Query 036198
Match_columns 499
No_of_seqs 536 out of 2990
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 10:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.2E-56 4.8E-61 463.7 51.3 454 9-477 368-877 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.8E-56 6.1E-61 462.9 51.9 394 51-457 369-799 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.2E-54 4.8E-59 456.4 42.9 442 5-474 146-652 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.1E-53 4.6E-58 438.7 41.8 441 8-478 84-559 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.2E-52 2.6E-57 443.2 44.9 460 5-486 181-696 (857)
6 PLN03081 pentatricopeptide (PP 100.0 4.7E-51 1E-55 421.3 42.6 363 96-474 104-489 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 3.1E-21 6.8E-26 207.9 47.4 432 15-474 435-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 9.3E-21 2E-25 204.3 49.9 363 96-479 448-835 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.7E-19 5.9E-24 173.5 37.1 295 131-477 47-348 (389)
10 PRK11788 tetratricopeptide rep 99.9 4.8E-19 1E-23 171.8 36.1 315 78-448 34-354 (389)
11 PRK15174 Vi polysaccharide exp 99.8 1.5E-15 3.3E-20 154.9 42.2 334 118-490 45-395 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-14 3.8E-19 147.5 45.2 348 93-479 141-574 (615)
13 KOG4422 Uncharacterized conser 99.8 7.9E-15 1.7E-19 131.6 36.6 292 114-414 115-470 (625)
14 KOG4626 O-linked N-acetylgluco 99.7 1.6E-14 3.4E-19 135.5 31.8 349 114-482 115-491 (966)
15 PRK15174 Vi polysaccharide exp 99.7 1.6E-13 3.6E-18 140.1 40.9 324 57-442 47-382 (656)
16 PRK11447 cellulose synthase su 99.7 1.4E-13 3.1E-18 150.2 43.0 366 92-476 282-700 (1157)
17 PRK11447 cellulose synthase su 99.7 3E-13 6.6E-18 147.6 44.5 294 175-482 301-672 (1157)
18 KOG4422 Uncharacterized conser 99.7 5.4E-13 1.2E-17 120.0 37.9 345 113-482 205-596 (625)
19 PRK09782 bacteriophage N4 rece 99.7 7.3E-12 1.6E-16 131.3 50.9 235 233-480 476-710 (987)
20 PRK10049 pgaA outer membrane p 99.7 1.3E-12 2.8E-17 136.5 44.8 384 59-481 22-461 (765)
21 TIGR00990 3a0801s09 mitochondr 99.7 1.5E-12 3.3E-17 133.4 43.8 330 118-481 130-542 (615)
22 KOG4626 O-linked N-acetylgluco 99.7 1.4E-13 3.1E-18 129.2 27.1 367 48-457 112-500 (966)
23 PRK10049 pgaA outer membrane p 99.6 1.8E-11 3.8E-16 128.0 44.6 367 76-482 10-428 (765)
24 PRK14574 hmsH outer membrane p 99.6 1.9E-11 4.1E-16 125.7 42.9 379 93-482 82-519 (822)
25 PRK09782 bacteriophage N4 rece 99.6 7.6E-11 1.6E-15 123.8 44.5 239 232-481 507-745 (987)
26 PRK10747 putative protoheme IX 99.6 4.7E-11 1E-15 115.1 36.2 283 132-475 97-389 (398)
27 PRK14574 hmsH outer membrane p 99.6 4E-10 8.6E-15 116.1 44.7 173 313-486 298-489 (822)
28 TIGR00540 hemY_coli hemY prote 99.6 3.9E-11 8.4E-16 116.3 34.9 300 117-475 84-398 (409)
29 PF13429 TPR_15: Tetratricopep 99.5 4.2E-14 9.1E-19 130.1 11.4 261 182-475 13-276 (280)
30 COG2956 Predicted N-acetylgluc 99.5 1.2E-10 2.6E-15 101.5 30.5 304 116-476 37-347 (389)
31 PRK10747 putative protoheme IX 99.5 8.7E-10 1.9E-14 106.3 35.4 290 86-440 91-389 (398)
32 KOG1126 DNA-binding cell divis 99.5 4.5E-11 9.8E-16 114.0 25.4 271 176-479 352-623 (638)
33 COG3071 HemY Uncharacterized e 99.5 3.5E-09 7.5E-14 95.4 35.2 287 131-476 96-390 (400)
34 PF13429 TPR_15: Tetratricopep 99.4 9.7E-13 2.1E-17 121.1 12.8 263 120-440 13-276 (280)
35 KOG1155 Anaphase-promoting com 99.4 1.4E-08 3E-13 93.1 37.2 303 168-476 155-536 (559)
36 KOG1155 Anaphase-promoting com 99.4 4.7E-09 1E-13 96.1 33.2 264 169-439 254-534 (559)
37 COG2956 Predicted N-acetylgluc 99.4 6.9E-09 1.5E-13 90.8 31.9 311 78-442 34-348 (389)
38 KOG2002 TPR-containing nuclear 99.4 2.1E-09 4.5E-14 106.9 32.3 404 53-482 308-751 (1018)
39 KOG2076 RNA polymerase III tra 99.4 5.6E-09 1.2E-13 103.1 34.6 314 131-474 151-510 (895)
40 TIGR00540 hemY_coli hemY prote 99.4 8.6E-09 1.9E-13 100.0 35.1 297 83-440 88-398 (409)
41 TIGR02521 type_IV_pilW type IV 99.4 1.1E-09 2.4E-14 97.9 27.1 202 272-477 31-233 (234)
42 KOG1126 DNA-binding cell divis 99.3 2.9E-10 6.3E-15 108.6 22.7 247 233-492 352-601 (638)
43 KOG2076 RNA polymerase III tra 99.3 4.1E-08 8.8E-13 97.2 38.0 351 92-477 152-556 (895)
44 KOG2003 TPR repeat-containing 99.3 3.4E-09 7.4E-14 96.6 27.3 348 96-480 254-693 (840)
45 PF13041 PPR_2: PPR repeat fam 99.3 4.4E-12 9.5E-17 82.3 6.3 47 341-387 2-48 (50)
46 TIGR02521 type_IV_pilW type IV 99.3 2.7E-09 5.9E-14 95.3 26.8 202 233-441 30-232 (234)
47 KOG2002 TPR-containing nuclear 99.3 5.7E-08 1.2E-12 97.0 37.4 357 96-488 147-537 (1018)
48 KOG4318 Bicoid mRNA stability 99.3 9E-10 2E-14 108.1 23.7 203 106-321 16-285 (1088)
49 PF13041 PPR_2: PPR repeat fam 99.3 8.4E-12 1.8E-16 80.9 6.8 49 410-458 1-49 (50)
50 KOG4318 Bicoid mRNA stability 99.3 9.4E-11 2E-15 114.8 16.8 219 220-464 11-288 (1088)
51 PRK12370 invasion protein regu 99.3 1.4E-08 3E-13 102.4 31.4 269 113-442 254-536 (553)
52 KOG2003 TPR repeat-containing 99.3 1.2E-07 2.7E-12 86.6 33.9 367 79-463 270-710 (840)
53 KOG0547 Translocase of outer m 99.3 7.1E-08 1.5E-12 89.2 31.9 225 242-475 334-565 (606)
54 PRK12370 invasion protein regu 99.2 1.6E-08 3.6E-13 101.9 28.8 217 247-476 317-535 (553)
55 KOG1129 TPR repeat-containing 99.2 2.8E-09 6E-14 93.3 19.7 233 237-479 226-461 (478)
56 COG3071 HemY Uncharacterized e 99.2 4.7E-07 1E-11 82.0 33.7 294 86-442 91-391 (400)
57 PF12569 NARP1: NMDA receptor- 99.2 1E-07 2.3E-12 93.1 31.1 291 131-480 16-338 (517)
58 KOG1129 TPR repeat-containing 99.2 1.3E-08 2.9E-13 89.1 22.1 236 176-442 222-459 (478)
59 KOG1915 Cell cycle control pro 99.2 3.2E-06 6.9E-11 78.2 38.0 397 37-479 92-539 (677)
60 KOG0495 HAT repeat protein [RN 99.2 1.4E-06 3E-11 83.7 36.5 368 108-490 472-894 (913)
61 KOG1840 Kinesin light chain [C 99.1 5.1E-08 1.1E-12 94.1 24.7 254 115-404 199-477 (508)
62 KOG1840 Kinesin light chain [C 99.1 5.9E-08 1.3E-12 93.7 24.4 242 233-474 198-477 (508)
63 COG3063 PilF Tfp pilus assembl 99.1 2.4E-07 5.1E-12 77.7 24.3 204 274-481 37-241 (250)
64 KOG0547 Translocase of outer m 99.1 1.2E-07 2.6E-12 87.7 24.0 214 218-440 345-565 (606)
65 PRK11189 lipoprotein NlpI; Pro 99.0 2.3E-07 5E-12 85.7 25.3 213 218-442 45-266 (296)
66 PF12569 NARP1: NMDA receptor- 99.0 6.1E-06 1.3E-10 81.0 35.8 274 94-405 19-333 (517)
67 KOG1915 Cell cycle control pro 99.0 1.5E-05 3.2E-10 74.0 35.0 366 95-478 89-502 (677)
68 PRK11189 lipoprotein NlpI; Pro 98.9 1.7E-06 3.6E-11 80.0 27.3 221 248-479 40-268 (296)
69 KOG2047 mRNA splicing factor [ 98.9 3.5E-05 7.6E-10 74.2 35.6 129 68-205 125-276 (835)
70 KOG1173 Anaphase-promoting com 98.9 2.8E-06 6E-11 80.4 28.0 271 131-459 256-534 (611)
71 KOG0495 HAT repeat protein [RN 98.9 6.8E-05 1.5E-09 72.5 42.8 230 235-475 551-781 (913)
72 KOG2047 mRNA splicing factor [ 98.9 4.3E-05 9.3E-10 73.6 35.5 294 86-404 93-452 (835)
73 cd05804 StaR_like StaR_like; a 98.9 1.2E-05 2.6E-10 77.0 33.0 225 247-476 93-336 (355)
74 KOG1173 Anaphase-promoting com 98.9 3.6E-05 7.7E-10 73.1 34.4 277 173-480 240-522 (611)
75 KOG1174 Anaphase-promoting com 98.9 5.4E-05 1.2E-09 69.1 33.0 281 172-487 227-511 (564)
76 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.6E-12 86.4 16.5 232 233-482 34-271 (290)
77 KOG4162 Predicted calmodulin-b 98.9 3.5E-05 7.6E-10 75.8 33.5 361 111-485 319-792 (799)
78 COG3063 PilF Tfp pilus assembl 98.8 1E-05 2.3E-10 68.1 25.2 207 236-451 37-244 (250)
79 KOG1174 Anaphase-promoting com 98.8 1.7E-05 3.8E-10 72.2 27.3 275 107-442 224-501 (564)
80 PF12854 PPR_1: PPR repeat 98.8 1E-08 2.2E-13 59.7 4.3 34 171-204 1-34 (34)
81 cd05804 StaR_like StaR_like; a 98.8 7.6E-05 1.7E-09 71.4 33.5 204 234-441 114-336 (355)
82 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.3E-13 59.5 3.9 33 228-260 1-33 (34)
83 KOG1070 rRNA processing protei 98.7 1.7E-05 3.6E-10 82.7 27.7 234 233-476 1457-1700(1710)
84 KOG4340 Uncharacterized conser 98.7 9.7E-06 2.1E-10 70.7 21.1 182 118-338 13-209 (459)
85 KOG1914 mRNA cleavage and poly 98.7 0.00041 8.9E-09 65.8 37.3 153 323-478 347-503 (656)
86 KOG0624 dsRNA-activated protei 98.6 0.00036 7.8E-09 62.4 31.7 308 175-493 36-387 (504)
87 PLN02789 farnesyltranstransfer 98.6 0.00016 3.5E-09 67.0 28.1 235 237-481 40-306 (320)
88 KOG1070 rRNA processing protei 98.6 8E-05 1.7E-09 77.9 27.5 248 95-399 1441-1693(1710)
89 KOG3785 Uncharacterized conser 98.6 0.00054 1.2E-08 61.6 28.9 200 239-450 290-497 (557)
90 TIGR03302 OM_YfiO outer membra 98.5 1.9E-05 4.1E-10 70.7 20.1 189 269-478 30-234 (235)
91 KOG1156 N-terminal acetyltrans 98.5 0.0013 2.8E-08 63.9 37.5 363 95-477 57-469 (700)
92 PF04733 Coatomer_E: Coatomer 98.5 6.1E-06 1.3E-10 75.3 16.3 225 177-441 35-265 (290)
93 KOG1128 Uncharacterized conser 98.5 6.9E-05 1.5E-09 73.4 23.6 240 172-458 393-634 (777)
94 KOG1128 Uncharacterized conser 98.5 1.3E-05 2.8E-10 78.3 18.4 222 230-476 394-616 (777)
95 KOG0985 Vesicle coat protein c 98.5 0.00071 1.5E-08 68.8 30.7 289 76-402 947-1245(1666)
96 PRK04841 transcriptional regul 98.5 0.002 4.3E-08 70.1 37.1 279 183-479 458-763 (903)
97 KOG3081 Vesicle coat complex C 98.4 0.00032 6.9E-09 60.6 23.3 231 234-482 41-277 (299)
98 KOG1156 N-terminal acetyltrans 98.4 0.0025 5.4E-08 62.0 32.5 313 131-479 53-437 (700)
99 TIGR03302 OM_YfiO outer membra 98.4 7.8E-05 1.7E-09 66.7 20.7 186 233-441 32-232 (235)
100 PLN02789 farnesyltranstransfer 98.4 0.00086 1.9E-08 62.2 27.5 214 179-424 39-267 (320)
101 PRK10370 formate-dependent nit 98.4 0.00012 2.5E-09 63.1 20.1 119 320-441 52-173 (198)
102 KOG1125 TPR repeat-containing 98.4 3.9E-05 8.4E-10 73.1 17.9 226 241-477 292-528 (579)
103 PRK14720 transcript cleavage f 98.4 0.00028 6.1E-09 73.0 25.2 172 173-371 26-198 (906)
104 PRK14720 transcript cleavage f 98.3 0.00022 4.7E-09 73.9 24.0 130 233-370 30-177 (906)
105 KOG3060 Uncharacterized conser 98.3 0.00089 1.9E-08 57.5 23.3 190 247-442 25-221 (289)
106 KOG4162 Predicted calmodulin-b 98.3 0.0066 1.4E-07 60.4 38.1 374 110-489 257-762 (799)
107 KOG2376 Signal recognition par 98.3 0.0052 1.1E-07 59.2 33.8 123 358-482 357-493 (652)
108 COG5010 TadD Flp pilus assembl 98.2 0.00023 4.9E-09 61.5 17.9 131 233-369 99-229 (257)
109 PRK15359 type III secretion sy 98.2 0.0001 2.2E-09 60.0 15.3 95 237-336 27-121 (144)
110 PRK15179 Vi polysaccharide bio 98.2 0.00095 2.1E-08 68.4 25.4 183 230-425 82-268 (694)
111 COG5010 TadD Flp pilus assembl 98.2 0.00031 6.6E-09 60.7 18.4 159 238-403 70-228 (257)
112 KOG2376 Signal recognition par 98.2 0.0078 1.7E-07 58.1 36.9 413 22-473 24-517 (652)
113 KOG4340 Uncharacterized conser 98.2 0.00015 3.2E-09 63.5 15.7 233 229-474 5-268 (459)
114 PRK10370 formate-dependent nit 98.2 0.00017 3.8E-09 62.0 16.4 119 247-371 52-173 (198)
115 COG4783 Putative Zn-dependent 98.1 0.0015 3.2E-08 61.6 22.9 185 269-478 271-456 (484)
116 PRK04841 transcriptional regul 98.1 0.0079 1.7E-07 65.5 32.5 234 240-476 458-720 (903)
117 KOG1914 mRNA cleavage and poly 98.1 0.0099 2.1E-07 56.8 34.2 117 358-476 347-464 (656)
118 TIGR00756 PPR pentatricopeptid 98.1 5.6E-06 1.2E-10 48.7 4.4 31 345-375 3-33 (35)
119 KOG1125 TPR repeat-containing 98.1 0.0031 6.7E-08 60.6 24.5 155 173-333 348-524 (579)
120 TIGR00756 PPR pentatricopeptid 98.1 7.2E-06 1.6E-10 48.3 4.6 33 414-446 2-34 (35)
121 KOG3617 WD40 and TPR repeat-co 98.1 0.0015 3.3E-08 65.2 22.6 220 176-439 756-994 (1416)
122 PRK15179 Vi polysaccharide bio 98.1 0.0013 2.8E-08 67.5 23.4 186 169-390 78-268 (694)
123 KOG0548 Molecular co-chaperone 98.1 0.006 1.3E-07 58.2 25.6 168 311-482 228-427 (539)
124 PF10037 MRP-S27: Mitochondria 98.1 6.6E-05 1.4E-09 71.3 12.8 124 302-425 61-186 (429)
125 KOG3785 Uncharacterized conser 98.1 0.0082 1.8E-07 54.3 31.3 344 117-477 58-491 (557)
126 KOG0985 Vesicle coat protein c 98.1 0.017 3.7E-07 59.3 29.6 248 176-476 1103-1370(1666)
127 KOG3616 Selective LIM binding 98.1 0.0043 9.2E-08 61.3 24.7 138 240-402 738-875 (1636)
128 KOG3617 WD40 and TPR repeat-co 98.0 0.0045 9.6E-08 62.0 24.8 301 96-476 745-1109(1416)
129 COG4783 Putative Zn-dependent 98.0 0.0088 1.9E-07 56.5 25.7 138 244-406 316-454 (484)
130 PF10037 MRP-S27: Mitochondria 98.0 9.3E-05 2E-09 70.3 13.1 127 228-355 60-186 (429)
131 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 47.1 4.5 32 414-445 3-34 (34)
132 KOG0624 dsRNA-activated protei 98.0 0.01 2.2E-07 53.5 30.0 305 52-406 38-370 (504)
133 PRK15359 type III secretion sy 98.0 0.0006 1.3E-08 55.4 16.0 90 349-440 31-120 (144)
134 KOG2053 Mitochondrial inherita 98.0 0.023 5.1E-07 57.6 39.9 157 114-302 76-256 (932)
135 TIGR02552 LcrH_SycD type III s 98.0 0.0005 1.1E-08 55.3 15.5 94 275-370 20-113 (135)
136 KOG3616 Selective LIM binding 98.0 0.00083 1.8E-08 66.0 18.9 150 314-476 739-911 (1636)
137 TIGR02552 LcrH_SycD type III s 97.9 0.00075 1.6E-08 54.3 15.4 107 233-346 16-122 (135)
138 PF08579 RPM2: Mitochondrial r 97.9 0.00016 3.4E-09 53.9 9.6 41 349-389 32-73 (120)
139 KOG0548 Molecular co-chaperone 97.9 0.024 5.1E-07 54.3 31.1 212 238-459 228-471 (539)
140 KOG3081 Vesicle coat complex C 97.9 0.013 2.9E-07 50.9 26.5 166 227-406 101-271 (299)
141 PF09976 TPR_21: Tetratricopep 97.9 0.0012 2.5E-08 53.9 15.7 128 236-367 14-143 (145)
142 KOG3060 Uncharacterized conser 97.9 0.013 2.9E-07 50.6 25.2 171 173-372 47-221 (289)
143 KOG1127 TPR repeat-containing 97.9 0.024 5.3E-07 58.2 26.8 299 176-486 525-889 (1238)
144 PF09976 TPR_21: Tetratricopep 97.9 0.0013 2.9E-08 53.6 15.5 126 344-472 14-143 (145)
145 PF08579 RPM2: Mitochondrial r 97.9 0.00033 7.2E-09 52.2 10.4 80 381-460 29-117 (120)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00083 1.8E-08 63.6 15.9 124 180-334 172-295 (395)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00089 1.9E-08 63.4 15.9 120 312-438 174-294 (395)
148 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 43.1 3.5 23 346-368 4-26 (31)
149 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.2E-09 43.0 3.5 29 309-337 2-30 (31)
150 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0017 3.7E-08 50.7 13.0 101 380-480 5-109 (119)
151 PF05843 Suf: Suppressor of fo 97.7 0.0014 3.1E-08 59.9 14.1 133 344-479 3-139 (280)
152 PF06239 ECSIT: Evolutionarily 97.6 0.0015 3.2E-08 55.2 12.4 120 113-261 45-166 (228)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0031 6.8E-08 49.2 14.0 100 236-336 4-105 (119)
154 cd00189 TPR Tetratricopeptide 97.6 0.0018 3.8E-08 47.8 11.7 93 238-335 4-96 (100)
155 cd00189 TPR Tetratricopeptide 97.6 0.0015 3.2E-08 48.2 10.9 93 382-476 5-97 (100)
156 PF06239 ECSIT: Evolutionarily 97.5 0.0027 5.9E-08 53.6 12.6 83 270-352 45-148 (228)
157 PF05843 Suf: Suppressor of fo 97.4 0.0045 9.7E-08 56.7 13.9 144 235-386 2-149 (280)
158 PRK10866 outer membrane biogen 97.4 0.048 1E-06 48.6 20.0 182 272-474 32-239 (243)
159 KOG1127 TPR repeat-containing 97.4 0.14 3E-06 53.0 24.6 223 249-480 473-704 (1238)
160 PF14938 SNAP: Soluble NSF att 97.3 0.017 3.7E-07 53.0 16.7 192 236-458 37-246 (282)
161 PRK02603 photosystem I assembl 97.3 0.027 5.9E-07 47.4 16.4 93 233-328 34-127 (172)
162 PF04840 Vps16_C: Vps16, C-ter 97.3 0.16 3.5E-06 47.1 24.7 111 342-472 177-287 (319)
163 PRK02603 photosystem I assembl 97.2 0.027 6E-07 47.4 15.7 91 271-362 34-126 (172)
164 PF04840 Vps16_C: Vps16, C-ter 97.2 0.18 3.8E-06 46.9 27.2 127 307-459 177-303 (319)
165 PF12895 Apc3: Anaphase-promot 97.2 0.00069 1.5E-08 49.3 5.1 79 356-436 3-82 (84)
166 PF12895 Apc3: Anaphase-promot 97.2 0.0006 1.3E-08 49.6 4.8 81 390-472 2-83 (84)
167 PRK10866 outer membrane biogen 97.2 0.11 2.3E-06 46.4 19.9 184 233-439 31-239 (243)
168 PRK10153 DNA-binding transcrip 97.2 0.035 7.5E-07 55.3 18.3 61 343-405 421-481 (517)
169 PLN03088 SGT1, suppressor of 97.2 0.012 2.5E-07 56.0 14.4 102 349-454 9-110 (356)
170 PLN03088 SGT1, suppressor of 97.2 0.013 2.8E-07 55.7 14.4 93 240-337 8-100 (356)
171 PF14938 SNAP: Soluble NSF att 97.1 0.045 9.8E-07 50.3 17.1 172 179-370 37-224 (282)
172 PRK15363 pathogenicity island 97.1 0.024 5.3E-07 45.7 13.0 98 234-336 35-132 (157)
173 CHL00033 ycf3 photosystem I as 97.1 0.014 3E-07 49.0 12.4 62 344-405 37-100 (168)
174 PF13432 TPR_16: Tetratricopep 97.1 0.0034 7.4E-08 42.9 7.2 60 419-479 4-63 (65)
175 PF07079 DUF1347: Protein of u 97.0 0.35 7.6E-06 45.8 29.5 197 272-474 298-522 (549)
176 PRK15363 pathogenicity island 97.0 0.022 4.8E-07 46.0 11.7 87 351-439 44-130 (157)
177 PF14559 TPR_19: Tetratricopep 96.9 0.0046 9.9E-08 42.7 6.9 61 245-311 2-62 (68)
178 PF03704 BTAD: Bacterial trans 96.9 0.053 1.1E-06 44.2 14.4 122 178-310 4-139 (146)
179 CHL00033 ycf3 photosystem I as 96.9 0.044 9.5E-07 45.9 14.2 114 359-473 16-139 (168)
180 PF03704 BTAD: Bacterial trans 96.9 0.034 7.3E-07 45.3 12.9 130 233-380 2-139 (146)
181 PF14559 TPR_19: Tetratricopep 96.9 0.0055 1.2E-07 42.3 7.0 57 423-480 2-58 (68)
182 PF13414 TPR_11: TPR repeat; P 96.9 0.0065 1.4E-07 42.0 7.3 66 411-477 2-68 (69)
183 PF13525 YfiO: Outer membrane 96.9 0.15 3.3E-06 44.1 17.4 82 381-466 114-197 (203)
184 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.42 9.1E-06 45.2 31.1 144 342-489 397-549 (660)
185 PRK10803 tol-pal system protei 96.9 0.028 6.2E-07 50.5 13.0 102 379-482 145-252 (263)
186 PF13525 YfiO: Outer membrane 96.9 0.21 4.5E-06 43.3 18.0 183 236-432 7-198 (203)
187 KOG2053 Mitochondrial inherita 96.8 0.72 1.6E-05 47.5 35.5 219 96-372 26-256 (932)
188 PRK10153 DNA-binding transcrip 96.8 0.14 3.1E-06 51.1 18.7 137 303-442 333-483 (517)
189 KOG1538 Uncharacterized conser 96.8 0.51 1.1E-05 46.7 21.2 90 341-441 746-846 (1081)
190 PF13281 DUF4071: Domain of un 96.7 0.34 7.5E-06 45.5 19.0 79 274-352 143-227 (374)
191 PF12688 TPR_5: Tetratrico pep 96.7 0.097 2.1E-06 40.6 13.1 87 351-439 10-102 (120)
192 PF12688 TPR_5: Tetratrico pep 96.7 0.15 3.4E-06 39.5 14.1 20 245-264 12-31 (120)
193 PF13432 TPR_16: Tetratricopep 96.7 0.012 2.6E-07 40.1 7.3 58 240-301 3-60 (65)
194 KOG2796 Uncharacterized conser 96.6 0.23 5E-06 43.4 15.9 130 238-371 181-315 (366)
195 COG4235 Cytochrome c biogenesi 96.6 0.22 4.9E-06 44.6 16.2 112 376-489 155-269 (287)
196 PF13414 TPR_11: TPR repeat; P 96.6 0.016 3.5E-07 40.0 7.5 64 233-300 2-66 (69)
197 PF12921 ATP13: Mitochondrial 96.5 0.043 9.3E-07 43.0 10.3 79 307-385 2-96 (126)
198 KOG0553 TPR repeat-containing 96.5 0.027 5.8E-07 50.1 10.0 100 282-385 91-190 (304)
199 PF12921 ATP13: Mitochondrial 96.5 0.038 8.2E-07 43.3 10.0 54 407-460 47-101 (126)
200 KOG1538 Uncharacterized conser 96.4 0.43 9.3E-06 47.1 18.1 89 376-475 746-845 (1081)
201 KOG2041 WD40 repeat protein [G 96.4 0.29 6.3E-06 48.7 16.9 190 174-402 689-903 (1189)
202 COG4700 Uncharacterized protei 96.3 0.5 1.1E-05 39.1 19.2 101 305-405 87-188 (251)
203 KOG1130 Predicted G-alpha GTPa 96.3 0.13 2.9E-06 47.8 13.3 270 131-439 29-342 (639)
204 PRK10803 tol-pal system protei 96.3 0.099 2.1E-06 47.1 12.6 102 179-301 145-246 (263)
205 COG4235 Cytochrome c biogenesi 96.3 0.38 8.3E-06 43.1 15.8 98 271-370 155-255 (287)
206 KOG0553 TPR repeat-containing 96.2 0.066 1.4E-06 47.7 10.7 101 350-455 89-190 (304)
207 COG3898 Uncharacterized membra 96.2 1.1 2.3E-05 41.8 28.5 321 86-476 60-392 (531)
208 KOG2796 Uncharacterized conser 96.2 0.17 3.6E-06 44.3 12.6 133 309-442 179-316 (366)
209 PF13371 TPR_9: Tetratricopept 96.0 0.063 1.4E-06 37.5 8.1 56 422-478 5-60 (73)
210 KOG2280 Vacuolar assembly/sort 95.9 1.9 4E-05 43.7 20.1 114 340-472 682-795 (829)
211 PF13281 DUF4071: Domain of un 95.9 1.6 3.5E-05 41.2 22.1 85 234-318 141-228 (374)
212 KOG1130 Predicted G-alpha GTPa 95.8 0.13 2.9E-06 47.7 11.1 132 344-475 197-343 (639)
213 PF09205 DUF1955: Domain of un 95.8 0.66 1.4E-05 36.1 14.9 65 414-479 88-152 (161)
214 COG4700 Uncharacterized protei 95.7 1 2.2E-05 37.4 19.0 156 240-402 62-218 (251)
215 PF13371 TPR_9: Tetratricopept 95.7 0.1 2.2E-06 36.4 8.0 56 242-301 3-58 (73)
216 PF13424 TPR_12: Tetratricopep 95.6 0.031 6.6E-07 39.8 5.3 64 413-476 6-75 (78)
217 PF04053 Coatomer_WDAD: Coatom 95.6 0.46 9.9E-06 46.4 14.7 134 307-473 295-428 (443)
218 KOG0550 Molecular chaperone (D 95.6 1.2 2.6E-05 41.8 16.2 155 315-478 177-352 (486)
219 PF13424 TPR_12: Tetratricopep 95.5 0.06 1.3E-06 38.2 6.4 64 235-299 6-73 (78)
220 smart00299 CLH Clathrin heavy 95.4 1.2 2.5E-05 35.9 16.0 84 312-403 12-95 (140)
221 PRK15331 chaperone protein Sic 95.3 0.75 1.6E-05 37.6 12.5 85 354-440 49-133 (165)
222 COG4105 ComL DNA uptake lipopr 95.3 1.9 4.1E-05 38.0 20.7 178 283-481 45-238 (254)
223 KOG3941 Intermediate in Toll s 95.1 0.34 7.4E-06 42.8 10.7 104 305-427 65-173 (406)
224 PRK15331 chaperone protein Sic 95.1 1.1 2.4E-05 36.6 12.9 91 314-406 44-134 (165)
225 PF10300 DUF3808: Protein of u 94.8 2.3 4.9E-05 42.2 17.1 60 242-301 275-334 (468)
226 KOG3941 Intermediate in Toll s 94.8 0.29 6.3E-06 43.3 9.4 104 341-463 66-174 (406)
227 KOG2114 Vacuolar assembly/sort 94.7 3.6 7.8E-05 42.4 17.9 178 179-404 336-517 (933)
228 COG1729 Uncharacterized protei 94.7 0.83 1.8E-05 40.5 12.1 105 379-484 144-252 (262)
229 COG5107 RNA14 Pre-mRNA 3'-end 94.6 1.8 3.9E-05 41.2 14.5 145 273-423 398-546 (660)
230 PF10300 DUF3808: Protein of u 94.5 3.4 7.4E-05 41.0 17.5 166 310-478 191-378 (468)
231 PF09205 DUF1955: Domain of un 94.5 1.8 3.9E-05 33.8 13.4 138 244-409 12-152 (161)
232 PF13512 TPR_18: Tetratricopep 94.4 1.5 3.3E-05 34.9 11.9 120 344-482 13-134 (142)
233 KOG2041 WD40 repeat protein [G 94.3 6.7 0.00015 39.6 29.9 205 68-297 679-903 (1189)
234 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.84 1.8E-05 43.8 12.0 65 305-371 73-141 (453)
235 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 2.2 4.7E-05 41.1 14.7 66 231-301 72-141 (453)
236 PF13170 DUF4003: Protein of u 94.2 4.5 9.8E-05 37.2 21.3 131 220-352 83-227 (297)
237 KOG2114 Vacuolar assembly/sort 93.9 9.1 0.0002 39.6 20.3 141 52-204 368-517 (933)
238 COG1729 Uncharacterized protei 93.8 1.3 2.7E-05 39.4 11.4 99 236-336 144-244 (262)
239 COG4649 Uncharacterized protei 93.7 3.4 7.4E-05 34.0 14.1 136 233-371 58-196 (221)
240 PF13170 DUF4003: Protein of u 93.6 6 0.00013 36.4 21.8 131 288-420 78-225 (297)
241 PF04184 ST7: ST7 protein; In 93.5 7.9 0.00017 37.7 18.2 164 239-419 173-338 (539)
242 PF08631 SPO22: Meiosis protei 93.5 5.9 0.00013 36.2 28.0 175 131-341 5-191 (278)
243 PF13428 TPR_14: Tetratricopep 93.5 0.27 6E-06 30.2 5.1 36 449-484 3-38 (44)
244 smart00299 CLH Clathrin heavy 93.4 3.3 7.3E-05 33.2 16.2 84 277-368 12-95 (140)
245 PF07035 Mic1: Colon cancer-as 93.4 3.9 8.4E-05 33.8 15.5 136 218-370 13-148 (167)
246 PF08631 SPO22: Meiosis protei 93.3 6.4 0.00014 36.0 26.2 132 187-336 3-150 (278)
247 KOG2280 Vacuolar assembly/sort 93.2 11 0.00024 38.5 29.0 286 181-476 441-773 (829)
248 KOG0543 FKBP-type peptidyl-pro 93.1 3 6.4E-05 39.3 13.1 139 183-335 214-354 (397)
249 KOG1585 Protein required for f 93.1 5.7 0.00012 34.7 15.9 201 179-401 33-251 (308)
250 KOG2610 Uncharacterized conser 92.9 3.8 8.2E-05 37.5 12.9 116 247-367 116-234 (491)
251 KOG4555 TPR repeat-containing 92.6 3.9 8.6E-05 31.9 11.7 91 351-442 52-145 (175)
252 COG3629 DnrI DNA-binding trans 92.6 4.5 9.7E-05 36.6 13.2 78 235-316 154-236 (280)
253 KOG1941 Acetylcholine receptor 92.3 9.5 0.00021 35.5 15.3 228 246-474 18-273 (518)
254 COG0457 NrfG FOG: TPR repeat [ 92.3 6.8 0.00015 33.8 29.8 229 247-479 36-268 (291)
255 KOG0543 FKBP-type peptidyl-pro 92.2 3.6 7.7E-05 38.8 12.4 106 240-370 214-319 (397)
256 PF07079 DUF1347: Protein of u 92.0 12 0.00026 36.0 25.3 270 186-481 15-332 (549)
257 PF13512 TPR_18: Tetratricopep 91.8 5.6 0.00012 31.8 13.0 83 239-322 15-97 (142)
258 PF07035 Mic1: Colon cancer-as 91.8 6.5 0.00014 32.5 14.8 27 331-357 18-44 (167)
259 PF13428 TPR_14: Tetratricopep 91.8 0.45 9.8E-06 29.2 4.4 37 178-214 2-38 (44)
260 PF10602 RPN7: 26S proteasome 91.7 3.2 6.8E-05 35.0 10.7 65 235-300 37-101 (177)
261 COG3629 DnrI DNA-binding trans 91.5 2.4 5.3E-05 38.2 10.3 62 307-369 153-214 (280)
262 COG1747 Uncharacterized N-term 91.4 15 0.00033 35.9 22.8 177 304-487 63-245 (711)
263 PF04053 Coatomer_WDAD: Coatom 91.3 15 0.00032 36.1 16.3 134 115-333 295-428 (443)
264 PRK11906 transcriptional regul 91.2 15 0.00033 35.6 15.9 116 248-370 318-435 (458)
265 KOG1585 Protein required for f 91.2 9.9 0.00021 33.3 16.7 206 234-469 31-249 (308)
266 COG3898 Uncharacterized membra 90.9 14 0.00031 34.8 24.4 232 231-475 115-357 (531)
267 COG3118 Thioredoxin domain-con 90.6 13 0.00028 33.7 17.9 146 242-394 142-289 (304)
268 KOG4555 TPR repeat-containing 90.6 7 0.00015 30.6 11.7 92 242-337 51-145 (175)
269 KOG4570 Uncharacterized conser 90.3 3.7 8E-05 37.2 10.0 131 239-371 24-164 (418)
270 KOG0550 Molecular chaperone (D 90.0 18 0.00038 34.4 22.0 165 232-406 166-350 (486)
271 COG3118 Thioredoxin domain-con 90.0 14 0.00031 33.4 18.3 141 316-461 143-286 (304)
272 PF13176 TPR_7: Tetratricopept 90.0 0.63 1.4E-05 27.1 3.6 26 179-204 1-26 (36)
273 KOG2610 Uncharacterized conser 90.0 16 0.00034 33.7 16.3 152 188-367 114-272 (491)
274 KOG1550 Extracellular protein 89.9 25 0.00054 35.9 18.9 181 250-443 228-428 (552)
275 PF02284 COX5A: Cytochrome c o 89.9 6.3 0.00014 29.2 9.2 64 415-478 11-76 (108)
276 COG4105 ComL DNA uptake lipopr 89.7 14 0.0003 32.8 20.5 81 236-318 37-117 (254)
277 PF13176 TPR_7: Tetratricopept 89.7 0.85 1.9E-05 26.5 4.0 24 237-260 2-25 (36)
278 PF04184 ST7: ST7 protein; In 89.7 22 0.00047 34.9 16.9 101 379-479 261-378 (539)
279 KOG1550 Extracellular protein 89.6 26 0.00057 35.7 19.7 246 218-477 231-505 (552)
280 PF13929 mRNA_stabil: mRNA sta 89.5 16 0.00034 33.1 19.3 62 304-365 199-261 (292)
281 PF10602 RPN7: 26S proteasome 89.5 3.6 7.8E-05 34.6 9.2 100 378-477 37-143 (177)
282 KOG4570 Uncharacterized conser 89.5 1.6 3.4E-05 39.5 7.1 93 172-264 59-165 (418)
283 PF13762 MNE1: Mitochondrial s 89.4 9.8 0.00021 30.5 11.2 109 212-320 15-128 (145)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 3.4 7.3E-05 30.2 7.3 49 427-475 22-70 (103)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 4.5 9.7E-05 29.6 7.9 61 171-231 36-96 (103)
286 PF13174 TPR_6: Tetratricopept 88.9 0.81 1.8E-05 25.6 3.6 30 450-479 3-32 (33)
287 PF02284 COX5A: Cytochrome c o 88.8 4.3 9.3E-05 30.1 7.7 62 169-230 37-98 (108)
288 COG0457 NrfG FOG: TPR repeat [ 88.5 15 0.00033 31.5 26.8 204 233-442 58-266 (291)
289 PHA02875 ankyrin repeat protei 87.7 27 0.00059 34.0 15.6 17 185-201 7-23 (413)
290 COG3947 Response regulator con 87.7 21 0.00045 32.3 18.4 117 172-299 222-340 (361)
291 KOG2063 Vacuolar assembly/sort 87.2 33 0.00072 36.6 16.0 27 237-263 507-533 (877)
292 PF00515 TPR_1: Tetratricopept 86.9 2.3 5E-05 24.0 4.7 30 449-478 3-32 (34)
293 COG4649 Uncharacterized protei 86.4 17 0.00038 30.0 13.5 51 424-474 144-194 (221)
294 PF07719 TPR_2: Tetratricopept 86.2 2.4 5.1E-05 23.8 4.5 30 449-478 3-32 (34)
295 PF02259 FAT: FAT domain; Int 85.1 35 0.00075 32.3 23.4 66 375-440 144-212 (352)
296 PRK15180 Vi polysaccharide bio 84.5 8.4 0.00018 37.1 9.3 88 353-442 334-421 (831)
297 KOG1941 Acetylcholine receptor 84.0 38 0.00081 31.8 15.7 166 273-438 84-272 (518)
298 KOG2396 HAT (Half-A-TPR) repea 82.9 50 0.0011 32.4 32.7 99 375-476 457-559 (568)
299 PF13374 TPR_10: Tetratricopep 82.7 3.5 7.5E-05 24.5 4.4 28 235-262 3-30 (42)
300 PF13431 TPR_17: Tetratricopep 82.6 1.9 4.1E-05 24.7 2.8 22 446-467 12-33 (34)
301 KOG4234 TPR repeat-containing 82.1 30 0.00065 29.5 10.5 91 350-442 103-198 (271)
302 PF13374 TPR_10: Tetratricopep 82.0 3.8 8.3E-05 24.2 4.4 30 448-477 3-32 (42)
303 PRK09687 putative lyase; Provi 81.7 42 0.00092 30.7 27.9 202 233-458 67-278 (280)
304 COG2976 Uncharacterized protei 81.5 32 0.00069 29.2 15.0 97 383-484 95-196 (207)
305 PF00515 TPR_1: Tetratricopept 81.3 4.9 0.00011 22.6 4.4 28 236-263 3-30 (34)
306 PF13929 mRNA_stabil: mRNA sta 81.1 43 0.00093 30.4 17.9 136 323-458 144-289 (292)
307 PF00637 Clathrin: Region in C 80.8 0.56 1.2E-05 37.9 0.3 86 347-439 12-97 (143)
308 PRK11906 transcriptional regul 80.6 59 0.0013 31.7 16.2 132 235-370 252-400 (458)
309 KOG0276 Vesicle coat complex C 80.4 26 0.00056 35.1 11.1 97 318-435 648-744 (794)
310 PF00637 Clathrin: Region in C 80.3 0.62 1.4E-05 37.6 0.4 128 313-462 13-140 (143)
311 PHA02875 ankyrin repeat protei 78.6 68 0.0015 31.2 15.7 152 240-412 71-230 (413)
312 PF13431 TPR_17: Tetratricopep 78.4 3.5 7.6E-05 23.6 3.0 20 272-291 13-32 (34)
313 KOG1464 COP9 signalosome, subu 78.3 50 0.0011 29.5 15.5 52 248-299 41-92 (440)
314 PF07719 TPR_2: Tetratricopept 78.2 7 0.00015 21.8 4.4 28 236-263 3-30 (34)
315 PF13181 TPR_8: Tetratricopept 78.1 7.1 0.00015 21.8 4.4 30 449-478 3-32 (34)
316 PF09613 HrpB1_HrpK: Bacterial 77.6 38 0.00082 27.8 13.6 53 245-301 21-73 (160)
317 PF07163 Pex26: Pex26 protein; 77.2 37 0.0008 30.6 10.1 89 239-330 88-181 (309)
318 PF11846 DUF3366: Domain of un 77.1 15 0.00032 31.4 8.0 55 424-478 120-175 (193)
319 COG4455 ImpE Protein of avirul 76.8 22 0.00048 30.7 8.4 77 236-316 3-81 (273)
320 KOG4077 Cytochrome c oxidase, 76.8 28 0.00061 27.0 8.1 63 169-231 76-138 (149)
321 COG1747 Uncharacterized N-term 76.6 82 0.0018 31.2 26.7 164 233-406 65-234 (711)
322 COG2909 MalT ATP-dependent tra 76.5 1.1E+02 0.0024 32.5 24.6 225 245-472 426-684 (894)
323 KOG1920 IkappaB kinase complex 76.2 1.3E+02 0.0028 33.2 22.1 31 174-205 788-820 (1265)
324 PF07163 Pex26: Pex26 protein; 75.8 47 0.001 30.0 10.4 90 276-365 87-181 (309)
325 PF13762 MNE1: Mitochondrial s 75.8 40 0.00087 27.1 11.9 83 380-462 42-130 (145)
326 TIGR03504 FimV_Cterm FimV C-te 75.3 8.4 0.00018 23.6 4.2 26 453-478 5-30 (44)
327 PF10345 Cohesin_load: Cohesin 74.9 1.1E+02 0.0024 31.8 19.4 165 274-439 61-252 (608)
328 PF09613 HrpB1_HrpK: Bacterial 74.3 47 0.001 27.2 13.1 20 317-336 54-73 (160)
329 COG2909 MalT ATP-dependent tra 74.3 1.3E+02 0.0027 32.1 30.6 198 283-480 426-651 (894)
330 PF10345 Cohesin_load: Cohesin 73.9 1.2E+02 0.0025 31.6 33.1 196 98-333 40-251 (608)
331 PRK15180 Vi polysaccharide bio 73.6 95 0.0021 30.4 15.1 126 240-372 295-421 (831)
332 PF04097 Nic96: Nup93/Nic96; 73.3 1.2E+02 0.0026 31.5 18.5 89 313-406 264-356 (613)
333 KOG2297 Predicted translation 72.8 77 0.0017 29.0 19.8 21 342-362 321-341 (412)
334 COG4455 ImpE Protein of avirul 72.7 31 0.00067 29.8 8.2 77 275-352 4-82 (273)
335 KOG1464 COP9 signalosome, subu 72.5 73 0.0016 28.6 18.3 180 218-398 46-252 (440)
336 KOG2297 Predicted translation 72.3 79 0.0017 29.0 18.9 172 229-431 161-340 (412)
337 KOG4648 Uncharacterized conser 71.4 12 0.00026 34.5 5.9 89 350-441 105-194 (536)
338 PF07721 TPR_4: Tetratricopept 71.4 6.6 0.00014 20.7 2.8 21 451-471 5-25 (26)
339 KOG0276 Vesicle coat complex C 71.3 57 0.0012 32.9 10.8 103 186-334 646-748 (794)
340 COG3947 Response regulator con 71.0 84 0.0018 28.7 16.7 53 279-332 286-338 (361)
341 TIGR03504 FimV_Cterm FimV C-te 70.9 11 0.00023 23.2 3.9 25 418-442 5-29 (44)
342 PRK09687 putative lyase; Provi 70.5 87 0.0019 28.7 28.2 228 232-485 35-272 (280)
343 PF13181 TPR_8: Tetratricopept 70.4 14 0.0003 20.6 4.3 27 236-262 3-29 (34)
344 PF11848 DUF3368: Domain of un 70.0 20 0.00043 22.5 5.2 33 423-455 13-45 (48)
345 KOG4077 Cytochrome c oxidase, 69.8 51 0.0011 25.7 10.7 52 430-481 67-118 (149)
346 PF11207 DUF2989: Protein of u 69.4 73 0.0016 27.3 16.6 42 355-396 153-197 (203)
347 TIGR02561 HrpB1_HrpK type III 68.4 62 0.0013 26.2 10.2 19 318-336 55-73 (153)
348 PF02259 FAT: FAT domain; Int 68.3 1.1E+02 0.0023 28.9 24.1 66 305-370 144-212 (352)
349 PF14689 SPOB_a: Sensor_kinase 67.8 13 0.00028 24.9 4.2 22 417-438 28-49 (62)
350 PF10579 Rapsyn_N: Rapsyn N-te 66.1 24 0.00053 24.8 5.3 47 424-470 18-66 (80)
351 KOG2063 Vacuolar assembly/sort 65.9 1.5E+02 0.0032 32.0 13.2 117 274-390 506-639 (877)
352 KOG0890 Protein kinase of the 65.6 3.1E+02 0.0066 33.1 22.8 65 413-480 1671-1735(2382)
353 COG5159 RPN6 26S proteasome re 65.4 1.1E+02 0.0023 27.8 10.6 22 381-402 129-150 (421)
354 KOG0403 Neoplastic transformat 63.2 1.5E+02 0.0033 28.8 15.5 150 180-335 217-408 (645)
355 COG0735 Fur Fe2+/Zn2+ uptake r 61.6 46 0.001 26.9 7.2 31 384-414 27-57 (145)
356 KOG4234 TPR repeat-containing 61.6 1E+02 0.0023 26.4 9.9 95 185-301 103-197 (271)
357 TIGR02561 HrpB1_HrpK type III 60.8 89 0.0019 25.3 12.1 54 245-302 21-74 (153)
358 smart00028 TPR Tetratricopepti 60.4 15 0.00033 19.2 3.2 26 450-475 4-29 (34)
359 KOG1920 IkappaB kinase complex 60.0 2.8E+02 0.0061 30.8 26.4 133 278-438 914-1052(1265)
360 TIGR01503 MthylAspMut_E methyl 58.4 73 0.0016 31.1 8.7 174 286-474 68-270 (480)
361 cd08819 CARD_MDA5_2 Caspase ac 57.7 70 0.0015 23.1 7.2 14 426-439 50-63 (88)
362 PF11846 DUF3366: Domain of un 57.6 28 0.00061 29.7 5.7 55 91-149 120-174 (193)
363 PF11848 DUF3368: Domain of un 56.5 47 0.001 20.8 5.1 26 286-311 16-41 (48)
364 PF10579 Rapsyn_N: Rapsyn N-te 56.4 36 0.00078 24.0 4.8 46 389-434 18-65 (80)
365 cd08819 CARD_MDA5_2 Caspase ac 56.3 74 0.0016 23.0 7.6 67 360-432 20-86 (88)
366 TIGR02508 type_III_yscG type I 56.1 83 0.0018 23.5 8.9 11 389-399 51-61 (115)
367 KOG0687 26S proteasome regulat 54.8 1.8E+02 0.004 27.0 14.0 20 286-305 36-55 (393)
368 PF11838 ERAP1_C: ERAP1-like C 54.7 1.8E+02 0.0039 27.0 18.5 152 314-473 136-305 (324)
369 PF04910 Tcf25: Transcriptiona 54.3 2E+02 0.0044 27.5 18.3 102 383-486 109-232 (360)
370 PF04097 Nic96: Nup93/Nic96; 53.5 2.8E+02 0.0061 28.8 22.0 226 239-474 263-532 (613)
371 PF14669 Asp_Glu_race_2: Putat 53.2 1.4E+02 0.0031 25.4 11.8 66 268-333 4-77 (233)
372 KOG4648 Uncharacterized conser 53.0 1E+02 0.0022 28.8 8.3 55 184-262 104-159 (536)
373 PF10475 DUF2450: Protein of u 52.7 1.4E+02 0.003 27.6 9.7 30 341-370 126-155 (291)
374 KOG1258 mRNA processing protei 52.7 2.7E+02 0.0058 28.3 24.6 27 236-262 153-179 (577)
375 KOG2908 26S proteasome regulat 52.6 2E+02 0.0044 26.9 10.3 89 238-326 79-176 (380)
376 PF14689 SPOB_a: Sensor_kinase 51.6 40 0.00087 22.5 4.4 49 427-477 5-53 (62)
377 PF09986 DUF2225: Uncharacteri 51.5 1.7E+02 0.0036 25.6 10.5 66 416-481 122-199 (214)
378 PHA03100 ankyrin repeat protei 51.1 1.7E+02 0.0037 29.1 11.0 22 181-202 36-57 (480)
379 PRK10564 maltose regulon perip 50.8 34 0.00073 31.3 5.1 30 415-444 260-289 (303)
380 TIGR02508 type_III_yscG type I 50.5 1E+02 0.0023 23.0 8.1 85 392-483 20-104 (115)
381 COG2178 Predicted RNA-binding 50.5 1.3E+02 0.0029 25.5 8.0 92 386-478 38-152 (204)
382 PF10366 Vps39_1: Vacuolar sor 50.1 1.1E+02 0.0024 23.2 7.6 27 414-440 41-67 (108)
383 PRK10292 hypothetical protein; 49.9 75 0.0016 21.2 6.2 59 191-260 2-60 (69)
384 PF04190 DUF410: Protein of un 49.5 2E+02 0.0044 26.0 20.1 25 341-365 89-113 (260)
385 COG5108 RPO41 Mitochondrial DN 49.1 1.6E+02 0.0035 30.3 9.6 90 277-369 33-130 (1117)
386 PRK11639 zinc uptake transcrip 48.4 94 0.002 25.9 7.1 62 368-430 17-78 (169)
387 PF04910 Tcf25: Transcriptiona 47.9 2.6E+02 0.0056 26.8 23.5 147 132-300 7-167 (360)
388 PF11663 Toxin_YhaV: Toxin wit 47.7 18 0.0004 28.4 2.6 18 429-446 112-129 (140)
389 COG5108 RPO41 Mitochondrial DN 46.6 1.2E+02 0.0025 31.2 8.3 90 347-439 33-130 (1117)
390 PF11663 Toxin_YhaV: Toxin wit 46.0 28 0.00061 27.4 3.3 30 390-421 108-137 (140)
391 PRK09462 fur ferric uptake reg 45.8 1.1E+02 0.0025 24.7 7.2 62 367-429 7-69 (148)
392 KOG3807 Predicted membrane pro 45.6 2.6E+02 0.0056 26.1 9.9 130 250-393 232-364 (556)
393 PF12862 Apc5: Anaphase-promot 45.6 1.2E+02 0.0026 22.2 6.8 21 280-300 49-69 (94)
394 KOG0890 Protein kinase of the 45.4 6.5E+02 0.014 30.7 22.6 64 377-443 1670-1733(2382)
395 KOG4507 Uncharacterized conser 44.7 1.4E+02 0.0031 30.2 8.4 89 353-442 618-706 (886)
396 PF03745 DUF309: Domain of unk 44.6 94 0.002 20.8 5.8 47 318-364 10-61 (62)
397 cd00280 TRFH Telomeric Repeat 44.5 2E+02 0.0042 24.4 10.1 20 386-405 120-139 (200)
398 KOG4521 Nuclear pore complex, 43.8 5.1E+02 0.011 29.0 14.4 151 242-399 928-1124(1480)
399 PF06552 TOM20_plant: Plant sp 43.5 2E+02 0.0044 24.2 12.5 94 180-301 31-136 (186)
400 COG5159 RPN6 26S proteasome re 43.4 2.6E+02 0.0057 25.5 11.0 21 452-472 130-150 (421)
401 PF11207 DUF2989: Protein of u 43.3 2.2E+02 0.0047 24.6 17.1 72 251-326 123-197 (203)
402 PRK10564 maltose regulon perip 42.6 52 0.0011 30.1 5.0 35 305-339 254-289 (303)
403 PF14853 Fis1_TPR_C: Fis1 C-te 41.9 94 0.002 20.0 4.8 23 455-477 9-31 (53)
404 cd00280 TRFH Telomeric Repeat 41.7 2.1E+02 0.0047 24.2 7.9 64 250-319 85-155 (200)
405 KOG4521 Nuclear pore complex, 41.6 5.5E+02 0.012 28.8 16.6 176 183-365 926-1125(1480)
406 KOG0686 COP9 signalosome, subu 40.4 3.5E+02 0.0076 26.2 14.9 177 235-420 151-352 (466)
407 PF09454 Vps23_core: Vps23 cor 40.4 1.2E+02 0.0025 20.6 5.8 47 112-164 5-51 (65)
408 COG0735 Fur Fe2+/Zn2+ uptake r 40.2 1.4E+02 0.003 24.1 6.8 11 325-335 38-48 (145)
409 PHA02798 ankyrin-like protein; 39.7 3.8E+02 0.0083 26.9 11.4 83 290-376 87-175 (489)
410 cd07153 Fur_like Ferric uptake 39.6 65 0.0014 24.6 4.7 48 382-429 5-52 (116)
411 COG4259 Uncharacterized protei 39.5 1.6E+02 0.0034 21.9 6.7 50 431-480 56-105 (121)
412 COG2976 Uncharacterized protei 39.2 2.5E+02 0.0054 24.1 14.6 129 307-442 54-189 (207)
413 PF09986 DUF2225: Uncharacteri 38.8 2.2E+02 0.0048 24.8 8.2 52 96-150 142-196 (214)
414 KOG4567 GTPase-activating prot 38.7 2E+02 0.0043 26.6 7.8 42 328-369 264-305 (370)
415 KOG4567 GTPase-activating prot 37.5 1.9E+02 0.0042 26.6 7.6 71 362-437 263-343 (370)
416 PRK09857 putative transposase; 37.1 2.5E+02 0.0054 25.9 8.7 58 388-446 217-274 (292)
417 PF09477 Type_III_YscG: Bacter 37.0 1.9E+02 0.004 22.0 7.9 14 323-336 22-35 (116)
418 PF06552 TOM20_plant: Plant sp 37.0 1.9E+02 0.004 24.4 6.9 76 250-338 51-138 (186)
419 PF10255 Paf67: RNA polymerase 36.8 4.1E+02 0.0088 25.9 12.3 59 311-369 126-191 (404)
420 PF09454 Vps23_core: Vps23 cor 36.8 92 0.002 21.1 4.3 49 232-284 6-54 (65)
421 KOG0686 COP9 signalosome, subu 36.4 4.1E+02 0.0088 25.8 14.2 174 273-454 151-351 (466)
422 PRK11639 zinc uptake transcrip 36.0 2.6E+02 0.0055 23.3 8.0 65 331-396 15-79 (169)
423 KOG2058 Ypt/Rab GTPase activat 35.7 4.4E+02 0.0095 25.9 12.4 107 156-264 224-347 (436)
424 PF06855 DUF1250: Protein of u 35.4 52 0.0011 20.4 2.8 41 102-146 2-42 (46)
425 PF09670 Cas_Cas02710: CRISPR- 35.4 4.2E+02 0.0091 25.6 11.2 56 315-371 139-198 (379)
426 PF02847 MA3: MA3 domain; Int 35.1 2E+02 0.0042 21.7 7.5 21 278-298 8-28 (113)
427 KOG1586 Protein required for f 35.0 3.3E+02 0.0071 24.2 14.3 215 252-484 3-232 (288)
428 PF04090 RNA_pol_I_TF: RNA pol 34.3 2.4E+02 0.0052 24.2 7.4 28 379-406 43-70 (199)
429 PF09868 DUF2095: Uncharacteri 34.1 1.8E+02 0.0039 22.2 5.7 38 418-456 67-104 (128)
430 PF11817 Foie-gras_1: Foie gra 33.8 2.4E+02 0.0051 25.3 7.9 82 358-441 161-247 (247)
431 PF12926 MOZART2: Mitotic-spin 33.7 1.8E+02 0.004 21.0 7.9 41 328-368 29-69 (88)
432 PHA03100 ankyrin repeat protei 33.6 4.9E+02 0.011 25.8 12.5 13 187-199 80-92 (480)
433 PF07575 Nucleopor_Nup85: Nup8 33.5 1.3E+02 0.0028 30.9 6.9 25 115-144 149-173 (566)
434 PF02847 MA3: MA3 domain; Int 31.3 2.2E+02 0.0047 21.5 6.4 20 313-332 8-27 (113)
435 KOG3364 Membrane protein invol 31.2 2.8E+02 0.006 22.2 9.4 67 411-477 31-101 (149)
436 PF01475 FUR: Ferric uptake re 31.2 62 0.0013 25.0 3.3 34 428-461 23-56 (120)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 30.7 2.6E+02 0.0057 21.8 8.9 43 430-472 81-124 (126)
438 PF07575 Nucleopor_Nup85: Nup8 30.6 1.2E+02 0.0027 31.1 6.2 63 375-439 403-465 (566)
439 KOG4507 Uncharacterized conser 30.2 4.2E+02 0.009 27.1 9.1 136 231-371 568-705 (886)
440 PRK09857 putative transposase; 29.7 3.9E+02 0.0084 24.7 8.7 64 347-411 211-274 (292)
441 cd07153 Fur_like Ferric uptake 29.4 1.7E+02 0.0038 22.2 5.6 49 347-395 5-53 (116)
442 COG2178 Predicted RNA-binding 29.4 3.6E+02 0.0079 23.0 8.7 63 237-300 32-97 (204)
443 COG4785 NlpI Lipoprotein NlpI, 29.0 4E+02 0.0087 23.4 16.8 181 248-443 79-268 (297)
444 KOG2908 26S proteasome regulat 29.0 5E+02 0.011 24.5 9.7 59 347-405 80-143 (380)
445 KOG1258 mRNA processing protei 28.9 6.4E+02 0.014 25.8 30.8 184 232-426 295-489 (577)
446 PF12926 MOZART2: Mitotic-spin 28.7 2.3E+02 0.005 20.5 8.1 43 293-335 29-71 (88)
447 KOG4279 Serine/threonine prote 28.7 7.3E+02 0.016 26.3 15.8 122 251-377 180-320 (1226)
448 PF01475 FUR: Ferric uptake re 28.4 1.5E+02 0.0033 22.8 5.1 44 383-426 13-56 (120)
449 smart00386 HAT HAT (Half-A-TPR 28.3 1E+02 0.0022 16.3 4.0 28 248-279 1-28 (33)
450 PF14669 Asp_Glu_race_2: Putat 27.8 3.9E+02 0.0085 22.9 15.9 25 277-301 137-161 (233)
451 PF12862 Apc5: Anaphase-promot 27.6 2.4E+02 0.0053 20.5 6.8 20 315-334 49-68 (94)
452 PRK09462 fur ferric uptake reg 27.6 3.3E+02 0.0071 21.9 7.9 64 331-395 6-70 (148)
453 KOG0687 26S proteasome regulat 27.1 5.3E+02 0.012 24.2 15.6 103 178-300 105-209 (393)
454 smart00638 LPD_N Lipoprotein N 26.9 7.1E+02 0.015 25.6 22.1 234 248-486 285-535 (574)
455 PF09868 DUF2095: Uncharacteri 26.4 2.9E+02 0.0063 21.1 5.7 25 240-264 67-91 (128)
456 PF11768 DUF3312: Protein of u 26.4 7E+02 0.015 25.3 11.0 60 311-370 412-472 (545)
457 PF11838 ERAP1_C: ERAP1-like C 26.4 5.2E+02 0.011 23.9 19.5 116 358-478 146-272 (324)
458 PF07840 FadR_C: FadR C-termin 25.4 2.9E+02 0.0062 22.9 6.2 20 185-204 126-145 (164)
459 PF09670 Cas_Cas02710: CRISPR- 25.1 6.3E+02 0.014 24.4 12.4 56 280-336 139-198 (379)
460 KOG2659 LisH motif-containing 24.5 4.9E+02 0.011 22.9 9.6 69 231-301 23-93 (228)
461 COG2987 HutU Urocanate hydrata 24.4 3.6E+02 0.0078 26.4 7.3 158 319-498 215-405 (561)
462 TIGR01228 hutU urocanate hydra 24.3 2E+02 0.0044 28.4 5.8 165 320-498 207-396 (545)
463 COG2405 Predicted nucleic acid 24.2 1.6E+02 0.0034 23.5 4.2 31 425-455 122-152 (157)
464 PRK14958 DNA polymerase III su 24.1 7.7E+02 0.017 25.0 12.4 79 226-307 192-280 (509)
465 PF10366 Vps39_1: Vacuolar sor 23.9 3.3E+02 0.0071 20.7 7.6 26 310-335 42-67 (108)
466 KOG1839 Uncharacterized protei 23.8 1.1E+03 0.024 26.8 11.8 156 281-436 941-1123(1236)
467 PF08424 NRDE-2: NRDE-2, neces 23.3 6.2E+02 0.013 23.7 17.9 119 288-408 47-185 (321)
468 PF05944 Phage_term_smal: Phag 23.3 3.8E+02 0.0083 21.3 7.4 31 235-265 49-79 (132)
469 COG0790 FOG: TPR repeat, SEL1 23.0 5.8E+02 0.012 23.2 22.5 198 286-493 55-283 (292)
470 COG2256 MGS1 ATPase related to 22.5 7.3E+02 0.016 24.2 15.4 36 321-356 263-298 (436)
471 PHA02537 M terminase endonucle 21.7 5.7E+02 0.012 22.6 8.4 31 235-265 84-114 (230)
472 PF10475 DUF2450: Protein of u 21.6 6.4E+02 0.014 23.2 12.2 27 179-205 129-155 (291)
473 PF08424 NRDE-2: NRDE-2, neces 21.5 6.7E+02 0.015 23.4 17.7 119 250-373 47-185 (321)
474 PF11768 DUF3312: Protein of u 21.5 8.7E+02 0.019 24.7 11.2 61 345-405 411-472 (545)
475 COG0819 TenA Putative transcri 21.3 5.6E+02 0.012 22.4 9.4 32 223-254 98-129 (218)
476 KOG2582 COP9 signalosome, subu 21.1 7.3E+02 0.016 23.7 19.2 27 112-139 72-98 (422)
477 COG4785 NlpI Lipoprotein NlpI, 21.1 5.8E+02 0.012 22.5 16.4 158 307-475 99-265 (297)
478 PRK14958 DNA polymerase III su 21.0 8.8E+02 0.019 24.6 12.2 84 105-205 190-273 (509)
479 TIGR03581 EF_0839 conserved hy 20.9 2.7E+02 0.0059 24.2 5.3 62 377-438 163-234 (236)
480 PRK05414 urocanate hydratase; 20.8 2.7E+02 0.0059 27.7 6.0 165 320-498 216-405 (556)
481 PHA02798 ankyrin-like protein; 20.7 5.3E+02 0.011 25.8 8.6 86 253-341 88-175 (489)
482 PF10963 DUF2765: Protein of u 20.6 2.8E+02 0.006 19.9 4.5 32 408-439 12-43 (83)
483 COG4003 Uncharacterized protei 20.5 3.3E+02 0.0071 19.4 5.3 26 239-264 36-61 (98)
484 PRK14963 DNA polymerase III su 20.3 9.1E+02 0.02 24.5 11.1 79 225-306 188-275 (504)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-56 Score=463.69 Aligned_cols=454 Identities=13% Similarity=0.180 Sum_probs=366.4
Q ss_pred cchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCCC--CCCHHHHH
Q 036198 9 PTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGV--PLTTDSVV 85 (499)
Q Consensus 9 p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~--~~~~~~~~ 85 (499)
+|...|..++..+ +.+.+..+......+... ...+++..++..++..+.+.+.+.+|++.+.. .++...+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn 441 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFN 441 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhC------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 4455566666666 666666665433332211 12345566677778888888888877765532 25555666
Q ss_pred HHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Q 036198 86 GVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163 (499)
Q Consensus 86 ~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~ 163 (499)
.++..+. ...+.|.++|+.| .+.|+.||..+|+.+|.+|+ +.|+++.|.++|++|.+.|. .++..+++.++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~----k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~ 515 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCA----KSGKVDAMFEVFHEMVNAGV-EANVHTFGALID 515 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Confidence 6665543 3346788888876 45678888888888888888 88888888888888888775 456666666666
Q ss_pred HHHHh-------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCCCChhhHHHH----------
Q 036198 164 QYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN---KVKPNANTYNIL---------- 217 (499)
Q Consensus 164 ~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~p~~~~~~~l---------- 217 (499)
.|++. ...++.||..+|+.+|.+|++.|++++|.++|++|.. ++.||..+|+++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 55443 5567889999999999999999999999999999864 478999999888
Q ss_pred --HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036198 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295 (499)
Q Consensus 218 --a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 295 (499)
|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---v~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---VKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999988 7899999999999999999999999999
Q ss_pred HHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 036198 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375 (499)
Q Consensus 296 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 375 (499)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999889999
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----C-------------------CCHHHHH
Q 036198 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----C-------------------SKVEEAC 432 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~ 432 (499)
|..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998865432 1 1246788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|....
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 899999999999999999999988888888888888888776543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-56 Score=462.92 Aligned_cols=394 Identities=18% Similarity=0.266 Sum_probs=269.3
Q ss_pred HHHHHHHHHhccCCCchHHHHHhhCC------CC-CCHHHHHHHHHcc--CCChHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 036198 51 VAKLYEAIIDNSNAYDNMEKALDSLG------VP-LTTDSVVGVLQRF--QFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121 (499)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~al~~~~------~~-~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l 121 (499)
+...|..++..+++.|++.+|++.+. .. ++.-....++..+ ......|+.+|+.+.. ||..+|+.+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~L 443 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNML 443 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHH
Confidence 34557777777778999999977653 21 2222222233222 2345678999988742 899999999
Q ss_pred HHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH-------------hhhcCCCCCHHHHHHHHHHHH
Q 036198 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE-------------KIKVKTQPEINALNLLLDALC 188 (499)
Q Consensus 122 i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~li~~~~ 188 (499)
|.+|+ +.|+++.|.++|++|.+.|. .++..+++.++..|++ |...|+.||..+|+++|.+|+
T Consensus 444 L~a~~----k~g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 444 MSVCA----SSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHH----hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999 99999999999999999985 3455555555544433 255566666666666666666
Q ss_pred hCCChHHHHHHHHHhhc-CCCCChhhHHHH------------HHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 189 KCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQ--MGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l------------a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
+.|++++|.++|++|.+ ++.||..+|+.+ |.++|++|.. .|+.||..+|+++|.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 66666666666666654 466666666666 6666666654 45666666666666666666666666
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
.++|+.|.+.| +.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 599 ~elf~~M~e~g---i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 599 KEVYQMIHEYN---IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666666 566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH
Q 036198 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413 (499)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 413 (499)
.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666543
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-54 Score=456.38 Aligned_cols=442 Identities=13% Similarity=0.146 Sum_probs=299.6
Q ss_pred cccCcchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHh------hCCC
Q 036198 5 HLVSPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALD------SLGV 77 (499)
Q Consensus 5 ~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~------~~~~ 77 (499)
+.-.||+++||.+|+++ +.+..+.++.....+.. .+..|+..+|+.+++++++.+++..+.+ ..+.
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-------~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-------AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 44467888888888887 65555555543332211 1445666777777777777666554433 2355
Q ss_pred CCCHHHHHHHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccH
Q 036198 78 PLTTDSVVGVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155 (499)
Q Consensus 78 ~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 155 (499)
.++...++.++..+. ...+.|.++|+.+. .||..+||.+|.+|+ +.|++++|.++|++|.+.|. .++.
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~----~~g~~~eAl~lf~~M~~~g~-~Pd~ 288 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYF----ENGECLEGLELFFTMRELSV-DPDL 288 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHH----hCCCHHHHHHHHHHHHHcCC-CCCh
Confidence 555555555554442 23456777777663 357777788887777 77777778888887777765 5566
Q ss_pred HHHHHHHHHHHHh-------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH-----
Q 036198 156 DVLLMILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----- 217 (499)
Q Consensus 156 ~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l----- 217 (499)
.++..++.++... .+.|+.||..+||++|.+|++.|++++|.++|++|.. ||..+|+.+
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~ 365 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE 365 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH
Confidence 6777777665433 5567777777777777777777777777777777753 577777777
Q ss_pred -------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 218 -------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.| ..|+..+|+++|.+|++.|++++
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG---LISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHcCCHHH
Confidence 67777777777777777777777777777777777777777777666 55666666666666666666666
Q ss_pred HHHHHHHHHHc------------------------------CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036198 291 CFSLLGHMINS------------------------------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 291 a~~~~~~m~~~------------------------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 340 (499)
|.++|++|.+. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 66666655421 244555555555555544444444444444444555555
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
|..++++||.+|++.|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 5555555555556666666666666554 46777888888888888888888888888888888888888888888
Q ss_pred HHHhCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 421 GLFDCSKVEEACFLLEEVV-NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 8888888888888888887 56888888888888888888888888888888874
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-53 Score=438.72 Aligned_cols=441 Identities=15% Similarity=0.172 Sum_probs=391.0
Q ss_pred CcchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHh------hCCCCCC
Q 036198 8 SPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALD------SLGVPLT 80 (499)
Q Consensus 8 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~------~~~~~~~ 80 (499)
.++.++|+.+|.++ +.+....++.....+.. ..+..++..+|+.++.++++.+++..+.+ ..+..++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~------~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~ 157 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEA------GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHh------cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc
Confidence 34566899999998 65665566544433221 11234677899999999999998876543 4477788
Q ss_pred HHHHHHHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHH
Q 036198 81 TDSVVGVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158 (499)
Q Consensus 81 ~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 158 (499)
...+..++.... ...+.|.++|+.+. .||..+||.+|.+|+ +.|++++|.++|++|.+.|. .++..++
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~----~~g~~~~A~~lf~~M~~~g~-~p~~~t~ 227 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLV----DAGNYREAFALFREMWEDGS-DAEPRTF 227 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHH----HCcCHHHHHHHHHHHHHhCC-CCChhhH
Confidence 888888876653 34578999999874 379999999999999 99999999999999999886 5677888
Q ss_pred HHHHHHHHHh-------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH--------
Q 036198 159 LMILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217 (499)
Q Consensus 159 ~~~l~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l-------- 217 (499)
..+++++... .+.|+.||..+||+||++|+++|++++|.++|++|.. +|..+||.+
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCC
Confidence 8888877653 6778999999999999999999999999999999975 699999999
Q ss_pred ----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036198 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293 (499)
Q Consensus 218 ----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 293 (499)
|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.| ..||..+|++++.+|++.|++++|.+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---FPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC---CCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999 78999999999999999999999999
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CC
Q 036198 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE-VG 372 (499)
Q Consensus 294 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~ 372 (499)
+|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|..++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999963 789999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 373 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.+. .+..+|..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~ 533 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVV 533 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHH
Confidence 9999999999999999999999999998876 5689999999999999999999999999999975542 24779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+++.|++.|++++|.++++.|++.+-
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-52 Score=443.18 Aligned_cols=460 Identities=16% Similarity=0.164 Sum_probs=391.6
Q ss_pred cccCcchhhHHHHHHHh-ccCccchhhccCCccccccccccC-CCcchHHHHHHHHHhccCCCchHHHHHhhCCCCC--C
Q 036198 5 HLVSPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESS-DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPL--T 80 (499)
Q Consensus 5 ~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~--~ 80 (499)
..+.||.+||+++++++ ..+++....+ .+.... .+..++..+|+.++..|++.|+++.|.+.+.... +
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d 252 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGRE--------VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHH--------HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence 46899999999999998 4444333221 111111 1345667889999999999999999988776543 3
Q ss_pred HHHHHHHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHH
Q 036198 81 TDSVVGVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158 (499)
Q Consensus 81 ~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 158 (499)
...++.++..+. ...+.|+++|+.|. ..|+.||..||+.+|.+|+ +.|+++.|.+++..|.+.|. .++..++
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~----~~g~~~~a~~l~~~~~~~g~-~~d~~~~ 326 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACE----LLGDERLGREMHGYVVKTGF-AVDVSVC 326 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHHHHHhCC-ccchHHH
Confidence 345666666553 34578999999874 5689999999999999999 89999999999999999886 5677888
Q ss_pred HHHHHHHHHh---------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCCCChhhHHHH-----------
Q 036198 159 LMILKQYTEK---------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217 (499)
Q Consensus 159 ~~~l~~~~~~---------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l----------- 217 (499)
+.++..|.+. ...=..||..+||++|.+|++.|++++|.++|++|.+ ++.||..||+.+
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 8888887765 2222368899999999999999999999999999975 689999999988
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---------------------------CCC
Q 036198 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST---------------------------ISS 269 (499)
Q Consensus 218 -a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------------------------~~~ 269 (499)
+.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.+.. ..+
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~ 486 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 8889999999999999888888888888888888888887776543210 157
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 036198 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349 (499)
Q Consensus 270 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 349 (499)
||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ .||..+||++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999987 47999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh-HCCCCCCHHHHHHHHHHHHhCCCH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD-KRGCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~ 428 (499)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++.+|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999998 679999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
++|.+++++| .++||..+|++|+.+|...|+.+.++...+++.+..+.....+..
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 9999999998 378999999999999999999999999999998886665444333
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-51 Score=421.34 Aligned_cols=363 Identities=16% Similarity=0.197 Sum_probs=239.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-------
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK------- 168 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~------- 168 (499)
+.|+++|+|+....++.||..+|+.++.+|+ +.++++.+.+++..|.+.|.. ++..+++.++..|.+.
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~----~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACI----ALKSIRCVKAVYWHVESSGFE-PDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHhcCCCHHHHH
Confidence 3444444444333334444444444444444 444444444444444444432 2333444444443322
Q ss_pred --hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCCCChhhHHHH------------HHHHHHHHHHcCCCCC
Q 036198 169 --IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPD 233 (499)
Q Consensus 169 --~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~ 233 (499)
...-..||..+||++|.+|++.|++++|.++|++|.+ +..||..||+.+ +.+++..+.+.|+.||
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 1111236777777777777777777777777777764 577777777666 5666677777777777
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
..+|+.++.+|++.|++++|.++|++|. .+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7777777777777777777777777663 346677777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
+.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCH
Confidence 777777777777777777777777777777777777777777777777777777643 5667777777777777777
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN-KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777764 46777777777777777777777777777666
Q ss_pred HH
Q 036198 473 MR 474 (499)
Q Consensus 473 m~ 474 (499)
|.
T Consensus 488 ~~ 489 (697)
T PLN03081 488 AP 489 (697)
T ss_pred CC
Confidence 53
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=3.1e-21 Score=207.95 Aligned_cols=432 Identities=14% Similarity=0.104 Sum_probs=320.6
Q ss_pred HHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCC----C-CCCHHHHHHH-
Q 036198 15 AVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG----V-PLTTDSVVGV- 87 (499)
Q Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~----~-~~~~~~~~~~- 87 (499)
..++..+ ..++.+.+......+. ...|++...+..+...+...++.++|.+.+. . +-+...+..+
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 506 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLE--------KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--------HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3344444 6666666655444322 2233445678888888888899888876552 1 1222222211
Q ss_pred -HHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Q 036198 88 -LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166 (499)
Q Consensus 88 -l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~ 166 (499)
+..-....+.|.+.|+.+.... +.+..++..+...+. +.|++++|..+++++...+ +.+...+..+...+.
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYL----RTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHH
Confidence 1222455677888888765432 246778888888888 8899999999999987766 333333333333332
Q ss_pred Hh------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHH
Q 036198 167 EK------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222 (499)
Q Consensus 167 ~~------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~ 222 (499)
.. .....+.+...|..+...+...|++++|.+.|+++.+..+.+...+..+ |...+
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 1123455678899999999999999999999998876555555555555 77778
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036198 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302 (499)
Q Consensus 223 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 302 (499)
+.+.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|..+.+.+
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH----PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 7777653 2367788888999999999999999999988875 4567788888888999999999999999988764
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..+++.
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 555777778888999999999999999888764 3477888888888999999999999999988765 356778888
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
+...+...|+ .+|..+++++.+.. +-+...+..+...+...|++++|.++++++.+.+.. +..++..+..++.+.|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 8899999998 88999999887753 235556777888888999999999999999988754 88888899999999999
Q ss_pred HHHHHHHHHHHH
Q 036198 463 LGAIHKLSDHMR 474 (499)
Q Consensus 463 ~~~a~~~~~~m~ 474 (499)
.++|.+++++|.
T Consensus 887 ~~~A~~~~~~~~ 898 (899)
T TIGR02917 887 KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHh
Confidence 999999998885
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=9.3e-21 Score=204.26 Aligned_cols=363 Identities=11% Similarity=0.033 Sum_probs=202.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH----------
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY---------- 165 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~---------- 165 (499)
+.|..+++.+... .+++..+|..+...+. ..|++++|.+.|+++.+.. +.....+..+...+
T Consensus 448 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 448 DKALAAAKKLEKK--QPDNASLHNLLGAIYL----GKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHHHHHHHHHHHh--CCCCcHHHHHHHHHHH----hCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3445555443321 2234556666666666 6666666666666665544 22222222211111
Q ss_pred ---HHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCC
Q 036198 166 ---TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230 (499)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~ 230 (499)
.+... ..+.+..++..+...+.+.|+.++|...|+++....+.+...+..+ |..+++.+.+..
T Consensus 520 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 520 QRFEKVLT-IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHH-hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 11111 1223455566666666666666666666666554433343333333 555555555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
+.+...|..+..++.+.|++++|...|+.+.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ----PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 2355566666666666666666666666665543 2344555666666666666666666666665542 3345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+.+.+ |+..++..+..++.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 666666666666666666666665553 2345555566666666666666666666666543 3445555566666666
Q ss_pred CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .+|.+++
T Consensus 750 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 66666666666665542 2345556666666666666666666666666554 2355566666666666666 5566666
Q ss_pred HHHHhhcCh
Q 036198 471 DHMRKFYNP 479 (499)
Q Consensus 471 ~~m~~~~~~ 479 (499)
+++.+..+.
T Consensus 827 ~~~~~~~~~ 835 (899)
T TIGR02917 827 EKALKLAPN 835 (899)
T ss_pred HHHHhhCCC
Confidence 666655443
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.7e-19 Score=173.53 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=241.2
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+... |+
T Consensus 47 ~~~~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~ 100 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD------------------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR--PD 100 (389)
T ss_pred hcCChHHHHHHHHHHHhcC------------------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CC
Confidence 6789999999999999876 235668899999999999999999999887652 10
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
.. .......+..+...|.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++
T Consensus 101 ~~-----------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~ 159 (389)
T PRK11788 101 LT-----------------REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG----DFAEGALQQLLEIYQQEKDWQK 159 (389)
T ss_pred CC-----------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC----cchHHHHHHHHHHHHHhchHHH
Confidence 00 00023567888999999999999999999998764 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 036198 291 CFSLLGHMINSGCLPD----VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366 (499)
Q Consensus 291 a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 366 (499)
|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|+++.+... .+...+..+...+.+.|++++|.++++
T Consensus 160 A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 160 AIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALE 238 (389)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999987653322 12455677788899999999999999987642 246678888899999999999999999
Q ss_pred HHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 036198 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 367 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 446 (499)
++.+.+......+++.+..+|...|++++|...++.+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+
T Consensus 239 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~ 314 (389)
T PRK11788 239 RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPS 314 (389)
T ss_pred HHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcC
Confidence 9987643233567889999999999999999999999876 466667788899999999999999999998876 488
Q ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhc
Q 036198 447 YRKFDSYLMQLSV---IGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 447 ~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~ 477 (499)
..++..++..+.. .|+.+++..++++|.+..
T Consensus 315 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 315 LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 8899988887775 568999999999888744
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.8e-19 Score=171.82 Aligned_cols=315 Identities=15% Similarity=0.141 Sum_probs=251.9
Q ss_pred CCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHH
Q 036198 78 PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157 (499)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 157 (499)
......+..+........+.|...|..+.... +.+..++..+...+. +.|++++|..+++.+...... +.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~--~~-- 103 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPDL--TR-- 103 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCCC--CH--
Confidence 34444444444445566677888888875542 235678888989998 999999999999998875410 00
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 036198 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~ 237 (499)
......+..+...|.+.|++++|..+|+++.+. .+++..++
T Consensus 104 ----------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----------------------~~~~~~~~ 144 (389)
T PRK11788 104 ----------------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-----------------------GDFAEGAL 144 (389)
T ss_pred ----------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----------------------CcchHHHH
Confidence 012356889999999999999999999998652 23467788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT---AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..++..+.+.|++++|.+.++.+.+.+.. .+. ...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 221 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGD--SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLG 221 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHH
Confidence 99999999999999999999999887621 111 2245667778899999999999999998764 34566788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
..+.+.|++++|.++++++.+.+......+++.+..+|++.|++++|...++++.+.. |+...+..+...+.+.|+++
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHH
Confidence 9999999999999999999876433335678899999999999999999999998864 67677789999999999999
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHH
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFD---CSKVEEACFLLEEVVNKGLKLPYR 448 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 448 (499)
+|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.++++.|++.
T Consensus 300 ~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 300 AAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999998875 6899999988887774 568999999999999988887776
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.5e-15 Score=154.92 Aligned_cols=334 Identities=10% Similarity=0.028 Sum_probs=255.3
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
.-.++..+. +.|+++.|..+++....... -+...+..++.+....|++++|.
T Consensus 45 ~~~~~~~~~----~~g~~~~A~~l~~~~l~~~p------------------------~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 45 IILFAIACL----RKDETDVGLTLLSDRVLTAK------------------------NGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred HHHHHHHHH----hcCCcchhHHHhHHHHHhCC------------------------CchhHHHHHhhhHhhcCCHHHHH
Confidence 334455566 88999999999999887762 23445555666666677777777
Q ss_pred HHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
+.|+++....|.+...+..+ |...+++..... +.+...+..+...+...|++++|...++.+....
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 77777776545555554444 666666666542 2257788889999999999999999999887765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 036198 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345 (499)
Q Consensus 266 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 345 (499)
+.+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++...+.+. .+...+
T Consensus 175 ---P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~ 249 (656)
T PRK15174 175 ---PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALR 249 (656)
T ss_pred ---CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHH
Confidence 2233344333 34788999999999999988764334455566667889999999999999999988753 367788
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 346 NCFLKVLCDNKNGDE----ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 346 ~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 889999999999986 899999998754 2356788999999999999999999999998763 2245667788889
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHHh
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPY-RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQK 490 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 490 (499)
+.+.|++++|...++++...+ |+. ..+..+..++...|+.++|.+.+++..+..+......|.-...
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHH
Confidence 999999999999999998775 443 3344456788999999999999999999888877766654433
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.7e-14 Score=147.53 Aligned_cols=348 Identities=11% Similarity=-0.025 Sum_probs=261.9
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
...+.|...|+.+.. ..|+...|..+..++. +.|++++|.+.++...+..
T Consensus 141 ~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~----~l~~~~~Ai~~~~~al~l~----------------------- 190 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE---CKPDPVYYSNRAACHN----ALGDWEKVVEDTTAALELD----------------------- 190 (615)
T ss_pred CCHHHHHHHHHHHHh---cCCchHHHHHHHHHHH----HhCCHHHHHHHHHHHHHcC-----------------------
Confidence 455678888887643 3567788888888888 8999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc------------------------------CCCCChhhH--------
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKN------------------------------KVKPNANTY-------- 214 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------------~~~p~~~~~-------- 214 (499)
+.+..+|..+..+|...|++++|..-|..... ..+++...+
T Consensus 191 -p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 191 -PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 23455777777777888887777654432210 000100000
Q ss_pred -------------------------HH---------------HHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHhH
Q 036198 215 -------------------------NI---------------LGMQTLEEMIQMG-HAP-DNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 215 -------------------------~~---------------la~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~ 252 (499)
.. -|.+.|+...+.+ ..| ....|+.+..++...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 00 0455666666654 233 45678888888999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
|+..|++..+.. +-....|..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...|++
T Consensus 350 A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 350 ALADLSKSIELD----PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHcC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998864 3346788888999999999999999999998764 44678888899999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 412 (499)
..+... .+...+..+...+.+.|++++|...|++..+.. +.+...++.+...+...|++++|.+.|+...+.....+.
T Consensus 425 al~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 425 SIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 988753 256778888889999999999999999988753 234678899999999999999999999998775321111
Q ss_pred H------HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 413 D------TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 413 ~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
. .++.....+...|++++|.+++++...... .+...+..+...+...|++++|.+++++..+....
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 1 122222333446999999999999887753 34567889999999999999999999998876553
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=7.9e-15 Score=131.63 Aligned_cols=292 Identities=18% Similarity=0.304 Sum_probs=220.6
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHH----------------HHHh---------
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ----------------YTEK--------- 168 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~----------------~~~~--------- 168 (499)
.+.+=|.|+.... .|.+..+.-+|+.|.+.|. +.+...-..+++. |..+
T Consensus 115 ~V~~E~nL~kmIS-----~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~ 188 (625)
T KOG4422|consen 115 QVETENNLLKMIS-----SREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS 188 (625)
T ss_pred hhcchhHHHHHHh-----hcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc
Confidence 3556778887776 6788999999999999986 4444443333332 2222
Q ss_pred ----------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCCCChhhHHHH--------HHHHHHHHHHcC
Q 036198 169 ----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--------GMQTLEEMIQMG 229 (499)
Q Consensus 169 ----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l--------a~~~~~~m~~~g 229 (499)
...-.+.+..+|..+|.++|+--..+.|.+++++-.+ ..+.+..+||.+ ..+++.+|....
T Consensus 189 sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 189 SWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQK 268 (625)
T ss_pred ccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhh
Confidence 1112344677999999999999999999999999876 578899999998 788999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhH----HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc---
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTE----AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE-CFSLLGHMINS--- 301 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~--- 301 (499)
..||..|||+++.+.++.|+++. |.+++.+|++.| +.|+..+|..+|..+++.++..+ +..++.++...
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG---VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG---VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC---CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 99999999999999999998776 567888999999 89999999999999999888744 55555555432
Q ss_pred -CC----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 302 -GC----LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG----YPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 302 -~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.+ +.+...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|.-+..+.|+....+.....|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2245667788888889999888888776654331 2222 2345667777788888888888888887
Q ss_pred HCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
-.-..|+..+...++++..-.|.++-.-++|..+...|...+...
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 666667888888888888888888887777777776654433333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=1.6e-14 Score=135.46 Aligned_cols=349 Identities=14% Similarity=0.128 Sum_probs=260.3
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-----------hhcCCCCCHHH-HH
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-----------IKVKTQPEINA-LN 181 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~-~~ 181 (499)
-..+|+.+.+++- ..|++..|+.+++.+.+... .-.+.+..+.-++... ....+.|+... .+
T Consensus 115 ~ae~ysn~aN~~k----erg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s 188 (966)
T KOG4626|consen 115 GAEAYSNLANILK----ERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHH----HhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence 5688999999998 89999999999999998763 2222222222222211 11234454443 33
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD-NFTYNTAIDTFCKAR 248 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 248 (499)
.+.+..-..|++++|...|-+..+..+-=...|.-| |.+.|++... +.|+ ...|-.|...|...+
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHh
Confidence 344444556777777777777665433334444444 6666666654 3444 457888888899999
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHHHHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~ 327 (499)
.+++|...+.+..... +-....+..+...|-..|.++.|.+.|++..+. .|+ ...|+.|..++-..|++.+|+
T Consensus 267 ~~d~Avs~Y~rAl~lr----pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLR----PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred cchHHHHHHHHHHhcC----CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHH
Confidence 9999999998887753 335677888888888899999999999998876 344 678999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
..+......... -..+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|...+++...
T Consensus 341 ~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr- 416 (966)
T KOG4626|consen 341 DCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR- 416 (966)
T ss_pred HHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-
Confidence 999988876432 456788899999999999999999998877 3455 45788899999999999999999998876
Q ss_pred CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 407 GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 407 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+.|+ ...|+.+-..|-..|+++.|.+.+.+....+.. -...++.|...|..+|++.+|+.-++...+..|..+.
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 4665 457888888999999999999999888876521 3567888999999999999999999998887665443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=1.6e-13 Score=140.10 Aligned_cols=324 Identities=12% Similarity=0.060 Sum_probs=226.3
Q ss_pred HHHhccCCCchHHHHHhhCC-----CCCCHHHHH--HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcch
Q 036198 57 AIIDNSNAYDNMEKALDSLG-----VPLTTDSVV--GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTK 129 (499)
Q Consensus 57 ~l~~~~~~~~~~~~al~~~~-----~~~~~~~~~--~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~ 129 (499)
-++..+.+.|+..+|+..+. .+-+++.+. .+........+.|...|+.+..... .+...+..+...+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l~--- 121 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVLL--- 121 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHH---
Confidence 34455556677666665432 122222222 2223345556677777775543211 24555666666666
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCC
Q 036198 130 YKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP 209 (499)
Q Consensus 130 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 209 (499)
..|+++.|...+++..... +.+...+..+...+...|++++|...++.+...
T Consensus 122 -~~g~~~~Ai~~l~~Al~l~------------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--- 173 (656)
T PRK15174 122 -KSKQYATVADLAEQAWLAF------------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--- 173 (656)
T ss_pred -HcCCHHHHHHHHHHHHHhC------------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---
Confidence 7777777777777776654 234567777777788888888887777765431
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 036198 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289 (499)
Q Consensus 210 ~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 289 (499)
... +...+..+ ..+...|++++|...++.+.+.. ..++...+..+...+...|+++
T Consensus 174 -------------------~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~---~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 174 -------------------VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFF---ALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred -------------------CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC---CCcchhHHHHHHHHHHHCCCHH
Confidence 111 23333333 34778899999999999987764 2234455556677888999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 036198 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE----AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 365 (499)
+|...+++..+.. +.+...+..+...+...|++++ |...++...+... .+...+..+...+.+.|++++|...+
T Consensus 230 eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998764 4457777888899999999885 7899998887643 36778888999999999999999999
Q ss_pred HHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 366 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
++..+... .+...+..+..++.+.|++++|...++.+.+. .|+.. .+..+..++...|+.++|...|++..+..
T Consensus 308 ~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 308 QQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99887542 34556777888999999999999999998875 34443 33445667889999999999999988764
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=1.4e-13 Score=150.18 Aligned_cols=366 Identities=12% Similarity=0.007 Sum_probs=207.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHH------------
Q 036198 92 QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL------------ 159 (499)
Q Consensus 92 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------------ 159 (499)
....+.|...|+.+.... +.+...+..+...+. +.|++++|...|++..+..........+.
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~----~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYS----QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 455567888887765432 126677777878887 88888888888888877665443321111
Q ss_pred -------------HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------
Q 036198 160 -------------MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217 (499)
Q Consensus 160 -------------~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l--------- 217 (499)
..+..|.+.... .+.+...+..+...+...|++++|++.|++..+..+.+...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 111111111111 234567888899999999999999999999887655555555444
Q ss_pred --HHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 036198 218 --GMQTLEEMIQMGH--------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287 (499)
Q Consensus 218 --a~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~ 287 (499)
|..+++.+..... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~----P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD----PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 3333332211100 0012234556677888999999999999998875 3456778888889999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---------hHHHHHHHHHHcCCH
Q 036198 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV---------TYNCFLKVLCDNKNG 358 (499)
Q Consensus 288 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~~ 358 (499)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988653 2234444434444556667777766666543221111111 111223344445555
Q ss_pred HHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 359 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
++|.++++. .+.+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+...|...|+.++|.+.++..
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555441 11233334444445555555555555555554431 123444445555555555555555555544
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 439 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.+... .+...+..+..++...|++++|.++++++.+.
T Consensus 664 l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 664 PATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 43321 12333344444455555555555555555443
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=3e-13 Score=147.60 Aligned_cols=294 Identities=10% Similarity=-0.002 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCh--hhH----------HHH--------------HHHHHHHHHHc
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA--NTY----------NIL--------------GMQTLEEMIQM 228 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~--~~~----------~~l--------------a~~~~~~m~~~ 228 (499)
.+...+..+...+.+.|++++|+..|++..+..+.+. ..| ..+ |...+++..+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3677888999999999999999999998776422221 111 111 67777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 036198 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL---- 304 (499)
Q Consensus 229 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---- 304 (499)
.. .+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++.++|..+++.+......
T Consensus 381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 43 356677788888999999999999999888764 233444444444442 23344444444433211000
Q ss_pred ----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh-
Q 036198 305 ----PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT- 379 (499)
Q Consensus 305 ----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~- 379 (499)
.....+..+...+...|++++|.+.|++..+.... +...+..+...|.+.|++++|...++++.+... .+...
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~ 532 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQV 532 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHH
Confidence 00112223334444455555555555554443221 333444444455555555555555555443211 11111
Q ss_pred -------------------------------------------HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHH
Q 036198 380 -------------------------------------------YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416 (499)
Q Consensus 380 -------------------------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 416 (499)
+..+...+...|+.++|.++++. .+.+...+.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~ 607 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHH
Confidence 12234455666777777766652 234556677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
.+...+.+.|+.++|...+++..+... .+...+..+...+...|++++|.+.++...+..+....
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 788889999999999999999998763 36788999999999999999999999998887655443
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=5.4e-13 Score=120.01 Aligned_cols=345 Identities=15% Similarity=0.147 Sum_probs=258.3
Q ss_pred CCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHH---------HHHHhhhcCCCCCHHHHHHH
Q 036198 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK---------QYTEKIKVKTQPEINALNLL 183 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~l 183 (499)
.+..+|..+|.++| +--+.+.|.+++++-....+ ...-++++.++. ...+|....+.||..++|++
T Consensus 205 KT~et~s~mI~Gl~----K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLC----KFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHH----HHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHH
Confidence 47789999999999 88999999999999776654 566667766664 35667888899999999999
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE-AADLFEFMRT 262 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 262 (499)
+.+..+.|+++.|.+.+ .+++.+|++.|+.|...+|..+|..+++-++..+ |..+..++..
T Consensus 280 L~c~akfg~F~~ar~aa------------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAA------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHHhcchHHHHHHH------------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 99999999999988874 5568899999999999999999999999888754 5555555543
Q ss_pred ----cCCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcCH---HhHHHHHHHHHhcCCHHHHHHHH
Q 036198 263 ----KGSTIS-SPTAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCLPDV---STYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 263 ----~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
+...+. +-+..-|...++.|.+..+.+-|.++..-+... -+.|+. .-|..+....|.....+.....|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121112 224567788899999999999999987666532 123332 33667888889999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC-Cc--h------H-----H
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-EP--D------G-----A 396 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~--~------~-----a 396 (499)
+.|.-.-.-|+..+...++.+..-.|.++-.-+++..+...|..-....-.-++..+++.. +. . . |
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 9998887788999999999999999999999999999988875555544444555555443 11 0 0 1
Q ss_pred HHH-------HHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHH
Q 036198 397 FET-------WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL----KLPYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 397 ~~~-------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~ 465 (499)
..+ -.+|++. .-.....+.+.-.+.+.|+.++|.+++..+.+++- .|......-++++-....+...
T Consensus 502 ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 111 1223333 33445677777788899999999999999966542 2444455577788888999999
Q ss_pred HHHHHHHHHhhcChhHH
Q 036198 466 IHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~~ 482 (499)
|...++-|.....+..-
T Consensus 580 A~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICE 596 (625)
T ss_pred HHHHHHHHHHcCchhhh
Confidence 99999999776666544
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=7.3e-12 Score=131.32 Aligned_cols=235 Identities=11% Similarity=0.057 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~ 547 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLA 547 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHH
Confidence 34445555555554 66677777777666543 55444334444556788888888888887654 344455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+..++.+.|+.++|...++...+.+. .....+..+.......|++++|...+++..+.. |+...+..+..++.+.|+
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCC
Confidence 67778888888888888888877642 223333333344445689999999998888754 677788888888999999
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.++|...+++..+.. +-+...+..+...+...|+.++|...+++..+... -+...+..+..++...|++++|...+++
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888763 22556677777788889999999999998888753 3677888888899999999999999999
Q ss_pred HHhhcChh
Q 036198 473 MRKFYNPV 480 (499)
Q Consensus 473 m~~~~~~~ 480 (499)
..+..+..
T Consensus 703 Al~l~P~~ 710 (987)
T PRK09782 703 VIDDIDNQ 710 (987)
T ss_pred HHhcCCCC
Confidence 88766543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=1.3e-12 Score=136.48 Aligned_cols=384 Identities=11% Similarity=-0.009 Sum_probs=264.1
Q ss_pred HhccCCCchHHHHHhhC---C--CCCCHHHH--HHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhh
Q 036198 59 IDNSNAYDNMEKALDSL---G--VPLTTDSV--VGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131 (499)
Q Consensus 59 ~~~~~~~~~~~~al~~~---~--~~~~~~~~--~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 131 (499)
+....+.|+..+|++.+ . .+.+...+ ...+..-......|..+++.+.... +.+...+..+...+. .
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~----~ 95 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLA----D 95 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH----H
Confidence 33344667777776543 2 22333222 2334445666778888888764432 224666677777777 8
Q ss_pred hhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCh
Q 036198 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211 (499)
Q Consensus 132 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 211 (499)
.|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+..|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred CCCHHHHHHHHHHHHHhC------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 889999999998887765 24556 88889999999999999999999988666665
Q ss_pred hhHHHH------------HHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---hHHHHHHHHHHHcCC
Q 036198 212 NTYNIL------------GMQTLEEMIQMGHAPDN------FTYNTAIDTFC-----KARMV---TEAADLFEFMRTKGS 265 (499)
Q Consensus 212 ~~~~~l------------a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~~~ 265 (499)
..+..+ |+..++... ..|+. .....++.... ..+++ ++|++.++.+.+...
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~---~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDAN---LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 555444 333333222 12221 11122222222 22234 778888988886521
Q ss_pred CCCCCCHH-H----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 036198 266 TISSPTAK-T----YAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339 (499)
Q Consensus 266 ~~~~p~~~-~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 339 (499)
..|+.. . ....+..+...|++++|...|+.+.+.+-. |+. .-..+..+|...|++++|...|+.+.+....
T Consensus 228 --~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 228 --DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred --cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 122221 1 112244556779999999999999987532 322 2223577899999999999999998765322
Q ss_pred C---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CcC---hhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 340 P---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-----------WPS---VQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 340 p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
. ....+..+..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|+.++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 124566677788999999999999999987531 123 23456677888999999999999999
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 403 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
+.... +-+...+..+...+...|++++|++.+++..... +-+...+......+...|++++|+.+++++.+.+|...
T Consensus 385 al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 385 LAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 98762 4467788889999999999999999999998875 23466777777889999999999999999999877654
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=1.5e-12 Score=133.36 Aligned_cols=330 Identities=12% Similarity=-0.005 Sum_probs=239.9
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
+......+. +.|+++.|...|++..... |+...|..+..+|.+.|++++|+
T Consensus 130 ~k~~G~~~~----~~~~~~~Ai~~y~~al~~~-------------------------p~~~~~~n~a~~~~~l~~~~~Ai 180 (615)
T TIGR00990 130 LKEKGNKAY----RNKDFNKAIKLYSKAIECK-------------------------PDPVYYSNRAACHNALGDWEKVV 180 (615)
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHhcC-------------------------CchHHHHHHHHHHHHhCCHHHHH
Confidence 334445555 8999999999999987654 67778999999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcC----------------------------CC----CC
Q 036198 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG----------------------------HA----PD 233 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g----------------------------~~----p~ 233 (499)
+.++...+..+.+...|..+ |...+......+ .. |.
T Consensus 181 ~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 181 EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999887555555555544 322221111000 00 01
Q ss_pred HHHHHHH---------------------------HHHH------HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 036198 234 NFTYNTA---------------------------IDTF------CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280 (499)
Q Consensus 234 ~~~~~~l---------------------------i~~~------~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~ 280 (499)
....... +... ...+++++|.+.|+...+.+.. .+.....|+.+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~-~~~~a~a~~~lg~ 339 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL-GEKEAIALNLRGT 339 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 0000000 0000 1235788999999999876521 1234567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (499)
.+...|++++|...|+...+.. +-+...|..+...+...|++++|...|+...+... .+...|..+...+...|++++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999998763 23356788888899999999999999999887643 367888899999999999999
Q ss_pred HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. +-+...|+.+...+...|++++|...|++...
T Consensus 418 A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 418 AGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 999999998864 2346677888889999999999999999988752 33577888899999999999999999999887
Q ss_pred CCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 441 KGLKLPYR------KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 441 ~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.....+.. .++.....+...|++++|.+++++..+..+...
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 64321111 122222233446999999999999887765543
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-13 Score=129.18 Aligned_cols=367 Identities=14% Similarity=0.111 Sum_probs=262.9
Q ss_pred cchHHHHHHHHHhccCCCchHHHHHhhC--CCCCCHHHHHHHH---Hc--cCCChHHHHHHHHHhhcCCCCCCCHHHHHH
Q 036198 48 VSDVAKLYEAIIDNSNAYDNMEKALDSL--GVPLTTDSVVGVL---QR--FQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120 (499)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~al~~~--~~~~~~~~~~~~l---~~--~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ 120 (499)
.+.-...|+.+.+.+...|++++|+..+ .++++|..+..-+ .. ..++...|...|....+ +.|+.....+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s 188 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARS 188 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhc
Confidence 3445677888888888888888888754 3455554332222 11 12333455555554422 3345444444
Q ss_pred HHHHHhcchhhhhhHHHHHHHHHHHHHcCCCc-ccHHHHHHH----------HHHHHHhhhcCCCCC-HHHHHHHHHHHH
Q 036198 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF-VPVDVLLMI----------LKQYTEKIKVKTQPE-INALNLLLDALC 188 (499)
Q Consensus 121 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~----------l~~~~~~~~~~~~~~-~~~~~~li~~~~ 188 (499)
-+..+.+ ..|++++|...+.+..+..... ..+..+..+ ++.|.+ ...+.|+ ..+|-.|.+.|.
T Consensus 189 ~lgnLlk---a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~e--AvkldP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 189 DLGNLLK---AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEE--AVKLDPNFLDAYINLGNVYK 263 (966)
T ss_pred chhHHHH---hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHH--hhcCCCcchHHHhhHHHHHH
Confidence 4444442 5778888888887776654221 122222222 222222 2334554 357777777777
Q ss_pred hCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 036198 189 KCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (499)
..+.+++|...|.+... ..| ....+..+...|-..|.++.|+..+++..+..
T Consensus 264 e~~~~d~Avs~Y~rAl~------------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--- 316 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALN------------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--- 316 (966)
T ss_pred HHhcchHHHHHHHHHHh------------------------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---
Confidence 77777777777766543 233 45677888888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 268 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
+--...|+.|..++-..|+..+|.+.|+...... +-.....+.|...|...|.+++|..+|....+-... -...++.
T Consensus 317 -P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nN 393 (966)
T KOG4626|consen 317 -PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNN 393 (966)
T ss_pred -CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhh
Confidence 2336799999999999999999999999998763 334667888999999999999999999998775322 4567899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC-HHHHHHHHHHHHhC
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD-VDTYCVMIDGLFDC 425 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 425 (499)
|...|-++|++++|...|++... +.|+ ...|+.+-..|-..|+.+.|.+.+.+.... .|. ...++.|...|-.+
T Consensus 394 La~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDS 469 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhcc
Confidence 99999999999999999999987 5677 568999999999999999999999998875 443 45788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 426 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
|++.+|.+-+++.++.... .+..|..++.+.
T Consensus 470 Gni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred CCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 9999999999999876533 234454454443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=1.8e-11 Score=127.99 Aligned_cols=367 Identities=11% Similarity=0.056 Sum_probs=262.2
Q ss_pred CCCCCHHHHHHHHHc--cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcc
Q 036198 76 GVPLTTDSVVGVLQR--FQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV 153 (499)
Q Consensus 76 ~~~~~~~~~~~~l~~--~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 153 (499)
..++++..+...+.- -......|...+...... -..+...+..+...+. +.|++++|.++|++..+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~----~~g~~~~A~~~~~~al~~~---- 79 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYR----NLKQWQNSLTLWQKALSLE---- 79 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC----
Confidence 345677766655533 466778899888877531 1235666888888888 8999999999999988765
Q ss_pred cHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHH
Q 036198 154 PVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221 (499)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~ 221 (499)
+.+...+..+...+...|++++|...+++..+..+.+.. +..+ |...
T Consensus 80 --------------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 80 --------------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred --------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 345677888999999999999999999999876555655 5555 7777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH------HHHHHHHHHHHH-----cCCH--
Q 036198 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA------KTYAIMIVALVQ-----NDRM-- 288 (499)
Q Consensus 222 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~------~~~~~ll~~~~~-----~~~~-- 288 (499)
+++..+.... +...+..+..++...|..+.|++.++..... |+. .....+++.... .+++
T Consensus 139 l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 139 MTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLT------PAEKRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 7777775443 5556666777777888888888888755431 221 112222222221 1223
Q ss_pred -HHHHHHHHHHHHc-CCCcCHH-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHH
Q 036198 289 -EECFSLLGHMINS-GCLPDVS-TYK----EVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 289 -~~a~~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~ 360 (499)
++|++.++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+. ....+..+|...|++++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHH
Confidence 6788888888754 2223221 111 1134556779999999999999887632 332 22225678999999999
Q ss_pred HHHHHHHHHHCCCCc---ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC-----------CCCC---HHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWP---SVQTYNMLISMYFELGEPDGAFETWHEMDKRG-----------CAQD---VDTYCVMIDGLF 423 (499)
Q Consensus 361 a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~ 423 (499)
|...|+++.+..... .......+..++...|++++|.+.++.+.+.. -.|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999987653211 13456677778899999999999999988752 1133 234566777888
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
..|+.++|.++++++.... +-+...+..+...+...|+.++|++.+++..+..|....
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 9999999999999998875 346788889999999999999999999999998877644
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=1.9e-11 Score=125.67 Aligned_cols=379 Identities=8% Similarity=-0.009 Sum_probs=240.4
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh----
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK---- 168 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~---- 168 (499)
+....|+..++... .+. .......-.+...+. ..|++++|.++|+++.+.. +.+...+..+...+.+.
T Consensus 82 G~~~~A~~~~eka~-~p~-n~~~~~llalA~ly~----~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 82 GRDQEVIDVYERYQ-SSM-NISSRGLASAARAYR----NEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGG 153 (822)
T ss_pred CCcHHHHHHHHHhc-cCC-CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHH
Confidence 33445666666553 111 111222222233455 5677777777777777766 33333333333322222
Q ss_pred -------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------HHHHHHHHHHcC--C
Q 036198 169 -------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------GMQTLEEMIQMG--H 230 (499)
Q Consensus 169 -------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l---------a~~~~~~m~~~g--~ 230 (499)
......|+...+..++..+...++..+|++.++++.+..|.+...+..+ +...++.+.+.- +
T Consensus 154 eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f 233 (822)
T PRK14574 154 VVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV 233 (822)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc
Confidence 1122345544454444444445555557777777776544444443322 111112222110 1
Q ss_pred CCCHHH------HHHHHHHH-----HhcCC---HhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 036198 231 APDNFT------YNTAIDTF-----CKARM---VTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECF 292 (499)
Q Consensus 231 ~p~~~~------~~~li~~~-----~~~g~---~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~ 292 (499)
.+...- ....++.- ....+ .+.|+.-++.+...-.. .++.. .+..-.+.++...+++.++.
T Consensus 234 ~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~-~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 234 SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK-DPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC-CCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111100 01111110 01112 34456666666553211 12222 22334566788899999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-----YPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 293 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
+.|+.|...+.+....+-..+.++|...+++++|..+++.+.... ..++......|.-++...+++++|..+++.
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999877777889999999999999999999999986653 223444467899999999999999999999
Q ss_pred HHHCCC-----------CcC--h-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 036198 368 MIEVGC-----------WPS--V-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433 (499)
Q Consensus 368 m~~~~~-----------~~~--~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 433 (499)
+.+... .|+ - ..+..++..+...|++.+|++.++.+... -+-|......+...+...|.+.+|.+
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 987321 122 1 23455677788999999999999999776 34488888999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 434 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
.++...... +-+..+......++...|++++|..+.+.+.+.+|....
T Consensus 472 ~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 472 ELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 998877664 335677778889999999999999999999998888764
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=7.6e-11 Score=123.82 Aligned_cols=239 Identities=11% Similarity=-0.021 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 55444444555667899999999999998654 3445556777888899999999999999998874 33333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+.......|++++|...+++..+.. |+...|..+..++.+.|++++|...+++..+.. +.+...++.+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 44445556799999999999998764 578889999999999999999999999999864 234567788888999999
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 471 (499)
+.++|...++...+.. +-+...+..+..++...|++++|...+++..+.... +..+.-.......+..+++.+.+-++
T Consensus 658 ~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 658 DIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 236678889999999999999999999999877532 33455566667777888888888888
Q ss_pred HHHhhcChhH
Q 036198 472 HMRKFYNPVI 481 (499)
Q Consensus 472 ~m~~~~~~~~ 481 (499)
+.....+..+
T Consensus 736 r~~~~~~~~~ 745 (987)
T PRK09782 736 RRWTFSFDSS 745 (987)
T ss_pred HHhhcCccch
Confidence 8877666544
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=4.7e-11 Score=115.10 Aligned_cols=283 Identities=8% Similarity=0.030 Sum_probs=215.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEIN-ALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 132 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
.|+++.|.+.+....+.. ++.. .|-....+..+.|+++.|.+.|.++.+
T Consensus 97 eGd~~~A~k~l~~~~~~~-------------------------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----- 146 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-------------------------EQPVVNYLLAAEAAQQRGDEARANQHLERAAE----- 146 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-------------------------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----
Confidence 588998887777654432 2222 343445555889999999999998865
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYN--TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 288 (499)
..|+..... .....+...|+++.|.+.++++.+.. +-+......+...|.+.|++
T Consensus 147 -------------------~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~----P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 147 -------------------LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA----PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred -------------------cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHhH
Confidence 234443332 33678889999999999999999876 44678889999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 036198 289 EECFSLLGHMINSGCLPDV-------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361 (499)
Q Consensus 289 ~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 361 (499)
++|..++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999988654332 13334444444555667777777776443 244778888999999999999999
Q ss_pred HHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 362 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.+++++..+. .|+... .++.+.+..++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+.+.+.
T Consensus 283 ~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999998874 345422 23445556699999999999988762 235566778889999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 442 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
.|+..++..+..++.+.|+.++|.+++++-..
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 48999999999999999999999999987644
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=4e-10 Score=116.09 Aligned_cols=173 Identities=10% Similarity=-0.009 Sum_probs=139.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcChhhHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-----CWPSVQTYNMLISMY 387 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~ 387 (499)
.+-++...|+..++.+.++.+...+.+.-..+-..+.++|...+++++|..+|+.+.... ..++......|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 456778889999999999999988866556688899999999999999999999987643 123344467899999
Q ss_pred HhcCCchHHHHHHHHHhHCCC-----------CCCH--H-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036198 388 FELGEPDGAFETWHEMDKRGC-----------AQDV--D-TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453 (499)
Q Consensus 388 ~~~~~~~~a~~~~~~m~~~~~-----------~p~~--~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 453 (499)
...+++++|..+++.+.+... .||. . .+..++..+.-.|+..+|.+.++++.... +-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987311 1222 2 34456777888999999999999998776 4588899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 454 LMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
.+.+...|.+.+|++.++......|....-+++
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 999999999999999998888776665554443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=3.9e-11 Score=116.33 Aligned_cols=300 Identities=10% Similarity=-0.012 Sum_probs=216.6
Q ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHhCCChHH
Q 036198 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-INALNLLLDALCKCGLVDY 195 (499)
Q Consensus 117 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 195 (499)
.+..+..++... ..|+++.|.+.+.+..+.. |+ ...+-....++...|+.+.
T Consensus 84 ~~~~~~~glla~--~~g~~~~A~~~l~~~~~~~-------------------------~~~~~~~llaA~aa~~~g~~~~ 136 (409)
T TIGR00540 84 AQKQTEEALLKL--AEGDYAKAEKLIAKNADHA-------------------------AEPVLNLIKAAEAAQQRGDEAR 136 (409)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHhhcC-------------------------CCCHHHHHHHHHHHHHCCCHHH
Confidence 345555555422 5799999999998766543 44 3345556677888999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH
Q 036198 196 AETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN--FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273 (499)
Q Consensus 196 A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~ 273 (499)
|.+.+.+..+. .|+. ...-.....+...|+++.|.+.++.+.+.. +-+..
T Consensus 137 A~~~l~~a~~~------------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~----P~~~~ 188 (409)
T TIGR00540 137 ANQHLEEAAEL------------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA----PRHKE 188 (409)
T ss_pred HHHHHHHHHHh------------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHH
Confidence 99999887542 2333 233445788889999999999999999986 34667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCC---CCCHhhHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM---CLAGKVEEAYKFLEEMGNKGY---PPDIVTYNC 347 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~ 347 (499)
+...+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+++.+.+..+.+... +.+...+..
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~ 268 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA 268 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH
Confidence 88999999999999999999999999987543332212222222 333333333445555544321 137788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh---HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH---HHHHHHHHH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT---YNMLISMYFELGEPDGAFETWHEMDKRGCAQDV---DTYCVMIDG 421 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~ 421 (499)
+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+. .|+. .....+...
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHH
Confidence 9999999999999999999999854 44432 122222233457788888888877765 3433 456688899
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999655545568999999999999999999999999997544
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=4.2e-14 Score=130.14 Aligned_cols=261 Identities=20% Similarity=0.212 Sum_probs=113.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCC-CCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~-~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
.+...+.+.|++++|+++++...... +| .|...|..+...+...++++.|.+.++++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~----------------------~~~~~~~~~a~La~~~~~~~~A~~ay~~l 70 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPP----------------------DDPEYWRLLADLAWSLGDYDEAIEAYEKL 70 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc----------------------ccccccccccccccccccccccccccccc
Confidence 55778889999999999996543321 11 14455666677777889999999999999
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 036198 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YP 339 (499)
Q Consensus 261 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~ 339 (499)
...+ +-+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+
T Consensus 71 ~~~~----~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 71 LASD----KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccc----ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 9876 2356667777777 7999999999999887665 3567778889999999999999999999977543 34
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHH
Q 036198 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418 (499)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (499)
.+...|..+...+.+.|+.++|.+.+++..+.. | |....+.++..+...|+.+++.++++...+.. +.|...+..+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l 220 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDAL 220 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 577888889999999999999999999999864 5 47788899999999999999999998887653 3455677889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
..+|...|+.++|..++++..+.. +.|+.....+..++...|+.++|.++..+..+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 999999999999999999998865 34888899999999999999999999887654
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.2e-10 Score=101.53 Aligned_cols=304 Identities=14% Similarity=0.133 Sum_probs=228.8
Q ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHH
Q 036198 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195 (499)
Q Consensus 116 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (499)
..|-.=++.+. .++.++|..+|-+|.+.. +-+..+.-+|.+.|-+.|..|.
T Consensus 37 r~Yv~GlNfLL-----s~Q~dKAvdlF~e~l~~d------------------------~~t~e~~ltLGnLfRsRGEvDR 87 (389)
T COG2956 37 RDYVKGLNFLL-----SNQPDKAVDLFLEMLQED------------------------PETFEAHLTLGNLFRSRGEVDR 87 (389)
T ss_pred HHHHhHHHHHh-----hcCcchHHHHHHHHHhcC------------------------chhhHHHHHHHHHHHhcchHHH
Confidence 44666666665 578899999999998865 2355678899999999999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHH
Q 036198 196 AETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275 (499)
Q Consensus 196 A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~ 275 (499)
|+.+...+.++ ||.. ++ --......|..-|..+|-+|.|+++|..+.+.+ ..-..+.
T Consensus 88 AIRiHQ~L~~s--pdlT-~~----------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~----efa~~Al 144 (389)
T COG2956 88 AIRIHQTLLES--PDLT-FE----------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG----EFAEGAL 144 (389)
T ss_pred HHHHHHHHhcC--CCCc-hH----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch----hhhHHHH
Confidence 99999888763 1110 00 012234566777889999999999999998876 3446678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDV----STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
..|+..|-...+|++|.++-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+..+.+.+ ++..--.+...
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v 223 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHH
Confidence 89999999999999999999999987644433 23555666667788999999999998887543 34444456678
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
....|+++.|.+.++...+.+..--..+...|..+|...|+.++...++..+.+.. ++...-..+-.......-.+.|
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHH
Confidence 88999999999999999998755556788999999999999999999999988763 3444445555555555566777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 036198 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVI---GDLGAIHKLSDHMRKF 476 (499)
Q Consensus 432 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~ 476 (499)
...+.+-+.. +|+...+..++..-... |...+....+.+|...
T Consensus 302 q~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 302 QAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 7777666655 48999999999876543 4566666666666643
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=8.7e-10 Score=106.34 Aligned_cols=290 Identities=10% Similarity=0.022 Sum_probs=216.9
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL-SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ 164 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 164 (499)
.++.-...+++.|.+........ .+++..+-.+..-. . +.|+++.|...+.++.+..
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~----~~g~~~~A~~~l~~A~~~~--------------- 148 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQ----QRGDEARANQHLERAAELA--------------- 148 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC---------------
Confidence 34444456677777666643322 22344443333333 4 8999999999999998754
Q ss_pred HHHhhhcCCCCCHHHHH--HHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036198 165 YTEKIKVKTQPEINALN--LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242 (499)
Q Consensus 165 ~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~ 242 (499)
|+...+. .....+...|+++.|...++++.+. -+-+......+..
T Consensus 149 ----------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----------------------~P~~~~al~ll~~ 195 (398)
T PRK10747 149 ----------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----------------------APRHPEVLRLAEQ 195 (398)
T ss_pred ----------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------------CCCCHHHHHHHHH
Confidence 5543332 4467889999999999999988753 1226678888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTA------KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
.|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+...++++.+.+. .+.++.....+..+
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~ 272 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHV--GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHH
Confidence 99999999999999999999873 11221 23444455555566677777888777543 35578888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
+...|+.++|.+++++..+. .|+.. -.++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998875 34442 223445556699999999999988754 24556788999999999999999
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 348 ~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999885 69999999999999999999999999998754
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=4.5e-11 Score=113.97 Aligned_cols=271 Identities=11% Similarity=-0.011 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+..+..-+..+|...+++++|+++|+.+.+..+- ..-+.+.|.+.+--+-+ +-++.
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------RVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------------cccchhHHHHHHHHHHh----hHHHH
Confidence 3457788899999999999999999999763110 01133444444333321 11111
Q ss_pred HH-HHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 256 LF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 256 ~~-~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
.+ +.+.+.. +-...+|.++..+|.-.++.+.|++.|++..+.. +-...+|+.+-+-+.....+|.|...|+...
T Consensus 408 ~Laq~Li~~~----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 408 YLAQDLIDTD----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHhhC----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 11 1122221 2234455555555555555555555555554432 1144555555555555555555555555444
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
..... +-.+|--+...|.++++++.|+-.|+...+.+. -+.+....+...+-+.|+.|+|++++++......+ |+.+
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 32111 112222234445555555555555555554331 23334444444455555555555555554433211 2222
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
--..+..+...++.++|+..++++++.- +-+...+..+...|.+.|+.+.|..-|.-+.+..|+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 2233333444455555555555554432 123334444445555555555555555555554444
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=3.5e-09 Score=95.42 Aligned_cols=287 Identities=12% Similarity=0.062 Sum_probs=226.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
-.|+|.+|+.+..+-.+.+ +.....|..-.++....|+.+.|-..+.+..+.
T Consensus 96 ~eG~~~qAEkl~~rnae~~------------------------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---- 147 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG------------------------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---- 147 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC------------------------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc----
Confidence 4699999999998876665 234557777888888999999999998887651
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
--.++....-+..+.....|+++.|..-.+++.+.+ +-.........++|.+.|++..
T Consensus 148 ------------------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 148 ------------------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT----PRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred ------------------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC----cCChHHHHHHHHHHHHhccHHH
Confidence 112355566677788899999999999999999886 4567889999999999999999
Q ss_pred HHHHHHHHHHcCCCcCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 036198 291 CFSLLGHMINSGCLPDV-------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363 (499)
Q Consensus 291 a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 363 (499)
...++..|.+.|.-.+. .+|..+++-....+..+.-...++...+. .+.++..-.+++.-+.+.|+.++|.+
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 99999999999876654 45677777777777777766677666443 34466677788888999999999999
Q ss_pred HHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 364 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
+.++..+.+..|+ -...-.+.+-++.+.-.+..+.-.+. +. ++..+..|-..|.+.+.+.+|.+.|+...+.
T Consensus 285 ~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~- 357 (400)
T COG3071 285 IIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKL- 357 (400)
T ss_pred HHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-
Confidence 9999998876665 22233456677777777777665443 33 4467889999999999999999999977766
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 443 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.|+..+|+-+..++.+.|+..+|.+..++-.-.
T Consensus 358 -~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 -RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 489999999999999999999999998876643
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=9.7e-13 Score=121.09 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=110.5
Q ss_pred HHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 036198 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199 (499)
Q Consensus 120 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 199 (499)
.+-..+. +.|++++|.++++.-..... .+.|...|..+...+...|+++.|.+.
T Consensus 13 ~~A~~~~----~~~~~~~Al~~L~~~~~~~~----------------------~~~~~~~~~~~a~La~~~~~~~~A~~a 66 (280)
T PF13429_consen 13 RLARLLY----QRGDYEKALEVLKKAAQKIA----------------------PPDDPEYWRLLADLAWSLGDYDEAIEA 66 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc----cccccccccccccccccccc----------------------ccccccccccccccccccccccccccc
Confidence 3355555 89999999999965433320 013445666677777788999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 036198 200 CKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279 (499)
Q Consensus 200 ~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll 279 (499)
++++... +.. +...+..++.. ...+++++|.++++...+.. ++...+..++
T Consensus 67 y~~l~~~----------------------~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-----~~~~~l~~~l 117 (280)
T PF13429_consen 67 YEKLLAS----------------------DKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD-----GDPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc----------------------ccc-ccccccccccc-cccccccccccccccccccc-----cccchhhHHH
Confidence 9988652 111 44456666666 68899999999998776543 4566778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 036198 280 VALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 358 (499)
..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+.... |......++..+...|+.
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDY 196 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCh
Confidence 89999999999999999987542 3457778888888999999999999999999887432 577888899999999999
Q ss_pred HHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 359 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
+++..+++...+.. ..|...+..+..+|...|+.++|...+++..+.. +.|......+..++...|+.++|.++..+.
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999988887754 4566777889999999999999999999987742 337777888899999999999999988776
Q ss_pred HH
Q 036198 439 VN 440 (499)
Q Consensus 439 ~~ 440 (499)
..
T Consensus 275 ~~ 276 (280)
T PF13429_consen 275 LR 276 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.4e-08 Score=93.09 Aligned_cols=303 Identities=13% Similarity=0.043 Sum_probs=206.0
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------------------------
Q 036198 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------------------------ 217 (499)
Q Consensus 168 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------------------------ 217 (499)
....+...|...+-...-.+-+.|..+.|+..|.......|-.-..|-.|
T Consensus 155 ~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 155 SKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred HHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHH
Confidence 34455556655555555666778999999998888776555555555444
Q ss_pred -----------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH--------
Q 036198 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM-------- 278 (499)
Q Consensus 218 -----------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l-------- 278 (499)
+.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+.++- ---|..+|..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY-Rl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY-RLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cchhHHHHhHHHHHHhhhH
Confidence 3333444445566655555555556666778899999999999887521 11134444333
Q ss_pred -----------------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 279 -----------------------IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 279 -----------------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.+-|+-.++.++|...|++..+.+ +-....|+.+.+-|........|.+-++...+
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 334455566778888888887765 34556777777888888888888888888777
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH
Q 036198 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 415 (499)
-+. .|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......|- .+...+
T Consensus 393 i~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l 469 (559)
T KOG1155|consen 393 INP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSAL 469 (559)
T ss_pred cCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHH
Confidence 643 377788888888888888888888888877753 24677888888888888888888888888776642 255778
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 416 CVMIDGLFDCSKVEEACFLLEEVVN----KGLKLPYRKF---DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+...|-+.++..+|.+.+.+-++ .|.. +..|. .-|..-+.+.+++++|..+.......
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 8888888888888888777766543 2332 22222 22345567778888777766666554
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.7e-09 Score=96.14 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=199.3
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC---CChhhHHHH--------HHHHHHHHHHcCCCCCHHHH
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNIL--------GMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l--------a~~~~~~m~~~g~~p~~~~~ 237 (499)
...|++-+...-+-...+.-...+++.|+.+|+++....| .|..+|.-+ .+.++.+-.-.-.+--+.|.
T Consensus 254 ~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETC 333 (559)
T KOG1155|consen 254 SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETC 333 (559)
T ss_pred HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccce
Confidence 3345555555445555555677899999999999987522 244555433 22222222222122345677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
.++.+-|+-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-|+...+-+ +.|-..|-.|..+|
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 788888999999999999999999976 4467899999999999999999999999999875 66888999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
.-.+.+.=|+-.|++...-. +.|...|.+|..+|.+.++.++|.+.|......|- .+...+..|.+.|-+.++..+|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999988764 34899999999999999999999999999998763 36688999999999999999999
Q ss_pred HHHHHHhHC----CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 398 ETWHEMDKR----GC-AQD-VDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 398 ~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
..|..-.+. |. .|. ..+---|..-+.+.+++++|........
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 998876552 32 221 1222234455667788887776655443
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=6.9e-09 Score=90.81 Aligned_cols=311 Identities=14% Similarity=0.118 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHH
Q 036198 78 PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157 (499)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 157 (499)
.++.+-+..+=--+.+.+++|...|-.+.+.+. -+..+--+|-+.|- +.|..+.|+.+-+...++.. .+.+
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfR----sRGEvDRAIRiHQ~L~~spd--lT~~- 104 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFR----SRGEVDRAIRIHQTLLESPD--LTFE- 104 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCC--CchH-
Confidence 355555544444467788899999988865321 13334445566676 89999999999998876541 1111
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 036198 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~ 237 (499)
--..+...|..-|...|-+|.|+.+|..+.+. ..--....
T Consensus 105 -----------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-----------------------~efa~~Al 144 (389)
T COG2956 105 -----------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-----------------------GEFAEGAL 144 (389)
T ss_pred -----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-----------------------hhhhHHHH
Confidence 11234556778899999999999999998752 01134466
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
..|+..|-...+|++|+++-+++.+.+....... ...|.-+...+....+.+.|..++.+..+.+ +-....--.+-+.
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v 223 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHH
Confidence 7899999999999999999999998874211111 2345666667777889999999999998774 2233334446678
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.. +....-..+-..-......+.|
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHH
Confidence 89999999999999999998766667788999999999999999999999998864 3444444444444555666777
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCC
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLF---DCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~ 442 (499)
...+.+-... +|+...+..+|..-. ..|+..+-..++++|....
T Consensus 302 q~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 302 QAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 7776665554 699999999998754 3456777788888887543
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.1e-09 Score=106.86 Aligned_cols=404 Identities=13% Similarity=0.054 Sum_probs=210.5
Q ss_pred HHHHHHHhccCCCchHHHHHhhC----CCC-----CCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 036198 53 KLYEAIIDNSNAYDNMEKALDSL----GVP-----LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMID 123 (499)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~al~~~----~~~-----~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~ 123 (499)
..|..+.+++-..|++++|..-+ ... ++.--+-++.- ..++-+.+...|+.+.++. +-+..+...+..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQL--PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhC--cchHHHHHHHHh
Confidence 44677777777777777775422 111 11111111111 1222334555555443321 114455555555
Q ss_pred HHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH------------h----hhcCCCCCHHHHHHHHHHH
Q 036198 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE------------K----IKVKTQPEINALNLLLDAL 187 (499)
Q Consensus 124 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~------------~----~~~~~~~~~~~~~~li~~~ 187 (499)
.|+.........+.|..++....+.. +.+...+..+-..+.. . ...+.++.+...|.+....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 55521112235566777766666554 3444333332222211 1 3344557778888888888
Q ss_pred HhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 036198 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267 (499)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (499)
...|++++|...|+.......|... .+.|-.++..+--.+..++-..++.+.|.+.|..+.+..
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n-------------~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--- 526 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVAN-------------KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--- 526 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcC-------------ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---
Confidence 8899999999988887654111000 011111222223334445555566666777776666653
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhH
Q 036198 268 SSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTY 345 (499)
Q Consensus 268 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~ 345 (499)
|+ +..|--++......+...+|...+.+..... ..++..++.+-..+.+..++..|.+-|....+. ...+|+.+.
T Consensus 527 --p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 527 --PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred --chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 22 2233333322223345566666666665442 334444554555666666666666644444332 112354444
Q ss_pred HHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH
Q 036198 346 NCFLKVLCD------------NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413 (499)
Q Consensus 346 ~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 413 (499)
-+|.+.|.+ .+..++|+++|.+..+.. +.|...-|.+.-.++..|++.+|.++|...++... -...
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc
Confidence 444444422 223455666666666543 23455556666666666777777777776666532 1334
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNK-GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+|-.+.++|+..|++..|.++|+...+. +..-+....+.|.+++.+.|.+.+|.+.+.......+..+.
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 5666666666667777777766654433 33345556666667777777777766666666665555444
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.39 E-value=5.6e-09 Score=103.13 Aligned_cols=314 Identities=11% Similarity=0.033 Sum_probs=220.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
-.|++++|.+++.+..+.. +.....|.+|...|-..|+.+++...+-..-.-.+.|
T Consensus 151 arg~~eeA~~i~~EvIkqd------------------------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d 206 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD------------------------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD 206 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC------------------------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 4599999999999999886 2355567777777777777777766655554444445
Q ss_pred hhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHH---
Q 036198 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY--- 275 (499)
Q Consensus 211 ~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~--- 275 (499)
..-|..+ |.-.+.+.++... ++...+-.-+..|-+.|+...|.+-|.++.... .+.|..-+
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~ 282 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDL 282 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHH
Confidence 5555555 4445555555433 355555666788889999999999999998875 22232222
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------------
Q 036198 276 -AIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----------------- 336 (499)
Q Consensus 276 -~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----------------- 336 (499)
-.+++.+...++-+.|.+.++.... .+-..+...++++...+.+..+++.|......+...
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 2344556667777888888887765 233456677888888899999999988887777652
Q ss_pred ----------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 337 ----------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 337 ----------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
+..++..++ -+.-++......+....+...+.+.. +.-+...|.-+..+|...|++.+|.+++..+.
T Consensus 363 ~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 122222231 12233344445555555555555555 33446688889999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
.....-+...|-.+.++|...|..++|.+.++..+.... .+...--+|-..+.+.|+.++|.+.+..|.
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 875555678899999999999999999999999887652 345556677778889999999999998876
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=8.6e-09 Score=100.04 Aligned_cols=297 Identities=10% Similarity=0.016 Sum_probs=208.4
Q ss_pred HHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHH-HHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHH
Q 036198 83 SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM-IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161 (499)
Q Consensus 83 ~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 161 (499)
+...++.-...++..|.+......+ ..|++..+-.+ ..+.. +.|+++.|.+.+.+..+..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~----~~g~~~~A~~~l~~a~~~~------------ 148 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQ----QRGDEARANQHLEEAAELA------------ 148 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC------------
Confidence 3445555567777788888765533 34554444333 45555 7899999999999987654
Q ss_pred HHHHHHhhhcCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036198 162 LKQYTEKIKVKTQPEI--NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239 (499)
Q Consensus 162 l~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~ 239 (499)
|+. ...-+....+...|+++.|.+.++.+.+. -+-+...+..
T Consensus 149 -------------p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----------------------~P~~~~~l~l 192 (409)
T TIGR00540 149 -------------GNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----------------------APRHKEVLKL 192 (409)
T ss_pred -------------CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHH
Confidence 333 34444578888999999999999988763 1226678889
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHHcC---CCcCHHhHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA-IMIVAL---VQNDRMEECFSLLGHMINSG---CLPDVSTYKE 312 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~---~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ 312 (499)
+...+...|++++|.+++..+.+.+. ++...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~----~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~ 268 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGL----FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA 268 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH
Confidence 99999999999999999999999862 2333331 111111 22333333334444444432 1237888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh---hhHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY-NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV---QTYNMLISMYF 388 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~ 388 (499)
+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.. |+. ....++...|.
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHH
Confidence 999999999999999999999886433221111 122222334578888999998877643 443 45568889999
Q ss_pred hcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999654444579999999999999999999999999998643
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.1e-09 Score=97.88 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4455555666666666666666666665442 23345555566666666666666666666655432 234455566666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
+...|++++|.+.+++....... .....+..+..++...|++++|.+.+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66677777777777766653211 223455556667777777777777777776542 2234566677777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 431 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88888877766 23455666666777777888888888777776543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.9e-10 Score=108.56 Aligned_cols=247 Identities=11% Similarity=0.050 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+..+...+.++|...+++++|+++|+.+.+...- ..-+.++|.+.+-.+-+.=. --.+-+++.+.. +-.+.+|.+
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-rv~~meiyST~LWHLq~~v~---Ls~Laq~Li~~~-~~sPesWca 426 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-RVKGMEIYSTTLWHLQDEVA---LSYLAQDLIDTD-PNSPESWCA 426 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHhhHH---HHHHHHHHHhhC-CCCcHHHHH
Confidence 4466778889999999999999999999886532 23467888888776543211 112223333332 456889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh---hHHHHHHHHHh
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ---TYNMLISMYFE 389 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~ 389 (499)
+.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+....++|.|...|+.... .|.. .|-.|.-.|.+
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheec
Confidence 999999999999999999999886432 678999999999999999999999999875 3444 45556778999
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
.++++.|+-.|+...+-+. -+.+....+...+-+.|+.++|+++++++.....+ |+..--.-...+...+++++|...
T Consensus 502 qek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred cchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHH
Confidence 9999999999999987532 25566677777888999999999999999988755 555555566778889999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHhhh
Q 036198 470 SDHMRKFYNPVIARRLALNQKRV 492 (499)
Q Consensus 470 ~~~m~~~~~~~~~~~~~~~~~~~ 492 (499)
++++++.-+.... .+.+..+.+
T Consensus 580 LEeLk~~vP~es~-v~~llgki~ 601 (638)
T KOG1126|consen 580 LEELKELVPQESS-VFALLGKIY 601 (638)
T ss_pred HHHHHHhCcchHH-HHHHHHHHH
Confidence 9999998666544 444444433
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.35 E-value=4.1e-08 Score=97.23 Aligned_cols=351 Identities=16% Similarity=0.139 Sum_probs=251.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhc
Q 036198 92 QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171 (499)
Q Consensus 92 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (499)
+++...|.+++..+.++.. -....|..|...|- ..|+.+++...+--.-..+
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyE----qrGd~eK~l~~~llAAHL~---------------------- 203 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYE----QRGDIEKALNFWLLAAHLN---------------------- 203 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHH----HcccHHHHHHHHHHHHhcC----------------------
Confidence 4666778888888766544 36788999999998 8899998887765554443
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhh-HHH--H---------HHHHHHHHHHcCCCCCHHHH--
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT-YNI--L---------GMQTLEEMIQMGHAPDNFTY-- 237 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~-~~~--l---------a~~~~~~m~~~g~~p~~~~~-- 237 (499)
+-|...|-.+-....+.|+++.|.-.|.+..+..+++... |.- | |.+.|.++.....+.|..-+
T Consensus 204 --p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 204 --PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred --CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 2355677777777777777777777777776654444221 111 1 66666666665443343333
Q ss_pred --HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------
Q 036198 238 --NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL----------- 304 (499)
Q Consensus 238 --~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----------- 304 (499)
-.+++.+...++-+.|.+.++.....+. ...+...++.+...+.+...++.+.....++......
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 3445667778888999999998887443 3567778899999999999999999998888762222
Q ss_pred ----------------cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 036198 305 ----------------PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG--YPPDIVTYNCFLKVLCDNKNGDEALRLYG 366 (499)
Q Consensus 305 ----------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 366 (499)
++..++ -++-++.+....+....+.......+ +.-+...|.-+..+|...|++++|..+|.
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred ccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 222221 12233444555555555555555555 33355678889999999999999999999
Q ss_pred HHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH------
Q 036198 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVV------ 439 (499)
Q Consensus 367 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~------ 439 (499)
.+......-+...|--+..+|...|.++.|.+.+...... .| +...--.|-..+-+.|+.++|.+.+..+.
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9998755566789999999999999999999999999875 33 34445566677889999999999999854
Q ss_pred --HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 440 --NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 440 --~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
..+..|...........+...|+.++-..+...|...+
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33466777777788888999999998777777776643
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=3.4e-09 Score=96.59 Aligned_cols=348 Identities=13% Similarity=0.106 Sum_probs=171.2
Q ss_pred HHHHHHHHHhhcC-CCCCCC--HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 96 KIAFRFFMWAGHQ-DNYAHE--PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 96 ~~a~~~f~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
.+|++|++....+ +.+..+ ....+.+-..+. +.|+++.|..-|+++.+..
T Consensus 254 skaikfyrmaldqvpsink~~rikil~nigvtfi----q~gqy~dainsfdh~m~~~----------------------- 306 (840)
T KOG2003|consen 254 SKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI----QAGQYDDAINSFDHCMEEA----------------------- 306 (840)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE----ecccchhhHhhHHHHHHhC-----------------------
Confidence 4677777765433 122111 233444444455 7888888888888877665
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-------------CCCChhhHHHH-HHHHHHHHHHc----------
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-------------VKPNANTYNIL-GMQTLEEMIQM---------- 228 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------~~p~~~~~~~l-a~~~~~~m~~~---------- 228 (499)
|+..+--.|+-++..-|+.++..+.|.+|..- -.|+....+.- --+.+..|.+.
T Consensus 307 --pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ 384 (840)
T KOG2003|consen 307 --PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAII 384 (840)
T ss_pred --ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 77665445555555678899999999988541 12222222221 11222222211
Q ss_pred --------CCCCCHHH-------------HH--------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHH-HH
Q 036198 229 --------GHAPDNFT-------------YN--------TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA-IM 278 (499)
Q Consensus 229 --------g~~p~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~-~l 278 (499)
-+.||... +. .-..-|.+.|+++.|+++++-+.+++.. ..+...-| .+
T Consensus 385 ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk--~~saaa~nl~~ 462 (840)
T KOG2003|consen 385 TAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK--TASAAANNLCA 462 (840)
T ss_pred HHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch--hhHHHhhhhHH
Confidence 12222110 00 1122367889999999999888776532 11111111 11
Q ss_pred HHHH----------------------------------HHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH
Q 036198 279 IVAL----------------------------------VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 279 l~~~----------------------------------~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 324 (499)
+..+ ..+|++++|...|.+.....-.-....||+= -.+-..|+++
T Consensus 463 l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ld 541 (840)
T KOG2003|consen 463 LRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLD 541 (840)
T ss_pred HHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHH
Confidence 1111 1135666666666666654322222333322 2244556666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
+|++.|-.+... ...+..+..-+.+.|-...+...|.+++-+.... ++.|....+-|...|-+.|+-..|.+.+-+--
T Consensus 542 eald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 666666554321 1113344444444555555555555555443321 22344455555555555555555554433322
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcChh
Q 036198 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.. ++-|..+..-|...|....-++++..+|++.. -+.|+..-|..++..| .+.|++.+|.++++.+.+.||..
T Consensus 620 ry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 620 RY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred cc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 11 22244444444444445555555555555432 1345555555555433 34566666666666555555543
No 45
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.4e-12 Score=82.27 Aligned_cols=47 Identities=38% Similarity=0.619 Sum_probs=19.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 387 (499)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.7e-09 Score=95.29 Aligned_cols=202 Identities=10% Similarity=0.023 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 45678888999999999999999999998764 3457788889999999999999999999998764 445677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
+...+...|++++|.+.++........ .....+..+...+...|++++|...+.+..+... .+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcC
Confidence 889999999999999999998875322 2345677788889999999999999999887542 34567888999999999
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998876 3446677778888888999999999998887654
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.32 E-value=5.7e-08 Score=96.95 Aligned_cols=357 Identities=14% Similarity=0.104 Sum_probs=249.2
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|..-|+...++.+ +|. ...+..++.. +..+++..|+.+|......+. ..+|
T Consensus 147 ~~A~a~F~~Vl~~sp--~Ni--l~LlGkA~i~--ynkkdY~~al~yyk~al~inp---------------------~~~a 199 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSP--DNI--LALLGKARIA--YNKKDYRGALKYYKKALRINP---------------------ACKA 199 (1018)
T ss_pred HHHHHHHHHHHhhCC--cch--HHHHHHHHHH--hccccHHHHHHHHHHHHhcCc---------------------ccCC
Confidence 456666666654422 122 2233333321 156788888888888666553 2344
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTYNTA 240 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~~~l 240 (499)
|+.+ .+..++.+.|+.+.|+..|.+..+--|.++.++-.| +...+........ -++...+.|
T Consensus 200 D~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~L 276 (1018)
T KOG2002|consen 200 DVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHL 276 (1018)
T ss_pred Cccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHH
Confidence 4322 222567789999999999999887655555555555 4444444433322 267778889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH--hHHHHHHHHH
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS--TYKEVLEGMC 318 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~ 318 (499)
.+-|.-.|+++.++.+...+...... -..-...|--+.++|-..|++++|...|.+..+.. ++.. .+--+...+.
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~-~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTEN-KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHH
Confidence 99999999999999999988775421 11224568889999999999999999998887663 4443 3455788999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK----NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
+.|+++.+...|+.+.+.. +-+..+..++...|...+ ..+.|..++....+.- .-|...|-.+...+.. ++..
T Consensus 354 ~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~ 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPW 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChH
Confidence 9999999999999998874 336677777777777665 4566777777766643 3466677777766654 4444
Q ss_pred HHHHHHHHH----hHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcC
Q 036198 395 GAFETWHEM----DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLKLPY------RKFDSYLMQLSVIG 461 (499)
Q Consensus 395 ~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~g 461 (499)
.++.++... ...+..+.+...|.+.......|.+.+|...|+..... ...++. .+-..+.+.+-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 447666654 34566678888999999999999999999999988765 122232 23445556667788
Q ss_pred CHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 462 DLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 462 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
+.+.|.+.+..+.+.+|..+.-+..+.
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999888887774
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=9e-10 Score=108.15 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=143.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh--hhcCCCCCHHHHHHH
Q 036198 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK--IKVKTQPEINALNLL 183 (499)
Q Consensus 106 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l 183 (499)
.+..|+.|+.+||..+|.-|| ..|+.+.|- +|.-|.-+.. ++.-..+..++....+. ....-.|...+|..|
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc----~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYC----TKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHc----ccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 356789999999999999999 999999888 8888877664 44555555555543333 222337889999999
Q ss_pred HHHHHhCCChHH---HHHHHHHhhcC----------------------CCCChhhHHHH---------------------
Q 036198 184 LDALCKCGLVDY---AETICKRVKNK----------------------VKPNANTYNIL--------------------- 217 (499)
Q Consensus 184 i~~~~~~g~~~~---A~~~~~~m~~~----------------------~~p~~~~~~~l--------------------- 217 (499)
..+|...||+.. ..+.+..+... .-||..+-..+
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 33322222111 12222221111
Q ss_pred ------------------HHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 036198 218 ------------------GMQTLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278 (499)
Q Consensus 218 ------------------a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 278 (499)
..++++ |.+.+. .|+..+|..++.+-.-+|+++.|..++.+|.+.| .+.+.+-|-.+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g---fpir~HyFwpL 245 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG---FPIRAHYFWPL 245 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC---CCcccccchhh
Confidence 222222 223333 4899999999999999999999999999999999 56677766666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
+-+ .++...+..++.-|.+.|+.|+..|+..-+-.+..+|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 655 7888888889999999999999999877666655544
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8.4e-12 Score=80.95 Aligned_cols=49 Identities=31% Similarity=0.447 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=9.4e-11 Score=114.83 Aligned_cols=219 Identities=18% Similarity=0.258 Sum_probs=144.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 220 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
.++-.+...|+.|+..||..+|.-||..|+++.|- +|.-|.-+. .+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks---Lpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS---LPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc---ccccchhHHHHHhcccccccccCCC-------
Confidence 35677888999999999999999999999999998 888887654 2333334444444444333333322
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCH--------------------------------------------------------
Q 036198 300 NSGCLPDVSTYKEVLEGMCLAGKV-------------------------------------------------------- 323 (499)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~g~~-------------------------------------------------------- 323 (499)
.|...||+.|+.+|...||.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 23334444444444444433
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNC---FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
+.+.+++..+... .-++. ++.-+.. .....+++........-.|+..+|.+++.+-...|+.+.|..++
T Consensus 156 aqllkll~~~Pvs------a~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVS------AWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHhhCCcc------cccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 3333333222111 11111 1111111 11122233322222111489999999999999999999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 464 (499)
.+|++.|++.+..-|..++-+ .++..-+..+++-|.+.|+.|+..|+...+..+.++|...
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 999999999999888888877 8888899999999999999999999999998888855533
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.4e-08 Score=102.40 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHH--
Q 036198 113 HEPLAYNLMIDILSS-TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP-EINALNLLLDALC-- 188 (499)
Q Consensus 113 ~~~~~~~~li~~~~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~li~~~~-- 188 (499)
.+...|...+++... .....+.+++|..+|++..+.. | +...|..+..++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------------------------P~~a~a~~~La~~~~~~ 308 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------------------------PNSIAPYCALAECYLSM 308 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------------------------CccHHHHHHHHHHHHHH
Confidence 355666666665421 0112456778888888877665 3 3345554444433
Q ss_pred -------hCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 036198 189 -------KCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 189 -------~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 261 (499)
..+++++|...+++..+. . +-+...+..+...+...|++++|...|++..
T Consensus 309 ~~~g~~~~~~~~~~A~~~~~~Al~l----------------------d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 365 (553)
T PRK12370 309 AQMGIFDKQNAMIKAKEHAIKATEL----------------------D-HNNPQALGLLGLINTIHSEYIVGSLLFKQAN 365 (553)
T ss_pred HHcCCcccchHHHHHHHHHHHHHhc----------------------C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 223466777777666541 1 1155666677777777888888888888877
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036198 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 262 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 340 (499)
+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...+++......+-
T Consensus 366 ~l~----P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~ 439 (553)
T PRK12370 366 LLS----PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD 439 (553)
T ss_pred HhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc
Confidence 765 3346667777777788888888888888877764 33 2233334445666777788888777766543222
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCCHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVM 418 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l 418 (499)
+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.+. ...+....+..+
T Consensus 440 ~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~ 515 (553)
T PRK12370 440 NPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL 515 (553)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH
Confidence 3445566666777778888888877776543 233 233344445556555 3666666665442 112222222222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.+.-.|+-+.+..+ +++.+.|
T Consensus 516 --~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 516 --VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHhhhHHHHHH-HHhhccc
Confidence 23334554444444 6655543
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.2e-07 Score=86.65 Aligned_cols=367 Identities=15% Similarity=0.099 Sum_probs=240.1
Q ss_pred CCHHHHHHHHHccC------CChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCC
Q 036198 79 LTTDSVVGVLQRFQ------FEEKIAFRFFMWAGHQDNYAHEP-LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151 (499)
Q Consensus 79 ~~~~~~~~~l~~~~------~~~~~a~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 151 (499)
+..+.-..++..++ ...+.|..-|+.++.. .|+. ..||..|.+++ -|+.++..+-|..|......
T Consensus 270 ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~-----i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 270 INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFA-----IGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhhee-----cCcHHHHHHHHHHHhcCCCC
Confidence 33445555665543 3345677778776543 2454 45777777777 67888899999998765432
Q ss_pred cc-----------cHHHHHH-----HHHHHHHh---------------hhcCCCCCHHH-------------H-------
Q 036198 152 FV-----------PVDVLLM-----ILKQYTEK---------------IKVKTQPEINA-------------L------- 180 (499)
Q Consensus 152 ~~-----------~~~~~~~-----~l~~~~~~---------------~~~~~~~~~~~-------------~------- 180 (499)
+. +...++. .++-+.+. ..--+.|+... |
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 11 1112222 22222222 11112222110 0
Q ss_pred -HHHHHHHHhCCChHHHHHHHHHhhcC-CCCChhhHHHH-HHHHHHHHH-------HcCCCCCHHHHHHH-----HHHHH
Q 036198 181 -NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-GMQTLEEMI-------QMGHAPDNFTYNTA-----IDTFC 245 (499)
Q Consensus 181 -~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~~~~~l-a~~~~~~m~-------~~g~~p~~~~~~~l-----i~~~~ 245 (499)
-.-.-.+.+.|+++.|.++++.+... .+.-...-+.| ++.+++--. -..+..+..-||.- .....
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 01123467899999999999888653 11111111111 222221000 00111122222222 22234
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
..|++++|.+.+++....+ ..-....||. .-.+...|++++|++.|-.+... +.-+..+...+...|-...+...
T Consensus 502 ~ngd~dka~~~ykeal~nd---asc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNND---ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred ecCcHHHHHHHHHHHHcCc---hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 5789999999999998765 2223333443 33457789999999999887643 23466777778888999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
|.+++.+.... ++.|+...+-|...|-+.|+-..|.+.+-+--.. ++-+..|...|...|....-++++...|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999877554 5668888999999999999999999887664442 445778889999999999999999999998654
Q ss_pred CCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 406 RGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 406 ~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
++|+..-|..+|..|. +.|++.+|++++++...+ ++-|...+.-|++.|...|-.
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 5899999999998766 689999999999998765 566888888889988887754
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=7.1e-08 Score=89.15 Aligned_cols=225 Identities=10% Similarity=0.035 Sum_probs=174.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
..+.-.|+.-.|.+-|+...+... .+...|--+...|....+.++..+.|+...+.+ +-++.+|..-...+.-.+
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDP----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCc----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 334557888899999999988762 223337777788999999999999999998875 456778888888888889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 401 (499)
++++|..=|++.+..... +...|--+..+..+.+.+++++..|++..+. ++-....|+.....+..+++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 999999999998876433 5566777777777899999999999999874 44456799999999999999999999999
Q ss_pred HHhHCC-----CCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 402 EMDKRG-----CAQDVD--TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 402 ~m~~~~-----~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
...+.. +..+.. ..-.++-.= =.+++..|.+++.+..+.+.+ ....|.+|...-...|+.++|+++|++-.
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 887642 111221 112222111 238899999999999888754 66789999999999999999999999865
Q ss_pred h
Q 036198 475 K 475 (499)
Q Consensus 475 ~ 475 (499)
.
T Consensus 565 ~ 565 (606)
T KOG0547|consen 565 Q 565 (606)
T ss_pred H
Confidence 4
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=1.6e-08 Score=101.90 Aligned_cols=217 Identities=11% Similarity=-0.020 Sum_probs=159.1
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
.+++++|...+++..+.+ +-+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|
T Consensus 317 ~~~~~~A~~~~~~Al~ld----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD----HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred chHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 355899999999999876 4577888888889999999999999999999875 44567788888999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 327 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
...++...+.+.. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++...
T Consensus 392 i~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 392 LQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999999887543 223334445556778999999999999876542223455677888888999999999999987654
Q ss_pred CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 407 GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 407 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.|+ ....+.+...|+..| ++|...++.+.+.. -.+....+ +-..|.-.|+.+.+... +++.+.
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 343 334455566677777 47777777766431 12222222 33345556777666655 777665
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2.8e-09 Score=93.28 Aligned_cols=233 Identities=12% Similarity=0.108 Sum_probs=197.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH-HHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY-KEVLE 315 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~ 315 (499)
-+.+.++|.+.|.+.+|++.|+...+. .|-+.||..+-+.|.+.++++.|+.+|.+-.+. .|-.+|| .-+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 378899999999999999999998885 467889999999999999999999999998876 4555554 55778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.+-..++.++|.++++...+... .++....++...|.-.++++.|+..|.++.+.|+ .+...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 88899999999999999887743 3677788888889999999999999999999997 578889999999999999999
Q ss_pred HHHHHHHHhHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 396 AFETWHEMDKRGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
++.-|.+....--.|+ ...|-.+-...+..|++..|.+.|+-.+..+. -....++.|.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999998876533343 34566677777789999999999999887764 36788999988889999999999999998
Q ss_pred HhhcCh
Q 036198 474 RKFYNP 479 (499)
Q Consensus 474 ~~~~~~ 479 (499)
....|.
T Consensus 456 ~s~~P~ 461 (478)
T KOG1129|consen 456 KSVMPD 461 (478)
T ss_pred hhhCcc
Confidence 776543
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=4.7e-07 Score=81.98 Aligned_cols=294 Identities=12% Similarity=0.040 Sum_probs=222.7
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~ 165 (499)
.+++-...++..|.+....... .+-. ....|-.-..+-. ..|+.+.+-.++.+..+...
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae-~~e~-p~l~~l~aA~AA~----qrgd~~~an~yL~eaae~~~--------------- 149 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAE-HGEQ-PVLAYLLAAEAAQ----QRGDEDRANRYLAEAAELAG--------------- 149 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhh-cCcc-hHHHHHHHHHHHH----hcccHHHHHHHHHHHhccCC---------------
Confidence 3444455666677766664322 2211 2233434445555 88999999999999887631
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036198 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFC 245 (499)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~ 245 (499)
.++...+-+..+.....|+++.|..-.+++.+- -+-.........++|.
T Consensus 150 --------~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----------------------~pr~~~vlrLa~r~y~ 198 (400)
T COG3071 150 --------DDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----------------------TPRHPEVLRLALRAYI 198 (400)
T ss_pred --------CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----------------------CcCChHHHHHHHHHHH
Confidence 366778888889999999999999988877541 1226778889999999
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPT-------AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
+.|++..+..+...+.+.+. --+ ..+|..+++-....+..+.-...|++..+. ..-++..-..++.-+.
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~---l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li 274 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGL---LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLI 274 (400)
T ss_pred HhccHHHHHHHHHHHHHccC---CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHH
Confidence 99999999999999999884 223 247788888877777777777777777654 3456677778889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHH
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 398 (499)
++|+.++|.++..+..+++..|+ -...-.+.+-++.+.-.+..+.-.+.- +-+...+..|-..|.+.+.+.+|.+
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999887766 223344567788887777777755432 2344788889999999999999999
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 399 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.|+...+. .|+..+|+.+..++.+.|+..+|.+..++....-
T Consensus 350 ~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 350 ALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99977765 7999999999999999999999999999877443
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=1e-07 Score=93.10 Aligned_cols=291 Identities=17% Similarity=0.166 Sum_probs=175.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|++++|++.++.-...- .............+.+.|+.++|..+|..+.++.|
T Consensus 16 e~g~~~~AL~~L~~~~~~I------------------------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-- 69 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQI------------------------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-- 69 (517)
T ss_pred HCCCHHHHHHHHHhhhhhC------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--
Confidence 7899999999997754432 23455678888899999999999999999887533
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTY-NTAIDTFCK-----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~-~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~ 284 (499)
+...| ..+..+.+- ..+.+...++++++.... |.......+.-.+..
T Consensus 70 ----------------------dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-----p~s~~~~rl~L~~~~ 122 (517)
T PF12569_consen 70 ----------------------DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-----PRSDAPRRLPLDFLE 122 (517)
T ss_pred ----------------------CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-----ccccchhHhhcccCC
Confidence 33333 333333311 124566677777776653 222222111111111
Q ss_pred cCCH-HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHh--hHHH
Q 036198 285 NDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----G----------YPPDIV--TYNC 347 (499)
Q Consensus 285 ~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~----------~~p~~~--~~~~ 347 (499)
...+ ..+..++..+...|+++ +|+.|-..|....+.+-..+++...... + -+|+.. ++.-
T Consensus 123 g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~ 199 (517)
T PF12569_consen 123 GDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF 199 (517)
T ss_pred HHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence 1122 23445555566666432 4555555555555555555555554322 1 123332 3344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
+...|...|++++|++++++.++.. |+ +..|..-.+.+-+.|++.+|.+.++..++.... |...-+..+..+.++|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCC
Confidence 4556667788888888888777643 54 456677777777788888888888777765433 5566666677777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRK--------FDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
++++|.+++......+..|-... ......+|.+.|++..|.+.|..+.+.|...
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888887777766554332221 1344567777788887777777776654443
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.3e-08 Score=89.08 Aligned_cols=236 Identities=10% Similarity=-0.019 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
|-.--+-+..+|.+.|.+.+|.+.|..-.. -.|-+.||-.|-+.|.+..+.+.|+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~------------------------q~~~~dTfllLskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLT------------------------QFPHPDTFLLLSKVYQRIDQPERALL 277 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhh------------------------cCCchhHHHHHHHHHHHhccHHHHHH
Confidence 334447889999999999999998887654 24577888899999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+|.+-.+.- +-++.-..-+.+.+-..++.++|.++|+...+.. +.++....++...|.-.++++.|+..++.+.+
T Consensus 278 ~~~~gld~f----P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 278 VIGEGLDSF----PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred HHhhhhhcC----CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 999988763 3444444556678888899999999999998764 55677777888889999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH
Q 036198 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 413 (499)
.|+. +...|+.+.-+|.-.+++|-++.-|++....--.|+ ..+|-.+-......|++.-|.+.|+.....+.. +..
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHH
Confidence 9987 889999999999999999999999999876543344 456777777778899999999999988776433 566
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.++.|.-.-.+.|++++|..+++...+..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 78888888889999999999999887654
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=3.2e-06 Score=78.24 Aligned_cols=397 Identities=13% Similarity=0.095 Sum_probs=267.6
Q ss_pred ccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCCCCCC--H--H-------HHHHHHHccCCChHHHHHHHH-H
Q 036198 37 VCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLT--T--D-------SVVGVLQRFQFEEKIAFRFFM-W 104 (499)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~~--~--~-------~~~~~l~~~~~~~~~a~~~f~-~ 104 (499)
+++.|+.+.+.+..+..++-.-+..--++..+..|-..++..++ | + .+..+|. .-..|.++|. |
T Consensus 92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg----Ni~gaRqiferW 167 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG----NIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----ccHHHHHHHHHH
Confidence 34555555555555555555555555555444444333322111 1 1 1222222 2235677776 5
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 036198 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLL 184 (499)
Q Consensus 105 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li 184 (499)
| ...|+...|.+.|+-=. +-+.++.|.+++++.+-. .|++..|--..
T Consensus 168 ~----~w~P~eqaW~sfI~fEl----RykeieraR~IYerfV~~-------------------------HP~v~~wikya 214 (677)
T KOG1915|consen 168 M----EWEPDEQAWLSFIKFEL----RYKEIERARSIYERFVLV-------------------------HPKVSNWIKYA 214 (677)
T ss_pred H----cCCCcHHHHHHHHHHHH----HhhHHHHHHHHHHHHhee-------------------------cccHHHHHHHH
Confidence 5 45799999999999988 899999999999998754 38888888888
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCCCChh---hHHHH------------HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 036198 185 DALCKCGLVDYAETICKRVKNKVKPNAN---TYNIL------------GMQTLEEMIQMGHAPD-NFTYNTAIDTFCKAR 248 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~---~~~~l------------a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 248 (499)
..=.++|++..|.++|+...+.+..|.. .+.+. |..++.-.++.-.+-. ...|..+...=-+-|
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 8888889999998888887653322221 12221 3334444444322211 334444444444455
Q ss_pred CHhHHHHH--------HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-------HhHHHH
Q 036198 249 MVTEAADL--------FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV-------STYKEV 313 (499)
Q Consensus 249 ~~~~a~~~--------~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l 313 (499)
+.....+. ++.+.+.+ +.|-.+|-..++.-...|+.+...++|+..... ++|-. ..|--+
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~n----p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKN----PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWI 369 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhC----CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHH
Confidence 54433332 34455553 567788989999989999999999999998865 34422 122211
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 314 ---LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL----CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 314 ---l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
+-.-....+.+.+.++++..++. ++....|+.-+=-.| .++.++..|.+++...+ |..|-..+|-..|..
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHH
Confidence 22223567899999999988874 454556665544444 46789999999998876 456888999999999
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKLPYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 465 (499)
-.+.+++|.+..+++...+.+. -|..+|......=...|+.+.|..+|.-.+++. +......|.+.|+--...|.+++
T Consensus 447 ElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 9999999999999999998753 367788887777778999999999999988764 34456677777777788999999
Q ss_pred HHHHHHHHHhhcCh
Q 036198 466 IHKLSDHMRKFYNP 479 (499)
Q Consensus 466 a~~~~~~m~~~~~~ 479 (499)
|..+++++.+.-.-
T Consensus 526 aR~LYerlL~rt~h 539 (677)
T KOG1915|consen 526 ARALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876443
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.17 E-value=1.4e-06 Score=83.66 Aligned_cols=368 Identities=11% Similarity=0.009 Sum_probs=210.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCccc-HHHHHHHHHHHHHh-----------hhcC-CC
Q 036198 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP-VDVLLMILKQYTEK-----------IKVK-TQ 174 (499)
Q Consensus 108 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~~l~~~~~~-----------~~~~-~~ 174 (499)
..|+..+..-|-.=...|- +.|..-.+..+.......|+..-+ ..++......|..+ .... .+
T Consensus 472 ~ngv~i~rdqWl~eAe~~e----~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACE----DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred hcceeecHHHHHHHHHHHh----hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 4455566666666555565 556666666666665555532111 12222222222211 1111 12
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~ 242 (499)
-+...|......--..|..+.-..+|.+....++-....|-.. |..++....+.... +...|-..+.
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavK 626 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVK 626 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 2344555555555555666666666666555444444333333 44555555554333 5556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcC
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAG 321 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g 321 (499)
.-....+++.|..+|.+....+ |+...|.--+..---.+..++|.+++++..+. -|+ ...|-.+-..+-+.+
T Consensus 627 le~en~e~eraR~llakar~~s-----gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSIS-----GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HhhccccHHHHHHHHHHHhccC-----CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 6666666666666666665543 45555555555555556666666666665554 222 233444444555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 401 (499)
+.+.|.+.|..=.+. ++-.+..|-.+...=-+.|.+-.|..+++...-.+. -+...|-..|+.-.+.|+.+.|..+..
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555443222 222334455555555556666667777766655442 355666666777777777666666554
Q ss_pred HHhHC-----------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 402 EMDKR-----------------------------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 402 ~m~~~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
+..+. .+..|....-.+...|.....+++|.+.|.+.++.+. ....+|.-
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~ 856 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAW 856 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHH
Confidence 43321 1334555666667777778889999999999998873 35678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHHh
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQK 490 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 490 (499)
+..-+..+|.-+.-.+++.+.....|..=..+..+.++
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 88999999999999999998888766655555554443
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=5.1e-08 Score=94.12 Aligned_cols=254 Identities=17% Similarity=0.085 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHHhCCCh
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEIN-ALNLLLDALCKCGLV 193 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~ 193 (499)
..+...+...|. ..|+++.|..++++..+.- -+.+ .-..|... ..+.+...|...+++
T Consensus 199 ~~~~~~La~~y~----~~g~~e~A~~l~k~Al~~l------------~k~~-----G~~hl~va~~l~~~a~~y~~~~k~ 257 (508)
T KOG1840|consen 199 LRTLRNLAEMYA----VQGRLEKAEPLCKQALRIL------------EKTS-----GLKHLVVASMLNILALVYRSLGKY 257 (508)
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHHHH------------HHcc-----CccCHHHHHHHHHHHHHHHHhccH
Confidence 355566788888 9999999999999876550 0000 00123333 344577889999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---CCCC
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST---ISSP 270 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~p 270 (499)
++|..+|+++.. +++.......+.-..+++.|..+|.+.|++++|...+++..+.-.. ...|
T Consensus 258 ~eAv~ly~~AL~---------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 258 DEAVNLYEEALT---------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHHHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 999999999754 3444433333434567888889999999999999888876543210 0122
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 036198 271 TA-KTYAIMIVALVQNDRMEECFSLLGHMINS---GCLP----DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GY 338 (499)
Q Consensus 271 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~ 338 (499)
.+ ..++.+...|...+++++|..++....+. -..+ -..+++.|-..|...|++++|.+++++.... +.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 22 23455666777788888888887765432 1111 2355677777777777777777777665432 11
Q ss_pred --CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CcC-hhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 339 --PP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIE----VGC-WPS-VQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 339 --~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
.+ ....++.+...|.+.+.+++|.++|.+... .|. .|+ ..+|..|...|...|++++|+++.+...
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 134556666666666777766666665432 221 122 3466666666767777777666665543
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=5.9e-08 Score=93.71 Aligned_cols=242 Identities=16% Similarity=0.159 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTK---GSTISSPTAKT-YAIMIVALVQNDRMEECFSLLGHMINS-----G- 302 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~- 302 (499)
-..+...+...|...|+++.|+.+++...+. +.....|...+ .+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999988764 10012344333 334667888999999999999998753 2
Q ss_pred -CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 036198 303 -CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-----GY-PPDI-VTYNCFLKVLCDNKNGDEALRLYGRMIEV--- 371 (499)
Q Consensus 303 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 371 (499)
.+.-..+++.|-.+|++.|++++|...++...+- |. .|.+ ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222456777888999999999998887765331 21 2222 34667778889999999999999876542
Q ss_pred CCCcC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHC-----C-CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH-
Q 036198 372 GCWPS----VQTYNMLISMYFELGEPDGAFETWHEMDKR-----G-CAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVV- 439 (499)
Q Consensus 372 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 439 (499)
-+.++ ..+++.|...|...|++++|++++++.... | ..+ ....++.+...|.+.++..+|.++|.+..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 458899999999999999999999987542 1 122 24567888889999999999999987654
Q ss_pred ---HCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 440 ---NKGLK-LP-YRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 440 ---~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
..|.. |+ ..+|..|...|...|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33422 22 4688999999999999999999988876
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=2.4e-07 Score=77.73 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 353 (499)
+..-+.-.|...|+...|.+-+++..+.. +.+..++..+...|.+.|+.+.|.+-|+........ +-.+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 44556667888888888888888888774 445667788888888888888888888887776433 5667788888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
..|++++|.+.|++....---+ -..+|..+.-+..+.|+.+.|.+.|++..+.... ...+.-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8889999998888887753222 2457778888888889999999999888776322 3345667778888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.+++.....+. ++..++-..|+.-.+.||.+.+-++=..+.+.||...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 88888877765 7888888888888888999988888888888877644
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.2e-07 Score=87.73 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=166.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297 (499)
Q Consensus 218 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 297 (499)
+..-|+..+.....++. .|--+..+|....+.++.++.|....+.+ +-+..+|..-...+.-.+++++|..=|++
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld----p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD----PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC----CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776554333 27777788999999999999999999886 34566777777777778889999999999
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 036198 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW--- 374 (499)
Q Consensus 298 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--- 374 (499)
.++.. +-+...|-.+.-+..+.++++++...|++.+++ ++..+..|+.....+..+++++.|.+.|+..++....
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 98874 445667777777888999999999999999887 6668899999999999999999999999998764211
Q ss_pred --cChhhH--HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 375 --PSVQTY--NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 375 --~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
.+..++ -+++.. .-.+++..|.++++...+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 498 ~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111111 122221 1348899999999999876322 445788999999999999999999998653
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=2.3e-07 Score=85.71 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036198 218 GMQTLEEMIQMG-HAPD--NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294 (499)
Q Consensus 218 a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 294 (499)
+..-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555555432 2222 3456666667777777777777777777764 34567777777777777777777777
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 036198 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374 (499)
Q Consensus 295 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 374 (499)
|+...+.. +-+..++..+..++...|++++|.+.|+...+.+ |+..........+...++.++|...|.+..... .
T Consensus 121 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 121 FDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 77777653 2235566666667777777777777777766653 222211111222334566777777776544321 2
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHC---CC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKR---GC--AQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
|+...+ .+ .....|+...+ +.+..+.+. .. .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 197 ~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222111 22 22234555443 244444321 00 11 22456666667777777777777777777655
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=6.1e-06 Score=80.96 Aligned_cols=274 Identities=14% Similarity=0.107 Sum_probs=191.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCC
Q 036198 94 EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173 (499)
Q Consensus 94 ~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (499)
..+.|++..... ...+.............+. +.|++++|..+|+.+.+.+
T Consensus 19 ~~~~AL~~L~~~--~~~I~Dk~~~~E~rA~ll~----kLg~~~eA~~~y~~Li~rN------------------------ 68 (517)
T PF12569_consen 19 DYEEALEHLEKN--EKQILDKLAVLEKRAELLL----KLGRKEEAEKIYRELIDRN------------------------ 68 (517)
T ss_pred CHHHHHHHHHhh--hhhCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC------------------------
Confidence 344555555432 2223333455566678888 9999999999999999998
Q ss_pred CCCHHH-HHHHHHHHHhC-----CChHHHHHHHHHhhcCCCCChh-------------hHHHHHHHHHHHHHHcCCCCCH
Q 036198 174 QPEINA-LNLLLDALCKC-----GLVDYAETICKRVKNKVKPNAN-------------TYNILGMQTLEEMIQMGHAPDN 234 (499)
Q Consensus 174 ~~~~~~-~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~p~~~-------------~~~~la~~~~~~m~~~g~~p~~ 234 (499)
|+... |..+..+.+-. .+.+...++|+++.... |... .|...+..++..+...|+++
T Consensus 69 -Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs-- 144 (517)
T PF12569_consen 69 -PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS-- 144 (517)
T ss_pred -CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch--
Confidence 44444 44444444222 35677788888886543 2111 22223788888888889763
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----C-------CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKG----S-------TISSPTA--KTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-------~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+|+.+-..|....+.+-..+++..+.... . ..-+|+. .++..+-..|...|++++|+.+++..+++
T Consensus 145 -lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 145 -LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred -HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45566666776666666677776665431 0 0124554 34566677888999999999999999987
Q ss_pred CCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh-
Q 036198 302 GCLPD-VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT- 379 (499)
Q Consensus 302 ~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~- 379 (499)
.|+ +..|..-.+.+-+.|++.+|.+.++........ |...=+-....+.+.|+.++|.+++......+..|-...
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 455 677888889999999999999999998887654 666666677888899999999999999887664333221
Q ss_pred -----H--HHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 380 -----Y--NMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 380 -----~--~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
| .....+|.+.|++..|++.|..+.+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 4556788899999998887776654
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=1.5e-05 Score=73.95 Aligned_cols=366 Identities=11% Similarity=0.064 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccH--HHHHHHHHHHHHh----
Q 036198 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV--DVLLMILKQYTEK---- 168 (499)
Q Consensus 95 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~~~l~~~~~~---- 168 (499)
...|..+|+.+.... .-+...|-.-+..=. ++++...|..++++....-+. ++. .-+..+-......
T Consensus 89 ~~RARSv~ERALdvd--~r~itLWlkYae~Em----knk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 89 IQRARSVFERALDVD--YRNITLWLKYAEFEM----KNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHhcc--cccchHHHHHHHHHH----hhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHH
Confidence 356778887764332 224455555555555 788888888888887655321 110 0011000000000
Q ss_pred ----hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHc-CC-
Q 036198 169 ----IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM-GH- 230 (499)
Q Consensus 169 ----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~-g~- 230 (499)
.-...+|+..+|++.|+.=.+....+.|..+|++..- +.|++.+|--. +..+++...+. |-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 1124578888888888888888888888888887654 12444444322 33333333221 10
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH--------HHHHH
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLL--------GHMIN 300 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~--------~~m~~ 300 (499)
.-+...|.+....=.++..++.|.-+|+-..+.- +.+ ...|......=-+-|+.....+.. +.+.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 0011122222222223344444444444444432 111 233333333333344433332221 22222
Q ss_pred cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHH----H----HHHHcCCHHHHHHHHHHHHH
Q 036198 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--VTYNCFL----K----VLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 301 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li----~----~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+ +-|-.+|--.++.--..|+.+...++|+..+.. ++|-. ..|.-.| + .=....+.+.+.++|+...+
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 21 334444444455555556666666666655543 22211 0111111 1 11234555555666655555
Q ss_pred CCCCcChhhHHHHHHHH----HhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 036198 371 VGCWPSVQTYNMLISMY----FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 371 ~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 446 (499)
. ++-...||.-+--.| .++.++..|.+++.... |..|-..+|...|..=.+.+.++....++++.++-+.. +
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~ 470 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-N 470 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-h
Confidence 1 212223443332222 24455566666555543 33566666666666666666666666666666665532 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 447 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
-.+|......-...|+.+.|..+|+-......
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 55555555555556666666666666665543
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.7e-06 Score=79.99 Aligned_cols=221 Identities=10% Similarity=-0.039 Sum_probs=159.2
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
+..+.++.-+.++..... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRD--LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHcccc--CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 467788888888876542 2222 4568888888999999999999999998874 4567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
|.+.|+...+.... +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|.+.+.....
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999886433 46778888888999999999999999998754 4433222222334456789999999976554
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLK---LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 406 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.. .|+...+ .+.. ...|+..++ +.+..+.+. .+. .....|..+...+.+.|++++|...|++..+..++
T Consensus 194 ~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 KL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 32 3332222 2222 234555443 344444422 111 13458889999999999999999999999988753
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.94 E-value=3.5e-05 Score=74.19 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=76.6
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHcc--CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH
Q 036198 68 MEKALDSLGVPLTTDSVVGVLQRF--QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145 (499)
Q Consensus 68 ~~~al~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m 145 (499)
++.||..+-+.-+..++.-.+.-+ +.-|..+..+++.-.+ .++..-+--|..++ +.+++++|.+.+...
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~----~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLA----KSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHH----hccchHHHHHHHHHh
Confidence 344555554444443333333222 2334566777765432 35566788888899 899999999999887
Q ss_pred HHcCCC-----cccHHHHHHHHHHHHHh------------hhc--CCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHhh
Q 036198 146 KRNNKV-----FVPVDVLLMILKQYTEK------------IKV--KTQPEI--NALNLLLDALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 146 ~~~~~~-----~~~~~~~~~~l~~~~~~------------~~~--~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (499)
...... +.....+..+-....+. .+. +.-+|. ..|++|.+.|.+.|.+++|..+|++..
T Consensus 196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 765421 11111222222222211 122 223443 368999999999999999999999865
Q ss_pred c
Q 036198 205 N 205 (499)
Q Consensus 205 ~ 205 (499)
.
T Consensus 276 ~ 276 (835)
T KOG2047|consen 276 Q 276 (835)
T ss_pred H
Confidence 5
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.8e-06 Score=80.36 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=190.7
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..++|.+..++.+...+.. ++....+..-|..+...|+..+-..+=.++.+.
T Consensus 256 ~~c~f~~c~kit~~lle~d------------------------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---- 307 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD------------------------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---- 307 (611)
T ss_pred HcChHHHHHHHhHHHHhhC------------------------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh----
Confidence 6677777777777766654 345555555566666777666655555555442
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
.+-.+.+|-++.--|...|+..+|.+.|.+....+. .=...|-.....++-.+.-++
T Consensus 308 -------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~----~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 308 -------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP----TFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred -------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc----cccHHHHHHhHHhhhcchHHH
Confidence 333567777787777778899999999988766542 235678888888888888888
Q ss_pred HHHHHHHHHHc--CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036198 291 CFSLLGHMINS--GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368 (499)
Q Consensus 291 a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 368 (499)
|...+....+. |.. -+..| +---|.+.+..+.|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..
T Consensus 365 AmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 88888777654 211 12222 2334677888889999988877663 347777777777777788888998888876
Q ss_pred HHC----C-CC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 369 IEV----G-CW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 369 ~~~----~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
... + -+ .-..+++.|..+|.+.+.+++|+..++...... +-+..++..+.-.|...|+++.|.+.|.+.+.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~-- 517 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA-- 517 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--
Confidence 521 1 01 134567888888999999999999998887652 44777888888888889999999999988764
Q ss_pred CCCCHHHHHHHHHHHHh
Q 036198 443 LKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 443 ~~p~~~~~~~ll~~~~~ 459 (499)
+.|+..+...++..+..
T Consensus 518 l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 518 LKPDNIFISELLKLAIE 534 (611)
T ss_pred cCCccHHHHHHHHHHHH
Confidence 45777777777665543
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.92 E-value=6.8e-05 Score=72.46 Aligned_cols=230 Identities=11% Similarity=0.033 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..|......=-..|..+....+|++..... +-....|-.....+-..|+...|..++....+.. +-+...|-.-+
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~----pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaav 625 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQC----PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAV 625 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhC----CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 333333333334444444444444444432 2223333333444444455555555554444432 12334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh-hHHHHHHHHHhcCCc
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ-TYNMLISMYFELGEP 393 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~ 393 (499)
+....+.+++.|..+|.+.... .|+...|.--+..---.++.++|.+++++..+. .|+.. .|-.+-+.+-+.+++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 4444555555555555444332 233334333333333344555555555444432 23322 333444444444444
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
+.|.+.|..-.+. ++.....|-.+...=-+.|.+-.|..++++..-++.+ +...|-..|+.-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444433322 1112223333333333444555555555555444432 4445555555555555555555554444
Q ss_pred Hh
Q 036198 474 RK 475 (499)
Q Consensus 474 ~~ 475 (499)
.+
T Consensus 780 LQ 781 (913)
T KOG0495|consen 780 LQ 781 (913)
T ss_pred HH
Confidence 44
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.92 E-value=4.3e-05 Score=73.61 Aligned_cols=294 Identities=14% Similarity=0.151 Sum_probs=177.3
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~ 165 (499)
+.+..++..|+.=+.+...++.+..+..+..+|+.-+.++= ..+.+....++-...+...-| .+-..+.+.|
T Consensus 93 r~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----vtqH~rIW~lyl~Fv~~~~lP---ets~rvyrRY 164 (835)
T KOG2047|consen 93 RCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALP-----VTQHDRIWDLYLKFVESHGLP---ETSIRVYRRY 164 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----hHhhccchHHHHHHHHhCCCh---HHHHHHHHHH
Confidence 33344567777778888888888888888888988888876 345566666666666655322 3444455555
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-------CCCChhhHHHH---------------HHHHHH
Q 036198 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-------VKPNANTYNIL---------------GMQTLE 223 (499)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~p~~~~~~~l---------------a~~~~~ 223 (499)
. +.++..-+..|..+++.+++++|.+.+..+... .+.+...|..+ +..++.
T Consensus 165 L-------k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 165 L-------KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred H-------hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 4 335556888899999999999999999988652 45555566655 333443
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---------------
Q 036198 224 EMIQMGHAPDN--FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND--------------- 286 (499)
Q Consensus 224 ~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~--------------- 286 (499)
.++.. -+|. ..|++|.+-|.+.|.+++|.++|++....- .+..-|..+.++|+.-.
T Consensus 238 ~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-----~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 238 GGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-----MTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred hhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-----eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33322 2343 368999999999999999999999887753 34555555555554421
Q ss_pred -------CHHHHHHHHHHHHHcCC-----------CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------H
Q 036198 287 -------RMEECFSLLGHMINSGC-----------LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD------I 342 (499)
Q Consensus 287 -------~~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~------~ 342 (499)
+++-...-|+.+...+. +-+...|..- .-+..|+..+-...+.+..+. +.|. .
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 12233333444333210 1111122111 112234555555566655443 2221 2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---hhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS---VQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
..|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|.++.+...
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 3466677777777888888888777766433211 3345544455555666777777666543
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=1.2e-05 Score=77.01 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=138.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
.+..+.+.+.++..... .+........+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 93 ~~~~~~~~~~l~~~~~~----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 93 SGMRDHVARVLPLWAPE----NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred ccCchhHHHHHhccCcC----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 44555555555441111 22334455566678889999999999999999875 44566778888899999999999
Q ss_pred HHHHHHHHhCCC-CCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcChhhH-H--HHHHHHHhcCCchHHHHH
Q 036198 327 YKFLEEMGNKGY-PPDI--VTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-WPSVQTY-N--MLISMYFELGEPDGAFET 399 (499)
Q Consensus 327 ~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~ 399 (499)
...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 999998876532 2232 3455778888999999999999999864332 1112111 1 233333444544333333
Q ss_pred --H-HHHhHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC------CCHHHHHHHH--HHHHhcCCHHHHH
Q 036198 400 --W-HEMDKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK------LPYRKFDSYL--MQLSVIGDLGAIH 467 (499)
Q Consensus 400 --~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~ll--~~~~~~g~~~~a~ 467 (499)
+ ..-..... ............++...|+.++|..+++.+...... ....+-..++ .++...|+.++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 1 11111100 111122225666777899999999999988753221 1111222233 4456889999999
Q ss_pred HHHHHHHhh
Q 036198 468 KLSDHMRKF 476 (499)
Q Consensus 468 ~~~~~m~~~ 476 (499)
+.+......
T Consensus 328 ~~L~~al~~ 336 (355)
T cd05804 328 ELLGPVRDD 336 (355)
T ss_pred HHHHHHHHH
Confidence 988877653
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.6e-05 Score=73.11 Aligned_cols=277 Identities=9% Similarity=-0.059 Sum_probs=214.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 252 (499)
..-+......-.+-+...+++.+..++++.+.+. .++....+..-|.++.+.|+..+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----------------------dpfh~~~~~~~ia~l~el~~~n~ 296 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-----------------------DPFHLPCLPLHIACLYELGKSNK 296 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----------------------CCCCcchHHHHHHHHHHhcccch
Confidence 3445566666677777788999999988887764 23344455556678999999888
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
-..+=.++.+.. +-...+|-++.-.|...|+.++|.+.|.+..... +.-...|-...+.|+-.|..|+|...+..
T Consensus 297 Lf~lsh~LV~~y----P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 297 LFLLSHKLVDLY----PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred HHHHHHHHHHhC----CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 888888888875 4567899999999999999999999999887553 12245677788999999999999998877
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCC-
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCA- 409 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~- 409 (499)
.-+.- +-....+--+..-|.+.++.+.|.+.|.+..... +.|+...+-+.-.....+.+.+|...|+..... .+.
T Consensus 372 Aarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 372 AARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 65541 1122233345566888999999999999987643 345677787777777889999999999987632 111
Q ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 410 ---QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 410 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
--..+++.|..+|.+.+.+++|+..+++.+.... -+..++.++.-.|...|+++.|.+.|.+..-..+..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 1345688888999999999999999999998864 488999999999999999999999999987766554
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.4e-05 Score=69.14 Aligned_cols=281 Identities=12% Similarity=-0.003 Sum_probs=183.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCH
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN-FTYNTAIDTFCKARMV 250 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 250 (499)
.++-|+.....+...+...|+.++|...|++... +.|+. .........+.+.|+.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~------------------------~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC------------------------ANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh------------------------CChhhhhhHHHHHHHHHhccCH
Confidence 3445566677777777777777777777776543 11211 1112223334566677
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
++...+...+.... .-+...|..-.......++++.|+.+-++.++.. +-+...|-.=-..+...|++++|.-.|
T Consensus 283 e~~~~L~~~Lf~~~----~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV----KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred hhHHHHHHHHHhhh----hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 77666666665543 2344455555555556677777777777766543 223333433335667788888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHH-HHHH-hcCCchHHHHHHHHHhHCCC
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-SMYF-ELGEPDGAFETWHEMDKRGC 408 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~ 408 (499)
+..+... +-+...|.-|+..|...|.+.+|..+-+...+. +..+..+.+.+- ..|. ....-++|.++++.-...
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 8876653 236788888999988888888888777665543 223455555442 2222 223456788887776553
Q ss_pred CCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 409 AQDV-DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 409 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
.|+- ...+.+...+...|+.+.+..+++..+.. .||....+.|.+.+...+.+.+|.+.|....+..|..-...-++
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4543 35566677788889999999999887765 47888888999999999999999999998888877765544443
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.2e-07 Score=86.39 Aligned_cols=232 Identities=13% Similarity=0.085 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHHhHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYK 311 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~ 311 (499)
+......+.+++...|+.+.++. ++... ..|.......+...+...++-+.+..-+.+....+..+ +.....
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~----~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~ 106 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLS---EIKKS----SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQL 106 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHH---HS-TT----SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHH---HhccC----CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHH
Confidence 34455667888999998775543 33232 35666666555555544455666666665554443332 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh--
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE-- 389 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-- 389 (499)
.....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++..
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHH
Confidence 3335667789999999988653 367777888999999999999999999998753 33 444445555443
Q ss_pred --cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 036198 390 --LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAI 466 (499)
Q Consensus 390 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a 466 (499)
.+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.. ++.++..++-+....|+. +.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHH
T ss_pred hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHH
Confidence 34799999999998765 5678889999999999999999999999998876643 677888888888888888 778
Q ss_pred HHHHHHHHhhcChhHH
Q 036198 467 HKLSDHMRKFYNPVIA 482 (499)
Q Consensus 467 ~~~~~~m~~~~~~~~~ 482 (499)
.+++.++++.+|.+++
T Consensus 256 ~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCCChH
Confidence 8999999988776554
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=3.5e-05 Score=75.80 Aligned_cols=361 Identities=14% Similarity=0.129 Sum_probs=229.4
Q ss_pred CCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-----------hhcCC---CCC
Q 036198 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-----------IKVKT---QPE 176 (499)
Q Consensus 111 ~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~---~~~ 176 (499)
+.-+...|..+--++. ++|+++.+.+.|++..... ....+.+...--.+... ...+. +++
T Consensus 319 ~qnd~ai~d~Lt~al~----~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS----RCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3348888999988888 9999999999999865433 22222222222111111 22222 234
Q ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHhhc-------CCCCChhhHHHH---------------------HHHHHHHHHH
Q 036198 177 INALNLLLDALCK-CGLVDYAETICKRVKN-------KVKPNANTYNIL---------------------GMQTLEEMIQ 227 (499)
Q Consensus 177 ~~~~~~li~~~~~-~g~~~~A~~~~~~m~~-------~~~p~~~~~~~l---------------------a~~~~~~m~~ 227 (499)
...+-..-..|.+ .|.+++++..-.+... .++|-..-+..+ +++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 4455444445543 3666666555444332 244444333333 7888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--
Q 036198 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCL-- 304 (499)
Q Consensus 228 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~-- 304 (499)
.+.. |+.....+---|+..++++.|.+..++..+-+ ...+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~---~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALN---RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 6554 33444445566777889999999999999885 3568899999999999999999999999877653 210
Q ss_pred ----------------cCHHhHHHHHHHHH------hcC-----------------CHHHHHHHHHHH--------HhCC
Q 036198 305 ----------------PDVSTYKEVLEGMC------LAG-----------------KVEEAYKFLEEM--------GNKG 337 (499)
Q Consensus 305 ----------------~~~~~~~~ll~~~~------~~g-----------------~~~~a~~~~~~m--------~~~~ 337 (499)
-...|...++..+- ..+ +..+|.+....+ +..|
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 00111222222111 000 111111111000 0001
Q ss_pred ---------CC--CC------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 338 ---------YP--PD------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 338 ---------~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
.. |+ ...|......+.+.+..++|...+.+..... ......|......+...|.+++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 01 11 1234455667778888888888887776643 344566666667778889999999999
Q ss_pred HHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 401 HEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACF--LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 401 ~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
...... .| ++.+..++...+.+.|+..-|.. ++.++.+.+. .+...|..+...+.+.|+.+.|.+.|....+..
T Consensus 708 ~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 987765 33 44577888888999898777776 9999999884 488999999999999999999999999988876
Q ss_pred ChhHHHHH
Q 036198 478 NPVIARRL 485 (499)
Q Consensus 478 ~~~~~~~~ 485 (499)
+..+...+
T Consensus 785 ~S~PV~pF 792 (799)
T KOG4162|consen 785 ESNPVLPF 792 (799)
T ss_pred cCCCcccc
Confidence 65554433
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=1e-05 Score=68.06 Aligned_cols=207 Identities=10% Similarity=-0.044 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
+...+.-.|...|+...|..-+++..+++ +-+..+|..+...|.+.|..+.|.+.|+...+.. +-+..+.|..-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH
Confidence 44567788999999999999999999986 4567899999999999999999999999999874 456778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
.+|..|++++|...|+.....-.-+ -..+|..+.-+..+.|+.+.|...|++..+... -...+.-.+.....+.|++.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccch
Confidence 9999999999999999987762222 246788888888899999999999999988642 23457778888889999999
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 451 (499)
.|..+++.....+. ++..+....|+.--..|+.+.+-++=.++... -|...-|.
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 99999999988765 88888888899888999998888776666554 24444443
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.7e-05 Score=72.23 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=190.8
Q ss_pred cCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 036198 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186 (499)
Q Consensus 107 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~ 186 (499)
....++-|+.....+.+.+. ..|+.+.|...|+.....++ -++.......-.
T Consensus 224 ~~~~lr~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~dp------------------------y~i~~MD~Ya~L 275 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCANP------------------------DNVEAMDLYAVL 275 (564)
T ss_pred hhccCCccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhCCh------------------------hhhhhHHHHHHH
Confidence 34456668888888888888 89999999999998776552 111222222334
Q ss_pred HHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 036198 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 266 (499)
+.+.|+.+....+...+... ..-....|..-........+++.|+.+-++..+..
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~-----------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-- 330 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAK-----------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-- 330 (564)
T ss_pred HHhccCHhhHHHHHHHHHhh-----------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--
Confidence 56677888777776665432 01133344444555566778888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 036198 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346 (499)
Q Consensus 267 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (499)
+.+...|-.-...+...++.++|.-.|+..+... +-+...|..|++.|...|++.+|.-+-+...+. ++.+..+.+
T Consensus 331 --~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 331 --PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred --cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 3456666666677888889999998888887653 456788999999999999998888776654443 223444544
Q ss_pred HHH-HHHH-HcCCHHHHHHHHHHHHHCCCCcCh-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 036198 347 CFL-KVLC-DNKNGDEALRLYGRMIEVGCWPSV-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423 (499)
Q Consensus 347 ~li-~~~~-~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 423 (499)
.+. ..+. ....-++|.++++.-... .|+- ...+.+...|...|..+++..+++.-... .||....+.|.+.+.
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 442 2222 233457788888776653 3553 35567777788888999999998887664 688888889989888
Q ss_pred hCCCHHHHHHHHHHHHHCC
Q 036198 424 DCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~ 442 (499)
..+.+.+|++.|...+..+
T Consensus 483 A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 8899999998888887765
No 80
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=1e-08 Score=59.65 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=32.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 036198 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (499)
.|+.||..+||++|++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3689999999999999999999999999999984
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=7.6e-05 Score=71.44 Aligned_cols=204 Identities=11% Similarity=-0.027 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCH--HhH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC-LPDV--STY 310 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~ 310 (499)
......+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+..- .++. ..|
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~----p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN----PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 4455566778899999999999999999975 44577888899999999999999999999886532 1232 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhH-H--HHHHHHHHcCCHHHHHHH--HHHHHHCCCCcChhhH--HH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTY-N--CFLKVLCDNKNGDEALRL--YGRMIEVGCWPSVQTY--NM 382 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~~~~~~~~--~~ 382 (499)
..+...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. ...............+ ..
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 269 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLH 269 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 5678889999999999999999864432 1122111 1 223333344543333333 2111111111111122 35
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCC---C---HHHHHHHHH--HHHhCCCHHHHHHHHHHHHHC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQ---D---VDTYCVMID--GLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p---~---~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~ 441 (499)
...++...|+.+.|..++..+......+ . ..+-..++. ++...|+.++|.+.+......
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667788899999999999986632220 1 111222333 445789999999999887654
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.1e-08 Score=59.53 Aligned_cols=33 Identities=55% Similarity=0.810 Sum_probs=26.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 228 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
.|+.||..||+++|++||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367788888888888888888888888888776
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.7e-05 Score=82.71 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-----AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 307 (499)
+...|-..|......++.++|.+++++.+..- .+. .-.|.++++.-..-|.-+...++|++..+.. ..-
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 66788999999999999999999999988652 222 3467888888788888899999999998863 345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---hhhHHHHH
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS---VQTYNMLI 384 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li 384 (499)
..|..|...|.+.++.++|.++++.|.+. +.-....|...+..+.++.+-+.|..++++..+. -|- .....-.+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 67889999999999999999999999886 3347789999999999999999999999998874 233 33444555
Q ss_pred HHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 036198 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGD 462 (499)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~ 462 (499)
..-.+.|+.+++..+|+.....- +--...|+..|+.=.++|+.+.+..+|++....++.|- ...|.-++..-...|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 55678899999999999887652 23567899999999999999999999999999988765 3477788877777888
Q ss_pred HHHHHHHHHHHHhh
Q 036198 463 LGAIHKLSDHMRKF 476 (499)
Q Consensus 463 ~~~a~~~~~~m~~~ 476 (499)
-+.++.+=.+..++
T Consensus 1687 e~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKEY 1700 (1710)
T ss_pred hhhHHHHHHHHHHH
Confidence 77776666665554
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=9.7e-06 Score=70.66 Aligned_cols=182 Identities=11% Similarity=0.136 Sum_probs=94.5
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
+.+++-.+. +..+++.|++++..-.+.. +.+....+.|..+|....++..|-
T Consensus 13 ftaviy~lI----~d~ry~DaI~~l~s~~Er~------------------------p~~rAgLSlLgyCYY~~Q~f~~AA 64 (459)
T KOG4340|consen 13 FTAVVYRLI----RDARYADAIQLLGSELERS------------------------PRSRAGLSLLGYCYYRLQEFALAA 64 (459)
T ss_pred hHHHHHHHH----HHhhHHHHHHHHHHHHhcC------------------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 555666666 7888999999888776665 236677888888899999999999
Q ss_pred HHHHHhhcCCCCChhhHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHHHH
Q 036198 198 TICKRVKNKVKPNANTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDT--FCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~l-------------a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~ 262 (499)
..|+++... -|...-|... |+.+...|.+. |+...-..-+.+ .-..+++..+..+.++...
T Consensus 65 ~CYeQL~ql-~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~ 140 (459)
T KOG4340|consen 65 ECYEQLGQL-HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS 140 (459)
T ss_pred HHHHHHHhh-ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC
Confidence 999988652 1222222111 23333322221 111111111111 1123444444444444432
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 263 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
.+ +..+.+...-...+.|+++.|.+-|+...+-+---....|+..+ +..+.|+.+.|++...++.++|+
T Consensus 141 en------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 141 EN------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred CC------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 22 22333333333345566666666666655433222334454333 33344566666666666655543
No 85
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00041 Score=65.81 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 323 VEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 323 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
.+...++++++... .+.| .-+|...++.-.+...++.|..+|.+..+.+..+ ++..++++|..|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55666667666554 2333 4578889999999999999999999999988777 7788899999888 58889999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+.-.++ ..-+..--...+.-+...|+-..|..+|++.+..++.|+ ...|..++.-=..-|+...+.++-+++...++
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 975544 122333345677888889999999999999998866655 46899999988999999999999999998888
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=0.00036 Score=62.39 Aligned_cols=308 Identities=11% Similarity=0.066 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHH-H
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTY-N 238 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~-~ 238 (499)
.++.-.-.+...+...|++.+|+.-|....++ |...|.++ |+.-+...++ .+||...- -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence 35555667778888888888888888887765 33333333 4444555544 45554321 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----------HH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA----------KT--YAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----------~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 306 (499)
.-...+.+.|+++.|..=|+...+..... ..+. .. ....+..+..+|+...|......+.+.. +.|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 22356789999999999999998875210 0111 11 2234556677899999999999999874 678
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh-H---HH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT-Y---NM 382 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~---~~ 382 (499)
...|..-..+|...|++..|..=++...+..-. +..++--+-..+...|+.+.++....+..+.+ ||... | -.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHH
Confidence 889999999999999999999888777665433 45556666777888999999999998888743 55332 2 11
Q ss_pred -------H--HHHHHhcCCchHHHHHHHHHhHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 383 -------L--ISMYFELGEPDGAFETWHEMDKRGCAQDV---DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 383 -------l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
| +......++|.++.+-.+...+....... ..+..+-.++...|.+.+|++...+.++.. +.|..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHH
Confidence 1 22334567788888877777665322122 234455667777899999999999998764 2247788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHHhhhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVR 493 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 493 (499)
.--..+|.-...++.|+.-|+...+..+....-+-++....+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8888999999999999999999998887776666666555443
No 87
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=0.00016 Score=66.96 Aligned_cols=235 Identities=11% Similarity=0.028 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
+..+-..+...++.++|+.+..++.+.. +-+..+|+.--.++...| ++++++..++++.+.. +.+..+|+.--.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 3444455566778889999999888864 334556666666666666 5788999998888764 334455654444
Q ss_pred HHHhcCCH--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc---
Q 036198 316 GMCLAGKV--EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL--- 390 (499)
Q Consensus 316 ~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--- 390 (499)
.+.+.|+. +++.++++.+.+.+.+ +..+|+...-++...|+++++++.++++++.+. -+...|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccc
Confidence 45555653 6778888888877654 778888888888888999999999999988764 4556666655555443
Q ss_pred CCc----hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 036198 391 GEP----DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC----SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG- 461 (499)
Q Consensus 391 ~~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g- 461 (499)
|.. +++.+....+.... +-|...|+-+...+... ++..+|.+.+.+....++ .+...+..|++.|+...
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhc
Confidence 222 35666665665542 23566777777777663 344668888888766553 36777888888887632
Q ss_pred -----------------CHHHHHHHHHHHHhhcChhH
Q 036198 462 -----------------DLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 462 -----------------~~~~a~~~~~~m~~~~~~~~ 481 (499)
..++|.++++.+ +.+.|.-
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~d~ir 306 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSEL-EVADPMR 306 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHH-HhhCcHH
Confidence 347799999999 4555543
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=8e-05 Score=77.86 Aligned_cols=248 Identities=13% Similarity=0.105 Sum_probs=164.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCC
Q 036198 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174 (499)
Q Consensus 95 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (499)
|..|-.|-+.+...++ +...|-..|.... ..+..++|.++.++....=- +... .
T Consensus 1441 pesaeDferlvrssPN---SSi~WI~YMaf~L----elsEiekAR~iaerAL~tIN-~REe------------------e 1494 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPN---SSILWIRYMAFHL----ELSEIEKARKIAERALKTIN-FREE------------------E 1494 (1710)
T ss_pred CcCHHHHHHHHhcCCC---cchHHHHHHHHHh----hhhhhHHHHHHHHHHhhhCC-cchh------------------H
Confidence 3344455544444443 4555666666666 77888888888888664320 0000 0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 254 (499)
--...|.++++.-...|.-+...++|++..+- --.-..|..|...|.+.+++++|.
T Consensus 1495 EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy------------------------cd~~~V~~~L~~iy~k~ek~~~A~ 1550 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAYGTEESLKKVFERACQY------------------------CDAYTVHLKLLGIYEKSEKNDEAD 1550 (1710)
T ss_pred HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh------------------------cchHHHHHHHHHHHHHhhcchhHH
Confidence 11236777777777777777777888777651 112346778888888888888888
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 255 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
++++.|.++- .-....|...+..+.+.++-+.|..++.+..+. .|. .......+..-.+.|+.+.+..+|+
T Consensus 1551 ell~~m~KKF----~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1551 ELLRLMLKKF----GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred HHHHHHHHHh----cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 8888888773 346678888888888888888888888877765 233 3344445566677888888888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh--hhHHHHHHHHHhcCCchHHHHH
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV--QTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~ 399 (499)
.......+ -...|+..|..-.+.|+.+.+..+|++....++.|-. ..|.-.+..=-+.|+-+.++.+
T Consensus 1625 gll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1625 GLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 87766433 5667888888888888888888888888887765542 3455555554555555544443
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00054 Score=61.56 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=128.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHcCCCcCH-HhHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI-----VALVQNDRMEECFSLLGHMINSGCLPDV-STYKE 312 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ 312 (499)
.++--|.+.+++.+|..+.+++.. ..|-....-.+. .-......+.-|.+.|.-.-+++..-|. ..-.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P-----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP-----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC-----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 455567888999999988876532 223222222222 1122223355666666655555544333 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH-HHHHHHHHhcC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY-NMLISMYFELG 391 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~ 391 (499)
+...+.-..++|+++-.+..+...-..-|... -.+..+++..|.+.+|+++|-.+....++ |..+| ..|.++|.+++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 66666777788999888888876643333333 45778899999999999999887654443 45555 56678889999
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCV-MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
.++.|++++-.+... .+..+.-. +..-|.+.+.+--|-+.|+.+...+ |++..|
T Consensus 443 kP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred CchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 999999887766432 23333333 4456778898888888888887654 454444
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=1.9e-05 Score=70.67 Aligned_cols=189 Identities=9% Similarity=-0.041 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--h
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--V 343 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~ 343 (499)
......+..+...+...|++++|...|+++.+.. +.+ ...+..+..++...|++++|...++.+.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4567788888888999999999999999988753 122 245677788899999999999999999876432111 1
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCcChh-hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 344 TYNCFLKVLCDN--------KNGDEALRLYGRMIEVGCWPSVQ-TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 344 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
++..+..++.+. |+++.|.+.++.+.+.. |+.. .+..+... .. ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HHH--------HH
Confidence 344444555443 67888888888887753 4432 22222111 10 000 000 01
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGL--KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
...+...+.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+...++
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12455678899999999999999987642 22457888999999999999999999999988775
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.52 E-value=0.0013 Score=63.93 Aligned_cols=363 Identities=14% Similarity=0.112 Sum_probs=188.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHH------HHHHHHHHh
Q 036198 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL------MILKQYTEK 168 (499)
Q Consensus 95 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------~~l~~~~~~ 168 (499)
.+.|....+...+ +-.-+.+.|..+.-.+- ....+++|...|+.....+ +.....+. .-++-+...
T Consensus 57 ~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R----~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 57 KEEAYELVRLGLR--NDLKSHVCWHVLGLLQR----SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hHHHHHHHHHHhc--cCcccchhHHHHHHHHh----hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhH
Confidence 3446565554432 11236677877766666 7889999999999988877 33333222 222222111
Q ss_pred -----hhcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--CCChhhHHHH---------------HHHHHHHH
Q 036198 169 -----IKVKTQPE-INALNLLLDALCKCGLVDYAETICKRVKNKV--KPNANTYNIL---------------GMQTLEEM 225 (499)
Q Consensus 169 -----~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~~~~~~l---------------a~~~~~~m 225 (499)
.-....|+ -..|..+..++.-.|+...|..+.+...... .|+...+... -.+.++.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 11223343 4568888888888999999999998887642 4555554433 11222222
Q ss_pred HHc-CCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHHc
Q 036198 226 IQM-GHAPDNFT-YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV-ALVQNDRMEECF-SLLGHMINS 301 (499)
Q Consensus 226 ~~~-g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~m~~~ 301 (499)
.+. +...|-.. -.+-...+.+.+++++|..++..+.... ||...|.-.+. ++.+..+.-++. .+|....+.
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 211 00111111 1233455667777777777777777764 55554444443 333333333333 444444332
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCC-----
Q 036198 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI----EVG----- 372 (499)
Q Consensus 302 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~----- 372 (499)
.+-....-..=+.......-.+..-+++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..|
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 10000000000111111222333344455555666543 33344443322221111111111111 111
Q ss_pred -----CCcChh--hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 036198 373 -----CWPSVQ--TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444 (499)
Q Consensus 373 -----~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 444 (499)
-+|+.. ++-.++..|-+.|+++.|...++...++ .|+.. -|..=.+.+...|++++|..++++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~- 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT- 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-
Confidence 034443 3345666777788888888888877765 44432 343444667777888888888888776653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 445 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
+|...-..-..-..+..+.++|.++.....+.+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 455444455556667777777777776665544
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=6.1e-06 Score=75.27 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
......+.+++...|+.+.+. .++... -.|.......+...+...++-+.+..-
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-----------------------~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKS-----------------------SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TT-----------------------SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccC-----------------------CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 334556677788888776543 333322 244554444444333332334444444
Q ss_pred HHHHHHcCCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 257 FEFMRTKGSTISSPTAKTYAI-MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+++..... ..++..++.. ....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+
T Consensus 89 l~~~~~~~---~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 89 LKELLADQ---AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHCCCTS------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHhc---cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43332222 1222223322 223455578888888877542 4566777788888999999999999999887
Q ss_pred CCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC
Q 036198 336 KGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 411 (499)
.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.... +
T Consensus 160 ~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 63 33444445555443 23688999999997654 4577888888888899999999999998887765322 4
Q ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 036198 412 VDTYCVMIDGLFDCSKV-EEACFLLEEVVNK 441 (499)
Q Consensus 412 ~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 441 (499)
..+...++.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55666677776777776 6677788887765
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=6.9e-05 Score=73.37 Aligned_cols=240 Identities=15% Similarity=0.129 Sum_probs=180.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
..+|-...-..+...+...|-...|..+|+++. .|..++.+|+..|+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-------------------------------mw~~vi~CY~~lg~~~ 441 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------------------------------MWDPVILCYLLLGQHG 441 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------------------------------HHHHHHHHHHHhcccc
Confidence 455656666778888999999999999998653 4677899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+|..+..+-.++ +|+...|..+.+.....--+++|.++.+..... .-..+.....+.++++++.+.|+
T Consensus 442 kaeei~~q~lek-----~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 442 KAEEINRQELEK-----DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred hHHHHHHHHhcC-----CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHH
Confidence 999999888774 588889998888887777788888888776432 11112222344788999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 410 (499)
.-.+.+. ....+|-....+..+.++++.|.+.|...... .|| ...||.+-.+|.+.++-.+|...+.+..+.. .-
T Consensus 510 ~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~ 585 (777)
T KOG1128|consen 510 RSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQ 585 (777)
T ss_pred HHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CC
Confidence 7666532 25677888888888899999999999888774 354 5689999999999999999999999988876 33
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 036198 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKLPYRKFDSYLMQLS 458 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 458 (499)
+...|...+-...+.|.+++|++.+.++.+.. ..-|......++....
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 55566677777788999999999998876432 1124444444444443
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1.3e-05 Score=78.32 Aligned_cols=222 Identities=13% Similarity=0.145 Sum_probs=180.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
.+|-...-..+...+.+.|-...|..+|++. ..|..+|.+|+..|+..+|..+..+..+. +|+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~l 459 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRL 459 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchh
Confidence 3444444567778889999999999999876 45667889999999999999999988884 799999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 389 (499)
|..+.+......-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. ..-..+|-.+-.+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 999999888888899999998876443 11122222334799999999999876643 2345688888888889
Q ss_pred cCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
.+++..|.+.|...... .| +...||.+-.+|.+.++-.+|...+++..+-+ .-+...|...+-...+.|.+++|.+
T Consensus 532 lek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 99999999999998765 44 56789999999999999999999999999887 4577788888888999999999999
Q ss_pred HHHHHHhh
Q 036198 469 LSDHMRKF 476 (499)
Q Consensus 469 ~~~~m~~~ 476 (499)
.+.++.+.
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 99988754
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00071 Score=68.82 Aligned_cols=289 Identities=14% Similarity=0.137 Sum_probs=168.8
Q ss_pred CCCCCHHHHHHHHHccCC-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCccc
Q 036198 76 GVPLTTDSVVGVLQRFQF-EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154 (499)
Q Consensus 76 ~~~~~~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 154 (499)
-..-+++++..+|..-.. .....-++....... ..|+..-+..+.++. ..+-..+..++++++.-.+.....
T Consensus 947 v~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E---~~dPe~vS~tVkAfM----tadLp~eLIELLEKIvL~~S~Fse 1019 (1666)
T KOG0985|consen 947 VERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE---TQDPEEVSVTVKAFM----TADLPNELIELLEKIVLDNSVFSE 1019 (1666)
T ss_pred HhccChHHHHHHHhccChHHHHHHHHHHHhcCCc---cCChHHHHHHHHHHH----hcCCcHHHHHHHHHHhcCCccccc
Confidence 345667777777744221 111222222222111 236677777888888 788888999999998766543322
Q ss_pred HHHHHHHHH-HHHHh-----hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHH--HHHHH
Q 036198 155 VDVLLMILK-QYTEK-----IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT--LEEMI 226 (499)
Q Consensus 155 ~~~~~~~l~-~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~--~~~m~ 226 (499)
...+..++- .-.+. ...--..|...--.+...+..++-+++|..+|++..- +....+.+...+ +++..
T Consensus 1020 ~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~----n~~A~~VLie~i~~ldRA~ 1095 (1666)
T KOG0985|consen 1020 NRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM----NVSAIQVLIENIGSLDRAY 1095 (1666)
T ss_pred chhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc----cHHHHHHHHHHhhhHHHHH
Confidence 222221111 00000 0000001111112234455667778888888887643 233333331111 11111
Q ss_pred HcCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 036198 227 QMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305 (499)
Q Consensus 227 ~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 305 (499)
+... --.+..|..+..+-.+.|.+.+|++-|-+. .|...|.-++....+.|.|++-.+.+...++..-.|
T Consensus 1096 efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1096 EFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 1100 114567888999988999998888877432 356788899999999999999888887777665555
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
... +.|+-+|++.++..+.+++. .-|+......+.+-|...+.++.|.-+|... .-|..|..
T Consensus 1167 ~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~ 1228 (1666)
T KOG0985|consen 1167 YID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLAS 1228 (1666)
T ss_pred cch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHH
Confidence 443 46888899998887766554 2367777777777788888888877776543 34555555
Q ss_pred HHHhcCCchHHHHHHHH
Q 036198 386 MYFELGEPDGAFETWHE 402 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~ 402 (499)
.+...|++..|.+.-++
T Consensus 1229 TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 56666666666554433
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.002 Score=70.14 Aligned_cols=279 Identities=11% Similarity=0.031 Sum_probs=173.5
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
+...+...|++++|...+++.....+.+. .+ ......+.+...+...|++++|...+++...
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-----------------~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTW-YY-----------------SRIVATSVLGEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCcc-HH-----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455678999999999887654211110 00 0112345666777889999999999988765
Q ss_pred cCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--c-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 263 KGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL--P-DVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 263 ~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
.......+. ..++..+...+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.
T Consensus 520 ~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 520 MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 321101111 234555666778899999999998876542 211 1 2233445556677789999999988876
Q ss_pred HhC--CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhH-----HHHHHHHHhcCCchHHHHHHHHH
Q 036198 334 GNK--GYPP--DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTY-----NMLISMYFELGEPDGAFETWHEM 403 (499)
Q Consensus 334 ~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~-----~~li~~~~~~~~~~~a~~~~~~m 403 (499)
... ...+ ....+..+...+...|++++|...+.+....... .....+ ...+..+...|+.+.|...+...
T Consensus 600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 679 (903)
T PRK04841 600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA 679 (903)
T ss_pred HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 542 1112 2334444556777899999999988887542110 111111 11224455678899998888775
Q ss_pred hHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 404 DKRGCAQDV---DTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 404 ~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
......... ..+..+..++...|+.++|...+.+.... |..++ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus 680 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 680 PKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 542211111 11345666778889999999998887643 33222 34566667888899999999999988877
Q ss_pred hcCh
Q 036198 476 FYNP 479 (499)
Q Consensus 476 ~~~~ 479 (499)
...+
T Consensus 760 la~~ 763 (903)
T PRK04841 760 LANR 763 (903)
T ss_pred HhCc
Confidence 5543
No 97
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00032 Score=60.62 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCcCHHhHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE-CFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
...-.-+-++|.-.|++.....-. ... ..|.......+-......++.+. ...+.+.+.......+......
T Consensus 41 ~e~d~y~~raylAlg~~~~~~~eI---~~~----~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~ 113 (299)
T KOG3081|consen 41 VELDVYMYRAYLALGQYQIVISEI---KEG----KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLL 113 (299)
T ss_pred hHHHHHHHHHHHHccccccccccc---ccc----cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 333344556666666654333221 111 12233333333333333344333 3334444544444444444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc--
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-- 390 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-- 390 (499)
-...|+..|++++|++.++... +......=+..+.+..+.+-|.+.++.|.+. .+..|.+.|..++.+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 5567899999999999887722 3334444445567888999999999999874 3667888777777653
Q ss_pred --CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHH
Q 036198 391 --GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIH 467 (499)
Q Consensus 391 --~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~ 467 (499)
+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++.+++... ++.+...++-+-...|.. +-..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 5688899999999875 5789999999999999999999999999999988755 677777776666666654 5567
Q ss_pred HHHHHHHhhcChhHH
Q 036198 468 KLSDHMRKFYNPVIA 482 (499)
Q Consensus 468 ~~~~~m~~~~~~~~~ 482 (499)
+.+.+++..++..+.
T Consensus 263 r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHhcCCcchH
Confidence 788888888777665
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.41 E-value=0.0025 Score=62.03 Aligned_cols=313 Identities=14% Similarity=0.086 Sum_probs=182.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|+-++|....+.-.+.. .-+.+.|+.+.-.+-...++++|++.|.....-.+.|
T Consensus 53 ~lg~~~ea~~~vr~glr~d------------------------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND------------------------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred cccchHHHHHHHHHHhccC------------------------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence 4677778888777766554 2466788888888878888999999998887765666
Q ss_pred hhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 036198 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278 (499)
Q Consensus 211 ~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 278 (499)
...|.-+ .......+.+. .+-....|..+..++.-.|+...|..+.++..+... ..|+...|...
T Consensus 109 ~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~s 185 (700)
T KOG1156|consen 109 LQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHS 185 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHH
Confidence 6666555 11122222221 111344566777777777888888888887776653 24555554433
Q ss_pred HH------HHHHcCCHHHHHHHHHHHHHcCCCcCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 279 IV------ALVQNDRMEECFSLLGHMINSGCLPDVSTY-KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 279 l~------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
.. .....|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..++..++..+ ||..-|.-.+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH
Confidence 22 334566677777666554433 2232222 233455667777777777777777763 555555444433
Q ss_pred HH-HcCCHHHHH-HHHH----------------------------------HHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 352 LC-DNKNGDEAL-RLYG----------------------------------RMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 352 ~~-~~g~~~~a~-~~~~----------------------------------~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
+. +-.+.-++. .+|. .+.+.|+++ ++..+...|-.-...+-
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHH
Confidence 32 222222222 3333 333334321 22222222222111111
Q ss_pred HHHHHHHHh----HCC----------CCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 036198 396 AFETWHEMD----KRG----------CAQDVDTYC--VMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYLMQLS 458 (499)
Q Consensus 396 a~~~~~~m~----~~~----------~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 458 (499)
.+++.-.+. ..| -+|....|. .++..+-..|+++.|..+++...++- |+ +..|..=.+.+.
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~k 416 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHH
Confidence 111111111 111 145555444 56777889999999999999988763 55 334545558889
Q ss_pred hcCCHHHHHHHHHHHHhhcCh
Q 036198 459 VIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~ 479 (499)
..|++++|..++++..+...+
T Consensus 417 H~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred hcCChHHHHHHHHHHHhccch
Confidence 999999999999999887655
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=7.8e-05 Score=66.66 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV---- 307 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---- 307 (499)
....+..+...+.+.|++++|...|+++...... .| ...++..+..++...|++++|...++++.+.. |+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 5667888889999999999999999999886521 11 12467888899999999999999999998763 322
Q ss_pred HhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 308 STYKEVLEGMCLA--------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 308 ~~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
.++..+..++... |+.++|.+.++.+.+.... +...+..+..... ... ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 1344444555544 7889999999998876322 2222222211110 000 000 11
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
...+...|.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455668888999999999988876521 223567888888899999999999988877654
No 100
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=0.00086 Score=62.19 Aligned_cols=214 Identities=9% Similarity=0.020 Sum_probs=153.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHhHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKAR-MVTEAADL 256 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~a~~~ 256 (499)
++..+-..+...++.++|+.+++++... .| +..+|+..-.++...| ++++++..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l------------------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL------------------------NPGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------------CchhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 4555555666778888888888877652 22 3445666666666667 57999999
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRM--EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
++++.+.. +-+..+|+.....+.+.|.. ++++.+++.+.+.. +-|..+|+...-++...|+++++++.+++++
T Consensus 95 ~~~~i~~n----pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 95 AEDVAEDN----PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHC----CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999876 34566777666666666653 67888888888765 4578888888888889999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHHc---CCH----HHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc----CCchHHHHHHHHH
Q 036198 335 NKGYPPDIVTYNCFLKVLCDN---KNG----DEALRLYGRMIEVGCWPSVQTYNMLISMYFEL----GEPDGAFETWHEM 403 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m 403 (499)
+.+.. +..+|+.....+.+. |.. +++.....+++... +-|...|+-+...+... +...+|.+++.+.
T Consensus 170 ~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 170 EEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 98765 677777776666554 222 45667776776654 24667888777777763 3446688888877
Q ss_pred hHCCCCCCHHHHHHHHHHHHh
Q 036198 404 DKRGCAQDVDTYCVMIDGLFD 424 (499)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~ 424 (499)
.+.+ ..+......|++.|+.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 6643 2366778888888875
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=0.00012 Score=63.12 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHH-HhcCC--chHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY-FELGE--PDGA 396 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 396 (499)
.++.+++...++...+.+. .+...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3334444444444433322 2444444444555555555555555554444321 1333334433332 33333 2445
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.+++++..+.+.. +...+..+...+...|++++|...++++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555544443211 3334444444444445555555555444443
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=3.9e-05 Score=73.11 Aligned_cols=226 Identities=14% Similarity=0.046 Sum_probs=173.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 320 (499)
..-+.+.|++.+|.-.|+...++. +-+...|.-|......+++-..|+..+.+..+.. +-|....-.|.-.|...
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhh
Confidence 344678899999999999999986 4578999999999999999999999999998874 44667777888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCC--------CHhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcChhhHHHHHHHHHhcC
Q 036198 321 GKVEEAYKFLEEMGNKGYPP--------DIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~ 391 (499)
|.-..|++.++..+...++- +...-.. ..+.....+....++|-++. ..+..+|..+...|--.|--.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999999876543110 0000000 11122223344555665554 4454578888888888889999
Q ss_pred CchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
++++|.+.|+..... +| |...||.|-..++...+.++|.+.|.+.++.. |+ ++....|.-+|...|.+++|.+.
T Consensus 445 efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999998875 44 67799999999999999999999999998764 44 44666777889999999999998
Q ss_pred HHHHHhhc
Q 036198 470 SDHMRKFY 477 (499)
Q Consensus 470 ~~~m~~~~ 477 (499)
|-......
T Consensus 521 lL~AL~mq 528 (579)
T KOG1125|consen 521 LLEALSMQ 528 (579)
T ss_pred HHHHHHhh
Confidence 87766543
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=0.00028 Score=73.04 Aligned_cols=172 Identities=13% Similarity=0.143 Sum_probs=114.9
Q ss_pred CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 173 TQP-EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 173 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
..| +...+..|+..+...|++++|.++.+...+..+-....|-.++. ++....+ . +......++.......++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~---~-~~~~lv~~l~~~~~~~~~~ 100 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRP---L-NDSNLLNLIDSFSQNLKWA 100 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcc---h-hhhhhhhhhhhcccccchh
Confidence 444 56789999999999999999999999665533333333333333 2222221 1 2222226666666666776
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
.+..+...|.+.+ -+..++..+..+|-+.|+.++|.++|+++.+.. +-|..+.|.+...|... ++++|.+++.
T Consensus 101 ~ve~~~~~i~~~~-----~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYG-----ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhh-----hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 6666666666654 345577778888888888888888888888876 55777788888888888 8888888877
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
+.... +...+++..+.++|.++...
T Consensus 174 KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 76554 44455666666666666553
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00022 Score=73.85 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG---------- 302 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------- 302 (499)
+...+..|+..+...+++++|.++.+...+... -....|-.+...+.+.++..++..+ .+...-
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P----~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHK----KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 567889999999999999999999998777642 2233333333366666665555544 222210
Q ss_pred --------CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 303 --------CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 303 --------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
..-+...+..+..+|-+.|+.++|..+++++.+... -|+.+.|.+...|+.. ++++|.+++.+...
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 001113334444555555666666666666655542 2555555555555555 66666655555543
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00089 Score=57.52 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=129.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH-HHHHHhcCCH
Q 036198 247 ARMVTEAADLFEFMRTKGSTI-SSPTAK-TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV-LEGMCLAGKV 323 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~g~~ 323 (499)
..+.++..+++.++....... ..++.. .|..++-+....|+.+.|...++++.+.- |...-...| .-.+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 456788888888887643211 334443 34556666777888888888888887662 333222212 2234556888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 403 (499)
++|.++++.+.+.+ +.|..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888876 346677777777777778888888887777764 4568888888888888888888888888888
Q ss_pred hHCCCCC-CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCC
Q 036198 404 DKRGCAQ-DVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKG 442 (499)
Q Consensus 404 ~~~~~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~ 442 (499)
.-. .| +...+..+...+...| +...+.+++.+.++..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 764 34 4445556666555443 4566777787777654
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.26 E-value=0.0066 Score=60.42 Aligned_cols=374 Identities=14% Similarity=0.071 Sum_probs=203.6
Q ss_pred CCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 036198 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF-VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188 (499)
Q Consensus 110 ~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~ 188 (499)
+.+-++.++..+...+.-.. ..++.+++ .++..+.+.-.+. ...+.....+..+.+.....+.-|...|..+--++.
T Consensus 257 ~w~~~~l~ka~l~~~~~~f~-~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~ 334 (799)
T KOG4162|consen 257 SWSLDPLTKARLYKGFALFL-PKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALS 334 (799)
T ss_pred ccccchhHHHHHhhcccccC-CCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 33446666666655544211 45666666 3333333322211 112334444445555555566678999999999999
Q ss_pred hCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCC-HHHHHHHHHHHH-hcCCHhHHH
Q 036198 189 KCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD-NFTYNTAIDTFC-KARMVTEAA 254 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~-~~~~~~li~~~~-~~g~~~~a~ 254 (499)
.+|+++.+.+.|++.....-.....|+.+ |..+++.-......|+ ...+-..-..|. +.|.+++++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegl 414 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGL 414 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHH
Confidence 99999999999999776544455555555 5666655544332343 333333333343 345566666
Q ss_pred HHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcC
Q 036198 255 DLFEFMRTKG-STISSPTAKTYAIMIVALVQND-----------RMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 255 ~~~~~m~~~~-~~~~~p~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g 321 (499)
+.-.+..... ..........|..+.-+|...- ...++++.+++..+.+ ..|+...| +---|+..+
T Consensus 415 dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R 492 (799)
T KOG4162|consen 415 DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQR 492 (799)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHH
Confidence 6555554411 0001122333444444433211 1334555555555443 12222222 222345556
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC---------------------------
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GC--------------------------- 373 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~--------------------------- 373 (499)
+++.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+...+. |.
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 66666666666665544445666666655555556665555554443221 10
Q ss_pred --------------------------------------------------------------------CcC------hhh
Q 036198 374 --------------------------------------------------------------------WPS------VQT 379 (499)
Q Consensus 374 --------------------------------------------------------------------~~~------~~~ 379 (499)
.|+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 000 001
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
|......+.+.+..++|...+.+.... ..-....|...-..+...|...+|.+.|......+. -+.....++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 123334445555555665555555443 122333444444556667788888888887776653 245677788888888
Q ss_pred cCCHHHHHH--HHHHHHhhcChhHHHHHHHHH
Q 036198 460 IGDLGAIHK--LSDHMRKFYNPVIARRLALNQ 489 (499)
Q Consensus 460 ~g~~~~a~~--~~~~m~~~~~~~~~~~~~~~~ 489 (499)
.|+..-|.. ++..+.+.++....-||.+..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 888877777 888888888877777766644
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0052 Score=59.24 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH--------HHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH--------EMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
+..+..++....+....-...+.-.++......|+++.|.+++. .+.+.+..|. +...++..+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCc
Confidence 34444444444432211223445566667778888888888888 4445444444 4556666666666666
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 430 EACFLLEEVVNK--GLKLPYRKFDS----YLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 430 ~a~~~~~~m~~~--~~~p~~~~~~~----ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
.|..++.+.... .-.+....... +..-=.+.|+.++|..+++++.+.++++.-
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence 666666555421 00111122222 223335668888888888888887776554
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00023 Score=61.50 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
|....+..+....+.|++..|...|++..... ++|..+|+.+.-+|.+.|+++.|..-|.+..+.. .-+...++.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nN 173 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANN 173 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhh
Confidence 55566667777888888888888888877764 6778888888888888888888888888877763 334566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
+.-.+.-.|+.+.|..++......+.. |...-..+..+....|++++|..+...-.
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 777777788888888888777665433 56666677777777888888877765543
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=0.0001 Score=59.95 Aligned_cols=95 Identities=6% Similarity=-0.047 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 4455666667777777777777766654 4456666667777777777777777777776653 3455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 036198 317 MCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~ 336 (499)
+...|++++|.+.|+...+.
T Consensus 102 l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766654
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.00095 Score=68.40 Aligned_cols=183 Identities=7% Similarity=0.017 Sum_probs=141.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
...++..+-.|.......|..++|+.+++...+.. +-+......+...+.+.+++++|+..+++..+.. +-+...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 45578899999999999999999999999999874 4456778888999999999999999999999874 445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 389 (499)
...+..++.+.|++++|..+|++....+. -+..++..+..++-..|+.++|...|+...+.. .+....|+.++.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~---- 230 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV---- 230 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH----
Confidence 77788889999999999999999998432 357889999999999999999999999988753 255566665443
Q ss_pred cCCchHHHHHHHHHhHC----CCCCCHHHHHHHHHHHHhC
Q 036198 390 LGEPDGAFETWHEMDKR----GCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~ 425 (499)
++..-..+++.+.-. |..........+|.-|.+.
T Consensus 231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 --DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred --HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 334445566665432 3334445566666666543
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00031 Score=60.70 Aligned_cols=159 Identities=10% Similarity=-0.039 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
..+-..+.-.|+-+....+........ +-|....+..+....+.|++..|...+++..... ++|...|+.+--+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~----~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY----PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC----cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHH
Confidence 445555666666666666666544432 3345555567777777777777777777776553 66777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
.+.|+.+.|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHH
Confidence 7777777777777776665332 555666676667777777777777777666542 35555666666667777777777
Q ss_pred HHHHHH
Q 036198 398 ETWHEM 403 (499)
Q Consensus 398 ~~~~~m 403 (499)
++...-
T Consensus 223 ~i~~~e 228 (257)
T COG5010 223 DIAVQE 228 (257)
T ss_pred hhcccc
Confidence 766543
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0078 Score=58.11 Aligned_cols=413 Identities=12% Similarity=0.097 Sum_probs=225.8
Q ss_pred ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCCCCCCHHH-----HHHHHHccC-CCh
Q 036198 22 RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDS-----VVGVLQRFQ-FEE 95 (499)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~~~~~-----~~~~l~~~~-~~~ 95 (499)
..+++..+.+....++. ..|.+...+..-+-++.+.+.+++||........... +...+...+ +..
T Consensus 24 ~~~e~e~a~k~~~Kil~--------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred cchHHHHHHHHHHHHHh--------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 55555556655554332 3345555566666677888999999854332221111 233332222 233
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-----hh
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-----IK 170 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~-----~~ 170 (499)
+-|+...+-... .|..+...-...|- +.|++++|..+|+++.+++...-+......++.+-... ..
T Consensus 96 Dealk~~~~~~~-----~~~~ll~L~AQvlY----rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLDR-----LDDKLLELRAQVLY----RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHHHHHHhcccc-----cchHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 455555542211 13334444455566 99999999999999988885433333333333322211 11
Q ss_pred cCCCCCHHHHHHHHHH---HHhCCChHHHHHHHHHhhc----CCCCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 036198 171 VKTQPEINALNLLLDA---LCKCGLVDYAETICKRVKN----KVKPNANTYNILGMQTLEEMIQMGHAPDNF-TYNTAID 242 (499)
Q Consensus 171 ~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~----~~~p~~~~~~~la~~~~~~m~~~g~~p~~~-~~~~li~ 242 (499)
....| ..+|..+.+. +...|++.+|+++++.... .+..+... +.++.-+.. .-.-+..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-------------eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-------------EEEIEEELNPIRVQLAY 232 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-------------hhhHHHHHHHHHHHHHH
Confidence 12222 3355555553 3457999999999988722 10000000 001111111 1123445
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHH----HHHHHHHHHHcCCHH----------------HHHHHH-------
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKT----YAIMIVALVQNDRME----------------ECFSLL------- 295 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~----------------~a~~~~------- 295 (499)
.+-..|+-++|..++....+.. .+|... -|.++..-....-++ .++.-+
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5677888888888888887775 233211 122221110000000 000000
Q ss_pred -------------------HHHHHcCCCcCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 296 -------------------GHMINSGCLPDVSTYKEVLEGMCLA--GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 296 -------------------~~m~~~~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
+.............+.+++..+.+. .....+.+++...-+....-...+.-.++.....
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 0000110011123444444443322 2456677777666554322234556667777889
Q ss_pred cCCHHHHHHHHH--------HHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCCCCHHHHHHHHH----
Q 036198 355 NKNGDEALRLYG--------RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMID---- 420 (499)
Q Consensus 355 ~g~~~~a~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~---- 420 (499)
.|+++.|.+++. .+.+.+..|. +...+...+.+.++.+.|..++.+.... .-.+.......++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 999999999999 5555554454 4456777778888888888888776542 11222233333333
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
.-.+.|+.++|..+++++.+.. ++|..+...++.+|++. |.+.|..+-..+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3346899999999999999875 46899999999999875 566777665554
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00015 Score=63.50 Aligned_cols=233 Identities=9% Similarity=0.104 Sum_probs=158.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 229 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
|+.....-+++++..+.+..++++|++++....++. +.+....+.+..+|-...++..|-..|+++... .|...
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~----p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~ 78 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS----PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE 78 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH
Confidence 344344457778888889999999999998887775 347778888888999999999999999999876 56666
Q ss_pred hHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 309 TYKEV-LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL--CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 309 ~~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
-|... ...+.+.+.+..|+.+...|... |+...-..-+.+- ...+++-.+..+.++.-..| +..+.+....
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 66543 35677888899999999888764 2322222222222 34677777887777765332 3344444444
Q ss_pred HHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-------------CCHH----
Q 036198 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-------------LPYR---- 448 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~---- 448 (499)
...+.|+++.|.+-|+...+.+---....|+.-+..| +.|+.+.|+++..++.+.|++ ||..
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 4567888899988888877653333455677666555 457888888888888877654 2221
Q ss_pred ----HHHHHH-------HHHHhcCCHHHHHHHHHHHH
Q 036198 449 ----KFDSYL-------MQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 449 ----~~~~ll-------~~~~~~g~~~~a~~~~~~m~ 474 (499)
.-..++ ..+.+.|+.+.|.+.+-.|.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 112233 33456788888888887775
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.16 E-value=0.00017 Score=62.04 Aligned_cols=119 Identities=5% Similarity=0.096 Sum_probs=73.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HhcCC--H
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM-CLAGK--V 323 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~--~ 323 (499)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~----P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCc
Confidence 445566666666665553 4566667777777777777777777777666653 33455555555543 45555 3
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
++|.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777766666433 5566666666666677777777777766654
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.0015 Score=61.55 Aligned_cols=185 Identities=16% Similarity=0.135 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
.|+...+...+.+......-..+..++....+. .-...-|..- -.+...|++++|+..++.+...- +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455555555555544433333333333222221 1122223322 33556778888888888877653 3355566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
...+.+.++.++|.+.++.+.... |+ ....-.+..++.+.|+..+|..+++..... .+-|+..|..|.++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCc
Confidence 677888888888888888887743 55 445556777788888888888888877655 24467788888888888887
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 428 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
..++..-..+ +|...|+++.|...+....+...
T Consensus 424 ~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 424 RAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred hHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhcc
Confidence 7776655443 35556777777777777666553
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.14 E-value=0.0079 Score=65.47 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=152.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---Cc--CHHhH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPT----AKTYAIMIVALVQNDRMEECFSLLGHMINSGC---LP--DVSTY 310 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~ 310 (499)
+...+...|++++|...+++..... ...+ ....+.+...+...|++++|...+.+.....- .+ ...++
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 3355668999999999999887642 1112 23445666677889999999999988864311 11 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCc--Chhh
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNK----GYP--P-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--GCWP--SVQT 379 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~--~~~~ 379 (499)
..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 55667788999999999998875442 221 1 2233445556677789999999999887642 1112 2334
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCC--CCCCHH--HH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRG--CAQDVD--TY--CVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKF 450 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~ 450 (499)
+..+...+...|+.+.|.+.+....... ...... .. ...+..+...|+.+.|..++........... ...+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 5556667888999999999998875421 111111 10 1122444568999999999877554221111 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+..++...|+.++|...+++..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667888999999999999998775
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.11 E-value=0.0099 Score=56.84 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLE 436 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 436 (499)
.+.....++++...-..--..+|..+|+.-.+...+..|..+|.+.++.+..+ ++..+++++.-+|. ++.+-|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555666666543222234578888999889999999999999999987776 88889999998886 77788999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 437 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
--+++ +.-++.--...++-+...++-..+..+|++....
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 65544 1234445556677777778877888888887766
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.6e-06 Score=48.73 Aligned_cols=31 Identities=39% Similarity=0.685 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 036198 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375 (499)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 375 (499)
|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3344444444444444444444444333333
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.0031 Score=60.62 Aligned_cols=155 Identities=19% Similarity=0.108 Sum_probs=106.3
Q ss_pred CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-------C-------------CCChhhHHHHHHHHHHHHHHcCCC
Q 036198 173 TQP-EINALNLLLDALCKCGLVDYAETICKRVKNK-------V-------------KPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 173 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~-------------~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
+.| +..+.-+|.-.|...|.-..|..+++..... . .++...+.-+...+++.....+..
T Consensus 348 LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 348 LDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 345 5678888888899999999999998886321 0 022222333344444555555656
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTY 310 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~ 310 (499)
+|..+...|.-.|--.|++++|.+.|+..+... +-|...||-|...++...+.++|...|++.++. .|+ +.+.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~R 501 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK----PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVR 501 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeee
Confidence 777777778778888888888888888877754 346677888888888888888888888888776 344 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
..|.-.|...|.+.+|.+.|-..
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 44555677788888887776553
No 120
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=7.2e-06 Score=48.26 Aligned_cols=33 Identities=39% Similarity=0.676 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 446 (499)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.0015 Score=65.15 Aligned_cols=220 Identities=16% Similarity=0.113 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+..+|..+.++|.+..++|-|.-.+-.|.+-- ....+++..+.|- .+=..+.-.....|.+++|+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------gaRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~ 821 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------GARALRRAQQNGE----EDEAKVAVLAIELGMLEEALI 821 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----------hHHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHH
Confidence 34589999999999999999999888887510 1223334433332 222334444566788899998
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+|.+....+ .|=+.|-..|.|++|+++-+.=-+. --..||..-..-+-..++.+.|++.|++...
T Consensus 822 lYr~ckR~D------------LlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 822 LYRQCKRYD------------LLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHHHH------------HHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 888776533 3445667788888888776543222 1234555555556666777777777764321
Q ss_pred C----------C---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 336 K----------G---------YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 336 ~----------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
. . -..|...|.--...+-..|+.+.|+.+|..... |-++++..|-+|+.++|
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHH
Confidence 1 0 011333444444455556777777776665432 34455555666777777
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
-++-++- -|....-.+.+.|-..|++.+|..+|.+..
T Consensus 958 a~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 958 ARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666552 244445556677777777777777766543
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.0013 Score=67.48 Aligned_cols=186 Identities=11% Similarity=0.008 Sum_probs=144.8
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD-NFTYNTAIDTFCKA 247 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 247 (499)
..+..+.+...+-.|.......|.+++|..+++...+ +.|| ......+...+.+.
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------------~~Pd~~~a~~~~a~~L~~~ 133 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------------RFPDSSEAFILMLRGVKRQ 133 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------------hCCCcHHHHHHHHHHHHHh
Confidence 4456677789999999999999999999999998876 4565 55778888999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
+++++|+..+++..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+-.++...|+.++|.
T Consensus 134 ~~~eeA~~~~~~~l~~~----p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 134 QGIEAGRAEIELYFSGG----SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred ccHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999986 4567788888889999999999999999999843 455889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCcChhhHHHHHHHHHhc
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~ 390 (499)
..|+...+.. .+....|+..+. +...-...++++.-.+ ..........+|.-|.+.
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 209 DVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 9999987762 345556655443 3344556666665433 222344555666666654
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.006 Score=58.21 Aligned_cols=168 Identities=16% Similarity=0.116 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH-------HHH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY-------NML 383 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------~~l 383 (499)
..+.++..+..+++.|.+-+....+.. -+..-++..-.+|...|.+..+...-....+.|.. ...-| ..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 345566667777788888777776654 24445555666777777777766666655554421 11122 223
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCCCCHHH-------------------------HHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDT-------------------------YCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
-.+|.+.++++.|...|.+.......|+... ...-...+.+.|++..|...+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3355556677777777776554333333211 011133456778888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 439 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
++.. +-|...|..-.-+|.+.|.+..|.+=.+.-.+..+..+-
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 8877 347778888888888888888888777777666555443
No 124
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.07 E-value=6.6e-05 Score=71.26 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=90.2
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 302 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
+.+.+......+++.+....+.+.+..++...... ....-..|..+++..|.+.|..+.+..++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44566677777777777777778888777776654 2222234556788888888888888888887777788888888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 425 (499)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777666666667777666666655
No 125
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0082 Score=54.26 Aligned_cols=344 Identities=11% Similarity=0.058 Sum_probs=169.3
Q ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHH----HHHHHHh--hhcCCCCCHHHHHHHHHHHHhC
Q 036198 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI----LKQYTEK--IKVKTQPEINALNLLLDALCKC 190 (499)
Q Consensus 117 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~----l~~~~~~--~~~~~~~~~~~~~~li~~~~~~ 190 (499)
..+..|..|.- +.|++++|...+.-.....-.+........+ +..|.+. .....+.+.-.-..+++...+.
T Consensus 58 ~~~lWia~C~f---hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYF---HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHH---hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 34444444442 6788888888888766654222222222211 2223222 2233344444555566666677
Q ss_pred CChHHHHHHHHHhhcC----CCCChhhHHHH----HHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHhHHHHHHHHHH
Q 036198 191 GLVDYAETICKRVKNK----VKPNANTYNIL----GMQTLEEMIQMGHAPDNFTYNTAI-DTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~----~~p~~~~~~~l----a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~ 261 (499)
|+-++-..+...+... .+.-...|... |.+++.+....+ |+-...|..+ -+|.+..-++-+.+++.-..
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 8877776666665542 11111222222 888888777643 4555555555 45567777888888888877
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHcCC------------CcC-----HHhH
Q 036198 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM--------------INSGC------------LPD-----VSTY 310 (499)
Q Consensus 262 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m--------------~~~~~------------~~~-----~~~~ 310 (499)
+.- +.+..+.|.......+.=.-..|.+-...+ .++++ -|. +..-
T Consensus 213 ~q~----pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEAR 288 (557)
T KOG3785|consen 213 RQF----PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEAR 288 (557)
T ss_pred HhC----CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhh
Confidence 763 334455554444333321111122222222 22211 000 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCcCh------
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK-------NGDEALRLYGRMIEVGCWPSV------ 377 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~------ 377 (499)
-.|+--|.+.+++.+|..+.+++.-. .|-......+. ++..| ....|.+.|+-.-+.+..-|.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 12333467788888888877665421 11111111111 12222 234455555544333322111
Q ss_pred --------------hhH---------------HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHH-HHHHHHHhCCC
Q 036198 378 --------------QTY---------------NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC-VMIDGLFDCSK 427 (499)
Q Consensus 378 --------------~~~---------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~ 427 (499)
.+| -.+.++++..|++.+|+++|-.+....++ |..+|. .+.++|.+.+.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 111 23455666667777777777666544333 444554 34456667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 428 VEEACFLLEEVVNKGLKLPYRKF-DSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 428 ~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
++.|+.++-.+.. +-+..+. ..+.+-|.+.+.+=-|-+.|+.+....
T Consensus 444 P~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred chHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 7777666544422 1222232 233356667777666666666665543
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.017 Score=59.34 Aligned_cols=248 Identities=15% Similarity=0.084 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
....|..+..+-.+.|.+.+|.+-|-+. -|+..|..+++.+.+.|.|++-.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika----------------------------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA----------------------------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc----------------------------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 3457788888888888888887766433 267788888999999999999888
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.+...++.. ..|.+. +.+|-+|++.+++.+.+..+ ..||......+.+-|...|.++.|.-+|.....
T Consensus 1155 yL~MaRkk~---~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1155 YLLMARKKV---REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred HHHHHHHhh---cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 888777766 345443 46788888888877665544 236666666666666666666666655543321
Q ss_pred C--------------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 336 K--------------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 336 ~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
. .-..+..+|.-+..+|...+.+.-| +|...++.....-..-++.-|-..|-+++
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHH
Confidence 0 0012344555555555444443322 23222333344455677777888888887
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
...+++...... +.....|+.+.-.|++- ++++..+-++-.-. ....-.+++|+-...-|.+..-++.+-.+
T Consensus 1298 lIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1298 LISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777776543221 12334566666666553 33444333332211 11222455555555555555555554444
Q ss_pred h
Q 036198 476 F 476 (499)
Q Consensus 476 ~ 476 (499)
.
T Consensus 1370 y 1370 (1666)
T KOG0985|consen 1370 Y 1370 (1666)
T ss_pred h
Confidence 3
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.05 E-value=0.0043 Score=61.27 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
.+.+...+.+|.+|+.+++.+.++. .-..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+
T Consensus 738 aieaai~akew~kai~ildniqdqk-----~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK-----TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc-----cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc
Confidence 4455556667777777777666654 12334556666777777777777776442 134445667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 399 (499)
.|+|+.|.++-.+.. |.......|-+-..-+-+.|++.+|+++|-.+.+ |+. .|..|-+.|..+...++
T Consensus 804 ~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHH
Confidence 777777777655543 3333445555555555666666666666543321 332 34455555555555554
Q ss_pred HHH
Q 036198 400 WHE 402 (499)
Q Consensus 400 ~~~ 402 (499)
..+
T Consensus 873 v~k 875 (1636)
T KOG3616|consen 873 VEK 875 (1636)
T ss_pred HHH
Confidence 443
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.0045 Score=61.97 Aligned_cols=301 Identities=13% Similarity=0.101 Sum_probs=152.9
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|++-.+.+. +...|..+.+.|. +.++++-|.-.+-+|..... .++..+... .|
T Consensus 745 D~AfksI~~Ik-------S~~vW~nmA~McV----kT~RLDVAkVClGhm~~aRg-----------aRAlR~a~q---~~ 799 (1416)
T KOG3617|consen 745 DAAFKSIQFIK-------SDSVWDNMASMCV----KTRRLDVAKVCLGHMKNARG-----------ARALRRAQQ---NG 799 (1416)
T ss_pred HHHHHHHHHHh-------hhHHHHHHHHHhh----hhccccHHHHhhhhhhhhhh-----------HHHHHHHHh---CC
Confidence 44555554443 6688999999999 89999999988888875431 112111111 12
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+ ..=.-+.-.....|.+++|+.+|++-++ |..|=..|-..|.|++|.+
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------------------------------~DLlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR-------------------------------YDLLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------------------------------HHHHHHHHHhcccHHHHHH
Confidence 1 2222222334567888999999887664 2223344455566666655
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHcC---------CCcCHHhHHHHHHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM----------INSG---------CLPDVSTYKEVLEG 316 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m----------~~~~---------~~~~~~~~~~ll~~ 316 (499)
+-+.--... =-.||......+-..++.+.|++.|++. .... -..|...|.--..-
T Consensus 848 iAE~~DRiH------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY 921 (1416)
T KOG3617|consen 848 IAETKDRIH------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY 921 (1416)
T ss_pred HHhhcccee------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH
Confidence 544322211 1123433444444455555555555432 1110 01122222222233
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--------------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 036198 317 MCLAGKVEEAYKFLEEMGNKG--------------------YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~--------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 376 (499)
+-..|+.|.|+.+|......- -.-|....-.+...|-..|++.+|...|-+..
T Consensus 922 lES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq------- 994 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ------- 994 (1416)
T ss_pred HhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------
Confidence 334566666666665443210 01133444455555666666666666555432
Q ss_pred hhhHHHHHHHHHhcC---------------CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-----
Q 036198 377 VQTYNMLISMYFELG---------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE----- 436 (499)
Q Consensus 377 ~~~~~~li~~~~~~~---------------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~----- 436 (499)
+|...|+.|-.++ +.-.|-++|++. |. -+...+..|-++|.+.+|+++.-
T Consensus 995 --afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf 1064 (1416)
T KOG3617|consen 995 --AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQF 1064 (1416)
T ss_pred --HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhccc
Confidence 2222222222111 111222222221 11 12334455667777777766532
Q ss_pred ---HHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 437 ---EVVNK--GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 437 ---~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
++... ...-|+...+.-.+-++...++++|..++-..+++
T Consensus 1065 ~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1065 SALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 12222 33356777777778888889999998888777664
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0088 Score=56.54 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=85.6
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCC
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGK 322 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~ 322 (499)
+...|++++|+..++.+...- +-|...+......+.+.++..+|.+.++.+... .|+ ....-.+..+|.+.|+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~----P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ----PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334567777777777766653 345555566666677777777777777777665 344 3444455566777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
+.+|..+++...... +-|+..|..|..+|...|+..++..-..+ +|...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHH
Confidence 777777777665553 33666777777777777766666544433 33445666666666666
Q ss_pred HhHC
Q 036198 403 MDKR 406 (499)
Q Consensus 403 m~~~ 406 (499)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 5544
No 130
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=9.3e-05 Score=70.28 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=106.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 036198 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307 (499)
Q Consensus 228 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 307 (499)
.+.+.+......+++.+....+++.+..++.+....... ...-..|.+++++.|...|..+.++.++..=...|+-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~-~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC-SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc-ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 345567888888899999999999999999988876321 2222345679999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 355 (499)
.+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988887777778887777777766
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=1.1e-05 Score=47.06 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 445 (499)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 132
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.02 E-value=0.01 Score=53.52 Aligned_cols=305 Identities=11% Similarity=0.041 Sum_probs=208.7
Q ss_pred HHHHHHHHhccCCCchHHHHHhhC--CCCCCHHHHHHHHHccC-----CChHHHHHHHHHhhcCCCCCCCHHHHH-HHHH
Q 036198 52 AKLYEAIIDNSNAYDNMEKALDSL--GVPLTTDSVVGVLQRFQ-----FEEKIAFRFFMWAGHQDNYAHEPLAYN-LMID 123 (499)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~al~~~--~~~~~~~~~~~~l~~~~-----~~~~~a~~~f~~~~~~~~~~~~~~~~~-~li~ 123 (499)
..-.-.+-+.+...+.+.+||..+ .+..+|+.+..++++.. ...+.|+.-+.... ..+||-..-. .-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhch
Confidence 344556677777888999999987 57788998888887631 12234555555442 2345533221 1234
Q ss_pred HHhcchhhhhhHHHHHHHHHHHHHcCCCcccH-HHHHHHHHHHHHhhhcCCCCCHH--HHHHHHHHHHhCCChHHHHHHH
Q 036198 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV-DVLLMILKQYTEKIKVKTQPEIN--ALNLLLDALCKCGLVDYAETIC 200 (499)
Q Consensus 124 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 200 (499)
.+. +.|.++.|..=|+............ +....+ .+... .....+..+.-.|+...|++..
T Consensus 115 vll----K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl------------~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 115 VLL----KQGELEQAEADFDQVLQHEPSNGLVLEAQSKL------------ALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhh----hcccHHHHHHHHHHHHhcCCCcchhHHHHHHH------------HhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 566 9999999999999998877422111 111111 11111 2234455566678889998888
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 036198 201 KRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280 (499)
Q Consensus 201 ~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~ 280 (499)
+.+.+- .+-|+..+..-..+|...|++..|+.=++...+.. ..+..++--+-.
T Consensus 179 ~~llEi-----------------------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs----~DnTe~~ykis~ 231 (504)
T KOG0624|consen 179 THLLEI-----------------------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS----QDNTEGHYKISQ 231 (504)
T ss_pred HHHHhc-----------------------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc----ccchHHHHHHHH
Confidence 887662 22377888888999999999999998887776653 457777778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---h
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVST----YKEV---------LEGMCLAGKVEEAYKFLEEMGNKGYPPDIV---T 344 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~ 344 (499)
.+...|+.+.++...++..+. .||-.. |..+ +......++|.++.+-.+...+........ .
T Consensus 232 L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~ 309 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNG 309 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeee
Confidence 888999999999999888876 355432 2111 233456678888888888877764332223 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+..+..++...|++.+|++.-.+..+. .|| +.++.--..+|.-..+++.|+.-|+...+.
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 445667777888999999999988874 355 788888888998888999999999888775
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.01 E-value=0.0006 Score=55.44 Aligned_cols=90 Identities=10% Similarity=-0.095 Sum_probs=37.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 428 (499)
...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++...|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333344444444444444444332 1233344444444444444444444444444331 12333444444444444444
Q ss_pred HHHHHHHHHHHH
Q 036198 429 EEACFLLEEVVN 440 (499)
Q Consensus 429 ~~a~~~~~~m~~ 440 (499)
++|...++...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.023 Score=57.65 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
|..|...+-..|. ..++.++|..+|++..... |+..-...+..+|.+-+++
T Consensus 76 D~~tLq~l~~~y~----d~~~~d~~~~~Ye~~~~~~-------------------------P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 76 DDLTLQFLQNVYR----DLGKLDEAVHLYERANQKY-------------------------PSEELLYHLFMAYVREKSY 126 (932)
T ss_pred chHHHHHHHHHHH----HHhhhhHHHHHHHHHHhhC-------------------------CcHHHHHHHHHHHHHHHHH
Confidence 6777777777777 8888888888888887665 4544555555566665555
Q ss_pred HH----HHHHHHHhhcC---------------CCCChh---hHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCH
Q 036198 194 DY----AETICKRVKNK---------------VKPNAN---TYNILGMQTLEEMIQMG-HAPDNFTYNTAIDTFCKARMV 250 (499)
Q Consensus 194 ~~----A~~~~~~m~~~---------------~~p~~~---~~~~la~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~ 250 (499)
.+ |.++++...++ ..|+.. .+-.+|.+..+.+.+.+ .--+..-...-...+-..|++
T Consensus 127 k~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 127 KKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 43 33444433221 011111 11111667777776654 222333333444556677888
Q ss_pred hHHHHHHH-HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036198 251 TEAADLFE-FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302 (499)
Q Consensus 251 ~~a~~~~~-~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 302 (499)
++|++++. ...+.- ...+...-+.-+..+...++|.+..++-.++...|
T Consensus 207 ~eal~~l~~~la~~l---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 207 QEALEFLAITLAEKL---TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 99998884 333332 33445555666777777888888888887777765
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.0005 Score=55.32 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
...+...+...|++++|...|+.+.+.+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3333344444444444444444444332 2233444444444444444444444444443332 1133334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 036198 355 NKNGDEALRLYGRMIE 370 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~ 370 (499)
.|+++.|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.00 E-value=0.00083 Score=66.02 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=83.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
+.+.....+|.+|+.+++.++..+. -..-|..+...|+..|+++.|+++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4445556677777777777666532 2334556666777777777777776442 2334456667777777
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH---------H-HHCCC-----------CCC--HHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE---------V-VNKGL-----------KLP--YRKF 450 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---------m-~~~~~-----------~p~--~~~~ 450 (499)
+.|.++-.+... .......|-+-..-+-.+|++.+|.+++-. | .+.|. .|+ ..|.
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 777666554422 223333444433334444444444333210 0 01111 122 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+..-|-..|++..|++-|-+..+.
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhH
Confidence 67777788889999888877666543
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00075 Score=54.28 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+......+...+...|++++|.+.|+.....+ +.+...+..+...+...|++++|...++...+.+ +.+...+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 44556777888999999999999999998875 4578889999999999999999999999988775 556777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (499)
+...+...|++++|...|+...+.. |+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 8889999999999999999988763 4444433
No 138
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.91 E-value=0.00016 Score=53.86 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=19.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CcChhhHHHHHHHHHh
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGC-WPSVQTYNMLISMYFE 389 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~ 389 (499)
|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3333334444444444444444444 4444455444444443
No 139
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.024 Score=54.32 Aligned_cols=212 Identities=13% Similarity=0.084 Sum_probs=133.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH----
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV---- 313 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---- 313 (499)
..+.++.-+..+++.|++-+....+.. -+..-++..-.+|...|.+.++...-++..+.|.. ...-|+.+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-----~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-----TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-----hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 456677777788888888888877653 24455566667788888877777776666665522 22233332
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh-------------------------HHHHHHHHHHcCCHHHHHHHH
Q 036198 314 ---LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT-------------------------YNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 314 ---l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~ 365 (499)
-.+|.+.++++.|...|.+.....-.|+... -..-...+.+.|++..|...|
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3356666778888888877654433333211 111134456778888888888
Q ss_pred HHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 036198 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 366 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 445 (499)
.++++.. +-|...|+...-+|.+.|.+..|+.-.+...+.. ++....|..=..++....++++|.+.|.+.++.. |
T Consensus 382 teAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p 457 (539)
T KOG0548|consen 382 TEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--P 457 (539)
T ss_pred HHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--c
Confidence 8888765 3567788888888888888888887777666651 2233344444445555667888888888777665 4
Q ss_pred CHHHHHHHHHHHHh
Q 036198 446 PYRKFDSYLMQLSV 459 (499)
Q Consensus 446 ~~~~~~~ll~~~~~ 459 (499)
+..-+...+.-|..
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444333333333
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.013 Score=50.91 Aligned_cols=166 Identities=15% Similarity=0.153 Sum_probs=98.1
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 036198 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306 (499)
Q Consensus 227 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 306 (499)
......+......-...|++.|++++|++..+.. -+......=...+.+..+++-|.+.+++|.+. .+
T Consensus 101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred hhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3333334344444456677777777777776651 13344444444555666777777777777764 35
Q ss_pred HHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 307 VSTYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 307 ~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
..|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...... .+..+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHH
Confidence 5666656555543 34567777777777654 456777777777777777777777777777766542 34455555
Q ss_pred HHHHHHhcCCch-HHHHHHHHHhHC
Q 036198 383 LISMYFELGEPD-GAFETWHEMDKR 406 (499)
Q Consensus 383 li~~~~~~~~~~-~a~~~~~~m~~~ 406 (499)
++.+-...|... ...+.+..++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhc
Confidence 555444555443 334455555443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.0012 Score=53.92 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH--HhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV--STYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l 313 (499)
.|..++..+ ..++...+...++.+.+.... .+......-.+...+...|++++|...|+........++. ...-.+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 366667777777777665421 0111223333445666677777777777777665422211 122334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
...+...|++++|+..++...... .....+......+.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666777777777765533322 2334455566666677777777766654
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.013 Score=50.55 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=106.9
Q ss_pred CCCCHH-HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 173 TQPEIN-ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 173 ~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
..++.. .|.-++-+....|+.+.|...++.+..++ |. +..+--.-...+--.|.++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~----------------------S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG----------------------SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC----------------------ChhHHHHHHHHHHHhhchh
Confidence 445543 56677777778888888888888776643 11 1111111112233457788
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+|+++++.+.+.+ +.|..++---+...-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-.++
T Consensus 104 ~A~e~y~~lL~dd----pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 104 EAIEYYESLLEDD----PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hHHHHHHHHhccC----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 8888888887775 446666666666666677767777777777654 45677778888888888888888888887
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNK---NGDEALRLYGRMIEVG 372 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~ 372 (499)
++.-..+ .+...+..+...+.-.| +.+.+.+.|.+..+..
T Consensus 179 E~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7766532 23344444444444333 4455667777766643
No 143
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.86 E-value=0.024 Score=58.22 Aligned_cols=299 Identities=12% Similarity=0.037 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH--------------HHHHHHHHHHcCCCCCHHHHHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------------GMQTLEEMIQMGHAPDNFTYNTAI 241 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l--------------a~~~~~~m~~~g~~p~~~~~~~li 241 (499)
+...+....+.|++..+++.|..+.-...+.-+.-...+|-+ +..-|+...+..+. |...|..++
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLG 603 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLG 603 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHH
Confidence 456788888899999999999888444433322222223322 44555555554443 788999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHc------CCCcCHHhHHHH
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI--VALVQNDRMEECFSLLGHMINS------GCLPDVSTYKEV 313 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~l 313 (499)
.+|..+|.+..|+++|.+...-. |+ .+|...- ..-+..|.+.++++.+...... +..--..++-.+
T Consensus 604 eAY~~sGry~~AlKvF~kAs~Lr-----P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLR-----PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcC-----cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999998887643 43 2333222 2345678888888888777643 111112222222
Q ss_pred HHHHHhcCCHHHHHHHHH-------HHHhCCCCCCHhhHHHHHHHH-----------------------HHcCCH---H-
Q 036198 314 LEGMCLAGKVEEAYKFLE-------EMGNKGYPPDIVTYNCFLKVL-----------------------CDNKNG---D- 359 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~-------~m~~~~~~p~~~~~~~li~~~-----------------------~~~g~~---~- 359 (499)
...+...|-..+|..+++ -...+....+...|-.+-++| -..+.. |
T Consensus 678 akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 678 AKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence 222333332222332222 222221111222222222221 111111 1
Q ss_pred --HHHHHHHHHHHCCCCcChhhHHHHHHHHHh----cC----CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 360 --EALRLYGRMIEVGCWPSVQTYNMLISMYFE----LG----EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 360 --~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
-+.+.+-.-. ....+..+|..|...|.+ .+ +...|...++...+.. .-+..+|+.|--. ...|.+.
T Consensus 758 l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva 833 (1238)
T KOG1127|consen 758 LFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVA 833 (1238)
T ss_pred HHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhh
Confidence 0001110000 111233444444444433 12 2335677777665531 2245556655444 5567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
-|...|-+-.... +-...+|..+.-.|.+..+++.|...|.+.+...|.....+.+
T Consensus 834 ~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 834 CAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred hhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 7777666555443 3356688888888899999999999999998887777665554
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.0013 Score=53.57 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc--ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH--HHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP--SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV--DTYCVMI 419 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li 419 (499)
.|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+...+....|+. ...-.+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3667777777777776643111 1122333445666777777777777777765422221 2333455
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
..+...|++++|+..++...... .....+....+.|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66667777777777776533322 2344555666777777777777777764
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00033 Score=52.17 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDCS--------KVEEACFLLEEVVNKGLKLPYRKFD 451 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~ 451 (499)
...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+++.++++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4556666677999999999999999999 899999999999988642 3456788999999999999999999
Q ss_pred HHHHHHHhc
Q 036198 452 SYLMQLSVI 460 (499)
Q Consensus 452 ~ll~~~~~~ 460 (499)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999888653
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00083 Score=63.63 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 259 (499)
-.+|+..+...++++.|.++|+++.+. .|+ ....+++.+...++-.+|.+++++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~------------------------~pe--v~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER------------------------DPE--VAVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc------------------------CCc--HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345556666667777777777777652 133 334466666667777777777777
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 260 m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
..+.. +-+......-...+.+.++++.|+.+.+++.+.. +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 226 aL~~~----p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 226 ALKEN----PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77653 3456666666667777777777777777777652 2334477777777777777777777776653
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00089 Score=63.43 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.|++.+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555555555555555542 22 22334444444555555555555555332 123334444444455555
Q ss_pred CchHHHHHHHHHhHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDV-DTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
+.+.|.++.+++.+. .|+. .+|..|..+|...|++++|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555443 2322 35555555555555555555555443
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.1e-05 Score=43.09 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 036198 346 NCFLKVLCDNKNGDEALRLYGRM 368 (499)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m 368 (499)
+++|++|++.|++++|.++|++|
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 33333333333333333333333
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=5.3e-05 Score=43.03 Aligned_cols=29 Identities=38% Similarity=0.828 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 337 (499)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.0017 Score=50.72 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK--LPYRKFDSYLM 455 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~ 455 (499)
+..+...+.+.|++++|.+.+..+.+... ......+..+..++.+.|++++|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666654311 011234445566666666666666666666554211 12344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 456 QLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 456 ~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
++.+.|+.++|.+.++++.+.++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 6666666666666666666665553
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.0014 Score=59.89 Aligned_cols=133 Identities=16% Similarity=0.266 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. ...+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56666666666666777777777766432 1222333322222 12234555577777766554 344555666666666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
...|+.+.|..+|++.... +.++ ...|..+++-=.+.|+++.+.++.+++.+.++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6777777777777766644 2222 236666666666777777777777777776655
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.64 E-value=0.0015 Score=55.21 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCC
Q 036198 113 HEPLAYNLMIDILSST-KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG 191 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g 191 (499)
.|..+|..++..+... ..+.|..+-...-++.|.+-| +.-|..+|+.|++.+=+ |
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-----------------------v~kDL~~Y~~LLDvFPK-g 100 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-----------------------VEKDLEVYKALLDVFPK-G 100 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-----------------------CcccHHHHHHHHHhCCC-C
Confidence 4788899999988853 347889999889999998877 67899999999999976 4
Q ss_pred ChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 036198 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV-TEAADLFEFMR 261 (499)
Q Consensus 192 ~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 261 (499)
.+- -..+|..+--..+... ..+.+++++|...|+-||..++..+++.+++.+.. .+..++.-.|.
T Consensus 101 ~fv-p~n~fQ~~F~hyp~Qq----~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 101 KFV-PRNFFQAEFMHYPRQQ----ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred Ccc-cccHHHHHhccCcHHH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 332 2223333221111111 11888999999999999999999999999887763 33444444443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.0031 Score=49.19 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l 313 (499)
++..+...+.+.|++++|.+.|+.+.+.... .......+..+...+.+.|++++|.+.|+.+....- ......+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444555556666666666666666554311 011133444555566666666666666666554310 1112344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555566666666666655554
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0018 Score=47.78 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 344555555666666666666665543 2233455555555566666666666666655543 22334455555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 036198 318 CLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~ 335 (499)
...|+++.|...+....+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 555666666555555443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.0015 Score=48.23 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 461 (499)
.+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++....... .+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence 34444445555555555555554431 11223444445555555555555555555554432 23345555555555566
Q ss_pred CHHHHHHHHHHHHhh
Q 036198 462 DLGAIHKLSDHMRKF 476 (499)
Q Consensus 462 ~~~~a~~~~~~m~~~ 476 (499)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666655555443
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.53 E-value=0.0027 Score=53.65 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc----------------CCHHHHHH
Q 036198 270 PTAKTYAIMIVALVQ-----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA----------------GKVEEAYK 328 (499)
Q Consensus 270 p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~a~~ 328 (499)
.+-.+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355666666666654 355666666667777777777777777777665431 12334444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHH
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVL 352 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~ 352 (499)
++++|+..|+-||..++..+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHh
Confidence 445555555555555555444444
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0045 Score=56.66 Aligned_cols=144 Identities=11% Similarity=0.161 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA-LVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
.+|..+|+..-+.+..+.|..+|.+..+.+ ..+...|-..... |...++.+.|..+|+...+. +..+...+..-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 467888888888888999999999998654 2233344333333 23356677799999988876 45677778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDI---VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
++.+.+.|+.+.|..+|+..... +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+...+..+++-
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 88888999999999999988766 33222 47888888888889999999998888774 3444444444443
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.41 E-value=0.048 Score=48.64 Aligned_cols=182 Identities=8% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-HhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV-STY---KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
...+-.....+...|++++|.+.|+++...- |+. ... -.+..++.+.+++++|...+++..+.........|..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333334445566788888888888887652 322 222 3455777888888888888888877643333334444
Q ss_pred HHHHHHH--cC---------------C---HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC
Q 036198 348 FLKVLCD--NK---------------N---GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 348 li~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 407 (499)
.+.+.+. .+ + ...|...|+++++ -|=...-..+|...+..+.+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH-
Confidence 4444331 10 1 1233344444443 333333344555444444332
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
-...--.+.+-|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0001124556688889999899889888876 334456677788899999999999888776654
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.39 E-value=0.14 Score=53.03 Aligned_cols=223 Identities=11% Similarity=-0.013 Sum_probs=152.5
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
+...|+..|-+..+.. .-=...|..|...|....+...|.+.|+...+.. ..+........+.|+...+++.|..
T Consensus 473 ~~~~al~ali~alrld----~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD----VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 3667777777666654 2235688899999998889999999999988764 3456677788899999999999999
Q ss_pred HHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC
Q 036198 329 FLEEMGNKG-YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 329 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 407 (499)
+.-..-+.. ...-...|....-.|.+.++...|..-|+...+..+ .|...|..+..+|...|.+..|.++|.+....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 843322221 001122233344556778889999999988887553 57789999999999999999999999888764
Q ss_pred CCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 408 CAQDVDTYCVMID--GLFDCSKVEEACFLLEEVVNK------GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 408 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.|+. +|..... .-+..|.+.+|...+...... +-.--..++-.+...+...|-..+|..++++-.+.+--
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4443 3443333 335678899998888776532 11122345555555556667777777777776665443
Q ss_pred h
Q 036198 480 V 480 (499)
Q Consensus 480 ~ 480 (499)
.
T Consensus 704 ~ 704 (1238)
T KOG1127|consen 704 S 704 (1238)
T ss_pred H
Confidence 3
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.017 Score=53.01 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP--TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
.|......|-..|++++|.+.|.+..+.....-.+ -...|......|.+. ++++|...+++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------A 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------H
Confidence 34556667777888888888887664321000001 112222222233222 44444444444 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHH----CCCC-cChhhHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN-KNGDEALRLYGRMIE----VGCW-PSVQTYNMLISMY 387 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~~~ 387 (499)
+..|...|++..|-+.+..+ ...|... |+++.|.+.|++..+ .|.. .-..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555666666554444433 2334444 666666666666543 1211 1123455666667
Q ss_pred HhcCCchHHHHHHHHHhHCCCC-----CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 036198 388 FELGEPDGAFETWHEMDKRGCA-----QDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLP--YRKFDSYLMQL 457 (499)
Q Consensus 388 ~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~ 457 (499)
.+.|++++|.++|++....-.. .+.. .|-..+-++...|+.-.|...+++.... ++..+ ......|+.+|
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7777777777777776553221 1221 1222223444567777777777776644 23222 33455556555
Q ss_pred H
Q 036198 458 S 458 (499)
Q Consensus 458 ~ 458 (499)
-
T Consensus 246 ~ 246 (282)
T PF14938_consen 246 E 246 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.30 E-value=0.027 Score=47.38 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
....+..+...+...|++++|...|++..+.... .+ ....+..+...+.+.|++++|...+.+..+.. +.+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED--PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 4456777788888899999999999988875421 12 24677888888888999999999998888753 23455666
Q ss_pred HHHHHHHhcCCHHHHHH
Q 036198 312 EVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~ 328 (499)
.+...+...|+...+..
T Consensus 111 ~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHcCChHhHhh
Confidence 66777777776555443
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.16 Score=47.10 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
..+.+..|.-+...|+...|.++-.+.. + |+..-|-.-+.+++..++|++..++... + -++..|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 3455666777788899888888866652 3 8899999999999999999988876543 1 244789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
|.+.|+..+|..++..+ .+..-+..|.+.|++.+|.+...+
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999988772 124556677888888888665443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.23 E-value=0.027 Score=47.35 Aligned_cols=91 Identities=9% Similarity=-0.004 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD--VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677777788888999999999988876532222 356777788888889999998888887775322 45566666
Q ss_pred HHHHHHcCCHHHHH
Q 036198 349 LKVLCDNKNGDEAL 362 (499)
Q Consensus 349 i~~~~~~g~~~~a~ 362 (499)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766654433
No 164
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.18 Score=46.89 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=97.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
..+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++..++... +-++.-|...+.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 3455666777888999988888877663 37999999999999999999988876432 2355899999999
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
|.+.|+..+|..++..+ .+..-+..|.+.|++.+|.+...+.. |...+..+...+..
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG 303 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence 99999999999988872 23677888999999999988765432 55555555544433
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.22 E-value=0.00069 Score=49.27 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 036198 356 KNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 434 (499)
|+++.|..+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555543211 1222333345555555555555555544 11100 1112222334444555555555555
Q ss_pred HH
Q 036198 435 LE 436 (499)
Q Consensus 435 ~~ 436 (499)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.22 E-value=0.0006 Score=49.56 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=40.0
Q ss_pred cCCchHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
.|+++.|+.+++++.+... .|+...+-.+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666655422 11233333455666666666666666655 22211 122333344556666666666666
Q ss_pred HHHH
Q 036198 469 LSDH 472 (499)
Q Consensus 469 ~~~~ 472 (499)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.21 E-value=0.11 Score=46.43 Aligned_cols=184 Identities=9% Similarity=-0.000 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY---AIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
+...+-.....+.+.|++++|.+.|+.+..... -+...- -.+..++.+.+++++|...+++..+.--.-...-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 333343455566778999999999999998752 222332 4566788899999999999999987632222233
Q ss_pred HHHHHHHHHh--cC---------------CH---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 310 YKEVLEGMCL--AG---------------KV---EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 310 ~~~ll~~~~~--~g---------------~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
|...+.+.+. .+ +. ..|.+.|+.+.+ -|-...-..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHH
Confidence 4444444332 11 11 233344444443 3333333445554444443
Q ss_pred HCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
.. .-..- -.+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 172 ~~---la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 DR---LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH---HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 21 11111 24556677888888888888888764 333344566677788888888888877766543
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.20 E-value=0.035 Score=55.33 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
..|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444333334455555555555555433 3444555555555555555555555555443
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.19 E-value=0.012 Score=56.03 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=79.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 428 (499)
...+...|++++|...|.+.++... -+...|..+..+|...|++++|...++...+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4556678999999999999988652 356778888889999999999999999988763 23566788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036198 429 EEACFLLEEVVNKGLKLPYRKFDSYL 454 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~p~~~~~~~ll 454 (499)
++|...|++....+ |+......++
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 99999999988765 4444444443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.16 E-value=0.013 Score=55.68 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=77.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
-...+...|++++|++.|++..+.. +-+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3566778899999999999999876 4567788888889999999999999999998874 3466778888889999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 036198 320 AGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~ 337 (499)
.|++++|...|+...+.+
T Consensus 83 lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA 100 (356)
T ss_pred hCCHHHHHHHHHHHHHhC
Confidence 999999999999988764
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.045 Score=50.27 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
.|....+.|-..|++++|.+.|.+... +... .+-.. -...|.....+|.+. ++++|.+.+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~---------------~~~~---~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~ 97 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD---------------CYEK---LGDKFEAAKAYEEAANCYKKG-DPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH---------------HHHH---TT-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH---------------HHHH---cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 455556678888999999888887643 1111 11111 123344444444443 666666666
Q ss_pred HHHHHcCCCCCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCcC--HHhHHHHHHHHHhcCCHHHHHH
Q 036198 258 EFMRTKGSTISSPT--AKTYAIMIVALVQN-DRMEECFSLLGHMINS----GCLPD--VSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 258 ~~m~~~~~~~~~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
++..+.-...-.|+ ...+..+...|... |++++|.+.|.+..+. | .+. ...+..+...+.+.|++++|.+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65543110000111 22344444455555 6666666666655432 2 111 2234445555666666666666
Q ss_pred HHHHHHhCCCC-----CCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 329 FLEEMGNKGYP-----PDIV-TYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 329 ~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
+|++....-.. .+.. .|...+-++...|++..|.+.+++...
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66665543211 1111 122223344445666666666666554
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.10 E-value=0.024 Score=45.74 Aligned_cols=98 Identities=12% Similarity=-0.002 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
....-.+...+...|++++|..+|+.+...+ +-+..-|-.|..++-..|++++|...|....... +-|...+-.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3344455566677788888888888777765 3455666667777777788888888887777765 3566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
-.++...|+.+.|.+.|+..+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777788888777777765543
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.09 E-value=0.014 Score=48.98 Aligned_cols=62 Identities=18% Similarity=0.038 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc--ChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP--SVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
.|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|.+.++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554332111 122444555555555555555555555443
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0034 Score=42.89 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=41.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
...+.+.|++++|...|++.++... -+...+..+..++...|++++|..+++++.+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456677777777777777776652 25666677777777777777777777777766554
No 175
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.97 E-value=0.35 Score=45.77 Aligned_cols=197 Identities=10% Similarity=0.084 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH-------HHHHHHh----cCCHHHHHHHHHHHHhCCCCC
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE-------VLEGMCL----AGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~----~g~~~~a~~~~~~m~~~~~~p 340 (499)
..+|..++....+.++...|.+.+.-+.-. .|+...-.. +-+..|. .-+...-+.+++.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 456777777788888888888777766543 233322111 1122221 112233344555554443321
Q ss_pred CHhhHHHHHH---HHHHcCC-HHHHHHHHHHHHHCCCCcChhhHHH----HHHHHHh---cCCchHHHHHHHHHhHCCCC
Q 036198 341 DIVTYNCFLK---VLCDNKN-GDEALRLYGRMIEVGCWPSVQTYNM----LISMYFE---LGEPDGAFETWHEMDKRGCA 409 (499)
Q Consensus 341 ~~~~~~~li~---~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~----li~~~~~---~~~~~~a~~~~~~m~~~~~~ 409 (499)
...-..|+. -+-+.|. -++|.++++...+-. .-|..+-|. +=.+|.. ...+.+-.++-+-+.+.|+.
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 111222222 2334454 788888888887632 122222222 2223332 24566666666677778877
Q ss_pred CCHHH----HHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 410 QDVDT----YCVMID--GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 410 p~~~~----~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
|-... -|.+.+ -+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++..+.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 65433 333433 24467898888766555544 46899999988888889999999999988774
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.96 E-value=0.022 Score=45.95 Aligned_cols=87 Identities=16% Similarity=0.044 Sum_probs=40.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
.+...|++++|.++|+.+..... -+..-|-.|.-+|-..|++++|.+.|........ -|+..+-.+-.++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 33445555555555555444321 2233334444444445555555555555444332 234444444444555555555
Q ss_pred HHHHHHHHH
Q 036198 431 ACFLLEEVV 439 (499)
Q Consensus 431 a~~~~~~m~ 439 (499)
|.+.|+...
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0046 Score=42.68 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=38.5
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
.+.|++++|+++|+.+.... +-+...+..+..+|.+.|++++|..+++.+... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 35667777777777776664 336666666777777777777777777777665 34544443
No 178
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.94 E-value=0.053 Score=44.16 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHHHH---HHHhCCChHHHHHHHHHhhcC----CCCChh--hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036198 178 NALNLLLD---ALCKCGLVDYAETICKRVKNK----VKPNAN--TYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248 (499)
Q Consensus 178 ~~~~~li~---~~~~~g~~~~A~~~~~~m~~~----~~p~~~--~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 248 (499)
..|..++. .....|+.+.+.+.+.++..- +-|+.. .|..-....++.+ -..+...++..+...|
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLREL-------YLDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcc
Confidence 34444433 345678889998888887652 222322 2322222222222 1224455667777788
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHhH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVSTY 310 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 310 (499)
++++|.++.+.+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 77 ~~~~a~~~~~~~l~~d----P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 77 DYEEALRLLQRALALD----PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8888888888888875 56777888888888888888888888877643 3777776654
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.93 E-value=0.044 Score=45.90 Aligned_cols=114 Identities=10% Similarity=-0.062 Sum_probs=78.4
Q ss_pred HHHHHHHHHHH-HCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHH
Q 036198 359 DEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ--DVDTYCVMIDGLFDCSKVEEACFLL 435 (499)
Q Consensus 359 ~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 435 (499)
..+...+..+. ..+..--...|..+...+...|++++|...|+........| ...++..+...+...|++++|...+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444443 22222234567778888888999999999999987653222 2357888889999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 036198 436 EEVVNKGLKLPYRKFDSYLMQLS-------VIGDLGAIHKLSDHM 473 (499)
Q Consensus 436 ~~m~~~~~~p~~~~~~~ll~~~~-------~~g~~~~a~~~~~~m 473 (499)
++..... +....++..+...+. ..|+++.|...+++.
T Consensus 96 ~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9998764 223555666666666 788877555544443
No 180
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.034 Score=45.31 Aligned_cols=130 Identities=23% Similarity=0.241 Sum_probs=63.4
Q ss_pred CHHHHHHHHH---HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 233 DNFTYNTAID---TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 233 ~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
|...|..++. .....|+.+.+...++++........-|+... ..-.......+..+. ..+
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~ 64 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDA 64 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHH
Confidence 3444545533 34567788888888888876432112222111 000111111111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCcChhhH
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-----EVGCWPSVQTY 380 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~ 380 (499)
...++..+...|++++|..+.+.+..... .+...|..+|.+|...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44455666667777777777777666532 256667777777777777777777776654 23666665543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.88 E-value=0.0055 Score=42.27 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=38.3
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
...|++++|.++|+++...... +...+..+..+|.+.|++++|.++++++.+..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3567777777777777666532 56666667777777777777777777777766653
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.88 E-value=0.0065 Score=42.04 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhc
Q 036198 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG-DLGAIHKLSDHMRKFY 477 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~ 477 (499)
+...|..+...+...|++++|...|++..+... -+...|..+..+|.+.| ++++|.+.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 355677777777788888888888888777653 25667777777788887 6888888887776654
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.88 E-value=0.15 Score=44.12 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL--KLPYRKFDSYLMQLS 458 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~ 458 (499)
..++.-|=...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.+++.=. +-.......++.+|.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33334444444444555544444331 000112345567777777777777777776521 111334556667777
Q ss_pred hcCCHHHH
Q 036198 459 VIGDLGAI 466 (499)
Q Consensus 459 ~~g~~~~a 466 (499)
+.|..+.+
T Consensus 190 ~l~~~~~a 197 (203)
T PF13525_consen 190 KLGLKQAA 197 (203)
T ss_dssp HTT-HHHH
T ss_pred HhCChHHH
Confidence 77776644
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.88 E-value=0.42 Score=45.18 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=113.3
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH-HHHH
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY-CVMI 419 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li 419 (499)
..+|...+++..+....+.|..+|-++.+.| +.+++..++++|..++ .|+...|.++|+.-... -||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567788888889999999999999999998 6688899999999887 68889999999865543 3455444 4566
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH-----HHHHHHHH
Q 036198 420 DGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI-----ARRLALNQ 489 (499)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~~~ 489 (499)
.-+..-++-+.|..+|+..+.+ +..+ ...|..+|.--..-|+...+..+-++|.+.+|... .++|+|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 6677889999999999966543 1122 55889999988999999999999999999888753 24555543
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.86 E-value=0.028 Score=50.54 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV----DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL--KLPYRKFDS 452 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ 452 (499)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.-. +.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4454444445567777777777777664 2332 3555666777778888888888887775421 112444545
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+...+...|+.++|.++++++.+.||....
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 566677788888888888888888776554
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.21 Score=43.33 Aligned_cols=183 Identities=12% Similarity=0.158 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH--HhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV--STYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l 313 (499)
.+-.....+...|++++|.+.|+.+...... .+-.....-.+..++.+.|+++.|...+++..+.- |+. .-+...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHH
Confidence 3344556677889999999999999887532 23335566677888999999999999999988652 322 223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPP---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
+.+.+......... ........ -...+..++.-|=.+.-..+|...+..+.+. .-. .--.+...|.+.
T Consensus 84 ~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~-~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAE-HELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHH-HHHHHHHHHHCT
T ss_pred HHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHc
Confidence 33332221111110 00000000 0123444455555555555665555554431 111 112356678888
Q ss_pred CCchHHHHHHHHHhHCCCCCCH----HHHHHHHHHHHhCCCHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDV----DTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~ 432 (499)
|.+..|..-++.+.+. -|+. .....++.+|.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888888765 2332 34567778888888776443
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.85 E-value=0.72 Score=47.47 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|+.-.....++.+- ..|..++.++... |.|..++|..+++.....+. -
T Consensus 26 kkal~~~~kllkk~Pn----~~~a~vLkaLsl~--r~gk~~ea~~~Le~~~~~~~------------------------~ 75 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPN----ALYAKVLKALSLF--RLGKGDEALKLLEALYGLKG------------------------T 75 (932)
T ss_pred HHHHHHHHHHHHHCCC----cHHHHHHHHHHHH--HhcCchhHHHHHhhhccCCC------------------------C
Confidence 4566666655555332 3355555555422 78888999988887665542 3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
|..+...+-..|.+.|+.++|..+|+.... ..|+..-...+..+|.+-+++.+-.+
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~------------------------~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQ------------------------KYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHh------------------------hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999998765 34566666677777777777665444
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDR----------MEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~ 324 (499)
.--++.+. .+-+...+=++++...+.-. ..-|.+.++.+.+.+ -.-+..-.-.-+..+-..|+++
T Consensus 132 aa~~LyK~----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 132 AALQLYKN----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHh----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 43333332 23344455555555544321 234555556665443 1112222222334455677788
Q ss_pred HHHHHHH-HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 325 EAYKFLE-EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 325 ~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
+|.+++. ...+.-...+...-+--+..+...+++.+..++-.++...|
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8888873 33333223333444455666777788888888887777766
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.82 E-value=0.14 Score=51.05 Aligned_cols=137 Identities=9% Similarity=-0.067 Sum_probs=75.7
Q ss_pred CCcCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 036198 303 CLPDVSTYKEVLEGMCLAG-----KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK--------NGDEALRLYGRMI 369 (499)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~ 369 (499)
.+.+...|...+++..... +.+.|..+|++..+.... ....|..+..++.... +...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666777766644322 255677777776665321 2333333333222211 1222333333322
Q ss_pred HC-CCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 370 EV-GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 370 ~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.. ....+...|.++.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++....+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 122334556666555556677777777777777653 566677777777777777777777777766554
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.51 Score=46.67 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=59.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH--------
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV-------- 412 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------- 412 (499)
+..+...+...+-+...+.-|-++|..|-.. ..+++.....+++++|..+-+...+. .||+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555555667777788888777532 34566777888888888887776553 3332
Q ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 413 ---DTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 413 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.-|...-.+|.++|+-.+|..+++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22344456788888889999988887654
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.34 Score=45.53 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSG---CLPDVSTYKEVLEGMCL---AGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
+...++-.|....+++...++.+.|.... +.-+...--...-++.+ .|+.++|.+++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33445556777778888888888887651 11111211223334445 7788888888877555555667777777
Q ss_pred HHHHH
Q 036198 348 FLKVL 352 (499)
Q Consensus 348 li~~~ 352 (499)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 76665
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.68 E-value=0.097 Score=40.63 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC---H-HHHHHHHHHHHh
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD---V-DTYCVMIDGLFD 424 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~-~~~~~li~~~~~ 424 (499)
++-..|+.++|..+|++....|.... ...+-.+..++...|++++|..+++..... .|+ . .....+..++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHH
Confidence 34445666666666666555554322 224444555555566666666666655443 122 1 111122234445
Q ss_pred CCCHHHHHHHHHHHH
Q 036198 425 CSKVEEACFLLEEVV 439 (499)
Q Consensus 425 ~g~~~~a~~~~~~m~ 439 (499)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666665554443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.68 E-value=0.15 Score=39.51 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=8.3
Q ss_pred HhcCCHhHHHHHHHHHHHcC
Q 036198 245 CKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~ 264 (499)
-..|+.++|+.+|++....|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~g 31 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAG 31 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcC
Confidence 33344444444444444433
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.66 E-value=0.012 Score=40.08 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+...+.+.|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456667777777777777777764 335667777777777777777777777777654
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.23 Score=43.40 Aligned_cols=130 Identities=11% Similarity=-0.030 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH--
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE-- 315 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-- 315 (499)
+.++.++.-.|.+.-...++.+..+.. .+.+......+++.-.+.||.+.|...|++..+..-..|..+++.++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455555555666777777777777765 345566667777777777777777777777665544455555544432
Q ss_pred ---HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 316 ---GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 316 ---~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.|.-.+++..|...+.+....+.. |+...|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233445666666666666555322 4444444333334456777777777777664
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.22 Score=44.58 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
|...|-.|-.+|...|+.+.|..-|....+. -.+|...+..+..++... ..-.++..+|++++.... -+..+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 4455555555555555555555555555443 122344444444443321 123455555655555542 24444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHH
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 489 (499)
|...+...|++.+|...|+.|.+..++..+.+-.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555556666666666666666655555554444433
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.58 E-value=0.016 Score=40.05 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMIN 300 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~ 300 (499)
++.+|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666677777777777777777776654 335566666666677776 57777777666654
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.54 E-value=0.043 Score=43.05 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE- 370 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 370 (499)
..++..+|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445556666666666666666555543211 2234444444444444444444444444444332
Q ss_pred CCCCcChhhHHHHHH
Q 036198 371 VGCWPSVQTYNMLIS 385 (499)
Q Consensus 371 ~~~~~~~~~~~~li~ 385 (499)
.+++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 233333444444444
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.027 Score=50.08 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=68.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 036198 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361 (499)
Q Consensus 282 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 361 (499)
..+.+++++|++.|.+.++.. +-|.+-|..-..+|++.|.++.|.+-.+..+..+.. -..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 456777788888887777763 345555666677778888887777777766665322 356777777888888888888
Q ss_pred HHHHHHHHHCCCCcChhhHHHHHH
Q 036198 362 LRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 362 ~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
.+.|+...+ +.|+-.+|-.=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 888777776 4466666543333
No 199
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.52 E-value=0.038 Score=43.34 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 036198 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK-GLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~ 460 (499)
...|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46688888899999998889999999998887654 7777888888888655433
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.43 E-value=0.43 Score=47.14 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--------
Q 036198 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY-------- 447 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------- 447 (499)
+..+...+..-+.+...+.-|-++|..|-+. ..++......+++.+|..+.+..-+. .||.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555556677888899999998653 56777788899999999998765443 2222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 448 ---RKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 448 ---~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
.-|...-.||.+.|+-.+|.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1334455789999999999999998764
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.40 E-value=0.29 Score=48.69 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN--KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
.|....|..+.......-.++-|+..|-+... ++ ++..++.. -.+...-.+=+.+| -|+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi------------k~vkrl~~---i~s~~~q~aei~~~--~g~fe 751 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI------------KLVKRLRT---IHSKEQQRAEISAF--YGEFE 751 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccch------------hHHHHhhh---hhhHHHHhHhHhhh--hcchh
Confidence 46666777777766666667777766655543 10 01111100 00111111122222 47788
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPDVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
+|++++-+|..++ ..|..+.+.|+|-.+.++++.=- .+. .--...++.+.+.++....|++|.+.
T Consensus 752 eaek~yld~drrD------------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD------------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred Hhhhhhhccchhh------------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776554 23455566666666665553211 000 00123455555555555555555544
Q ss_pred HHHHHh---------------------CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 330 LEEMGN---------------------KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 330 ~~~m~~---------------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
+..-.. ...+-+....-.+..++.+.|.-++|.+.|-+-.. | ...+.+|.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv 889 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCV 889 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHH
Confidence 433211 11222344444555555555655555554432211 1 22344555
Q ss_pred hcCCchHHHHHHHH
Q 036198 389 ELGEPDGAFETWHE 402 (499)
Q Consensus 389 ~~~~~~~a~~~~~~ 402 (499)
..+++.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666665554
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.31 E-value=0.5 Score=39.12 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=45.0
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHH
Q 036198 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNML 383 (499)
Q Consensus 305 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l 383 (499)
|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+.... -+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3333333444455555555555555555444333334444444444444455555555555554443200 011222333
Q ss_pred HHHHHhcCCchHHHHHHHHHhH
Q 036198 384 ISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~ 405 (499)
.+.+...|....|+.-|+...+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444445555555555554444
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.30 E-value=0.13 Score=47.76 Aligned_cols=270 Identities=13% Similarity=0.020 Sum_probs=150.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
+.|+.+....+|+...+.| ..+..++. .+|.-|.++|.-.+++++|++....=.-
T Consensus 29 k~gdcraGv~ff~aA~qvG--TeDl~tLS------------------AIYsQLGNAyfyL~DY~kAl~yH~hDlt----- 83 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVG--TEDLSTLS------------------AIYSQLGNAYFYLKDYEKALKYHTHDLT----- 83 (639)
T ss_pred hccchhhhHHHHHHHHHhc--chHHHHHH------------------HHHHHhcchhhhHhhHHHHHhhhhhhHH-----
Confidence 8899999999999998887 23322222 3678888888888999999886432100
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH----HHcCCCCCCCCHHHHHHHHHHHHHcC
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM----RTKGSTISSPTAKTYAIMIVALVQND 286 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~p~~~~~~~ll~~~~~~~ 286 (499)
+.+...... -...+...|...+--.|.+++|+-...+- .+.|.. .....++-.+...|...|
T Consensus 84 -----------lar~lgdkl-GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 84 -----------LARLLGDKL-GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKG 149 (639)
T ss_pred -----------HHHHhcchh-ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcc
Confidence 000000000 01111122333333344444444322111 111110 011223333444444333
Q ss_pred C--------------------HHHHHHHHHHHHH----cCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC
Q 036198 287 R--------------------MEECFSLLGHMIN----SGC-LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG----NKG 337 (499)
Q Consensus 287 ~--------------------~~~a~~~~~~m~~----~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~~ 337 (499)
+ ++.|.+.|.+=.+ .|- ......|..|-+.|.-.|+++.|....+.-. +.|
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG 229 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG 229 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh
Confidence 2 3344444433221 110 1123456666666777889999887765422 222
Q ss_pred CC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CcChhhHHHHHHHHHhcCCchHHHHHHHHHhH----C-
Q 036198 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMI----EVGC-WPSVQTYNMLISMYFELGEPDGAFETWHEMDK----R- 406 (499)
Q Consensus 338 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~- 406 (499)
-+ .....+..+.+++.-.|+++.|.+.|+.-. +.|- .......-+|..+|.-..++++|+.++.+-.. .
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234567888888888999999998887643 2231 12345566777888877888888887765321 1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
...-....+..|-.+|...|..++|+.+....+
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 112245577788888888888888887776554
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.28 E-value=0.099 Score=47.09 Aligned_cols=102 Identities=11% Similarity=-0.028 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 258 (499)
.|...+..+.+.|++++|...|+.+....|-+ .. ....+-.+..+|...|++++|...|+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------------~~--a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------------TY--QPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------------cc--hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555566666666666655421100 00 01234455666666666666666666
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 259 ~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
.+.+.... .+.....+-.+...+...|+.++|..+|+.+.+.
T Consensus 205 ~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 205 SVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66654321 1122334444445555666666666666666554
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.38 Score=43.14 Aligned_cols=98 Identities=9% Similarity=0.082 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG---KVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++.... .-.++..+|+++...... ++.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 34444444444444444444444444444331 223333333333322211 123344444444443221 3333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 33444444444444444444444
No 206
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.066 Score=47.70 Aligned_cols=101 Identities=21% Similarity=0.169 Sum_probs=78.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 428 (499)
+-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|.+.|.++.|++=.+..... .| -..+|..|-.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34667889999999999998854 245677788888999999999998888777664 33 345888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036198 429 EEACFLLEEVVNKGLKLPYRKFDSYLM 455 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~p~~~~~~~ll~ 455 (499)
++|.+.|++.++. .|+-.+|..=+.
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 9999999887765 477666655443
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.21 E-value=1.1 Score=41.82 Aligned_cols=321 Identities=13% Similarity=0.065 Sum_probs=169.9
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~ 165 (499)
-++..+-.+|..+.+.|+.-.++.| |..|-.++.-. -.|+-..|.++-.+-.+.
T Consensus 60 wlv~~iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAa--gAGda~lARkmt~~~~~l----------------- 113 (531)
T COG3898 60 WLVRSIWESPYTARRYFRERKRDRG-------YQALSTGLIAA--GAGDASLARKMTARASKL----------------- 113 (531)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhh--ccCchHHHHHHHHHHHhh-----------------
Confidence 3445566778888899988776666 66666555422 356777777766553321
Q ss_pred HHhhhcCCCCCHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036198 166 TEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243 (499)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~ 243 (499)
+.-|..-.-.|+.+- .-.|+++.|.+-|+.|... -+|...| ...|.-.
T Consensus 114 -------lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----------------PEtRllG-------LRgLyle 163 (531)
T COG3898 114 -------LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----------------PETRLLG-------LRGLYLE 163 (531)
T ss_pred -------hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----------------hHHHHHh-------HHHHHHH
Confidence 122333333333332 3469999999999999862 1111111 1233333
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHh--HHHHHHHHHh-
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVST--YKEVLEGMCL- 319 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~--~~~ll~~~~~- 319 (499)
.-+.|..+.|...-+..-..- +--...+...+...+..|+|+.|+++.+.-.... +.++..- -..|+.+-..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A----p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA----PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc----cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 445677777777777666553 2234667777777778888888888777665432 2222211 1122222111
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 320 --AGKVEEAYKFLEEMGNKGYPPDIVTY-NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 320 --~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
..+...|...-.+..+ ..||...- .....++.+.|+..++-.+++.+-+....|+ .+. +..+.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cH
Confidence 1234444443333322 23443321 2233556677777777777777766543333 221 222233343 33
Q ss_pred HHHHHHHhHC-CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 036198 397 FETWHEMDKR-GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS-VIGDLGAIHKLSDHM 473 (499)
Q Consensus 397 ~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m 473 (499)
.+-+++.... .++| +..+--.+..+-...|++..|..--+..... .|....|..|.+.-. ..||-.++...+.+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3333333221 1233 3344445556666667766665555444332 356666655555443 347777777766666
Q ss_pred Hhh
Q 036198 474 RKF 476 (499)
Q Consensus 474 ~~~ 476 (499)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 554
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.17 Score=44.26 Aligned_cols=133 Identities=8% Similarity=-0.064 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH---
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS--- 385 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~--- 385 (499)
+.+.++..+.-.|.+.-...++.+..+...+-++...+.+...-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33445555566666666667777776665555666666677777777777777777776665433344444443332
Q ss_pred --HHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 386 --MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 386 --~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.|.-++++..|...+.++....-. |+...|.-.-+..-.|+...|.+.++.|+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344456666777777666554211 33333322222233567777777777777654
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.01 E-value=0.063 Score=37.46 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=26.9
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
|.+.+++++|.++++.+...+. .+...+.....++.+.|++++|.+.+++..+..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4444555555555555544432 1344444444445555555555555555554443
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=1.9 Score=43.73 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=85.6
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHH
Q 036198 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419 (499)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 419 (499)
..-.+.+--+.-+...|+..+|.++-.+.. .||...|-.=+.+++..+++++-+++-+.++ .+.-|..++
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344455556666777889899988877764 3888889888999999999988877766653 245688889
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.+|.+.|+.++|.+++.+.- +.. -...+|.+.|++.+|.+..-+
T Consensus 752 e~c~~~~n~~EA~KYiprv~------~l~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG------GLQ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccC------ChH---HHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999886542 111 567788888998888776544
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.88 E-value=1.6 Score=41.17 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ---NDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
..+...++-+|....+++...++++.+.........-+...-....-++.+ .|+.++|.+++..+......++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445566788888888888888888765210011122222233334555 78888888888886655567778788
Q ss_pred HHHHHHHH
Q 036198 311 KEVLEGMC 318 (499)
Q Consensus 311 ~~ll~~~~ 318 (499)
..+.+.|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 77776654
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.83 E-value=0.13 Score=47.72 Aligned_cols=132 Identities=12% Similarity=0.021 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHh----HCCC-CCCHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMI----EVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMD----KRGC-AQDVD 413 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~ 413 (499)
.|..|.+.|.-.|+++.|....+.-. +.|-+ .-...+..|..++.-.|+++.|.+.|+.-. +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555566666778888877665422 22322 223567888888889999999999888643 2221 12333
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVN----K-GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+.-.|-..|.-..++++|+.++.+-+. . ...-....+.+|..++...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445667777777788888888765432 1 1223567888999999999999999988777654
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.80 E-value=0.66 Score=36.05 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.+...+..+...|+-+...+++.++.+.+ .+++...-.+..||.+.|+..++.+++.+..+.+.+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455555666666666666666665432 456666666666666666666666666666655443
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.67 E-value=1 Score=37.36 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=110.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
+..+....=+.+...+-..+-.+ ..|+...--.+..+....|+..+|...|.+...--+.-|....-.+.++...
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~-----~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA-----IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh-----hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh
Confidence 44444444455544433333222 4578888888899999999999999999998876566678888888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 398 (499)
.+++..|...++.+.+.+.. -++.+...+...+...|.+.+|+.-|+..... -|+...-...-..++++|+.+++..
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 99999999999998776311 12334556778888999999999999998875 3555444444455677787666554
Q ss_pred HHHH
Q 036198 399 TWHE 402 (499)
Q Consensus 399 ~~~~ 402 (499)
-+..
T Consensus 215 q~~~ 218 (251)
T COG4700 215 QYVA 218 (251)
T ss_pred HHHH
Confidence 3333
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.67 E-value=0.1 Score=36.40 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
..|.+.+++++|.++++.+...+ +.+...|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666666666666654 335555666666666666666666666666654
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.64 E-value=0.031 Score=39.76 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.+|+.+...|...|++++|+..+++..+. |-. |+ ..++..+..+|...|++++|.+++++..+.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666666677777777777777666532 211 21 446666677777777777777777766553
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.62 E-value=0.46 Score=46.39 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=75.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
....+.++.-+-+.|.++.|+++..+-. .-.....+.|+++.|.++.++. .+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 3345666666666666666666543321 1233344566666666554332 355577777777
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 466 (499)
..+.|+++-|++.|.+..+ |..|.-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 7777777777777766543 4555555666677666666666666555 244455555566666666
Q ss_pred HHHHHHH
Q 036198 467 HKLSDHM 473 (499)
Q Consensus 467 ~~~~~~m 473 (499)
.+++.+-
T Consensus 422 v~lL~~~ 428 (443)
T PF04053_consen 422 VDLLIET 428 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6665554
No 218
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=1.2 Score=41.76 Aligned_cols=155 Identities=13% Similarity=0.073 Sum_probs=100.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH---------
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV--LCDNKNGDEALRLYGRMIEVGCWPSVQTYNML--------- 383 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------- 383 (499)
.++.-.|+.++|.+.-....+.. ....+...+.+ +...++.+.|...|++....+ |+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 35567788888888777766653 22233444433 334677788888888877654 443322111
Q ss_pred ----HHHHHhcCCchHHHHHHHHHhHC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH---H
Q 036198 384 ----ISMYFELGEPDGAFETWHEMDKR---GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS---Y 453 (499)
Q Consensus 384 ----i~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---l 453 (499)
-.-..+.|++..|.+.+.+.+.. ...|+...|.-...+..+.|+.++|+.-.++..+. |..-... -
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~r 327 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRR 327 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHH
Confidence 12235678888899999887654 45667777777777788889999998888877654 3333222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 454 LMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+++...++|++|.+-+++..+.-.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556667888888888887766433
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.49 E-value=0.06 Score=38.21 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS---SPT-AKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
.+++.+...|...|++++|+..|++..+.. ... .|+ ..+++.+...+...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666677777777777777776665431 001 111 3455666666666666666666666544
No 220
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.36 E-value=1.2 Score=35.89 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.++..+...+.......+++.+...+. .+...++.++..|++.+. +.....+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444445555555555555555442 344455555555554322 222222221 122233344555555555
Q ss_pred CchHHHHHHHHH
Q 036198 392 EPDGAFETWHEM 403 (499)
Q Consensus 392 ~~~~a~~~~~~m 403 (499)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555554
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=95.29 E-value=0.75 Score=37.56 Aligned_cols=85 Identities=12% Similarity=-0.098 Sum_probs=42.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 433 (499)
..|++++|..+|.-+...+. -+..-+..|..+|-..+++++|...|......+. -|+..+-..-.++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 45666666666655554432 2333344455555555556666665554433221 122223334445555566666666
Q ss_pred HHHHHHH
Q 036198 434 LLEEVVN 440 (499)
Q Consensus 434 ~~~~m~~ 440 (499)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555544
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.28 E-value=1.9 Score=37.96 Aligned_cols=178 Identities=11% Similarity=0.085 Sum_probs=92.7
Q ss_pred HHcCCHHHHHHHHHHHHHcC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----
Q 036198 283 VQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN----- 355 (499)
Q Consensus 283 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 355 (499)
.+.|++++|...|+.+...- -+-...+.-.++.++.+.++++.|....++..+.........|..-|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 56677777777777776441 12223444455666777777777777777766553332333444444444421
Q ss_pred --CCHHHH---HHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH-HHHHHHHHhCCCHH
Q 036198 356 --KNGDEA---LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY-CVMIDGLFDCSKVE 429 (499)
Q Consensus 356 --g~~~~a---~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~ 429 (499)
.+...+ ..-|++++.. -||. .-...|...+..+... ..-+ ..+.+-|.+.|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcChH
Confidence 122222 2223333321 1221 1112222222222111 0011 23445667777777
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 430 EACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.|..-+++|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..-++...
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 777777777766 2212 33455566777788888888777777766666554
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.12 E-value=0.34 Score=42.82 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=58.4
Q ss_pred cCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 305 PDVSTYKEVLEGMCL-----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 305 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
-|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+.. +.| ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHH
Confidence 344555555554443 2445555555666666666666666666666553211 111 111
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
+....-.|-+ +-+-+.+++++|...|+.||..+-..++.+|.+.+-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2222222221 223477888888888888888888888888877665
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=95.10 E-value=1.1 Score=36.57 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=66.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
..-+...|++++|..+|.-+...++. +..-|..|..++-..+++++|...|......+. -|...+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 34456788899999998887766543 555566666777778889999988887765542 3444455567788888999
Q ss_pred hHHHHHHHHHhHC
Q 036198 394 DGAFETWHEMDKR 406 (499)
Q Consensus 394 ~~a~~~~~~m~~~ 406 (499)
+.|...|....+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999888887763
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.82 E-value=2.3 Score=42.21 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=25.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+.+...|++++|++.|+........-.+.....+--+.-.+.-..+|++|...|..+.+.
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 444455666666666654432110000111222223333344455555555555555543
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.79 E-value=0.29 Score=43.26 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=63.8
Q ss_pred CHhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH
Q 036198 341 DIVTYNCFLKVLCD-----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415 (499)
Q Consensus 341 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 415 (499)
|..+|-..+..+.. .+..+=....++.|.+.|+.-|..+|+.|++.+-+-. +.|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence 55566666655543 2344555555566666666666666666665543221 1121 122
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
....-.|-+ +-+=+..++++|...|+.||..+-..+++++.+-|-.
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222222 2244789999999999999999999999999887764
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=3.6 Score=42.36 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHhHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT----FCKARMVTEAA 254 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~a~ 254 (499)
....-++.+++...++.|..+-+.-. .|..+...++.. +.+.|++++|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---------------------------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~ 388 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---------------------------LDEDTLAEIHRKYGDYLYGKGDFDEAT 388 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---------------------------CCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45667777888888888877755432 244444444444 55789999999
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 255 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
..|-+.... ..|+ .+|.-|.....+.+-..+++.+.+.|+ .+...-+.|+.+|.+.++.++..++.+...
T Consensus 389 ~qYI~tI~~----le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 389 DQYIETIGF----LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHccc----CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 988776543 3443 356667777778888889999999885 466777889999999999999888877655
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
.|.. ..-....+..+.+.+-.++|..+-..... +......++ -..+++++|.+.+..+.
T Consensus 459 -~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 459 -KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred -Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 3322 22345677777788888888776655432 334444444 35688999999988763
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=0.83 Score=40.52 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL-KL-PYRKFDSYL 454 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~ll 454 (499)
.|+.-+..+ +.|++..|..-|....+... .-....+--|..++...|++++|..+|..+.+.-. .| -+.++--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555543 45567777777766665421 11122344566667777777777777776665421 11 134555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 455 MQLSVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.+..+.|+.++|..+|+++.+.||....-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 677777777777777777777777655433
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.61 E-value=1.8 Score=41.18 Aligned_cols=145 Identities=16% Similarity=0.190 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY-NCFLK 350 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 350 (499)
.+|...|....+....+.|..+|-++.+.| +.+++..++++|..++ .|+...|..+|+.=... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356666777677777777777887777777 5666777777777555 46667777777653332 1333333 33455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 423 (499)
.+...++-+.|..+|+..... +..+ ...|..+|.--..-|++..+..+=+.|.+. -|-..+...+..-|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 556677777777777754432 1122 456777777777777777776666666553 344444444444443
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.51 E-value=3.4 Score=41.00 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPD-----IVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
+..++...+=.|+-+.+++.+..-.+.+ +.-. .-.|..++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4456666777788888888887765542 2211 1234444444443 35678899999998874 477666
Q ss_pred HHHH-HHHHHhcCCchHHHHHHHHHhHCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036198 380 YNML-ISMYFELGEPDGAFETWHEMDKRG---CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455 (499)
Q Consensus 380 ~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 455 (499)
|... .+.+...|++++|.+.|+...... .+.....+--+...+.-.+++++|...+..+.+..- .+..+|.-+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5433 345567799999999999765321 112334555666777888999999999999987652 35555554443
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHhhcC
Q 036198 456 QL-SVIGDL-------GAIHKLSDHMRKFYN 478 (499)
Q Consensus 456 ~~-~~~g~~-------~~a~~~~~~m~~~~~ 478 (499)
+| ...|+. ++|.+++.++.....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 33 567877 777888777765443
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.49 E-value=1.8 Score=33.76 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH---HHHHHHHHhc
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY---KEVLEGMCLA 320 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~ 320 (499)
+.-.|.+++..++..+..... +..-+|-+|--....-+-+-..++++.+-+ -.|.... ..++.+|+..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss------ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~ 82 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS------NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKR 82 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-------HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHT
T ss_pred HHHhchHHHHHHHHHHHcCcC------CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHh
Confidence 344678888888888887654 444455555444444444445555544433 2333222 2234444443
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
|. +.......+.....+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++
T Consensus 83 n~------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 83 NK------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp T---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cc------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 32 3334455566666677777777777766542 2456666666677777777777777777
Q ss_pred HHHhHCCCC
Q 036198 401 HEMDKRGCA 409 (499)
Q Consensus 401 ~~m~~~~~~ 409 (499)
.+.-+.|++
T Consensus 144 ~~ACekG~k 152 (161)
T PF09205_consen 144 KEACEKGLK 152 (161)
T ss_dssp HHHHHTT-H
T ss_pred HHHHHhchH
Confidence 777666643
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.45 E-value=1.5 Score=34.94 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
.|..-..+ .+.|++++|.+.|+.+...- -.-....--.|+.+|.+.+++++|...+++.++........-|...+.+
T Consensus 13 ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34433333 46678888888887777642 1123445566777777888888888888777776433333456666666
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
++.-...+ ..+..+. +..-|. +....|..-|+++.+.||.+..
T Consensus 92 L~~~~~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCChh
Confidence 55433222 2222222 212121 2234777778888888777443
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.31 E-value=6.7 Score=39.64 Aligned_cols=205 Identities=11% Similarity=0.060 Sum_probs=96.3
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHc--cCCChHHHHHHHHHhhcCCCCCC--------CHHHHHHHHHHHhcchhhhhhHHH
Q 036198 68 MEKALDSLGVPLTTDSVVGVLQR--FQFEEKIAFRFFMWAGHQDNYAH--------EPLAYNLMIDILSSTKYKAKQFRL 137 (499)
Q Consensus 68 ~~~al~~~~~~~~~~~~~~~l~~--~~~~~~~a~~~f~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~~~~~ 137 (499)
+++|.+.....+.|.++.-+-+. .+.+-+.|...|-....-.|++. +...-.+=|.+ --|.|++
T Consensus 679 ledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~------~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA------FYGEFEE 752 (1189)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh------hhcchhH
Confidence 44445555556777665443322 12333445555544443334321 11111122222 2378999
Q ss_pred HHHHHHHHHHcCCCc---ccHHHHHHHHHHHHHhhhcCCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 138 VCSMLDYMKRNNKVF---VPVDVLLMILKQYTEKIKVKTQP----EINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 138 a~~~~~~m~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
|.+++-+|-++.... .....+..+++.+ ...|-.. -..+|+.+...++....+++|.+.|..-...
T Consensus 753 aek~yld~drrDLAielr~klgDwfrV~qL~---r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 753 AEKLYLDADRRDLAIELRKKLGDWFRVYQLI---RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred hhhhhhccchhhhhHHHHHhhhhHHHHHHHH---HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 999988887665321 0111122222211 1111111 1346788888888888888888877654320
Q ss_pred hhhHHHH-HHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 036198 211 ANTYNIL-GMQTLEEMIQ--MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287 (499)
Q Consensus 211 ~~~~~~l-a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~ 287 (499)
......+ -.+.|+++.. ..++-+....-.+..++...|.-++|.+.|-+. + .|- +.+..|...++
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c----CcH-----HHHHHHHHHHH
Confidence 0000000 1222332221 123334455555666666666666666655432 1 121 23445556666
Q ss_pred HHHHHHHHHH
Q 036198 288 MEECFSLLGH 297 (499)
Q Consensus 288 ~~~a~~~~~~ 297 (499)
|.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 6666555443
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.30 E-value=0.84 Score=43.77 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=45.2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI----VTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 305 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+...++.+..+|.+.|++++|...|++..+.+ |+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777777777777777777777766653 332 34777777777777777777777777664
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.30 E-value=2.2 Score=41.10 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+.+...++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999998865 442 46999999999999999999999999885
No 236
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.21 E-value=4.5 Score=37.25 Aligned_cols=131 Identities=12% Similarity=0.225 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----HH
Q 036198 220 QTLEEMIQMGHAPDNFTYNTAIDTFCK--AR----MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR----ME 289 (499)
Q Consensus 220 ~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~----~~ 289 (499)
.+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++...-...++...+..++.. ..++ .+
T Consensus 83 ~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~ 160 (297)
T PF13170_consen 83 DIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAE 160 (297)
T ss_pred HHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHH
Confidence 457778888888787776554444333 22 256799999999998766567777788888766 3333 46
Q ss_pred HHHHHHHHHHHcCCCcCHHh--HHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 036198 290 ECFSLLGHMINSGCLPDVST--YKEVLEGMCLAGK--VEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 352 (499)
.++.+|+.+.+.|+..+... ...++..+..... ...+.++++.+.+.|+++....|..+.-..
T Consensus 161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 78888888888887665432 2223322222222 447788888888888888877776654433
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=9.1 Score=39.65 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=81.3
Q ss_pred HHHHHHHHhccCCCchHHHHHhhC----CCCCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhc
Q 036198 52 AKLYEAIIDNSNAYDNMEKALDSL----GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127 (499)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~al~~~----~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~ 127 (499)
..+...-.+.+.+.|++++|..++ +.--++.++...|.. ..-.-+--+-|...+.|+ .+...-..|+..|.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLda---q~IknLt~YLe~L~~~gl-a~~dhttlLLncYi- 442 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDA---QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYI- 442 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCH---HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHH-
Confidence 344555566677889999998876 222222233222211 111122333344445554 35566778899999
Q ss_pred chhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH---Hh--hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 036198 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT---EK--IKVKTQPEINALNLLLDALCKCGLVDYAETICKR 202 (499)
Q Consensus 128 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~---~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (499)
+.++.++..++.+... .|....+.++...+++.+. ++ .......+......+ +-..|++++|.+.+..
T Consensus 443 ---Klkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 443 ---KLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred ---HhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 9999999888887765 5544556666666665431 11 222222333344433 3455889999999888
Q ss_pred hh
Q 036198 203 VK 204 (499)
Q Consensus 203 m~ 204 (499)
++
T Consensus 516 lp 517 (933)
T KOG2114|consen 516 LP 517 (933)
T ss_pred CC
Confidence 75
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=1.3 Score=39.39 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-CcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-C-LPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~l 313 (499)
.|+..+..+ +.|++..|...|....+.... ..-....+--|..++...|++++|..+|..+.+.- - +--+..+-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 566655554 566788999999888887643 23334455567888888888888888888887641 1 1123455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.....+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777888888888888887776
No 239
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=3.4 Score=33.99 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...|...+.. +..+..++|+.-|..+.+.|... -.+..---+.......|+...|...|++.-...-.|-..-=..
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGS--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 33445444443 45567788888888888776431 1122223333455677888888888888776543333321111
Q ss_pred HH---HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 313 VL---EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 313 ll---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
-+ -.+...|.++.....++-+-..+.+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11 234567777777777777666555444555566666667788888888888777654
No 240
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.56 E-value=6 Score=36.44 Aligned_cols=131 Identities=13% Similarity=0.179 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHHcCCH
Q 036198 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCL--AG----KVEEAYKFLEEMGNKGY---PPDIVTYNCFLKVLCDNKNG 358 (499)
Q Consensus 288 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~ 358 (499)
+++...+++.|.+.|+.-+..+|-+..-.... .. ....|.++++.|++... .++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888999999998888777654333333 22 35678899999988732 2344566666554 33333
Q ss_pred ----HHHHHHHHHHHHCCCCcCh--hhHHHHHHHHHhcCC--chHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 359 ----DEALRLYGRMIEVGCWPSV--QTYNMLISMYFELGE--PDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 359 ----~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
+.++.+|+.+.+.|+..+- ...+.++..+-.... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 5677888888887876543 344444443332222 3478889999999999988877776543
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.52 E-value=7.9 Score=37.70 Aligned_cols=164 Identities=10% Similarity=0.057 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.+|.-.-+..+.+.-++.-++..+.. |+-.+.- ++-+--......++.++|++..+.|- ..+ .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-----pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g 235 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-----PDCADAY-ILLAEEEASTIVEAEELLRQAVKAGE----ASL-------G 235 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-----hhhhHHH-hhcccccccCHHHHHHHHHHHHHHHH----Hhh-------c
Confidence 34444555556666666666655543 3332211 11122234557888888888776541 111 1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHH
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
+.......-..++.+..+...|-..+-..+..++-+.|+.++|.+.+.+|.+.... -.......|+.++...+.+.++.
T Consensus 236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 11111111112222223333333444445666666788888888888888764322 23346677888888888888888
Q ss_pred HHHHHHhHCCCC-CCHHHHHHHH
Q 036198 398 ETWHEMDKRGCA-QDVDTYCVMI 419 (499)
Q Consensus 398 ~~~~~m~~~~~~-p~~~~~~~li 419 (499)
.++.+-.+...+ .-..+|+..+
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHH
Confidence 888886543221 2234566544
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.50 E-value=5.9 Score=36.23 Aligned_cols=175 Identities=15% Similarity=0.091 Sum_probs=95.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
+.|+++.|..++.+...... ..++.....+. ...||.-...+.+..+++.|...+++..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La--------------~~~yn~G~~l~~~~~~~~~a~~wL~~a~~----- 64 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELA--------------RVCYNIGKSLLSKKDKYEEAVKWLQRAYD----- 64 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHH--------------HHHHHHHHHHHHcCCChHHHHHHHHHHHH-----
Confidence 78999999999998876541 11111111111 12455555555444488888877776432
Q ss_pred hhhHHHHHHHHHHHH-HHcCCCCC-----HHHHHHHHHHHHhcCCHh---HHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 036198 211 ANTYNILGMQTLEEM-IQMGHAPD-----NFTYNTAIDTFCKARMVT---EAADLFEFMRTKGSTISSPTAKTYAIMIVA 281 (499)
Q Consensus 211 ~~~~~~la~~~~~~m-~~~g~~p~-----~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~ 281 (499)
+++.. ......|+ ..++..++.+|...+..+ +|.++++.+..... -....+..-+..
T Consensus 65 ----------~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~----~~~~~~~L~l~i 130 (278)
T PF08631_consen 65 ----------ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG----NKPEVFLLKLEI 130 (278)
T ss_pred ----------HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC----CCcHHHHHHHHH
Confidence 23221 11112223 235566777777776644 45556666655441 124555566667
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 036198 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM---CLAGKVEEAYKFLEEMGNKGYPPD 341 (499)
Q Consensus 282 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~m~~~~~~p~ 341 (499)
+.+.++.+.+.+++.+|...- ......+..++..+ .... ...|...+..+....+.|.
T Consensus 131 l~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 131 LLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 767888888888888888662 22344455555444 2222 3344455544444433333
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.49 E-value=0.27 Score=30.19 Aligned_cols=36 Identities=6% Similarity=-0.051 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
++..+..+|...|++++|.++++++.+..|..+.-+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 444555566666666666666666666555544433
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.44 E-value=3.3 Score=33.16 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 036198 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356 (499)
Q Consensus 277 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 356 (499)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+..+.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34445555555555566655555554 245555555666655543 2233333331 123333344555555556
Q ss_pred CHHHHHHHHHHH
Q 036198 357 NGDEALRLYGRM 368 (499)
Q Consensus 357 ~~~~a~~~~~~m 368 (499)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 565665555554
No 245
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.41 E-value=3.9 Score=33.80 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297 (499)
Q Consensus 218 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 297 (499)
..+++..+.+.|++|+...+..+++.+.+.|++.....++. .+ +-+|.......+-.+. +....+.++=-+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~---Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lD 83 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YH---VIPDSKPLACQLLSLG--NQYPPAYQLGLD 83 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hc---ccCCcHHHHHHHHHhH--ccChHHHHHHHH
Confidence 34556666778888888899999999999888766555554 33 3344443333332222 223444555445
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 298 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
|.++ =...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+|+-..+
T Consensus 84 MLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 84 MLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5433 0113555777788888888888888775332 223335566666677776665555555544
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.30 E-value=6.4 Score=36.01 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHhCCChHHHHHHHHHhhcC---CCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 187 LCKCGLVDYAETICKRVKNK---VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~---~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
..+.|+++.|..++.+.+.- ..|+..- .+ ....|+.-...+.+..+++.|..++++..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~--~L---------------a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAE--EL---------------ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHH--HH---------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35789999999999998752 1111110 00 1223444444444433888888877766543
Q ss_pred ----CC-CCCCCCH-----HHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 264 ----GS-TISSPTA-----KTYAIMIVALVQNDRM---EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 264 ----~~-~~~~p~~-----~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
+. ....|+. .+...++.+|...+.. ++|..+++.+.... +-...++-.-++.+.+.++.+.+.+.+
T Consensus 66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHH
Confidence 10 0022222 3445555666655553 34444555554331 122344444555555566777777777
Q ss_pred HHHHhC
Q 036198 331 EEMGNK 336 (499)
Q Consensus 331 ~~m~~~ 336 (499)
..|...
T Consensus 145 ~~mi~~ 150 (278)
T PF08631_consen 145 MRMIRS 150 (278)
T ss_pred HHHHHh
Confidence 776665
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.22 E-value=11 Score=38.52 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=163.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH-----------HHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhc
Q 036198 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----------GMQTLEEMIQM-GH-APDNFTYNTAIDTFCKA 247 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l-----------a~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~ 247 (499)
..+|+-+...+.+..|.++-..+......+...|... -..+++.+.+. +. --+..+|..+.+-...+
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 3456667777788888887776654322223333332 12222222211 11 13455677888888889
Q ss_pred CCHhHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------CCCcCHHhHHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTI-SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLE 315 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~ll~ 315 (499)
|+.+.|..+.+.=...+... .-.+..-+...+.-+..+|+.+-...++-.|... ..+.....|.-+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 99999999887432222100 0012234566677778888888888887776653 11222223332222
Q ss_pred --------HHHhcCCHHHHHHHH--HHHHhC-CCCCCHhhHHHHHHHHHHcCCHH----------HHHHHHHHHHH-CCC
Q 036198 316 --------GMCLAGKVEEAYKFL--EEMGNK-GYPPDIVTYNCFLKVLCDNKNGD----------EALRLYGRMIE-VGC 373 (499)
Q Consensus 316 --------~~~~~g~~~~a~~~~--~~m~~~-~~~p~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~~-~~~ 373 (499)
.+.+.++-..+..-| +..... -+.+-.......-+++.+..... .-+++.+.+.. .|.
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~ 680 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGG 680 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111222222222211 110000 01111222333444454443311 12223333332 233
Q ss_pred CcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036198 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453 (499)
Q Consensus 374 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 453 (499)
.....+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.+. ++.-|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3445566777777888999999999888765 4788899999999999999998887776543 25567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Q 036198 454 LMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+|.+.|+.++|.+++-+....
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh
Confidence 89999999999999998877554
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=3 Score=39.26 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=82.4
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
-.+.|.+.|++..|..-|++...-+.-+ ..+. -++... -...-..++..+.-+|.+.+++..|++.....+.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~-~~~~------~ee~~~-~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYR-RSFD------EEEQKK-AEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhcc-ccCC------HHHHHH-HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3457889999999999988864410000 0000 000000 0111234567777788888888888888888877
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HhcCCH-HHHHHHHHHHHh
Q 036198 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM-CLAGKV-EEAYKFLEEMGN 335 (499)
Q Consensus 263 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~~-~~a~~~~~~m~~ 335 (499)
.+ ++|.-..---..+|...|+++.|...|+.+++. .|+....+.=+..| .+..+. +...++|..|-.
T Consensus 286 ~~----~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 286 LD----PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cC----CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 75 567777777777788888888888888888775 45544444333333 333322 333556666543
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=5.7 Score=34.75 Aligned_cols=201 Identities=11% Similarity=0.063 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l-----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
.|.-.-.+|-...++++|...+.+..+....|...|+.- +.-+..+|.+. +--+..|+.....|..+|..+-|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchH
Confidence 466666778888899999888777665433343334333 22222222221 00112233333444444444433
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--CCcCHHhHHHHHHHHHhcCCHHHHHH
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---G--CLPDVSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
-..+++.-+ ...+.++++|+++|.+...- + ...-...|..+-+.+.+..++++|-.
T Consensus 111 AmaleKAak-------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 111 AMALEKAAK-------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHH-------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 333332221 12345566677766655421 1 01112334445566666677666655
Q ss_pred HHHHHHhC----CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 329 FLEEMGNK----GYPPD-IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG---CWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 329 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
.+.+-... .--++ -..|...|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.+|- .|+.+.+.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 44332111 11112 2345555666666778888888887755432 1134567777777764 56666665554
Q ss_pred H
Q 036198 401 H 401 (499)
Q Consensus 401 ~ 401 (499)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=3.8 Score=37.53 Aligned_cols=116 Identities=13% Similarity=-0.079 Sum_probs=53.5
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C--CCcCHHhHHHHHHHHHhcCCH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-G--CLPDVSTYKEVLEGMCLAGKV 323 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--~~~~~~~~~~ll~~~~~~g~~ 323 (499)
.|+..+|-..++++.+.- +.|..++...-.+|.-.|+.+.....++++... + ++.....-....-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d~----PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY----PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHhC----chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345555555555555542 344555555555555555555555555555432 1 111111112222233345555
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
++|++.-++..+.+. .|...-.++...+--.|+..++.+...+
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555555544432 2444444455555555555555554443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.65 E-value=3.9 Score=31.85 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=44.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCC--HHHHHHHHHHHHhCCC
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQD--VDTYCVMIDGLFDCSK 427 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~--~~~~~~li~~~~~~g~ 427 (499)
+.+..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+. |-+.. ...|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3445566666666666555431 234455666666666666666666555555443 11111 1112222223344555
Q ss_pred HHHHHHHHHHHHHCC
Q 036198 428 VEEACFLLEEVVNKG 442 (499)
Q Consensus 428 ~~~a~~~~~~m~~~~ 442 (499)
-+.|..=|+..-..|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555554
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.63 E-value=4.5 Score=36.57 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHh
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVST 309 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 309 (499)
.++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|...|+++.+ .|+.|...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 356677788888888888888888888775 56778888888888888888888888887765 467776666
Q ss_pred HHHHHHH
Q 036198 310 YKEVLEG 316 (499)
Q Consensus 310 ~~~ll~~ 316 (499)
.......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 6555444
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.32 E-value=9.5 Score=35.47 Aligned_cols=228 Identities=12% Similarity=0.036 Sum_probs=116.0
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---cCHHhHHHHHHHHHhc
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS--GCL---PDVSTYKEVLEGMCLA 320 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~~~ll~~~~~~ 320 (499)
...+.++|+..+..-..+-.+ ..--..++..+..+.++.|.+++++..--.-.+. ... .--..|..+-+++-+.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555443211 1112345556666667777766655432211110 001 1123344444555554
Q ss_pred CCHHHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcChhhHHHHHHHHHhcC
Q 036198 321 GKVEEAYKFLEEMGNK-GYPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-----CWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~ 391 (499)
-++.+++.+-..-... |..|. -....++-.++.-.+.++++++.|+...+.- ......+|..|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555444332222 22221 1223345556666677788888877765421 1123457777888888888
Q ss_pred CchHHHHHHHHHhH----CCCCCCHHHHHH-----HHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDK----RGCAQDVDTYCV-----MIDGLFDCSKVEEACFLLEEVVN----KGLKLP-YRKFDSYLMQL 457 (499)
Q Consensus 392 ~~~~a~~~~~~m~~----~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~ 457 (499)
++++|.-+.....+ .++.--...|.. |.-++...|+.-.|.+..++..+ .|-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 88887776665433 222211122222 33345566776666666665443 342211 23344556777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 036198 458 SVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~ 474 (499)
...|+.+.|+.-++...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 77888887776665543
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.32 E-value=6.8 Score=33.82 Aligned_cols=229 Identities=18% Similarity=0.112 Sum_probs=131.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
.+....+...+......... ......+......+...+.+..+...+...... ........+......+...+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLPN--SDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc--ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 34555555555555554310 012456666666777777777777777666542 223445555566666666677777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CcChhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 326 AYKFLEEMGNKGYPPDIVTYNCFLK-VLCDNKNGDEALRLYGRMIEVGC--WPSVQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+..
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 114 ALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 777777766543332 112222222 56677777777777777754221 11233333444445666777777777777
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 403 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
............+..+-..+...++++.|...+......... ....+..+...+...|..+.+...+.+..+..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 766421113456666666777777777777777777665422 2344444444455666677777777777666553
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=3.6 Score=38.76 Aligned_cols=106 Identities=9% Similarity=-0.096 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
-.+.|.+.|++..|..-|++....-. |.+.-+.++..... ..-..++..+.-+|.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~----------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLE----------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLK 269 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhh----------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHh
Confidence 34568889999999999888654210 00000001110000 0112234445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+++.+|++.-...+..+. +|....-.=..++...|+++.|+..|+.+.+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555555555555554432 2444444444555555555555555555555
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.05 E-value=12 Score=36.00 Aligned_cols=270 Identities=9% Similarity=0.076 Sum_probs=142.0
Q ss_pred HHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 186 ALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
.+-+.+++.+|.++|.++.+....+.+.+. ....-+.++++|.- .+.+..........+..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lk-----------------eEvl~grilnAffl-~nld~Me~~l~~l~~~~- 75 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLK-----------------EEVLGGRILNAFFL-NNLDLMEKQLMELRQQF- 75 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHH-----------------HHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-
Confidence 345789999999999998654222222211 12223455566553 34455555555554432
Q ss_pred CCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHc--CCCc------------CHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 266 TISSPTAKTYAIMIVA--LVQNDRMEECFSLLGHMINS--GCLP------------DVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 266 ~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
| ...|-.+..+ +-+.+++.+|.+.+....+. +..| |-..=+..++++...|++.++..+
T Consensus 76 ----~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 76 ----G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred ----C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 2 2233333333 23566777777777666544 2221 111124456677778888888877
Q ss_pred HHHHHhC----CCCCCHhhHHHHHHHHHHcC--------C-------HHHHHHHHHHHHHC------CCCcChhhHHHHH
Q 036198 330 LEEMGNK----GYPPDIVTYNCFLKVLCDNK--------N-------GDEALRLYGRMIEV------GCWPSVQTYNMLI 384 (499)
Q Consensus 330 ~~~m~~~----~~~p~~~~~~~li~~~~~~g--------~-------~~~a~~~~~~m~~~------~~~~~~~~~~~li 384 (499)
++++... ....+..+|+.++-.+.++= . ++.+.-..++|... .+.|-...+..++
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHH
Confidence 7776554 23367777777555444321 1 12222222233211 2334445555555
Q ss_pred HHHHhcC--CchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHH
Q 036198 385 SMYFELG--EPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL----PYRKFDSYLMQL 457 (499)
Q Consensus 385 ~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~ 457 (499)
....-.. ...--.+++..-...-+.|+.. ....++..+.+ +.+++..+.+.+....+.+ =..+|..++...
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5443321 2222233333333334556543 23344444444 4566665555544332211 245788889999
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.+.++..+|.+.+.-+.-..|...
T Consensus 309 Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred HHHHhHHHHHHHHHHHHhcCCcch
Confidence 999999999999988877665544
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.85 E-value=5.6 Score=31.79 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.-.....+.|++++|.+.|+.+..+-.. .+-...+--.++.+|.+.+++++|...+++.++..-.-...-|...+.+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344455678888888888888776432 223345566677788888888888888888777643222345555566655
Q ss_pred hcCC
Q 036198 319 LAGK 322 (499)
Q Consensus 319 ~~g~ 322 (499)
....
T Consensus 94 ~~~~ 97 (142)
T PF13512_consen 94 YYEQ 97 (142)
T ss_pred HHHH
Confidence 4443
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.84 E-value=6.5 Score=32.51 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKN 357 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~ 357 (499)
+.+.+.+++|+...|..++..+.+.|+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444444444
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.83 E-value=0.45 Score=29.20 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~ 214 (499)
.++..+...|.+.|++++|.++|++..+..|.|...|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 3677889999999999999999999987655444444
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.67 E-value=3.2 Score=34.96 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
..+..+...|++.|+.+.|.+.|.++.+.... ...-...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667788888888888888888888776521 122245566777777888888887777766654
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.54 E-value=2.4 Score=38.22 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
..++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444455555555555555555555444322 44445555555555555555555554443
No 262
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.42 E-value=15 Score=35.91 Aligned_cols=177 Identities=11% Similarity=0.007 Sum_probs=106.8
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 383 (499)
..|....-+++..+..+-.+.-++.+-.+|...| -+...|..++..|... ..+.-..+++++.+..+ +......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4455566667777777777777777777777654 3566777777777666 55667777777776543 33333333
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCA-----QDVDTYCVMIDGLFDCSKVEEACFLLEEVVN-KGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~ 457 (499)
+..+...++.+.+..+|..+...-++ .-...|..++.. -..+.+....+..+... .|...-...+.-+..-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33333347777777777766543111 011234444442 13456666666666653 34444556666666777
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
....++++|.+++..+.+...+..+.+-.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 777888888888887777666665544433
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.30 E-value=15 Score=36.11 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChH
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 194 (499)
..-.+.+++-+- +.|..+.|+++..+- ..-.+...+.|+++
T Consensus 295 ~~~~~~i~~fL~----~~G~~e~AL~~~~D~-----------------------------------~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 295 KDQGQSIARFLE----KKGYPELALQFVTDP-----------------------------------DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHHHHHHHH----HTT-HHHHHHHSS-H-----------------------------------HHHHHHHHHCT-HH
T ss_pred hhHHHHHHHHHH----HCCCHHHHHhhcCCh-----------------------------------HHHhHHHHhcCCHH
Confidence 445777777777 888888888874332 12334566778888
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHH
Q 036198 195 YAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274 (499)
Q Consensus 195 ~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~ 274 (499)
.|.++-++. .+...|..|.....+.|+++-|++.|.+.. -
T Consensus 336 ~A~~~a~~~----------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------------d 375 (443)
T PF04053_consen 336 IALEIAKEL----------------------------DDPEKWKQLGDEALRQGNIELAEECYQKAK------------D 375 (443)
T ss_dssp HHHHHCCCC----------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------
T ss_pred HHHHHHHhc----------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------------C
Confidence 887764332 366678888888888888888888887543 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
|..++-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++.+-
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45566677777887777777777776662 444555566667777777666543
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=91.20 E-value=15 Score=35.59 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=79.7
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 326 (499)
....+|.++-++..+.+ +-|..+...+..+....++.+.|..+|++....+ || ..+|...--.+.-.|+.++|
T Consensus 318 ~~~~~a~~~A~rAveld----~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 318 LAAQKALELLDYVSDIT----TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHH
Confidence 34567888888888876 5577888788887788888999999999998874 44 44555555566778999999
Q ss_pred HHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 327 YKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 327 ~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+.+++..+.... .-.......+..|+. ...+.|.++|.+-.+
T Consensus 392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 392 RICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhccc
Confidence 9999996665321 112223333445554 456777777765443
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=9.9 Score=33.34 Aligned_cols=206 Identities=17% Similarity=0.126 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...|.....+|..+.++++|...+.+..+-. +-+...|.+ ...++.|.-+.++|.+. .--...|+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y----EnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKA 97 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY----ENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH----HhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 3456667778888899999988777765421 112222211 22244555555555443 1123345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH---CC--CCcChhhHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE---VG--CWPSVQTYNMLISMYF 388 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~~~~~~~~~~li~~~~ 388 (499)
...|..+|.++.|-..+++.-+. ...-++++|+++|++... .+ ...-...+...-..+.
T Consensus 98 s~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 66677777666665555543221 122334444444444321 10 0011123333444455
Q ss_pred hcCCchHHHHHHHHHhHC----CCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc
Q 036198 389 ELGEPDGAFETWHEMDKR----GCAQDV-DTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~ 460 (499)
+...+++|-..+.+-... .--++. ..|-..|-.+....++..|...+++--.. .-.-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 555555554444332110 011111 22344444455556666677666653222 1122455666666655 34
Q ss_pred CCHHHHHHH
Q 036198 461 GDLGAIHKL 469 (499)
Q Consensus 461 g~~~~a~~~ 469 (499)
||.+.+.++
T Consensus 241 gD~E~~~kv 249 (308)
T KOG1585|consen 241 GDIEEIKKV 249 (308)
T ss_pred CCHHHHHHH
Confidence 666655544
No 266
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.94 E-value=14 Score=34.77 Aligned_cols=232 Identities=12% Similarity=0.021 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHH--HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 231 APDNFTYNTAIDTF--CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 231 ~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
..|..-.-.++.+- .-.|++++|.+-|+.|.... +--..-...|.-.--+.|+.+.|.++-+..-... +--..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP----EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP----ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh----HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 33444444444332 34567777777777765421 0011111222222234566666666665554432 22244
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHh--hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcChh-hHH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPDIV--TYNCFLKVLCD---NKNGDEALRLYGRMIEVGCWPSVQ-TYN 381 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~-~~~ 381 (499)
.....+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+ +.||.. .--
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 56667777777777777777776654432 223321 12222222211 1234444444433333 344433 223
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK-GLKL-PYRKFDSYLMQLSV 459 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~ 459 (499)
.-..++.+.|+..++-.+++.+=+. .|....+...++ .+.|+ .+..-+++.... .++| +....-.+.++-..
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~~--ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYVR--ARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHHH--hcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 3445677888888888888887665 344444433332 35554 233333322211 1223 35556666777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 036198 460 IGDLGAIHKLSDHMRK 475 (499)
Q Consensus 460 ~g~~~~a~~~~~~m~~ 475 (499)
.|++..|..--+...+
T Consensus 342 a~e~~~ARa~Aeaa~r 357 (531)
T COG3898 342 AGEFSAARAKAEAAAR 357 (531)
T ss_pred ccchHHHHHHHHHHhh
Confidence 8887766655444443
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=13 Score=33.69 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=78.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
......|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~----~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA----PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC----cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 44566777777888777777664 23455666677777778888888877777654321122222222233333333
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcChhhHHHHHHHHHhcCCch
Q 036198 322 KVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~ 394 (499)
...+...+-...-.. | |...-..+...+...|+.+.|.+.+-.+.+.. -.-|...-..++..+.--|..+
T Consensus 218 ~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 218 ATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred cCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 333333333333322 3 44444555566666777777766555554431 1233444455555555445333
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.56 E-value=7 Score=30.55 Aligned_cols=92 Identities=17% Similarity=0.068 Sum_probs=65.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH---HHHHHH
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE---VLEGMC 318 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~ 318 (499)
-+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+..-.-+...... -...|-
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 45678889999999998887763 45678888888888888999988888888776532223333222 223455
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 036198 319 LAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~ 337 (499)
..|+.+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6777888877777766655
No 269
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.32 E-value=3.7 Score=37.23 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcCHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGST-------ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG---CLPDVS 308 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~ 308 (499)
.|.++|.....|+.-....-.+-..|.. ..+.+..+...++..-....+++.+...+-.+.... ..|+..
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~ 103 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT 103 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc
Confidence 3556666666666544444233322200 023334445555555555667777777777666431 122222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+ ..++. +-.-++++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 104 ~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 104 IH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22 22222 333456677777777777788888888888888888888888877777666543
No 270
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=18 Score=34.43 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=104.0
Q ss_pred CCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 232 PDNFTYNTA-IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV--ALVQNDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 232 p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
|.-.+|..+ ..++.-.|+.++|.++--...+.. ..+ .+...++ ++--.++.+.+...|++-+..+ |+-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld----~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~ 237 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD----ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQ 237 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc----cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhh
Confidence 333444333 245667788888888877777664 222 3333443 3344677888888888877653 4433
Q ss_pred hHHHH-------------HHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 309 TYKEV-------------LEGMCLAGKVEEAYKFLEEMGNK---GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 309 ~~~~l-------------l~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
.-..+ -+-..+.|.+..|.+.+.+.+.. +..|+...|-....+..+.|+.++|+.--++..+..
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 22221 13356788999999999887664 445566667777777888899999988888776632
Q ss_pred CCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 373 CWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 373 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+. ...|..-..++.-.++|++|.+-++...+.
T Consensus 318 --~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 318 --SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 112233334455667888888888877654
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=14 Score=33.37 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=75.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.....|+..+|..+|+........ +...--.+..+|...|+.+.|..++..+-..--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566666666666666554322 2344555666666777777777777665432211122222233444444455554
Q ss_pred HHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 036198 396 AFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 396 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g 461 (499)
...+-...... | |...--.+...+...|+.++|.+.+-.+..+ |.. |...-..++..+.--|
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 45554444443 3 4455555666667777777777666555543 332 4445555555555444
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.96 E-value=0.63 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhh
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (499)
+|+.|.+.|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999853
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=16 Score=33.71 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=78.3
Q ss_pred HhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 036198 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267 (499)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (499)
--.|++.+|-..++++.+..|. |...+.-.=++|...|..+.-...++++...-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-----------------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--- 167 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-----------------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--- 167 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-----------------------hhhhhhhhhhHHHhccchhhhhhHHHHhcccc---
Confidence 3468888888888888765333 44444555555666666666666666655541
Q ss_pred CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC
Q 036198 268 SSPTAKTY----AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---GYPP 340 (499)
Q Consensus 268 ~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p 340 (499)
.++...| ...--++...|-+++|++.-++..+.+ +.|...-.+..+.+--.|+..++.++..+-... +--.
T Consensus 168 -n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ml 245 (491)
T KOG2610|consen 168 -NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWML 245 (491)
T ss_pred -CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHH
Confidence 2222211 222223345566666666666655543 344555555555666666666666655432211 0000
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
-..-|-...-.+...+.++.|+.+|+.
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 011122222233444666666666654
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.91 E-value=25 Score=35.91 Aligned_cols=181 Identities=13% Similarity=0.039 Sum_probs=82.5
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHH-------cCCCcCHHhHHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIV----A-LVQNDRMEECFSLLGHMIN-------SGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~----~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~ 317 (499)
...|.++++...+.|. ...-..+.. + +....+.+.|+.+|....+ .| .......+-.+|
T Consensus 228 ~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 4567777777777662 222222222 2 3345677777777777765 33 222344445555
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH--h
Q 036198 318 CLAG-----KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD-NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF--E 389 (499)
Q Consensus 318 ~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~ 389 (499)
.+.. +.+.|..++...-..|.+ +....-..+..... ..+...|.++|....+.|. +...-+.+++.... -
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 4432 445566666665555432 33222222211111 1345566666666666553 12221211111111 1
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 443 (499)
..+...|..++++..+.| .|...--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 224555666666666555 2221111122222222 555555555555555543
No 275
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.89 E-value=6.3 Score=29.24 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 415 YCVMIDGLFDCSKVE--EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 415 ~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
|..--..|....+.+ +..+-++.+....+.|++....+.++||.+.+++..|.++++.++..-+
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 333333444433333 4555566666667777888888888888888888888888877775433
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.74 E-value=14 Score=32.76 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
.|+. ...-.+.|++++|.+.|+.+..+... .+-...+--.++-++-+.++++.|...+++..+.--.-...-|..-|.
T Consensus 37 LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 37 LYNE-GLTELQKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444 34445789999999999999987543 234456677778888999999999999999987632223344555555
Q ss_pred HHH
Q 036198 316 GMC 318 (499)
Q Consensus 316 ~~~ 318 (499)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 555
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.70 E-value=0.85 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.65 E-value=22 Score=34.85 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYLMQ 456 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~ 456 (499)
+-..+..++-+.|+.++|.+.+++|.+.. ..-+......|+.++...+++.++..++.+..+...+.+ ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33556667778999999999999997642 222445677899999999999999999999865443222 3355555544
Q ss_pred HHhcCCH---------------HHHHHHHHHHHhhcCh
Q 036198 457 LSVIGDL---------------GAIHKLSDHMRKFYNP 479 (499)
Q Consensus 457 ~~~~g~~---------------~~a~~~~~~m~~~~~~ 479 (499)
+...|+. ..|.+.+.+..+.++-
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3334431 2345666666665444
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.61 E-value=26 Score=35.75 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=150.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCCHhHHHHHHHHHHH-------cCCCCCCCCHHHHHHHHHHHHHcC-
Q 036198 218 GMQTLEEMIQMGHAPDNFTYNTAI--DT-FCKARMVTEAADLFEFMRT-------KGSTISSPTAKTYAIMIVALVQND- 286 (499)
Q Consensus 218 a~~~~~~m~~~g~~p~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~p~~~~~~~ll~~~~~~~- 286 (499)
+.++++...+.|.. ........+ .+ ++...+.+.|+.+|+...+ .+ ......-+..+|.+..
T Consensus 231 a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~------~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 231 AFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG------LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred HHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc------CCccccHHHHHHhcCCC
Confidence 56666666666653 222222222 23 4567789999999999977 43 3346667777887743
Q ss_pred ----CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--HcCCHH
Q 036198 287 ----RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL-AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC--DNKNGD 359 (499)
Q Consensus 287 ----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~ 359 (499)
+.+.|..++....+.| .|+...+-..+..... ..+...|.++|...-+.|.. ...-+.+++.... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 6778999999998887 3455444333333333 35678999999999988854 2222222222222 344788
Q ss_pred HHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH---Hh----CCCHHHHH
Q 036198 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL---FD----CSKVEEAC 432 (499)
Q Consensus 360 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~----~g~~~~a~ 432 (499)
.|..++++..+.| .|...--...+..+.. +..+.+.-.+..+.+.|.......-..++... .. ..+...+.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999999988 3443333334444444 88888888888887776442211111111111 11 22566777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhc
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVI----GDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~~ 477 (499)
.++......| +......+.+.|... .+.+.|...+...-...
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 7777777776 566666777777654 24667777777666554
No 280
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.51 E-value=16 Score=33.09 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=32.4
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 365 (499)
.++..+...+++.+++.+++.+..++++..... +..-|...|..+|....+.|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 445555555555555555555555555554433 33445555555555555555544444333
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.48 E-value=3.6 Score=34.64 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLKLPYRKFDS 452 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ 452 (499)
..+..+...|++.|+.+.|.+.+.++.+....+. ...+-.+|+...-.+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3555666666666666666666666665533322 234445556666666666666665554432 21112111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHhhc
Q 036198 453 YLM--QLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 453 ll~--~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
... ++...+++..|-+.|-.....+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 111 2344566776666665555444
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.46 E-value=1.6 Score=39.51 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CCCChhhHHHH----------HHHHHHHHHHcCCCCCHHHH
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK----VKPNANTYNIL----------GMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~p~~~~~~~l----------a~~~~~~m~~~g~~p~~~~~ 237 (499)
|.+.+..+-..++..-....+++++...+-+++.. ..|+...+..+ ++-++..-++.|+-||..++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhH
Confidence 34455555666666666677888888887777652 33444333333 55555666677888888888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~ 264 (499)
+.+|+.+.+.+++.+|.++.-.|..+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888887777776665543
No 283
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.38 E-value=9.8 Score=30.54 Aligned_cols=109 Identities=8% Similarity=0.105 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCC
Q 036198 212 NTYNILGMQTLEEMIQMGHAPDNF--TYNTAIDTFCKARMVTEAADLFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDR 287 (499)
Q Consensus 212 ~~~~~la~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~ 287 (499)
.+|.....+....|.+.+..++.. ..|.++.-....+.+.....+++.+..-.... ...+...|++++.+.++..-
T Consensus 15 ~~w~~fi~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsS 94 (145)
T PF13762_consen 15 EVWKTFINSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSS 94 (145)
T ss_pred HHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChH
Confidence 333333444445555555555543 34666666666666666666666653211000 01233455566665544443
Q ss_pred -HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 036198 288 -MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320 (499)
Q Consensus 288 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 320 (499)
---+..+|+-|.+.+.+++..-|..++.++.+-
T Consensus 95 aK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 95 AKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 334455555555555555566666666555443
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.16 E-value=3.4 Score=30.24 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+.=++.+-++.+....+.|++....+.++||.+.+|+..|.++++.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445666677777777788888888888888888888888888887773
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.08 E-value=4.5 Score=29.62 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=46.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
..+.|+..+..+.+++|-+.+++.-|.++|+-++.++..+...|..+..++=--+.+.|+.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l~ELGI~ 96 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKPTLKELGIS 96 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHHHHHCCC
Confidence 3578999999999999999999999999999998765555556666655555555555553
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.89 E-value=0.81 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
+-.+..++.+.|++++|.+.++++.+.+|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 335567778888899999998888888775
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.76 E-value=4.3 Score=30.07 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=42.2
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCC
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH 230 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~ 230 (499)
....+.|+..+..+.+++|-+.+++..|.++|+-++.++.+....|..+..++=--+.+.|+
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkPtl~ELGI 98 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKPTLEELGI 98 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHHHHHHT-
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhhHHHHhCC
Confidence 44567899999999999999999999999999999886555554666554444444444555
No 288
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.49 E-value=15 Score=31.55 Aligned_cols=204 Identities=17% Similarity=0.074 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTK-GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
....+......+...+.+..+...+...... . .......+......+...+.+..+...+.........+ .....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 133 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELEL---LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEA 133 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHH
Confidence 3567778888899999999999999888753 1 34566777788888888888999999999988764333 22222
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 312 EVLE-GMCLAGKVEEAYKFLEEMGNKGY--PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 312 ~ll~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
.... .+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+.
T Consensus 134 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 134 LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 2333 78999999999999999855321 12334444445556778999999999999887542114677888888889
Q ss_pred hcCCchHHHHHHHHHhHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
..++.+.|...+...... .|+ ...+..+...+...+..+++...+.+.....
T Consensus 214 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 214 KLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999998875 333 3445555555557778999999988887664
No 289
>PHA02875 ankyrin repeat protein; Provisional
Probab=87.74 E-value=27 Score=34.03 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=9.1
Q ss_pred HHHHhCCChHHHHHHHH
Q 036198 185 DALCKCGLVDYAETICK 201 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~ 201 (499)
...+..|+.+-+..+++
T Consensus 7 ~~A~~~g~~~iv~~Ll~ 23 (413)
T PHA02875 7 CDAILFGELDIARRLLD 23 (413)
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 34455666665555543
No 290
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.71 E-value=21 Score=32.28 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHhhcC-CCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036198 172 KTQPEINALNLLLDALCKC-GLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 249 (499)
+..-|..-|-..++..-.- -.++++.++....+.+ ++...+.|.--..+.++.+ -..+++...+.|.++|.
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~l-------y~kllgkva~~yle~g~ 294 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQL-------YMKLLGKVARAYLEAGK 294 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHH-------HHHHHHHHHHHHHHcCC
Confidence 3455666677776665433 4567777777776654 2223333321111111111 12234556677888888
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
+.+|.++.+....-+ +.+...+-.++..+...|+--.+.+-++.+.
T Consensus 295 ~neAi~l~qr~ltld----pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 295 PNEAIQLHQRALTLD----PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 888888888877764 5677777888888888888666666666654
No 291
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=33 Score=36.58 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
|..|+..|...|+.++|+++|.+..+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 567777788888888888888777663
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.87 E-value=2.3 Score=24.00 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+|..+..+|...|++++|...+++..+..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455566666666666666666666665544
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.41 E-value=17 Score=30.04 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=20.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
..|.++.....++-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 344444444444433333222222223333344444455555554444443
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.17 E-value=2.4 Score=23.83 Aligned_cols=30 Identities=3% Similarity=-0.046 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+..+..++...|++++|.+.+++..+..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 445556666666666666666666665544
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.10 E-value=35 Score=32.28 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=44.1
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ---DVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
....+|..+.+.+.+.|.++.|...+..+...+... .+...-.-...+...|+..+|...+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577778888888888888888888877643111 233344445556667888888887777665
No 296
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.46 E-value=8.4 Score=37.14 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=43.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 353 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
...|+++.+.+.+...... +.....+..++++...+.|++++|..+-..|....++ +..........--..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3456666666555544332 2233445555666666666666666666665554443 2222222222222345556666
Q ss_pred HHHHHHHHCC
Q 036198 433 FLLEEVVNKG 442 (499)
Q Consensus 433 ~~~~~m~~~~ 442 (499)
..+++.....
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 6665555443
No 297
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.00 E-value=38 Score=31.77 Aligned_cols=166 Identities=13% Similarity=0.030 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHh
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINS-GCLP---DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-----YPPDIV 343 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~ 343 (499)
..|-.+-+++.+..++.+++.+-..-... |..| ......++-.++...+.++++++.|+...+.. ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34444455555555555555554433322 2112 11223345566666777777777777654431 112234
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcChhhH-----HHHHHHHHhcCCchHHHHHHHHHhH----CCCCC
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIE----VGCWPSVQTY-----NMLISMYFELGEPDGAFETWHEMDK----RGCAQ 410 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p 410 (499)
+|..|-..|.+..++++|.-+.....+ .++.--...| -.|.-++-..|.+..|.+.-++..+ .|-++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777777777887777665554432 2221111122 2233455666777777766665433 23221
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 411 -DVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 411 -~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
-......+.+.|...|+.+.|+.-+++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223344556666777777776666543
No 298
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.88 E-value=50 Score=32.41 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=60.2
Q ss_pred cChhhH-HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH-CCCCCCHHHH
Q 036198 375 PSVQTY-NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF--DCSKVEEACFLLEEVVN-KGLKLPYRKF 450 (499)
Q Consensus 375 ~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~-~~~~p~~~~~ 450 (499)
|+..|+ +.++..+-+.|...+|..++..+... .+|+...|..+|..=. .+-+..-+..+++.|.. .| -|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444444 45566666677777777777777665 3456666666665321 12236666777777664 35 466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
...+.--...|..+.+-.++.+..+.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHh
Confidence 66666666777777766665555443
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.74 E-value=3.5 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666667777777777776666554
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.57 E-value=1.9 Score=24.69 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 036198 446 PYRKFDSYLMQLSVIGDLGAIH 467 (499)
Q Consensus 446 ~~~~~~~ll~~~~~~g~~~~a~ 467 (499)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666666666666666654
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.12 E-value=30 Score=29.47 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=62.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC-HHHHHHHHHHHHh
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPS----VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD-VDTYCVMIDGLFD 424 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 424 (499)
+-+.+.|++++|..-|.+..+.-.... ...|..-..++.+.+.++.|++--....+.+ |+ ......-..+|-+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 446788999999999999887532111 2345555566778888888888777777653 31 1222233446778
Q ss_pred CCCHHHHHHHHHHHHHCC
Q 036198 425 CSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 425 ~g~~~~a~~~~~~m~~~~ 442 (499)
...+++|+.=|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888999999999988775
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.00 E-value=3.8 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.062 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 448 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.+++.+...|...|++++|..++++..+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456667777777777777777777666543
No 303
>PRK09687 putative lyase; Provisional
Probab=81.67 E-value=42 Score=30.70 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHhcCCH----hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCC
Q 036198 233 DNFTYNTAIDTFCKARMV----TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR-----MEECFSLLGHMINSGC 303 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 303 (499)
|...-...+.+++..|+. +++...+..+.... ++..+-...+.++...+. ...+...+.....
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D-----~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--- 138 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED-----KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF--- 138 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---
Confidence 455555566666766653 45666666654332 455555555555554432 1223333333332
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK-NGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
.++..+-...+.++++.++. .+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-..
T Consensus 139 D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~ 211 (280)
T PRK09687 139 DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIE 211 (280)
T ss_pred CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHH
Confidence 23555555666777777763 445555554443 34445555555555442 23345555555543 245666666
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
.+.++.+.++. .|...+-...+.+ + .....+.++...|.. +|...+..+.+.. ||...-...+.+|.
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 77777777663 4444444444432 2 233566666677764 5666666666543 36555555555553
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.53 E-value=32 Score=29.20 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=62.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC-----VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
+...+...|++++|+.-++..... |....+. .|.+.....|.+++|+.+++...+.++. ......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 344567778888888887766543 2222232 3445566778888888888777655532 22333445777
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
...|+-++|..-|++..+.......+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~~~~~ 196 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASPAARE 196 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCChHHHH
Confidence 888888888888888887764444443
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.29 E-value=4.9 Score=22.57 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666654
No 306
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.12 E-value=43 Score=30.43 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHH-cC-CHHHHHHHHHHHHH-CCCCcChhhHHHHHHHHHhcCCchHHHH
Q 036198 323 VEEAYKFLEEMGN-KGYPPDIVTYNCFLKVLCD-NK-NGDEALRLYGRMIE-VGCWPSVQTYNMLISMYFELGEPDGAFE 398 (499)
Q Consensus 323 ~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 398 (499)
+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555666653222 2244466666777766655 22 22222333333332 2355777888888888999999999888
Q ss_pred HHHHHhHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHH
Q 036198 399 TWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEACFLLEE-----VVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 399 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~~~~ 458 (499)
+|...... +..-|...|..+|......|+..-..++..+ ++..|+..+...-..+-+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88877655 5566778889999998899988777666654 234566666666555544443
No 307
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.79 E-value=0.56 Score=37.89 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
.++..+.+.+.++.+..+++.+...+...+....+.++..|++.+..++..++++.. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 456777778888888888888887665567788888999999888878888877721 1123356777778888
Q ss_pred CHHHHHHHHHHHH
Q 036198 427 KVEEACFLLEEVV 439 (499)
Q Consensus 427 ~~~~a~~~~~~m~ 439 (499)
.+++|..++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8888888877653
No 308
>PRK11906 transcriptional regulator; Provisional
Probab=80.64 E-value=59 Score=31.74 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHH--HHHHHHHHhcC-----CHhHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q 036198 235 FTY--NTAIDTFCKAR-----MVTEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQ---------NDRMEECFSLLGH 297 (499)
Q Consensus 235 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~ 297 (499)
..| ..++++..... ..+.|+.+|.+...... ..|+ ...|..+-.++.. ..+..+|.++-+.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455 55666655422 25678888888873221 2333 3344333332221 1223444555555
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 298 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
..+.+ +.|......+..+....++.+.|...|++....+.. ...+|....-.+.-.|+.++|.+.+++..+
T Consensus 330 Aveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 330 VSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55443 334455555555555555566666666665544321 222232223333345666666666655444
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.38 E-value=26 Score=35.11 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=45.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
.+.|+++.|.++..+. -+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3445555555444331 2444555555555555555555555544332 233444444445544444
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036198 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435 (499)
Q Consensus 398 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 435 (499)
.+-...++.|. .|.-.-+|...|+++++.+++
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 44444443332 133333444555555555554
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.26 E-value=0.62 Score=37.61 Aligned_cols=128 Identities=12% Similarity=0.075 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
++..+.+.+.++.+..+++.+...+...+....+.++..|++.+..+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5677777888888999999998777666788899999999999888888888771 222333566777777787
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
+++|.-++.++.... ..+..+...++++.|.+++.+. ++...|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 777777666643321 1111122334455555333222 457788888877776654
No 311
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.57 E-value=68 Score=31.24 Aligned_cols=152 Identities=10% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGM 317 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~ 317 (499)
.+...++.|+.+.+..+++.-.... ...+... .+.+...+..|+. ++++.+.+.|..|+... -...+...
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A 142 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDLGKFAD---DVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLA 142 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCccc---ccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 3555566777766555553211100 0000011 1223334455554 34444555565554322 12344555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh---HHHHHHHHHhcC
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT---YNMLISMYFELG 391 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~ 391 (499)
+..|+.+.+.-++ +.|..++ ..-.+.+. ..+..|+.+- .+.+.+.|..++... ...++...+..|
T Consensus 143 ~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~ 213 (413)
T PHA02875 143 VMMGDIKGIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENN 213 (413)
T ss_pred HHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcC
Confidence 5667765544443 3333322 22223333 3344566543 334445555444322 123344334555
Q ss_pred CchHHHHHHHHHhHCCCCCCH
Q 036198 392 EPDGAFETWHEMDKRGCAQDV 412 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~ 412 (499)
+.+ +.+.+.+.|..++.
T Consensus 214 ~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 214 KID----IVRLFIKRGADCNI 230 (413)
T ss_pred CHH----HHHHHHHCCcCcch
Confidence 543 44444555655553
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.37 E-value=3.5 Score=23.55 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEEC 291 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a 291 (499)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444443
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.26 E-value=50 Score=29.54 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=24.6
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
.++++|+.-|++..+.........-.+.-.++....+.+++++....|.+|.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3455666666665554321111112233344555555555555555555543
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.21 E-value=7 Score=21.77 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
.|..+...+.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455666666666666666666666554
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.15 E-value=7.1 Score=21.82 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+|..+...|...|++++|.+.|++..+..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666777777777777777777766544
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.58 E-value=38 Score=27.76 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=23.0
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
.+.++.+++..++..+.--.. ..|...++.. ..+...|+|.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP--~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP--EFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC--CchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555544321 0111222222 2233555555555555555433
No 317
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.20 E-value=37 Score=30.61 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.=|.+++..++|.+++.+.-+.-+.- -+....+...-|-.|.+.+.+..+.++-....+..-.-+...|..+...|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~p---EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVP---EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCc---ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34788999999999988876665543 233455666777788899999999988888876532233444777666554
Q ss_pred -----hcCCHHHHHHHH
Q 036198 319 -----LAGKVEEAYKFL 330 (499)
Q Consensus 319 -----~~g~~~~a~~~~ 330 (499)
=.|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 469999998887
No 318
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.09 E-value=15 Score=31.41 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=39.8
Q ss_pred hCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 424 DCSKVEEACFLLEEVVNK-GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
..++.+......+.+.+. ...|++.+|..++.++...|+.++|.+..+++...|+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445544444443333321 3468899999999999999999999999999999888
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.85 E-value=22 Score=30.72 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS--GCLPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l 313 (499)
|.+..++.+.+.+...+|+...++-.+.. +.+..+-..++..++-.|+|++|..-++-.-+. ...+-..+|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak----Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK----PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC----CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 44556677778888888888877776654 345566667778888888888887766655443 123334556666
Q ss_pred HHH
Q 036198 314 LEG 316 (499)
Q Consensus 314 l~~ 316 (499)
+++
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 554
No 320
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.82 E-value=28 Score=27.04 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=48.5
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
....+.|+..+....++++-+.+++..|..+|+-++.++.+.-..|..+..++-.-+.+.|++
T Consensus 76 ~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~elkpvl~ELGI~ 138 (149)
T KOG4077|consen 76 FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKELKPVLNELGIP 138 (149)
T ss_pred hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 344678999999999999999999999999999999876666556665555554444555654
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.64 E-value=82 Score=31.15 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
|.....+++..++...++.-++.+..+|...| .+-..|-.++.+|..+ ..++-..+|+++.+.. -+.....-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-----e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~R 136 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGR 136 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHH
Confidence 45556677777777777777888888887765 3566777778888777 5567777777777764 23333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcChhhHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPP-----DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSVQTYNMLISM 386 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~ 386 (499)
-+--+...++.+.+..+|.....+-++. =...|.-+.... ..+.+....+...+... |...-...+.-+-.-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3333444477777777777665542210 012343333321 34556666666665542 333445556666667
Q ss_pred HHhcCCchHHHHHHHHHhHC
Q 036198 387 YFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~ 406 (499)
|....++++|.+++..+.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 77777888888887766654
No 322
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.50 E-value=1.1e+02 Score=32.53 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=124.7
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCcCHHhHHH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTA-------KTYAIMIV-ALVQNDRMEECFSLLGHMINS----GCLPDVSTYKE 312 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~-------~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ 312 (499)
....++++|..+..+....- ..|+. ..|+.+-. .....|++++|.++-+..... -..+....+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l---~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFL---KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHccChHHHHHHHHHHHHHh---CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 45678999999988877653 12221 23333333 234578899999888777653 22344556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH---HHHH--HHHHHcCCH--HHHHHHHHHHHHC-----C-CCcChhh
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY---NCFL--KVLCDNKNG--DEALRLYGRMIEV-----G-CWPSVQT 379 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li--~~~~~~g~~--~~a~~~~~~m~~~-----~-~~~~~~~ 379 (499)
+..+..-.|++++|..+..+..+..-.-+...+ ..+. ..+..+|+. .+.+..|...... . ..+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 778888899999999988776554222344333 3332 224456633 3333344433321 1 0122345
Q ss_pred HHHHHHHHHhcC-CchHHHHHHHHHhHCCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCC----CCHHHHHH
Q 036198 380 YNMLISMYFELG-EPDGAFETWHEMDKRGCAQDVDTYC--VMIDGLFDCSKVEEACFLLEEVVNKGLK----LPYRKFDS 452 (499)
Q Consensus 380 ~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~ 452 (499)
+..+..++.+.. ...++..-+.-.......|-..... .|+......|+.++|...+.++...... ++...-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 566666665521 1112222222222222223333333 6677788899999999999988765332 33333333
Q ss_pred HHHH--HHhcCCHHHHHHHHHH
Q 036198 453 YLMQ--LSVIGDLGAIHKLSDH 472 (499)
Q Consensus 453 ll~~--~~~~g~~~~a~~~~~~ 472 (499)
.+.. ....||.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3322 3456888888777666
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.19 E-value=1.3e+02 Score=33.19 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHhCC--ChHHHHHHHHHhhc
Q 036198 174 QPEINALNLLLDALCKCG--LVDYAETICKRVKN 205 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 205 (499)
.|+ .....+|..|.+.+ .++.|++...++..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 55667888898887 77788777766653
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.82 E-value=47 Score=29.97 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--
Q 036198 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC-- 353 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-- 353 (499)
..=|.+++..++|.+++...-+--+.--+.........|-.|.+.+.+..+.++-..-.+..-.-+...|.++...|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 345778899999999988776665543334455666677779999999999999888776533334455777776665
Q ss_pred ---HcCCHHHHHHHH
Q 036198 354 ---DNKNGDEALRLY 365 (499)
Q Consensus 354 ---~~g~~~~a~~~~ 365 (499)
=.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 479999998887
No 325
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.78 E-value=40 Score=27.13 Aligned_cols=83 Identities=7% Similarity=0.044 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCC-----CCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRG-----CAQDVDTYCVMIDGLFDCSK-VEEACFLLEEVVNKGLKLPYRKFDSY 453 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 453 (499)
.+.++...+..++......+++.+.... -..+...|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555555555555555442210 01244567778777766555 33456677777777777888888888
Q ss_pred HHHHHhcCC
Q 036198 454 LMQLSVIGD 462 (499)
Q Consensus 454 l~~~~~~g~ 462 (499)
+.++.+.-.
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 887776533
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.32 E-value=8.4 Score=23.64 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=16.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+..+|...|+.+.|.++++++.+.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 45566666666666666666664433
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.95 E-value=1.1e+02 Score=31.78 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=89.2
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcCHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHh
Q 036198 274 TYAIMIVALV-QNDRMEECFSLLGHMINSGCLPDVS-----TYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPPDIV 343 (499)
Q Consensus 274 ~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~ 343 (499)
++--+...+. ...+++.|+..+.+.....-.++-. .-..+++.+.+.+... |...+++..+. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3444444444 4667777777777654332222211 1223456666666555 77777665443 2222223
Q ss_pred hHHHH-HHHHHHcCCHHHHHHHHHHHHHCC---CCcChhhHHHHHHHHHh--cCCchHHHHHHHHHhHCC---------C
Q 036198 344 TYNCF-LKVLCDNKNGDEALRLYGRMIEVG---CWPSVQTYNMLISMYFE--LGEPDGAFETWHEMDKRG---------C 408 (499)
Q Consensus 344 ~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~---------~ 408 (499)
.+.-+ +..+...+++..|.+.++.+...- ..|-..++..++.+... .+..+++.+..+.+.... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 223333478888888888776432 23445555556555543 345566777666663221 2
Q ss_pred CCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHH
Q 036198 409 AQDVDTYCVMIDGLF--DCSKVEEACFLLEEVV 439 (499)
Q Consensus 409 ~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 439 (499)
.|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567777776554 5777777766665553
No 328
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.30 E-value=47 Score=27.24 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 036198 317 MCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~ 336 (499)
+...|++++|..+|+++.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34445555555555554433
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.25 E-value=1.3e+02 Score=32.12 Aligned_cols=198 Identities=13% Similarity=0.054 Sum_probs=112.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHH-------hHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 036198 283 VQNDRMEECFSLLGHMINSGCLPDVS-------TYKEVLE-GMCLAGKVEEAYKFLEEMGNK----GYPPDIVTYNCFLK 350 (499)
Q Consensus 283 ~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~ 350 (499)
....++.+|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678999999998887542222221 2232222 234568899999888776543 23345667778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcChhhH---HHH--HHHHHhcCC--chHHHHHHHHHhHC--CC----CCCHHHHHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTY---NML--ISMYFELGE--PDGAFETWHEMDKR--GC----AQDVDTYCV 417 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~l--i~~~~~~~~--~~~a~~~~~~m~~~--~~----~p~~~~~~~ 417 (499)
+..-.|++++|..+.++..+..-.-+...+ ..+ ...+..+|+ ..+.+..|...... +- .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999998877654222233322 222 223455663 33333344433322 11 122344555
Q ss_pred HHHHHHhC-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 418 MIDGLFDC-SKVEEACFLLEEVVNKGLKLPYRKF--DSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 418 li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
+..++.+. +...++..-+.--......|-..-+ ..+.......|+.++|...+.++.......
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 55555541 2222222223222223222222222 256788889999999999999998765554
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.90 E-value=1.2e+02 Score=31.60 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=107.1
Q ss_pred HHHHHHHhhcCCCCCCC--HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 98 AFRFFMWAGHQDNYAHE--PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 98 a~~~f~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
|++..+.+.++..++|. ..++-.+...+.. ...+++.|+..+.+....... ... .. .
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~---eT~n~~~Ae~~L~k~~~l~~~-~~~---~d--------------~ 98 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLE---ETENLDLAETYLEKAILLCER-HRL---TD--------------L 98 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccc-cch---HH--------------H
Confidence 44555544444444443 3455555666664 567899999999876544311 000 00 0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHhHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA-IDTFCKARMVTEAA 254 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~ 254 (499)
-......++..+.+.+... |....++..+. ....+..+=...|.-+ +..+...+++..|.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~------------------~~~~~~~~w~~~frll~~~l~~~~~d~~~Al 159 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIED------------------SETYGHSAWYYAFRLLKIQLALQHKDYNAAL 159 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH------------------HhccCchhHHHHHHHHHHHHHHhcccHHHHH
Confidence 0112334556666666555 87777765431 1122222233334333 33333347899999
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcC---------CCcCHHhHHHHHHHHH--hcC
Q 036198 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQ--NDRMEECFSLLGHMINSG---------CLPDVSTYKEVLEGMC--LAG 321 (499)
Q Consensus 255 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~--~~g 321 (499)
+.++.+.........|-..++..++.+... .+..+++.+..+.+.... ..|...+|..+++.++ ..|
T Consensus 160 ~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~ 239 (608)
T PF10345_consen 160 ENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQG 239 (608)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 999887764321124555666666666554 455666777776664321 2345667777777654 567
Q ss_pred CHHHHHHHHHHH
Q 036198 322 KVEEAYKFLEEM 333 (499)
Q Consensus 322 ~~~~a~~~~~~m 333 (499)
+++.+.+.++++
T Consensus 240 ~~~~~~~~L~~l 251 (608)
T PF10345_consen 240 DVKNSKQKLKQL 251 (608)
T ss_pred CHHHHHHHHHHH
Confidence 776776665554
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.59 E-value=95 Score=30.41 Aligned_cols=126 Identities=14% Similarity=0.084 Sum_probs=87.0
Q ss_pred HHHHHHhcCCHhHHHH-HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 240 AIDTFCKARMVTEAAD-LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 240 li~~~~~~g~~~~a~~-~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
-|.--...|++-.|-+ +|..+.... ..|+.....+ ......|+++.+.+.+...... +.....+..++++...
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~---~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQ---QDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCC---CCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhh
Confidence 3444455677666554 455554443 3455444333 3456789999999988777643 3456778889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
+.|++++|..+-.-|....+. +..............|-++++...|+++...+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999999887665 45544444444456688899999999887644
No 332
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.34 E-value=1.2e+02 Score=31.50 Aligned_cols=89 Identities=19% Similarity=0.145 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcChhhHHHHHHHHHhc-
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFEL- 390 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~- 390 (499)
....+.-.|+++.|.+.+-. ..+...+.+++.+.+..|. -+......-..+.... -.|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g---LL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG---LLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC---CCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 44666778999999988877 2223345555555554442 2222111113332211 112225677888888763
Q ss_pred --CCchHHHHHHHHHhHC
Q 036198 391 --GEPDGAFETWHEMDKR 406 (499)
Q Consensus 391 --~~~~~a~~~~~~m~~~ 406 (499)
.+..+|.+.+-.+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 5677788888777654
No 333
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=72.79 E-value=77 Score=29.03 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=15.9
Q ss_pred HhhHHHHHHHHHHcCCHHHHH
Q 036198 342 IVTYNCFLKVLCDNKNGDEAL 362 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~ 362 (499)
..+|..|+.++|.+|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 457888888888888877543
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.68 E-value=31 Score=29.85 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--GYPPDIVTYNCFLKVL 352 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~ 352 (499)
.+..++.+.+.+.+.+++....+-.+.+ +.|..+-..++..+|-.|++++|..-++-.-+. ...+....|..+|.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4455677778888888888888777764 445556667888889999999888766654433 2334556777777654
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.46 E-value=73 Score=28.59 Aligned_cols=180 Identities=11% Similarity=0.141 Sum_probs=109.3
Q ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036198 218 GMQTLEEMIQMGHAPD---NFTYNTAIDTFCKARMVTEAADLFEFMRTKGST--ISSPTAKTYAIMIVALVQNDRMEECF 292 (499)
Q Consensus 218 a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~ 292 (499)
|+.-|+...+..-... .-..-.++....+.|++++..+.+.++..--.. .-.-+..+.|.+++.-..+.+.+-..
T Consensus 46 Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ 125 (440)
T KOG1464|consen 46 ALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQ 125 (440)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHH
Confidence 6667777765432222 234456788889999999999999999863100 01234567788888777777776666
Q ss_pred HHHHHHHHc-CCCcCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCC-------HhhHHHHHHHHHHcC
Q 036198 293 SLLGHMINS-GCLPDV----STYKEVLEGMCLAGKVEEAYKFLEEMGNKGY----PPD-------IVTYNCFLKVLCDNK 356 (499)
Q Consensus 293 ~~~~~m~~~-~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----~p~-------~~~~~~li~~~~~~g 356 (499)
..|+.-.+. .-..+. .|-+.|...|...|.+.+..++++++...-- .-| ...|..=|..|..+.
T Consensus 126 ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qK 205 (440)
T KOG1464|consen 126 EFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQK 205 (440)
T ss_pred HHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhc
Confidence 665543321 001122 2234566778888888888888888765411 111 345777788888888
Q ss_pred CHHHHHHHHHHHHHCC-CCcChhhHHHHHHHH-----HhcCCchHHHH
Q 036198 357 NGDEALRLYGRMIEVG-CWPSVQTYNMLISMY-----FELGEPDGAFE 398 (499)
Q Consensus 357 ~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~-----~~~~~~~~a~~ 398 (499)
+-.....+|++..... --|.+.... +|+-| .+.|.+++|..
T Consensus 206 nNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 206 NNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 8888888888766432 224444333 33433 34567776643
No 336
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=72.35 E-value=79 Score=28.96 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHH-HHHHhcCC-HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 036198 229 GHAPDNFTYNTAI-DTFCKARM-VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306 (499)
Q Consensus 229 g~~p~~~~~~~li-~~~~~~g~-~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 306 (499)
|.. +...++.|. ..+.+.|- ..-|.++|+...... ..+.++..+.+.+.-+.-.++ ++|+
T Consensus 161 Gt~-~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek---------~i~~lis~Lrkg~md~rLmef--------fPpn 222 (412)
T KOG2297|consen 161 GTL-PATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK---------DINDLISSLRKGKMDDRLMEF--------FPPN 222 (412)
T ss_pred CCC-CHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc---------cHHHHHHHHHhcChHhHHHHh--------cCCc
Confidence 444 334444444 33444443 334666776665433 234555555444333333322 3666
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH-HHHHHCCCCcChh----hHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY-GRMIEVGCWPSVQ----TYN 381 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~~~~~----~~~ 381 (499)
..+-......+...|--+-..-.-.++-. | .-...-..|..-..+...+++..... ++|.+.++ |+.. .|.
T Consensus 223 krs~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs 298 (412)
T KOG2297|consen 223 KRSVEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWS 298 (412)
T ss_pred chhHHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHh
Confidence 65555555555544422211111000000 0 00011122223333334455554444 34555554 5543 556
Q ss_pred HHHHHHHhcCCch-HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 382 MLISMYFELGEPD-GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 382 ~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
.+|++---+.+-+ -|.+.++.+ .+|..|+.+++..|+.+-.
T Consensus 299 ~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 299 GIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHH
Confidence 6665533221111 133333333 3688888888888876644
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.43 E-value=12 Score=34.53 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 428 (499)
+-|.++|.+++|...|..-... .| +.+++..-..+|.+...+..|+.=-......+ ..-...|+.-..+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4588889999999988876653 35 77888888888888888877766555544321 00112233333333334455
Q ss_pred HHHHHHHHHHHHC
Q 036198 429 EEACFLLEEVVNK 441 (499)
Q Consensus 429 ~~a~~~~~~m~~~ 441 (499)
.+|.+-++..++.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 5555555554443
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.35 E-value=6.6 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 036198 451 DSYLMQLSVIGDLGAIHKLSD 471 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~ 471 (499)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555566666666655543
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.33 E-value=57 Score=32.85 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=67.6
Q ss_pred HHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 186 ALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
...+.|+++.|.++..+.. +..-|..|.++...+|++..|.+.|....+
T Consensus 646 lal~lgrl~iA~~la~e~~----------------------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--- 694 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN----------------------------SEVKWRQLGDAALSAGELPLASECFLRARD--- 694 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc----------------------------chHHHHHHHHHHhhcccchhHHHHHHhhcc---
Confidence 4456778888877765542 455677888888888888888888876543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 266 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
|..|+-.+...|+-+....+-....+.|. - |...-+|...|+++++.+++.+-.
T Consensus 695 ---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 695 ---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhcC
Confidence 33455666667776666666666666652 2 223345667788888887776543
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.95 E-value=84 Score=28.66 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=24.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
.+.|..+|.+.+|.++.+...... +.+...+-.++..+...||--.|.+-++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 334444555555555555444432 33444444455555555554444444433
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.90 E-value=11 Score=23.22 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=14.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 418 MIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3455556666666666666655443
No 342
>PRK09687 putative lyase; Provisional
Probab=70.45 E-value=87 Score=28.67 Aligned_cols=228 Identities=11% Similarity=-0.002 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCcCH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM----EECFSLLGHMINSGCLPDV 307 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~~~~ 307 (499)
+|.......+.++...|.. ++...+..+... +|...-...+.++...|+. .++...+..+... .++.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~------~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS------KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC------CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 5777777888888888863 344444444433 3566666777777887763 5677777777443 4677
Q ss_pred HhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 308 STYKEVLEGMCLAGKV-----EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
.+-...+.+++..+.. ..+.+.+...... ++..+-...+.++.+.++. .+...+-.+.+. +|...-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHH
Confidence 7777777777766432 2334444333332 3666667778888888774 566666666653 45556666
Q ss_pred HHHHHHhcC-CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036198 383 LISMYFELG-EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 383 li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 461 (499)
.+.++.+.+ +...+...+..+... ++...-...+.++.+.|+. .|...+-+..+.+. .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcC
Confidence 666666653 244666666666643 5777888889999999884 56666666655532 2347888999999
Q ss_pred CHHHHHHHHHHHHhhcChhHHHHH
Q 036198 462 DLGAIHKLSDHMRKFYNPVIARRL 485 (499)
Q Consensus 462 ~~~~a~~~~~~m~~~~~~~~~~~~ 485 (499)
+. +|...+..+.+.++.......
T Consensus 250 ~~-~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred CH-hHHHHHHHHHhhCCChhHHHH
Confidence 96 688888888875554443333
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.38 E-value=14 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555566666666666655544
No 344
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.96 E-value=20 Score=22.46 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=22.3
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 455 (499)
.+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777777777666654
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.81 E-value=51 Score=25.72 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
+..+-++.....++.|++.....-++||.+.+|+..|.++++-++..-++.-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k 118 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQK 118 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHH
Confidence 4455566666778888888888888999999999999888888886554443
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.35 E-value=73 Score=27.31 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHHC---CCCcChhhHHHHHHHHHhcCCchHH
Q 036198 355 NKNGDEALRLYGRMIEV---GCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
..+.+++..++.+..+. +-.+|...+..|...|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444555544444331 1134445555555555555555444
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.40 E-value=62 Score=26.17 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=9.0
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 036198 318 CLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~ 336 (499)
...|++++|..+|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3444455555555444443
No 348
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.29 E-value=1.1e+02 Score=28.89 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=47.7
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP---DIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 305 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
....++..+.+.+.+.|.++.|...+..+...+... .+...-.-....-..|+.++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667778888888999999998888887754222 334444456666778888888888888776
No 349
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.83 E-value=13 Score=24.87 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=8.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH
Q 036198 417 VMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m 438 (499)
.+|.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444433
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.09 E-value=24 Score=24.84 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=27.8
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 424 DCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
..++.++|+..+...++.-..+. -.++..++.+++..|+++++.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777766665543322 235566667777777766665553
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.87 E-value=1.5e+02 Score=32.00 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcCHHhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHhhHHH-
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSG---CLPDVSTYKEVLEGMCLAGKV--EEAYKFLEEMGNKGYPPDIVTYNC- 347 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~- 347 (499)
-|..|+..|...|..++|+++|.+..+.. -.--...+..+++-+.+.+.. +-+++.-+...+....-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 57889999999999999999999998732 111122233355555555544 555555444444321111111111
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 348 -----------FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 348 -----------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
-+-.|......+-+..+++.+....-.++....+.++.-|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 2345667778888899999988776667777778888877653
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.59 E-value=3.1e+02 Score=33.14 Aligned_cols=65 Identities=9% Similarity=-0.142 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+|-...+....+|.++.|...+-...+.+ .| ..+--...-....|+...|..+++...+.+-+.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 467777777777899999987776666655 22 344455566778899999999999988665554
No 353
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.43 E-value=1.1e+02 Score=27.85 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 036198 381 NMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~ 402 (499)
.-++..+.+.|.+.+|..++..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 4456666667777776665543
No 354
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=63.20 E-value=1.5e+02 Score=28.81 Aligned_cols=150 Identities=15% Similarity=0.058 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA 247 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 247 (499)
.|-.+..|...|+..+|.+..+++....--+...-..+ .+.++.+-...| ...-..+..++.+.
T Consensus 217 In~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~g----lissSq~~kGfsr~ 292 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEG----LISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhc----chhhhccccCchhh
Confidence 56778888889999888888887765322222222222 222222222222 22223344444443
Q ss_pred CC--------HhHHHHHHHHHHHcCCCC------------CCC----CH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 248 RM--------VTEAADLFEFMRTKGSTI------------SSP----TA----KTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 248 g~--------~~~a~~~~~~m~~~~~~~------------~~p----~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
+. +..|...|+.+..+.... ..| |. .....+|+-|..+|+..+..+.++++-
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcC
Confidence 32 345566666554322100 000 11 234567888888888888877777554
Q ss_pred HcCCCcCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 036198 300 NSGCLPDVSTYKEVLEGMC--LAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~ 335 (499)
.- .-++.....++.... +...-+.|-.++..+.-
T Consensus 373 ~~--E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~ 408 (645)
T KOG0403|consen 373 LP--EYNPGFLKLLITLALDRKNSEKEMASVLLSDLHG 408 (645)
T ss_pred Cc--cccchHHHHHHHHHhccchhHHHHHHHHHHHhhc
Confidence 32 223333333333222 33334555555555543
No 355
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.65 E-value=46 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=13.6
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
+..+...++.-.|.++++.+.+.+...+..|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3333444444445555555544443333333
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.57 E-value=1e+02 Score=26.39 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=58.7
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 036198 185 DALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 264 (499)
+-+.+.|++++|.+-|....+.+++...- .-...|..-..++.+.+.++.|++-.....+.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e------------------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTE------------------ERSILYSNRAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHH------------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 35677888888888888776643332110 123455555667778888888887777776655
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 265 STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 265 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+....+.---..+|.+...+++|+.=|..+.+.
T Consensus 165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 111222222234666677777777777777765
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.84 E-value=89 Score=25.32 Aligned_cols=54 Identities=11% Similarity=0.197 Sum_probs=40.1
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 302 (499)
...++.+++..+++.|.--.. -.+...++... .+...|+|++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP--~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRP--NLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--CccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 458999999999999987542 12333444333 4568999999999999998874
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.44 E-value=15 Score=19.21 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 450 FDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+..+...+...|+++.|...++...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444445555555555555544443
No 359
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=60.00 E-value=2.8e+02 Score=30.82 Aligned_cols=133 Identities=20% Similarity=0.086 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 036198 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM----CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353 (499)
Q Consensus 278 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 353 (499)
.++.-.+.|.+.+|+.++ .|+...+..+..+| .....+++|--.|+..-+. .-.+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333334455555555444 35555554444333 3455566665555543221 22456667
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcChh--hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWPSVQ--TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
.+|++.+|+.+..++... .|.. +-..|+.-+...++.-+|-++..+.... ....+..|++...+++|
T Consensus 977 ~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHH
Confidence 777777777777766532 2222 2255667777778888887777776553 34455566666777777
Q ss_pred HHHHHHH
Q 036198 432 CFLLEEV 438 (499)
Q Consensus 432 ~~~~~~m 438 (499)
..+....
T Consensus 1046 lrva~~~ 1052 (1265)
T KOG1920|consen 1046 LRVASKA 1052 (1265)
T ss_pred HHHHHhc
Confidence 7766544
No 360
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=58.43 E-value=73 Score=31.07 Aligned_cols=174 Identities=16% Similarity=0.251 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC---CCHhhHHHHHHHH----
Q 036198 286 DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK------GYP---PDIVTYNCFLKVL---- 352 (499)
Q Consensus 286 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~---p~~~~~~~li~~~---- 352 (499)
+.+++-.++++.+.+.| .+| ....-+++|.+.+++++|...+++-.+. |++ ....+..-++...
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 45788888999988876 233 4445679999999999999999887663 222 1222333344332
Q ss_pred -HHcCCHHHHHHHHHHHHHCCCCcC---hhhHHHHHHHHHhcCCchHHHHHHHHH-------hHCCCCCCHHHHHHHHHH
Q 036198 353 -CDNKNGDEALRLYGRMIEVGCWPS---VQTYNMLISMYFELGEPDGAFETWHEM-------DKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 353 -~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m-------~~~~~~p~~~~~~~li~~ 421 (499)
.+.| ...+..+++-+...|+... ..+||. -|.+.=-++++..-|+.+ .+.|+..|..+|..|...
T Consensus 145 QvRHG-tpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgt 220 (480)
T TIGR01503 145 QIRHG-TPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGT 220 (480)
T ss_pred eccCC-CCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCC
Confidence 1222 2346677777777665432 334442 244444555555555433 456777787777755433
Q ss_pred HHhCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH
Q 036198 422 LFDCSKVEEACFLLEEVV--NKGLKLPYRKFDSYLMQLSVIGDLGA---IHKLSDHMR 474 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~--~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~ 474 (499)
++= -.+.-|..+++-+. ++|++ ++--+|...|+... |...++++.
T Consensus 221 LvP-Psisiav~ilE~Lla~eqGVk-------sisvgy~Q~Gn~~QDiaai~aL~~l~ 270 (480)
T TIGR01503 221 LVP-PSISNAIGIIEGLLAAEQGVK-------NITVGYGQVGNLTQDIAALRALEEQT 270 (480)
T ss_pred ccC-hHHHHHHHHHHHHHHHHcCCe-------EEEeccccCCChHHHHHHHHHHHHHH
Confidence 321 23456777777665 56765 23335666776553 444444443
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.73 E-value=70 Score=23.12 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHHH
Q 036198 426 SKVEEACFLLEEVV 439 (499)
Q Consensus 426 g~~~~a~~~~~~m~ 439 (499)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 362
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.58 E-value=28 Score=29.68 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=45.7
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcC
Q 036198 91 FQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNN 149 (499)
Q Consensus 91 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~ 149 (499)
...++.....+.+|..+-....|++..|..++.++. ..|+.++|..+.+++..--
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~----~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALA----LLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC
Confidence 445555667777787777778899999999999999 9999999999999987654
No 363
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.49 E-value=47 Score=20.77 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 286 DRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 286 ~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
|-..++..++++|.+.|+..+...|.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33333444444444444433333333
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.43 E-value=36 Score=24.01 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=27.8
Q ss_pred hcCCchHHHHHHHHHhHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHH
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQDV--DTYCVMIDGLFDCSKVEEACFL 434 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~ 434 (499)
..++.++|+..|....+.-..|.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766654322221 3556667777777777776655
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.27 E-value=74 Score=22.99 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 360 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
.+.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| |+ .|..++.++...|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 35567777777775 344444444433346688888999999888 53 33 6888888888887765554
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.14 E-value=83 Score=23.50 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.3
Q ss_pred hcCCchHHHHH
Q 036198 389 ELGEPDGAFET 399 (499)
Q Consensus 389 ~~~~~~~a~~~ 399 (499)
+.|++++|..+
T Consensus 51 NrG~Yq~Al~l 61 (115)
T TIGR02508 51 NRGDYQSALQL 61 (115)
T ss_pred ccchHHHHHHh
Confidence 33444444333
No 367
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.75 E-value=1.8e+02 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 036198 286 DRMEECFSLLGHMINSGCLP 305 (499)
Q Consensus 286 ~~~~~a~~~~~~m~~~~~~~ 305 (499)
++.+....++..+.+.+..|
T Consensus 36 ~~~~~~e~l~~~Ird~~Map 55 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP 55 (393)
T ss_pred cCHHHHHHHHHHHHhcccch
Confidence 35555666666666665443
No 368
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.74 E-value=1.8e+02 Score=27.01 Aligned_cols=152 Identities=12% Similarity=0.058 Sum_probs=83.8
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 314 LEGMCLAGK---VEEAYKFLEEMGNKGY----PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 314 l~~~~~~g~---~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
+...| |+ .+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... ++...-..++.+
T Consensus 136 ~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~a 210 (324)
T PF11838_consen 136 LSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSA 210 (324)
T ss_dssp HHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHH
T ss_pred HHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHh
Confidence 44445 54 4577788888776422 345555666777777788866655665555543 466777888899
Q ss_pred HHhcCCchHHHHHHHHHhHCC-CCCCHHHHHHHHHHHHhCCC--HHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHh
Q 036198 387 YFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSK--VEEACFLLEE----VVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
.+...+.+...++++.....+ +++.. . ..++.++...+. .+.+.+++.. +.+ .+..+......++..+..
T Consensus 211 La~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 211 LACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HTT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCCT
T ss_pred hhccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhc
Confidence 888889888889999888754 44333 3 444445543333 3666666543 322 222233255555554433
Q ss_pred ----cCCHHHHHHHHHHH
Q 036198 460 ----IGDLGAIHKLSDHM 473 (499)
Q Consensus 460 ----~g~~~~a~~~~~~m 473 (499)
....++..++++.-
T Consensus 288 ~~~t~~~~~~~~~f~~~~ 305 (324)
T PF11838_consen 288 NFSTEEQLDELEEFFEDK 305 (324)
T ss_dssp T--SHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhhC
Confidence 33344444444433
No 369
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.28 E-value=2e+02 Score=27.46 Aligned_cols=102 Identities=14% Similarity=-0.057 Sum_probs=72.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHC---C---CCCCHHHHHHHHH
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEVVNK---G---LKLPYRKFDSYLM 455 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~---~---~~p~~~~~~~ll~ 455 (499)
.|..+.+.|-+..|.++.+-+......-|+.....+|+.|+ ++++++-..++.+..... . .-| ...|+..+
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP-n~a~S~aL- 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP-NFAFSIAL- 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc-cHHHHHHH-
Confidence 35567889999999999999988765557777777888876 778888888888876552 1 122 34554444
Q ss_pred HHHhcCCH---------------HHHHHHHHHHHhhcChhHHHHHH
Q 036198 456 QLSVIGDL---------------GAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 456 ~~~~~g~~---------------~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
|+...++. +.|.+.+.+....+|-....-..
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455555 88999999988888776654443
No 370
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.45 E-value=2.8e+02 Score=28.85 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGM 317 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~ 317 (499)
.....+.-.|+++.|.+.+-+. .+ ...+..++...+..|.-.+-.+... ..+.... -.|...-+..||..|
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~~--~~---~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYRN--EF---NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T----HHHHHHHHHHHHHTT---------------------------HHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhh--cc---CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHH
Confidence 4456666678888888877661 11 3445666665555443332222211 2222111 112225677788888
Q ss_pred Hhc---CCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHH-----------HHHHHHHH-CCCCc-ChhhH
Q 036198 318 CLA---GKVEEAYKFLEEMGNKGYPPDIVTY-NCFLKVLCDNKNGDEAL-----------RLYGRMIE-VGCWP-SVQTY 380 (499)
Q Consensus 318 ~~~---g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~-----------~~~~~m~~-~~~~~-~~~~~ 380 (499)
++. .++.+|.+.+--+....-+.....+ .++-......++++.-+ -++++-.. .++.. .....
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~ 414 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLR 414 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHH
Confidence 763 5788888888777654321112222 22222223333222211 11111000 01111 22222
Q ss_pred ---HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHH-HHHhCCC-----------HHHHHHHHHHHHHCCC--
Q 036198 381 ---NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID-GLFDCSK-----------VEEACFLLEEVVNKGL-- 443 (499)
Q Consensus 381 ---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~-----------~~~a~~~~~~m~~~~~-- 443 (499)
.....-+...|++++|..+|+...+.. .-....|.++. +...... ...|..+.+.....+.
T Consensus 415 ~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~ 492 (613)
T PF04097_consen 415 EIIEQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHIS 492 (613)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchH
Confidence 233334566788888888888765420 01112332222 2222222 3445555554443321
Q ss_pred ---C-CCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 036198 444 ---K-LPYRKFDSYLM-----QLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 444 ---~-p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~m~ 474 (499)
. -...|+..|++ .+...|+++.|.+.++++.
T Consensus 493 ~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 493 SKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 1 12345555543 3467899999999888875
No 371
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.23 E-value=1.4e+02 Score=25.36 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCcCHH----hHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 268 SSPTAKTYAIMIVALVQNDR----MEECFSLLGHMINSGCLPDVS----TYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 268 ~~p~~~~~~~ll~~~~~~~~----~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
..++.+.++-++..+.+..- ++-+..+=.+....+..++-. ....=+..|-+.|||.+.-.+|-..
T Consensus 4 m~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 4 MVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred ccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 56777888888777766443 344444444444444443322 2222344566666766655555444
No 372
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=52.97 E-value=1e+02 Score=28.81 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=38.6
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
.+-|.++|.+++|+..|..-.. ..| +.+++..-..+|.+...+..|+.=......
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia------------------------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA------------------------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc------------------------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999987543 234 666677777777777777766655555443
No 373
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.71 E-value=1.4e+02 Score=27.57 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=15.8
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
....-...+..+...|++..|.+++.+..+
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334444455555555666666655555443
No 374
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=52.66 E-value=2.7e+02 Score=28.30 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
.|-..|..-...+++.....++++..+
T Consensus 153 lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 153 LWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 344444444555555555555555554
No 375
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.58 E-value=2e+02 Score=26.91 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHh-
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY--AIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVST- 309 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~- 309 (499)
..++...-+.++.++|+++++++.+.-...-.|+...| ..+.+.+...|+..++.+++++..+ .|++|++++
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34455556667899999999998775332245666655 4455667788999999999999887 577776554
Q ss_pred HHHHHHHH-HhcCCHHHH
Q 036198 310 YKEVLEGM-CLAGKVEEA 326 (499)
Q Consensus 310 ~~~ll~~~-~~~g~~~~a 326 (499)
|..+-.-| -..|++..+
T Consensus 159 fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 44444433 344555443
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.61 E-value=40 Score=22.49 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.++++.++++.+.... =|..---.++.+|...|++++|.++++++.+..
T Consensus 5 ~~~~~~~~~~~lR~~R--HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 5 QLEELEELIDSLRAQR--HDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp -HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455566666655432 244455678899999999999999999987753
No 377
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=51.52 E-value=1.7e+02 Score=25.59 Aligned_cols=66 Identities=8% Similarity=-0.164 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCH-------HHHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 416 CVMIDGLFDCSKV-------EEACFLLEEVVNKGLKL----P-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 416 ~~li~~~~~~g~~-------~~a~~~~~~m~~~~~~p----~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
-.+...|-..|+. ..|.+.|.+..+..-.| + ......+.....+.|+.++|.+.|.++........
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3344445555553 34555555554432111 1 22333444566778888888888888877655544
No 378
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.11 E-value=1.7e+02 Score=29.11 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=14.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 036198 181 NLLLDALCKCGLVDYAETICKR 202 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~ 202 (499)
.+.+...++.|+.+-+..+++.
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll~~ 57 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILLDN 57 (480)
T ss_pred chhhhhhhccCCHHHHHHHHHc
Confidence 3455566777887776666643
No 379
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.80 E-value=34 Score=31.26 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 036198 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444 (499)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 444 (499)
|+.-|..-.+.|++++|+.++++.+..|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 335555555555555555555555555544
No 380
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=50.47 E-value=1e+02 Score=22.99 Aligned_cols=85 Identities=9% Similarity=0.011 Sum_probs=57.7
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 471 (499)
..++|..+-+.+...+-. ....--+-+..+...|++++|..+.+.+ ..||...|-++- -.+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 345666666666554321 2222223345677899999999998776 478988887763 467888888888888
Q ss_pred HHHhhcChhHHH
Q 036198 472 HMRKFYNPVIAR 483 (499)
Q Consensus 472 ~m~~~~~~~~~~ 483 (499)
+|...+.|.+..
T Consensus 93 rla~sg~p~lq~ 104 (115)
T TIGR02508 93 RLAASGDPRLQT 104 (115)
T ss_pred HHHhCCCHHHHH
Confidence 888877775543
No 381
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.45 E-value=1.3e+02 Score=25.53 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=45.6
Q ss_pred HHHhcCCchHHHHHHHHHhHC--CCCCCHHHHHHHHH-HHHhCCC--HHHHHHHHHHHHHCCCCCCHH-------HH-HH
Q 036198 386 MYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMID-GLFDCSK--VEEACFLLEEVVNKGLKLPYR-------KF-DS 452 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~~~~~p~~~-------~~-~~ 452 (499)
.....|++++|.+-++++.+. .++--...|..+.. +++..+. +-+|..++.-..+.++ |++. .| ..
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL~V~~~~YilG 116 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEELGVPPIAYILG 116 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHcCCCHHHHHHH
Confidence 345566677776666665432 11112223444443 4555443 3455555555443322 2222 11 11
Q ss_pred HH----------HHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 453 YL----------MQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 453 ll----------~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+. --..+.|+++.|.++++-|.+.|.
T Consensus 117 l~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~ 152 (204)
T COG2178 117 LADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYE 152 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 11 122456888888888888887543
No 382
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.05 E-value=1.1e+02 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
-|..++..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888887766
No 383
>PRK10292 hypothetical protein; Provisional
Probab=49.88 E-value=75 Score=21.16 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 191 GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
|+..++..+|.+|..- +-++.-.|...|.+|......-+++....++..+......+.|
T Consensus 2 ~n~~~~d~lY~EmCRV-----------VGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 2 GNRTKEDELYREMCRV-----------VGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred CchHHHHHHHHHHHHH-----------HHHHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 4556677777777652 3355667888899999888888887766666654444333333
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.46 E-value=2e+02 Score=25.97 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=16.4
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~ 365 (499)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4556667777788888887777555
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.12 E-value=1.6e+02 Score=30.28 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 277 IMIVALVQNDRMEECFSLLGHMINS--GCLPDVSTYKEVLEGMCLAGKVE------EAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 277 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
+++.+|..+|++..+.++++.+... |-+.-...||..++...+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999999888764 33334567788888888888654 3334444333 44577888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 036198 349 LKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~ 369 (499)
+.+-..--+-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776544333233333444443
No 386
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.41 E-value=94 Score=25.89 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=43.3
Q ss_pred HHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 368 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556776665444 4445555556677889999999888877777777777788888876543
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=47.91 E-value=2.6e+02 Score=26.78 Aligned_cols=147 Identities=8% Similarity=0.066 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCh
Q 036198 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211 (499)
Q Consensus 132 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 211 (499)
...+.++...|......+ +...+..+++. .+--+.++-.+-..+...|+.+.|.++.++..--
T Consensus 7 s~~Y~~~q~~F~~~v~~~----Dp~~l~~ll~~--------~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----- 69 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH----DPNALINLLQK--------NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----- 69 (360)
T ss_pred CHHHHHHHHHHHHHHHcc----CHHHHHHHHHH--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Confidence 345566666666666543 44444444443 3456788888999999999999998888875310
Q ss_pred hhHHHHHHHHHHHHH---Hc-------CCCCCHHHHHH---HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 036198 212 NTYNILGMQTLEEMI---QM-------GHAPDNFTYNT---AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278 (499)
Q Consensus 212 ~~~~~la~~~~~~m~---~~-------g~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 278 (499)
+.......|.... .. ...-|...|-+ .|..+.+.|.+..|+++.+-+..-+ ..-|....-.+
T Consensus 70 --~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd---p~~DP~g~ll~ 144 (360)
T PF04910_consen 70 --FERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD---PDEDPLGVLLF 144 (360)
T ss_pred --HHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCCcchhHHH
Confidence 0000000011000 00 11123344433 3567888999999999999988876 22366666667
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHH
Q 036198 279 IVALV-QNDRMEECFSLLGHMIN 300 (499)
Q Consensus 279 l~~~~-~~~~~~~a~~~~~~m~~ 300 (499)
|+.|+ +.++++--.++++....
T Consensus 145 ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 145 IDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCCHHHHHHHHHhHhh
Confidence 77664 56777777777776554
No 388
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.72 E-value=18 Score=28.40 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 036198 429 EEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~p~ 446 (499)
..|..+|..|++.|-+||
T Consensus 112 ~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CcHHHHHHHHHhCCCCCc
Confidence 344455555555554444
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.65 E-value=1.2e+02 Score=31.22 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCcChhhHHHHHHHHHhcCCchH------HHHHHHHHhHCCCCCCHHHHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEV--GCWPSVQTYNMLISMYFELGEPDG------AFETWHEMDKRGCAQDVDTYCVM 418 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~m~~~~~~p~~~~~~~l 418 (499)
+|+.+|...|++..+.++++..... |-+.-...||..|+...+.|.++- |.+.++.. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7889999999999999999988753 333345678888888888887542 33333333 355678888888
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 036198 419 IDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~ 439 (499)
+.+-...-.-.-..-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 877555333333333444433
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.02 E-value=28 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=18.4
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
.|.-.+|..+|+.|.+.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3455566777777777776666 35555543
No 391
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.82 E-value=1.1e+02 Score=24.65 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=38.7
Q ss_pred HHHHCCCCcChhhHHHHHHHHHhc-CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 367 RMIEVGCWPSVQTYNMLISMYFEL-GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 367 ~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
.+.+.|.+++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44556666554432 334444443 456678888888887776667777666677777777543
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.57 E-value=2.6e+02 Score=26.10 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
+.+|+++|++..+.+ ..+|+ ++.+...--...+.+.+++...-...-.-+.-+..+.|+..+|.+.
T Consensus 232 i~~AE~l~k~ALka~-------e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG-------ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHHH-------HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHH-HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH--HHHHHHHHhcCCc
Q 036198 330 LEE-MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY--NMLISMYFELGEP 393 (499)
Q Consensus 330 ~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~ 393 (499)
+++ |++..+..-......+|.++....-+.++..++-+..+...+.+.... .+|+++-+-..++
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kF 364 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKF 364 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhc
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.56 E-value=1.2e+02 Score=22.18 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=12.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 036198 280 VALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~ 300 (499)
......|++++|.+.+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344556666666666666553
No 394
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.41 E-value=6.5e+02 Score=30.70 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 036198 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443 (499)
Q Consensus 377 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 443 (499)
..+|-...+...+.|.++.|...+-...+.+ .| ..+-.....+-..|+...|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4578888888888999999998887777664 23 3556667777889999999999999887754
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.72 E-value=1.4e+02 Score=30.17 Aligned_cols=89 Identities=9% Similarity=0.005 Sum_probs=46.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 353 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
...|+...|.+.+.........-..+....|.+...+.|....|-.++....... ...+.++-.+-+++.-..+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3455556666555554433221122233344444455555556666665554432 223345555566666666666676
Q ss_pred HHHHHHHHCC
Q 036198 433 FLLEEVVNKG 442 (499)
Q Consensus 433 ~~~~~m~~~~ 442 (499)
+.|++..+..
T Consensus 697 ~~~~~a~~~~ 706 (886)
T KOG4507|consen 697 EAFRQALKLT 706 (886)
T ss_pred HHHHHHHhcC
Confidence 6666666554
No 396
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.57 E-value=94 Score=20.76 Aligned_cols=47 Identities=26% Similarity=0.207 Sum_probs=21.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-----HHcCCHHHHHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL-----CDNKNGDEALRL 364 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~ 364 (499)
...|++-+|-++++.+-.....+....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555666666666655432223344444444432 244555555443
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.46 E-value=2e+02 Score=24.40 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=10.3
Q ss_pred HHHhcCCchHHHHHHHHHhH
Q 036198 386 MYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~ 405 (499)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34555555555555555444
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.84 E-value=5.1e+02 Score=29.00 Aligned_cols=151 Identities=16% Similarity=0.078 Sum_probs=89.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHH-----------------------cCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 036198 242 DTFCKARMVTEAADLFEFMRT-----------------------KGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLG 296 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~-----------------------~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~ 296 (499)
.+|...|+..+|+..|.+... .|....++. .+-|-.+++.+-+.+..+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 346777888888888876643 232222222 3446778888888888888888877
Q ss_pred HHHHcCCCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHH--------
Q 036198 297 HMINSGCLP----DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI----VTYNCFLKVLCDNKNGDE-------- 360 (499)
Q Consensus 297 ~m~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~-------- 360 (499)
...+. +++ -..+++++.+.....|.+-+|.+.+-.- ||. ....-++..++.+|+++.
T Consensus 1008 ~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLRqlvivLfecg~l~~L~~fpfig 1080 (1480)
T KOG4521|consen 1008 KAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLRQLVIVLFECGELEALATFPFIG 1080 (1480)
T ss_pred HHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHhccchHHHhhCCccc
Confidence 76654 122 2356778888888888888777655332 333 345556666677776543
Q ss_pred ----HHH-HHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHH
Q 036198 361 ----ALR-LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 361 ----a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 399 (499)
... +++...+....-....|+.|-.-+...+++.+|-.+
T Consensus 1081 l~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1081 LEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred hHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 333 233222222212233455555556667777765443
No 399
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=43.46 E-value=2e+02 Score=24.25 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC----C-----
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD-NFTYNTAIDTFCKAR----M----- 249 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g----~----- 249 (499)
|...+.-+++.....++.+++++...+ |++.+. +.|+ ..++..+..+|...+ +
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK---------------~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~ 93 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISK---------------FEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAE 93 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHH---------------HHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHH---------------HHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 444444445555556676676665432 444443 3333 345555555544322 1
Q ss_pred --HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 250 --VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 250 --~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+++|.+.|+...+. .|+...|+.-+.... +|-.+..++.+.
T Consensus 94 ~~F~kA~~~FqkAv~~-----~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 94 EYFEKATEYFQKAVDE-----DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHHHH------TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 34444455544443 356666666555542 344444444444
No 400
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.39 E-value=2.6e+02 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 036198 452 SYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 452 ~ll~~~~~~g~~~~a~~~~~~ 472 (499)
-++..+.+.|.+.+|..+...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 345566667777766655443
No 401
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.30 E-value=2.2e+02 Score=24.55 Aligned_cols=72 Identities=15% Similarity=0.013 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---GCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
+.|.+.|-++...+ .--++.....+. .|-...+.+++.+++....+. +-.+|+..+..|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~---~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTP---ELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCC---CCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45666666665554 222333333333 333355566666666665542 2245666666666666666666655
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.56 E-value=52 Score=30.09 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=21.9
Q ss_pred cCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 036198 305 PDVST-YKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339 (499)
Q Consensus 305 ~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 339 (499)
|+..+ |+..|+...+.||+++|+.++++.++.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34333 456666666777777777777776666654
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.89 E-value=94 Score=19.99 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=10.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhc
Q 036198 455 MQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
-++.+.|++++|.++.+.+.+..
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHhhC
Confidence 34445555555555555554443
No 404
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.68 E-value=2.1e+02 Score=24.16 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHcCCCCCCCC--HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 250 VTEAADLFEFMRTKGSTISSPT--AKTY-----AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~--~~~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
.+.|+.+|+.+.+.- ..|. .... -..+..|.+.|.+++|.+++++.... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~---~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEF---SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 456666776666654 1221 1111 22344677777777777777777653 444444433333333
No 405
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.62 E-value=5.5e+02 Score=28.76 Aligned_cols=176 Identities=11% Similarity=0.054 Sum_probs=100.4
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHH-HHHHHcCCCCCH-----HHHHHHHHHHHhcCCHhHHHHH
Q 036198 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTL-EEMIQMGHAPDN-----FTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~-~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~ 256 (499)
+..+|...|...+|...|.+...++.-+......+-.... .--...|-.|+. .=|-.+++.+-+.+..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3445788899999999999987753322211110000000 000123443332 2367888999999999999998
Q ss_pred HHHHHHcCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH----hHHHHHHHHHhcCCHH-------
Q 036198 257 FEFMRTKGSTISSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS----TYKEVLEGMCLAGKVE------- 324 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~------- 324 (499)
-....+.-.. --|+ ..+++.+.+.....|.+.+|...+-.- ||.. ....++-.++.+|.++
T Consensus 1006 A~~AIe~l~d-d~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLRqlvivLfecg~l~~L~~fpf 1078 (1480)
T KOG4521|consen 1006 AVKAIENLPD-DNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLRQLVIVLFECGELEALATFPF 1078 (1480)
T ss_pred HHHHHHhCCC-cchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHhccchHHHhhCCc
Confidence 8777665311 1122 456778888888888888887665432 4443 3445556666776654
Q ss_pred -----HHHH-HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 036198 325 -----EAYK-FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 325 -----~a~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 365 (499)
+... +++..-+....-....|+.|-..+...+++.+|-.+.
T Consensus 1079 igl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1079 IGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred cchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3333 3333333322223345666656666777777665443
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.45 E-value=3.5e+02 Score=26.17 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCc
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---------GCLP 305 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------~~~~ 305 (499)
..+.-+..-|..+|+++.|++.|.+..+-... .+-.+..|-.+|..-.-.|+|.....+..+..+. .+++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 45677888899999999999999996654311 2223445556666667778887777776666543 1223
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----CCCCHhhHHHHHHHHHHcCCHHHHHHH-----HHHHHHCCCC
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-G-----YPPDIVTYNCFLKVLCDNKNGDEALRL-----YGRMIEVGCW 374 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-----~~p~~~~~~~li~~~~~~g~~~~a~~~-----~~~m~~~~~~ 374 (499)
-...+..+...+.+ ++..|.+.|-..... . +.|...+.-..+.+++--++-+--..+ |+...+
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 33334444433333 555555554332211 1 223333333334444333332222222 222222
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-----CCCCCHHHHHHHHH
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKR-----GCAQDVDTYCVMID 420 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~ 420 (499)
.......++..-|. +++..+++++++++.. =+.|.+.+.-.+|+
T Consensus 304 l~Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 LEPQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred cChHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 33445555555443 6788888888887654 23455555444443
No 407
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.36 E-value=1.2e+02 Score=20.60 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 036198 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ 164 (499)
Q Consensus 112 ~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 164 (499)
.|+...++.++...+ +....+.+...+.+....|. .+.+++..-+|.
T Consensus 5 ~~~~~l~~Ql~el~A----ed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~ 51 (65)
T PF09454_consen 5 VAEDPLSNQLYELVA----EDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRS 51 (65)
T ss_dssp E-SSHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 466778999999999 88999999999999999983 344444444433
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.22 E-value=1.4e+02 Score=24.09 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.0
Q ss_pred HHHHHHHHHHh
Q 036198 325 EAYKFLEEMGN 335 (499)
Q Consensus 325 ~a~~~~~~m~~ 335 (499)
.|.++++.+.+
T Consensus 38 sAeei~~~l~~ 48 (145)
T COG0735 38 SAEELYEELRE 48 (145)
T ss_pred CHHHHHHHHHH
Confidence 33333333333
No 409
>PHA02798 ankyrin-like protein; Provisional
Probab=39.75 E-value=3.8e+02 Score=26.86 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCcCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHHcCCHHHHHH
Q 036198 290 ECFSLLGHMINSGCLPDVS---TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV---TYNCFLKVLCDNKNGDEALR 363 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~ 363 (499)
...++.+-+.+.|..++.. ..+.+. ..+..+.. .-.++++.+.+.|..++.. -++ .+..+++.|.. .-.+
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh-~a~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~t-pL~~a~~~~~~-~~~~ 162 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLY-CLLSNGYI-NNLEILLFMIENGADTTLLDKDGFT-MLQVYLQSNHH-IDIE 162 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHH-HHHHcCCc-ChHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCc-chHH
Confidence 3466777777777665532 223333 33333321 2234555555666555432 223 33444444441 1123
Q ss_pred HHHHHHHCCCCcC
Q 036198 364 LYGRMIEVGCWPS 376 (499)
Q Consensus 364 ~~~~m~~~~~~~~ 376 (499)
+.+.+.+.|..++
T Consensus 163 vv~~Ll~~gadin 175 (489)
T PHA02798 163 IIKLLLEKGVDIN 175 (489)
T ss_pred HHHHHHHhCCCcc
Confidence 3344445555443
No 410
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.59 E-value=65 Score=24.59 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
.++......+..-.|.++++.+.+.+..++..|.-..++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555555666678888888877776667777777777777777554
No 411
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.50 E-value=1.6e+02 Score=21.94 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 431 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
..+.+++...++....+-....|.-.|.+.|+.+.|.+-|+.=+..||.+
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 34455555555544444445555566777777777777777777776654
No 412
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.19 E-value=2.5e+02 Score=24.09 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH--HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH----
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC--FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY---- 380 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---- 380 (499)
...|..++.... .+.+ +.....+.+...+....-.++.+ +...+...+++++|...++..... |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555555443 2333 44444555555422212222222 235567788888888888876643 222222
Q ss_pred -HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 381 -NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 381 -~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
-.|.+.....|.+|+|...++...+.+.. ......--+.+...|+-++|..-|+..+..+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455667788888898888887665322 1223334467788888899998888888775
No 413
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=38.79 E-value=2.2e+02 Score=24.82 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCC
Q 036198 96 KIAFRFFMWAGHQDNY---AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNK 150 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 150 (499)
+.|++.|......... .-+..+...||..+.+ +.|++++|...|.++...+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r---rlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR---RLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHcCCC
Confidence 3688888876554433 3355666667777765 99999999999999988774
No 414
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.69 E-value=2e+02 Score=26.58 Aligned_cols=42 Identities=12% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
++++.+.+.++.|.-.++.-+.-.+.+.=.+.++..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444444444444444444444444444
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.54 E-value=1.9e+02 Score=26.63 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----------CCCHHHH
Q 036198 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----------CSKVEEA 431 (499)
Q Consensus 362 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 431 (499)
.++++.|.+.++.|.-..|..+.-.+.+.=.+.+...+|+.+... ..-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567777777788888777777666666666777888888887653 2225555555542 5777777
Q ss_pred HHHHHH
Q 036198 432 CFLLEE 437 (499)
Q Consensus 432 ~~~~~~ 437 (499)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 776654
No 416
>PRK09857 putative transposase; Provisional
Probab=37.13 E-value=2.5e+02 Score=25.92 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=28.1
Q ss_pred HhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 036198 388 FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 388 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 446 (499)
...++.++..++++.+.+. ..........+..-+.+.|..+++.++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444445555444433 111222223344444444555566677777777776543
No 417
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.99 E-value=1.9e+02 Score=22.01 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhC
Q 036198 323 VEEAYKFLEEMGNK 336 (499)
Q Consensus 323 ~~~a~~~~~~m~~~ 336 (499)
.++|..+.+.+...
T Consensus 22 H~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 22 HQEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444444
No 418
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=36.96 E-value=1.9e+02 Score=24.43 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQND----R-------MEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~----~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
+++|+.-|++..... |+ ..++..+..+|...+ + +++|...|+...+. .|+..+|+.-+...
T Consensus 51 iedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 566666677776654 44 466666666665533 2 45566666666655 69999999888876
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 036198 318 CLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~ 338 (499)
. +|-++..++.+.+.
T Consensus 124 ~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 A------KAPELHMEIHKQGL 138 (186)
T ss_dssp H------THHHHHHHHHHSSS
T ss_pred H------hhHHHHHHHHHHHh
Confidence 4 35666666666543
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.81 E-value=4.1e+02 Score=25.88 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--C-----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNK--G-----YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~--~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
..|++.++-.||+..|+++++.+.-. + ..-.+.+|-.+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777654321 1 11123345556666667777777777776653
No 420
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.76 E-value=92 Score=21.09 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~ 284 (499)
|+...++.++..+++-.-+++++..+.+..+.| ..+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g----~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG----SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 445556666666666666666666666666665 2345555555544443
No 421
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.40 E-value=4.1e+02 Score=25.75 Aligned_cols=174 Identities=9% Similarity=0.030 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCC
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---------GYPPD 341 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------~~~p~ 341 (499)
..+.-+...|...|+++.|++.|.+..+-- ..-....|-.+|..-.-.|+|........+.... .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 466778889999999999999999865431 1223445666777777788888877777666554 12333
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCcChhhHHHHHHHHHhcCCchHHHH-----HHHHHhHCCCCC
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG------CWPSVQTYNMLISMYFELGEPDGAFE-----TWHEMDKRGCAQ 410 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~-----~~~~m~~~~~~p 410 (499)
...+..+...+. ++++.|.+.|-.....- +.|...+....+.+.+.-++-+--.. .|+...+.
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 344444444333 36666666554433211 23433333334444443332222112 22222221
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHH
Q 036198 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK-----GLKLPYRKFDSYL 454 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll 454 (499)
.+..+..+..-| .+++...+++++++... -+.|...++-.+|
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 223333333332 36677788888877543 2345555555555
No 422
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.96 E-value=2.6e+02 Score=23.30 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=47.9
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
+.+...|++++..- ..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+.+.
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34556677765543 356666666677778999999999988777888777788888888876543
No 423
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.70 E-value=4.4e+02 Score=25.93 Aligned_cols=107 Identities=18% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH----HHHHHHH------
Q 036198 156 DVLLMILKQYTEK-IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----GMQTLEE------ 224 (499)
Q Consensus 156 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l----a~~~~~~------ 224 (499)
.++..++-+|+.. ...|.--......+++-.++ ..-++|.-++..+.+.+-|..++-|.. -..+|+.
T Consensus 224 ~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~--~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~l 301 (436)
T KOG2058|consen 224 QTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLM--PSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKL 301 (436)
T ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhc--CChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHC
Confidence 5777788887765 33333333333333333333 337789888888888766665555544 1222222
Q ss_pred ------HHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 036198 225 ------MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 225 ------m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 264 (499)
+...|+..+..+++-.|.++...+-.+.++++|+-+.-.|
T Consensus 302 Pkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eG 347 (436)
T KOG2058|consen 302 PKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEG 347 (436)
T ss_pred HHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcc
Confidence 2234455556666777777777777777777777776665
No 424
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=35.45 E-value=52 Score=20.38 Aligned_cols=41 Identities=5% Similarity=0.024 Sum_probs=28.7
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHH
Q 036198 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMK 146 (499)
Q Consensus 102 f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~ 146 (499)
.+++.++..++-+...+..+.+.+- ..+....+.++|++..
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle----~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLE----SNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHH----CHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHH----HhcCchhHHHHHHHHH
Confidence 4566677888888888888888887 6667667777776654
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.36 E-value=4.2e+02 Score=25.59 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIV--TYNCFLKVLC--DNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 371 (499)
..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888776 444444 3444555554 355677788777776653
No 426
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.12 E-value=2e+02 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 036198 278 MIVALVQNDRMEECFSLLGHM 298 (499)
Q Consensus 278 ll~~~~~~~~~~~a~~~~~~m 298 (499)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444455555555555555554
No 427
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.98 E-value=3.3e+02 Score=24.23 Aligned_cols=215 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-----GCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
++.++..+..++. .++..-. .+.-.+.+++|-++|.+.... +...-...|.-....+.+.|.-++|
T Consensus 3 ~a~~l~k~AEkK~----~~s~gF~-----lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDa 73 (288)
T KOG1586|consen 3 DAVQLMKKAEKKL----NGSGGFL-----LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA 73 (288)
T ss_pred cHHHHHHHHHHhc----ccCCccc-----ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH
Q ss_pred HHHHHHHHhC----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 327 YKFLEEMGNK----GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 327 ~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
-..|-++-+. +..--+.....-|..|+..|++..|-+...++-+. ...+..-+..-|..|-..+++-...+.-..
T Consensus 74 at~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH------HHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD------SYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 403 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.-+ ++--+...-+..+++.+|..+|++.-...+.-+..-|. .-.-+..-.+|.-.+...+++-.+.
T Consensus 153 ANK--------C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 153 ANK--------CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Q ss_pred cChhHHHH
Q 036198 477 YNPVIARR 484 (499)
Q Consensus 477 ~~~~~~~~ 484 (499)
+|....++
T Consensus 225 dP~F~dsR 232 (288)
T KOG1586|consen 225 DPAFTDSR 232 (288)
T ss_pred CCcccccH
No 428
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.25 E-value=2.4e+02 Score=24.24 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
..+.++..|...|+++.|.+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3466666666677777777777666544
No 429
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.05 E-value=1.8e+02 Score=22.22 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036198 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456 (499)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 456 (499)
+|+-+.++...++|+++++-|.+.| ..+...-+.|-..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4555666777788888888888877 3455544444333
No 430
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.81 E-value=2.4e+02 Score=25.26 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHH----hHCC-CCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM----DKRG-CAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~-~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
++.|...|..... ...-....-.+..-|.+.|++++|.++|+.+ .+.| ..+...+...+..++...|+.+...
T Consensus 161 L~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHHHHC
Q 036198 433 FLLEEVVNK 441 (499)
Q Consensus 433 ~~~~~m~~~ 441 (499)
.+.-++...
T Consensus 239 ~~~leLls~ 247 (247)
T PF11817_consen 239 TTSLELLSR 247 (247)
T ss_pred HHHHHHhcC
No 431
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.74 E-value=1.8e+02 Score=20.97 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 368 (499)
++|+-....|+..|...|.+++....-.=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444433333334444444443
No 432
>PHA03100 ankyrin repeat protein; Provisional
Probab=33.61 E-value=4.9e+02 Score=25.84 Aligned_cols=13 Identities=0% Similarity=0.018 Sum_probs=6.0
Q ss_pred HHhCCChHHHHHH
Q 036198 187 LCKCGLVDYAETI 199 (499)
Q Consensus 187 ~~~~g~~~~A~~~ 199 (499)
.+..|..+-+.-+
T Consensus 80 a~~~~~~~iv~~L 92 (480)
T PHA03100 80 YNLTDVKEIVKLL 92 (480)
T ss_pred HHhhchHHHHHHH
Confidence 4445554444333
No 433
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.49 E-value=1.3e+02 Score=30.92 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHH
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDY 144 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~ 144 (499)
+.-|+ .+..+. -.|.++.|.++++.
T Consensus 149 p~FW~-~v~~lv----lrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLV----LRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHH----HTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHH----HcCCHHHHHHHHHh
Confidence 55565 555555 57888888888843
No 434
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.32 E-value=2.2e+02 Score=21.47 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~ 332 (499)
++..|...|+.++|...+.+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 33344444555555444444
No 435
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.24 E-value=2.8e+02 Score=22.24 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 411 DVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKGL-KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
+..+--.+..++.++. ++.+...++++..+..- .-...-..-|.-++.+.++++++.++++.+.+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3333344444444433 34445555655554211 1112222333445566666666666666665543
No 436
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.21 E-value=62 Score=24.96 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036198 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 428 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 461 (499)
.-.|.++++.+.+.+..++..|...-++.+.+.|
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3344444444444444444444444444444433
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.72 E-value=2.6e+02 Score=21.84 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 430 EACFLLEEVVNKGLKL-PYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.+.++|+.|..+|+-- ....|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5566666666554332 244455555555666666666666543
No 438
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.60 E-value=1.2e+02 Score=31.10 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=30.4
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
.+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+.++|+...+..+.+.+.
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555667778888888888888888877654311 23356666777778888777666655554
No 439
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.22 E-value=4.2e+02 Score=27.10 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 231 APDNFTYNTAIDTFCKA--RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
-|+..+.-+++.-.... ...+-+-.+|..|..- ..|--.+.|...-.+.-.|+...|.+.+.......-.-..+
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~----~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP----NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC----CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 34555555554443322 2234455666666433 23332233333333344666666766665554332111223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
....|...+.+.|-.-.|..++.+..... ...+-++-.+..++....+.+.|++.|++..+.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 33445555666666667777776665554 234556666677777777777777777776654
No 440
>PRK09857 putative transposase; Provisional
Probab=29.67 E-value=3.9e+02 Score=24.70 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 411 (499)
.++....+.++.++..++++.+.+. ..........+..-+.+.|.-+++.++...|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334444444444444444433 111222222333444444444556666777776666544
No 441
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.44 E-value=1.7e+02 Score=22.16 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3556666666667788888888887766677777777777777776554
No 442
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.37 E-value=3.6e+02 Score=23.05 Aligned_cols=63 Identities=8% Similarity=-0.029 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH-HHHHcCC--HHHHHHHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV-ALVQNDR--MEECFSLLGHMIN 300 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~-~~~~~~~--~~~a~~~~~~m~~ 300 (499)
+...+-.....|++++|.+-++.+.+.-.. .+.-...|..+.. +++..+. +-+|..++.-+..
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~-Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEK-LKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 344445555667777777666665432100 1111233444443 4444433 4455555554443
No 443
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=29.01 E-value=4e+02 Score=23.41 Aligned_cols=181 Identities=10% Similarity=0.124 Sum_probs=86.3
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
|-+.-|.-=|.+..... +.-..+||-+.--+...|+++.|.+.|+...+..-.-+-...|--| ++.-.|++.-|.
T Consensus 79 GL~~LAR~DftQaLai~----P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhhcC----CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhH
Confidence 34444444454444432 2235667777777777888888888888777653211111112111 233456777776
Q ss_pred HHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 328 KFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYGR-MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 328 ~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
+=+...-+.+. .|-...|--++. ..-++.+|..-+.+ ... .|..-|...|-.|. .|++. .+.+++.+..
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a 224 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMERLKA 224 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHh
Confidence 65555544322 122222222221 23355555443332 222 23333433332222 12221 1222233222
Q ss_pred CCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 036198 406 RGCAQD-------VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443 (499)
Q Consensus 406 ~~~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 443 (499)
. ..-+ ..||--+..-+...|+.++|..+|+-....++
T Consensus 225 ~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 225 D-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred h-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1 1111 23555666667778888888888887766553
No 444
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.98 E-value=5e+02 Score=24.49 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCcChhhH--HHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEV---GCWPSVQTY--NMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
.++...-+.++.++|.+.++++.+. --.|+.+.| +.+..++...|+..++.+.+.+..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444444555666777666666542 123454444 3344445556666666666666554
No 445
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=28.93 E-value=6.4e+02 Score=25.75 Aligned_cols=184 Identities=13% Similarity=0.002 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cCHHh
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL--PDVST 309 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~ 309 (499)
++..+|...+..-.+.|+.+.+.-+|++..--. ..=...|--.++.....|+.+-|..++....+--++ |....
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c----A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPC----ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH----hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 355688888899999999999999999886432 223456666777777778888888887766654332 22222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHHcCCHHHHHH---HHHHHHHCCCCcChhhHHHHHH
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV-TYNCFLKVLCDNKNGDEALR---LYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~---~~~~m~~~~~~~~~~~~~~li~ 385 (499)
+.+.+ .-..|+++.|..+++.+...- |+.. .-..-+....+.|..+.+.. ++....... -+..+...+.-
T Consensus 371 ~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~ 444 (577)
T KOG1258|consen 371 LEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYV 444 (577)
T ss_pred HHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHH
Confidence 22222 234579999999999988763 4432 22223445567788888773 333333221 22222222222
Q ss_pred H-----HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 386 M-----YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 386 ~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
- +.-.++.+.|..++..+.+. .+++...|..+++.....+
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2 23357889999999999876 5667778888888766554
No 446
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.70 E-value=2.3e+02 Score=20.50 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 293 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
++|+-....|+..|...|..+++.+.-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666777777777777777777666667777777777654
No 447
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.66 E-value=7.3e+02 Score=26.34 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----------HhHHHHHHHHHhc
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV----------STYKEVLEGMCLA 320 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------~~~~~ll~~~~~~ 320 (499)
++--..+.+|..+-.++......+...++-.|....+++...++.+.+.+. ||. ..|...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 344556777777653222334456666677777788888888888888764 322 1233344444456
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCHhh-----HHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCcCh
Q 036198 321 GKVEEAYKFLEEMGNK--GYPPDIVT-----YNCFL--KVLCDNKNGDEALRLYGRMIEVGCWPSV 377 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~--~~~p~~~~-----~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 377 (499)
|+-++|+...-.+.+. .+.||... |.-+. ..|...+..+.|.+.|++.-+ +.|+.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~ 320 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLE 320 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchh
Confidence 7888888877666554 34455432 21111 234445556777777777655 33543
No 448
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.36 E-value=1.5e+02 Score=22.75 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=20.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
++......+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555555555555554444444444444444443
No 449
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.34 E-value=1e+02 Score=16.31 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=14.9
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll 279 (499)
|+.+.|..+|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~----~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF----PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC----CCChHHHHHHH
Confidence 34566666666666553 23444444443
No 450
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.75 E-value=3.9e+02 Score=22.89 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 277 IMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 277 ~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+++-.|-+.-+|.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777664
No 451
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.61 E-value=2.4e+02 Score=20.48 Aligned_cols=20 Identities=40% Similarity=0.203 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 036198 315 EGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~ 334 (499)
......|++++|.+.+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34455566666666665543
No 452
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.60 E-value=3.3e+02 Score=21.94 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=43.3
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDN-KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-+.+
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3455667775543 34455555554 4677889999999888766677777777777787776543
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.07 E-value=5.3e+02 Score=24.20 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHhHHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT-FCKARMVTEAADL 256 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~ 256 (499)
.++-.....||+-|+-+.|.+.+++-. +.-...|.+.|+..+.+-+.. |....-+.+-++.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~------------------~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iek 166 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTY------------------EKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEK 166 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH------------------HHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 356677788999999999999988753 333456777777666544433 3333335555555
Q ss_pred HHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 257 FEFMRTKGSTISSP-TAKTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 257 ~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
.+.+.++|..=-.. -..+|..+- |....++.+|-.+|-+...
T Consensus 167 ak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 167 AKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 56666666310000 122343332 3345678888888877654
No 454
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.89 E-value=7.1e+02 Score=25.60 Aligned_cols=234 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
...++..+.+.++.+........+....-..+--..+.=+.+.-.+++.++.. .. ...+..++++....|-.....
T Consensus 285 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~ 360 (574)
T smart00638 285 SNEVQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALK 360 (574)
T ss_pred CchhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHH
Q ss_pred HHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh-------hhHHHHHHHHHhcCC-------
Q 036198 328 KFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV-------QTYNMLISMYFELGE------- 392 (499)
Q Consensus 328 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~------- 392 (499)
-+.+.+....+.+ .....-..+-.....-..+-...+++-+......+.. .+|..++.-+|....
T Consensus 361 ~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~ 440 (574)
T smart00638 361 FIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL 440 (574)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI--GDLGAIHKLS 470 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~ 470 (499)
-+-...+.+.+.+.--.-|..--...|.++...|.......+..-+. .....+...-...+.++.+. ...+.+..++
T Consensus 441 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 441 EELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Q ss_pred HHHHhhcChhHHHHHH
Q 036198 471 DHMRKFYNPVIARRLA 486 (499)
Q Consensus 471 ~~m~~~~~~~~~~~~~ 486 (499)
-.+-.......-=|..
T Consensus 520 ~~i~~n~~e~~EvRia 535 (574)
T smart00638 520 LPIYLNRAEPPEVRMA 535 (574)
T ss_pred HHHHcCCCCChHHHHH
No 455
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.40 E-value=2.9e+02 Score=21.14 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~ 264 (499)
+++.+.++...++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4566777888999999999999988
No 456
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.37 E-value=7e+02 Score=25.33 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
..++.-|.+.+++++|..++..|.=.... -.-.+.+.+.+.+.+..--++.+..++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 34666788888888888888777422110 0112334444555555444455555555543
No 457
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.36 E-value=5.2e+02 Score=23.88 Aligned_cols=116 Identities=11% Similarity=0.046 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHCCC----CcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 036198 358 GDEALRLYGRMIEVGC----WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 433 (499)
.+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++..... ++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4667888888777422 345556666777777888866666666665543 467778899999999999999899
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHH----HHHHHhhcC
Q 036198 434 LLEEVVNKG-LKLPYRKFDSYLMQLSVIGDL--GAIHKL----SDHMRKFYN 478 (499)
Q Consensus 434 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~--~~a~~~----~~~m~~~~~ 478 (499)
+++.....+ +++. . ...++.++...+.. +.+.++ |+.+.+.++
T Consensus 223 ~l~~~l~~~~v~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~ 272 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-D-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFG 272 (324)
T ss_dssp HHHHHHCTSTS-TT-T-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-
T ss_pred HHHHHcCCcccccH-H-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Confidence 999988865 4433 3 34455555533332 445444 344544443
No 458
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=25.43 E-value=2.9e+02 Score=22.90 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=13.3
Q ss_pred HHHHhCCChHHHHHHHHHhh
Q 036198 185 DALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~ 204 (499)
...|..|+.++|..+.++.-
T Consensus 126 ~~~~~~~~~~~v~~~vr~yg 145 (164)
T PF07840_consen 126 LEACEKGDYDQVPDVVRQYG 145 (164)
T ss_dssp HHHHHCT-CCGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34566778888888877754
No 459
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.12 E-value=6.3e+02 Score=24.39 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHH--hHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 036198 280 VALVQNDRMEECFSLLGHMINSGCLPDVS--TYKEVLEGMC--LAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 336 (499)
..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 556555 4455555554 456788999999987765
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=24.46 E-value=4.9e+02 Score=22.91 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA--IMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
.++..-+|.|+--|.-...+.+|-+.|..- .|......+..+++ .-|......|+++.|.+..+++...
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE 93 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH
Confidence 344444555554444444444455555322 22110012333332 3445556677777777776666543
No 461
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=24.38 E-value=3.6e+02 Score=26.39 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----hhhHHHHHHHHHhcC-Cc
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS----VQTYNMLISMYFELG-EP 393 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~-~~ 393 (499)
....+++|+++-++-...|.+ ..-|-...|.+++.++.+.|+.|| ..+..-.+.+|+-.| .+
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p-------------~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ 281 (561)
T COG2987 215 IAETLDEALALAEEATAAGEP-------------ISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTV 281 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCc-------------eEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCH
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS-------------KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV- 459 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 459 (499)
+++.++..+ |...|..+...-.... -++-.-.+-+...+.|.+ +...|-.++-+|.+
T Consensus 282 ee~~~lr~~--------d~~~~~~~a~~sm~~hv~Aml~~q~~G~~~fDYGNnirq~a~d~G~~-~aF~fPgfVpayIrP 352 (561)
T COG2987 282 EEADELREE--------DPDKYRKLARASMARHVEAMLAFQDRGVPTFDYGNNIRQVAKDEGVE-NAFDFPGFVPAYIRP 352 (561)
T ss_pred HHHHHHHhh--------CHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecchHHHHHHHhcccc-ccccCCcchHHhhhh
Q ss_pred --------------cCCHHHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcc
Q 036198 460 --------------IGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLRE 498 (499)
Q Consensus 460 --------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~l~~ 498 (499)
+|+.+...+.=+.+++.+++..-=..+|.....++...+
T Consensus 353 LFc~G~GPFRW~aLSgdpeDi~~tD~~~~el~p~n~~l~~Wid~A~e~i~fqG 405 (561)
T COG2987 353 LFCEGIGPFRWVALSGDPEDIYKTDAAVKELFPDNKHLHRWIDMARERIAFQG 405 (561)
T ss_pred hhhcCcCCeeEEEecCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHhcCcccc
No 462
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=24.27 E-value=2e+02 Score=28.41 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----hhhHHHHHHHHHhcC-Cch
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS----VQTYNMLISMYFELG-EPD 394 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~-~~~ 394 (499)
..++++|++..++..+.+-+ ..-|-...|..+|.++.+.|+.|| ..+....+.+|+=.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKP-------------ISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------eEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Q ss_pred HHHHHHHHHhHC---CCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 036198 395 GAFETWHEMDKR---GCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI--------- 460 (499)
Q Consensus 395 ~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------- 460 (499)
++.++..+=.+. -..-+..-.-..|..+.+.|- +|-.-.+..+..+.|++ +...|-.++.+|.+-
T Consensus 274 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPF 352 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPF 352 (545)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCc
Q ss_pred ------CCHHHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcc
Q 036198 461 ------GDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLRE 498 (499)
Q Consensus 461 ------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~l~~ 498 (499)
|+.+...+.=+.+.+.+++......+|......+...+
T Consensus 353 RWvaLSGdpeDi~~TD~~~~e~~~~~~~~~~WI~~A~e~~~fqG 396 (545)
T TIGR01228 353 RWVALSGDPADIYRTDAAVKELFPEDAHLHRWIDMAQERVSFQG 396 (545)
T ss_pred eeEecCCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhcCcccC
No 463
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=24.17 E-value=1.6e+02 Score=23.49 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036198 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455 (499)
Q Consensus 425 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 455 (499)
.|-..+...++++|.++|+..+...|+.+++
T Consensus 122 kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 122 KGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred cCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3556666666666666666666666665554
No 464
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.09 E-value=7.7e+02 Score=25.02 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=49.1
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036198 226 IQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS----------SPTAKTYAIMIVALVQNDRMEECFSLL 295 (499)
Q Consensus 226 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----------~p~~~~~~~ll~~~~~~~~~~~a~~~~ 295 (499)
.+.|+..+......++... .|+...|..++++....|...+ .++......++.++. .++.+.+..++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3456766766666555543 5888888888877665442111 122333344444433 47788888888
Q ss_pred HHHHHcCCCcCH
Q 036198 296 GHMINSGCLPDV 307 (499)
Q Consensus 296 ~~m~~~~~~~~~ 307 (499)
++|.+.|..|..
T Consensus 269 ~~l~~~g~~~~~ 280 (509)
T PRK14958 269 TRLVEQGVDFSN 280 (509)
T ss_pred HHHHHcCCCHHH
Confidence 888888876643
No 465
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=23.95 E-value=3.3e+02 Score=20.67 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555554444
No 466
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.80 E-value=1.1e+03 Score=26.81 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=95.0
Q ss_pred HHHHcCCHHHHHH------HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH-------HHhCCCCCCHhhHHH
Q 036198 281 ALVQNDRMEECFS------LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE-------MGNKGYPPDIVTYNC 347 (499)
Q Consensus 281 ~~~~~~~~~~a~~------~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-------m~~~~~~p~~~~~~~ 347 (499)
.....|.+.++.+ ++......-.++....|..+-..+-+.|+.++|...-.. +......-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444566666655 554322222245566788888889999999998876543 222222234455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----C--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-----C--CCCCHH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEV-----G--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-----G--CAQDVD 413 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p~~~ 413 (499)
+-..+...+....|...+.+.... | -+|...+++.+-..+...++++.|.++.+...+. | --++..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666677888888887776542 2 1233444454444455567888888888877553 2 124556
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLE 436 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~ 436 (499)
+|..+.+.+...+++..|....+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 77777777777777766554433
No 467
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.27 E-value=6.2e+02 Score=23.68 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH---cCCHHHHHHH
Q 036198 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD---NKNGDEALRL 364 (499)
Q Consensus 288 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~ 364 (499)
.+.-+.++++..+.+ +.+......+|+.+.+..+.++..+.++++...... +...|...|..... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 355667777777663 456667777888888888888888888888776432 56677777765543 2245566666
Q ss_pred HHHHHHC------CC----CcChh-------hHHHHHHHHHhcCCchHHHHHHHHHhHCCC
Q 036198 365 YGRMIEV------GC----WPSVQ-------TYNMLISMYFELGEPDGAFETWHEMDKRGC 408 (499)
Q Consensus 365 ~~~m~~~------~~----~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 408 (499)
|.+.... +. .+-.. .+..+.......|..+.|..+|+.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6554321 11 01111 223333334567888889998888887653
No 468
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=23.26 E-value=3.8e+02 Score=21.25 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
.++..+|--+...|+++.|+++.+...++|.
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3555677778888899999999888888885
No 469
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.02 E-value=5.8e+02 Score=23.20 Aligned_cols=198 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHH
Q 036198 286 DRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDE 360 (499)
Q Consensus 286 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 360 (499)
+++..+...+......+.. -....-...........+..+|.+.+...-+.| .......|...|.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHHHHCCCCcChhhHHHHHHHHHhc-----CCch--HHHHHHHHHhHCCCCCCHHHHHHHHHHH----HhCCCHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFEL-----GEPD--GAFETWHEMDKRGCAQDVDTYCVMIDGL----FDCSKVE 429 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~ 429 (499)
|...|+...+.|..+...+...+-..|..- -..+ .|...+.+....+ +......+-..| .-..+..
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHH
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhhcChhHHHHHHHHHhhhh
Q 036198 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG---------------DLGAIHKLSDHMRKFYNPVIARRLALNQKRVR 493 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 493 (499)
+|...|...-+.|. ......+- .+...| +...|...+........+..............
T Consensus 209 ~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (292)
T COG0790 209 KAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGLS 283 (292)
T ss_pred HHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhh
No 470
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=22.53 E-value=7.3e+02 Score=24.19 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 036198 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 356 (499)
.+++.|+-.+-.|.+.|-.|-...-..++-++-.-|
T Consensus 263 SD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 263 SDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 445555555555555554444444444444444433
No 471
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=21.66 E-value=5.7e+02 Score=22.63 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
.++..+|--+...|+++.|+++.+...++|.
T Consensus 84 ~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 84 DVLMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred CeeeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 3456677788899999999999999999986
No 472
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.57 E-value=6.4e+02 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKN 205 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (499)
.-...+..+...|++..|+++..+..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455677788889999999999888765
No 473
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=21.54 E-value=6.7e+02 Score=23.44 Aligned_cols=119 Identities=10% Similarity=0.042 Sum_probs=80.0
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh---cCCHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL---AGKVEEA 326 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~g~~~~a 326 (499)
.+.-+.++++..+.. +.+...+..+|..+.+..+.++..+.|+++.... +-+...|...|+.... .-.++..
T Consensus 47 ~E~klsilerAL~~n----p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKHN----PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHH
Confidence 456677888888775 4577888889999999999999999999998763 2356677776665544 2345566
Q ss_pred HHHHHHHHhC------CC----CCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036198 327 YKFLEEMGNK------GY----PPDI-------VTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373 (499)
Q Consensus 327 ~~~~~~m~~~------~~----~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 373 (499)
..+|.+..+. +. .+-. ..+.-+...+.+.|..+.|..+++.+.+.++
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6655543221 11 0111 1233333445678999999999999998764
No 474
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.47 E-value=8.7e+02 Score=24.69 Aligned_cols=61 Identities=7% Similarity=-0.095 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGC-WPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
...++.-|.+.+++++|..++..|.=.-. .---.+.+.+++...+..--++.+..++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 44677889999999999999988852110 00122345556666666555556666665554
No 475
>COG0819 TenA Putative transcription activator [Transcription]
Probab=21.31 E-value=5.6e+02 Score=22.44 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 036198 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254 (499)
Q Consensus 223 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 254 (499)
+.+.+....|....|+..|...+..|++.+..
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~ 129 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELL 129 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHH
Confidence 44555566777788888888888888866544
No 476
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.11 E-value=7.3e+02 Score=23.71 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHhcchhhhhhHHHHH
Q 036198 112 AHEPLAYNLMIDILSSTKYKAKQFRLVC 139 (499)
Q Consensus 112 ~~~~~~~~~li~~~~~~~~~~~~~~~a~ 139 (499)
.|++.+.-.++.-+..++ ..|+...|-
T Consensus 72 ~~~~~~li~~~~~FV~~~-n~eqlr~as 98 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDEN-NGEQLRLAS 98 (422)
T ss_pred CCCHHHHHHHHHHHHHhc-ChHHHhhHH
Confidence 466666666666666332 234444333
No 477
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=21.09 E-value=5.8e+02 Score=22.48 Aligned_cols=158 Identities=13% Similarity=0.033 Sum_probs=92.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcChhhHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLIS 385 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~ 385 (499)
+.+||-+---+...|+++.|.+.|+...+.+..-+-...|.-|..| -.|++.-|.+-+...-+.. -.|-...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5678888888889999999999999998876554444444444443 4688888887776665543 2232333333322
Q ss_pred HHHhcCCchHHHHHH-HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 036198 386 MYFELGEPDGAFETW-HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-------YRKFDSYLMQL 457 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~~~~ll~~~ 457 (499)
..-++.+|..-+ ++... .|..-|...|-.|.- |.+. ...+++++... -.-+ ..||--+..-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 223455555433 33332 354555544444332 2211 12233333221 1111 34666777888
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 036198 458 SVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~ 475 (499)
...|+.++|..+|+-...
T Consensus 248 l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 248 LSLGDLDEATALFKLAVA 265 (297)
T ss_pred hccccHHHHHHHHHHHHH
Confidence 899999999999987664
No 478
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.98 E-value=8.8e+02 Score=24.58 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=49.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 036198 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLL 184 (499)
Q Consensus 105 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li 184 (499)
+..+.|+..+......++... .|+...|..++++....+....+......++. .++....-.++
T Consensus 190 il~~egi~~~~~al~~ia~~s------~GslR~al~lLdq~ia~~~~~It~~~V~~~lg----------~~~~~~i~~ll 253 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA------NGSVRDALSLLDQSIAYGNGKVLIADVKTMLG----------TIEPLLLFDIL 253 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc------CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHC----------CCCHHHHHHHH
Confidence 334456666666655554432 47888888888877655432344444443332 24444555566
Q ss_pred HHHHhCCChHHHHHHHHHhhc
Q 036198 185 DALCKCGLVDYAETICKRVKN 205 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~ 205 (499)
+++.. |+.+.+..+++++..
T Consensus 254 ~al~~-~d~~~~l~~~~~l~~ 273 (509)
T PRK14958 254 EALAA-KAGDRLLGCVTRLVE 273 (509)
T ss_pred HHHHc-CCHHHHHHHHHHHHH
Confidence 65554 788888888888765
No 479
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.90 E-value=2.7e+02 Score=24.18 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHhcC---------CchHHHHHHHHHhHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 377 VQTYNMLISMYFELG---------EPDGAFETWHEMDKRGCA-QDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 377 ~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
..-|..+..+|++.| +.+.-.++++...+.|++ .=+..|+.+|+.-.-.-+.++..+++..+
T Consensus 163 leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 163 LEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 344555666666655 233344445555554433 12234555554433334455555555444
No 480
>PRK05414 urocanate hydratase; Provisional
Probab=20.83 E-value=2.7e+02 Score=27.72 Aligned_cols=165 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----hhhHHHHHHHHHhcC-Cch
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS----VQTYNMLISMYFELG-EPD 394 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~-~~~ 394 (499)
..++++|++..++..+.+-+ ..-|-...|.+++.++.+.|+.|| ..+....+.+|+=.| .++
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~e 282 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEP-------------LSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLE 282 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------eEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHH
Q ss_pred HHHHHHHHHhHC---CCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------
Q 036198 395 GAFETWHEMDKR---GCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV---------- 459 (499)
Q Consensus 395 ~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---------- 459 (499)
++.++..+=.+. ...-+..-.-..|..+.+.|- +|-.-.+..+..+.|++ +...|-.++.+|.+
T Consensus 283 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~-~aF~~P~fV~~~irplF~~G~GPF 361 (556)
T PRK05414 283 EAAELRAEDPEEFVKAAKASMARHVEAMLAFQARGAYVFDYGNNIRQMAFDAGVE-NAFDFPGFVPAYIRPLFCEGKGPF 361 (556)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHCCcc-ccCCCCCchhhhcchhhhcCCCCc
Q ss_pred -----cCCHHHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcc
Q 036198 460 -----IGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLRE 498 (499)
Q Consensus 460 -----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~l~~ 498 (499)
+|+.+...+.=+.+.+.++.......||......+...+
T Consensus 362 RWvalSGdpeDi~~TD~~~~e~~~~~~~~~~WI~~A~e~~~f~G 405 (556)
T PRK05414 362 RWVALSGDPEDIYKTDAAVKELFPDDEHLHRWIDMARERILFQG 405 (556)
T ss_pred eEEEcCCCHHHHHHHHHHHHHhcccchHHHHHHHHHHhcCcccC
No 481
>PHA02798 ankyrin-like protein; Provisional
Probab=20.67 E-value=5.3e+02 Score=25.85 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHHHhcCCHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~ 330 (499)
..++.+.+.+.|...-..|..-.+.+..+ +..+.. .-.++...+.+.|..++... -...+..+++.|.. .-.+++
T Consensus 88 ~~~iv~~Ll~~GadiN~~d~~G~TpLh~a-~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~-~~~~vv 164 (489)
T PHA02798 88 MLDIVKILIENGADINKKNSDGETPLYCL-LSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHH-IDIEII 164 (489)
T ss_pred HHHHHHHHHHCCCCCCCCCCCcCcHHHHH-HHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCc-chHHHH
Confidence 45666667777633222222223333323 332221 22445555566665554321 11233444444440 112333
Q ss_pred HHHHhCCCCCC
Q 036198 331 EEMGNKGYPPD 341 (499)
Q Consensus 331 ~~m~~~~~~p~ 341 (499)
+.+.+.|..++
T Consensus 165 ~~Ll~~gadin 175 (489)
T PHA02798 165 KLLLEKGVDIN 175 (489)
T ss_pred HHHHHhCCCcc
Confidence 44445555443
No 482
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=20.63 E-value=2.8e+02 Score=19.95 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
+.|+...|+.++......+.+.-|..++.+..
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 34666666666666666555555555554443
No 483
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.53 E-value=3.3e+02 Score=19.40 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~ 264 (499)
++++.+.++.-.++|+++.+.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35666778888899999999998888
No 484
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.26 E-value=9.1e+02 Score=24.46 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=48.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036198 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI---------SSPTAKTYAIMIVALVQNDRMEECFSLL 295 (499)
Q Consensus 225 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 295 (499)
+.+.|+..+......++... .|++..|...++.+...+... ..+.......+++++ ..++..+|+.++
T Consensus 188 ~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l 264 (504)
T PRK14963 188 LEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGA 264 (504)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 33557777777666665554 478888888887765543110 011222334455554 557888888888
Q ss_pred HHHHHcCCCcC
Q 036198 296 GHMINSGCLPD 306 (499)
Q Consensus 296 ~~m~~~~~~~~ 306 (499)
+++...|..|.
T Consensus 265 ~~Ll~~G~~~~ 275 (504)
T PRK14963 265 AQLYRDGFAAR 275 (504)
T ss_pred HHHHHcCCCHH
Confidence 88888875543
Done!