L+ ++ + Y +Y + + + D G H KL D MR
Sbjct: 216 DSGKLKQAMEVLDRMLQRDC---YPDVITYTILIEATCRDSGVGHAMKLLDEMR 266
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 23/182 (12%)
Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
+ML + ++ KV V+ IL Q + K P + N ++D L K G A +
Sbjct: 419 TMLTALCKDGKVEDAVE----ILNQLSSK---GCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 200 CKRVKNK-VKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
++ K +KP+ TY+ L ++ E +MG P+ T+N+ + CK
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531
Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
+R A D FM +G P +Y I+I L +E LL + N G +
Sbjct: 532 SRQTDRAIDFLVFMINRGC---KPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK 588
Query: 307 VS 308
S
Sbjct: 589 SS 590
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/439 (26%), Positives = 194/439 (44%), Gaps = 54/439 (12%)
Query: 49 SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
SD + + +I N N + ME +L G+ LT + + L R + KIA FF +
Sbjct: 39 SDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSL 98
Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
+ + P ++NL+IDIL + +QF +V ++ M + + P L+++ +
Sbjct: 99 PSPSTTPTSFNLIIDILG----RVRQFDVVRQLIVEMDQTS----PETFLILVKRLIAAG 150
Query: 169 IKVKTQPEINALN-----------------LLLDALCKCGLVDYAETICKRVKNKVKPNA 211
+ T+ + A + LLD LCK G A + K + +
Sbjct: 151 L---TRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDE 207
Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA----------RM 249
Y IL + L EMI+ G P+ TYN ++ C+ R
Sbjct: 208 KVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERN 267
Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
V A +F+ MR +G P +++I++ + + E + M G P + T
Sbjct: 268 VRNAEKVFDEMRQRGI---EPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIET 324
Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
Y V++ +C G++EEA + LE M G P TYNCF K K+ + A+ LY +M
Sbjct: 325 YTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMK 384
Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
C PS QTYN+L+ + LG+ + E W ++ D+D+Y ++ GL K +
Sbjct: 385 NGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWK 444
Query: 430 EACFLLEEVVNKGLKLPYR 448
EAC E++ +G LP +
Sbjct: 445 EACGYFVEMIERGF-LPQK 462
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
M++ G +P + TYN + + A +L+ M+ + + P+ +TY +++ +
Sbjct: 348 MVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMK---NGLCKPSTQTYNVLLGTFIN 404
Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
+ME + + S PD+ +Y ++ G+C K +EA + EM +G+ P +T
Sbjct: 405 LGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLT 464
Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIE 370
+ K L + RL ++ E
Sbjct: 465 FETLYKGLIQSNKMRTWRRLKKKLDE 490
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 153/299 (51%), Gaps = 17/299 (5%)
Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL------------GMQTLEE 224
++N+++ CK G V+ A + + N+ P+ T+N L ++ ++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
M+Q G+ PD +TYN+ I CK V EA ++ + M T+ SP TY +I L +
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC---SPNTVTYNTLISTLCK 377
Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
+++EE L + + G LPDV T+ +++G+CL A + EEM +KG PD T
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
YN + LC DEAL + +M GC SV TYN LI + + + A E + EM+
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
G +++ TY +IDGL +VE+A L+++++ +G K ++S L GD+
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 142/297 (47%), Gaps = 18/297 (6%)
Query: 175 PEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNILGMQTL------EEMIQ 227
P++ N ++ LCK G V A E + + + PN TYN L + TL EE +
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL-ISTLCKENQVEEATE 386
Query: 228 M-------GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
+ G PD T+N+ I C R A +LFE MR+KG P TY ++I
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC---EPDEFTYNMLID 443
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
+L +++E ++L M SGC V TY +++G C A K EA + +EM G
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
+ VTYN + LC ++ ++A +L +MI G P TYN L++ + G+ A +
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
M GC D+ TY +I GL +VE A LL + KG+ L ++ + L
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 43/399 (10%)
Query: 90 RFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149
R Q ++ A R F A + N++ EP Y ++ L ++ F + +L+ MK ++
Sbjct: 58 RSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLG----RSGSFDDMKKILEDMK-SS 112
Query: 150 KVFVPVDVLLMILKQYTEKIKVKTQPEI-NALNLLLDALCKCGLVDYAETICKRVKNKVK 208
+ + L++++ Y + + Q EI + ++ ++D +K
Sbjct: 113 RCEMGTSTFLILIESYAQ---FELQDEILSVVDWMIDEF------------------GLK 151
Query: 209 PNANTYN----ILGMQTLEEMIQMGHA--------PDNFTYNTAIDTFCKARMVTEAADL 256
P+ + YN +L +++++ HA PD T+N I C+A + A +
Sbjct: 152 PDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILM 211
Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
E M + G P KT+ ++ ++ ++ + M+ GC + ++ G
Sbjct: 212 LEDMPSYGLV---PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268
Query: 317 MCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
C G+VE+A F++EM N+ G+ PD T+N + LC + A+ + M++ G P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
V TYN +IS +LGE A E +M R C+ + TY +I L ++VEEA L
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474
+ +KG+ F+S + L + + +L + MR
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 167/399 (41%), Gaps = 34/399 (8%)
Query: 75 LGVPLTTDSVVGVLQRFQFEEKI--AFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKA 132
G + SV ++ F E ++ A F +QD + + +N +++ L KA
Sbjct: 253 FGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC----KA 308
Query: 133 KQFRLVCSMLDYMKRNN---KVFVPVDVL--LMILKQYTEKIKVKTQ-------PEINAL 180
+ ++D M + V+ V+ L L + E ++V Q P
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
N L+ LCK V+ A + + + +K + P+ T+N L M+ EEM
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
G PD FTYN ID+ C + EA ++ + M G S TY +I + ++
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS---VITYNTLIDGFCKANK 485
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
E + M G + TY +++G+C + +VE+A + +++M +G PD TYN
Sbjct: 486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
L C + +A + M GC P + TY LIS + G + A + + +G
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
Y +I GLF K EA L E++ + P
Sbjct: 606 INLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 122/288 (42%), Gaps = 24/288 (8%)
Query: 181 NLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQ 227
N L+D CK AE I ++ + V N+ TYN L Q +++MI
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
G PD +TYN+ + FC+ + +AAD+ + M + G P TY +I L + R
Sbjct: 534 EGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC---EPDIVTYGTLISGLCKAGR 590
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPDIVTYN 346
+E LL + G Y V++G+ K EA EM + PPD V+Y
Sbjct: 591 VEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650
Query: 347 CFLKVLCDNKNGD--EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
+ LC N G EA+ ++E G P + ML L + + + +
Sbjct: 651 IVFRGLC-NGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVM 709
Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452
++ A+ + M+ GL K ++A L V++ + P R + S
Sbjct: 710 QK--ARFSEEEVSMVKGLLKIRKFQDALATLGGVLDS--RQPRRTYRS 753
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 3/174 (1%)
Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
P+ + Y+E+L + +G ++ K LE+M + T+ ++ + DE L +
Sbjct: 81 PEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSV 140
Query: 365 YGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWH-EMDKRGCAQDVDTYCVMIDGL 422
MI E G P YN ++++ + G E H +M G DV T+ V+I L
Sbjct: 141 VDWMIDEFGLKPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKAL 199
Query: 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
++ A +LE++ + GL + F + + GDL ++ + M +F
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF 253
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 194/432 (44%), Gaps = 40/432 (9%)
Query: 49 SDVAKLYEAIIDNSNA-YDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWA-G 106
+D A + + I+ + N + + + L + P T + V VL+R A +FF +
Sbjct: 23 ADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDN 82
Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
H Y H+ +++L IDI + + L+ M R+ ++ ++ ++Y
Sbjct: 83 HHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRM-----RSLRIGPSPKTFAIVAERYA 137
Query: 167 EKIKVKTQ-------------PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT 213
K ++ + N +LD LCK V+ A + + ++ + + T
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 197
Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
YN++ ++ L+EM++ G P+ TYNT + F +A + A + F M+
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMK 257
Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
+ I TY ++ ++ ++ MI G LP V+TY +++ +C
Sbjct: 258 KRDCEID---VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKD 314
Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
VE A EEM +GY P++ TYN ++ L L RM GC P+ QTYN
Sbjct: 315 NVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYN 374
Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEV 438
M+I Y E E + A + +M C ++DTY ++I G+F + E+ A LL E+
Sbjct: 375 MMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEM 434
Query: 439 VNKGLKLPYRKF 450
V +G +P RKF
Sbjct: 435 VERGF-IP-RKF 444
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
Query: 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
+SL+ M + P T+ V E AGK ++A K M G D+ ++N L V
Sbjct: 111 WSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDV 170
Query: 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411
LC +K ++A L+ R + TYN++++ + + A E EM +RG +
Sbjct: 171 LCKSKRVEKAYELF-RALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPN 229
Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471
+ TY M+ G F ++ A E+ + ++ + + + V G++ + D
Sbjct: 230 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD 289
Query: 472 HM 473
M
Sbjct: 290 EM 291
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 16/110 (14%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL--GM----------- 219
+P N+++ +C V+ A + +++ PN +TYNIL GM
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVV 426
Query: 220 --QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
+ L EM++ G P FT+N ++ A ++ GS +
Sbjct: 427 AGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSGSRL 476
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 154/320 (48%), Gaps = 16/320 (5%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
+++ +P+I A N ++D+LCK V+ A K ++ K ++PN TY L
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
+ L +MI+ P+ TY+ +D F K V EA +LFE M P TY
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI---DPDIVTY 298
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
+ +I L +DR++E + M++ GCL DV +Y ++ G C A +VE+ K EM
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
+G + VTYN ++ + D+A + +M G P + TYN+L+ + GE +
Sbjct: 359 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418
Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
A + +M KR D+ TY +I G+ KVEEA L + KGLK + + +
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478
Query: 456 QLSVIGDLGAIHKLSDHMRK 475
L G L + L M++
Sbjct: 479 GLCTKGLLHEVEALYTKMKQ 498
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 147/325 (45%), Gaps = 16/325 (4%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNI------- 216
+++ +K + P I N LL A+ K D ++ K+++ ++ + T+NI
Sbjct: 73 FSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCC 132
Query: 217 -----LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
L + L +M+++G+ PD T + ++ FC+ V++A L + M G P
Sbjct: 133 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY---KPD 189
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
Y +I +L + R+ + F + G P+V TY ++ G+C + + +A + L
Sbjct: 190 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 249
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
+M K P+++TY+ L N EA L+ M+ + P + TY+ LI+
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 309
Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
D A + + M +GC DV +Y +I+G +VE+ L E+ +GL ++
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 452 SYLMQLSVIGDLGAIHKLSDHMRKF 476
+ + GD+ + M F
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFF 394
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 5/204 (2%)
Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
++ + L M+ S P + + +L + K + ++M G D+ T+N
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
+ C AL + G+M+++G P T L++ + A +M +
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK---LPYRKFDSYLMQLSVIGDL 463
G D+ Y +ID L +V +A +E+ KG++ + Y + L S D
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD- 243
Query: 464 GAIHKLSDHMRKFYNPVIARRLAL 487
A LSD ++K P + AL
Sbjct: 244 -AARLLSDMIKKKITPNVITYSAL 266
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 137/283 (48%), Gaps = 30/283 (10%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEE 224
Y E I+ K QP + N++++ALCK G ++ A + +E+
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDV----------------------MED 248
Query: 225 MIQMGHAPDNFTYNTAIDTFCK----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
M G +P+ +YNT ID +CK +M A L E + SP T+ I+I
Sbjct: 249 MKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEND----VSPNLTTFNILID 304
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
++D + + M++ P+V +Y ++ G+C GK+ EA ++M + G P
Sbjct: 305 GFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQP 364
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
+++TYN + C N EAL ++G + G P+ + YNMLI Y +LG+ D F
Sbjct: 365 NLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALK 424
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
EM++ G DV TY +I GL +E A L +++ +KGL
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL 467
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 151/296 (51%), Gaps = 19/296 (6%)
Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------- 217
E ++ P + N+L+D K + + + K + ++ VKPN +YN L
Sbjct: 286 EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGG 345
Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
+ ++M+ G P+ TYN I+ FCK M+ EA D+F ++ +G+ PT +
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAV---PTTR 402
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
Y ++I A + ++++ F+L M G +PDV TY ++ G+C G +E A K +++
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
+KG P D+VT++ ++ C +A L M ++G P TYN+++ Y + G
Sbjct: 463 TSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521
Query: 394 DGAFETWHEMDK-RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
A +M+K R +V +Y V++ G K+E+A LL E++ KGL +P R
Sbjct: 522 KAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL-VPNR 576
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316
FE + G +A + +++AL++ +R + + MI P+V T+ V+
Sbjct: 173 FEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINA 232
Query: 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD-NKNGD--EALRLYGRMIEVGC 373
+C GK+ +A +E+M G P++V+YN + C NG +A + M+E
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDV 292
Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433
P++ T+N+LI +++ G+ + + EM + +V +Y +I+GL + K+ EA
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAIS 352
Query: 434 LLEEVVNKGLK 444
+ +++V+ G++
Sbjct: 353 MRDKMVSAGVQ 363
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 83/226 (36%), Gaps = 53/226 (23%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---------- 217
+ QP + N L++ CK ++ A + VK + P YN+L
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKI 417
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
G EEM + G PD TYN I C+ + A LF+ + +KG P T+
Sbjct: 418 DDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL----PDLVTF 473
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLP------------------------------ 305
I++ + + LL M G P
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533
Query: 306 ------DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
+V++Y +L+G GK+E+A L EM KG P+ +TY
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
+ E ++ + G GY ++ + L + +Y MI P+V T+N
Sbjct: 168 RFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFN 227
Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG---LFDCSKVEEACFLLEEV 438
++I+ + G+ + A + +M GC+ +V +Y +IDG L K+ +A +L+E+
Sbjct: 228 VVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM 287
Query: 439 V 439
V
Sbjct: 288 V 288
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 181/411 (44%), Gaps = 26/411 (6%)
Query: 68 MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
++K+L SLG+ L+ D V VL R + FF WA + + +Y++++ L
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163
Query: 128 TKYKAKQFRLVCSM--------LDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINA 179
K + ++ M L+ + FV V + ++ + E + +
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223
Query: 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI-------LGM-----QTLEEMIQ 227
N LL LC+ V A+++ K + ++ +YNI LG + L+EM++
Sbjct: 224 FNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVE 283
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
G PD +Y+ I+ + + ++ ++F+ ++ KG+ P A Y MI +
Sbjct: 284 SGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNV---PDANVYNAMICNFISARD 340
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
+E M++ C P++ TY +++ G+ KV +A + EEM ++G P
Sbjct: 341 FDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTS 400
Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
FLK LC A+ +Y + + GC S Y +L+ G+ W EM + G
Sbjct: 401 FLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESG 460
Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL---KLPYRKFDSYLM 455
DV+ Y ++DGL +E A ++EE + KG + Y + S LM
Sbjct: 461 YPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLM 511
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/407 (19%), Positives = 162/407 (39%), Gaps = 78/407 (19%)
Query: 7 VSPTEAQYAVLVRVIRTKSLQSYIGKV-PSLVCKVFDESSDSVSDVAKLYEAIIDNSNAY 65
V+ Y+V++R + + L S++ V +VC+ + + ++ + + A
Sbjct: 147 VTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAI 206
Query: 66 DNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL 125
+ E++ +S GV +T+S +L+ ++ ++ + N + +YN+MI
Sbjct: 207 ELFEES-ESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGW 265
Query: 126 SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLD 185
S V+ + +LK+ E P+ + + L++
Sbjct: 266 SK------------------------LGEVEEMEKVLKEMVES---GFGPDCLSYSHLIE 298
Query: 186 ALCKCGLVDYAETICKRVKNKVK-PNANTYNIL------------GMQTLEEMIQMGHAP 232
L + G ++ + I +K+K P+AN YN + M+ M+ P
Sbjct: 299 GLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEP 358
Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY-----------AIMIVA 281
+ TY+ + K R V++A ++FE M ++G ++ ++ A M++
Sbjct: 359 NLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVI- 417
Query: 282 LVQNDRMEEC----------------FSLLGHMIN-------SGCLPDVSTYKEVLEGMC 318
Q R C F G ++N SG DV Y+ +++G+C
Sbjct: 418 -YQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLC 476
Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
+ G +E A +EE KG+ P+ Y+ L + + A +L+
Sbjct: 477 IIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLF 523
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 152/348 (43%), Gaps = 51/348 (14%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
P + NL++ ALCK VD A + + + + K P+ TY L +
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVL 243
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
L+EM G +P YN ID CK +T L + M KG P TY +I
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV---PNEVTYNTLIH 300
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA-------------------- 320
L ++++ SLL M++S C+P+ TY ++ G+
Sbjct: 301 GLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL 360
Query: 321 ---------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
GK EEA +M KG P+IV Y+ + LC +EA +
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420
Query: 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
RMI GC P+ TY+ L+ +F+ G + A + W EMDK GC+++ Y V+IDGL
Sbjct: 421 NRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGV 480
Query: 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
+V+EA + +++ G+K + S + L IG + A KL M
Sbjct: 481 GRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 3/219 (1%)
Query: 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN 285
+ M +P+ ++N I CK R V A ++F M + P TY ++ L +
Sbjct: 179 MNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCL---PDGYTYCTLMDGLCKE 235
Query: 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345
+R++E LL M + GC P Y +++G+C G + K ++ M KG P+ VTY
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTY 295
Query: 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405
N + LC D+A+ L RM+ C P+ TY LI+ + A M++
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355
Query: 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
RG + Y V+I GLF K EEA L ++ KG K
Sbjct: 356 RGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK 394
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 105/452 (23%), Positives = 181/452 (40%), Gaps = 86/452 (19%)
Query: 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLV---------------CSMLDYMKRNNKVFVP 154
N + L++NL+I L ++ + + C+++D + + ++
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERI--- 238
Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
D +++L + + P N+L+D LCK G L + + PN T
Sbjct: 239 -DEAVLLLDEMQSE---GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVT 294
Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
YN L + LE M+ P++ TY T I+ K R T+A L M
Sbjct: 295 YNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSME 354
Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
+G ++ Y+++I L + + EE SL M GC P++ Y +++G+C G
Sbjct: 355 ERGYHLNQ---HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREG 411
Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLK------------------------------- 350
K EA + L M G P+ TY+ +K
Sbjct: 412 KPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYS 471
Query: 351 VLCDNKNG----DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM--- 403
VL D G EA+ ++ +M+ +G P Y+ +I +G D A + +HEM
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQ 531
Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
++ DV TY +++DGL + A LL ++++G +++L LS +
Sbjct: 532 EEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSN- 590
Query: 464 GAIHKLSDHMRKFYNPVIARRLALNQKRVRIS 495
D R F ++ R L KR R+S
Sbjct: 591 -----SCDKGRSFLEELVVRLL----KRQRVS 613
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 1/211 (0%)
Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS-SPTAKTYAIMIVALVQNDRMEECFSL 294
++N+ ++ + + ++++ ++ SP ++ ++I AL + ++ +
Sbjct: 150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEV 209
Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
M CLPD TY +++G+C +++EA L+EM ++G P V YN + LC
Sbjct: 210 FRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269
Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
+ +L M GC P+ TYN LI G+ D A M C + T
Sbjct: 270 KGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329
Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
Y +I+GL + +A LL + +G L
Sbjct: 330 YGTLINGLVKQRRATDAVRLLSSMEERGYHL 360
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 16/213 (7%)
Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY----PPDIVTYNCFLKVLCDNKNG 358
C V ++ VL + G +F + + N P+ +++N +K LC +
Sbjct: 144 CKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFV 203
Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
D A+ ++ M E C P TY L+ + D A EM GC+ Y V+
Sbjct: 204 DRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVL 263
Query: 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM----- 473
IDGL + L++ + KG +++ + L + G L L + M
Sbjct: 264 IDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKC 323
Query: 474 -------RKFYNPVIARRLALNQKRVRISLREK 499
N ++ +R A + R+ S+ E+
Sbjct: 324 IPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 125/468 (26%), Positives = 207/468 (44%), Gaps = 45/468 (9%)
Query: 1 MTLAHLVSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIID 60
M L L S + + + V + + +L KVP +E D V ++ I+
Sbjct: 3 MILKPLSSHHVSNFRLSVSFLHSVALSD--AKVP------VEEEGDDAETVFRM----IN 50
Query: 61 NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK---IAFRFFMWAGHQDNYAHEPLA 117
SN ++++L S G+ L+ D + VL+R +F F+ +A + H +
Sbjct: 51 GSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFS 110
Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE- 176
+ M+ IL + ++F + +L KR ++ + + ++L + + V+ E
Sbjct: 111 LDTMLYILG----RNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVES 166
Query: 177 -------------INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------ 217
N LL LC+ + A + +K++ +P+ T+NIL
Sbjct: 167 FWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKS 226
Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
EEM G PD TYN+ ID +CK R + +A L + MR + T P T
Sbjct: 227 SEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEET---PDVIT 283
Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
Y +I L + ++ +L M GC PDV+ Y + C+A ++ +A K ++EM
Sbjct: 284 YTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMV 343
Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
KG P+ TYN F +VL + + LY RM+ C P+ Q+ LI M+ + D
Sbjct: 344 KKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVD 403
Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
A W +M +G V++D L D +KVEEA L E+V KG
Sbjct: 404 MAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKG 451
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 3/168 (1%)
Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
H + PD+ T+ +L G EEA F EEM KG PD+VTYN + V C ++
Sbjct: 204 HSLKHQFQPDLQTFNILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDR 260
Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
++A +L +M E P V TY +I +G+PD A E EM + GC DV Y
Sbjct: 261 EIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYN 320
Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
I ++ +A L++E+V KGL ++ + LS+ DLG
Sbjct: 321 AAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLG 368
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 16/216 (7%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVK-PNANTYNI----LGM--------Q 220
+P++ N L+D CK ++ A + +++ + + P+ TY LG+ +
Sbjct: 243 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 302
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
L+EM + G PD YN AI FC AR + +A L + M KG SP A TY +
Sbjct: 303 VLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGL---SPNATTYNLFFR 359
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
L + + + L M+ + CLP+ + +++ KV+ A + E+M KG+
Sbjct: 360 VLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGS 419
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
+ + L +LCD +EA + M+E G PS
Sbjct: 420 YSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPS 455
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 120/473 (25%), Positives = 209/473 (44%), Gaps = 72/473 (15%)
Query: 67 NMEKALDSLG----VPLTTDSVVGVLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNL 120
+ME LD + L+ + V VL+ + EK IA+ FF W+ Q Y H Y
Sbjct: 98 SMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVS 157
Query: 121 MIDILS-----------STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKI 169
++D+L+ S++ K +F + S + + ++ V+ LL + ++ E
Sbjct: 158 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKEN- 216
Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217
+P + N L++ L VD AE + + +++ ++KP+ TYN +
Sbjct: 217 --GIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 274
Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
M+ L +M GH D TY T I L++ M KG + P A ++
Sbjct: 275 KAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQV-PPHA--FS 331
Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
++I L + ++ E +++ +MI G P+V+ Y +++G +G VE+A + L M ++
Sbjct: 332 LVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDE 391
Query: 337 GYPPDIVTYNCFLKVLCDN---------------------------------KNG--DEA 361
G+ PD+VTY+ + LC N K G DEA
Sbjct: 392 GFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEA 451
Query: 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRGCAQDVDTYCVMID 420
RL+ M E GC YN LI + + + D A + M ++ GC Q V TY +++
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLS 511
Query: 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
G+F + EEA L + +++KG+ F + L + G + K+ D +
Sbjct: 512 GMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDEL 564
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 25/219 (11%)
Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242
L+D L K G VD AE + EEM + G D++ YN ID
Sbjct: 438 LIDGLGKAGRVDEAERL----------------------FEEMSEKGCTRDSYCYNALID 475
Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
F K R V EA LF+ M + T TY I++ + + R EE L MI+ G
Sbjct: 476 AFTKHRKVDEAIALFKRMEEEEGC--DQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKG 533
Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
P + ++ + G+CL+GKV A K L+E+ G D + + LC EA
Sbjct: 534 ITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEAC 592
Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
+L + E G + ++I+ ++G+ D A + H
Sbjct: 593 KLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMH 631
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
VS +++ G VEE +M G P + TYN + L D A R++
Sbjct: 187 VSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFE 246
Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
M P + TYN +I Y + G+ A E +M+ RG D TY MI + S
Sbjct: 247 VMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADS 306
Query: 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM-RKFYNPVIA 482
L +E+ KG+++P F + L G L + + ++M RK P +A
Sbjct: 307 DFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVA 363
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 189/416 (45%), Gaps = 32/416 (7%)
Query: 88 LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMI-DILSSTKYKAKQFRLVCSMLDYMK 146
L R + + A + F + P Y+L+ DI+ + +K F + +L ++K
Sbjct: 15 LLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELDQVLLHLK 74
Query: 147 RNNKVFVPVDVLL--------------MILKQYTEKIKVKTQPEINALNLLLDALCKCGL 192
+ ++ VP +++ L + E + + Q + +LN LL AL KCG
Sbjct: 75 TDTRI-VPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGE 133
Query: 193 VDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTA 240
++ + + KP+A TYNIL ++ +EM++ P T+ T
Sbjct: 134 LEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTL 193
Query: 241 IDTFCKARMVTEAADL-FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299
I CK V EA + + ++ G PT YA +I AL Q + F L
Sbjct: 194 IHGLCKDSRVKEALKMKHDMLKVYGV---RPTVHIYASLIKALCQIGELSFAFKLKDEAY 250
Query: 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359
D + Y ++ + AG+ E LEEM KG PD VTYN + C + +
Sbjct: 251 EGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSE 310
Query: 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
A R+ M+E G P V +YNM++ ++F + + + A + +M +RGC+ D +Y ++
Sbjct: 311 SANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVF 370
Query: 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
DGL + + EEA +L+E++ KG K + + +L +L G L + K+ + +
Sbjct: 371 DGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHR 426
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 189/430 (43%), Gaps = 41/430 (9%)
Query: 68 MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
+E L+ V L+ + VL++ +A F WA +Q + H YN +I+ L
Sbjct: 81 VETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLG- 139
Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT-------------Q 174
K KQF+L+ S++D MK K + + +I ++Y KVK +
Sbjct: 140 ---KIKQFKLIWSLVDDMK--AKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFK 194
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---GMQTL-------- 222
E + N +LD L K V A+ + ++K K +P+ +Y IL Q L
Sbjct: 195 MESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEV 254
Query: 223 -EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
EM G PD Y I+ CKA+ EA F M + P+ + +I
Sbjct: 255 NREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNC---KPSPHIFCSLING 311
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
L ++ + +SG + TY ++ C + ++E+AYK ++EM KG P+
Sbjct: 312 LGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPN 371
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
TY+ L L + EA +Y M C P+V TY +++ M+ D A + W
Sbjct: 372 ARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWD 428
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
EM +G + + +I L +K++EAC E+++ G++ P F S L Q +
Sbjct: 429 EMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMF-SRLKQ--TLL 485
Query: 462 DLGAIHKLSD 471
D G K++D
Sbjct: 486 DEGRKDKVTD 495
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 141/322 (43%), Gaps = 39/322 (12%)
Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP-VDVLLMILKQYTEKI 169
+ E +N M+D LS K++ + D MK+ K F P + ++L+ + +++
Sbjct: 193 FKMESSDFNRMLDTLS----KSRNVGDAQKVFDKMKK--KRFEPDIKSYTILLEGWGQEL 246
Query: 170 KV-------------KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY- 214
+ +P++ A ++++A CK + A ++ + KP+ + +
Sbjct: 247 NLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFC 306
Query: 215 ---NILG--------MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
N LG ++ E G + TYN + +C ++ + +A + MR K
Sbjct: 307 SLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLK 366
Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
G P A+TY I++ L++ R +E + + M C P VSTY+ ++ C ++
Sbjct: 367 GV---GPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERL 420
Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
+ A K +EM KG P + ++ + LC DEA + M++VG P ++ L
Sbjct: 421 DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRL 480
Query: 384 ISMYFELGEPDGAFETWHEMDK 405
+ G D + +MD+
Sbjct: 481 KQTLLDEGRKDKVTDLVVKMDR 502
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 138/307 (44%), Gaps = 45/307 (14%)
Query: 174 QPEINALNLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQ 220
P+ N+++ +LC G +D A + + + + + +P TY IL ++
Sbjct: 190 SPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALK 249
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG---------------- 264
++EM+ G PD FTYNT I CK MV A ++ + KG
Sbjct: 250 LMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Query: 265 ----------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
S P TY+I+I L ++ ++EE +LL M G PD
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
+Y ++ C G+++ A +FLE M + G PDIV YN L LC N D+AL ++G++
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
EVGC P+ +YN + S + G+ A EM G D TY MI L V
Sbjct: 430 GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489
Query: 429 EEACFLL 435
+EA LL
Sbjct: 490 DEAFELL 496
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 20/298 (6%)
Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--- 217
LK E + +P++ N ++ +CK G+VD A + + ++ K +P+ +YNIL
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRA 307
Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
G + + +M P+ TY+ I T C+ + EA +L + M+ KG T
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT-- 365
Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
P A +Y +I A + R++ L MI+ GCLPD+ Y VL +C GK ++A +
Sbjct: 366 -PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 424
Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
++G G P+ +YN L + + AL + M+ G P TYN +IS
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484
Query: 389 ELGEPDGAFETWHEMDKRGCA--QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
G D AFE +D R C V TY +++ G ++E+A +LE +V G +
Sbjct: 485 REGMVDEAFELL--VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCR 540
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%)
Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
M+ LE+ Q PD F YN I+ FCK + +A + + MR+K SP TY IM
Sbjct: 147 MEILEKFGQ----PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF---SPDTVTYNIM 199
Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
I +L +++ +L +++ C P V TY ++E L G V+EA K ++EM ++G
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259
Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
PD+ TYN ++ +C D A + + GC P V +YN+L+ G+ + +
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 319
Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
+M C +V TY ++I L K+EEA LL+ + KGL
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 25/269 (9%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
QP++ A N L++ CK +D A + R+++K +PD
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSK----------------------DFSPD 192
Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
TYN I + C + A + + + PT TY I+I A + ++E
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC---QPTVITYTILIEATMLEGGVDEALK 249
Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
L+ M++ G PD+ TY ++ GMC G V+ A++ + + KG PD+++YN L+ L
Sbjct: 250 LMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
+ +E +L +M C P+V TY++LI+ G+ + A M ++G D
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369
Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
+Y +I +++ A LE +++ G
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDG 398
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 1/155 (0%)
Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
E LL M+ G PDV ++++G + +A + +E + G PD+ YN +
Sbjct: 107 ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALI 165
Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
C D+A R+ RM P TYN++I G+ D A + +++ C
Sbjct: 166 NGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ 225
Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
V TY ++I+ V+EA L++E++++GLK
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 26/330 (7%)
Query: 176 EINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTL 222
++ +++D+ CK GL++ A ++ PN TY L +
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE-------------FMRTKGSTISS 269
E M+ G P+ TY+ ID CKA V +A +FE + +
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
P TY ++ ++ R+EE LL M GC P+ Y +++G+C GK++EA +
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
EM G+P + TY+ + K D A ++ +M+E C P+V Y +I +
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK 449
+G+ D A++ M+++GC +V TY MIDG K+E LLE + +KG+ Y
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
+ + G L H L + M++ + P
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWP 846
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 26/262 (9%)
Query: 200 CKRVKNKVK-----PNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
CKRV N + P+ +N L + L++M++ GH P YN I
Sbjct: 356 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIG 415
Query: 243 TFCKAR------MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
+ C + ++ A + M G ++ ++ L + E+ FS++
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFT---RCLCSAGKYEKAFSVIR 472
Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
MI G +PD STY +VL +C A K+E A+ EEM G D+ TY + C
Sbjct: 473 EMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532
Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
++A + + M EVGC P+V TY LI Y + + A E + M GC ++ TY
Sbjct: 533 LIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592
Query: 417 VMIDGLFDCSKVEEACFLLEEV 438
+IDG +VE+AC + E +
Sbjct: 593 ALIDGHCKAGQVEKACQIFERM 614
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 163/416 (39%), Gaps = 33/416 (7%)
Query: 57 AIIDNSNAYDNM-----EKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNY 111
AI D + D++ +K L L+ V+ VL R FF+WAG Q Y
Sbjct: 103 AIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVL-RLIARPSAVISFFVWAGRQIGY 161
Query: 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV--------LLMILK 163
H YN ++D++ + + + D K F+ V V + L+
Sbjct: 162 KHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALE 221
Query: 164 QYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK------NKVKPNANTYNIL 217
+ + +P + N L+ A K +D A I + + + Y++
Sbjct: 222 ELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLC 281
Query: 218 GMQTLEEMIQM----GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
+ E + + PD Y I C+A + EA D MR +T P
Sbjct: 282 KVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMR---ATSCLPNVV 338
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
TY+ ++ + ++ C +L M+ GC P + ++ C +G AYK L++M
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNG------DEALRLYGRMIEVGCWPSVQTYNMLISMY 387
G+ P V YN + +C +K+ D A + Y M+ G + +
Sbjct: 399 VKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCL 458
Query: 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
G+ + AF EM +G D TY +++ L + SK+E A L EE+ GL
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 51/311 (16%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA-NTYNIL------------GMQ 220
+P + L+D LCK G +D A+ + + P TY+ L +
Sbjct: 671 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 730
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
L +M++ AP+ Y ID CK EA L + M KG P TY MI
Sbjct: 731 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGC---QPNVVTYTAMID 787
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
++E C LL M + G P+ TY+ +++ C G ++ A+ LEEM +P
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847
Query: 341 DIVTYN--------------------------CFLKV---LCDNKNGDEALRLYGRMI-E 370
Y FL V L DN + L + R++ E
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907
Query: 371 VGCWPSV-----QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425
V + + TYN LI + + AF+ + EM K+G ++ ++C +I GLF
Sbjct: 908 VATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 967
Query: 426 SKVEEACFLLE 436
SK+ EA LL+
Sbjct: 968 SKISEALLLLD 978
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 135/340 (39%), Gaps = 38/340 (11%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL---------------- 217
P N L+ A C G YA + K+ VK P YNIL
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLL 429
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
+ EM+ G + ++ C A +A + M +G P TY
Sbjct: 430 DLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI---PDTSTY 486
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
+ ++ L +ME F L M G + DV TY +++ C AG +E+A K+ EM
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
G P++VTY + K A L+ M+ GC P++ TY+ LI + + G+ +
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606
Query: 396 AFETWHEMDKRGCAQDVD----------------TYCVMIDGLFDCSKVEEACFLLEEVV 439
A + + M DVD TY ++DG +VEEA LL+ +
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 666
Query: 440 NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
+G + +D+ + L +G L ++ M + P
Sbjct: 667 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 706
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 5/182 (2%)
Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
LG + + P STY +++ A +++ A EM D T CF LC
Sbjct: 223 LGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCK 282
Query: 355 NKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
EAL L +E + P Y LIS E + A + + M C +V
Sbjct: 283 VGKWREALTL----VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338
Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
TY ++ G + ++ +L ++ +G + F+S + GD +KL M
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398
Query: 474 RK 475
K
Sbjct: 399 VK 400
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/441 (24%), Positives = 189/441 (42%), Gaps = 53/441 (12%)
Query: 87 VLQRFQFEE--KIAFRFFMWAGHQDNYAHEPLAYNLMIDILS------STKYKAKQFRLV 138
V++R + E +A FF + + + H PL + +MI L+ S +Y +Q +L
Sbjct: 46 VVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQ 105
Query: 139 ---CSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195
CS D V+ V + ++ + + P + N +LD L +
Sbjct: 106 GFHCSE-DLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 164
Query: 196 AETICKRVK-NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242
+ + +K + +PN TYN+L + L EM G PD +Y T I
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224
Query: 243 TFCKARMVTEAADL---------------------------FEFMRTKGSTISSPTAKTY 275
+ C+ +V E +L FE MR SP +Y
Sbjct: 225 SMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISY 284
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
+ +I L + ++E FS L M+ GC P++ T +++G L G +A +M
Sbjct: 285 STLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIR 344
Query: 336 K-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
G P++V YN ++ C + N +A+ ++ M E+GC P+++TY LI+ + + G D
Sbjct: 345 GFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLD 404
Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
GA W++M GC +V Y M++ L SK +EA L+E + + F++++
Sbjct: 405 GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFI 464
Query: 455 MQLSVIGDLGAIHKLSDHMRK 475
L G L K+ M +
Sbjct: 465 KGLCDAGRLDWAEKVFRQMEQ 485
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 137/326 (42%), Gaps = 50/326 (15%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
P+ + ++ ++C+ GLV + +R + P + YN L + +
Sbjct: 214 PDAVSYTTVISSMCEVGLVKEGRELAERFE----PVVSVYNALINGLCKEHDYKGAFELM 269
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS-----TISS-------- 269
EM++ G +P+ +Y+T I+ C + + A M +G T+SS
Sbjct: 270 REMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLR 329
Query: 270 --------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309
P Y ++ + + + S+ HM GC P++ T
Sbjct: 330 GTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRT 389
Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
Y ++ G G ++ A +M G P++V Y ++ LC + EA L M
Sbjct: 390 YGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMS 449
Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKV 428
+ C PSV T+N I + G D A + + +M+++ C ++ TY ++DGL +++
Sbjct: 450 KENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRI 509
Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYL 454
EEA L E+ +G++ +++ L
Sbjct: 510 EEAYGLTREIFMRGVEWSSSTYNTLL 535
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 131/309 (42%), Gaps = 18/309 (5%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
QP + A N L+ C G + A ++ ++ PN TY L +
Sbjct: 349 QPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVY 408
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
+M+ G P+ Y ++ C+ EA L E M + S PT + +
Sbjct: 409 IWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 468
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
+ D E+ F + C P++ TY E+L+G+ A ++EEAY E+ +G
Sbjct: 469 DAGRLDWAEKVFRQMEQ--QHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEW 526
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
TYN L C+ AL+L G+M+ G P T NM+I Y + G+ + A +
Sbjct: 527 SSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML 586
Query: 401 H--EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458
+R DV +Y +I GL + E+ LLE +++ G+ +P S L+
Sbjct: 587 DLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGI-VPSIATWSVLINCF 645
Query: 459 VIGDLGAIH 467
++ D+ H
Sbjct: 646 ILDDIVRAH 654
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 28/222 (12%)
Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMG 229
K P + N + LC G +D+AE + +M Q
Sbjct: 450 KENCAPSVPTFNAFIKGLCDAGRLDWAEKV----------------------FRQMEQQH 487
Query: 230 HAPDNF-TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
P N TYN +D KA + EA L + +G SS TY ++
Sbjct: 488 RCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSS---STYNTLLHGSCNAGLP 544
Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE--EMGNKGYPPDIVTYN 346
L+G M+ G PD T ++ C GK E A + L+ G + + PD+++Y
Sbjct: 545 GIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYT 604
Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
+ LC + ++ + L RMI G PS+ T+++LI+ +
Sbjct: 605 NVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFI 646
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 174/392 (44%), Gaps = 45/392 (11%)
Query: 67 NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
+ EKAL+ L + + V +L+ E + +FF WAG + N+ H+ Y +I L
Sbjct: 79 DAEKALEVLKLKVDHRLVRSILE-IDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLE 137
Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
+ + +R + ++ RN V V VL ++K A
Sbjct: 138 EARLYGEMYRTIQEVV----RNTYVSVSPAVLSELVK----------------------A 171
Query: 187 LCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLEE------------MIQMGHA-P 232
L + +V A ++ + K K KP ++TYN + + ++E M G P
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231
Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
D TY+ I ++ K A LF+ M+ PT K Y ++ + ++E+
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMK---DNCMQPTEKIYTTLLGIYFKVGKVEKAL 288
Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
L M +GC P V TY E+++G+ AG+V+EAY F ++M G PD+V N + +L
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348
Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE-MDKRGCAQD 411
+E ++ M C P+V +YN +I FE +W + M +
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408
Query: 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
TY ++IDG ++VE+A LLEE+ KG
Sbjct: 409 EFTYSILIDGYCKTNRVEKALLLLEEMDEKGF 440
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 17/262 (6%)
Query: 175 PEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
P + + N ++ AL K + + + K + V P+ TY+IL +
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALL 430
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
LEEM + G P Y + I+ KA+ A +LF+ ++ +SS + YA+MI
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSS---RVYAVMIK 487
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
+ ++ E L M N G PDV Y ++ GM AG + EA L +M G
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
DI ++N L A+ ++ + G P TYN L+ + G + A
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMM 607
Query: 401 HEMDKRGCAQDVDTYCVMIDGL 422
EM +G D TY ++D +
Sbjct: 608 REMKDKGFEYDAITYSSILDAV 629
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 17/304 (5%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNILGMQTLE 223
Y + ++ P++ LN L++ L K G V+ + + + P +YN + E
Sbjct: 326 YKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFE 385
Query: 224 EMIQMGH-------------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP 270
+ +P FTY+ ID +CK V +A L E M KG P
Sbjct: 386 SKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF---PP 442
Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
Y +I AL + R E L + + Y +++ GK+ EA
Sbjct: 443 CPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLF 502
Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
EM N+G PD+ YN + + +EA L +M E GC + ++N++++ +
Sbjct: 503 NEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFART 562
Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
G P A E + + G D TY ++ EEA ++ E+ +KG + +
Sbjct: 563 GVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622
Query: 451 DSYL 454
S L
Sbjct: 623 SSIL 626
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/455 (24%), Positives = 197/455 (43%), Gaps = 45/455 (9%)
Query: 33 VPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAY--DNMEKALDSLGVPLTTDSVVGVLQR 90
VP C +++ S +D++ + +++N++ ++E ALD G+ + + V + R
Sbjct: 52 VPDSTCTPPQQNTVSKTDLSTISN-LLENTDVVPGSSLESALDETGIEPSVELVHALFDR 110
Query: 91 FQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNK 150
+ F WA + + P ++ +++ L KA++F + S++ R+++
Sbjct: 111 LSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLC----KAREFEIAWSLVFDRVRSDE 166
Query: 151 V--FVPVDVLLMILKQYTEKIKV-----------------KTQPEINALNLLLDALCKCG 191
V D ++++++Y V K+ E+ L +LLDALCK G
Sbjct: 167 GSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEG 226
Query: 192 LVDYAETICKRVKNKVK----PNANTYNIL------------GMQTLEEMIQMGHAPDNF 235
V A +R+ + P+ +NIL + EEM M P
Sbjct: 227 HVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVV 286
Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
TY T I+ +C+ R V A ++ E M+ I+ + +I L + R+ E ++
Sbjct: 287 TYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEIN---FMVFNPIIDGLGEAGRLSEALGMM 343
Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
P + TY +++ C AG + A K L+ M +G P TYN F K +
Sbjct: 344 ERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKH 403
Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
+E + LY ++IE G P TY++++ M E G+ A + EM RG D+ T
Sbjct: 404 NKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTT 463
Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
++I L +EEA + V +G+ Y F
Sbjct: 464 TMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITF 498
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
++ P I N L+ CK G + A I K + + V P TYN G
Sbjct: 350 ESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEG 409
Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
M ++I+ GH+PD TY+ + C+ ++ A + + M+ +G P T ++
Sbjct: 410 MNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGI---DPDLLTTTML 466
Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
I L + + +EE F + + G +P T+K + G+ G + A +
Sbjct: 467 IHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRL 517
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 123/293 (41%), Gaps = 30/293 (10%)
Query: 198 TICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256
TI ++N V P ++ + L +E +++ HA D + M+ + +
Sbjct: 72 TISNLLENTDVVPGSSLESALDETGIEPSVELVHA--------LFDRLSSSPMLLHS--V 121
Query: 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---GCLPDVSTYKEV 313
F++ K SP+ + ++ +L + E +SL+ + S L T+ +
Sbjct: 122 FKWAEMKPGFTLSPS--LFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVL 179
Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPP------DIVTYNCFLKVLCDNKNGDEA---LRL 364
+ AG V++A + E + Y P ++ L LC + EA L
Sbjct: 180 IRRYARAGMVQQAIRAFE--FARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLER 237
Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
G ++ PSV+ +N+L++ +F + A + W EM V TY +I+G
Sbjct: 238 IGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCR 297
Query: 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477
+V+ A +LEE+ +++ + F+ + L G+ G + + M +F+
Sbjct: 298 MRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGL---GEAGRLSEALGMMERFF 347
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 179/403 (44%), Gaps = 35/403 (8%)
Query: 98 AFRFFMWAGHQDNYAHE-PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
+ FF WA +D+Y H+ P YN MID+ K +QF L ++D MK N V + ++
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSG----KVRQFDLAWHLIDLMKSRN-VEISIE 187
Query: 157 VLLMILKQY------TEKIKVKTQ-------PEINALNLLLDALCKCGLVDYAETICKRV 203
+++++Y +E + + P+ A ++++ L + A++ +
Sbjct: 188 TFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL 247
Query: 204 KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
K++ +P+ Y L + +EM G P+ +TY+ ID C+ ++
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQIS 307
Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
A D+F M G +P A T+ ++ V+ R E+ + M GC PD TY
Sbjct: 308 RAHDVFADMLDSGC---APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYN 364
Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
++E C +E A K L M K + T+N + + ++ + A R+Y +M+E
Sbjct: 365 FLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEA 424
Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
C P+ TYN+L+ M+ D + EMD + +V+TY +++ A
Sbjct: 425 KCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNA 484
Query: 432 CFLLEEVVNKGLKLPYRK-FDSYLMQLSVIGDLGAIHKLSDHM 473
L +E+V + P ++ L QL G L +L + M
Sbjct: 485 YKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 29/266 (10%)
Query: 94 EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY------MKR 147
E + F+ AG + N Y+++ID L ++ + MLD +
Sbjct: 273 EAEKVFKEMKLAGIEPNV----YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328
Query: 148 NN--KVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKC-GLVDYAETICKRVK 204
NN +V V +L+ Y + K+ +P+ N L++A C+ L + + + +K
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIK 388
Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
K + NA+T+N + + +M++ P+ TYN + F ++
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDM 448
Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYK 311
+ + M K P TY +++ + L M+ CL P +S Y+
Sbjct: 449 VLKMKKEMDDKEV---EPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYE 505
Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKG 337
VL + AG++++ + +E+M KG
Sbjct: 506 MVLAQLRRAGQLKKHEELVEKMIQKG 531
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 48/333 (14%)
Query: 176 EINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
++ + N++++ LC+C V + K +K +P+ T + L + +
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS------------- 269
+M +MG PD YNT ID CK +V +A +LF+ M G +
Sbjct: 163 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCS 222
Query: 270 -------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
P T+ +I V+ + E L M PDV TY
Sbjct: 223 GRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTY 282
Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
++ G+C+ G+V+EA + L+ M KG PD+VTYN + C +K DE +L+ M +
Sbjct: 283 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 342
Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
G TYN +I YF+ G PD A E + MD R ++ TY +++ GL +VE+
Sbjct: 343 RGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEK 399
Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
A L E + ++L ++ + + IG++
Sbjct: 400 ALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 56/354 (15%)
Query: 138 VCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197
V S+++ + N+VF +D++ ++ ++ +P++ N ++D CK GLV+ A
Sbjct: 142 VSSLINGFCQGNRVFDAIDLV-------SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 194
Query: 198 TICKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTF 244
+ R+ ++ V+ +A TYN L + + +M+ P+ T+ ID F
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 254
Query: 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL 304
K +EA L+E M + P TY +I L + R++E +L M+ GCL
Sbjct: 255 VKEGKFSEAMKLYEEMTRR---CVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 311
Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV------------- 351
PDV TY ++ G C + +V+E K EM +G D +TYN ++
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371
Query: 352 -------------------LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
LC N ++AL L+ M + + TYN++I ++G
Sbjct: 372 FSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGN 431
Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
+ A++ + + +G DV +Y MI G + +++ L ++ GL LP
Sbjct: 432 VEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL-LP 484
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 144/316 (45%), Gaps = 14/316 (4%)
Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186
S KA +F +C +++ N V VP T++ + + EI+ ++ +
Sbjct: 8 SIASKANKFLNLC----LLQKGNPVIVPFISRFWGRTFSTKRSSMNLEEEIDLFCKMIQS 63
Query: 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
+VD+++ + K K+K N ++ + E+ +GH D ++YN I+ C+
Sbjct: 64 RPLPSIVDFSKVLSKIAKSK-----NYDLVISLFHHMEVCGIGH--DLYSYNIVINCLCR 116
Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
A + M G P T + +I Q +R+ + L+ M G PD
Sbjct: 117 CSRFVIALSVVGKMMKFGY---EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPD 173
Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
V Y +++G C G V +A + + M G D VTYN + LC + +A RL
Sbjct: 174 VVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 233
Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
M+ P+V T+ +I ++ + G+ A + + EM +R DV TY +I+GL
Sbjct: 234 DMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHG 293
Query: 427 KVEEACFLLEEVVNKG 442
+V+EA +L+ +V KG
Sbjct: 294 RVDEAKQMLDLMVTKG 309
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 3/250 (1%)
Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
+MIQ P ++ + K++ LF M G +Y I+I L
Sbjct: 59 KMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGI---GHDLYSYNIVINCLC 115
Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
+ R S++G M+ G PDV T ++ G C +V +A + +M G+ PD+V
Sbjct: 116 RCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVV 175
Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
YN + C ++A+ L+ RM G TYN L++ G A +M
Sbjct: 176 IYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDM 235
Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
R +V T+ +ID K EA L EE+ + + ++S + L + G +
Sbjct: 236 VMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRV 295
Query: 464 GAIHKLSDHM 473
++ D M
Sbjct: 296 DEAKQMLDLM 305
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%)
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
+EE L MI S LP + + +VL + + + M G D+ +YN
Sbjct: 50 LEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNI 109
Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
+ LC AL + G+M++ G P V T + LI+ + + A + +M++ G
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169
Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
DV Y +IDG V +A L + + G++ ++S + L G
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229
Query: 468 KLSDHM 473
+L M
Sbjct: 230 RLMRDM 235
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 162/357 (45%), Gaps = 59/357 (16%)
Query: 157 VLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTY- 214
+LLM LK YT P++ + + +++ C+ G +D + + +K K +KPN+ Y
Sbjct: 269 LLLMELKGYT--------PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYG 320
Query: 215 NILGM-----------QTLEEMIQMGHAPDNFTYNTAIDTFCK---------------AR 248
+I+G+ + EMI+ G PD Y T ID FCK +R
Sbjct: 321 SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380
Query: 249 MVT--------------------EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
+T EA LF M KG P + T+ +I + M
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL---EPDSVTFTELINGYCKAGHM 437
Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
++ F + HMI +GC P+V TY +++G+C G ++ A + L EM G P+I TYN
Sbjct: 438 KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 497
Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
+ LC + N +EA++L G G TY L+ Y + GE D A E EM +G
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557
Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465
+ T+ V+++G +E+ LL ++ KG+ F+S + Q + +L A
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKA 614
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 3/241 (1%)
Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
G+ PD +Y+T ++ +C+ + + L E M+ KG P + Y +I L + ++
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL---KPNSYIYGSIIGLLCRICKL 332
Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
E MI G LPD Y +++G C G + A KF EM ++ PD++TY
Sbjct: 333 AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392
Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
+ C + EA +L+ M G P T+ LI+ Y + G AF + M + GC
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452
Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
+ +V TY +IDGL ++ A LL E+ GL+ ++S + L G++ K
Sbjct: 453 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Query: 469 L 469
L
Sbjct: 513 L 513
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 25/292 (8%)
Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT 221
+ + I+ P + L+D LCK G +D A +
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN----------------------EL 478
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
L EM ++G P+ FTYN+ ++ CK+ + EA L G +++ T TY ++ A
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG--LNADTV-TYTTLMDA 535
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
++ M++ +L M+ G P + T+ ++ G CL G +E+ K L M KG P+
Sbjct: 536 YCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
T+N +K C N A +Y M G P +TY L+ + + A+ +
Sbjct: 596 ATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQ 655
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
EM +G + V TY V+I G K EA + +++ +GL FD +
Sbjct: 656 EMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 16/284 (5%)
Query: 175 PEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
P++ ++ C+ G +V+ + + ++P++ T+ L +
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
MIQ G +P+ TY T ID CK + A +L M G P TY ++
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL---QPNIFTYNSIVNG 500
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
L ++ +EE L+G +G D TY +++ C +G++++A + L+EM KG P
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
IVT+N + C + ++ +L M+ G P+ T+N L+ Y A +
Sbjct: 561 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 620
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
+M RG D TY ++ G ++EA FL +E+ KG +
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 664
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 90/200 (45%)
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
+Y I+I + Q R++E LL M G PDV +Y V+ G C G++++ +K +E M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
KG P+ Y + +LC EA + MI G P Y LI + + G+
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
A + ++EM R DV TY +I G + EA L E+ KGL+ F
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 454 LMQLSVIGDLGAIHKLSDHM 473
+ G + ++ +HM
Sbjct: 428 INGYCKAGHMKDAFRVHNHM 447
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/449 (21%), Positives = 180/449 (40%), Gaps = 37/449 (8%)
Query: 43 ESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFF 102
E +++V KL A + + ++L TD ++ VL + + + ++ FF
Sbjct: 57 EFVHQITNVIKLRRA--------EPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFF 108
Query: 103 MWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN-NKVFVPV-DVLLM 160
WA + + E L + + + +S K Q L+ S + K N FV D+L+
Sbjct: 109 DWARSRRDSNLESLCIVIHLAV-ASKDLKVAQ-SLISSFWERPKLNVTDSFVQFFDLLVY 166
Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK----VKPNANTY-- 214
K + +V ++ L GL+ A + +++ N + N Y
Sbjct: 167 TYKDWGSDPRV--------FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLT 218
Query: 215 --------NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
+ E ++G + +YN I C+ + EA L M KG T
Sbjct: 219 RLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYT 278
Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
P +Y+ ++ + +++ + L+ M G P+ Y ++ +C K+ EA
Sbjct: 279 ---PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
+ EM +G PD V Y + C + A + + M P V TY +IS
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 395
Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
+ ++G+ A + +HEM +G D T+ +I+G +++A + ++ G
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
Query: 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
+ + + L GDL + ++L M K
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWK 484
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 18/295 (6%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQT 221
P + +L+ +LC A + K ++ +KPN +TY +L +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
L +M++ G P+ TYN I+ +CK M+ +A D+ E M ++ SP +TY +I
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL---SPNTRTYNELIKG 437
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+++ + + +L M+ LPDV TY +++G C +G + AY+ L M ++G PD
Sbjct: 438 YCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
TY + LC +K +EA L+ + + G P+V Y LI Y + G+ D A
Sbjct: 497 QWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456
+M + C + T+ +I GL K++EA L E++V GL+ P D+ L+
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ-PTVSTDTILIH 610
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 120/461 (26%), Positives = 208/461 (45%), Gaps = 38/461 (8%)
Query: 33 VPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQ 92
V L+ + +E SDS+S +L +I+ N + + +L S+ V + S V L
Sbjct: 45 VSPLLRNLPEEESDSMSVPHRLL-SILSKPNWHKS--PSLKSM-VSAISPSHVSSLFSLD 100
Query: 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF 152
+ K A F W Y H +Y ++ +L + Y F++ M+
Sbjct: 101 LDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDAL 160
Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNA 211
+D+ + K E+ ++K + I N LL++L + GLVD + + + +++KV PN
Sbjct: 161 YVLDLCRKMNKD--ERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNI 218
Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
TYN + Q + ++++ G PD FTY + I +C+ + + A +F
Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278
Query: 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319
M KG + Y +I L R++E L M + C P V TY +++ +C
Sbjct: 279 MPLKGCRRNEVA---YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335
Query: 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379
+ + EA ++EM G P+I TY + LC ++A L G+M+E G P+V T
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395
Query: 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
YN LI+ Y + G + A + M+ R + + TY +I G + S V +A +L +++
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG-YCKSNVHKAMGVLNKML 454
Query: 440 NKGLKLP--------------YRKFDSYLMQLSVIGDLGAI 466
+ + LP FDS LS++ D G +
Sbjct: 455 ERKV-LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 15/257 (5%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL-----------GMQTL 222
P + N L++ CK G+++ A + + +++ K+ PN TYN L M L
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL 450
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
+M++ PD TYN+ ID C++ A L M +G P TY MI +L
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV---PDQWTYTSMIDSL 507
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
++ R+EE L + G P+V Y +++G C AGKV+EA+ LE+M +K P+
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
+T+N + LC + EA L +M+++G P+V T +LI + G+ D A+ + +
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQ 627
Query: 403 MDKRGCAQDVDTYCVMI 419
M G D TY I
Sbjct: 628 MLSSGTKPDAHTYTTFI 644
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 68/369 (18%)
Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GM 219
K P N L+ CK + + K ++ KV P+ TYN L
Sbjct: 423 KLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482
Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
+ L M G PD +TY + ID+ CK++ V EA DLF+ + KG +P Y +I
Sbjct: 483 RLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV---NPNVVMYTALI 539
Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE-------------- 325
+ +++E +L M++ CLP+ T+ ++ G+C GK++E
Sbjct: 540 DGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ 599
Query: 326 ---------------------AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
AY ++M + G PD TY F++ C +A +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659
Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
+M E G P + TY+ LI Y +LG+ + AF+ M GC T+ +I L +
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719
Query: 425 -------------CS-----KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
C+ + + LLE++V + + ++ ++ + +G+L
Sbjct: 720 MKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVA 779
Query: 467 HKLSDHMRK 475
K+ DHM++
Sbjct: 780 EKVFDHMQR 788
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 72/321 (22%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQT------ 221
+K+ QP ++ +L+ L K G D+A + ++ + + KP+A+TY +QT
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF-IQTYCREGR 652
Query: 222 -------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
+ +M + G +PD FTY++ I + A D+ + MR G P+ T
Sbjct: 653 LLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGC---EPSQHT 709
Query: 275 YAIMIVALVQ----------------NDRME--ECFSLLGHMINSGCLPDVSTYKEVLEG 316
+ +I L++ ++ ME LL M+ P+ +Y++++ G
Sbjct: 710 FLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILG 769
Query: 317 MCLAGKVEEAYKFLEEMG-NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
+C G + A K + M N+G P + +N L C K +EA ++ MI VG P
Sbjct: 770 ICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLP 829
Query: 376 SVQTYNMLISMYFELGEPD-------------------------------GAFETWHE-- 402
+++ +LI ++ GE + G E ++E
Sbjct: 830 QLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELF 889
Query: 403 --MDKRGCAQDVDTYCVMIDG 421
M+K GC TY ++I+G
Sbjct: 890 NVMEKNGCKFSSQTYSLLIEG 910
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 138/293 (47%), Gaps = 16/293 (5%)
Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---- 217
K Y + I P++ LN +D + K G + + + +K + P+A +Y+IL
Sbjct: 503 KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGL 562
Query: 218 -----GMQTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
+T E M + G D YN ID FCK V +A L E M+TKG
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGF---E 619
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
PT TY +I L + DR++E + L + +V Y +++G G+++EAY
Sbjct: 620 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLI 679
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
LEE+ KG P++ T+N L L + +EAL + M E+ C P+ TY +LI+ +
Sbjct: 680 LEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739
Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
+ + + AF W EM K+G +Y MI GL + EA L + G
Sbjct: 740 VRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 118/466 (25%), Positives = 196/466 (42%), Gaps = 52/466 (11%)
Query: 40 VFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAF 99
F+ + +V+D+ + E +A E L +L + V+GVL+R + + A
Sbjct: 28 TFEGNRQTVNDICNVLETGPWGPSA----ENTLSALSFKPQPEFVIGVLRRLK-DVNRAI 82
Query: 100 RFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK------------- 146
+F W + H P +YN ++ +++ + + F + +L M
Sbjct: 83 EYFRWYERRTELPHCPESYNSLLLVMA----RCRNFDALDQILGEMSVAGFGPSVNTCIE 138
Query: 147 ------RNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200
+ NK+ DV+ M+ K K +P +A L+ A D T+
Sbjct: 139 MVLGCVKANKLREGYDVVQMMR-------KFKFRPAFSAYTTLIGAFSAVNHSDMMLTLF 191
Query: 201 KRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247
++++ +P + + L + L+EM D YN ID+F K
Sbjct: 192 QQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKV 251
Query: 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
V A F + G P TY MI L + +R++E + H+ + +P
Sbjct: 252 GKVDMAWKFFHEIEANG---LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308
Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367
Y ++ G AGK +EAY LE KG P ++ YNC L L DEAL+++
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE 368
Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427
M + P++ TYN+LI M G+ D AFE M K G +V T +M+D L K
Sbjct: 369 MKKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427
Query: 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
++EAC + EE+ K F S + L +G + +K+ + M
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 183/439 (41%), Gaps = 85/439 (19%)
Query: 97 IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVD 156
+A++FF + + + Y MI +L KA + M +++++N +V
Sbjct: 256 MAWKFFHEI-EANGLKPDEVTYTSMIGVLC----KANRLDEAVEMFEHLEKNRRVPCTYA 310
Query: 157 VLLMIL---------KQYT--EKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKRVK 204
MI+ + Y+ E+ + K P + A N +L L K G VD A + + +K
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370
Query: 205 NKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
PN +TYNIL ID C+A + A +L + M+ G
Sbjct: 371 KDAAPNLSTYNIL-----------------------IDMLCRAGKLDTAFELRDSMQKAG 407
Query: 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324
P +T IM+ L ++ +++E ++ M C PD T+ +++G+ G+V+
Sbjct: 408 LF---PNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVD 464
Query: 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
+AYK E+M + + + Y +K ++ ++ ++Y MI C P +Q N +
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524
Query: 385 SMYFELGEPDGA-----------------------------------FETWHEMDKRGCA 409
F+ GEP+ +E ++ M ++GC
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584
Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469
D Y ++IDG C KV +A LLEE+ KG + + + SVI L I +L
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE------PTVVTYGSVIDGLAKIDRL 638
Query: 470 SDHMRKFYNPVIARRLALN 488
D + ++R+ LN
Sbjct: 639 -DEAYMLFEEAKSKRIELN 656
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 4/227 (1%)
Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN-DRMEECFSLLGHMINSGCLPDVS 308
V A + F + + P + ++++A +N D +++ +LG M +G P V+
Sbjct: 78 VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQ---ILGEMSVAGFGPSVN 134
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
T E++ G A K+ E Y ++ M + P Y + + D L L+ +M
Sbjct: 135 TCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQM 194
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
E+G P+V + LI + + G D A EM D+ Y V ID KV
Sbjct: 195 QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKV 254
Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
+ A E+ GLK + S + L L ++ +H+ K
Sbjct: 255 DMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK 301
>sp|Q9FNG8|PP366_ARATH Putative pentatricopeptide repeat-containing protein At5g06400,
mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3
SV=1
Length = 1030
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 169/391 (43%), Gaps = 26/391 (6%)
Query: 58 IIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLA 117
++ +S ++ ++AL+ V T + VV VL+ + + RFF W G ++ Y H A
Sbjct: 621 VLSSSRDWERTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEA 680
Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE----KIKVKT 173
YN+ I + K F+ + S+ M+R + D +++ QY I ++T
Sbjct: 681 YNMSIKVAGC----GKDFKQMRSLFYEMRRQG-CLITQDTWAIMIMQYGRTGLTNIAIRT 735
Query: 174 QPEINALNLL-LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP 232
E+ + L+ + KC + +C++ V+ T+ EMI+ G P
Sbjct: 736 FKEMKDMGLIPSSSTFKCLIT----VLCEKKGRNVEEATRTFR--------EMIRSGFVP 783
Query: 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292
D + C+ +A + + I P Y+I I AL + ++EE
Sbjct: 784 DRELVQDYLGCLCEVGNTKDAKSCLDSL----GKIGFPVTVAYSIYIRALCRIGKLEEAL 839
Query: 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352
S L L D TY ++ G+ G +++A + M G P + Y +
Sbjct: 840 SELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLIVYF 899
Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
K ++ L +M C PSV TY +I Y LG+ + A+ + M++RG + D
Sbjct: 900 FKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDF 959
Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
TY I+ L K E+A LL E+++KG+
Sbjct: 960 KTYSKFINCLCQACKSEDALKLLSEMLDKGI 990
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/417 (20%), Positives = 176/417 (42%), Gaps = 34/417 (8%)
Query: 39 KVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIA 98
KV E D S V +++ + +ME L+ L + V VL+R +A
Sbjct: 114 KVLHEEVD-FSPVVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLA 172
Query: 99 FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRN--NKVFVPVD 156
RFF W +D ++H YN M+ I +A+ +V ++ M++N +K
Sbjct: 173 MRFFNWVKQKDGFSHRVGIYNTMLSIAG----EARNLDMVDELVSEMEKNGCDKDIRTWT 228
Query: 157 VLLMILKQ----------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206
+L+ + + + + K + + A N+++ +LC G D A K + K
Sbjct: 229 ILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEK 288
Query: 207 -VKPNANTYNIL-----------GMQTL-EEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253
+ TY +L +Q++ ++M+++ ++ + + +FC + + EA
Sbjct: 289 GITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEA 348
Query: 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313
+L ++ K + AK + I++ L + +RM + ++ M L D + Y +
Sbjct: 349 LELIRELKNKEMCLD---AKYFEILVKGLCRANRMVDALEIVDIMKRRK-LDDSNVYGII 404
Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
+ G V +A + E + G PP + TY ++ L K ++ L+ MIE G
Sbjct: 405 ISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGI 464
Query: 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
P +++ + A++ + M+++G +Y + + L S+ +E
Sbjct: 465 EPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDE 521
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 27/262 (10%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK------------VKPNANTYNILGMQTL 222
E +A LL + C G + A + + +KNK VK ++ +
Sbjct: 327 SEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEI 386
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
++++ D+ Y I + + V++A + FE ++ G P TY ++ L
Sbjct: 387 VDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGR---PPRVSTYTEIMQHL 443
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
+ + E+ +L MI +G PD V+ G +V EA+K M KG P
Sbjct: 444 FKLKQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTW 503
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH- 401
+Y+ F+K LC + DE ++++ +M ++ +IS E +G E H
Sbjct: 504 KSYSIFVKELCRSSRYDEIIKIFNQMHASKIVIRDDIFSWVISSM----EKNGEKEKIHL 559
Query: 402 --EMDKRGCAQDVDTYCVMIDG 421
E+ KR ++YC ++G
Sbjct: 560 IKEIQKRS-----NSYCDELNG 576
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%)
Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
L+ M +GC D+ T+ ++ A K+ + E+M G+ D YN ++ LC
Sbjct: 211 LVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLC 270
Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
GD AL Y M+E G ++TY ML+ + + D +M + + D
Sbjct: 271 IAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHD 330
Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451
+ ++ K++EA L+ E+ NK + L + F+
Sbjct: 331 AFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFE 368
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
+ + M ++G P Y + I F K + + + + + M + P+ TY
Sbjct: 873 ALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESC---EPSVVTYTA 929
Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337
MI + ++EE ++ +M G PD TY + + +C A K E+A K L EM +KG
Sbjct: 930 MICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKG 989
Query: 338 YPPDIVTYNCFLKVLCDNKNGDEAL 362
P + + L N+ G L
Sbjct: 990 IAPSTINFRTVFYGL--NREGKHDL 1012
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 1/149 (0%)
Query: 326 AYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI 384
A +F + K G+ + YN L + + +N D L M + GC ++T+ +LI
Sbjct: 172 AMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILI 231
Query: 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
S+Y + + + +M K G D Y +MI L + + A +E++ KG+
Sbjct: 232 SVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKGIT 291
Query: 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
R + L ++ + + ++D M
Sbjct: 292 FGLRTYKMLLDCIAKSEKVDVVQSIADDM 320
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 3/195 (1%)
Query: 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296
YNT + +AR + +L M G +T+ I+I + ++ + +
Sbjct: 192 YNTMLSIAGEARNLDMVDELVSEMEKNGC---DKDIRTWTILISVYGKAKKIGKGLLVFE 248
Query: 297 HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
M SG D + Y ++ +C+AG+ + A +F +EM KG + TY L + ++
Sbjct: 249 KMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSE 308
Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
D + M+ + + L+ + G+ A E E+ + D +
Sbjct: 309 KVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFE 368
Query: 417 VMIDGLFDCSKVEEA 431
+++ GL +++ +A
Sbjct: 369 ILVKGLCRANRMVDA 383
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 16/273 (5%)
Query: 183 LLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
L+ LC G D A+ + + + + P+ T++ L + EMI G
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
APD TYN+ ID FCK + EA +F+ M +KG P TY+I+I + + R++
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC---EPDIVTYSILINSYCKAKRVD 402
Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
+ L + + G +P+ TY ++ G C +GK+ A + +EM ++G PP +VTY L
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462
Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
LCDN ++AL ++ +M + + YN++I + D A+ + + +G
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 522
Query: 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
DV TY VMI GL + EA L ++ G
Sbjct: 523 PDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 139/277 (50%), Gaps = 16/277 (5%)
Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
++++D+LCK G D A ++ ++ K +K + TY+ L G + L EMI
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
PD T++ ID F K + EA +L+ M T+G +P TY +I + +
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI---APDTITYNSLIDGFCKENC 365
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
+ E + M++ GC PD+ TY ++ C A +V++ + E+ +KG P+ +TYN
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
+ C + + A L+ M+ G PSV TY +L+ + GE + A E + +M K
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
+ Y ++I G+ + SKV++A L + +KG+K
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 522
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 16/287 (5%)
Query: 151 VFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKP 209
VFV LL + Y E I P+ N L+D CK + A + + +K +P
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383
Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
+ TY+IL GM+ E+ G P+ TYNT + FC++ + A +LF
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 443
Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
+ M ++G P+ TY I++ L N + + + M S + Y ++ GM
Sbjct: 444 QEMVSRGV---PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500
Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
C A KV++A+ + +KG PD+VTYN + LC + EA L+ +M E GC P
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560
Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
TYN+LI + + E EM G + D T ++ID L D
Sbjct: 561 FTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 607
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 45/315 (14%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTY------------N 215
+++K +P++ ++ L++ LC G V A + R V+ +P+ TY +
Sbjct: 167 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226
Query: 216 ILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-----STISS- 269
L + +M + Y+ ID+ CK +A LF M KG T SS
Sbjct: 227 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286
Query: 270 --------------------------PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
P T++ +I V+ ++ E L MI G
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346
Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
PD TY +++G C + EA + + M +KG PDIVTY+ + C K D+ +R
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 406
Query: 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423
L+ + G P+ TYN L+ + + G+ + A E + EM RG V TY +++DGL
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466
Query: 424 DCSKVEEACFLLEEV 438
D ++ +A + E++
Sbjct: 467 DNGELNKALEIFEKM 481
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 3/215 (1%)
Query: 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288
G D +T I+ +C+ + + A F + P T++ ++ R+
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFA---FSVLGRAWKLGYEPDTITFSTLVNGFCLEGRV 156
Query: 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348
E +L+ M+ PD+ T ++ G+CL G+V EA ++ M G+ PD VTY
Sbjct: 157 SEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV 216
Query: 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
L LC + N AL L+ +M E SV Y+++I + G D A ++EM+ +G
Sbjct: 217 LNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGI 276
Query: 409 AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
DV TY +I GL + K ++ +L E++ + +
Sbjct: 277 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 7/238 (2%)
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA--IMI 279
E MIQ P +N C A T+ DL KG ++ Y IMI
Sbjct: 58 FESMIQSRPLPTPIDFNR----LCSAVARTKQYDLV-LGFCKGMELNGIEHDMYTMTIMI 112
Query: 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339
+ ++ FS+LG G PD T+ ++ G CL G+V EA ++ M
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172
Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399
PD+VT + + LC EAL L RM+E G P TY +++ + G A +
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232
Query: 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
+ +M++R V Y ++ID L ++A L E+ KG+K + S + L
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 45/228 (19%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGM----------Q 220
+P+I ++L+++ CK VD + + + +K + PN TYN +LG +
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS------------ 268
+EM+ G P TY +D C + +A ++FE M+ T+
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501
Query: 269 --------------------SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
P TY +MI L + + E L M GC PD
Sbjct: 502 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDF 561
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356
TY ++ + + + +EEM G+ D T + +L D +
Sbjct: 562 TYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRR 609
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 17/286 (5%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
+P + + N++++ LC+ G + + + + + TYN L +
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
EM++ G P TY + I + CKA + A + + MR +G P +TY ++
Sbjct: 332 MHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC---PNERTYTTLVD 388
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
Q M E + +L M ++G P V TY ++ G C+ GK+E+A LE+M KG P
Sbjct: 389 GFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSP 448
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
D+V+Y+ L C + + DEALR+ M+E G P TY+ LI + E A + +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY 508
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
EM + G D TY +I+ +E+A L E+V KG+ LP
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV-LP 553
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 130/272 (47%), Gaps = 24/272 (8%)
Query: 181 NLLLDALCKCG-----LVDYAETICKRVKNKVKPNANTYNIL------------GMQTLE 223
N L+ CK G LV +AE + ++ + P+ TY L M+ L+
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEML----RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369
Query: 224 EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283
+M G P+ TY T +D F + + EA + M G SP+ TY +I
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF---SPSVVTYNALINGHC 426
Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
+ME+ ++L M G PDV +Y VL G C + V+EA + EM KG PD +
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486
Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
TY+ ++ C+ + EA LY M+ VG P TY LI+ Y G+ + A + +EM
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546
Query: 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
++G DV TY V+I+GL S+ EA LL
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 4/259 (1%)
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
+EM++ +P+ FTYN I FC A + A LF+ M TKG P TY +I
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCL---PNVVTYNTLIDG 249
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+ ++++ F LL M G P++ +Y V+ G+C G+++E L EM +GY D
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
VTYN +K C N +AL ++ M+ G PSV TY LI + G + A E
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
+M RG + TY ++DG + EA +L E+ + G +++ + V G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429
Query: 462 DL-GAIHKLSDHMRKFYNP 479
+ AI L D K +P
Sbjct: 430 KMEDAIAVLEDMKEKGLSP 448
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 133/283 (46%), Gaps = 17/283 (6%)
Query: 175 PEINALNLLLDALCKCGL-VDYAETICKR-VKNKVKPNANTYNIL------------GMQ 220
P + + N +LDA + + +AE + K ++++V PN TYNIL +
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
++M G P+ TYNT ID +CK R + + L M KG P +Y ++I
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG---LEPNLISYNVVIN 283
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
L + RM+E +L M G D TY +++G C G +A EM G P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
++TY + +C N + A+ +M G P+ +TY L+ + + G + A+
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
EM+ G + V TY +I+G K+E+A +LE++ KGL
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 143/312 (45%), Gaps = 16/312 (5%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM----------QT 221
P + N L+D CK +D + + + K ++PN +YN++ G+
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV 297
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
L EM + G++ D TYNT I +CK +A + M G T P+ TY +I +
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT---PSVITYTSLIHS 354
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+ + M L M G P+ TY +++G G + EAY+ L EM + G+ P
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
+VTYN + C ++A+ + M E G P V +Y+ ++S + + D A
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
EM ++G D TY +I G + + +EAC L EE++ GL + + + + G
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534
Query: 462 DLGAIHKLSDHM 473
DL +L + M
Sbjct: 535 DLEKALQLHNEM 546
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 141/337 (41%), Gaps = 47/337 (13%)
Query: 164 QYTEKIKVKTQ-PEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL---- 217
++ ++++V+ P L+D + G ++ A + + + N P+ TYN L
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
+ LE+M + G +PD +Y+T + FC++ V EA + M KG
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI---K 482
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
P TY+ +I + R +E L M+ G PD TY ++ C+ G +E+A +
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS---- 385
EM KG PD+VTY+ + L EA RL ++ PS TY+ LI
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSN 602
Query: 386 --------------MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
M + E D FE+ M + D Y +MI G + +A
Sbjct: 603 IEFKSVVSLIKGFCMKGMMTEADQVFES---MLGKNHKPDGTAYNIMIHGHCRAGDIRKA 659
Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468
L +E+V G L ++VI + A+HK
Sbjct: 660 YTLYKEMVKSGF---------LLHTVTVIALVKALHK 687
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 1/176 (0%)
Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK-VEEAYKF 329
T+ + +++ + + +++ S++ G +P V +Y VL+ + + + A
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
+EM P++ TYN ++ C N D AL L+ +M GC P+V TYN LI Y +
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
L + D F+ M +G ++ +Y V+I+GL +++E F+L E+ +G L
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL 308
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 181/401 (45%), Gaps = 58/401 (14%)
Query: 67 NMEKALDSLGVP----LTTDSVVGVLQRFQFEEK-----IAFRFFMWAGHQDNYAHEPLA 117
N + ALD L V L + +VG+L+ F+ K +A++FF+W G Q+N+ H
Sbjct: 95 NTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANC 154
Query: 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI 177
Y+L++ I + + +++ +C ++D E IK
Sbjct: 155 YHLLMKIFA----ECGEYKAMCRLID-----------------------EMIKDGYPTTA 187
Query: 178 NALNLLLDALCKCGLVDYAETICKR-VKNKV---KPNANTYN-----ILGMQ-------T 221
NLL+ C CG A + ++ +K+K +P ++YN +LG++
Sbjct: 188 CTFNLLI---CTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWV 244
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
E+M++ G PD TYN + F R+ + L+ + SP TY I++
Sbjct: 245 YEQMLEDGFTPDVLTYNIVM--FANFRL-GKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 301
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
L ++ +LL HM G P V + +++G+ AGK+E F++E G PD
Sbjct: 302 LATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPD 361
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
+V Y + ++A ++ M E G P+V TYN +I + G+ A
Sbjct: 362 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLK 421
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
EM+ RGC + Y +++ L + KV EA +++++V KG
Sbjct: 422 EMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 6/220 (2%)
Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
F+ G TA Y +++ + + L+ MI G T+ ++ C
Sbjct: 139 FVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLI---C 195
Query: 319 LAGKVEEAYKFLEEMGNK---GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
G+ A +E+ Y P +YN L L K +Y +M+E G P
Sbjct: 196 TCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTP 255
Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
V TYN+++ F LG+ D + EM K G + D+ TY +++ L +K A LL
Sbjct: 256 DVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLL 315
Query: 436 EEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
+ G++ F + + LS G L A D K
Sbjct: 316 NHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVK 355
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 23/305 (7%)
Query: 140 SMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199
S+L+ R ++V+ D L M + + + + +P + N ++D LCK VD A +
Sbjct: 156 SLLNGFCRGDRVY---DALYM----FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDL 208
Query: 200 CKRV-KNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246
R+ K+ + P+ TYN L + + M + PD FT+N ID K
Sbjct: 209 LNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268
Query: 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306
V+EA + +E M + P TY+++I L R++E + G M++ GC PD
Sbjct: 269 EGRVSEAEEFYEEMIRRSL---DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPD 325
Query: 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366
V TY ++ G C + KVE K EM +G + VTY ++ C + A ++
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFR 385
Query: 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426
RM+ G P++ TYN+L+ + G+ + A +M K G D+ TY ++I G+
Sbjct: 386 RMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAG 445
Query: 427 KVEEA 431
+V +A
Sbjct: 446 EVADA 450
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 19/301 (6%)
Query: 181 NLLLDALCKCGLVDYAET-ICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
N+LL+ C+C + A + + K +K +P+ T+ L + ++M+
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
MG+ P+ YNT ID CK++ V A DL M G P TY +I L + R
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI---GPDVVTYNSLISGLCSSGR 236
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
+ ++ M PDV T+ +++ G+V EA +F EEM + PDIVTY+
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
+ LC DEA ++G M+ GC+P V TY++LI+ Y + + + + + EM +RG
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356
Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIH 467
++ TY ++I G K+ A + +V G+ + +Y + L + D G I
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV---HPNIITYNVLLHGLCDNGKIE 413
Query: 468 K 468
K
Sbjct: 414 K 414
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 16/225 (7%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPNANTYNIL------ 217
Y E I+ P+I +LL+ LC +D AE + V P+ TY+IL
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCK 338
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
GM+ EM Q G + TY I +C+A + A ++F M G P
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV---HPN 395
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
TY +++ L N ++E+ +L M +G D+ TY ++ GMC AG+V +A+
Sbjct: 396 IITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYC 455
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376
+ +G PDI TY + L EA L+ +M E G P+
Sbjct: 456 SLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 79/170 (46%)
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
T I++ + ++ S LG MI G P + T+ +L G C +V +A ++M
Sbjct: 118 TCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQM 177
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
GY P++V YN + LC +K D AL L RM + G P V TYN LIS G
Sbjct: 178 VGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRW 237
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
A M KR DV T+ +ID +V EA EE++ + L
Sbjct: 238 SDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%)
Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
++++ L HM+ LP ++ + +L + K + E+M G P ++ T N
Sbjct: 61 KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120
Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
L C AL G+MI++G PS+ T+ L++ + A + +M
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180
Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
G +V Y +IDGL +V+ A LL + G+ ++S + L G
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240
Query: 467 HKLSDHMRK 475
++ M K
Sbjct: 241 TRMVSCMTK 249
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 138/303 (45%), Gaps = 17/303 (5%)
Query: 150 KVFVPVDVLLMI-LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-V 207
+V + +V M+ Y E +K P + +L+D L K G A+ + + + +
Sbjct: 170 RVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGI 229
Query: 208 KPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255
PN TY IL + EM G+ PD+ +N +D FCK + EA +
Sbjct: 230 SPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFE 289
Query: 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315
L G + + Y+ +I L + R + F L +M+ PD+ Y +++
Sbjct: 290 LLRLFEKDGFVLG---LRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQ 346
Query: 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375
G+ AGK+E+A K L M +KG PD YN +K LC +E L M E +P
Sbjct: 347 GLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFP 406
Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
T+ +LI G A E + E++K GC+ V T+ +IDGL +++EA LL
Sbjct: 407 DACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLL 466
Query: 436 EEV 438
++
Sbjct: 467 HKM 469
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 12/230 (5%)
Query: 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
QTLEE+ G + D++ + I + K M +A + F M+ P TY +++
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDC---RPDVFTYNVIL 169
Query: 280 VALVQNDRMEECFSLLG-----HMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
+++ EE F +L M+ C P++ T+ +++G+ G+ +A K ++M
Sbjct: 170 RVMMR----EEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMT 225
Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
+G P+ VTY + LC + D+A +L+ M G +P +N L+ + +LG
Sbjct: 226 GRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMV 285
Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
AFE +K G + Y +IDGLF + +A L ++ K +K
Sbjct: 286 EAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIK 335
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 146/381 (38%), Gaps = 63/381 (16%)
Query: 68 MEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127
+E AL+ L VP + +++ + + + ++ FRFF+WA + ++ L+ID+LS
Sbjct: 47 IEPALEPL-VPFLSKNIITSVIKDEVNRQLGFRFFIWA-SRRERLRSRESFGLVIDMLSE 104
Query: 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
C + +T E+ + + +D+
Sbjct: 105 DN--------GCDLY----------------------------WQTLEELKSGGVSVDSY 128
Query: 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGM-----QTLEEMIQMGHAPDNFTYNTAID 242
C C L+ + Y +GM ++ M + PD FTYN +
Sbjct: 129 CFCVLI------------------SAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILR 170
Query: 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302
+ + A F SP T+ I++ L + R + + M G
Sbjct: 171 VMMREEVFFMLA--FAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRG 228
Query: 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEAL 362
P+ TY ++ G+C G ++A K EM G PD V +N L C EA
Sbjct: 229 ISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAF 288
Query: 363 RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
L + G ++ Y+ LI F AFE + M K+ D+ Y ++I GL
Sbjct: 289 ELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGL 348
Query: 423 FDCSKVEEACFLLEEVVNKGL 443
K+E+A LL + +KG+
Sbjct: 349 SKAGKIEDALKLLSSMPSKGI 369
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 42/291 (14%)
Query: 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166
+D + Y+ +ID L + + F L +ML K+N K P +L IL Q
Sbjct: 295 EKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANML---KKNIK---PDIILYTILIQGL 348
Query: 167 EKI-KVK-------------TQPEINALNLLLDALCKCGLVDYAETI-CKRVKNKVKPNA 211
K K++ P+ N ++ ALC GL++ ++ + + + P+A
Sbjct: 349 SKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDA 408
Query: 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259
T+ IL + E+ + G +P T+N ID CK+ + EA L
Sbjct: 409 CTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHK 468
Query: 260 MRTKGST-----ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314
M +S +++ M V++ + + + L H ++G PD+ +Y ++
Sbjct: 469 MEVGRPASLFLRLSHSGNRSFDTM----VESGSILKAYRDLAHFADTGSSPDIVSYNVLI 524
Query: 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365
G C AG ++ A K L + KG PD VTYN + L +EA +L+
Sbjct: 525 NGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLF 575
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 60/259 (23%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---GMQT 221
+TE K P + N L+D LCK G + A + +++ V A+ + L G ++
Sbjct: 431 FTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME--VGRPASLFLRLSHSGNRS 488
Query: 222 LEEMIQ----------------MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
+ M++ G +PD +YN I+ FC+A + A L ++ KG
Sbjct: 489 FDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGL 548
Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSL------------------------------- 294
SP + TY +I L + R EE F L
Sbjct: 549 ---SPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWSCRKRKVLVAF 605
Query: 295 ---LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351
+ ++ CL D T E+ E G+ E A + L E+ + + Y +L
Sbjct: 606 NLWMKYLKKISCLDD-ETANEI-EQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIG 663
Query: 352 LCDNKNGDEALRLYGRMIE 370
LC + EAL ++ + E
Sbjct: 664 LCQSGRFHEALMVFSVLRE 682
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/477 (24%), Positives = 208/477 (43%), Gaps = 54/477 (11%)
Query: 7 VSPTEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYD 66
++P+ + A+ I K+L + ++P E+ D S +++ I+ D
Sbjct: 16 LNPSSSSIAIFSTFI--KNLSTASEQLP--------ETLDEYSQSEEIWNVIVGRDGDRD 65
Query: 67 NMEKALDSLG-------VPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYN 119
+ + L V L+ V +L RF+ + + A WA + H AY+
Sbjct: 66 SEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYD 125
Query: 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK------QYTEKIKV-- 171
+ +DIL KAK++ + ++ M R +K+ V ++ + I++ ++ E + +
Sbjct: 126 MAVDILG----KAKKWDRMKEFVERM-RGDKL-VTLNTVAKIMRRFAGAGEWEEAVGIFD 179
Query: 172 -----KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
+ ++NLLLD LCK V+ A + ++K+ + PNA+T+NI
Sbjct: 180 RLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANR 239
Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
+ T++EM G P +Y T I +C+ + ++ M G S P + T
Sbjct: 240 VEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANG---SPPNSIT 296
Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK-FLEEM 333
Y ++ +L EE + M SGC PD Y ++ + AG++EEA + F EM
Sbjct: 297 YTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEM 356
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGE 392
G + TYN + + C + D+A+ L M C P V TY L+ F+ G+
Sbjct: 357 PELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGD 416
Query: 393 PDGAFETWHEM-DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
+ EM K + D TY +I L + E A L EE++++ + +R
Sbjct: 417 VVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 473
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 43/378 (11%)
Query: 38 CKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL-GVPLTT-DSVVGVLQRF---- 91
CK SSD+ D+A I+ + +D M++ ++ + G L T ++V +++RF
Sbjct: 114 CKGHKHSSDAY-DMAV---DILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAG 169
Query: 92 QFEEKIA-FRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML-DYMKRNN 149
++EE + F G + N + NL++D L K + +Q R+V L ++ N
Sbjct: 170 EWEEAVGIFDRLGEFGLEKNTE----SMNLLLDTLCKEK-RVEQARVVLLQLKSHITPNA 224
Query: 150 KVF-------VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK-CGLVDYAETICK 201
F + + L E +P + + ++ C+ + E + +
Sbjct: 225 HTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSE 284
Query: 202 RVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
N PN+ TY + ++ M + G PD+ YN I T +A
Sbjct: 285 MEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344
Query: 250 VTEAADLFEF-MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDV 307
+ EA +F M G +I++ T Y MI +D ++ LL M +S C PDV
Sbjct: 345 LEEAERVFRVEMPELGVSINTST---YNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDV 401
Query: 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYG 366
TY+ +L G V E K L+EM K + D TY ++ LC + A L+
Sbjct: 402 HTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFE 461
Query: 367 RMIEVGCWPSVQTYNMLI 384
MI P +T +L+
Sbjct: 462 EMISQDITPRHRTCLLLL 479
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 133/275 (48%), Gaps = 16/275 (5%)
Query: 181 NLLLDALCKCGLVD-YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
N+L+ C G D A+ + +K K+ PN T+++L + +EMI
Sbjct: 302 NILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 361
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
G APD TY + ID FCK + +A + + M +KG P +T+ I+I + +R
Sbjct: 362 RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC---DPNIRTFNILINGYCKANR 418
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
+++ L M G + D TY +++G C GK+ A + +EM ++ PP+IVTY
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478
Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
L LCDN ++AL ++ ++ + + YN++I + D A++ + + +G
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538
Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
V TY +MI GL + EA L ++ G
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 181/377 (48%), Gaps = 30/377 (7%)
Query: 112 AHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-FVPV---------DVLL 159
H+P + N +++ L + +A+ L+ M++Y + N V + PV L
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL- 217
M L + E+ +K ++++D LCK G +D A + ++ K + N TYNIL
Sbjct: 248 MELLRKMEERNIKLDAV--KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI 305
Query: 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266
G + L +MI+ P+ T++ ID+F K + EA +L + M +G
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI- 364
Query: 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326
+P TY +I + + +++ ++ M++ GC P++ T+ ++ G C A ++++
Sbjct: 365 --APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422
Query: 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
+ +M +G D VTYN ++ C+ + A L+ M+ P++ TY +L+
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
+ GE + A E + +++K D+ Y ++I G+ + SKV++A L + KG+K
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542
Query: 447 YRKFDSYLMQLSVIGDL 463
+ ++ + L G L
Sbjct: 543 VKTYNIMIGGLCKKGPL 559
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 120/273 (43%), Gaps = 16/273 (5%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
+ E I P+ L+D CK +D A + + +K PN T+NIL
Sbjct: 356 HKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 415
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
G++ +M G D TYNT I FC+ + A +LF+ M ++ P
Sbjct: 416 ANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV---PPN 472
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
TY I++ L N E+ + + S D+ Y ++ GMC A KV++A+
Sbjct: 473 IVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 532
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
+ KG P + TYN + LC EA L+ +M E G P TYN+LI + G
Sbjct: 533 SLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDG 592
Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
+ + + E+ + G + D T ++ID L D
Sbjct: 593 DATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 625
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 91/170 (53%)
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
T +IMI + ++ FS +G +I G P+ T+ ++ G+CL G+V EA + ++ M
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
G+ PD++T N + LC + EA+ L +M+E GC P+ TY ++++ + G+
Sbjct: 185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
A E +M++R D Y ++IDGL ++ A L E+ KG+
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 294
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 10/240 (4%)
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
++M G A + +T + I+ FC+ R + A F M P T++ +I L
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLA---FSAMGKIIKLGYEPNTITFSTLINGL 168
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
R+ E L+ M+ G PD+ T ++ G+CL+GK EA +++M G P+
Sbjct: 169 CLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 228
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
VTY L V+C + A+ L +M E Y+++I + G D AF ++E
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 288
Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
M+ +G ++ TY ++I G + + ++ LL +++ RK + ++ SV+ D
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-------RKINPNVVTFSVLID 341
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
N L+ C+ G ++ A+ + + V KV PN TY IL ++ E++ +
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
D YN I C A V +A DLF + KG P KTY IMI L +
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV---KPGVKTYNIMIGGLCKKGP 558
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
+ E L M G PD TY ++ G ++ K +EE+ G+ D T
Sbjct: 559 LSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKM 618
Query: 348 FLKVLCDNK 356
+ +L D +
Sbjct: 619 VIDMLSDGR 627
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 95/222 (42%)
Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
+A D + R + PT ++ + A+ + + + +L M G ++ T
Sbjct: 68 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127
Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
++ C K+ A+ + ++ GY P+ +T++ + LC EAL L RM+E+
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187
Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
G P + T N L++ G+ A +M + GC + TY +++ + + A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
Query: 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
LL ++ + +KL K+ + L G L L + M
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 148/290 (51%), Gaps = 16/290 (5%)
Query: 181 NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQTLEEMIQ 227
++++D LCK G +D A + ++ K K + TYN L G + L +MI+
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
+P+ T++ ID+F K + EA L + M +G +P TY +I + +R
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI---APNTITYNSLIDGFCKENR 383
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
+EE ++ MI+ GC PD+ T+ ++ G C A ++++ + EM +G + VTYN
Sbjct: 384 LEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNT 443
Query: 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
++ C + + A +L+ M+ P + +Y +L+ + GE + A E + +++K
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503
Query: 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457
D+ Y ++I G+ + SKV++A L + KG+KL R ++ + +L
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL 553
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 137/282 (48%), Gaps = 16/282 (5%)
Query: 174 QPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL------------GMQ 220
+ +I N L+ C G D A+ + +K K+ PN T+++L Q
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
L+EM+Q G AP+ TYN+ ID FCK + EA + + M +KG P T+ I+I
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC---DPDIMTFNILIN 411
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
+ +R+++ L M G + + TY +++G C +GK+E A K +EM ++ P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
DIV+Y L LCDN ++AL ++G++ + + Y ++I + D A++ +
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
+ +G D Y +MI L + +A L ++ +G
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 29/328 (8%)
Query: 134 QFRLVCSMLDYMKRNNKVFVPV------DVLLMILKQYTEKIKVKTQPEINALNLLLDAL 187
Q R + +++D+ N++F + +++L + KQ K I L+++++
Sbjct: 81 QSRPLPTVIDF----NRLFSAIAKTKQYELVLALCKQMESK---GIAHSIYTLSIMINCF 133
Query: 188 CKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDN 234
C+C + YA T+ K +K +P+ +N L ++ ++ M++MGH P
Sbjct: 134 CRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTL 193
Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
T NT ++ C V++A L + M G P TY ++ + ++ + L
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGF---QPNEVTYGPVLNVMCKSGQTALAMEL 250
Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
L M D Y +++G+C G ++ A+ EM KG+ DI+TYN + C+
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310
Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
D+ +L MI+ P+V T+++LI + + G+ A + EM +RG A + T
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370
Query: 415 YCVMIDGLFDCSKVEEACFLLEEVVNKG 442
Y +IDG +++EEA +++ +++KG
Sbjct: 371 YNSLIDGFCKENRLEEAIQMVDLMISKG 398
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/408 (21%), Positives = 175/408 (42%), Gaps = 30/408 (7%)
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI------ 161
+D PL + + L S K KQ+ LV ++ M+ + +MI
Sbjct: 77 RDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRC 136
Query: 162 ------LKQYTEKIKVKTQPEINALNLLLDALC-KCGLVDYAETICKRVKNKVKPNANTY 214
+ +K+ +P+ N LL+ LC +C + + E + + V+ KP T
Sbjct: 137 RKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITL 196
Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
N L + ++ M++ G P+ TY ++ CK+ A +L M
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256
Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
+ + A Y+I+I L ++ ++ F+L M G D+ TY ++ G C AG+
Sbjct: 257 RNIKLD---AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
++ K L +M + P++VT++ + EA +L M++ G P+ TYN
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373
Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
LI + + + A + M +GC D+ T+ ++I+G +++++ L E+ +G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM--RKFYNPVIARRLALN 488
+ +++ + G L KL M R+ +++ ++ L+
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLD 481
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 16/292 (5%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
+ + I+ + P + N L A+ K + +CK++++K + + T +I+
Sbjct: 76 FRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCR 135
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
T+ +++++G+ PD +NT ++ C V+EA +L + M G PT
Sbjct: 136 CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH---KPT 192
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
T ++ L N ++ + L+ M+ +G P+ TY VL MC +G+ A + L
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
+M + D V Y+ + LC + + D A L+ M G + TYN LI + G
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAG 312
Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
D + +M KR + +V T+ V+ID K+ EA LL+E++ +G+
Sbjct: 313 RWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI 364
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 127/305 (41%), Gaps = 45/305 (14%)
Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL---- 217
K + IK K P + ++L+D+ K G + A+ + K + + + PN TYN L
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
+Q ++ MI G PD T+N I+ +CKA + + +LF M +G ++
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 438
Query: 270 PTAKT--------------------------------YAIMIVALVQNDRMEECFSLLGH 297
T T Y I++ L N +E+ + G
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 498
Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
+ S D+ Y ++ GMC A KV++A+ + KG D YN + LC +
Sbjct: 499 IEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDS 558
Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
+A L+ +M E G P TYN+LI + + A E EM G DV T +
Sbjct: 559 LSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKM 618
Query: 418 MIDGL 422
+I+ L
Sbjct: 619 VINML 623
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 38/246 (15%)
Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
N +Y + + +A DLF R + PT + + A+ + + E +
Sbjct: 53 NLSYRDKLSSGLVGIKADDAVDLF---RDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLA 109
Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
L M + G + T ++ C K+ A+ + ++ GY PD V +N L LC
Sbjct: 110 LCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC 169
Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLI----------------------------- 384
EAL L RM+E+G P++ T N L+
Sbjct: 170 LECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEV 229
Query: 385 ------SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
++ + G+ A E +M++R D Y ++IDGL ++ A L E+
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 439 VNKGLK 444
KG K
Sbjct: 290 EIKGFK 295
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 16/286 (5%)
Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
K +P + N ++D LCK +D A + K ++ K ++PN TY+ L
Sbjct: 251 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310
Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
+ L +MI+ PD FT++ ID F K + EA L++ M + P+ TY+ +
Sbjct: 311 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI---DPSIVTYSSL 367
Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
I +DR++E + M++ C PDV TY +++G C +VEE + EM +G
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427
Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
+ VTYN ++ L + D A ++ M+ G P++ TYN L+ + G+ + A
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487
Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
+ + + + TY +MI+G+ KVE+ L + KG+K
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 134/290 (46%), Gaps = 25/290 (8%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
QP++ ++++ LCK G D A +N+L +M Q P
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLA-----------------FNLL-----NKMEQGKLEPG 255
Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
YNT ID CK + + +A +LF+ M TKG P TY+ +I L R +
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASR 312
Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
LL MI PDV T+ +++ GK+ EA K +EM + P IVTY+ + C
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372
Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
+ DEA +++ M+ C+P V TYN LI + + + E + EM +RG +
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
TY ++I GLF + A + +E+V+ G+ +++ L L G L
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP-NANTYNIL------ 217
+ E +K + P I + LL A+ K D ++ ++++N P N TY+IL
Sbjct: 69 FGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCR 128
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
+ L +M+++G+ P+ T ++ ++ +C ++ ++EA L + M G P
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY---QPN 185
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
T+ +I L +++ E +L+ M+ GC PD+ TY V+ G+C G + A+ L
Sbjct: 186 TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
+M P ++ YN + LC K+ D+AL L+ M G P+V TY+ LIS G
Sbjct: 246 KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 305
Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
A +M +R DV T+ +ID K+ EA L +E+V + +
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 126/286 (44%), Gaps = 16/286 (5%)
Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICK-RVKNKVKPN 210
FV L+ K Y E +K P I + L++ C +D A+ + + V P+
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
TYN L GM+ EM Q G + TYN I +A A ++F+
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 455
Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
M + G P TY ++ L +N ++E+ + ++ S P + TY ++EGMC
Sbjct: 456 EMVSDGV---PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
AGKVE+ + + KG PD+V YN + C + +EA L+ M E G P+
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
YN LI G+ + + E EM G A D T ++ + L D
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 618
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 30/355 (8%)
Query: 114 EP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY------ 165
EP L YN +ID L K+ L M R N V L+ L Y
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN--VVTYSSLISCLCNYGRWSDA 310
Query: 166 ----TEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
++ I+ K P++ + L+DA K G LV+ + + VK + P+ TY+ L
Sbjct: 311 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING 370
Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
Q E M+ PD TYNT I FCK + V E ++F M +G +
Sbjct: 371 FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430
Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
+ T Y I+I L Q + + M++ G P++ TY +L+G+C GK+E+A
Sbjct: 431 TVT---YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487
Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
E + P I TYN ++ +C ++ L+ + G P V YN +IS +
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547
Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
G + A + EM + G + Y +I E + L++E+ + G
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 1/207 (0%)
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
TY+I+I + ++ ++LG M+ G P++ T +L G C + ++ EA +++M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
GY P+ VT+N + L + EA+ L RM+ GC P + TY ++++ + G+
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
D AF ++M++ V Y +IDGL +++A L +E+ KG++ + S
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297
Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
+ L G A LSD + + NP
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINP 324
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 3/253 (1%)
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
E+M +G +++TY+ I+ FC+ + A + M G P T + ++
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY---EPNIVTLSSLLNGY 161
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
+ R+ E +L+ M +G P+ T+ ++ G+ L K EA ++ M KG PD+
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 221
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
VTY + LC + D A L +M + P V YN +I + D A + E
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
M+ +G +V TY +I L + + +A LL +++ + + F + + G
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 463 LGAIHKLSDHMRK 475
L KL D M K
Sbjct: 342 LVEAEKLYDEMVK 354
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 16/189 (8%)
Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
N+L+ L + G D A+ I K V + V PN TYN L M E + +
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
P +TYN I+ CKA V + DLF + KG P Y MI +
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV---KPDVVAYNTMISGFCRKGS 551
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
EE +L M G LP+ Y ++ G E + + ++EM + G+ D T
Sbjct: 552 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 611
Query: 348 FLKVLCDNK 356
+L D +
Sbjct: 612 VTNMLHDGR 620
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
++++ +L G M+ S P + + ++L + K + E+M N G P + TY+
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
+ C AL + G+M+++G P++ T + L++ Y A +M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
G + T+ +I GLF +K EA L++ +V KG
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 184/412 (44%), Gaps = 37/412 (8%)
Query: 26 LQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVP----LTT 81
L+S +V S+ + + ++ S S V L +D S N + LD L V L
Sbjct: 55 LRSIDREVISVRSRFLESANHSASRV--LVTLQLDESGF--NSKSVLDELNVRVSGLLVR 110
Query: 82 DSVVGVLQRFQFEEK-----IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFR 136
+ +VG+L+ ++ K +A+RFF+W+G Q+ + H +Y+L++ I + +R
Sbjct: 111 EVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWR 170
Query: 137 LVCSML-DYMKRNNKVF-------VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188
LV M+ D + F + + Q+ + +P ++ N +L++L
Sbjct: 171 LVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLL 230
Query: 189 KCGLVDYAETICKR-VKNKVKPNANTYNILGM------------QTLEEMIQMGHAPDNF 235
E + K+ +++ P+ TYNIL + +EM + G +PD++
Sbjct: 231 GVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSY 290
Query: 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295
TYN + K A M+ G P+ Y +I L + +E C L
Sbjct: 291 TYNILLHILGKGNKPLAALTTLNHMKEVG---IDPSVLHYTTLIDGLSRAGNLEACKYFL 347
Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
M+ +GC PDV Y ++ G ++G++++A + EM KG P++ TYN ++ LC
Sbjct: 348 DEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMA 407
Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407
EA L M GC P+ Y+ L+S + G+ A + EM K+G
Sbjct: 408 GEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%)
Query: 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330
T +Y +++ + + + L+ M+ G T+ ++ AG ++A
Sbjct: 148 TVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQF 207
Query: 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390
+ Y P +YN L L K +Y +M+E G P V TYN+L+ + L
Sbjct: 208 MKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRL 267
Query: 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450
G+ D + EM + G + D TY +++ L +K A L + G+ +
Sbjct: 268 GKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHY 327
Query: 451 DSYLMQLSVIGDLGAIHKLSDHMRK 475
+ + LS G+L A D M K
Sbjct: 328 TTLIDGLSRAGNLEACKYFLDEMVK 352
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 16/276 (5%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
QP++ ++++ LCK G +D A ++ K++ + K++P YN + +
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALN 277
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
EM G P+ TYN+ I C ++A+ L M + +P T++ +I
Sbjct: 278 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI---NPNVVTFSALID 334
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
A V+ ++ E L MI PD+ TY ++ G C+ +++EA E M +K P
Sbjct: 335 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
++VTYN +K C K DE + L+ M + G + TY LI +F+ E D A +
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
+M G D+ TY +++DGL + KVE A + E
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFE 490
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
+ + +K + P I + LL A+ K D ++ ++++N + N TY+IL
Sbjct: 69 FGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCR 128
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
+ L +M+++G+ PD T N+ ++ FC +++A L M G P
Sbjct: 129 RSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG---YQPD 185
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
+ T+ +I L +++R E +L+ M+ GC PD+ TY V+ G+C G ++ A L+
Sbjct: 186 SFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLK 245
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
+M P +V YN + LC+ KN ++AL L+ M G P+V TYN LI G
Sbjct: 246 KMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 305
Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
A +M +R +V T+ +ID K+ EA L +E++ + +
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 19/303 (6%)
Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
+D+ L +LK+ + K +P + N ++DALC V+ A + + NK ++PN T
Sbjct: 237 IDLALSLLKKMEQG---KIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 293
Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
YN L + L +MI+ P+ T++ ID F K + EA L++ M
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 353
Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
+ P TY+ +I +DR++E + MI+ C P+V TY +++G C A
Sbjct: 354 KRSI---DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410
Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
+V+E + EM +G + VTY + + D A ++ +M+ G P + TY+
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470
Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
+L+ G+ + A + + + D+ TY +MI+G+ KVE+ L + K
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530
Query: 442 GLK 444
G+K
Sbjct: 531 GVK 533
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 132/293 (45%), Gaps = 17/293 (5%)
Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNI--------- 216
+ +++ QP+ N L+ L + A + R V +P+ TY I
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235
Query: 217 ---LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
L + L++M Q P YNT ID C + V +A +LF M KG P
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI---RPNVV 292
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
TY +I L R + LL MI P+V T+ +++ GK+ EA K +EM
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
+ PDI TY+ + C + DEA ++ MI C+P+V TYN LI + +
Sbjct: 353 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 412
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
D E + EM +RG + TY +I G F + + A + +++V+ G+ LP
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV-LP 464
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 147/339 (43%), Gaps = 26/339 (7%)
Query: 109 DNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVL 158
DN P + YN +I L + + RL+ M++ N V FV L
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342
Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
+ K Y E IK P+I + L++ C +D A+ + + + +K PN TYN L
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402
Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
GM+ EM Q G + TY T I F +AR A +F+ M + G
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
P TY+I++ L N ++E + ++ S PD+ TY ++EGMC AGKVE+
Sbjct: 463 L---PDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519
Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
+ + KG P++VTY + C +EA L+ M E G P TYN LI
Sbjct: 520 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579
Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
+ G+ + E EM D T ++ + L D
Sbjct: 580 AHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHD 618
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 3/253 (1%)
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
E+M +G + + +TY+ I+ FC+ ++ A + M G P T ++
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGY---EPDIVTLNSLLNGF 161
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
+R+ + SL+G M+ G PD T+ ++ G+ + EA ++ M KG PD+
Sbjct: 162 CHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDL 221
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
VTY + LC + D AL L +M + P V YN +I + A + E
Sbjct: 222 VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281
Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
MD +G +V TY +I L + + +A LL +++ + + F + + G
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 463 LGAIHKLSDHMRK 475
L KL D M K
Sbjct: 342 LVEAEKLYDEMIK 354
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 1/215 (0%)
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
TY+I+I + ++ ++L M+ G PD+ T +L G C ++ +A + +M
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
GY PD T+N + L + EA+ L RM+ GC P + TY ++++ + G+
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
D A +M++ V Y +ID L + V +A L E+ NKG++ ++S
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297
Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
+ L G A LSD + + NP + AL
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%)
Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
++++ +L G M+ S P + + ++L + K + E+M N G ++ TY+
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
+ C AL + +M+++G P + T N L++ + A +M +
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
G D T+ +I GLF ++ EA L++ +V KG
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG 216
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 25/182 (13%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
P+I ++LLD LC G V+ A + E + + PD
Sbjct: 464 PDIMTYSILLDGLCNNGKVETALVV----------------------FEYLQRSKMEPDI 501
Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
+TYN I+ CKA V + DLF + KG P TY M+ + EE +L
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV---KPNVVTYTTMMSGFCRKGLKEEADAL 558
Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
M G LPD TY ++ G + + + EM + + D T +L D
Sbjct: 559 FREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHD 618
Query: 355 NK 356
+
Sbjct: 619 GR 620
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 17/294 (5%)
Query: 167 EKIKVKTQPEINALNLLLDALCKCGLVDYA-ETICKRVKNKV-KPNANTY-NILGMQTLE 223
E ++ +P + L+D LCK G + A K V++ KPN +TY +++G E
Sbjct: 312 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKE 371
Query: 224 E-----------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA 272
+ M + G P+ TY T I+ CKA A +L M +G P
Sbjct: 372 DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFM---PNI 428
Query: 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332
TY I +L + R E + LL + G D TY +++ C + +A F
Sbjct: 429 YTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 488
Query: 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392
M G+ D+ N + C K E+ RL+ ++ +G P+ +TY +IS Y + G+
Sbjct: 489 MNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGD 548
Query: 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446
D A + +H M + GC D TY +I GL S V+EAC L E ++++GL P
Sbjct: 549 IDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPP 602
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 185/434 (42%), Gaps = 42/434 (9%)
Query: 27 QSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVG 86
Q + V SLVC + + VS ++ LD LT + +
Sbjct: 53 QCLVKSVCSLVCTSYLRQNHVVSSPHRV----------------NLDFDANSLTHEQAIT 96
Query: 87 VLQRFQFEEK--IAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDY 144
V+ E +A FF WA + + H Y + D L + K ++ ML
Sbjct: 97 VVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLRN 156
Query: 145 MKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
++ V +++ + Q P +N +L+ + GL++YAE + +
Sbjct: 157 FSEIGRLNEAVGMVMDMQNQ-------GLTPSSITMNCVLEIAVELGLIEYAENVFDEMS 209
Query: 205 NK-VKPNANTYNILGM------------QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251
+ V P++++Y ++ + + L MIQ G PDN T + C+ +V
Sbjct: 210 VRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVN 269
Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
A F M G P + +I L + +++ F +L M+ +G P+V T+
Sbjct: 270 RAIWYFRKMIDLG---FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHT 326
Query: 312 EVLEGMCLAGKVEEAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
+++G+C G E+A++ FL+ + + Y P++ TY + C + A L+ RM E
Sbjct: 327 ALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKE 386
Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
G +P+V TY LI+ + + G A+E + M G ++ TY ID L S+ E
Sbjct: 387 QGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPE 446
Query: 431 ACFLLEEVVNKGLK 444
A LL + + GL+
Sbjct: 447 AYELLNKAFSCGLE 460
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 137/314 (43%), Gaps = 15/314 (4%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQT 221
P+ L+L ALC+ GLV+ A +++ + KPN + L +
Sbjct: 250 PDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 309
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
LEEM++ G P+ +T+ ID CK +A LF ++ S P TY MI
Sbjct: 310 LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF--LKLVRSDTYKPNVHTYTSMIGG 367
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+ D++ L M G P+V+TY ++ G C AG AY+ + MG++G+ P+
Sbjct: 368 YCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 427
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
I TYN + LC EA L + G TY +LI + + + A +
Sbjct: 428 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 487
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
M+K G D+ ++I K++E+ L + VV+ GL + S + G
Sbjct: 488 RMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEG 547
Query: 462 DLGAIHKLSDHMRK 475
D+ K +M++
Sbjct: 548 DIDLALKYFHNMKR 561
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 118/313 (37%), Gaps = 48/313 (15%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------GMQ 220
+P ++ ++ CK ++ AE + R+K + + PN NTY L +
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYE 414
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE---------------------- 258
+ M G P+ +TYN AID+ CK EA +L
Sbjct: 415 LMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQC 474
Query: 259 ----------FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
F T + I+I A + +M+E L +++ G +P
Sbjct: 475 KQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKE 534
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
TY ++ C G ++ A K+ M G PD TY + LC DEA +LY M
Sbjct: 535 TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 594
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
I+ G P T L Y + + A +DK+ + V T ++ L KV
Sbjct: 595 IDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRT---LVRKLCSEKKV 651
Query: 429 EEACFLLEEVVNK 441
A ++++ K
Sbjct: 652 GVAALFFQKLLEK 664
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 1/168 (0%)
Query: 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380
G++ EA + +M N+G P +T NC L++ + + A ++ M G P +Y
Sbjct: 161 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 220
Query: 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440
+++ F G+ A M +RG D T +++ L + V A + ++++
Sbjct: 221 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 280
Query: 441 KGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
G K F S + L G + A L + +R + P + AL
Sbjct: 281 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTAL 328
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 148/303 (48%), Gaps = 19/303 (6%)
Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANT 213
+D+ L +LK+ K K + ++ ++DALC V+ A + + NK ++PN T
Sbjct: 236 IDLALSLLKKME---KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292
Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
YN L + L +MI+ P+ T++ ID F K + EA L++ M
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
+ P TY+ +I +DR++E + MI+ C P+V TY +++G C A
Sbjct: 353 KRSI---DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409
Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
+VEE + EM +G + VTYN ++ L + D A +++ +M+ G P + TY+
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469
Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441
+L+ + G+ + A + + K D+ TY +MI+G+ KVE+ L + K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529
Query: 442 GLK 444
G+K
Sbjct: 530 GVK 532
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 16/292 (5%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------ 217
+ E ++ + P I N LL A+ K D ++ +R++N ++ + +YNIL
Sbjct: 68 FGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCR 127
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
+ L +M+++G+ PD T ++ ++ +C + ++EA L + M P
Sbjct: 128 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY---QPN 184
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
T+ +I L +++ E +L+ M+ GC PD+ TY V+ G+C G ++ A L+
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391
+M D+V Y + LC+ KN ++AL L+ M G P+V TYN LI G
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Query: 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
A +M +R +V T+ +ID K+ EA L +E++ + +
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 133/276 (48%), Gaps = 16/276 (5%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL------------GMQ 220
QP++ +++ LCK G +D A ++ K++ K K++ + Y + +
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
EM G P+ TYN+ I C ++A+ L M + +P T++ +I
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI---NPNVVTFSALID 333
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
A V+ ++ E L MI PD+ TY ++ G C+ +++EA E M +K P
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
++VTYN +K C K +E + L+ M + G + TYN LI F+ G+ D A + +
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436
+M G D+ TY +++DGL K+E+A + E
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 16/326 (4%)
Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANTYNIL--- 217
L +TE +P + N L+ LC G D + + ++ K+ PN T++ L
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334
Query: 218 ---------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268
+ +EMI+ PD FTY++ I+ FC + EA +FE M +K
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-- 392
Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
P TY +I + R+EE L M G + + TY +++G+ AG + A K
Sbjct: 393 -PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451
Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
++M + G PPDI+TY+ L LC ++AL ++ + + P + TYN++I
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511
Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
+ G+ + ++ + + +G +V Y MI G EEA L E+ G
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSG 571
Query: 449 KFDSYLMQLSVIGDLGAIHKLSDHMR 474
+++ + GD A +L MR
Sbjct: 572 TYNTLIRARLRDGDKAASAELIKEMR 597
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 148/339 (43%), Gaps = 26/339 (7%)
Query: 109 DNYAHEP--LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV--------FVPVDVL 158
DN P + YN +I L + + RL+ M++ N V FV L
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341
Query: 159 LMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL 217
+ K Y E IK P+I + L++ C +D A+ + + + +K PN TYN L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
GM+ EM Q G + TYNT I +A A +F+ M + G
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
P TY+I++ L + ++E+ + ++ S PD+ TY ++EGMC AGKVE+
Sbjct: 462 ---PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVED 518
Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
+ + KG P+++ Y + C +EA L+ M E G P+ TYN LI
Sbjct: 519 GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424
G+ + E EM G D T ++I+ L D
Sbjct: 579 ARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 51/323 (15%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRV-KNKVKPNANTYNIL---------- 217
+K+ +P+I L+ LL+ C + A + ++ + +PN T+N L
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 201
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
+ ++ M+ G PD FTY T ++ CK + A L + M KG Y
Sbjct: 202 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME-KGKI--EADVVIY 258
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----------------- 318
+I AL + + +L M N G P+V TY ++ +C
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 319 ------------------LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
GK+ EA K +EM + PDI TY+ + C + DE
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378
Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420
A ++ MI C+P+V TYN LI + + + E + EM +RG + TY +I
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 421 GLFDCSKVEEACFLLEEVVNKGL 443
GLF + A + +++V+ G+
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGV 461
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 16/298 (5%)
Query: 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN---TAIDTFCKARMV 250
DY E + + V +K + + ++ G EM+Q P +N +AI K +V
Sbjct: 46 DYREKLSRNVLLDLKLD-DAVDLFG-----EMVQSRPLPSIVEFNKLLSAIAKMNKFDLV 99
Query: 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310
+ + +R S +Y I+I + ++ ++LG M+ G PD+ T
Sbjct: 100 ISLGERMQNLRI------SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTL 153
Query: 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370
+L G C ++ EA +++M Y P+ VT+N + L + EA+ L RM+
Sbjct: 154 SSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVA 213
Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
GC P + TY +++ + G+ D A +M+K DV Y +ID L + V +
Sbjct: 214 RGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVND 273
Query: 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG-AIHKLSDHMRKFYNPVIARRLAL 487
A L E+ NKG++ ++S + L G A LSD + + NP + AL
Sbjct: 274 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 181 NLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQ 227
N L+ L + G D A+ I K+ V + V P+ TY+IL + E + +
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
PD +TYN I+ CKA V + DLF + KG P Y MI +
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV---KPNVIIYTTMISGFCRKGL 550
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347
EE +L M G LP+ TY ++ G + + ++EM + G+ D T +
Sbjct: 551 KEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISM 610
Query: 348 FLKVLCDNK 356
+ +L D +
Sbjct: 611 VINMLHDGR 619
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 190/430 (44%), Gaps = 32/430 (7%)
Query: 67 NMEK--ALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDI 124
N EK +L SL + + V+ + + I RFFMW +Y +P N ++ +
Sbjct: 53 NWEKNSSLKSLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKL 112
Query: 125 LSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-PEINALNLL 183
+ S+ ++ +++ R K + L+ + E + P ++L +
Sbjct: 113 IVSSGLYRVAHAVIVALIKECSRCEKEMLK---LMYCFDELREVFGFRLNYPCYSSLLMS 169
Query: 184 LDAL-----------------CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMI 226
L L G++DY + KN A + + +++
Sbjct: 170 LAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMF-------MSKIL 222
Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND 286
++G D+ + + FC+ + +A +F+ M + +P + +Y+I+I L +
Sbjct: 223 KIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKE--VTCAPNSVSYSILIHGLCEVG 280
Query: 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
R+EE F L M GC P TY +++ +C G +++A+ +EM +G P++ TY
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYT 340
Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406
+ LC + +EA + +M++ +PSV TYN LI+ Y + G AFE M+KR
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400
Query: 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466
C +V T+ +++GL K +A LL+ +++ GL ++ + L G +
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTA 460
Query: 467 HKLSDHMRKF 476
+KL M F
Sbjct: 461 YKLLSSMNCF 470
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 16/283 (5%)
Query: 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL----------- 217
+V P + ++L+ LC+ G ++ A + ++ K +P+ TY +L
Sbjct: 259 EVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID 318
Query: 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
+EMI G P+ TY ID C+ + EA + M K P+ TY
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKM-VKDRIF--PSVITYN 375
Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
+I ++ R+ F LL M C P+V T+ E++EG+C GK +A L+ M +
Sbjct: 376 ALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN 435
Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
G PDIV+YN + LC + + A +L M P T+ +I+ + + G+ D A
Sbjct: 436 GLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVA 495
Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439
M ++G + D T +IDG+ K +A F+LE +V
Sbjct: 496 SAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLV 538
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 133/327 (40%), Gaps = 51/327 (15%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------ 217
+ E I +P ++ +L+D LC+ G ++ A +C++ VK+++ P+ TYN L
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCK 383
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
+ L M + P+ T+N ++ C+ +A L + M G SP
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG---LSPD 440
Query: 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331
+Y ++I L + M + LL M PD T+ ++ C GK + A FL
Sbjct: 441 IVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLG 500
Query: 332 EMGNKGYPPDIVT-----------------------------------YNCFLKVLCDNK 356
M KG D VT N L +L
Sbjct: 501 LMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGC 560
Query: 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416
E L + G++ ++G PSV TY L+ G+ G+F M GC +V Y
Sbjct: 561 KVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYT 620
Query: 417 VMIDGLFDCSKVEEACFLLEEVVNKGL 443
++I+GL +VEEA LL + + G+
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGV 647
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 130/319 (40%), Gaps = 59/319 (18%)
Query: 153 VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNA 211
VP LL +++ K +P + N L++ LC+ G A + KR + N + P+
Sbjct: 388 VPAFELLTVME------KRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441
Query: 212 NTYNILGMQTLEEMIQMGH----------------APDNFTYNTAIDTFCKARMVTEAAD 255
+YN+L ++ + + GH PD T+ I+ FCK A+
Sbjct: 442 VSYNVL----IDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASA 497
Query: 256 LFEFMRTKGSTISSPTAKTYA--------------------------------IMIVALV 283
M KG ++ T T +++ L
Sbjct: 498 FLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLS 557
Query: 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343
+ +++E ++LG + G +P V TY +++G+ +G + +++ LE M G P++
Sbjct: 558 KGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVY 617
Query: 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403
Y + LC +EA +L M + G P+ TY +++ Y G+ D A ET M
Sbjct: 618 PYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAM 677
Query: 404 DKRGCAQDVDTYCVMIDGL 422
+RG + Y ++ G
Sbjct: 678 VERGYELNDRIYSSLLQGF 696
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 135/355 (38%), Gaps = 58/355 (16%)
Query: 168 KIKVKTQPEINALNLLLDALCK-CGLVDYAETICKRVKNKVKPNANTYNIL--------- 217
K+++ T P ++LN++LD L K C + + + K K + P+ TY L
Sbjct: 539 KMRILTTP--HSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 218 ---GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
+ LE M G P+ + Y I+ C+ V EA L M+ G SP T
Sbjct: 597 ITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV---SPNHVT 653
Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK------------ 322
Y +M+ V N +++ + M+ G + Y +L+G L+ K
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSD 713
Query: 323 ----------VEEAYKFLEEMGNKGYPPDIVTYNCFLKV--LCDNKNGDEALRLYGRMIE 370
+ E +E++G ++ C V LC DE+ L ++E
Sbjct: 714 IALRETDPECINELISVVEQLGG------CISGLCIFLVTRLCKEGRTDESNDLVQNVLE 767
Query: 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430
G + + ++++ Y + E + K G ++C++I GL E
Sbjct: 768 RGVFLE-KAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAER 826
Query: 431 ACFLLEE------VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479
A L+ E VV K L Y + LM+ GD + L D + P
Sbjct: 827 ARELVMELLTSNGVVEKSGVLTYVE---CLMEGDETGDCSEVIDLVDQLHCRERP 878
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 16/286 (5%)
Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
K + ++ N ++D+LCK VD A + K ++ K ++PN TY+ L
Sbjct: 255 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 314
Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
Q L +MI+ P+ T+N ID F K EA L++ M + P TY +
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI---DPDIFTYNSL 371
Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
+ +DR+++ + M++ C PDV TY +++G C + +VE+ + EM ++G
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431
Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
D VTY ++ L + + D A +++ +M+ G P + TY++L+ G+ + A E
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 491
Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
+ M K D+ Y MI+G+ KV++ L + KG+K
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 537
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 130/287 (45%), Gaps = 15/287 (5%)
Query: 201 KRVKNKVKPNANTYNI------------LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248
+ V+ +PN TY + L + L +M D +NT ID+ CK R
Sbjct: 215 RMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 274
Query: 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
V +A +LF+ M TKG P TY+ +I L R + LL MI P++
Sbjct: 275 HVDDALNLFKEMETKGI---RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
T+ +++ GK EA K ++M + PDI TYN + C + D+A +++ M
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
+ C+P V TYN LI + + + E + EM RG D TY +I GLF
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 451
Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
+ A + +++V+ G+ + L L G L ++ D+M+K
Sbjct: 452 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 146/303 (48%), Gaps = 23/303 (7%)
Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
VD L + K+ K +P + + L+ LC G D ++ + ++ K+ PN T
Sbjct: 276 VDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332
Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
+N L + ++MI+ PD FTYN+ ++ FC + +A +FEFM
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 392
Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
+K P TY +I ++ R+E+ L M + G + D TY +++G+ G
Sbjct: 393 SKDCF---PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449
Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
+ A K ++M + G PPDI+TY+ L LC+N ++AL ++ M + + Y
Sbjct: 450 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 509
Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVV 439
+I + G+ D ++ + + +G +V TY MI GL CSK ++EA LL+++
Sbjct: 510 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL--CSKRLLQEAYALLKKMK 567
Query: 440 NKG 442
G
Sbjct: 568 EDG 570
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 47/288 (16%)
Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
++ I+ K P + N L+DA K G AE + +K + P+ TYN L
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378
Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------- 264
Q E M+ PD TYNT I FCK++ V + +LF M +G
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 265 ------------------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
S P TY+I++ L N ++E+ + +M
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
S D+ Y ++EGMC AGKV++ + + KG P++VTYN + LC + E
Sbjct: 499 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 558
Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
A L +M E G P+ TYN LI + G+ + E EM R C
Sbjct: 559 AYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM--RSC 604
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 16/285 (5%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQ 220
QP + ++++ LCK G D A + +++ K++ + +N + +
Sbjct: 222 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 281
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
+EM G P+ TY++ I C ++A+ L M K +P T+ +I
Sbjct: 282 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI---NPNLVTFNALID 338
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
A V+ + E L MI PD+ TY ++ G C+ ++++A + E M +K P
Sbjct: 339 AFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 398
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
D+VTYN +K C +K ++ L+ M G TY LI F G+ D A + +
Sbjct: 399 DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 458
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
+M G D+ TY +++DGL + K+E+A + + + +KL
Sbjct: 459 KQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 16/288 (5%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
+K + P I N LL A+ K D ++ ++++ ++ TYNIL
Sbjct: 77 VKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQI 136
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
+ L +M+++G+ P T ++ ++ +C + +++A L + M G P T+
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY---RPDTITF 193
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
+I L +++ E +L+ M+ GC P++ TY V+ G+C G + A L +M
Sbjct: 194 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA 253
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
D+V +N + LC ++ D+AL L+ M G P+V TY+ LIS G
Sbjct: 254 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 313
Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
A + +M ++ ++ T+ +ID K EA L ++++ + +
Sbjct: 314 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 1/207 (0%)
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
TY I+I + ++ +LLG M+ G P + T +L G C ++ +A +++M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
GY PD +T+ + L + EA+ L RM++ GC P++ TY ++++ + G+
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
D A ++M+ DV + +ID L V++A L +E+ KG++ + S
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Query: 454 LMQLSVIGDLG-AIHKLSDHMRKFYNP 479
+ L G A LSD + K NP
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINP 328
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 1/179 (0%)
Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
G SS + I+ L + ++++ L G M+ S LP + + ++L + K
Sbjct: 43 GRAFSSGSGDYREILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF 101
Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
+ E+M + TYN + C AL L G+M+++G PS+ T + L
Sbjct: 102 DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSL 161
Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
++ Y A +M + G D T+ +I GLF +K EA L++ +V +G
Sbjct: 162 LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 16/187 (8%)
Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
L+ L G D A+ + K+ V + V P+ TY+IL ++ + M +
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500
Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
D + Y T I+ CKA V + DLF + KG P TY MI L ++
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV---KPNVVTYNTMISGLCSKRLLQ 557
Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
E ++LL M G LP+ TY ++ G + + + EM + + D T
Sbjct: 558 EAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 617
Query: 350 KVLCDNK 356
+L D +
Sbjct: 618 NMLHDGR 624
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%)
Query: 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369
Y+E+L K+++A M P IV +N L + K D + L +M
Sbjct: 53 YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112
Query: 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
+ + TYN+LI+ + + A +M K G + T +++G ++
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172
Query: 430 EACFLLEEVVNKGLK 444
+A L++++V G +
Sbjct: 173 DAVALVDQMVEMGYR 187
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 16/286 (5%)
Query: 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------------G 218
K + ++ N ++D+LCK VD A + K ++ K ++PN TY+ L
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239
Query: 219 MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278
Q L +MI+ P+ T+N ID F K EA L + M + P TY +
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI---DPDIFTYNSL 296
Query: 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338
I +DR+++ + M++ C PD+ TY +++G C + +VE+ + EM ++G
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Query: 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398
D VTY ++ L + + D A +++ +M+ G P + TY++L+ G+ + A E
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 416
Query: 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444
+ M K D+ Y MI+G+ KV++ L + KG+K
Sbjct: 417 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 462
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 25/302 (8%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD 233
QP + ++++ LCK G +D A +N+L +M D
Sbjct: 147 QPNLVTYGVVVNGLCKRGDIDLA-----------------FNLL-----NKMEAAKIEAD 184
Query: 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293
+NT ID+ CK R V +A +LF+ M TKG P TY+ +I L R +
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGI---RPNVVTYSSLISCLCSYGRWSDASQ 241
Query: 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353
LL MI P++ T+ +++ GK EA K ++M + PDI TYN + C
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 301
Query: 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413
+ D+A +++ M+ C+P + TYN LI + + + E + EM RG D
Sbjct: 302 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361
Query: 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473
TY +I GLF + A + +++V+ G+ + L L G L ++ D+M
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Query: 474 RK 475
+K
Sbjct: 422 QK 423
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 146/303 (48%), Gaps = 23/303 (7%)
Query: 155 VDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LVDYAETICKRVKNKVKPNANT 213
VD L + K+ K +P + + L+ LC G D ++ + ++ K+ PN T
Sbjct: 201 VDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257
Query: 214 YNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
+N L + ++MI+ PD FTYN+ I+ FC + +A +FEFM
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 317
Query: 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321
+K P TY +I ++ R+E+ L M + G + D TY +++G+ G
Sbjct: 318 SKDCF---PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 374
Query: 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381
+ A K ++M + G PPDI+TY+ L LC+N ++AL ++ M + + Y
Sbjct: 375 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 434
Query: 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVV 439
+I + G+ D ++ + + +G +V TY MI GL CSK ++EA LL+++
Sbjct: 435 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL--CSKRLLQEAYALLKKMK 492
Query: 440 NKG 442
G
Sbjct: 493 EDG 495
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 120/288 (41%), Gaps = 47/288 (16%)
Query: 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------- 217
++ I+ K P + N L+DA K G AE + +K + P+ TYN L
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303
Query: 218 -----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG-------- 264
Q E M+ PD TYNT I FCK++ V + +LF M +G
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363
Query: 265 ------------------------STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300
S P TY+I++ L N ++E+ + +M
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360
S D+ Y ++EGMC AGKV++ + + KG P++VTYN + LC + E
Sbjct: 424 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 483
Query: 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408
A L +M E G P TYN LI + G+ + E EM R C
Sbjct: 484 AYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM--RSC 529
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 16/288 (5%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---------- 217
+K + P I N LL A+ K D ++ ++++ + N TYNIL
Sbjct: 2 VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
+ L +M+++G+ P T ++ ++ +C + +++A L + M G P T+
Sbjct: 62 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY---RPDTITF 118
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
+I L +++ E +L+ M+ GC P++ TY V+ G+C G ++ A+ L +M
Sbjct: 119 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA 178
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
D+V +N + LC ++ D+AL L+ M G P+V TY+ LIS G
Sbjct: 179 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 238
Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
A + +M ++ ++ T+ +ID K EA L ++++ + +
Sbjct: 239 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 4/256 (1%)
Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
M++ P F +N + K + L E M+ G S TY I+I +
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGI---SHNLYTYNILINCFCR 57
Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
++ +LLG M+ G P + T +L G C ++ +A +++M GY PD +T
Sbjct: 58 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 117
Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
+ + L + EA+ L RM++ GC P++ TY ++++ + G+ D AF ++M+
Sbjct: 118 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 177
Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464
DV + +ID L V++A L +E+ KG++ + S + L G
Sbjct: 178 AAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWS 237
Query: 465 -AIHKLSDHMRKFYNP 479
A LSD + K NP
Sbjct: 238 DASQLLSDMIEKKINP 253
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 3/253 (1%)
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
E+M ++G + + +TYN I+ FC+ ++ A L M G P+ T + ++
Sbjct: 34 EKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGY---EPSIVTLSSLLNGY 90
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
R+ + +L+ M+ G PD T+ ++ G+ L K EA ++ M +G P++
Sbjct: 91 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 150
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
VTY + LC + D A L +M V +N +I + D A + E
Sbjct: 151 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 210
Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
M+ +G +V TY +I L + +A LL +++ K + F++ + G
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270
Query: 463 LGAIHKLSDHMRK 475
KL D M K
Sbjct: 271 FVEAEKLHDDMIK 283
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 16/187 (8%)
Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNIL------------GMQTLEEMIQMG 229
L+ L G D A+ + K+ V + V P+ TY+IL ++ + M +
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425
Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
D + Y T I+ CKA V + DLF + KG P TY MI L ++
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV---KPNVVTYNTMISGLCSKRLLQ 482
Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
E ++LL M G LPD TY ++ G + + + EM + + D T
Sbjct: 483 EAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 542
Query: 350 KVLCDNK 356
+L D +
Sbjct: 543 NMLHDGR 549
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 48/322 (14%)
Query: 161 ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL-- 217
+LKQ T+K P I + N+L+D LCK G++ A+TI +K N V P+A TY L
Sbjct: 348 VLKQMTDK---GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLH 404
Query: 218 ----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267
L+EM++ P+ +T N + + K ++EA +L M KG +
Sbjct: 405 GYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGL 464
Query: 268 SSPTAKTYAIMIVALVQNDRMEECFSL-----------LGHMINS------------GCL 304
+ T I++ L + +++ + LG++ NS CL
Sbjct: 465 DTVTCN---IIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCL 521
Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364
PD+ TY +L G+C AG+ EA EM + PD V YN F+ C A R+
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581
Query: 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET---WHEMDKRGCAQDVDTYCVMIDG 421
M + GC S++TYN LI LG + FE EM ++G + ++ TY I
Sbjct: 582 LKDMEKKGCHKSLETYNSLI---LGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQY 638
Query: 422 LFDCSKVEEACFLLEEVVNKGL 443
L + KVE+A LL+E++ K +
Sbjct: 639 LCEGEKVEDATNLLDEMMQKNI 660
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 146/338 (43%), Gaps = 39/338 (11%)
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL------------GMQ 220
+P NL+L CK GL++ A+T+ + ++ N + +YNI
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAET 347
Query: 221 TLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280
L++M G P ++YN +D CK M+++A + M+ G P A TY ++
Sbjct: 348 VLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVC---PDAVTYGCLLH 404
Query: 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340
+++ SLL M+ + CLP+ T +L + G++ EA + L +M KGY
Sbjct: 405 GYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGL 464
Query: 341 DIVTYNCFLKVLCDNKNGDEA------LRLYGR-----------------MIEVGCWPSV 377
D VT N + LC + D+A +R++G +IE C P +
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524
Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437
TY+ L++ + G A + EM D Y + I K+ A +L++
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKD 584
Query: 438 VVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475
+ KG ++S ++ L + + IH L D M++
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKE 622
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 13/303 (4%)
Query: 181 NLLLDALCKCGLVDYAETICK--RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYN 238
N+++D LC G +D A I K RV + +G+ + +I+ PD TY+
Sbjct: 470 NIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD-DSLIENNCLPDLITYS 528
Query: 239 TAIDTFCKARMVTEAADLF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
T ++ CKA EA +LF E M K P + Y I I + ++ F +L
Sbjct: 529 TLLNGLCKAGRFAEAKNLFAEMMGEK----LQPDSVAYNIFIHHFCKQGKISSAFRVLKD 584
Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
M GC + TY ++ G+ + ++ E + ++EM KG P+I TYN ++ LC+ +
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEK 644
Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
++A L M++ P+V ++ LI + ++ + D A E + E C Q Y +
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVF-ETAVSICGQKEGLYSL 703
Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL----GAIHKLSDHM 473
M + L ++ +A LLE V+++G +L + + L +L G +HK+ D
Sbjct: 704 MFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763
Query: 474 RKF 476
F
Sbjct: 764 YGF 766
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 21/257 (8%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN 234
P+I N + ALCK G V A I ++ L+E + + P++
Sbjct: 250 PDIVTFNSRISALCKEGKVLDASRIFSDME-----------------LDEYLGLPR-PNS 291
Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
TYN + FCK ++ +A LFE +R S ++Y I + LV++ + E ++
Sbjct: 292 ITYNLMLKGFCKVGLLEDAKTLFESIRENDDLAS---LQSYNIWLQGLVRHGKFIEAETV 348
Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
L M + G P + +Y +++G+C G + +A + M G PD VTY C L C
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCS 408
Query: 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414
D A L M+ C P+ T N+L+ +++G A E +M+++G D T
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVT 468
Query: 415 YCVMIDGLFDCSKVEEA 431
+++DGL ++++A
Sbjct: 469 CNIIVDGLCGSGELDKA 485
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 49/330 (14%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL------ 217
Y + + P+ NLL+ ALC VD A + + K KPN T+ IL
Sbjct: 135 YKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCK 194
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG------- 264
G++ L M G P+ YNT + +FC+ ++ + E MR +G
Sbjct: 195 AGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVT 254
Query: 265 --STISS---------------------------PTAKTYAIMIVALVQNDRMEECFSLL 295
S IS+ P + TY +M+ + +E+ +L
Sbjct: 255 FNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLF 314
Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
+ + L + +Y L+G+ GK EA L++M +KG P I +YN + LC
Sbjct: 315 ESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKL 374
Query: 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415
+A + G M G P TY L+ Y +G+ D A EM + C + T
Sbjct: 375 GMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTC 434
Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
+++ L+ ++ EA LL ++ KG L
Sbjct: 435 NILLHSLWKMGRISEAEELLRKMNEKGYGL 464
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 148/328 (45%), Gaps = 43/328 (13%)
Query: 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLL 183
ILSS+ K K L+ S++ ++N + ++ ++ E +P + NLL
Sbjct: 65 ILSSSIQKTKLSSLL-SVVSIFAKSNHIDKAFPQFQLVRSRFPE-----NKPSVYLYNLL 118
Query: 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243
L++ K V++ + K +M+ G AP +T+N I
Sbjct: 119 LESCIKERRVEFVSWLYK----------------------DMVLCGIAPQTYTFNLLIRA 156
Query: 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303
C + V A +LF+ M KG P T+ I++ + ++ LL M + G
Sbjct: 157 LCDSSCVDAARELFDEMPEKG---CKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGV 213
Query: 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363
LP+ Y ++ C G+ +++ K +E+M +G PDIVT+N + LC +A R
Sbjct: 214 LPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASR 273
Query: 364 LYGRMIEVGCW-----PSVQTYNMLISMYFELGEPDGA---FETWHEMDKRGCAQDVDTY 415
++ M E+ + P+ TYN+++ + ++G + A FE+ E D Q +Y
Sbjct: 274 IFSDM-ELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQ---SY 329
Query: 416 CVMIDGLFDCSKVEEACFLLEEVVNKGL 443
+ + GL K EA +L+++ +KG+
Sbjct: 330 NIWLQGLVRHGKFIEAETVLKQMTDKGI 357
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 2/220 (0%)
Query: 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298
+ + F K+ + +A F+ +R++ + P+ Y +++ + ++ R+E L M
Sbjct: 80 SVVSIFAKSNHIDKAFPQFQLVRSRFPE-NKPSVYLYNLLLESCIKERRVEFVSWLYKDM 138
Query: 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358
+ G P T+ ++ +C + V+ A + +EM KG P+ T+ ++ C
Sbjct: 139 VLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLT 198
Query: 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418
D+ L L M G P+ YN ++S + G D + + +M + G D+ T+
Sbjct: 199 DKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSR 258
Query: 419 IDGLFDCSKVEEACFLLEEV-VNKGLKLPYRKFDSYLMQL 457
I L KV +A + ++ +++ L LP +Y + L
Sbjct: 259 ISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 23/224 (10%)
Query: 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYN--ILGMQT 221
+ E + K QP+ A N+ + CK G + A + K ++ K + TYN ILG+
Sbjct: 547 FAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI 606
Query: 222 ----------LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT 271
++EM + G +P+ TYNTAI C+ V +A +L + M K +P
Sbjct: 607 KNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNI---APN 663
Query: 272 AKTYAIMIVALVQN---DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
++ +I A + D +E F S C Y + + AG++ +A +
Sbjct: 664 VFSFKYLIEAFCKVPDFDMAQEVF----ETAVSICGQKEGLYSLMFNELLAAGQLLKATE 719
Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
LE + ++G+ Y ++ LC + A + +MI+ G
Sbjct: 720 LLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,018,169
Number of Sequences: 539616
Number of extensions: 7396427
Number of successful extensions: 22745
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 16263
Number of HSP's gapped (non-prelim): 2538
length of query: 499
length of database: 191,569,459
effective HSP length: 122
effective length of query: 377
effective length of database: 125,736,307
effective search space: 47402587739
effective search space used: 47402587739
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)