Query 036198
Match_columns 499
No_of_seqs 536 out of 2990
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 17:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-32 4.5E-37 281.2 35.7 455 9-488 82-591 (597)
2 4g26_A Pentatricopeptide repea 100.0 2.4E-32 8.3E-37 268.9 25.0 201 222-425 13-223 (501)
3 4g26_A Pentatricopeptide repea 100.0 2.1E-32 7.1E-37 269.4 23.8 207 251-460 7-223 (501)
4 2xpi_A Anaphase-promoting comp 100.0 1E-29 3.5E-34 259.8 39.0 414 50-488 82-557 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-22 6.2E-27 194.6 43.8 335 92-488 46-380 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.1E-21 1.4E-25 185.1 42.5 353 48-462 29-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.8E-20 6.2E-25 184.2 36.9 313 114-488 25-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.2E-19 1.8E-23 173.8 37.7 350 47-474 21-407 (450)
9 2gw1_A Mitochondrial precursor 99.9 6.7E-19 2.3E-23 175.9 35.7 352 93-484 20-486 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 1.3E-17 4.6E-22 158.1 39.2 317 114-490 2-349 (359)
11 2gw1_A Mitochondrial precursor 99.8 9.6E-18 3.3E-22 167.5 34.1 339 115-487 6-455 (514)
12 3fp2_A TPR repeat-containing p 99.8 5.8E-17 2E-21 162.9 36.3 347 96-482 42-497 (537)
13 3hym_B Cell division cycle pro 99.8 6.5E-17 2.2E-21 151.6 31.3 294 112-464 19-322 (330)
14 3hym_B Cell division cycle pro 99.8 6.1E-17 2.1E-21 151.7 29.9 286 173-489 18-312 (330)
15 3spa_A Mtrpol, DNA-directed RN 99.8 1.9E-19 6.7E-24 182.3 11.8 119 271-389 126-248 (1134)
16 3ieg_A DNAJ homolog subfamily 99.8 3E-15 1E-19 141.8 38.3 315 93-458 17-351 (359)
17 3spa_A Mtrpol, DNA-directed RN 99.8 4.6E-19 1.6E-23 179.6 9.9 154 303-461 123-286 (1134)
18 1fch_A Peroxisomal targeting s 99.8 1E-16 3.4E-21 152.9 25.5 271 176-476 63-359 (368)
19 3fp2_A TPR repeat-containing p 99.8 1.3E-15 4.3E-20 153.1 32.7 336 115-487 25-468 (537)
20 4eqf_A PEX5-related protein; a 99.7 2.2E-16 7.4E-21 150.6 23.9 266 176-472 64-352 (365)
21 3cv0_A Peroxisome targeting si 99.7 3.4E-16 1.2E-20 146.4 24.2 272 176-478 20-317 (327)
22 4eqf_A PEX5-related protein; a 99.7 4.8E-16 1.6E-20 148.2 24.1 271 114-437 64-352 (365)
23 1fch_A Peroxisomal targeting s 99.7 3E-15 1E-19 142.6 28.7 267 187-480 35-318 (368)
24 3mkr_A Coatomer subunit epsilo 99.7 8E-15 2.7E-19 134.6 28.6 258 184-482 6-270 (291)
25 3cv0_A Peroxisome targeting si 99.7 2.2E-15 7.5E-20 140.9 24.9 267 114-438 20-312 (327)
26 2xm6_A Protein corresponding t 99.7 3.7E-12 1.3E-16 126.3 46.5 326 93-478 57-434 (490)
27 3mkr_A Coatomer subunit epsilo 99.7 9.4E-14 3.2E-18 127.5 29.5 248 131-442 11-265 (291)
28 1b89_A Protein (clathrin heavy 99.7 1.5E-15 5.1E-20 143.0 16.9 289 83-468 8-303 (449)
29 2ooe_A Cleavage stimulation fa 99.6 2.1E-12 7.2E-17 129.4 38.8 430 8-480 9-496 (530)
30 2xm6_A Protein corresponding t 99.6 2.3E-11 8E-16 120.5 45.1 321 114-486 38-406 (490)
31 2ooe_A Cleavage stimulation fa 99.6 8.7E-12 3E-16 124.9 40.5 183 290-477 256-455 (530)
32 1ouv_A Conserved hypothetical 99.6 3.6E-12 1.2E-16 115.9 34.0 232 233-485 5-260 (273)
33 1b89_A Protein (clathrin heavy 99.6 2.7E-15 9.2E-20 141.3 13.3 240 131-460 15-254 (449)
34 3uq3_A Heat shock protein STI1 99.6 5.2E-13 1.8E-17 120.0 27.4 228 233-477 4-237 (258)
35 4g1t_A Interferon-induced prot 99.6 1E-12 3.5E-17 129.7 31.9 333 114-486 93-469 (472)
36 2pl2_A Hypothetical conserved 99.6 3.1E-13 1.1E-17 118.4 22.1 209 232-473 3-211 (217)
37 2ho1_A Type 4 fimbrial biogene 99.6 2.8E-12 9.6E-17 114.9 27.7 201 234-441 37-238 (252)
38 2pl2_A Hypothetical conserved 99.6 3.7E-13 1.3E-17 117.9 21.3 179 304-487 2-191 (217)
39 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-12 6.6E-17 116.0 26.4 208 272-483 37-245 (252)
40 2vq2_A PILW, putative fimbrial 99.6 2.2E-12 7.7E-17 113.2 26.2 201 233-439 7-209 (225)
41 3uq3_A Heat shock protein STI1 99.6 1.2E-12 4E-17 117.6 24.2 229 177-442 5-237 (258)
42 2vq2_A PILW, putative fimbrial 99.6 4.8E-12 1.7E-16 111.0 27.5 214 269-485 5-220 (225)
43 3u4t_A TPR repeat-containing p 99.6 9.8E-13 3.4E-17 119.4 23.2 244 233-483 2-257 (272)
44 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.3E-13 3.2E-17 119.7 21.5 250 189-470 17-269 (275)
45 1xi4_A Clathrin heavy chain; a 99.5 1.9E-10 6.4E-15 121.1 40.0 356 75-480 947-1313(1630)
46 3u4t_A TPR repeat-containing p 99.5 6.8E-12 2.3E-16 113.8 26.1 251 178-456 4-264 (272)
47 1ouv_A Conserved hypothetical 99.5 4.3E-11 1.5E-15 108.7 31.4 224 176-442 5-252 (273)
48 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-12 5.4E-17 115.7 21.3 203 232-442 21-223 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.8E-13 3.4E-17 119.5 20.2 232 245-482 16-250 (275)
50 2h6f_A Protein farnesyltransfe 99.5 7.7E-12 2.6E-16 118.8 26.8 238 234-481 97-353 (382)
51 2q7f_A YRRB protein; TPR, prot 99.5 1.5E-12 5.2E-17 115.9 20.9 213 270-487 21-233 (243)
52 4g1t_A Interferon-induced prot 99.5 1.6E-10 5.3E-15 113.9 34.6 325 113-480 49-405 (472)
53 4a1s_A PINS, partner of inscut 99.5 3E-12 1E-16 123.8 21.2 284 177-484 48-380 (411)
54 3sf4_A G-protein-signaling mod 99.5 6.5E-12 2.2E-16 121.0 22.7 308 113-464 7-364 (406)
55 2h6f_A Protein farnesyltransfe 99.5 2.1E-11 7.1E-16 115.8 25.4 249 177-458 97-364 (382)
56 2ond_A Cleavage stimulation fa 99.4 1.5E-10 5.1E-15 107.2 29.5 223 251-481 33-275 (308)
57 3sf4_A G-protein-signaling mod 99.4 5.7E-12 2E-16 121.4 20.7 284 174-478 6-338 (406)
58 3ro2_A PINS homolog, G-protein 99.4 5.1E-12 1.7E-16 118.1 19.4 281 178-479 6-335 (338)
59 3ro2_A PINS homolog, G-protein 99.4 1.6E-11 5.4E-16 114.7 22.0 280 118-441 8-332 (338)
60 1xi4_A Clathrin heavy chain; a 99.4 1.1E-09 3.8E-14 115.3 35.5 381 2-468 978-1376(1630)
61 4a1s_A PINS, partner of inscut 99.4 2.1E-11 7.2E-16 117.8 21.4 279 117-441 50-372 (411)
62 3ulq_A Response regulator aspa 99.4 7.2E-11 2.5E-15 113.0 23.4 288 187-479 22-371 (383)
63 2ond_A Cleavage stimulation fa 99.4 3.6E-10 1.2E-14 104.6 26.9 219 136-406 33-270 (308)
64 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-10 9.6E-15 96.5 22.6 167 233-406 4-170 (184)
65 3vtx_A MAMA; tetratricopeptide 99.4 2.5E-10 8.6E-15 96.8 22.2 170 306-479 4-173 (184)
66 3nf1_A KLC 1, kinesin light ch 99.3 2.7E-11 9.3E-16 112.0 17.2 179 175-370 25-223 (311)
67 3nf1_A KLC 1, kinesin light ch 99.3 6.2E-11 2.1E-15 109.5 19.2 246 232-478 25-309 (311)
68 3q15_A PSP28, response regulat 99.3 8.1E-10 2.8E-14 105.4 27.4 301 175-479 8-368 (378)
69 4abn_A Tetratricopeptide repea 99.3 7E-11 2.4E-15 116.3 19.6 215 250-473 84-318 (474)
70 4abn_A Tetratricopeptide repea 99.3 1.8E-10 6.2E-15 113.3 20.0 198 232-437 100-317 (474)
71 1hz4_A MALT regulatory protein 99.3 4.3E-09 1.5E-13 100.1 28.0 281 180-478 17-324 (373)
72 3ulq_A Response regulator aspa 99.3 1.2E-09 4.1E-14 104.5 24.2 238 182-440 108-367 (383)
73 3e4b_A ALGK; tetratricopeptide 99.2 1.2E-09 4.3E-14 106.6 23.7 336 121-488 9-399 (452)
74 4e6h_A MRNA 3'-END-processing 99.2 5.1E-08 1.7E-12 98.9 35.6 224 251-480 326-574 (679)
75 3as5_A MAMA; tetratricopeptide 99.2 2.1E-09 7E-14 90.7 21.5 164 178-370 9-172 (186)
76 3edt_B KLC 2, kinesin light ch 99.2 2.8E-10 9.4E-15 103.4 17.0 167 187-370 11-197 (283)
77 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.7E-14 92.4 19.5 167 309-479 10-176 (186)
78 3q15_A PSP28, response regulat 99.2 2.9E-08 1E-12 94.6 30.0 236 182-440 106-364 (378)
79 3e4b_A ALGK; tetratricopeptide 99.2 2.2E-08 7.4E-13 97.8 29.3 226 233-478 175-423 (452)
80 1hz4_A MALT regulatory protein 99.2 1.3E-08 4.6E-13 96.7 26.4 274 131-441 26-322 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.2 3.2E-09 1.1E-13 108.9 22.1 166 233-405 8-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.1 3.2E-09 1.1E-13 108.9 20.3 164 272-439 9-172 (723)
83 3edt_B KLC 2, kinesin light ch 99.1 9.2E-10 3.2E-14 99.9 14.0 231 245-476 12-281 (283)
84 4i17_A Hypothetical protein; T 99.1 1.7E-08 5.9E-13 88.6 20.8 206 269-486 4-219 (228)
85 3mv2_B Coatomer subunit epsilo 99.1 2.9E-08 9.8E-13 89.6 22.2 221 238-482 49-288 (310)
86 4i17_A Hypothetical protein; T 99.1 4.6E-08 1.6E-12 85.8 22.6 196 232-442 5-210 (228)
87 4e6h_A MRNA 3'-END-processing 99.0 1.2E-06 4.1E-11 88.9 34.9 170 306-478 342-535 (679)
88 2fo7_A Synthetic consensus TPR 99.0 3.8E-08 1.3E-12 77.8 17.6 129 236-370 3-131 (136)
89 1qqe_A Vesicular transport pro 99.0 2.3E-08 7.9E-13 91.6 17.8 168 309-476 79-269 (292)
90 1qqe_A Vesicular transport pro 99.0 9.6E-08 3.3E-12 87.4 21.5 169 184-370 44-227 (292)
91 2fo7_A Synthetic consensus TPR 99.0 6E-08 2E-12 76.7 17.4 131 345-478 4-134 (136)
92 3qky_A Outer membrane assembly 98.9 1.3E-07 4.4E-12 84.9 19.1 193 269-482 12-230 (261)
93 3qky_A Outer membrane assembly 98.9 1.2E-07 4.2E-12 85.1 18.6 190 232-441 13-224 (261)
94 3urz_A Uncharacterized protein 98.9 2.2E-07 7.4E-12 80.3 18.4 180 235-441 5-186 (208)
95 3rjv_A Putative SEL1 repeat pr 98.8 4.2E-07 1.4E-11 78.7 19.8 140 253-405 5-157 (212)
96 3dra_A Protein farnesyltransfe 98.8 3.6E-06 1.2E-10 76.6 26.6 236 241-484 39-295 (306)
97 3mv2_B Coatomer subunit epsilo 98.8 1.8E-07 6E-12 84.5 17.3 60 276-335 104-164 (310)
98 3rjv_A Putative SEL1 repeat pr 98.8 1.2E-06 4E-11 75.9 21.8 186 289-486 3-207 (212)
99 2pzi_A Probable serine/threoni 98.8 1.3E-07 4.5E-12 97.2 17.5 172 283-461 402-582 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.7E-07 3E-11 77.5 20.3 186 233-442 3-214 (225)
101 3urz_A Uncharacterized protein 98.8 4.7E-07 1.6E-11 78.1 18.0 188 177-380 4-193 (208)
102 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.9E-07 1.7E-11 79.1 18.0 190 271-480 3-217 (225)
103 3qou_A Protein YBBN; thioredox 98.8 5.1E-07 1.7E-11 82.3 18.3 167 231-404 114-282 (287)
104 3u3w_A Transcriptional activat 98.7 2.2E-06 7.6E-11 78.3 22.6 127 241-369 82-223 (293)
105 2pzi_A Probable serine/threoni 98.7 1.7E-07 5.8E-12 96.4 15.6 173 245-427 402-583 (681)
106 2vsy_A XCC0866; transferase, g 98.7 3.7E-07 1.3E-11 92.1 17.7 155 285-443 2-159 (568)
107 2r5s_A Uncharacterized protein 98.7 2.7E-07 9.3E-12 77.3 13.8 161 237-404 9-171 (176)
108 2r5s_A Uncharacterized protein 98.7 3.5E-07 1.2E-11 76.6 13.7 158 312-474 11-171 (176)
109 3u3w_A Transcriptional activat 98.7 5.2E-06 1.8E-10 75.8 22.2 167 312-478 80-268 (293)
110 3qou_A Protein YBBN; thioredox 98.7 1E-06 3.5E-11 80.3 17.3 165 306-474 116-282 (287)
111 3dra_A Protein farnesyltransfe 98.7 2.7E-05 9.1E-10 70.9 26.2 223 188-441 43-287 (306)
112 2vsy_A XCC0866; transferase, g 98.6 8.4E-07 2.9E-11 89.4 18.0 134 233-372 22-158 (568)
113 2ifu_A Gamma-SNAP; membrane fu 98.6 9.8E-07 3.4E-11 81.3 17.0 219 247-468 4-253 (307)
114 2uy1_A Cleavage stimulation fa 98.6 0.00015 5E-09 71.2 32.7 332 93-476 28-413 (493)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.1E-06 2.1E-10 71.1 20.1 129 179-337 8-151 (213)
116 4ga2_A E3 SUMO-protein ligase 98.6 2.2E-07 7.4E-12 75.6 10.0 83 312-396 36-118 (150)
117 4ga2_A E3 SUMO-protein ligase 98.6 2.4E-07 8.3E-12 75.3 10.3 83 238-325 35-117 (150)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.7E-06 2E-10 71.3 19.5 130 235-372 7-151 (213)
119 2qfc_A PLCR protein; TPR, HTH, 98.6 1.3E-05 4.3E-10 73.2 21.5 165 236-402 77-262 (293)
120 3q7a_A Farnesyltransferase alp 98.5 4.2E-05 1.4E-09 70.4 24.6 231 245-483 65-338 (349)
121 2ifu_A Gamma-SNAP; membrane fu 98.5 4.3E-06 1.5E-10 76.9 18.1 203 131-369 3-222 (307)
122 2qfc_A PLCR protein; TPR, HTH, 98.5 9E-06 3.1E-10 74.2 19.5 176 178-370 76-265 (293)
123 1a17_A Serine/threonine protei 98.5 6.2E-06 2.1E-10 67.7 16.8 130 234-369 13-144 (166)
124 1na0_A Designed protein CTPR3; 98.5 6.4E-06 2.2E-10 63.7 15.6 98 234-336 9-106 (125)
125 4gco_A Protein STI-1; structur 98.4 9.5E-06 3.3E-10 63.4 15.0 97 235-336 14-110 (126)
126 3gw4_A Uncharacterized protein 98.4 2.8E-06 9.7E-11 72.5 13.1 157 319-476 4-176 (203)
127 3gw4_A Uncharacterized protein 98.4 3.6E-06 1.2E-10 71.9 13.7 155 245-403 3-173 (203)
128 2vyi_A SGTA protein; chaperone 98.4 9.6E-06 3.3E-10 63.3 15.1 118 234-357 12-129 (131)
129 1a17_A Serine/threonine protei 98.4 9.9E-06 3.4E-10 66.4 15.8 132 343-477 14-147 (166)
130 2lni_A Stress-induced-phosphop 98.4 8.7E-06 3E-10 63.9 14.3 116 233-354 15-130 (133)
131 3gyz_A Chaperone protein IPGC; 98.4 4.5E-06 1.5E-10 67.6 12.3 98 234-336 36-133 (151)
132 1na0_A Designed protein CTPR3; 98.4 2E-05 6.8E-10 60.8 15.4 98 272-371 9-106 (125)
133 2lni_A Stress-induced-phosphop 98.4 1.9E-05 6.4E-10 61.9 15.3 120 174-321 13-132 (133)
134 2e2e_A Formate-dependent nitri 98.4 5.5E-06 1.9E-10 69.1 12.7 122 245-372 21-145 (177)
135 3q7a_A Farnesyltransferase alp 98.3 0.00034 1.2E-08 64.4 25.1 231 181-441 58-331 (349)
136 4gco_A Protein STI-1; structur 98.3 2.1E-05 7.3E-10 61.4 14.9 97 381-479 17-113 (126)
137 4f3v_A ESX-1 secretion system 98.3 2.1E-05 7.1E-10 70.0 16.3 129 348-479 108-240 (282)
138 3gyz_A Chaperone protein IPGC; 98.3 2.2E-05 7.6E-10 63.4 15.2 103 377-481 36-138 (151)
139 2vyi_A SGTA protein; chaperone 98.3 2.9E-05 9.8E-10 60.4 15.4 120 271-393 11-130 (131)
140 2c2l_A CHIP, carboxy terminus 98.3 5.8E-06 2E-10 74.9 12.5 96 234-334 4-99 (281)
141 2c2l_A CHIP, carboxy terminus 98.3 4.2E-06 1.4E-10 75.9 11.4 194 271-476 3-199 (281)
142 4f3v_A ESX-1 secretion system 98.3 3.1E-05 1.1E-09 68.9 16.5 197 246-453 18-247 (282)
143 3dss_A Geranylgeranyl transfer 98.3 0.0016 5.3E-08 59.7 27.9 236 243-488 38-316 (331)
144 1p5q_A FKBP52, FK506-binding p 98.3 2.2E-05 7.4E-10 73.2 15.7 96 378-475 197-293 (336)
145 1p5q_A FKBP52, FK506-binding p 98.3 2.7E-05 9.2E-10 72.5 16.1 132 233-368 146-291 (336)
146 2vgx_A Chaperone SYCD; alterna 98.3 1.1E-05 3.8E-10 65.1 11.8 97 379-477 23-119 (148)
147 2e2e_A Formate-dependent nitri 98.3 1.1E-05 3.8E-10 67.2 12.2 122 318-442 21-145 (177)
148 2uy1_A Cleavage stimulation fa 98.2 0.0011 3.7E-08 65.0 28.0 313 114-473 14-380 (493)
149 1elw_A TPR1-domain of HOP; HOP 98.2 7E-05 2.4E-09 57.0 15.7 98 234-336 4-101 (118)
150 2vgx_A Chaperone SYCD; alterna 98.2 9.2E-06 3.1E-10 65.6 10.3 93 275-369 24-116 (148)
151 3upv_A Heat shock protein STI1 98.2 5E-05 1.7E-09 59.1 14.1 98 234-336 4-101 (126)
152 3upv_A Heat shock protein STI1 98.1 9.4E-05 3.2E-09 57.5 14.6 96 380-477 7-102 (126)
153 2kck_A TPR repeat; tetratricop 98.1 3.2E-05 1.1E-09 58.3 11.7 98 234-336 6-106 (112)
154 4b4t_Q 26S proteasome regulato 98.1 0.00017 5.9E-09 69.5 19.6 200 241-440 11-244 (434)
155 1elw_A TPR1-domain of HOP; HOP 98.1 8.6E-05 2.9E-09 56.4 13.9 97 343-441 5-101 (118)
156 4b4t_Q 26S proteasome regulato 98.1 0.00016 5.5E-09 69.7 18.9 200 279-478 11-247 (434)
157 2xcb_A PCRH, regulatory protei 98.1 6.6E-05 2.3E-09 59.9 13.4 97 235-336 19-115 (142)
158 3q49_B STIP1 homology and U bo 98.1 0.00011 3.7E-09 58.0 14.6 98 233-335 8-105 (137)
159 2xcb_A PCRH, regulatory protei 98.1 5.7E-05 2E-09 60.3 12.7 93 346-440 22-114 (142)
160 1elr_A TPR2A-domain of HOP; HO 98.1 5.7E-05 1.9E-09 58.7 12.5 99 234-336 4-108 (131)
161 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00011 3.7E-09 60.2 14.4 99 233-336 10-108 (164)
162 2fbn_A 70 kDa peptidylprolyl i 98.1 7.9E-05 2.7E-09 63.3 14.0 123 234-360 38-174 (198)
163 2dba_A Smooth muscle cell asso 98.1 0.00022 7.5E-09 56.8 15.9 98 176-301 27-128 (148)
164 2kck_A TPR repeat; tetratricop 98.0 5.3E-05 1.8E-09 57.1 11.2 98 379-478 8-108 (112)
165 1elr_A TPR2A-domain of HOP; HO 98.0 7.6E-05 2.6E-09 58.0 12.3 98 273-371 5-108 (131)
166 2dba_A Smooth muscle cell asso 98.0 0.00021 7.2E-09 57.0 15.1 97 379-478 30-130 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.0 9.7E-05 3.3E-09 60.6 13.3 100 341-442 10-109 (164)
168 4gcn_A Protein STI-1; structur 98.0 0.00015 5.1E-09 56.6 13.7 97 235-335 9-111 (127)
169 3q49_B STIP1 homology and U bo 98.0 0.00017 5.8E-09 56.8 14.2 100 269-370 6-105 (137)
170 4gcn_A Protein STI-1; structur 98.0 0.00015 5.1E-09 56.6 13.5 97 273-370 9-111 (127)
171 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00013 4.5E-09 61.9 14.0 147 177-335 38-185 (198)
172 3ro3_A PINS homolog, G-protein 98.0 6E-05 2.1E-09 61.1 11.4 135 344-478 11-160 (164)
173 1hxi_A PEX5, peroxisome target 97.9 0.00013 4.3E-09 56.4 11.8 96 236-336 19-114 (121)
174 2xev_A YBGF; tetratricopeptide 97.9 0.00019 6.5E-09 55.8 12.9 65 414-479 41-108 (129)
175 3ro3_A PINS homolog, G-protein 97.9 0.00012 4E-09 59.3 11.8 60 310-369 52-116 (164)
176 3dss_A Geranylgeranyl transfer 97.9 0.0063 2.2E-07 55.6 24.1 112 233-350 107-235 (331)
177 1hxi_A PEX5, peroxisome target 97.9 0.00014 4.9E-09 56.1 11.0 96 381-478 21-116 (121)
178 2xev_A YBGF; tetratricopeptide 97.8 0.0012 4E-08 51.1 15.2 96 239-336 7-105 (129)
179 3k9i_A BH0479 protein; putativ 97.8 6.1E-05 2.1E-09 57.8 7.4 86 355-441 3-90 (117)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00051 1.8E-08 66.8 15.6 124 234-361 268-404 (457)
181 1wao_1 Serine/threonine protei 97.8 0.0001 3.5E-09 72.2 10.6 122 239-366 11-134 (477)
182 3n71_A Histone lysine methyltr 97.8 0.00021 7.2E-09 69.6 12.4 88 245-332 320-418 (490)
183 3rkv_A Putative peptidylprolyl 97.7 0.0034 1.2E-07 50.9 17.2 106 177-301 11-126 (162)
184 1ihg_A Cyclophilin 40; ppiase 97.7 0.00051 1.8E-08 64.6 13.4 138 235-397 224-361 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00062 2.1E-08 66.2 14.4 123 307-431 268-404 (457)
186 3n71_A Histone lysine methyltr 97.7 0.00023 7.8E-09 69.4 11.0 124 282-405 319-463 (490)
187 1wao_1 Serine/threonine protei 97.6 0.00021 7.1E-09 69.9 10.6 121 278-401 12-134 (477)
188 3rkv_A Putative peptidylprolyl 97.6 0.0011 3.7E-08 54.0 13.3 103 233-336 10-126 (162)
189 3k9i_A BH0479 protein; putativ 97.6 0.00016 5.3E-09 55.4 6.9 86 247-334 3-88 (117)
190 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00021 7.3E-09 66.4 9.1 154 307-481 179-333 (338)
191 1ihg_A Cyclophilin 40; ppiase 97.6 0.0011 3.8E-08 62.3 13.9 140 273-434 224-363 (370)
192 1klx_A Cysteine rich protein B 97.5 0.0034 1.2E-07 49.5 14.1 111 357-478 10-128 (138)
193 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00043 1.5E-08 64.4 9.7 148 234-406 179-328 (338)
194 1klx_A Cysteine rich protein B 97.4 0.0062 2.1E-07 48.0 14.6 110 249-372 10-127 (138)
195 2hr2_A Hypothetical protein; a 97.4 0.0018 6.2E-08 51.9 11.2 66 414-479 59-134 (159)
196 1dce_A Protein (RAB geranylger 97.4 0.011 3.9E-07 58.8 19.5 137 323-463 89-242 (567)
197 2hr2_A Hypothetical protein; a 97.4 0.0035 1.2E-07 50.3 12.5 65 234-300 11-85 (159)
198 1dce_A Protein (RAB geranylger 97.3 0.012 4.2E-07 58.5 18.1 160 322-485 44-230 (567)
199 1na3_A Designed protein CTPR2; 97.2 0.0052 1.8E-07 43.8 11.3 80 234-318 9-88 (91)
200 2l6j_A TPR repeat-containing p 97.2 0.0016 5.4E-08 48.7 8.5 65 233-301 3-67 (111)
201 2kat_A Uncharacterized protein 97.1 0.0041 1.4E-07 47.0 10.4 77 361-439 4-80 (115)
202 2kat_A Uncharacterized protein 97.1 0.0042 1.4E-07 46.9 10.3 77 253-334 4-80 (115)
203 2l6j_A TPR repeat-containing p 97.1 0.0033 1.1E-07 46.9 9.1 64 272-336 4-67 (111)
204 1na3_A Designed protein CTPR2; 97.0 0.0089 3.1E-07 42.5 10.8 64 272-336 9-72 (91)
205 3ma5_A Tetratricopeptide repea 96.8 0.0097 3.3E-07 43.7 9.1 64 233-300 6-69 (100)
206 3ma5_A Tetratricopeptide repea 96.7 0.0085 2.9E-07 44.0 8.8 62 377-439 7-68 (100)
207 3qwp_A SET and MYND domain-con 96.7 0.021 7E-07 54.7 13.1 89 281-369 296-398 (429)
208 1zu2_A Mitochondrial import re 96.6 0.0069 2.4E-07 48.4 7.8 39 246-288 14-52 (158)
209 3qww_A SET and MYND domain-con 96.6 0.01 3.5E-07 56.8 10.4 62 308-369 341-409 (433)
210 1zu2_A Mitochondrial import re 96.6 0.0079 2.7E-07 48.1 8.0 101 284-388 14-135 (158)
211 3ly7_A Transcriptional activat 96.5 0.067 2.3E-06 49.2 14.7 135 230-370 190-338 (372)
212 3mkq_A Coatomer beta'-subunit; 96.5 0.046 1.6E-06 57.1 15.8 129 276-437 633-761 (814)
213 3qww_A SET and MYND domain-con 96.5 0.0065 2.2E-07 58.1 8.3 71 177-262 340-410 (433)
214 3qwp_A SET and MYND domain-con 96.3 0.016 5.5E-07 55.4 9.9 91 314-404 294-398 (429)
215 3ly7_A Transcriptional activat 96.2 0.13 4.4E-06 47.4 14.4 72 375-450 275-346 (372)
216 3mkq_A Coatomer beta'-subunit; 96.2 0.15 5.2E-06 53.2 17.3 131 236-402 631-761 (814)
217 3mkq_B Coatomer subunit alpha; 96.0 0.22 7.4E-06 40.4 13.3 131 314-474 12-142 (177)
218 3bee_A Putative YFRE protein; 95.9 0.072 2.5E-06 38.3 9.5 68 411-479 5-75 (93)
219 1wy6_A Hypothetical protein ST 95.7 0.49 1.7E-05 36.1 16.7 65 414-479 93-157 (172)
220 1pc2_A Mitochondria fission pr 95.7 0.14 4.8E-06 40.4 10.9 84 395-480 16-104 (152)
221 2kc7_A BFR218_protein; tetratr 95.6 0.09 3.1E-06 37.9 9.4 58 240-301 6-64 (99)
222 3mkq_B Coatomer subunit alpha; 95.5 0.6 2.1E-05 37.8 14.2 81 176-296 33-113 (177)
223 2kc7_A BFR218_protein; tetratr 95.4 0.078 2.7E-06 38.3 8.2 59 383-442 6-65 (99)
224 1wy6_A Hypothetical protein ST 95.3 0.7 2.4E-05 35.3 14.4 144 238-409 9-157 (172)
225 2v5f_A Prolyl 4-hydroxylase su 95.0 0.29 9.8E-06 35.9 10.4 65 377-441 5-75 (104)
226 3bee_A Putative YFRE protein; 94.9 0.39 1.3E-05 34.4 10.6 65 233-301 5-72 (93)
227 3u64_A Protein TP_0956; tetrat 94.8 0.18 6.2E-06 44.5 9.9 110 358-477 179-299 (301)
228 2v5f_A Prolyl 4-hydroxylase su 94.2 0.6 2E-05 34.1 10.3 26 309-334 48-73 (104)
229 4h7y_A Dual specificity protei 94.1 1.5 5.2E-05 34.2 12.3 114 341-457 12-138 (161)
230 1pc2_A Mitochondria fission pr 93.7 0.7 2.4E-05 36.4 10.2 81 251-336 15-100 (152)
231 1nzn_A CGI-135 protein, fissio 93.1 0.47 1.6E-05 36.0 7.9 84 393-478 17-105 (126)
232 3u64_A Protein TP_0956; tetrat 93.0 1.2 4.1E-05 39.3 11.5 93 250-347 179-282 (301)
233 4h7y_A Dual specificity protei 92.6 2.4 8.2E-05 33.1 11.3 31 233-263 12-48 (161)
234 2ff4_A Probable regulatory pro 91.6 3 0.0001 39.0 13.5 129 233-380 111-248 (388)
235 1v54_E Cytochrome C oxidase po 90.8 2.3 8E-05 30.5 8.7 62 170-231 38-99 (109)
236 2ff4_A Probable regulatory pro 90.5 11 0.00038 35.1 18.5 124 176-310 111-248 (388)
237 4fhn_B Nucleoporin NUP120; pro 90.5 14 0.00048 40.1 19.1 146 175-325 840-989 (1139)
238 1nzn_A CGI-135 protein, fissio 90.2 2 7E-05 32.5 8.6 22 349-370 81-102 (126)
239 4gns_B Protein CSD3, chitin bi 89.2 2.3 7.7E-05 43.4 10.8 52 421-473 346-397 (754)
240 4gns_B Protein CSD3, chitin bi 89.1 21 0.00072 36.4 17.7 56 240-299 343-398 (754)
241 2y69_E Cytochrome C oxidase su 87.2 4.9 0.00017 30.6 8.7 63 169-231 80-142 (152)
242 4fhn_B Nucleoporin NUP120; pro 87.0 16 0.00054 39.7 16.5 190 279-476 819-1050(1139)
243 3txn_A 26S proteasome regulato 86.8 20 0.00068 33.3 16.1 165 273-438 20-207 (394)
244 1wdy_A 2-5A-dependent ribonucl 86.7 3.4 0.00012 36.2 9.5 22 181-202 6-27 (285)
245 1v54_E Cytochrome C oxidase po 86.5 7.2 0.00025 28.0 9.4 50 427-476 25-74 (109)
246 4b4t_P 26S proteasome regulato 85.8 25 0.00084 33.5 18.4 190 247-439 29-245 (445)
247 3lvg_A Clathrin heavy chain 1; 84.5 0.00088 3E-08 63.0 -15.4 247 176-475 53-319 (624)
248 3o48_A Mitochondria fission 1 83.9 11 0.00037 28.7 9.4 69 410-478 38-109 (134)
249 2y69_E Cytochrome C oxidase su 81.5 16 0.00053 27.9 9.4 50 427-476 68-117 (152)
250 4b4t_P 26S proteasome regulato 81.3 38 0.0013 32.2 21.5 190 230-438 52-264 (445)
251 3eiq_C Programmed cell death p 79.0 26 0.0009 32.0 12.0 214 236-461 56-302 (358)
252 1y8m_A FIS1; mitochondria, unk 78.6 21 0.00071 27.6 11.6 69 410-478 37-108 (144)
253 4b4t_R RPN7, 26S proteasome re 78.3 18 0.0006 34.3 11.3 100 236-336 133-237 (429)
254 2zu6_B Programmed cell death p 75.6 44 0.0015 29.8 12.5 80 380-460 169-250 (307)
255 1wdy_A 2-5A-dependent ribonucl 75.2 6.1 0.00021 34.4 6.8 84 313-400 151-239 (285)
256 1zbp_A Hypothetical protein VP 75.2 30 0.001 30.1 10.5 116 242-371 5-129 (273)
257 3kea_A K1L; tropism, ANK repea 74.1 17 0.00057 32.0 9.4 174 240-436 65-242 (285)
258 1k1a_A B-cell lymphoma 3-encod 73.4 17 0.00057 30.6 9.1 89 240-333 12-102 (241)
259 3ffl_A Anaphase-promoting comp 73.2 15 0.0005 29.3 7.5 131 109-261 12-149 (167)
260 4b4t_R RPN7, 26S proteasome re 69.9 20 0.00069 33.8 9.3 98 344-441 133-237 (429)
261 2p58_C Putative type III secre 69.5 28 0.00096 24.9 7.4 10 354-363 52-61 (116)
262 1zbp_A Hypothetical protein VP 68.4 47 0.0016 28.8 10.3 59 422-481 7-65 (273)
263 1k1a_A B-cell lymphoma 3-encod 67.0 18 0.00062 30.4 7.9 22 183-204 12-33 (241)
264 3o48_A Mitochondria fission 1 66.4 41 0.0014 25.6 9.9 17 387-403 88-104 (134)
265 4ady_A RPN2, 26S proteasome re 64.9 1.4E+02 0.0048 31.3 21.0 168 282-458 500-672 (963)
266 4g8k_A 2-5A-dependent ribonucl 64.8 42 0.0014 30.1 10.2 150 279-447 172-329 (337)
267 3ffl_A Anaphase-promoting comp 64.8 30 0.001 27.5 7.6 118 344-474 22-149 (167)
268 3esl_A Checkpoint serine/threo 64.5 59 0.002 26.8 9.7 56 355-410 92-148 (202)
269 3eu9_A Huntingtin-interacting 63.9 21 0.00072 29.8 7.6 53 384-441 181-236 (240)
270 2uwj_G Type III export protein 63.3 33 0.0011 24.5 6.7 84 391-482 20-103 (115)
271 2nsz_A Programmed cell death p 61.6 48 0.0017 25.0 8.3 23 346-368 11-33 (129)
272 3eu9_A Huntingtin-interacting 61.3 9.6 0.00033 32.1 4.9 50 420-473 182-233 (240)
273 2nsz_A Programmed cell death p 60.4 51 0.0017 24.8 8.2 62 311-373 11-74 (129)
274 3lpz_A GET4 (YOR164C homolog); 58.3 1.1E+02 0.0036 27.7 19.3 169 274-476 37-216 (336)
275 3lvg_A Clathrin heavy chain 1; 56.9 0.19 6.6E-06 47.6 -7.0 204 114-390 53-276 (624)
276 3hra_A Ankyrin repeat family p 54.9 26 0.0009 28.3 6.4 15 432-446 158-172 (201)
277 3hra_A Ankyrin repeat family p 54.4 15 0.00052 29.8 4.9 19 184-202 9-27 (201)
278 2wpv_A GET4, UPF0363 protein Y 54.4 1.2E+02 0.0041 27.0 21.8 112 237-366 36-158 (312)
279 1y8m_A FIS1; mitochondria, unk 54.2 73 0.0025 24.5 11.5 21 385-405 85-105 (144)
280 4g8k_A 2-5A-dependent ribonucl 53.9 88 0.003 27.8 10.4 136 314-465 172-316 (337)
281 2ion_A PDCD4, programmed cell 53.9 43 0.0015 26.2 6.9 64 344-408 11-76 (152)
282 3aji_A 26S proteasome non-ATPa 52.8 48 0.0016 27.5 7.9 21 183-203 9-29 (231)
283 2fu4_A Ferric uptake regulatio 51.2 44 0.0015 22.5 6.1 61 402-463 7-68 (83)
284 2ion_A PDCD4, programmed cell 51.1 48 0.0017 25.9 6.9 62 311-373 13-76 (152)
285 2d2s_A Exocyst complex compone 50.7 81 0.0028 26.7 8.7 92 347-441 23-120 (235)
286 2p58_C Putative type III secre 50.7 66 0.0023 23.0 8.7 78 287-372 22-99 (116)
287 3b7b_A Euchromatic histone-lys 50.2 18 0.00063 30.3 4.8 114 314-440 115-235 (237)
288 1qsa_A Protein (soluble lytic 50.0 2E+02 0.007 28.5 31.5 323 10-370 6-347 (618)
289 3esl_A Checkpoint serine/threo 49.8 1.1E+02 0.0037 25.2 10.8 59 247-307 92-150 (202)
290 1qsa_A Protein (soluble lytic 49.5 2.1E+02 0.0071 28.4 24.3 116 356-475 228-347 (618)
291 3ljn_A Hypothetical protein; a 49.3 68 0.0023 29.0 8.9 26 176-202 17-42 (364)
292 3lpz_A GET4 (YOR164C homolog); 47.9 1.6E+02 0.0054 26.6 24.8 133 237-391 38-181 (336)
293 4ady_A RPN2, 26S proteasome re 47.8 2.7E+02 0.0093 29.3 30.5 124 352-481 500-628 (963)
294 4fke_A Aminopeptidase N; zinc 47.6 2.7E+02 0.0092 29.2 17.6 24 346-369 762-785 (909)
295 3b7b_A Euchromatic histone-lys 47.0 35 0.0012 28.5 6.1 208 240-475 14-235 (237)
296 3t8k_A Uncharacterized protein 46.4 1E+02 0.0036 24.6 8.7 64 313-376 41-108 (186)
297 4a1g_A Mitotic checkpoint seri 46.2 64 0.0022 25.2 6.7 54 251-306 82-135 (152)
298 3jxi_A Vanilloid receptor-rela 45.8 14 0.00049 31.6 3.4 22 455-476 230-251 (260)
299 2fe3_A Peroxide operon regulat 45.1 68 0.0023 24.7 6.9 37 390-426 34-70 (145)
300 2wvi_A Mitotic checkpoint seri 44.6 73 0.0025 25.2 6.9 55 251-307 77-131 (164)
301 2d2s_A Exocyst complex compone 44.1 1.5E+02 0.005 25.1 10.1 87 279-368 25-117 (235)
302 3t8k_A Uncharacterized protein 43.2 96 0.0033 24.9 8.0 24 241-264 42-65 (186)
303 2wvi_A Mitotic checkpoint seri 43.1 58 0.002 25.8 6.1 50 361-410 79-129 (164)
304 1n11_A Ankyrin; clathrin, BAND 42.7 42 0.0014 31.4 6.5 14 131-144 23-36 (437)
305 1mzb_A Ferric uptake regulatio 42.0 70 0.0024 24.2 6.5 59 368-427 9-68 (136)
306 4a1g_A Mitotic checkpoint seri 41.1 1.3E+02 0.0043 23.5 8.6 50 361-410 84-134 (152)
307 2xig_A Ferric uptake regulatio 41.0 86 0.0029 24.3 6.9 40 387-426 36-75 (150)
308 2rfa_A Transient receptor pote 38.6 78 0.0027 26.2 7.0 88 313-405 124-222 (232)
309 1n11_A Ankyrin; clathrin, BAND 37.9 1.6E+02 0.0054 27.3 9.7 236 184-447 117-372 (437)
310 1ug3_A EIF4GI, eukaryotic prot 36.9 1.2E+02 0.0039 27.5 8.1 25 275-299 14-38 (339)
311 2w57_A Ferric uptake regulatio 36.8 78 0.0027 24.5 6.1 59 368-427 8-67 (150)
312 2keb_A DNA polymerase subunit 36.8 1.1E+02 0.0038 21.6 6.2 57 395-453 27-88 (101)
313 3jxi_A Vanilloid receptor-rela 36.5 16 0.00053 31.4 2.1 194 240-440 8-250 (260)
314 3eyy_A Putative iron uptake re 35.7 62 0.0021 24.9 5.3 33 393-425 33-65 (145)
315 3txn_A 26S proteasome regulato 35.7 2.7E+02 0.0092 25.7 23.6 150 179-333 21-207 (394)
316 2wpv_A GET4, UPF0363 protein Y 35.6 2.4E+02 0.0081 25.1 20.1 171 179-369 35-215 (312)
317 3ltm_A Alpha-REP4; protein eng 34.5 1.8E+02 0.0062 23.4 17.2 186 251-462 18-203 (211)
318 4aez_C MAD3, mitotic spindle c 34.5 1.1E+02 0.0036 25.7 6.7 54 251-306 131-184 (223)
319 3rjo_A Endoplasmic reticulum a 32.0 3.1E+02 0.011 25.4 22.8 141 310-460 200-353 (419)
320 2ijq_A Hypothetical protein; s 31.4 1.3E+02 0.0046 23.6 6.4 52 389-440 44-103 (161)
321 1ug3_A EIF4GI, eukaryotic prot 31.3 1.6E+02 0.0054 26.6 8.0 148 237-402 14-166 (339)
322 3ljn_A Hypothetical protein; a 30.7 1.4E+02 0.0047 26.9 7.8 219 233-472 17-266 (364)
323 3kea_A K1L; tropism, ANK repea 30.5 1.1E+02 0.0038 26.5 6.8 194 254-472 44-243 (285)
324 4aez_C MAD3, mitotic spindle c 30.3 84 0.0029 26.3 5.4 51 360-410 132-183 (223)
325 2ijq_A Hypothetical protein; s 30.2 2E+02 0.0069 22.6 8.5 53 318-370 43-103 (161)
326 4ets_A Ferric uptake regulatio 30.1 1.1E+02 0.0036 24.1 5.9 69 359-428 14-85 (162)
327 3v31_A Ankyrin repeat family A 28.8 1.9E+02 0.0066 22.0 8.4 83 280-370 74-160 (167)
328 3utm_A Tankyrase-1; tankyrase, 28.0 3.1E+02 0.01 24.0 12.1 107 182-293 26-142 (351)
329 4fke_A Aminopeptidase N; zinc 27.6 5.5E+02 0.019 26.8 17.9 23 276-298 762-784 (909)
330 2fu4_A Ferric uptake regulatio 27.4 1.4E+02 0.0048 19.9 6.7 58 368-426 8-66 (83)
331 2o03_A Probable zinc uptake re 27.4 72 0.0025 24.0 4.3 45 383-427 16-60 (131)
332 2rfa_A Transient receptor pote 26.3 1.3E+02 0.0044 24.7 6.3 87 279-370 125-222 (232)
333 2xig_A Ferric uptake regulatio 26.0 2.2E+02 0.0077 21.8 7.6 61 332-393 17-77 (150)
334 3mwm_A ZUR, putative metal upt 25.5 70 0.0024 24.4 3.9 46 382-427 18-63 (139)
335 3aji_A 26S proteasome non-ATPa 25.3 1.5E+02 0.0051 24.3 6.5 113 239-365 8-126 (231)
336 3eiq_C Programmed cell death p 25.3 3.9E+02 0.013 24.3 16.0 27 179-205 56-82 (358)
337 2o03_A Probable zinc uptake re 24.5 1.6E+02 0.0056 21.9 5.8 48 347-394 15-62 (131)
338 2zu6_B Programmed cell death p 24.4 2E+02 0.0068 25.5 7.1 62 311-373 170-233 (307)
339 2b7e_A PRE-mRNA processing pro 23.4 61 0.0021 20.5 2.5 28 290-317 4-31 (59)
340 2keb_A DNA polymerase subunit 23.2 2E+02 0.007 20.3 5.9 32 291-322 28-59 (101)
341 2dzn_A Probable 26S proteasome 23.1 98 0.0034 25.3 4.9 21 183-203 5-25 (228)
342 3rjo_A Endoplasmic reticulum a 23.1 4.5E+02 0.015 24.3 18.1 31 342-372 267-297 (419)
343 2pnn_A Transient receptor pote 22.9 60 0.002 27.9 3.5 60 239-298 15-80 (273)
344 3ygs_P Procaspase 9; apoptosis 22.9 2E+02 0.0069 20.1 6.2 32 392-427 52-83 (97)
345 2fe3_A Peroxide operon regulat 22.8 2.5E+02 0.0087 21.3 7.3 60 333-393 13-72 (145)
346 1bd8_A P19INK4D CDK4/6 inhibit 22.3 62 0.0021 24.6 3.2 16 317-332 9-24 (156)
347 2cos_A Serine/threonine protei 21.7 1.1E+02 0.0039 18.8 3.4 36 433-473 11-48 (54)
348 3twr_A Tankyrase-2; ankyrin re 21.4 1.3E+02 0.0043 23.1 4.9 15 243-257 14-28 (165)
349 3mwm_A ZUR, putative metal upt 21.3 1.5E+02 0.0053 22.4 5.2 49 346-394 17-65 (139)
350 2y1l_E Darpin-8.4; hydrolase-i 21.2 2.7E+02 0.0091 21.3 6.9 23 180-202 14-36 (169)
351 1s6c_A KV4 potassium channel-i 21.0 2.9E+02 0.01 21.4 11.5 42 251-297 140-181 (183)
352 3bu8_A Telomeric repeat-bindin 21.0 3.4E+02 0.012 22.5 7.1 68 393-462 88-162 (235)
353 4gq2_M Nucleoporin NUP120; bet 20.8 7.4E+02 0.025 26.0 11.9 109 278-391 816-950 (950)
354 2jp7_A MRNA export factor MEX6 20.7 37 0.0013 21.3 1.1 22 191-212 33-54 (57)
355 1mzb_A Ferric uptake regulatio 20.6 2.2E+02 0.0076 21.3 5.9 59 333-392 9-68 (136)
356 4ets_A Ferric uptake regulatio 20.3 2.6E+02 0.009 21.8 6.5 71 324-395 14-87 (162)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-32 Score=281.21 Aligned_cols=455 Identities=7% Similarity=-0.072 Sum_probs=355.4
Q ss_pred cchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCC----CCCCHHH
Q 036198 9 PTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG----VPLTTDS 83 (499)
Q Consensus 9 p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~----~~~~~~~ 83 (499)
|+...|+.+++.+ +.++...+......+. ... |+...+..+...+.+.|++++|++.+. .+.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--------~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 152 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL--------DIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSAC 152 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH--------hhC-CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhH
Confidence 6778888888887 6666666654433322 112 233667889999999999999887653 3344554
Q ss_pred HHHHHHcc--CCChHHHHHHHHHhhcCC--------------CCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHH
Q 036198 84 VVGVLQRF--QFEEKIAFRFFMWAGHQD--------------NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR 147 (499)
Q Consensus 84 ~~~~l~~~--~~~~~~a~~~f~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 147 (499)
...+.... ....+.|.++|+.+.... +..++..+|+.++.++. +.|++++|.++|++|.+
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT----NLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence 44333222 355678888887432222 33446899999999999 99999999999999998
Q ss_pred cCCCcccHHHHHHHHHH----------------HHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCh
Q 036198 148 NNKVFVPVDVLLMILKQ----------------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211 (499)
Q Consensus 148 ~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 211 (499)
.+ +.....+..+... +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++.
T Consensus 229 ~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 305 (597)
T 2xpi_A 229 VD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS 305 (597)
T ss_dssp HC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH
T ss_pred hC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH
Confidence 77 3333333322211 111122222333445566666777777777777777776654 4566
Q ss_pred hhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 036198 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279 (499)
Q Consensus 212 ~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll 279 (499)
.+|+.+ |.++|+++.+.+.. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~ 380 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH----PEKAVTWLAVG 380 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC----cccHHHHHHHH
Confidence 666666 66777777766543 77889999999999999999999999999764 56789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 036198 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (499)
..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 45688999999999999999999999999988753 47889999999999999999
Q ss_pred HHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHH
Q 036198 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQD--VDTYCVMIDGLFDCSKVEEACF 433 (499)
Q Consensus 360 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~ 433 (499)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999864 347889999999999999999999999999775 66787 7899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 434 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
+++++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+..+.....+..+.
T Consensus 538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 999999886 348899999999999999999999999999999887766555544
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-32 Score=268.93 Aligned_cols=201 Identities=15% Similarity=0.235 Sum_probs=182.7
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC---------HHHH
Q 036198 222 LEEMIQMGHAPDN-FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR---------MEEC 291 (499)
Q Consensus 222 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a 291 (499)
.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.| ++||..+||++|.+|++.+. +++|
T Consensus 13 ~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G---v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 13 SRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG---VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp -----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT---CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3444455555443 468899999999999999999999999999 89999999999999987664 7899
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 292 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC
Q 036198 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 425 (499)
|+.||..||++||.+|++.|+.++|.+++++|++.|..|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999863
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.1e-32 Score=269.44 Aligned_cols=207 Identities=13% Similarity=0.159 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC-------
Q 036198 251 TEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK------- 322 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------- 322 (499)
..+..+.+++.+++ ..++ ...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 7 SPSENLSRKAKKKA---IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp --------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred chHHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 45666777787777 3333 446889999999999999999999999999999999999999999997764
Q ss_pred --HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 323 --VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 323 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
++.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 460 (499)
++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998764
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-29 Score=259.79 Aligned_cols=414 Identities=10% Similarity=-0.031 Sum_probs=329.8
Q ss_pred hHHHHHHHHHhccCCCchHHHHHhhCC----CCCCHHHHHHHHHcc--CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 036198 50 DVAKLYEAIIDNSNAYDNMEKALDSLG----VPLTTDSVVGVLQRF--QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMID 123 (499)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~al~~~~----~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~ 123 (499)
++...|..++..+.+.|++++|+..+. ..++...+..+...+ ....+.|..+|+.+.. ..++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHH
Confidence 456778889999999999888876542 233444333333222 3456678888887632 3568889999999
Q ss_pred HHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 036198 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203 (499)
Q Consensus 124 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (499)
+|. +.|++++|..+|+++..... .... ..-......+.+++..+|+.++.+|.+.|++++|.++|+++
T Consensus 159 ~~~----~~g~~~~A~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 159 CLV----KLYDWQGALNLLGETNPFRK-----DEKN---ANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHH----HTTCHHHHHHHHCSSCTTC------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH----HHhhHHHHHHHHhccCCccc-----cccc---cccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999 88999999999885322210 0000 00001122344567889999999999999999999999999
Q ss_pred hcCCCCChhhHHHH--------------------------------------------------HHHHHHHHHHcCCCCC
Q 036198 204 KNKVKPNANTYNIL--------------------------------------------------GMQTLEEMIQMGHAPD 233 (499)
Q Consensus 204 ~~~~~p~~~~~~~l--------------------------------------------------a~~~~~~m~~~g~~p~ 233 (499)
.+..+.+...+..+ |.++|+++.+. +++
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~ 304 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKS 304 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGC
T ss_pred HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cch
Confidence 86433333332211 66667766654 579
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|..+++++.+.. +.+..+++.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEID----PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 9999999999999999999999999999876 3477889999999999999999999999998664 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
..+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999987542 367899999999999999999999999999865 35788999999999999999
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLP--YRKFDSYLMQLSVIGDLGAIH 467 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~ 467 (499)
++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998763 347889999999999999999999999999876 66787 789999999999999999999
Q ss_pred HHHHHHHhhcChhHHHHHHHH
Q 036198 468 KLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 468 ~~~~~m~~~~~~~~~~~~~~~ 488 (499)
++++++.+..+....-++.+.
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHH
Confidence 999999998776555444443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.8e-22 Score=194.55 Aligned_cols=335 Identities=12% Similarity=-0.000 Sum_probs=265.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhc
Q 036198 92 QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171 (499)
Q Consensus 92 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (499)
....+.|..+++...... +.+..+|..+...+. +.|++++|...|+++.+..
T Consensus 46 ~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~---------------------- 97 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK----ERGQLQEAIEHYRHALRLK---------------------- 97 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC----------------------
T ss_pred cCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC----------------------
Confidence 445556666665543321 235566666666666 6666666666666665543
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
+.+..+|..+..++.+.|++++|.+.|+++.+ .. +.+...+..+...+...|+++
T Consensus 98 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------~~-p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 98 --PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ----------------------YN-PDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp --TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------HC-TTCTHHHHHHHHHHHTTSCHH
T ss_pred --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------hC-CCcHHHHHHHHHHHHHccCHH
Confidence 12344566666666666666666666666543 22 124567788889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++
T Consensus 153 ~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 153 EAKACYLKAIETQ----PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999875 4468899999999999999999999999999875 4467788899999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 411 (499)
+...... .+..++..+...+.+.|++++|...|+++.+.+. .+..+|..+..++.+.|++++|.+.++++.+. .+.+
T Consensus 228 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 304 (388)
T 1w3b_A 228 RALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTH 304 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-Cccc
Confidence 9887643 2578899999999999999999999999998642 34678999999999999999999999999876 3457
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
..++..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..|......+.+.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 8899999999999999999999999998764 346889999999999999999999999999998777665555443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=4.1e-21 Score=185.09 Aligned_cols=353 Identities=11% Similarity=-0.001 Sum_probs=285.6
Q ss_pred cchHHHHHHHHHhccCCCchHHHHHhhCC-----CCCCHHHHHHH--HHccCCChHHHHHHHHHhhcCCCCCCCHHHHHH
Q 036198 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLG-----VPLTTDSVVGV--LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120 (499)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~al~~~~-----~~~~~~~~~~~--l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ 120 (499)
.|.+...+..+...+...++++++...+. .+..+..+..+ +..-....+.|...|+.+.... +.+..+|..
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 106 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHH
Confidence 34445566667777777888888866441 23333333222 2223455678999999875431 225678999
Q ss_pred HHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 036198 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200 (499)
Q Consensus 121 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (499)
+..++. +.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 107 l~~~~~----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 107 LAAALV----AAGDMEGAVQAYVSALQYN------------------------PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHH----HHSCSSHHHHHHHHHHHHC------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHH----HcCCHHHHHHHHHHHHHhC------------------------CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999 9999999999999998775 234567888999999999999999999
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 036198 201 KRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280 (499)
Q Consensus 201 ~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~ 280 (499)
+++.+. .+-+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+..
T Consensus 159 ~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~ 211 (388)
T 1w3b_A 159 LKAIET-----------------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----PNFLDAYINLGN 211 (388)
T ss_dssp HHHHHH-----------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcHHHHHHHHH
Confidence 987652 12257889999999999999999999999999975 456788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (499)
.+...|++++|...|++..+.. +.+..++..+...+.+.|++++|.+.|+++.+.+.. +..+|..+...+.+.|++++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998764 346788999999999999999999999999987533 57789999999999999999
Q ss_pred HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|...++++.+
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998864 4577899999999999999999999999998752 34678899999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 036198 441 KGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 441 ~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
... -+...|..+...+...|+
T Consensus 368 ~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 ISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCT-TCHHHHHHHHHHHHHTCC
T ss_pred hCC-CCHHHHHhHHHHHHHccC
Confidence 642 356677777777666553
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.8e-20 Score=184.22 Aligned_cols=313 Identities=10% Similarity=-0.005 Sum_probs=264.8
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
+...+..+...+. +.|++++|..+|+++.... +.+..+|..+..++...|++
T Consensus 25 ~~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~------------------------p~~~~~~~~l~~~~~~~g~~ 76 (450)
T 2y4t_A 25 DVEKHLELGKKLL----AAGQLADALSQFHAAVDGD------------------------PDNYIAYYRRATVFLAMGKS 76 (450)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC------------------------CccHHHHHHHHHHHHHCCCH
Confidence 6778889999999 9999999999999998765 35788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH-
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA- 272 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~- 272 (499)
++|.+.|+++.+. .+.+...+..+..+|.+.|++++|.+.|+++.+.. +.+.
T Consensus 77 ~~A~~~~~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 129 (450)
T 2y4t_A 77 KAALPDLTKVIQL-----------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSENE 129 (450)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----CCHHH
T ss_pred HHHHHHHHHHHhc-----------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCChh
Confidence 9999999988652 12357788999999999999999999999999865 2334
Q ss_pred --HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 273 --KTYAIMI------------VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 273 --~~~~~ll------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
..+..+. ..+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.|+.+.+..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 5665554 44889999999999999999864 4578889999999999999999999999998763
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHH------------HHHHHhcCCchHHHHHHHHHhH
Q 036198 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNML------------ISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~ 405 (499)
+.+..+|..+...|...|++++|...|+++.+.. |+ ...+..+ ...|...|++++|.+.|+.+.+
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3468899999999999999999999999998753 44 3444444 7889999999999999999987
Q ss_pred CCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 406 RGCAQD-----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 406 ~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
. .|+ ...|..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|.+.++++.+..+..
T Consensus 286 ~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 286 T--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp H--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred c--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 5 344 4578889999999999999999999998775 3478899999999999999999999999999988776
Q ss_pred HHHHHHHH
Q 036198 481 IARRLALN 488 (499)
Q Consensus 481 ~~~~~~~~ 488 (499)
..-...+.
T Consensus 363 ~~~~~~l~ 370 (450)
T 2y4t_A 363 QQIREGLE 370 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=5.2e-19 Score=173.80 Aligned_cols=350 Identities=12% Similarity=0.018 Sum_probs=267.8
Q ss_pred CcchHHHHHHHHHhccCCCchHHHHHhhCCCCCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q 036198 47 SVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126 (499)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~ 126 (499)
..|.+...+..+...+.+.|++.+|+ .+|+.+... .+.+..+|..+...+.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~---------------------------~~~~~~l~~--~p~~~~~~~~l~~~~~ 71 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADAL---------------------------SQFHAAVDG--DPDNYIAYYRRATVFL 71 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHH---------------------------HHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHH---------------------------HHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 44555566666666666666665554 444443321 1236889999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 036198 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206 (499)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (499)
..|++++|...|+++.+.+ +.+..++..+...|.+.|++++|.+.|+++.+.
T Consensus 72 ----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 72 ----AMGKSKAALPDLTKVIQLK------------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp ----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred ----HCCCHHHHHHHHHHHHhcC------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999998876 246779999999999999999999999998774
Q ss_pred CCCCh---hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 036198 207 VKPNA---NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283 (499)
Q Consensus 207 ~~p~~---~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~ 283 (499)
.+.+. ..+..++.-. ....+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus 124 ~~~~~~~~~~~~~l~~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 124 NPSENEEKEAQSQLIKSD-----------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWDAELRELRAECFI 188 (450)
T ss_dssp CCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHH
Confidence 33333 3332220000 01123344566899999999999999999875 457889999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------HHH
Q 036198 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF------------LKV 351 (499)
Q Consensus 284 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------------i~~ 351 (499)
..|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+.+.+.... +...+..+ ...
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998763 457889999999999999999999999999875322 34445444 788
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcC-----hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWPS-----VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 999999999999999998853 44 4578889999999999999999999987752 336889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH------------HHHhcC-----CHHHHHHHHHHHH
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLM------------QLSVIG-----DLGAIHKLSDHMR 474 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~------------~~~~~g-----~~~~a~~~~~~m~ 474 (499)
++++|...++++.+.... +...+..+.. .|...| +.+++.+.++++.
T Consensus 344 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA 407 (450)
T ss_dssp CHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH
Confidence 999999999999986422 4556655553 244445 5667788888643
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.7e-19 Score=175.94 Aligned_cols=352 Identities=10% Similarity=0.015 Sum_probs=272.5
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
...+.|...|+.+.... |+...|..+..++. +.|++++|...++++.+.+
T Consensus 20 g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~----------------------- 69 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK---EDPVFYSNLSACYV----SVGDLKKVVEMSTKALELK----------------------- 69 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred ccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHH----HHhhHHHHHHHHHHHhccC-----------------------
Confidence 34566777777765433 68899999999999 9999999999999998776
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhH--------------------------------------
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY-------------------------------------- 214 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~-------------------------------------- 214 (499)
+.+..+|..+..++.+.|++++|...|+++....+++....
T Consensus 70 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 70 -PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 24567889999999999999999999988765332221111
Q ss_pred -----------------------------------------HHH---------------HHHHHHHHHH-----cCC---
Q 036198 215 -----------------------------------------NIL---------------GMQTLEEMIQ-----MGH--- 230 (499)
Q Consensus 215 -----------------------------------------~~l---------------a~~~~~~m~~-----~g~--- 230 (499)
... |...++++.+ ...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 000 5666666665 211
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 036198 231 -----APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305 (499)
Q Consensus 231 -----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 305 (499)
+.+..++..+...+...|++++|...|+++.+.. |+..++..+...+...|++++|...++.+.+.. +.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 302 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-----PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SN 302 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TT
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cC
Confidence 2235577788888888999999999999888865 337788888888889999999999998888764 44
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
+...+..+...+...|++++|...++...+.... +...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 380 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAE 380 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHH
Confidence 6677888888899999999999999988876433 56788888888889999999999999988753 235678888889
Q ss_pred HHHhcCCchHHHHHHHHHhHCCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 386 MYFELGEPDGAFETWHEMDKRGC-AQD----VDTYCVMIDGLFD---CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
.|...|++++|...++.+.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+..+|
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 99999999999999988865421 111 3478888888888 999999999999988765 33677888889999
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.+.|++++|.+.+++..+..+....-.
T Consensus 460 ~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 999999999999999998877654433
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.3e-17 Score=158.09 Aligned_cols=317 Identities=9% Similarity=-0.025 Sum_probs=260.0
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
|+..+..+...+. ..|++++|...|+++.... +.+..++..+...+...|++
T Consensus 2 ~~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~------------------------p~~~~~~~~~a~~~~~~~~~ 53 (359)
T 3ieg_A 2 DVEKHLELGKKLL----AAGQLADALSQFHAAVDGD------------------------PDNYIAYYRRATVFLAMGKS 53 (359)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC------------------------cccHHHHHHHHHHHHHccCH
Confidence 4566777888888 9999999999999998875 34677999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCC---C
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---P 270 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---p 270 (499)
++|...|+++.+. .+-+...+..+..++...|++++|...|++..+.. + .
T Consensus 54 ~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~ 106 (359)
T 3ieg_A 54 KAALPDLTKVIAL-----------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSEQE 106 (359)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC----CCHHH
T ss_pred HHHHHHHHHHHHh-----------------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CcccC
Confidence 9999999987641 12266788999999999999999999999999864 2 2
Q ss_pred CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 271 TAKTYAIM------------IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 271 ~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
+...+..+ ...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+..
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 44555544 578899999999999999999874 4577889999999999999999999999998875
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHH------------HHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN------------MLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+.+..++..+...+...|++++|...+++..+... .+...+. .+...+.+.|++++|.+.++...+.
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34778999999999999999999999999987542 2233332 2366788999999999999998875
Q ss_pred CCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 407 GCAQDV----DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 407 ~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
... +. ..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.+++..+..|....
T Consensus 264 ~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 264 EPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp CCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 322 22 235557788999999999999999999875 347889999999999999999999999999999887666
Q ss_pred HHHHHHHh
Q 036198 483 RRLALNQK 490 (499)
Q Consensus 483 ~~~~~~~~ 490 (499)
-...+...
T Consensus 342 ~~~~l~~~ 349 (359)
T 3ieg_A 342 IREGLEKA 349 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9.6e-18 Score=167.54 Aligned_cols=339 Identities=10% Similarity=0.006 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChH
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 194 (499)
...+......+. +.|++++|...|+++.... |+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~-------------------------p~~~~~~~la~~~~~~g~~~ 56 (514)
T 2gw1_A 6 ALALKDKGNQFF----RNKKYDDAIKYYNWALELK-------------------------EDPVFYSNLSACYVSVGDLK 56 (514)
T ss_dssp HHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHC-------------------------CCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHhcC-------------------------ccHHHHHhHHHHHHHHhhHH
Confidence 345666677777 8999999999999999876 78889999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCC------------------------------
Q 036198 195 YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP------------------------------ 232 (499)
Q Consensus 195 ~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p------------------------------ 232 (499)
+|.+.|+++.+..+.+...|..+ |...|+.+...+...
T Consensus 57 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (514)
T 2gw1_A 57 KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136 (514)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987666666666666 788888877654311
Q ss_pred ------------------------------------------------CHHHHHHHHHHHHh---cCCHhHHHHHHHHHH
Q 036198 233 ------------------------------------------------DNFTYNTAIDTFCK---ARMVTEAADLFEFMR 261 (499)
Q Consensus 233 ------------------------------------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~ 261 (499)
+...+......+.. .|++++|..+|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 13333333343443 899999999999998
Q ss_pred H-----cCCCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 262 T-----KGSTIS-----SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 262 ~-----~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+ ...... +.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|.+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8 310000 1235678889999999999999999999999875 348888999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 411 (499)
.+.+... .+..++..+...+...|++++|...++++.+... .+...+..+...|...|++++|...++.+.+.. +.+
T Consensus 295 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 9988743 3677899999999999999999999999998653 356788899999999999999999999988752 235
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcChhHHH
Q 036198 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LP----YRKFDSYLMQLSV---IGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
...+..+...+...|++++|...++++.+.... ++ ...+..+..++.. .|++++|.+.++++.+..+.....
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 678889999999999999999999998865322 12 3488899999999 999999999999999987765544
Q ss_pred HHHH
Q 036198 484 RLAL 487 (499)
Q Consensus 484 ~~~~ 487 (499)
.+.+
T Consensus 452 ~~~l 455 (514)
T 2gw1_A 452 KIGL 455 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=5.8e-17 Score=162.87 Aligned_cols=347 Identities=11% Similarity=0.048 Sum_probs=264.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|...|+.+.... +.++..|..+...+. +.|++++|.+.++++.+.+ +.
T Consensus 42 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~------------------------p~ 91 (537)
T 3fp2_A 42 NEAIKYYQYAIELD--PNEPVFYSNISACYI----STGDLEKVIEFTTKALEIK------------------------PD 91 (537)
T ss_dssp C-CHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC------------------------TT
T ss_pred HHHHHHHHHHHhhC--CCCcHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC------------------------Cc
Confidence 34555555543322 236788888888888 8999999999999988776 24
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC-------------------------------------CCChhh-----
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKV-------------------------------------KPNANT----- 213 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------------------------~p~~~~----- 213 (499)
+..++..+...+...|++++|.+.|+.+.... .|+...
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 56778888888888888888888886442110 011000
Q ss_pred -------------------------HHHH--------------------HHHHHHHHHHcCCCCC-------HHHHHHHH
Q 036198 214 -------------------------YNIL--------------------GMQTLEEMIQMGHAPD-------NFTYNTAI 241 (499)
Q Consensus 214 -------------------------~~~l--------------------a~~~~~~m~~~g~~p~-------~~~~~~li 241 (499)
...+ |..+++.+.+.... + ..++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 0000 55566666654332 2 23567777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
..+...|++++|.+.|++..+.. |+..++..+...+...|++++|...+++..+.. +.+..++..+...+...|
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH-----PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 88899999999999999999865 558889999999999999999999999998874 456788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 401 (499)
++++|.+.++...+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 325 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999876433 56788899999999999999999999998864 2456788999999999999999999999
Q ss_pred HHhHCC-----CCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036198 402 EMDKRG-----CAQDVDTYCVMIDGLFDC----------SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466 (499)
Q Consensus 402 ~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 466 (499)
.+.+.. .......+......+... |++++|...++++.+... .+...+..+..+|.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHH
Confidence 986532 112223344555667777 999999999999998753 4678899999999999999999
Q ss_pred HHHHHHHHhhcChhHH
Q 036198 467 HKLSDHMRKFYNPVIA 482 (499)
Q Consensus 467 ~~~~~~m~~~~~~~~~ 482 (499)
.+.+++..+..+....
T Consensus 482 ~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 482 IELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999988765443
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=6.5e-17 Score=151.56 Aligned_cols=294 Identities=9% Similarity=-0.055 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCC
Q 036198 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG 191 (499)
Q Consensus 112 ~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g 191 (499)
+.+...+..+...+. ..|++++|..+++++.+.. +.+...+..++..+...|
T Consensus 19 ~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~~l~~~------------------------p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHY----YNCDFKMCYKLTSVVMEKD------------------------PFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcC------------------------CCChhhHHHHHHHHHHhh
Confidence 345666777778888 8899999999999988776 235567777888888999
Q ss_pred ChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCCC
Q 036198 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR-MVTEAADLFEFMRTKGSTISSP 270 (499)
Q Consensus 192 ~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~p 270 (499)
++++|..+++++.+. .+.+...+..+...+...| ++++|.+.|++..+.. +.
T Consensus 71 ~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----~~ 123 (330)
T 3hym_B 71 KANELFYLSHKLVDL-----------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE----KT 123 (330)
T ss_dssp CHHHHHHHHHHHHHH-----------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC----TT
T ss_pred hHHHHHHHHHHHHHh-----------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----Cc
Confidence 999999998887642 1225677888889999999 8999999999998875 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 201 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGV 201 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 57788899999999999999999999998764 33456677788899999999999999999887753 36788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC--------CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVG--------CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
.+...|++++|...+++..+.. ......++..+..+|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 280 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHH
Confidence 9999999999999999887631 12335688888999999999999999999887753 23567888888899
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLG 464 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~ 464 (499)
...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 281 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 281 SLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999887665 23667777777777 4566654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.1e-17 Score=151.74 Aligned_cols=286 Identities=8% Similarity=-0.073 Sum_probs=240.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 252 (499)
.+.+...+..+...+...|++++|.++|+++... .+.+...+..++.++...|++++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------------------~p~~~~~~~~~~~~~~~~~~~~~ 74 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-----------------------DPFHASCLPVHIGTLVELNKANE 74 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------CTTCTTTHHHHHHHHHHHTCHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------CCCChhhHHHHHHHHHHhhhHHH
Confidence 3456778888999999999999999999988652 12245566778888999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
|..+++++.+.. +.+...|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++
T Consensus 75 A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 75 LFYLSHKLVDLY----PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp HHHHHHHHHHHC----TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC----cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999875 456788999999999999 9999999999998764 4457788999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC----
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG---- 407 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---- 407 (499)
...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+..
T Consensus 150 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 150 TAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 99876433 45677789999999999999999999998864 3457889999999999999999999999887631
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHH
Q 036198 408 ----CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 408 ----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
...+..++..+...+...|++++|...+++..+... .+...+..+..++.+.|++++|.+.+++..+..+.....
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 133457889999999999999999999999998763 367889999999999999999999999999988776655
Q ss_pred HHHHHH
Q 036198 484 RLALNQ 489 (499)
Q Consensus 484 ~~~~~~ 489 (499)
...+..
T Consensus 307 ~~~l~~ 312 (330)
T 3hym_B 307 VTMLGH 312 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=182.28 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMI---NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
-..|||++|++|++.|++++|.++|.+|. +.|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34577777777777777777777776655 346777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHCCCCcChhhHHHHHHHHHh
Q 036198 348 FLKVLCDNKNG-DEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389 (499)
Q Consensus 348 li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 389 (499)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777777763 5677777777777777777777777765544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3e-15 Score=141.83 Aligned_cols=315 Identities=12% Similarity=-0.004 Sum_probs=243.6
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
...+.|...|+.+.... +.+..+|..+...+. ..|++++|...+++..+..
T Consensus 17 g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~----------------------- 67 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGD--PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIALK----------------------- 67 (359)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred CCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC-----------------------
Confidence 34456677776654322 236788999999999 9999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC---CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 249 (499)
+.+...+..+...+...|++++|.+.|++..+..+ .+...+..++.- .....+..+...+...|+
T Consensus 68 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 68 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA-----------DEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTC
T ss_pred -CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH-----------HHHHHHHHHHHHHHHccC
Confidence 23667899999999999999999999999876432 222222211000 001123344688999999
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
+++|.+.|+++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.
T Consensus 136 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 136 YTAAITFLDKILEVC----VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999875 4578899999999999999999999999999874 55788899999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh-----hhHHHHHHHHHhcCC
Q 036198 330 LEEMGNKGYPPDIVTYN------------CFLKVLCDNKNGDEALRLYGRMIEVGCWPSV-----QTYNMLISMYFELGE 392 (499)
Q Consensus 330 ~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~~~ 392 (499)
++...+.... +...+. .+...+.+.|++++|...++++.+.. |+. ..+..+..++...|+
T Consensus 211 ~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC
Confidence 9998876422 333333 23666889999999999999998854 332 235567789999999
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
+++|.+.++...+.. +.+..++..+...+...|++++|...++++.+... -+...+..+..+..
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 999999999998752 33788999999999999999999999999998752 24555555555543
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=179.56 Aligned_cols=154 Identities=11% Similarity=0.028 Sum_probs=126.7
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN---KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
...-..||++||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567899999999999999999999988764 48899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc-hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHH
Q 036198 380 YNMLISMYFELGEP-DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP------YRKFDS 452 (499)
Q Consensus 380 ~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ 452 (499)
||+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+ +.+++.++++ .-++.|+ ..+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 99999999999985 7889999999999999999999999876655 3455555555 4455554 445555
Q ss_pred HHHHHHhcC
Q 036198 453 YLMQLSVIG 461 (499)
Q Consensus 453 ll~~~~~~g 461 (499)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 556666554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=1e-16 Score=152.90 Aligned_cols=271 Identities=9% Similarity=-0.041 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...+..+...+.+.|++++|...|+++.+. .+.+...+..+..++.+.|++++|.+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-----------------------DPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4567888999999999999999999988652 22367788999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH---------------HHHHHHhc
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE---------------VLEGMCLA 320 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~~~ 320 (499)
.|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+.. .+..+...
T Consensus 120 ~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 120 ALRRCLELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 999999875 45788999999999999999999999999998642 22222221 24444589
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 399 (499)
|++++|.+.++++.+..... +..++..+...+.+.|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998764321 47889999999999999999999999998764 24577899999999999999999999
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL----------PYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
++++.+.. +.+...+..+...|...|++++|...++++.+..... ...+|..+..+|...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99988753 3467889999999999999999999999988653221 268899999999999999999998
Q ss_pred HHHHHhh
Q 036198 470 SDHMRKF 476 (499)
Q Consensus 470 ~~~m~~~ 476 (499)
+.+-.+.
T Consensus 353 ~~~~l~~ 359 (368)
T 1fch_A 353 DARDLST 359 (368)
T ss_dssp HTTCHHH
T ss_pred HHHHHHH
Confidence 8754443
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=1.3e-15 Score=153.14 Aligned_cols=336 Identities=12% Similarity=0.063 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChH
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 194 (499)
...|..+...+. +.|++++|...|+++.... +.+..+|..+..+|.+.|+++
T Consensus 25 a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~ 76 (537)
T 3fp2_A 25 AVQLKNRGNHFF----TAKNFNEAIKYYQYAIELD------------------------PNEPVFYSNISACYISTGDLE 76 (537)
T ss_dssp HHHHHHHHHHHH----HTTCCC-CHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHhhC------------------------CCCcHHHHHHHHHHHHcCCHH
Confidence 455777777888 9999999999999998876 357789999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcC---------------------------------
Q 036198 195 YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG--------------------------------- 229 (499)
Q Consensus 195 ~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g--------------------------------- 229 (499)
+|.+.|+++.+..+.+...+..+ |...|+.+....
T Consensus 77 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~ 156 (537)
T 3fp2_A 77 KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999987656666666555 555554221000
Q ss_pred ---CCCCHHH------------------------------HHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCCC
Q 036198 230 ---HAPDNFT------------------------------YNTAIDTFCK--------ARMVTEAADLFEFMRTKGSTIS 268 (499)
Q Consensus 230 ---~~p~~~~------------------------------~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~ 268 (499)
..|+... ...+...+.. .|++++|..+|+++.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---- 232 (537)
T 3fp2_A 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---- 232 (537)
T ss_dssp --CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC----
Confidence 0111111 1111111111 147889999999998765
Q ss_pred CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 036198 269 SPT-------AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341 (499)
Q Consensus 269 ~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 341 (499)
+.+ ..++..+...+...|++++|...|+...+. .|+...+..+...+...|++++|.+.++...+... .+
T Consensus 233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 309 (537)
T 3fp2_A 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EY 309 (537)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TC
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CC
Confidence 222 335677778888999999999999999987 46688888899999999999999999999887643 36
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
..+|..+...+...|++++|...++++.+... .+...+..+..+|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 78899999999999999999999999988642 346788899999999999999999999988763 3356788889999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 422 LFDCSKVEEACFLLEEVVNKGL-----KLPYRKFDSYLMQLSVI----------GDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
+...|++++|...++++.+... ......+.....++... |++++|.+.+++..+..+....-.+.
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999876431 11222344555677777 99999999999999987765544443
Q ss_pred H
Q 036198 487 L 487 (499)
Q Consensus 487 ~ 487 (499)
+
T Consensus 468 l 468 (537)
T 3fp2_A 468 L 468 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=2.2e-16 Score=150.56 Aligned_cols=266 Identities=9% Similarity=-0.028 Sum_probs=217.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...+..+...+.+.|++++|.+.|+++... .+.+..+|..+..++.+.|++++|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-----------------------DPGDAEAWQFLGITQAENENEQAAIV 120 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556889999999999999999999988652 12367889999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-----------HHhHHHHHHHHHhcCCHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-----------VSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~~~~g~~~ 324 (499)
.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. |+ ...+..+...+...|+++
T Consensus 121 ~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 121 ALQRCLELQ----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHH
T ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 999999875 4568899999999999999999999999998763 32 223334578899999999
Q ss_pred HHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 036198 325 EAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 403 (499)
+|.+.++++.+.... ++..++..+...+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|++.
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886432 157899999999999999999999999998864 246789999999999999999999999999
Q ss_pred hHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-----------LPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.+.. +.+..++..+..+|...|++++|...++++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8752 235788999999999999999999999998864311 1367899999999999999988776654
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.4e-16 Score=146.43 Aligned_cols=272 Identities=12% Similarity=-0.023 Sum_probs=223.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+..++...|++++|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~ 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA-----------------------APEREEAWRSLGLTQAENEKDGLAII 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456778888999999999999999987642 12367788899999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH--------------HH-HHHhc
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV--------------LE-GMCLA 320 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~ 320 (499)
.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+ .. .+...
T Consensus 77 ~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 77 ALNHARMLD----PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSH
T ss_pred HHHHHHhcC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc
Confidence 999999875 4578899999999999999999999999999763 2233333333 22 37788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+
T Consensus 152 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999876433 67889999999999999999999999998764 245778999999999999999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL-----------PYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
+++.+.. +.+..++..+...|...|++++|...++++.+..... +...+..+..++.+.|+.++|.++
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9987753 3367889999999999999999999999998764321 477889999999999999999999
Q ss_pred HHHHHhhcC
Q 036198 470 SDHMRKFYN 478 (499)
Q Consensus 470 ~~~m~~~~~ 478 (499)
+++..+.++
T Consensus 309 ~~~~l~~~~ 317 (327)
T 3cv0_A 309 YAQNVEPFA 317 (327)
T ss_dssp TTCCSHHHH
T ss_pred HHHHHHhcc
Confidence 886655433
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=4.8e-16 Score=148.16 Aligned_cols=271 Identities=10% Similarity=-0.035 Sum_probs=215.4
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
+...|..+...+. +.|++++|..+|+++.... +.+..+|..+...+.+.|++
T Consensus 64 ~~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 64 DWPGAFEEGLKRL----KEGDLPVTILFMEAAILQD------------------------PGDAEAWQFLGITQAENENE 115 (365)
T ss_dssp TCTTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC------------------------cCCHHHHHHHHHHHHHCCCH
Confidence 4566888888888 9999999999999998876 34678999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCC----
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---- 269 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---- 269 (499)
++|.+.|++..+. .+.+..++..+..+|...|++++|++.|+++.+.......
T Consensus 116 ~~A~~~~~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (365)
T 4eqf_A 116 QAAIVALQRCLEL-----------------------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172 (365)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---
T ss_pred HHHHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhh
Confidence 9999999987651 1235788999999999999999999999999886411000
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 036198 270 --PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346 (499)
Q Consensus 270 --p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (499)
.....+..+...+...|++++|...|+++.+.... .+..++..+...|...|++++|.+.+++..+... .+..+|.
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 251 (365)
T 4eqf_A 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWN 251 (365)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 01223345578889999999999999999987421 1688999999999999999999999999887643 3688999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCC---C--------CCHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC---A--------QDVDTY 415 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~--------p~~~~~ 415 (499)
.+..+|.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|...|++..+... . .+...|
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 99999999999999999999998864 23478899999999999999999999999876310 1 135788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 036198 416 CVMIDGLFDCSKVEEACFLLEE 437 (499)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~ 437 (499)
..+..++...|+.+.+..+.++
T Consensus 331 ~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 331 AALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999988877654
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=3e-15 Score=142.60 Aligned_cols=267 Identities=10% Similarity=-0.065 Sum_probs=210.6
Q ss_pred HHhCCChHHHHH-HHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 187 LCKCGLVDYAET-ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 187 ~~~~g~~~~A~~-~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
+...|++++|.+ .|++..... |+ ....+...+..+...+.+.|++++|...|+++.+..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~-~~------------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE-EE------------------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD- 94 (368)
T ss_dssp -----------CHHHHCCCCCC-SS------------------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-
T ss_pred hHHHHHHHHHHhhhhhHHHhcC-CC------------------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 334578888888 777654321 11 111245667889999999999999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 036198 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345 (499)
Q Consensus 266 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 345 (499)
+.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.... +...+
T Consensus 95 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 169 (368)
T 1fch_A 95 ---PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLV 169 (368)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGC
T ss_pred ---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHH
Confidence 4578899999999999999999999999999875 457888999999999999999999999999887533 22222
Q ss_pred HH---------------HHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCC
Q 036198 346 NC---------------FLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409 (499)
Q Consensus 346 ~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 409 (499)
.. .+..+...|++++|...++++.+.... ++..++..+...|...|++++|...++++.+.. +
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 21 234444899999999999999886422 147889999999999999999999999988752 3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+..++..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.++++.+..+..
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 367889999999999999999999999998875 3468899999999999999999999999999876654
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=8e-15 Score=134.63 Aligned_cols=258 Identities=11% Similarity=0.066 Sum_probs=209.7
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN--FTYNTAIDTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 261 (499)
++-....|++..|+..++.... ..|+. .....+.++|...|+++.|+..++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~------------------------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-- 59 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP------------------------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-- 59 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC------------------------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------------------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc--
Confidence 3445668999999998877644 22332 3556678999999999999987654
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036198 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 262 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 340 (499)
. .+|+..++..+...+...++.++|.+.++++...+..| +...+..+...+...|++++|.+.++. +.
T Consensus 60 -~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~ 128 (291)
T 3mkr_A 60 -S----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD 128 (291)
T ss_dssp -T----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC
T ss_pred -c----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC
Confidence 1 36788899999999999999999999999999876545 455666677899999999999999987 45
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH---HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY---NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 417 (499)
+...+..+...+.+.|++++|.+.++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~ 205 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNG 205 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHH
Confidence 78899999999999999999999999999864 554321 22334444568999999999999886 4568889999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhcChhHH
Q 036198 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA-IHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~~~~~~~ 482 (499)
+..++.+.|++++|...+++..+... -+..++..++..+...|+.++ +.++++++.+..|..+.
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999998763 378899999999999999875 67899999988776543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.2e-15 Score=140.89 Aligned_cols=267 Identities=10% Similarity=-0.045 Sum_probs=218.4
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
+...+..+...+. ..|++++|..+|+++.+.. +.+..++..+...+...|++
T Consensus 20 ~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~ 71 (327)
T 3cv0_A 20 YHENPMEEGLSML----KLANLAEAALAFEAVCQAA------------------------PEREEAWRSLGLTQAENEKD 71 (327)
T ss_dssp GSSCHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHH----HhccHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 3455667777788 8999999999999998865 24677899999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~ 273 (499)
++|.+.|+++.+. .+.+..++..+...+...|++++|.+.++++.+... .+..
T Consensus 72 ~~A~~~~~~a~~~-----------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~ 124 (327)
T 3cv0_A 72 GLAIIALNHARML-----------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP----QYEQ 124 (327)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST----TTTT
T ss_pred HHHHHHHHHHHhc-----------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccHH
Confidence 9999999987652 123677889999999999999999999999998752 2222
Q ss_pred HHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 274 TYAIM--------------IV-ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 274 ~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
.+..+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 125 LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203 (327)
T ss_dssp C--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 33332 22 3677889999999999999874 44788899999999999999999999999887643
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC--------
Q 036198 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-------- 410 (499)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------- 410 (499)
.+..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.+++..+.....
T Consensus 204 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 204 -DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 367889999999999999999999999998754 2457789999999999999999999999987652221
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 411 ---DVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 411 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
+...|..+..++...|+.++|..++++.
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4678889999999999999999988654
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=3.7e-12 Score=126.31 Aligned_cols=326 Identities=12% Similarity=0.046 Sum_probs=239.9
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhh----hhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK----AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~ 168 (499)
.+.+.|+..|+..... + +...+..+-..+. . .+++++|...|++..+.+
T Consensus 57 ~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~----~g~g~~~~~~~A~~~~~~a~~~~------------------- 109 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYM----NGEGVPQDYAQAVIWYKKAALKG------------------- 109 (490)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH----HTSSSCCCHHHHHHHHHHHHHTT-------------------
T ss_pred cCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH----cCCCCCCCHHHHHHHHHHHHHCC-------------------
Confidence 3445566666655433 2 4555666666665 4 566777777776665544
Q ss_pred hhcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcCCCCChhhHHHH----------------HHHHHHHHHHc
Q 036198 169 IKVKTQPEINALNLLLDALCK----CGLVDYAETICKRVKNKVKPNANTYNIL----------------GMQTLEEMIQM 228 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~l----------------a~~~~~~m~~~ 228 (499)
+...+..|...|.. .+++++|.+.|++..+.- +...+..+ |.+.|+...+.
T Consensus 110 -------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 110 -------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 33344445555544 455555555555544321 22222222 44445555554
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 036198 229 GHAPDNFTYNTAIDTFCK----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMIN 300 (499)
Q Consensus 229 g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~ 300 (499)
| +...+..+...|.. .++.++|.++|++..+.+ +..++..+...|.. .+++++|..+|++..+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3 67788888888887 899999999999998876 56778888888886 7899999999999887
Q ss_pred cCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHC
Q 036198 301 SGCLPDVSTYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN-----KNGDEALRLYGRMIEV 371 (499)
Q Consensus 301 ~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~ 371 (499)
.| +...+..+...|.. .++.++|.+.|+...+.| +...+..+...|... +++++|...|++..+.
T Consensus 252 ~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 252 QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 65 45566677777777 899999999999988775 556777788888877 8999999999999887
Q ss_pred CCCcChhhHHHHHHHHHhcC---CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 036198 372 GCWPSVQTYNMLISMYFELG---EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLK 444 (499)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 444 (499)
| +...+..+...|...| +.++|.+.|++..+.| +...+..+-..|.. .+++++|..++++..+.|
T Consensus 326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 5 4466777777777766 7889999999998864 67788888888888 899999999999999876
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcC
Q 036198 445 LPYRKFDSYLMQLSV----IGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 445 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~ 478 (499)
+...+..+...|.. .++.++|.+.+++..+..+
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 57788888888888 8999999999999998873
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=9.4e-14 Score=127.47 Aligned_cols=248 Identities=10% Similarity=0.059 Sum_probs=199.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE--INALNLLLDALCKCGLVDYAETICKRVKNKVK 208 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (499)
..|++..|+..++...... |+ ......+.++|...|+++.|...++..
T Consensus 11 ~~g~y~~ai~~~~~~~~~~-------------------------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----- 60 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSS-------------------------PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----- 60 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCS-------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----
T ss_pred HHHHHHHHHHHHHhcccCC-------------------------chhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----
Confidence 6799999999887754432 33 235566788999999999998755331
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCC
Q 036198 209 PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-TAKTYAIMIVALVQNDR 287 (499)
Q Consensus 209 p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 287 (499)
-+|+..++..+...+...|+.++|++.++++...+ ..| +...+..+...+...|+
T Consensus 61 ---------------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~---~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 61 ---------------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS---VDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC---CCCSCHHHHHHHHHHHHHTTC
T ss_pred ---------------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---cCCCCHHHHHHHHHHHHHCCC
Confidence 24577788899999999999999999999998875 234 56677777889999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHHHcCCHHHHHHH
Q 036198 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY---NCFLKVLCDNKNGDEALRL 364 (499)
Q Consensus 288 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~ 364 (499)
+++|++.+++ +.+...+..+...+.+.|++++|.+.++.+.+.. |+.... ...+..+...|++++|..+
T Consensus 117 ~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 117 PDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp HHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999987 4678899999999999999999999999998874 443211 1233444456899999999
Q ss_pred HHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCC
Q 036198 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE-ACFLLEEVVNKG 442 (499)
Q Consensus 365 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~ 442 (499)
|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 189 ~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 189 FQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999863 4678899999999999999999999999988763 3377789999999999999876 678999998775
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=1.5e-15 Score=142.99 Aligned_cols=289 Identities=10% Similarity=0.034 Sum_probs=126.4
Q ss_pred HHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHH
Q 036198 83 SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL 162 (499)
Q Consensus 83 ~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 162 (499)
.+..+|..++. -+.|.++++.+ +++.+|..+..++. +.|++++|.+.|.+.
T Consensus 8 a~~~ll~~~~~-ld~A~~fae~~-------~~~~vWs~La~A~l----~~g~~~eAIdsfika----------------- 58 (449)
T 1b89_A 8 AVQVLIEHIGN-LDRAYEFAERC-------NEPAVWSQLAKAQL----QKGMVKEAIDSYIKA----------------- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccC-HHHHHHHHHhC-------CChHHHHHHHHHHH----HcCCHHHHHHHHHcC-----------------
Confidence 34444444332 34577888765 24468999999999 999999999998542
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036198 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242 (499)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~ 242 (499)
+|...|..+++.+...|++++|...++...+. .+++.+.+.++.
T Consensus 59 ------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~------------------------~~~~~i~~~Li~ 102 (449)
T 1b89_A 59 ------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK------------------------ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------------CccchhHHHHHH
Confidence 46668999999999999999999976655431 245677888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 322 (499)
+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|+
T Consensus 103 ~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC
T ss_pred HHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc
Confidence 9999999999888873 366779999999999999999999999876 478889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
+++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.+++|..+++.
T Consensus 164 yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 164 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988 27889999999999999999995554432 22333355688889999999999999998
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 036198 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN-KGLKL------PYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 403 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p------~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
..... +-....|+.+--+|++- ++++.++.++...+ -+++| +...|..+.-.|...|+++.|..
T Consensus 233 aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 87654 45677788887777764 23433333332221 12222 34567777788888888887766
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=2.1e-12 Score=129.42 Aligned_cols=430 Identities=13% Similarity=0.086 Sum_probs=280.4
Q ss_pred Ccc-hhhHHHHHHHhccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhC----CCCCCHH
Q 036198 8 SPT-EAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL----GVPLTTD 82 (499)
Q Consensus 8 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~----~~~~~~~ 82 (499)
.|+ ...|..+++....+++..+ +..++......|.+...|...+..+.+.++.++|...+ ...++.+
T Consensus 9 ~P~~~~~w~~l~~~~~~~~~~~a--------~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 9 NPYDLDAWSILIREAQNQPIDKA--------RKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp CTTCHHHHHHHHHHHHSSCHHHH--------HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred CCCCHHHHHHHHHHHHhCCHHHH--------HHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 353 5567777764443443333 34555555566777788888888888888888886644 3334666
Q ss_pred HHHHHHH----ccCCC---hHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHhcch-----hhhhhHHHHHHHHHHHHHcC
Q 036198 83 SVVGVLQ----RFQFE---EKIAFRFFMWAGHQDNYAH-EPLAYNLMIDILSSTK-----YKAKQFRLVCSMLDYMKRNN 149 (499)
Q Consensus 83 ~~~~~l~----~~~~~---~~~a~~~f~~~~~~~~~~~-~~~~~~~li~~~~~~~-----~~~~~~~~a~~~~~~m~~~~ 149 (499)
++...+. ..+.. .+.+..+|+......|..| +...|...+....+.. ...|+++.|..+|++.....
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 5544432 12211 2234557777655445443 5678888877665100 02789999999999988731
Q ss_pred CCcccH-HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHc
Q 036198 150 KVFVPV-DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228 (499)
Q Consensus 150 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~ 228 (499)
.... ..+.. ...+.+.. +..+...++. .+.++++.|..++..+.. +....+.
T Consensus 161 --~~~~~~~~~~-~~~~e~~~------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~----------------~~~~l~~ 213 (530)
T 2ooe_A 161 --MINIEQLWRD-YNKYEEGI------NIHLAKKMIE--DRSRDYMNARRVAKEYET----------------VMKGLDR 213 (530)
T ss_dssp --CTTHHHHHHH-HHHHHHHH------CHHHHHHHHH--TTHHHHHHHHHHHHHHHH----------------HHHHCCS
T ss_pred --hhhHHHHHHH-HHHHHHhh------chhHHHHHHH--HhhHHHHHHHHHHHHHHH----------------HHHHhcc
Confidence 1111 11111 11111110 1111122221 134567777777766321 0000011
Q ss_pred ---CCCCC--------HHHHHHHHHHHHhc----CCH----hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-----
Q 036198 229 ---GHAPD--------NFTYNTAIDTFCKA----RMV----TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----- 284 (499)
Q Consensus 229 ---g~~p~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----- 284 (499)
.++|+ ...|...+...... ++. ++|..+|++..... +-+...|......+.+
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~----p~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhchhh
Confidence 01222 23444444333221 232 47788999988864 4578889888888876
Q ss_pred --cCCHH-------HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHH
Q 036198 285 --NDRME-------ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD--IVTYNCFLKVLC 353 (499)
Q Consensus 285 --~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~ 353 (499)
.|+++ +|..+|++..+.-.+.+...+..+...+.+.|++++|.++|+...+. .|+ ...|...+..+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 68876 89999999986323446888999999999999999999999999986 343 258888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
+.|++++|.++|++..+... .+...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|.
T Consensus 368 ~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHH
Confidence 99999999999999987531 223333322222 336899999999999887752 236788999999999999999999
Q ss_pred HHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 433 FLLEEVVNKGL-KLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 433 ~~~~~m~~~~~-~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+|++....+. .|+ ...|..++......|+.+.+..+.+++.+.++..
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 99999998753 222 4478888888888999999999999999988753
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=2.3e-11 Score=120.55 Aligned_cols=321 Identities=12% Similarity=0.010 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh----
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK---- 189 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~---- 189 (499)
++..+..+-..+..-....+++++|...|++..+.+ +...+..|...|..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------------------------~~~a~~~Lg~~y~~g~g~ 91 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------------------------YTPAEYVLGLRYMNGEGV 91 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------------------------CHHHHHHHHHHHHcCCCC
Confidence 677777777777710001789999999999988765 55678888888888
Q ss_pred CCChHHHHHHHHHhhcCCCCChhhHHHH----------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 036198 190 CGLVDYAETICKRVKNKVKPNANTYNIL----------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK----ARM 249 (499)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~p~~~~~~~l----------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 249 (499)
.+++++|.+.|++..+.. +...+..+ |...|+...+.| +...+..+...|.. .++
T Consensus 92 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 899999999999986532 33343333 777787777765 56677788888877 789
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cC
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AG 321 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g 321 (499)
+++|.+.|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+
T Consensus 167 ~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 999999999998876 57788888888888 899999999999998875 56677777777876 78
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc-----CC
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-----GE 392 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~ 392 (499)
++++|.+.|+...+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 9999999999988875 45677777777877 899999999999998765 455777788888877 89
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV----IGDLGA 465 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 465 (499)
.++|...+++..+.| +...+..+...|...| +.++|.+++++..+.| +...+..+...|.. .++.++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998874 5567777777887766 7899999999999885 67788888888988 899999
Q ss_pred HHHHHHHHHhhcChhHHHHHH
Q 036198 466 IHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~~~~~~ 486 (499)
|.+.+++..+...+.....++
T Consensus 386 A~~~~~~A~~~~~~~a~~~Lg 406 (490)
T 2xm6_A 386 AAIWMRKAAEQGLSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 999999998876655444333
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=8.7e-12 Score=124.93 Aligned_cols=183 Identities=9% Similarity=0.013 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 036198 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCL-------AGKVE-------EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 355 (499)
++..+|++..... +.+...|......+.+ .|+++ +|.+++++..+.-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777776542 3456677777776665 68876 8999999988632233678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH-HHhCCCHHHHH
Q 036198 356 KNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG-LFDCSKVEEAC 432 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 432 (499)
|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999985 354 2578888888899999999999999998752 1222333322222 33689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.+|++..+.. +-+...|..++..+.+.|+.++|..+|++..+..
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999998765 2368899999999999999999999999998864
No 32
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=3.6e-12 Score=115.92 Aligned_cols=232 Identities=9% Similarity=-0.040 Sum_probs=204.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
+..++..+...+...|++++|++.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 56778889999999999999999999999855 46788889999999 999999999999999886 778
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhH
Q 036198 309 TYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTY 380 (499)
Q Consensus 309 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 380 (499)
.+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 88889999999 999999999999998875 67888999999999 999999999999999876 56677
Q ss_pred HHHHHHHHh----cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 381 NMLISMYFE----LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 381 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 888888888 899999999999998874 56778888889998 999999999999999886 3677888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhhcChhHHHHH
Q 036198 453 YLMQLSV----IGDLGAIHKLSDHMRKFYNPVIARRL 485 (499)
Q Consensus 453 ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 485 (499)
+...|.. .|++++|.+.+++..+..++.....+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899998 99999999999999998877554444
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=2.7e-15 Score=141.25 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=105.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+.
T Consensus 15 ~~~~ld~A~~fae~~~-----------------------------~~~vWs~La~A~l~~g~~~eAIdsfika------- 58 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----------------------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------
Confidence 6778999999988872 2249999999999999999999998643
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
+|..+|..++.++...|++++|++.++...+. .++..+.+.++.+|.+.|++++
T Consensus 59 ---------------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-----~~~~~i~~~Li~~Y~Klg~l~e 112 (449)
T 1b89_A 59 ---------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-----ARESYVETELIFALAKTNRLAE 112 (449)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred ---------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CccchhHHHHHHHHHHhCCHHH
Confidence 36778899999999999999999977776663 2457888999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 291 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
+.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..+..++.+.|++++|.+.+.++
T Consensus 113 ~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 113 LEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp HTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 998884 377789999999999999999999999976 48999999999999999999999988
Q ss_pred CCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 371 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
.+..+|..++.+|...|+++.|......+ ..++.-...++..|.+.|++++|..+++...... +-....|
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~f 244 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 244 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHH
Confidence 37899999999999999999996655542 2344445578999999999999999999887654 3455666
Q ss_pred HHHHHHHHhc
Q 036198 451 DSYLMQLSVI 460 (499)
Q Consensus 451 ~~ll~~~~~~ 460 (499)
.-+..+|++-
T Consensus 245 tel~il~~ky 254 (449)
T 1b89_A 245 TELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 6666666553
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.2e-13 Score=119.99 Aligned_cols=228 Identities=14% Similarity=0.112 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcC----
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPD---- 306 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~---- 306 (499)
....+..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...+++..+... .++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 35678889999999999999999999998874 4678999999999999999999999999887531 112
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
..++..+...+...|++++|.+.++...+.. |+. ..+.+.|++++|...++.+.... +.+...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 5788899999999999999999999998853 442 45677789999999999998854 2346688899999
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 466 (499)
+...|++++|.+.+++..+.. +.+...+..+...|...|++++|...+++..+... .+...+..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999998763 33678899999999999999999999999998763 4688899999999999999999
Q ss_pred HHHHHHHHhhc
Q 036198 467 HKLSDHMRKFY 477 (499)
Q Consensus 467 ~~~~~~m~~~~ 477 (499)
.+.+++..+..
T Consensus 227 ~~~~~~a~~~~ 237 (258)
T 3uq3_A 227 LETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999887
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=1e-12 Score=129.65 Aligned_cols=333 Identities=10% Similarity=-0.020 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhC--
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-PEINALNLLLDALCKC-- 190 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~li~~~~~~-- 190 (499)
...+|+.+..++. ..|++++|...+++........ ..... ....++.....++...
T Consensus 93 ~~~~~~nla~~y~----~~g~~~~A~~~~~ka~~i~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~ 151 (472)
T 4g1t_A 93 SLVTWGNYAWVYY----HMGRLSDVQIYVDKVKHVCEKF-----------------SSPYRIESPELDCEEGWTRLKCGG 151 (472)
T ss_dssp THHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHS-----------------CCSSCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHhHhc-----------------ccccchhhHHHHHHHHHHHHHHcc
Confidence 5678999999999 9999999999998876432100 00011 2345666666666554
Q ss_pred CChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHh
Q 036198 191 GLVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK----ARMVT 251 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 251 (499)
+++++|.+.|++..+..|.+...+..+ |++.++...+... .+...+..+...+.. .|+++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 568999999998876433344333333 4445555544332 244555555444443 35567
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc-----------
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA----------- 320 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------- 320 (499)
+|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+..++..+...|...
T Consensus 231 ~a~~~~~~al~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 231 EGEKLVEEALEKA----PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp HHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhC----ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7777777777664 4456677777777888888888888887777653 23444555554444321
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh--hHHHHHH-HHHh
Q 036198 321 --------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ--TYNMLIS-MYFE 389 (499)
Q Consensus 321 --------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~-~~~~ 389 (499)
+..+.|...++...+.+. .+..++..+...+...|++++|...|++..+....+... .+..+.. ....
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 234556666666555432 245566777777777777777877777777654322211 1222222 2335
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
.|+.++|...|++..+. .|+...... ....+..+++...... +.+..+|..+..+|...|++++|.+.
T Consensus 385 ~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 385 MKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp SSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777777777777664 343322211 1233344555555444 34678999999999999999999999
Q ss_pred HHHHHhhcChhHHHHHH
Q 036198 470 SDHMRKFYNPVIARRLA 486 (499)
Q Consensus 470 ~~~m~~~~~~~~~~~~~ 486 (499)
+++..+..+..+....+
T Consensus 453 y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 453 SERGLESGSLIPSASSW 469 (472)
T ss_dssp -----------------
T ss_pred HHHHHhcCCCCCcHhhc
Confidence 99999877665554433
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=3.1e-13 Score=118.35 Aligned_cols=209 Identities=10% Similarity=-0.009 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 455666777777777777777777777777654 3456677777777777777777777777777653 33455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...+...+. .. .. .+...|++++|...+++..+... -+...+..+..++...|
T Consensus 78 ~lg~~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 78 VLSEAYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcC
Confidence 66666665500 00 00 00111445555555554444321 12334444444555555
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 471 (499)
++++|...|++..+.. .+...+..+..+|...|++++|...+++..+... -+...+..+..++...|++++|.+.++
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555555555544443 3444445555555555555555555555544431 234444455555555555555555544
Q ss_pred HH
Q 036198 472 HM 473 (499)
Q Consensus 472 ~m 473 (499)
+.
T Consensus 210 ~~ 211 (217)
T 2pl2_A 210 LE 211 (217)
T ss_dssp --
T ss_pred HH
Confidence 43
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.8e-12 Score=114.95 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH
Confidence 4567777778888888888888888887764 3456777777888888888888888888777653 3356666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 777777777777777777776632223 34556666666666777777777776666543 1234555556666666666
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
+++|...++.+.+.. +.+...+..+...+...|+.++|.++++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666655432 234445555555555556666666665555544
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=3.7e-13 Score=117.87 Aligned_cols=179 Identities=9% Similarity=-0.037 Sum_probs=138.6
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 383 (499)
+++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345556666667777777777777777777665432 56667777777777777777777777777653 1245566677
Q ss_pred HHHHHhc-----------CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 384 ISMYFEL-----------GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 384 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
..++... |++++|...+++..+.. +-+...+..+...+...|++++|...+++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 99999999999998753 2257788889999999999999999999999887 68899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
+..+|...|++++|...+++..+..|....-.+.+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999888766555444
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.9e-12 Score=116.03 Aligned_cols=208 Identities=12% Similarity=0.055 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5678888899999999999999999998864 45678899999999999999999999999887643 367889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743344 45678889999999999999999999988753 3357888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHH
Q 036198 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 431 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
|...++++.+... .+...+..+...+...|+.++|.++++++.+.++....-
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999987653 577788889999999999999999999999988775543
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.2e-12 Score=113.17 Aligned_cols=201 Identities=6% Similarity=-0.071 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD----PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 34455566666666666666666666666553 3345556666666666666666666666655542 234445555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 313 VLEGMCLA-GKVEEAYKFLEEMGNKGYPPD-IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 313 ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
+...+... |++++|.+.++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 55555555 555555555555554211121 3344445555555555555555555554432 11233444444444444
Q ss_pred CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
|++++|.+.++...+.....+...+..+...+...|+.++|..+++.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444444332111233333334444444444444444444443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-12 Score=117.65 Aligned_cols=229 Identities=11% Similarity=0.018 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
...|..+...+...|++++|.+.|++..+ .. .+...+..+..++...|++++|++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------------------~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 60 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWE----------------------LH--KDITYLNNRAAAEYEKGEYETAIST 60 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HS--CCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH----------------------hh--ccHHHHHHHHHHHHHcccHHHHHHH
Confidence 45788899999999999999999988754 12 5778899999999999999999999
Q ss_pred HHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 257 FEFMRTKGSTISSPT----AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
|++..+.... ..++ ..++..+...+...|++++|...|++..+.. |+. ..+.+.|++++|.+.++.
T Consensus 61 ~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 61 LNDAVEQGRE-MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHH
Confidence 9998875421 1122 5889999999999999999999999999863 443 456777899999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 412 (499)
+..... .+...+..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...++...+.. +.+.
T Consensus 131 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 207 (258)
T 3uq3_A 131 EAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFV 207 (258)
T ss_dssp HHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHH
Confidence 988642 256778889999999999999999999998864 2467889999999999999999999999998763 3357
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
..|..+...+...|++++|...+++..+..
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 889999999999999999999999987653
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=4.8e-12 Score=111.00 Aligned_cols=214 Identities=7% Similarity=-0.011 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
+.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++...+... .+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 3456788899999999999999999999998864 45678899999999999999999999999887643 367889999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 349 LKVLCDN-KNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 349 i~~~~~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999988333343 5788889999999999999999999988753 235788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHH
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 485 (499)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.++....-..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999988753247778888888889999999999999999988776655443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=9.8e-13 Score=119.41 Aligned_cols=244 Identities=9% Similarity=-0.037 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--HHhH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD--VSTY 310 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~ 310 (499)
|...+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.+..++ ...|
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 34456677888999999999999999999875 33556888899999999999999999999998432222 2348
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
..+...+...|++++|.+.|+...+.... +..++..+...|...|++++|...+++..+.. +.+...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 88999999999999999999999886433 66789999999999999999999999988763 23456777777344455
Q ss_pred CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhc
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKG-LKLP------YRKFDSYLMQLSVI 460 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~~ 460 (499)
+++++|.+.++...+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 69999999999998753 2346777778888887787 888888888877542 1133 25778888999999
Q ss_pred CCHHHHHHHHHHHHhhcChhHHH
Q 036198 461 GDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
|++++|.+.+++..+..|....-
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999988775543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=9.3e-13 Score=119.68 Aligned_cols=250 Identities=8% Similarity=-0.002 Sum_probs=191.4
Q ss_pred hCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 036198 189 KCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 268 (499)
..|++++|.+.|+++.+..+.+ .+.+..++..+..++...|++++|...|++..+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 73 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT-------------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---- 73 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred ccchHHHHHHHHHHHHhccccc-------------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----
Confidence 4578889999988876531100 01146788899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
+.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. |+.......
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~ 150 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLW 150 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHH
Confidence 4578899999999999999999999999999864 4467888999999999999999999999998753 444445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCC--C-CHHHHHHHHHHHHhC
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA--Q-DVDTYCVMIDGLFDC 425 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~ 425 (499)
+..+...|++++|...+++..... .++...+ .++..+...++.++|.+.+....+.... | +...+..+...|...
T Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 151 LYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 556677899999999998877653 2333444 4777778888889999999988664211 1 156788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 426 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
|++++|...++++.+.. |+. +.....++...|++++|.+.+
T Consensus 229 g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 229 GDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999998765 422 233355677888888887765
No 45
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.53 E-value=1.9e-10 Score=121.13 Aligned_cols=356 Identities=13% Similarity=0.104 Sum_probs=246.7
Q ss_pred CCCCCCHHHHHHHHHccCCChHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcc
Q 036198 75 LGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH-QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV 153 (499)
Q Consensus 75 ~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 153 (499)
+-..-+++++..+|..- ...-..+.+|... ...-+.++.--...++.|. ..|.+.+|.+++++..-.+....
T Consensus 947 lv~r~d~~lW~~vl~~~---n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~----~aglp~EaieLLEKivl~~s~fs 1019 (1630)
T 1xi4_A 947 LVRRKDPELWGSVLLES---NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFM----TADLPNELIELLEKIVLDNSVFS 1019 (1630)
T ss_pred HHHhcCHHHHHHHhcCC---cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHH----hCCCHHHHHHHHHHHHcCCCccc
Confidence 33456778888888442 2223445555321 0111235555677788888 89999999999999985532111
Q ss_pred cHHHHHH-HHHHHHHh-----hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH--HHHHHHHH
Q 036198 154 PVDVLLM-ILKQYTEK-----IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLEEM 225 (499)
Q Consensus 154 ~~~~~~~-~l~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l--a~~~~~~m 225 (499)
+...+.. +++.-.+. ...-...+......+...+...|.+++|.++|++... .....+.+ ...-+++.
T Consensus 1020 ~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie~i~nldrA 1095 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV----NTSAVQVLIEHIGNLDRA 1095 (1630)
T ss_pred ccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHHHHhhHHHH
Confidence 1111211 22222222 0000011222244567888899999999999999742 11111222 11222222
Q ss_pred HHc--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036198 226 IQM--GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303 (499)
Q Consensus 226 ~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 303 (499)
.+. .+ -+..+|..+..++.+.|++++|++.|.+. -|...|.-++.++.+.|++++|.+.+....+..
T Consensus 1096 iE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~- 1164 (1630)
T 1xi4_A 1096 YEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA- 1164 (1630)
T ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-
Confidence 211 12 25788999999999999999999999653 367888999999999999999999999877764
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 383 (499)
++....+.+..+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+
T Consensus 1165 -~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rL 1227 (1630)
T 1xi4_A 1165 -RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 1227 (1630)
T ss_pred -ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHH
Confidence 44444456999999999988644443 2 246677888999999999999999999985 489999
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+
T Consensus 1228 A~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999876 2567888888888888888888776543 345666777888888889999
Q ss_pred HHHHHHHHHHHhhcChh
Q 036198 464 GAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 464 ~~a~~~~~~m~~~~~~~ 480 (499)
++|..+++......+.+
T Consensus 1297 eEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHHHHHHHHhccChhH
Confidence 99888888876655443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=6.8e-12 Score=113.82 Aligned_cols=251 Identities=10% Similarity=0.010 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
..+......+...|++++|...|++..+. .+.+...+..+..++...|++++|++.|
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 60 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK-----------------------KYNSPYIYNRRAVCYYELAKYDLAQKDI 60 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT-----------------------TCCCSTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45566778889999999999999988652 1124557888899999999999999999
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036198 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 258 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 337 (499)
++..+.... ......+|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+..
T Consensus 61 ~~a~~~~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 61 ETYFSKVNA-TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHTTSCT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHhccCc-hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 999984311 22335668999999999999999999999999864 4466789999999999999999999999988773
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC---chHHHHHHHHHhHCC-CCCC--
Q 036198 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE---PDGAFETWHEMDKRG-CAQD-- 411 (499)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~-- 411 (499)
+.+...|..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+
T Consensus 139 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 139 -TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 3356677777734455679999999999998854 2346777788888888888 888999998876541 1233
Q ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036198 412 ----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456 (499)
Q Consensus 412 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 456 (499)
..+|..+...|...|++++|.+.+++..+... -+......+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~ 264 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDP-TNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-cHHHHHHHhhhh
Confidence 25778888899999999999999999998762 245555444433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=4.3e-11 Score=108.68 Aligned_cols=224 Identities=8% Similarity=-0.010 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHh
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK----ARMVT 251 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 251 (499)
+..++..+...+...|++++|.+.|++..+ +-+...+..+...|.. .++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------------------------~~~~~a~~~lg~~~~~g~~~~~~~~ 59 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-------------------------LKENSGCFNLGVLYYQGQGVEKNLK 59 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------------------CCCHHHHHHHHHHHHcCCCcCCCHH
Confidence 567888899999999999999999988754 1256678888899999 99999
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKV 323 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~ 323 (499)
+|.+.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 60 ~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 60 KAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred HHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCH
Confidence 9999999999875 67889999999999 999999999999999875 77888889999999 9999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh----cCCchH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE----LGEPDG 395 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~ 395 (499)
++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 99999999999876 56778888888888 999999999999998865 46778888899999 999999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 442 (499)
|.+.+++..+.+ +...+..+...|.. .+++++|.+.+++..+.|
T Consensus 205 A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 205 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999998874 36678888888888 999999999999999887
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.6e-12 Score=115.74 Aligned_cols=203 Identities=13% Similarity=0.082 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 355667777888888888888888888888764 4567788888888888888888888888887763 34567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 777888888888888888887776542 356677777777778888888888887777643 234566667777777777
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
++++|.+.++.+.+.. +.+..++..+...|...|++++|...++++.+..
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777766542 2345566666666777777777777777666554
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=9.8e-13 Score=119.52 Aligned_cols=232 Identities=8% Similarity=-0.110 Sum_probs=186.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 324 (499)
...|++++|+..|+++.+......+.+..++..+...+...|++++|...|++..+.. +.+...+..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999987421012246788999999999999999999999999874 456889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
+|.+.++...+... .+..++..+...+.+.|++++|...|+++.+.. |+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999988643 267889999999999999999999999998854 555555555566677899999999998776
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL---PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
... +++...+ .+...+...++.++|...+.+..+..... +...+..+..+|.+.|++++|.+.+++..+..+...
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 642 2333334 46777778888999999999886553211 157888899999999999999999999999877543
Q ss_pred H
Q 036198 482 A 482 (499)
Q Consensus 482 ~ 482 (499)
.
T Consensus 250 ~ 250 (275)
T 1xnf_A 250 V 250 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=7.7e-12 Score=118.75 Aligned_cols=238 Identities=11% Similarity=0.035 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR-MEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
...|..+...+.+.|++++|++.|++..+.. +-+..+|+.+..++...|+ +++|+..|++..+.. +-+...|..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 4678888899999999999999999999975 4578899999999999997 999999999999875 457788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh-cC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE-LG 391 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~ 391 (499)
+..++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987544 788999999999999999999999999998653 367889999999999 56
Q ss_pred CchHH-----HHHHHHHhHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 036198 392 EPDGA-----FETWHEMDKRGCAQDVDTYCVMIDGLFDCS--KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG--- 461 (499)
Q Consensus 392 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--- 461 (499)
..++| ++.+++..+.. +-+...|..+...+...| ++++|.+.+.++ +.. +.+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 65888 48888877653 225678888888888888 689999999888 433 446788889999998874
Q ss_pred -----C-HHHHHHHHHHH-HhhcChhH
Q 036198 462 -----D-LGAIHKLSDHM-RKFYNPVI 481 (499)
Q Consensus 462 -----~-~~~a~~~~~~m-~~~~~~~~ 481 (499)
+ .++|.++++++ .+..+...
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhH
Confidence 3 58999999999 66655433
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.5e-12 Score=115.85 Aligned_cols=213 Identities=12% Similarity=0.051 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 036198 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349 (499)
Q Consensus 270 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 349 (499)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 345678888889999999999999999998764 45688888999999999999999999999887643 3678889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 3467788999999999999999999999988753 346778889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
+|...++++.+... .+..++..+..+|...|++++|.+.++++.+..+....-...+
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 99999999988753 4688899999999999999999999999999887766655544
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.6e-10 Score=113.91 Aligned_cols=325 Identities=12% Similarity=-0.033 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhCC
Q 036198 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP-EINALNLLLDALCKCG 191 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 191 (499)
.....||.+..++. ..|++++|++.|++..+... +.......| ...+|+.+...|...|
T Consensus 49 ~~a~~yn~Lg~~~~----~~G~~~eAl~~~~kAl~~~~----------------~~~~~~~~~~~~~~~~nla~~y~~~g 108 (472)
T 4g1t_A 49 FKATMCNLLAYLKH----LKGQNEAALECLRKAEELIQ----------------QEHADQAEIRSLVTWGNYAWVYYHMG 108 (472)
T ss_dssp -CCHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHH----------------HHSGGGCTTTTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHH----------------hcCccccchHHHHHHHHHHHHHHHcC
Confidence 45678999988888 89999999999988654210 000001123 4578999999999999
Q ss_pred ChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcCCCCCC
Q 036198 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA--RMVTEAADLFEFMRTKGSTISS 269 (499)
Q Consensus 192 ~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~ 269 (499)
++++|...|++..+- ..............++.....++.+. +++++|++.|++..+.. +
T Consensus 109 ~~~~A~~~~~ka~~i---------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p 169 (472)
T 4g1t_A 109 RLSDVQIYVDKVKHV---------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----P 169 (472)
T ss_dssp CHHHHHHHHHHHHHH---------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----T
T ss_pred ChHHHHHHHHHHHHH---------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----C
Confidence 999999999886531 00000000111344555555444443 45778888888777754 2
Q ss_pred CCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 036198 270 PTAKTYAIMIVA---LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDI 342 (499)
Q Consensus 270 p~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~ 342 (499)
-+...+..+..+ +...++.++|++.+++..+.. +.+...+..+...+.. .|++++|.+.+++...... .+.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~ 247 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVT 247 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHH
Confidence 234444444333 334566677777777766653 3344555544444443 3556677777777665532 255
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc-------------------CCchHHHHHHHHH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-------------------GEPDGAFETWHEM 403 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m 403 (499)
.++..+...|...|++++|...+++..+... -+..++..+..+|... +..+.|...++..
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6677777777788888888888877776431 2344555554444321 2245566666665
Q ss_pred hHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR--KFDSYLM-QLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+.. +.+..++..+...|...|++++|...|++..+....+... .+..+.. .....|+.++|.+.+++..+..+..
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 5432 2234456667777777888888888888777665332221 1222222 2345677788887777777665543
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=3e-12 Score=123.77 Aligned_cols=284 Identities=12% Similarity=-0.004 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CH----HHHHHHHHHHHhcCCHh
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DN----FTYNTAIDTFCKARMVT 251 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~----~~~~~li~~~~~~g~~~ 251 (499)
...+..+...+...|++++|...|++..+. .| +. ..+..+...|...|+++
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~lg~~~~~~g~~~ 103 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA------------------------GTEDLRTLSAIYSQLGNAYFYLGDYN 103 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CCSCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh------------------------cccChhHHHHHHHHHHHHHHHCCCHH
Confidence 345566777889999999999999987652 12 22 46888899999999999
Q ss_pred HHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCcCHHhHHHHHHHHHhcCC--
Q 036198 252 EAADLFEFMRTKGST--ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS----G-CLPDVSTYKEVLEGMCLAGK-- 322 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~g~-- 322 (499)
+|++.|++..+.... ..+....++..+...|...|++++|...+++..+. + ......++..+...|...|+
T Consensus 104 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 999999988764100 01234567888999999999999999999987754 1 12234577888889999999
Q ss_pred ---------------HHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC----h
Q 036198 323 ---------------VEEAYKFLEEMGNK----GY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PS----V 377 (499)
Q Consensus 323 ---------------~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~ 377 (499)
+++|.+.+++..+. +. .....++..+...+...|++++|...+++..+.... ++ .
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999998876442 11 112357888889999999999999999988753211 11 2
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCC----CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----C-CCCH
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRG----CA-QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG----L-KLPY 447 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~ 447 (499)
.++..+...|...|++++|.+.+++..+.. .. ....++..+...|...|++++|...+++..+.. . ....
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 378889999999999999999999876531 10 124677888899999999999999999887541 1 1124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 448 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.++..+..+|...|++++|.+++++..+.....-.+.
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 380 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXX 380 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 5778888999999999999999999998877654433
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=6.5e-12 Score=120.96 Aligned_cols=308 Identities=11% Similarity=-0.040 Sum_probs=224.4
Q ss_pred CCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHhC
Q 036198 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE--INALNLLLDALCKC 190 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 190 (499)
.....+......+. ..|++++|...|++...... .+ +. ..+|..+...+...
T Consensus 7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~--~~--------------------~~~~~~~~~~l~~~~~~~ 60 (406)
T 3sf4_A 7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVGT--ED--------------------LKTLSAIYSQLGNAYFYL 60 (406)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC--SC--------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcCc--cc--------------------HHHHHHHHHHHHHHHHHh
Confidence 45566667777777 89999999999999988752 01 11 35788899999999
Q ss_pred CChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--
Q 036198 191 GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI-- 267 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-- 267 (499)
|++++|...|++... .....+..| ...++..+...+...|++++|...+++..+.....
T Consensus 61 g~~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 122 (406)
T 3sf4_A 61 HDYAKALEYHHHDLT------------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122 (406)
T ss_dssp TCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHH------------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999988643 111222222 35578888999999999999999999887642100
Q ss_pred CCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHhcCC
Q 036198 268 SSPTAKTYAIMIVALVQNDR--------------------MEECFSLLGHMINS----GCL-PDVSTYKEVLEGMCLAGK 322 (499)
Q Consensus 268 ~~p~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~ 322 (499)
......++..+...|...|+ +++|...+.+..+. +.. ....++..+...|...|+
T Consensus 123 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 202 (406)
T 3sf4_A 123 KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 202 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB
T ss_pred ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC
Confidence 01114578888899999999 99999999887643 111 123567888889999999
Q ss_pred HHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCcC-hhhHHHHHHHHHhcCC
Q 036198 323 VEEAYKFLEEMGNKGY-PPD----IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWPS-VQTYNMLISMYFELGE 392 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~-~~~~~~li~~~~~~~~ 392 (499)
+++|.+.+++..+... .++ ..++..+...+...|++++|...+++..+.. ..+. ..++..+...|...|+
T Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 9999999988764311 111 2378888899999999999999999877531 1111 5578889999999999
Q ss_pred chHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 036198 393 PDGAFETWHEMDKR----GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 393 ~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~ 462 (499)
+++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99999999987653 1111 1457778888999999999999999987643 211 124466677778877777
Q ss_pred HH
Q 036198 463 LG 464 (499)
Q Consensus 463 ~~ 464 (499)
..
T Consensus 363 ~~ 364 (406)
T 3sf4_A 363 SY 364 (406)
T ss_dssp TS
T ss_pred hH
Confidence 63
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.1e-11 Score=115.79 Aligned_cols=249 Identities=9% Similarity=0.057 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HhHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM-VTEAAD 255 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~ 255 (499)
..+|+.+...+.+.|++++|++.|++.... .+-+...|+.+..++...|+ +++|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-----------------------~P~~~~a~~~~g~~l~~~g~d~~eAl~ 153 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-----------------------NAANYTVWHFRRVLLKSLQKDLHEEMN 153 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----------------------CccCHHHHHHHHHHHHHcccCHHHHHH
Confidence 457888999999999999999999987651 12267788999999999997 999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.|++..+.. +-+..+|+.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++
T Consensus 154 ~~~~al~l~----P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 154 YITAIIEEQ----PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999986 4578999999999999999999999999999875 45788899999999999999999999999998
Q ss_pred CCCCCCHhhHHHHHHHHHH-cCCHHHH-----HHHHHHHHHCCCCcChhhHHHHHHHHHhcC--CchHHHHHHHHHhHCC
Q 036198 336 KGYPPDIVTYNCFLKVLCD-NKNGDEA-----LRLYGRMIEVGCWPSVQTYNMLISMYFELG--EPDGAFETWHEMDKRG 407 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~ 407 (499)
.+.. +...|+.+..++.+ .|..++| +..|++..+... -+...|+.+...+...| ++++|.+.+.++ +.
T Consensus 229 l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~- 304 (382)
T 2h6f_A 229 EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP- 304 (382)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-
T ss_pred hCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-
Confidence 7654 78899999999999 6665777 588888887542 34678888888888888 689999999988 33
Q ss_pred CCCCHHHHHHHHHHHHhCC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCS---------KVEEACFLLEEV-VNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~ 458 (499)
...+...+..+...|.+.| ..++|.++++++ .+.. +.....|..+...+.
T Consensus 305 ~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 3446778888999998864 358999999998 5543 223445555555443
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.5e-10 Score=107.19 Aligned_cols=223 Identities=15% Similarity=0.070 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ-------NDRM-------EECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
++|..+|++..... +-+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..+...
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 68889999998874 4578888888887763 5775 8999999999873123456688999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH-hcCCc
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPD-IV-TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEP 393 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~ 393 (499)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.
T Consensus 109 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999885 343 33 799999999999999999999999988642 34445544333322 36999
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKL--PYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999987652 2367888899999999999999999999999873 454 4668888899999999999999999
Q ss_pred HHHHhhcChhH
Q 036198 471 DHMRKFYNPVI 481 (499)
Q Consensus 471 ~~m~~~~~~~~ 481 (499)
+++.+.+|...
T Consensus 265 ~~a~~~~p~~~ 275 (308)
T 2ond_A 265 KRRFTAFREEY 275 (308)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHccccc
Confidence 99999888643
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=5.7e-12 Score=121.36 Aligned_cols=284 Identities=14% Similarity=0.046 Sum_probs=212.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHh
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD--NFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~ 251 (499)
......+......+...|++++|...|++..+..+. .|. ...+..+...+...|+++
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~ 64 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------DLKTLSAIYSQLGNAYFYLHDYA 64 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc---------------------cHHHHHHHHHHHHHHHHHhcCHH
Confidence 456667888889999999999999999987652100 111 357888899999999999
Q ss_pred HHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcC----HHhHHHHHHHHHhcCC--
Q 036198 252 EAADLFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC-LPD----VSTYKEVLEGMCLAGK-- 322 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~-- 322 (499)
+|...|++........ .+....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 65 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 9999999875531000 112256788888999999999999999998875410 011 4477888889999999
Q ss_pred ------------------HHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcC--
Q 036198 323 ------------------VEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-WPS-- 376 (499)
Q Consensus 323 ------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~-- 376 (499)
+++|.+.+++.... +..| ...++..+...+...|++++|...+++..+... .++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999998876432 2111 235688888999999999999999998875311 111
Q ss_pred --hhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC--
Q 036198 377 --VQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LP-- 446 (499)
Q Consensus 377 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-- 446 (499)
..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 347888999999999999999999987643 1111 1457788889999999999999999988754211 12
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 447 --YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 447 --~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
..++..+...|...|++++|.+.+++..+...
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55778888999999999999999999877643
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=5.1e-12 Score=118.06 Aligned_cols=281 Identities=14% Similarity=0.027 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHhHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD--NFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~ 255 (499)
..+......+...|++++|...|++..+.. |+ .|. ...+..+...+...|++++|.+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~--------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 64 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TE--------------------DLKTLSAIYSQLGNAYFYLHDYAKALE 64 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS--------------------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cc--------------------cHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666778899999999999999876520 00 011 4578888999999999999999
Q ss_pred HHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcC----HHhHHHHHHHHHhcCC------
Q 036198 256 LFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC-LPD----VSTYKEVLEGMCLAGK------ 322 (499)
Q Consensus 256 ~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~------ 322 (499)
.+++..+..... .+....++..+...+...|++++|...+.+..+... .++ ..++..+...+...|+
T Consensus 65 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 999876531000 112356788889999999999999999998765311 112 3477788889999999
Q ss_pred --------------HHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----C-CcChh
Q 036198 323 --------------VEEAYKFLEEMGNK----GY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----C-WPSVQ 378 (499)
Q Consensus 323 --------------~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~~~~~ 378 (499)
+++|.+.+++.... +. .....++..+...+...|++++|...+++..+.. . .....
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99999998876432 11 1123467888889999999999999999877531 1 11134
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----C-CCCHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKR----GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG----L-KLPYR 448 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~~ 448 (499)
++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+.. - .....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888899999999999999999987643 1111 14577788889999999999999999886531 1 11244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
++..+...|.+.|++++|.+.+++..+..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 7778889999999999999999999886543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=1.6e-11 Score=114.70 Aligned_cols=280 Identities=10% Similarity=-0.024 Sum_probs=206.4
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
+......+. ..|++++|...|++..+.... +.. .-...+..+...+...|++++|.
T Consensus 8 l~~~g~~~~----~~g~~~~A~~~~~~al~~~~~--~~~------------------~~~~~~~~l~~~~~~~g~~~~A~ 63 (338)
T 3ro2_A 8 LALEGERLC----KSGDCRAGVSFFEAAVQVGTE--DLK------------------TLSAIYSQLGNAYFYLHDYAKAL 63 (338)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHCCS--CHH------------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH----HhccHHHHHHHHHHHHhhCcc--cHH------------------HHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455556 899999999999999887520 000 00357888999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC----H
Q 036198 198 TICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT----A 272 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~----~ 272 (499)
+.+++... .....+..| ...++..+...+...|++++|...+++..+.... .++ .
T Consensus 64 ~~~~~al~------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~ 123 (338)
T 3ro2_A 64 EYHHHDLT------------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE--LNDKVGEA 123 (338)
T ss_dssp HHHHHHHH------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHH
T ss_pred HHHHHHHH------------------HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--hcCchHHH
Confidence 99988643 111112222 3567888899999999999999999987664210 112 4
Q ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CC-CcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 273 KTYAIMIVALVQNDR--------------------MEECFSLLGHMINS----GC-LPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
.++..+...+...|+ +++|...+++..+. +. ......+..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 478888889999999 99999999887542 21 112346778888999999999999
Q ss_pred HHHHHHHhCC----C-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-ChhhHHHHHHHHHhcCCchHHH
Q 036198 328 KFLEEMGNKG----Y-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWP-SVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 328 ~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~ 397 (499)
+.+++..+.. . .....++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9998876431 1 1113378888899999999999999999876531 111 1557788899999999999999
Q ss_pred HHHHHHhHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 398 ETWHEMDKR----GC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 398 ~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
..+++..+. +- .....++..+...|...|++++|...+++..+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999987653 11 112446778889999999999999999998865
No 60
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.41 E-value=1.1e-09 Score=115.35 Aligned_cols=381 Identities=11% Similarity=0.059 Sum_probs=199.1
Q ss_pred ccccccCcchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhcc--CCCchHHHHHhhCCCC
Q 036198 2 TLAHLVSPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNS--NAYDNMEKALDSLGVP 78 (499)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~al~~~~~~ 78 (499)
.|.|...|+.++ .+++++ ..+....++..+...... .+. .+....+.+.|+..- ...++..+.+..++ .
T Consensus 978 aL~e~~~PeeVs--~~vKaf~~aglp~EaieLLEKivl~----~s~-fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-~ 1049 (1630)
T 1xi4_A 978 ALSETQDPEEVS--VTVKAFMTADLPNELIELLEKIVLD----NSV-FSEHRNLQNLLILTAIKADRTRVMEYINRLD-N 1049 (1630)
T ss_pred hcccccCHHHhH--HHHHHHHhCCCHHHHHHHHHHHHcC----CCc-ccccHHHHHHHHHHHHHhChhhHHHHHHHhh-h
Confidence 466778888775 345555 344444444444332211 110 011223333344333 24455666666666 3
Q ss_pred CCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHH
Q 036198 79 LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158 (499)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 158 (499)
.+.+.+..++...+ ..+.|..+|+... -.....+.++. ..+++++|.++.++... ..++
T Consensus 1050 ~d~~eIA~Iai~lg-lyEEAf~IYkKa~------~~~~A~~VLie-------~i~nldrAiE~Aervn~-------p~vW 1108 (1630)
T 1xi4_A 1050 YDAPDIANIAISNE-LFEEAFAIFRKFD------VNTSAVQVLIE-------HIGNLDRAYEFAERCNE-------PAVW 1108 (1630)
T ss_pred ccHHHHHHHHHhCC-CHHHHHHHHHHcC------CHHHHHHHHHH-------HHhhHHHHHHHHHhcCC-------HHHH
Confidence 33444555554433 3445777776541 12222333433 45677777777765421 1111
Q ss_pred HHHHHHHHHh-------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 159 LMILKQYTEK-------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 159 ~~~l~~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
..+-+++... ....-..|...|..++..|.+.|++++|.+.|....+ ..
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk----------------------~~-- 1164 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARK----------------------KA-- 1164 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------hc--
Confidence 1111111111 0000012333444444444444444444444443322 11
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
+++...+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|.
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI----~------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFI----N------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHH----h------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence 22222223666666666655432221 1 234455555666666666666666666663 3566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...|++.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..+...+..++..|.+.|
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcC
Confidence 6666666667777666666655 2456666666666666666666655443 2235566678888888889
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC--SKVEEACFLLEEVVNKGLKL------PYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~ 463 (499)
.+++|..+++...... +-....|+-+...|++. ++..++.++|..- -+++| +...|..+.-.|.+.|++
T Consensus 1295 ~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred CHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 9999998887766543 23445666666666653 3444444444421 12222 355788888888889999
Q ss_pred HHHHH
Q 036198 464 GAIHK 468 (499)
Q Consensus 464 ~~a~~ 468 (499)
+.|..
T Consensus 1372 dnA~~ 1376 (1630)
T 1xi4_A 1372 DNAII 1376 (1630)
T ss_pred HHHHH
Confidence 88874
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=2.1e-11 Score=117.81 Aligned_cols=279 Identities=13% Similarity=0.003 Sum_probs=208.7
Q ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCH----HHHHHHHHHHHhCCC
Q 036198 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI----NALNLLLDALCKCGL 192 (499)
Q Consensus 117 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 192 (499)
.+..+...+. ..|++++|...|++..+... .+. .+|..+...|...|+
T Consensus 50 ~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~------------------------~~~~~~~~~~~~lg~~~~~~g~ 101 (411)
T 4a1s_A 50 ELALEGERLC----NAGDCRAGVAFFQAAIQAGT------------------------EDLRTLSAIYSQLGNAYFYLGD 101 (411)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC------------------------SCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH----HhCcHHHHHHHHHHHHHhcc------------------------cChhHHHHHHHHHHHHHHHCCC
Confidence 3444555666 89999999999999988752 122 478889999999999
Q ss_pred hHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CC
Q 036198 193 VDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI--SS 269 (499)
Q Consensus 193 ~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~ 269 (499)
+++|.+.|++..+ .....+..| ....+..+...|...|++++|.+.|++..+..... .+
T Consensus 102 ~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 163 (411)
T 4a1s_A 102 YNKAMQYHKHDLT------------------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163 (411)
T ss_dssp HHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHH------------------HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH
Confidence 9999999988643 111112222 45678889999999999999999999877641000 11
Q ss_pred CCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc----CC-CcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 270 PTAKTYAIMIVALVQNDR-----------------MEECFSLLGHMINS----GC-LPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 270 p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
....++..+...|...|+ +++|...+++..+. +. .....++..+...|...|++++|.
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 235578888899999999 99999999887643 21 122357788889999999999999
Q ss_pred HHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----C-cChhhHHHHHHHHHhcCCchHHH
Q 036198 328 KFLEEMGNKGYP-PD----IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC----W-PSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 328 ~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~-~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
+.+++..+.... ++ ..++..+...|...|++++|...+++..+... . ....++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987653111 11 23788889999999999999999998775321 0 12567888999999999999999
Q ss_pred HHHHHHhHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 398 ETWHEMDKR----GC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 398 ~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
+.+++..+. +. .....++..+...|...|++++|...+++..+.
T Consensus 324 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999987653 11 112347778889999999999999999998765
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=7.2e-11 Score=112.99 Aligned_cols=288 Identities=11% Similarity=-0.025 Sum_probs=202.7
Q ss_pred HHhCCChHHHHHHHHHhhcC---CCCCh--hhHHHH--------------HH-----------HHHHHHHHcCCCCCHHH
Q 036198 187 LCKCGLVDYAETICKRVKNK---VKPNA--NTYNIL--------------GM-----------QTLEEMIQMGHAPDNFT 236 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~---~~p~~--~~~~~l--------------a~-----------~~~~~m~~~g~~p~~~~ 236 (499)
+.+.+++++|..+++++.+. ...|. ..|-.+ +. +.++.+..... +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cchh
Confidence 45689999999999998752 32333 322222 22 33444332111 1111
Q ss_pred ------HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---
Q 036198 237 ------YNTAIDTFCKARMVTEAADLFEFMRTKGSTI-SSP-TAKTYAIMIVALVQNDRMEECFSLLGHMINSG--C--- 303 (499)
Q Consensus 237 ------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~--- 303 (499)
+......+...|++++|+..|++..+..... ..+ ...++..+...|...|++++|...+.+..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1225566788999999999999998752110 011 34678899999999999999999999887531 1
Q ss_pred -CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC
Q 036198 304 -LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GC 373 (499)
Q Consensus 304 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~ 373 (499)
.....+++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112356788889999999999999999887643 111 11247888999999999999999999998762 32
Q ss_pred -CcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCC
Q 036198 374 -WPSVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 374 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p 445 (499)
.....++..+...|...|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 334668899999999999999999999987653 111122335667778888898 77777777665 3333
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 446 P-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 446 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
+ ...+..+...|...|++++|.+.+++..+....
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3 446778889999999999999999998875443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=3.6e-10 Score=104.60 Aligned_cols=219 Identities=10% Similarity=0.022 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH-------hCCCh-------HHHHHHHH
Q 036198 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC-------KCGLV-------DYAETICK 201 (499)
Q Consensus 136 ~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~ 201 (499)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|+
T Consensus 33 ~~a~~~~~~al~~~------------------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~ 88 (308)
T 2ond_A 33 KRVMFAYEQCLLVL------------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 88 (308)
T ss_dssp HHHHHHHHHHHHHH------------------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc------------------------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHH
Confidence 56777777777654 346667777777765 45886 88888888
Q ss_pred HhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHH
Q 036198 202 RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-TYAIMIV 280 (499)
Q Consensus 202 ~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~ll~ 280 (499)
+....+.|+ +...|..++..+.+.|++++|.++|++..+.. +-+.. +|..+..
T Consensus 89 rAl~~~~p~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~ 142 (308)
T 2ond_A 89 RAISTLLKK----------------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMK 142 (308)
T ss_dssp HHHTTTTTT----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS----SSCTHHHHHHHHH
T ss_pred HHHHHhCcc----------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----ccCccHHHHHHHH
Confidence 876532221 55678889999999999999999999998854 22333 7888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC-LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (499)
.+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|.++|+...+... -+...|..++..+.+.|+++
T Consensus 143 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 143 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHH
Confidence 8899999999999999988764 234444443333322 36888888888888776532 26677888888888888888
Q ss_pred HHHHHHHHHHHCC-CCc--ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 360 EALRLYGRMIEVG-CWP--SVQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 360 ~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+|..+|++..+.. ..| ....|..++....+.|+.+.|..+++++.+.
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888753 344 3557777788888888888888888887664
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.8e-10 Score=96.48 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
++..|..+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|...+....... +.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 45667777777777777777777777777764 3456677777777777777777777777776653 334555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+...+...++++.|.+.+......... +...+..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 666677777777777777766654322 45666666677777777777777777766643 1345566666677777777
Q ss_pred chHHHHHHHHHhHC
Q 036198 393 PDGAFETWHEMDKR 406 (499)
Q Consensus 393 ~~~a~~~~~~m~~~ 406 (499)
+++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766653
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.5e-10 Score=96.76 Aligned_cols=170 Identities=13% Similarity=0.067 Sum_probs=105.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
+...|..+...|...|++++|.+.|++..+.... +..++..+...|.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 4455666666666666666666666665554322 455566666666666666666666666655431 23445555556
Q ss_pred HHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036198 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 465 (499)
.+...++++.|.+.+....+.. +-+...+..+...|.+.|++++|.+.+++..+... -+...+..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665542 22455666666677777777777777777666542 356667777777777777777
Q ss_pred HHHHHHHHHhhcCh
Q 036198 466 IHKLSDHMRKFYNP 479 (499)
Q Consensus 466 a~~~~~~m~~~~~~ 479 (499)
|.+.+++..+..|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 77777777666543
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=2.7e-11 Score=111.97 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 254 (499)
.+..++..+...+...|++++|..+|+++.+ +.........+.....+..+...|...|++++|.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALE---------------DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3467899999999999999999999998754 1222211122234667888999999999999999
Q ss_pred HHHHHHHHc------CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CcCHHhHHHHHHHHHhcC
Q 036198 255 DLFEFMRTK------GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------GC-LPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 255 ~~~~~m~~~------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g 321 (499)
..+++..+. +. .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|
T Consensus 90 ~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Confidence 999988764 21 1234667888889999999999999999988764 22 223456777788888889
Q ss_pred CHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNK------GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
++++|.+.+++..+. +..| ...++..+...|...|++++|...++++.+
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988888887653 1122 244677777888888888888888888765
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=6.2e-11 Score=109.52 Aligned_cols=246 Identities=13% Similarity=0.047 Sum_probs=174.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST----ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------ 301 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 301 (499)
.+..++..+...+...|++++|..+|+++.+.... ..+....++..+...|...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34678889999999999999999999999984100 02345677888999999999999999999998764
Q ss_pred CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 036198 302 GC-LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK------GY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-- 371 (499)
Q Consensus 302 ~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 371 (499)
+- +.....+..+...|...|++++|.+.+++..+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 234567888899999999999999999988764 22 223456888889999999999999999998764
Q ss_pred ----CCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-------CCCCCHH-------HHHHHHHHHHhCCCHHHHH
Q 036198 372 ----GCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKR-------GCAQDVD-------TYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 372 ----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~li~~~~~~g~~~~a~ 432 (499)
+..| ...++..+...|...|++++|.+.++++.+. ...+... .+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2123 3457888999999999999999999998752 1112111 1222222333344555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
..++...... +....++..+..+|.+.|++++|.+++++..+..+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6666655432 23466788899999999999999999999887654
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=8.1e-10 Score=105.44 Aligned_cols=301 Identities=10% Similarity=-0.047 Sum_probs=207.4
Q ss_pred CCHHHHHHHHHHH--HhCCChHHHHHHHHHhhcC---C--CCChhhHHHH--------------HH---------HHHHH
Q 036198 175 PEINALNLLLDAL--CKCGLVDYAETICKRVKNK---V--KPNANTYNIL--------------GM---------QTLEE 224 (499)
Q Consensus 175 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~---~--~p~~~~~~~l--------------a~---------~~~~~ 224 (499)
|+..+-+.+-..| .+.+++++|.++++++... . .++...|-.+ +. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4555555555566 7889999999999987642 2 2223333333 22 44444
Q ss_pred HHHcCCCCCH-H---HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036198 225 MIQMGHAPDN-F---TYNTAIDTFCKARMVTEAADLFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298 (499)
Q Consensus 225 m~~~g~~p~~-~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 298 (499)
+.....+.+. . .+......+...|++++|+..|++..+..... ......++..+...|...|+++.|...+.+.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3321111110 0 12233455678999999999999998753210 0112567888899999999999999999988
Q ss_pred HHcC--C---Cc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 299 INSG--C---LP-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYP-PDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 299 ~~~~--~---~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
.+.. . .+ ...+++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7531 1 11 2456788889999999999999999887653 211 1235778888999999999999999999
Q ss_pred HHH-----CCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC----CCCCHHHHHHHHHHHHhCCC---HHHHHHHH
Q 036198 368 MIE-----VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG----CAQDVDTYCVMIDGLFDCSK---VEEACFLL 435 (499)
Q Consensus 368 m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~ 435 (499)
..+ .. +....++..+...|.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 876 33 2336788899999999999999999999887631 12223455666667777888 77777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 436 EEVVNKGLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 436 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
++ .+..|+ ...+..+...|...|++++|.+.+++..+....
T Consensus 327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 65 332222 346667889999999999999999998875443
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=7e-11 Score=116.27 Aligned_cols=215 Identities=12% Similarity=0.022 Sum_probs=145.4
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
++++++.++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|...|++++|.+
T Consensus 84 ~~~al~~l~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA----QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC----chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666555432 34566777777777777777 77777777776653 3346667777777777777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc--------C
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVLCDN---------KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL--------G 391 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~ 391 (499)
.|+...+.. |+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 777776653 4556667777777777 77777777777777653 23456677777777776 7
Q ss_pred CchHHHHHHHHHhHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCA--QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
++++|.+.|++..+.... -+...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777787777777664210 2667777777777788888888888887776652 2556677777777777777777765
Q ss_pred HHHH
Q 036198 470 SDHM 473 (499)
Q Consensus 470 ~~~m 473 (499)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5443
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=1.8e-10 Score=113.34 Aligned_cols=198 Identities=7% Similarity=-0.091 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 232 PDNFTYNTAIDTFCKARMV-TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
.+...+..+..++...|++ ++|++.|++..+.. +.+..+|..+...|...|++++|...|++..+.. |+...+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 173 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSL 173 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHH
Confidence 3788899999999999999 99999999999875 4468899999999999999999999999999874 777888
Q ss_pred HHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCC
Q 036198 311 KEVLEGMCLA---------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN--------KNGDEALRLYGRMIEVGC 373 (499)
Q Consensus 311 ~~ll~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~ 373 (499)
..+...+... |++++|.+.+++..+.... +...|..+..+|... |++++|...|++..+...
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999 9999999999999887533 678899999999998 999999999999998541
Q ss_pred C--cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036198 374 W--PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437 (499)
Q Consensus 374 ~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 437 (499)
. -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+.+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 367899999999999999999999999988753 23566788888888889999988876543
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=4.3e-09 Score=100.13 Aligned_cols=281 Identities=11% Similarity=-0.015 Sum_probs=193.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 259 (499)
+......+...|++++|...+++.....+++... .-...++.+...+...|++++|.+.+++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 78 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFY------------------SRIVATSVLGEVLHCKGELTRSLALMQQ 78 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh------------------HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556678999999999998876532111000 0122566777888899999999999998
Q ss_pred HHHcCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--c-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 260 MRTKGSTISSP--TAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL--P-DVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 260 m~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
..........+ ...++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+
T Consensus 79 al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77632100011 1234567778889999999999999988753 221 2 2345666788899999999999999
Q ss_pred HHHHhCCCC----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh-hhHH-----HHHHHHHhcCCchHHHHHH
Q 036198 331 EEMGNKGYP----PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV-QTYN-----MLISMYFELGEPDGAFETW 400 (499)
Q Consensus 331 ~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~ 400 (499)
++....... ....++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+
T Consensus 159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 987654221 12346777888889999999999999988753211111 1121 2334477899999999999
Q ss_pred HHHhHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 401 HEMDKRGCAQ---DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLPY-RKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 401 ~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
+...+....+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.+.+++
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9887543221 1335667778889999999999999887643 322222 3566677888999999999999998
Q ss_pred HHhhcC
Q 036198 473 MRKFYN 478 (499)
Q Consensus 473 m~~~~~ 478 (499)
..+...
T Consensus 319 al~~~~ 324 (373)
T 1hz4_A 319 ALKLAN 324 (373)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 876543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.2e-09 Score=104.47 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=176.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
.....+...|++++|.+.|++...... ..+-.+ ...++..+...|...|++++|...+++.
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLI------------------FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGG------------------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHh------------------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 366677889999999999999765200 001111 3467889999999999999999999988
Q ss_pred HHcCCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c----CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 261 RTKGSTIS---SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-P----DVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 261 ~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~----~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
.+...... .....+++.+...|...|++++|...|++..+.... + ...++..+...|...|++++|.+.+++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76431100 112457888899999999999999999988754111 1 124788899999999999999999998
Q ss_pred HHh-----CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcChhhHHHHHHHHHhcCC---chHHHHHH
Q 036198 333 MGN-----KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GCWPSVQTYNMLISMYFELGE---PDGAFETW 400 (499)
Q Consensus 333 m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~ 400 (499)
..+ ...+....++..+...+.+.|++++|...+++..+. +-......+..+...|...|+ .++|..++
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 776 321334677889999999999999999999987753 111223345777888888888 66777777
Q ss_pred HHHhHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 401 HEMDKRGCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 401 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
+.. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 330 ~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 330 ESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665 22333 34677788899999999999999998875
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=1.2e-09 Score=106.63 Aligned_cols=336 Identities=11% Similarity=-0.005 Sum_probs=224.3
Q ss_pred HHHHHhcchhhhhhHHHHHHHHHHHHHcCCCccc---------HHHH---HHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 036198 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP---------VDVL---LMILKQYTEKIKVKTQPEINALNLLLDALC 188 (499)
Q Consensus 121 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------~~~~---~~~l~~~~~~~~~~~~~~~~~~~~li~~~~ 188 (499)
+...+. +.|++++|.++|++..+.+....- .... ...+..|.+.. ..+...+..+...+.
T Consensus 9 la~~~~----~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~----~~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEAL----KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAA----DTSPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 344555 889999999999998877632110 0111 22333333222 225566777777566
Q ss_pred hCC-----ChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036198 189 KCG-----LVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248 (499)
Q Consensus 189 ~~g-----~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 248 (499)
..| ++++|...|++..+...++ .+..+ +.+.+......|. ...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 655 7789999999877643333 33333 4445555554443 345556777777777
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc----C
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND---RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA----G 321 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g 321 (499)
.++++......+.+.- ...+...+..+...|...| +.++|+..|+...+.| .++...+..+...|... +
T Consensus 156 ~~~~~~~~a~~~~~~a---~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 156 TYDQHLDDVERICKAA---LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp CGGGGHHHHHHHHHHH---TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred CcccCHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 6555554433333222 1122338888888999999 8999999999999987 45555556677777555 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC-----Cc
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKV-L--CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-----EP 393 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~ 393 (499)
++++|.+.|+... .| +...+..+... + ...+++++|...|++..+.| +...+..|-..|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 33 55666666666 4 46899999999999999877 5667777777777 55 99
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV----IGDLGA 465 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 465 (499)
++|.+.|++.. . -+...+..+-..|.. ..+.++|..+|++..+.|. ......+...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3 366677777777766 4499999999999998874 3455566666654 468999
Q ss_pred HHHHHHHHHhhcChhHHHHHHHH
Q 036198 466 IHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
|...++...+.+.+.-...+...
T Consensus 377 A~~~~~~A~~~g~~~a~~~l~~l 399 (452)
T 3e4b_A 377 AYVFSQLAKAQDTPEANDLATQL 399 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998877655444443
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=5.1e-08 Score=98.87 Aligned_cols=224 Identities=11% Similarity=0.053 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF-SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
+.+..+|++..... +-....|-.....+...|+.++|. ++|++.... ++.+...+-..+...-+.|+++.|.++
T Consensus 326 ~Rv~~~Ye~aL~~~----p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV----CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44667888888764 557888999999999999999996 999999875 355666677788888899999999999
Q ss_pred HHHHHhCC---------CCCC------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 330 LEEMGNKG---------YPPD------------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 330 ~~~m~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
|+.+.... -.|+ ...|...+....+.|+.+.|..+|....+.........|......-.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99987641 0132 34688888888889999999999999987611122334433332223
Q ss_pred hc-CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 036198 389 EL-GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL--PYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 389 ~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~ 465 (499)
+. ++.+.|.++|+...+. .+-+...+...+......|+.+.|..+|++.......+ ....|..+++--.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33 4589999999998876 34466667788888888999999999999998775422 34578888888888999999
Q ss_pred HHHHHHHHHhhcChh
Q 036198 466 IHKLSDHMRKFYNPV 480 (499)
Q Consensus 466 a~~~~~~m~~~~~~~ 480 (499)
+.++.+++.+.+|..
T Consensus 560 ~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998875
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2.1e-09 Score=90.74 Aligned_cols=164 Identities=13% Similarity=0.016 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
..|..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 65 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-----------------------DAFDVDVALHLGIAYVKTGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-----------------------TSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CccChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556666666677777777776665442 1124555666666667777777777777
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036198 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 258 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 337 (499)
+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++...+..
T Consensus 66 ~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 66 ERSLADA----PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 7666653 3355666666666666677777777776666543 3345556666666666666666666666665543
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
. .+...+..+...+...|++++|...+++..+
T Consensus 141 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 141 P-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2455566666666666666666666666554
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=2.8e-10 Score=103.41 Aligned_cols=167 Identities=16% Similarity=0.067 Sum_probs=123.4
Q ss_pred HHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---
Q 036198 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK--- 263 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 263 (499)
....|++++|...|++..+ ++........+....++..+...|...|++++|+..|++..+.
T Consensus 11 ~~~~~~~~~A~~~~~~al~---------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALE---------------DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75 (283)
T ss_dssp --CCSCSSSHHHHHHHHHH---------------HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3456888888888887543 4555444333345678899999999999999999999988765
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 264 ---GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------G-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 264 ---~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
+. .+....++..+...|...|++++|...+.+..+. . .+....++..+...|...|++++|.+.+++.
T Consensus 76 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 76 TLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HTCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCc--chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 1234668888999999999999999999988764 1 1234566778888888999999999988887
Q ss_pred HhC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 334 GNK------GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 334 ~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+. +..| ...++..+...|...|++++|...+++..+
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 654 1122 345677788888888888888888888765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=1.1e-09 Score=92.45 Aligned_cols=167 Identities=11% Similarity=0.032 Sum_probs=105.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
.+..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344455555666666666666665554422 245556666666666666666666666665542 234556666666666
Q ss_pred hcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777777776665542 2355666667777777777777777777776654 2356677777777777788887777
Q ss_pred HHHHHHhhcCh
Q 036198 469 LSDHMRKFYNP 479 (499)
Q Consensus 469 ~~~~m~~~~~~ 479 (499)
.+++..+..+.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 77777665433
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=2.9e-08 Score=94.55 Aligned_cols=236 Identities=6% Similarity=-0.063 Sum_probs=172.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCC--CCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKV--KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 259 (499)
.....+...|++++|...|++..... .++. .....++..+...|...|+++.|...+++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-------------------IEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-------------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34455678899999999999876520 0110 01355788899999999999999999998
Q ss_pred HHHcCCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 260 MRTKGSTISS---PTAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL-PDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 260 m~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
..+....... ....+++.+...|...|++++|...|++..+. +.. ....++..+...|...|++++|.+.++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8764211011 12567888999999999999999999988753 111 123567788899999999999999999
Q ss_pred HHHh-----CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CcChhhHHHHHHHHHhcCC---chHHHHH
Q 036198 332 EMGN-----KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC----WPSVQTYNMLISMYFELGE---PDGAFET 399 (499)
Q Consensus 332 ~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~ 399 (499)
+..+ .... ...++..+...+.+.|++++|...+++..+... ......+..+-..|...++ +.+|...
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8876 4322 367888899999999999999999999886421 1123455666666777777 6677776
Q ss_pred HHHHhHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 400 WHEMDKRGCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 400 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
++. .+..|+ ...+..+...|...|++++|...+++..+
T Consensus 326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665 322232 34566788899999999999999998764
No 79
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.19 E-value=2.2e-08 Score=97.83 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCc
Q 036198 233 DNFTYNTAIDTFCKAR---MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN----DRMEECFSLLGHMINSGCLP 305 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~ 305 (499)
++..+..+...|.+.| +.++|++.|+...+.| .++...+..+...|... +++++|...|+... . -
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g 246 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---G 246 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---G
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---C
Confidence 3338888999999999 9999999999999987 46677667777777655 79999999999987 4 3
Q ss_pred CHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCcCh
Q 036198 306 DVSTYKEVLEG-M--CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK-----NGDEALRLYGRMIEVGCWPSV 377 (499)
Q Consensus 306 ~~~~~~~ll~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~ 377 (499)
+...+..+-.. + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|...|++.. .| +.
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~ 318 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EV 318 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CH
Confidence 55566666665 3 46899999999999999886 6677778887776 55 9999999999987 43 56
Q ss_pred hhHHHHHHHHHh----cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 036198 378 QTYNMLISMYFE----LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLKLPYRK 449 (499)
Q Consensus 378 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 449 (499)
..+..|-..|.. ..+.++|...|+...+.|. ......+-..|.. ..+.++|..+++...+.|.. +...
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~ 394 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EAND 394 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHH
Confidence 677777777766 3489999999999988764 3345556666653 46899999999999998843 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
....+......++.++|.++.++.++..+
T Consensus 395 ~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 395 LATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 33333333445567778888777766543
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1.3e-08 Score=96.70 Aligned_cols=274 Identities=10% Similarity=-0.024 Sum_probs=189.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|++++|...+++....... .+.. .-..+++.+...+...|++++|.+.+++....
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~-~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 82 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPP-GWFY------------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQM---- 82 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCT-TCHH------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred HCCCHHHHHHHHHHHHHcCCC-Cchh------------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----
Confidence 789999999999998765410 0000 01125677778888999999999999886531
Q ss_pred hhhHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CC--C-CHHHHHHHHHHHHHc
Q 036198 211 ANTYNILGMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI-SS--P-TAKTYAIMIVALVQN 285 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~--p-~~~~~~~ll~~~~~~ 285 (499)
..+.|.. ....++..+...+...|++++|.+.+++..+..... .. | ....+..+...+...
T Consensus 83 --------------~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 83 --------------ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp --------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred --------------HHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 1112211 113346677888999999999999999887632100 11 2 245667788889999
Q ss_pred CCHHHHHHHHHHHHHcCCC----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHH-----HHHHHHHHc
Q 036198 286 DRMEECFSLLGHMINSGCL----PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI-VTYN-----CFLKVLCDN 355 (499)
Q Consensus 286 ~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~ 355 (499)
|++++|...+++..+.... ....++..+...+...|++++|...+++.......++. ..+. ..+..+...
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 9999999999998764321 12356777888899999999999999987653111111 1222 233447799
Q ss_pred CCHHHHHHHHHHHHHCCCCc---ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCCH-HHHHHHHHHHHhCCC
Q 036198 356 KNGDEALRLYGRMIEVGCWP---SVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQDV-DTYCVMIDGLFDCSK 427 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~ 427 (499)
|++++|...+++.......+ ....+..+...+...|++++|...++...+. |..++. ..+..+..++...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999999887543211 1235677788899999999999999987542 322233 256667778889999
Q ss_pred HHHHHHHHHHHHHC
Q 036198 428 VEEACFLLEEVVNK 441 (499)
Q Consensus 428 ~~~a~~~~~~m~~~ 441 (499)
.++|...+++....
T Consensus 309 ~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 309 KSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=3.2e-09 Score=108.92 Aligned_cols=166 Identities=12% Similarity=0.014 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.. +-+...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 46789999999999999999999999999875 3468899999999999999999999999999874 445788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+..+|...|++++|.+.|++..+.+.. +...|+.+..+|.+.|++++|++.|++..+... -+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 999999999999999999998886433 678999999999999999999999999988642 346789999999999999
Q ss_pred chHHHHHHHHHhH
Q 036198 393 PDGAFETWHEMDK 405 (499)
Q Consensus 393 ~~~a~~~~~~m~~ 405 (499)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=3.2e-09 Score=108.92 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
..+|+.+...+.+.|++++|.+.|++..+.. +-+...+..+..+|.+.|++++|.+.|++..+.+.. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556666666666666666666666665542 223455555555666666666666666555554321 34455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
|.+.|++++|.+.|++..+... -+...|+.+..+|...|++++|++.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 5555555555555555554321 123455555555555555555555555554431 11334455555555555555555
Q ss_pred HHHHHHHH
Q 036198 432 CFLLEEVV 439 (499)
Q Consensus 432 ~~~~~~m~ 439 (499)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=9.2e-10 Score=99.90 Aligned_cols=231 Identities=16% Similarity=0.073 Sum_probs=158.3
Q ss_pred HhcCCHhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CcCHHhHHHH
Q 036198 245 CKARMVTEAADLFEFMRTKGST----ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------GC-LPDVSTYKEV 313 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 313 (499)
...|++++|+..|++..+.-.. ..+....++..+...|...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777776652100 02334678889999999999999999999998864 22 2345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCc-Chhh
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK------G-YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV------GCWP-SVQT 379 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~ 379 (499)
...|...|++++|.+.+++..+. . .+....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988664 1 1224567888999999999999999999998764 1123 3567
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHC-------CCCCCH-HHHHHHHHHHHhCCC------HHHHHHHHHHHHHCCCCC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKR-------GCAQDV-DTYCVMIDGLFDCSK------VEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p 445 (499)
+..+...|...|++++|.+.+++..+. ...+.. ..|..+...+...+. +.++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 889999999999999999999988653 112222 233333333333222 2222222221111 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 446 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
...++..+..+|...|++++|.+++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788889999999999999999988764
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=1.7e-08 Score=88.61 Aligned_cols=206 Identities=11% Similarity=-0.020 Sum_probs=159.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
..+...+......+...|++++|...|++..+..-.++...+..+..++...|++++|.+.++...+.... +...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45678889999999999999999999999998764367778877999999999999999999999887533 66788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCh-------hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC---HHHHHHH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSV-------QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD---VDTYCVM 418 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l 418 (499)
...+...|++++|...+++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 9999999999999999999987542 233 45778888889999999999999999875 454 4566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
...|...| ..+++++...+. .+...|.... ....|.+++|...+++..+..|....-...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 66765443 444555555542 3444554443 345677899999999999988776544333
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=2.9e-08 Score=89.60 Aligned_cols=221 Identities=10% Similarity=0.045 Sum_probs=154.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
.-+.++|...|+++.. .. ..|....+..+...+ ..+ |...|+++.+.+ .++..++..+..++
T Consensus 49 ~~~~Rs~iAlg~~~~~---------~~---~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~ 110 (310)
T 3mv2_B 49 FYKAKTLLALGQYQSQ---------DP---TSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQ 110 (310)
T ss_dssp HHHHHHHHHTTCCCCC---------CS---SSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccC---------CC---CCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3345777777776631 11 345544444444333 322 677888877665 45666666788889
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-----ChhhHHHHHHHHH--h
Q 036198 318 CLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-----SVQTYNMLISMYF--E 389 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~--~ 389 (499)
...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...|..++. .
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHH
Confidence 999999999999998876653 225677888889999999999999999999874 35 3566666666633 3
Q ss_pred cC--CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CC----CCCHHHHHHHHHHHH
Q 036198 390 LG--EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK-----GL----KLPYRKFDSYLMQLS 458 (499)
Q Consensus 390 ~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~----~p~~~~~~~ll~~~~ 458 (499)
.| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. .. +-++.++..++....
T Consensus 189 ~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLAL 266 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH
Confidence 34 899999999998765 455334445555788899999999999876643 11 235667766666666
Q ss_pred hcCCHHHHHHHHHHHHhhcChhHH
Q 036198 459 VIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
..|+ +|.++++++.+..|..+.
T Consensus 267 ~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 267 MQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HhCh--HHHHHHHHHHHhCCCChH
Confidence 6776 888999999998876554
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=4.6e-08 Score=85.83 Aligned_cols=196 Identities=12% Similarity=0.011 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
.|+..+......+...|++++|+..|++..+.. .+++...+..+..++...|++++|...|++..+.. +.+...+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 80 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT---NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYI 80 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc---CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHH
Confidence 467889999999999999999999999999986 23778888889999999999999999999999874 33567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---hhhHH
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI-------VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS---VQTYN 381 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~ 381 (499)
.+...|...|++++|.+.+++..+.... +. ..|..+...+...|++++|...|++..+.. |+ ...+.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~ 157 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHH
Confidence 8999999999999999999998876432 34 457888888999999999999999998853 54 46777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.+..+|...| ...++.+...+ ..+...|..... ...+.+++|...+++..+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 7777776544 44455555543 223444544432 24566899999999998875
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.04 E-value=1.2e-06 Score=88.86 Aligned_cols=170 Identities=11% Similarity=0.015 Sum_probs=113.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------Cc
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAY-KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC---------WP 375 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~ 375 (499)
+...|-.....+...|+.++|. ++|+..... .+.+...|...+...-+.|+++.|.++|+.+.+... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3344444445555677777785 888887764 334555667777777888888889888888775310 13
Q ss_pred C------------hhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHC
Q 036198 376 S------------VQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDC-SKVEEACFLLEEVVNK 441 (499)
Q Consensus 376 ~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 441 (499)
+ ..+|...+....+.|+.+.|..+|....+. +. +....|...+..-.+. ++.+.|..+|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235777777777788888899999888765 21 1222333222222233 4588888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 442 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+-+...+..+++-....|+.+.|..+|++..+..+
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 333566667777777788889999999988887655
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=3.8e-08 Score=77.84 Aligned_cols=129 Identities=11% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 45566667777777777777777776654 3356666666777777777777777777766553 334555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+...|++++|.+.++.+.+... .+...+..+...+.+.|++++|...++++.+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66677777777777766655432 2455566666666666666666666666654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=2.3e-08 Score=91.55 Aligned_cols=168 Identities=14% Similarity=0.024 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCc-C----h
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDN-KNGDEALRLYGRMIEVGCWP-S----V 377 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~-~----~ 377 (499)
+|+.+..+|.+.|++++|...+++..+. |-.. -..+++.+...|... |++++|...|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444444444455555554444443321 1000 023445555555554 66666666555554321000 0 2
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC---H
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV------DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LP---Y 447 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~ 447 (499)
.++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...+++..+.... ++ .
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34555555566666666666666655543221111 13444455555566666666666655432110 00 1
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHhh
Q 036198 448 RKFDSYLMQLS--VIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 448 ~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 476 (499)
..+..++.+|. ..+++++|.+.++++.+.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 12333344443 234455555555554443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=9.6e-08 Score=87.38 Aligned_cols=169 Identities=10% Similarity=-0.051 Sum_probs=99.6
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD-NFTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
...|...|++++|.+.|.+..+ +. .+.|.+++ ..+|+.+..+|.+.|++++|+..|++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~---------------~~---~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAAD---------------YQ---KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHH---------------HH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---------------HH---HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3457778888888888887643 11 12232222 46788888888888888888888887765
Q ss_pred cCCCCCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCc-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 263 KGSTISSP--TAKTYAIMIVALVQN-DRMEECFSLLGHMINSGCLP-D----VSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 263 ~~~~~~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
.......+ -..+++.+...|... |++++|...|++..+..... + ..++..+...+.+.|++++|...|++..
T Consensus 106 l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 185 (292)
T 1qqe_A 106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 32100011 134566666677774 77777777777665431000 0 2345556666666666666666666666
Q ss_pred hCCCCCCHh------hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 335 NKGYPPDIV------TYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 335 ~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
+........ .|..+..++...|++++|...|++..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 186 KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 543221111 344555556666666666666666554
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=6e-08 Score=76.66 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 036198 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424 (499)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 424 (499)
|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44555555666666666666666555331 234455556666666666666666666665442 2244556666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 425 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.|++++|.++++++.+... .+...+..+...+...|++++|.+.++++.+..+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 7777777777766665542 2455666666777777777777777776665543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=1.3e-07 Score=84.90 Aligned_cols=193 Identities=7% Similarity=-0.047 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHh
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-P-DIV 343 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~ 343 (499)
+.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456777777778888888888888888887753 222 556777778888888888888888887775321 1 234
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCcCh-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 344 TYNCFLKVLCD--------NKNGDEALRLYGRMIEVGCWPSV-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 344 ~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
.+..+..++.. .|++++|...|+++.+.. |+. .....+.. +..+... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 56666677777 788888888888877643 332 22211111 0010000 0112
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcChhHH
Q 036198 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKL--PYRKFDSYLMQLSVI----------GDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+..+...|...|++++|...++++.+..... ....+..+..+|... |++++|...++++.+.+|....
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 4556677788888888888888887664221 244666777777765 7888888888888888776543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=1.2e-07 Score=85.07 Aligned_cols=190 Identities=12% Similarity=-0.038 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHHh
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPDVST 309 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 309 (499)
.+...+..+...+.+.|++++|+..|+.+.+.... .+.....+..+..++...|++++|...|+...+..- +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 36677888889999999999999999999987521 011167888999999999999999999999998631 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHH
Q 036198 310 YKEVLEGMCL--------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381 (499)
Q Consensus 310 ~~~ll~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 381 (499)
+..+..++.. .|++++|...|++..+.... +......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 6777788888 99999999999998876322 2223322110 0000000 001133
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCC-C-CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHC
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCA-Q-DVDTYCVMIDGLFDC----------SKVEEACFLLEEVVNK 441 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 441 (499)
.+...|.+.|++++|...|+.+.+.... + ....+..+..+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4445555566666666666655543111 0 123444444555433 5666666666666554
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.85 E-value=2.2e-07 Score=80.29 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+......+...|++++|+..|++..+.. +-+...|... .... ...........+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg 61 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN----IDRTEMYYWT-----NVDK--------------NSEISSKLATELA 61 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHh-----hhcc--------------hhhhhHHHHHHHH
Confidence 334445566778888888888888887754 1123333330 0000 0000111222345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC--
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE-- 392 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-- 392 (499)
.+|.+.|++++|...|++..+.... +...+..+...+...|++++|...|++..+... .+..++..+..+|...|+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHH
Confidence 5555556666666666555554322 445555555556666666666666666555331 234455555555443332
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.+.+...++.... ..|....+.....++...|++++|...|++..+.
T Consensus 140 ~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2233333333321 1111122222333344456666666666665543
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=4.2e-07 Score=78.72 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC----CHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG----KVEEAYK 328 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~ 328 (499)
|++.|++..+.| +..++..+...|...+++++|...|++..+.| +...+..|-..|.. + ++++|.+
T Consensus 5 A~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 5 PGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp TTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 445555555544 44555555555555556666666665555543 33444444444444 3 5555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHh----cCCchHHHHH
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFE----LGEPDGAFET 399 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~ 399 (499)
.|+...+.| +...+..|...|.. .+++++|...|++..+.|.. .+...+..|-..|.. .++.++|...
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 555554443 33444444444443 44555555555555444311 013344444444444 3444444444
Q ss_pred HHHHhH
Q 036198 400 WHEMDK 405 (499)
Q Consensus 400 ~~~m~~ 405 (499)
|++..+
T Consensus 152 ~~~A~~ 157 (212)
T 3rjv_A 152 FKGSSS 157 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=3.6e-06 Score=76.59 Aligned_cols=236 Identities=8% Similarity=0.016 Sum_probs=179.9
Q ss_pred HHHHHhcCCH-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 241 IDTFCKARMV-TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND--RMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 241 i~~~~~~g~~-~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
+.+..+.|.. ++|+++++.+.... +-+..+|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHH
Confidence 3344455554 68999999999976 446778888888888888 9999999999999874 33445555433333
Q ss_pred ----Hhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 318 ----CLA---GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD--EALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 318 ----~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
... +++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+.+... -|...|+.-.....
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 444 7899999999999987654 7888888888888889888 99999999998764 46778877666666
Q ss_pred hcCC------chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHh
Q 036198 389 ELGE------PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE-EACFLLEEVVNKG--LKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 389 ~~~~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~ 459 (499)
+.+. ++++++.++.+.... +-|...|+-+-..+.+.|+.. ++..+..++.+.+ -..+...+..+..+|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 6666 888999999888764 347888888888888888744 4556666665433 13477888999999999
Q ss_pred cCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 460 IGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.|+.++|.++++.+.+.+.|.-.++
T Consensus 271 ~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 271 QKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred cCCHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999998666654443
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.8e-07 Score=84.47 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 276 AIMIVALVQNDRMEECFSLLGHMINSGC-LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444455555444444433321 11333444444444555555555555544443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=1.2e-06 Score=75.87 Aligned_cols=186 Identities=10% Similarity=-0.045 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----CHHHHHHH
Q 036198 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK----NGDEALRL 364 (499)
Q Consensus 289 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~ 364 (499)
.+|++.|.+..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..+-..|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35777888888775 67788888899999999999999999998876 56777788888877 6 89999999
Q ss_pred HHHHHHCCCCcChhhHHHHHHHHHh----cCCchHHHHHHHHHhHCCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHH
Q 036198 365 YGRMIEVGCWPSVQTYNMLISMYFE----LGEPDGAFETWHEMDKRGCA-QDVDTYCVMIDGLFD----CSKVEEACFLL 435 (499)
Q Consensus 365 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~ 435 (499)
|++..+.| +...+..|-..|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .++.++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998865 56677778888877 78999999999999887532 126778888888887 88999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 436 EEVVNKGLKLPYRKFDSYLMQLSVI-G-----DLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 436 ~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
++..+.+ .+...+..+...|... | +.++|.+.+++..+...+.-...+.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998872 3455677777777653 3 8999999999999987776555444
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.3e-07 Score=97.25 Aligned_cols=172 Identities=9% Similarity=-0.092 Sum_probs=84.3
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 283 VQNDRMEECFSLLGHMI--------NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 283 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|.+.|++..+.+.. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 44555555555555554 221 223344555555555555555555555555543221 34455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 036198 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 434 (499)
.|++++|...|++..+... -+...+..+..+|.+.|++++ .+.|++..+.. +-+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555554321 133445555555555555555 55555554432 11344555555555555555555555
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 036198 435 LEEVVNKGLKLP-YRKFDSYLMQLSVIG 461 (499)
Q Consensus 435 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g 461 (499)
+++..+.+ |+ ...+..+..++...|
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccC
Confidence 55554432 22 334444444444433
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=8.7e-07 Score=77.48 Aligned_cols=186 Identities=10% Similarity=-0.003 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----H
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV----S 308 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~ 308 (499)
+...+..+...+.+.|++++|+..|+++.+.... .+.....+..+..++.+.|++++|...|+++.+.. |+. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHH
Confidence 4455667778889999999999999999886521 11124678888899999999999999999998763 332 1
Q ss_pred hHHHHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 309 TYKEVLEGMCL------------------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 309 ~~~~ll~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+..+..++.. .|++++|...|+.+.+.... +...+.+.... ..+...+.
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~- 147 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH-
Confidence 34334444443 45677777777777665311 22222111100 00000000
Q ss_pred CCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 371 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.....+...|.+.|++++|...|+.+.+. .|+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01134566778888899998888888765 233 2467778888888899999988888887765
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=4.7e-07 Score=78.14 Aligned_cols=188 Identities=7% Similarity=-0.016 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
...+-.....+...|++++|...|++..+..|.+...|... -..............+..+|.+.|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT-------NVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH-------HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh-------hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445556678899999999999998765211111111000 00000000111122377778888888888888
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 036198 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK--VEEAYKFLEEMG 334 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~ 334 (499)
|++..+.. +-+...+..+...+...|++++|...|++..+.. +.+...+..+...|...|+ .+.+...+....
T Consensus 77 ~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 77 YKELLQKA----PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 88888765 3467778888888888888888888888887764 3456667777766655543 334444444443
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 380 (499)
. ..|....+.....++...|++++|...|++..+. .|+....
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 2 1222223333444555667777888888777763 3554433
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=4.9e-07 Score=79.10 Aligned_cols=190 Identities=6% Similarity=-0.057 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-P-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--VTYN 346 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 346 (499)
+...+..+...+...|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+.+.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888899999999999998875311 1 1356777888899999999999999998775432111 1344
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCcChh-hHHHHHHHHHhcCCchHHHHHHHHHhHCC
Q 036198 347 CFLKVLCD------------------NKNGDEALRLYGRMIEVGCWPSVQ-TYNMLISMYFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 347 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 407 (499)
.+..++.. .|++++|...|+++.+.. |+.. .+.+.... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 44444443 356666666666666542 3322 22111100 00000100
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.....+...|.+.|++++|...++++.+.....+ ...+..+..+|.+.|+.++|.+.++.+...++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0123456678899999999999999998753211 2568889999999999999999999998877654
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=5.1e-07 Score=82.29 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...+++.... .|+....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~ 187 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQ 187 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHH
Confidence 3355667777788888889999999888888875 446778888888888888898888888888765 3444333
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHH
Q 036198 311 KEV-LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYF 388 (499)
Q Consensus 311 ~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~ 388 (499)
... ...+...++.++|.+.+++...... .+...+..+...+...|++++|...|.++.+.... .+...+..+...+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 222 2235666777778888887776643 36677888888888888888888888888875422 12567788888888
Q ss_pred hcCCchHHHHHHHHHh
Q 036198 389 ELGEPDGAFETWHEMD 404 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~ 404 (499)
..|+.++|...+++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888888887777643
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=2.2e-06 Score=78.27 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=56.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC----HHhHH
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PD----VSTYK 311 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~ 311 (499)
+..+...|++++|..++++..+... ..|+. ..+..+...+...+++++|...|++..+.... ++ ..+++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4455556666666666666555321 11221 11222333444445555555555555542111 11 11344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNK-----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.+...|...|++++|.+.+++..+. +..+ ...+|..+...|.+.|++++|...+++..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555555555544420 1111 11234444444555555555555544443
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=1.7e-07 Score=96.40 Aligned_cols=173 Identities=13% Similarity=0.012 Sum_probs=143.1
Q ss_pred HhcCCHhHHHHHHHHHH--------HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 245 CKARMVTEAADLFEFMR--------TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~--------~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF----SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHH
Confidence 77899999999999998 432 4567889999999999999999999999999864 4467888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
+...|++++|.+.|++..+.... +...|..+..++.+.|++++ .+.|++..+.+. .+...|..+..++.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887533 67788899999999999999 999999988652 3567889999999999999999
Q ss_pred HHHHHHHhHCCCCCC-HHHHHHHHHHHHhCCC
Q 036198 397 FETWHEMDKRGCAQD-VDTYCVMIDGLFDCSK 427 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 427 (499)
.+.|++..+. .|+ ...+..+..++...++
T Consensus 554 ~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999998775 454 4566677777766554
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=3.7e-07 Score=92.05 Aligned_cols=155 Identities=8% Similarity=-0.038 Sum_probs=114.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 036198 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364 (499)
Q Consensus 285 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 364 (499)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887663 345778888899999999999999999998887433 677888899999999999999999
Q ss_pred HHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHC
Q 036198 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNK 441 (499)
Q Consensus 365 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 441 (499)
+++..+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988764 2356788889999999999999999999987753 23567888888888888 9999999999999887
Q ss_pred CC
Q 036198 442 GL 443 (499)
Q Consensus 442 ~~ 443 (499)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=2.7e-07 Score=77.26 Aligned_cols=161 Identities=11% Similarity=0.043 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. |+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL----QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH----HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 4455666777788888888887766653 3456777777777778888888888777776542 333322221111
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCch
Q 036198 317 -MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 317 -~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~ 394 (499)
+...++...|...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 11212223356666666554322 45666667777777777777777777776654222 2446666777777777777
Q ss_pred HHHHHHHHHh
Q 036198 395 GAFETWHEMD 404 (499)
Q Consensus 395 ~a~~~~~~m~ 404 (499)
+|...|++..
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777766543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=3.5e-07 Score=76.58 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhc
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFEL 390 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~ 390 (499)
.....+...|++++|...++...+... -+...+..+...+...|++++|...+++..+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 344455556666666666655444321 134555555566666666666666666554432 222222211111 1122
Q ss_pred CCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL-PYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
+...+|...++...+. .| +...+..+...+...|++++|...++++.+....+ +...+..+..++...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2333456666666553 23 45666677777777777777777777777665332 24566677777777777777777
Q ss_pred HHHHHH
Q 036198 469 LSDHMR 474 (499)
Q Consensus 469 ~~~~m~ 474 (499)
.+++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=5.2e-06 Score=75.80 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=121.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC----hhhHH
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDI----VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PS----VQTYN 381 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~ 381 (499)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999988876422 2221 13334666666778999999999998874322 22 23688
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhH----C-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 036198 382 MLISMYFELGEPDGAFETWHEMDK----R-GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLP-YRKF 450 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~ 450 (499)
.+..+|...|++++|...+++..+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999988763 1 11222 237778888999999999999999887642 32222 6688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhhcC
Q 036198 451 DSYLMQLSVIGD-LGAIHKLSDHMRKFYN 478 (499)
Q Consensus 451 ~~ll~~~~~~g~-~~~a~~~~~~m~~~~~ 478 (499)
..+..+|.+.|+ +++|.+.+++..+.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 888999999994 6999999988876543
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=1e-06 Score=80.26 Aligned_cols=165 Identities=9% Similarity=0.013 Sum_probs=106.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHH-HHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN-MLI 384 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li 384 (499)
+...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3445555666677777777777777776665322 45666677777777777777777777765542 4433222 222
Q ss_pred HHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCH
Q 036198 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~ 463 (499)
..+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++...... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23555666777777777766542 235666777777777778888888887777766422 1255677777777777877
Q ss_pred HHHHHHHHHHH
Q 036198 464 GAIHKLSDHMR 474 (499)
Q Consensus 464 ~~a~~~~~~m~ 474 (499)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777666543
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=2.7e-05 Score=70.87 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=173.5
Q ss_pred HhCCC-hHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHc
Q 036198 188 CKCGL-VDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKAR--MVTEAADLFEFMRTK 263 (499)
Q Consensus 188 ~~~g~-~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 263 (499)
.+.|. .++|+++++.+.. +.| +...|+.--.++...| ++++++++++.+...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~------------------------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~ 98 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN------------------------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD 98 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH------------------------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 34444 4688888888765 223 4566788888888888 999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH--HHHHHHHHHH
Q 036198 264 GSTISSPTAKTYAIMIVAL----VQN---DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE--EAYKFLEEMG 334 (499)
Q Consensus 264 ~~~~~~p~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~ 334 (499)
. +-+..+|+.--..+ ... +++++++.+++.+.+.. +-+..+|+--.-.+.+.|.++ ++++.++.+.
T Consensus 99 n----Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 99 N----EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp C----TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred C----cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 6 34556666655555 455 78999999999999874 557778877777778888888 9999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH-HHHHHHHHhHCC
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKN------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG-AFETWHEMDKRG 407 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~ 407 (499)
+.+.. |...|+.-...+.+.+. ++++++.+++++.... -|...|+.+-..+.+.|+... +..+...+.+.+
T Consensus 174 ~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 174 DTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 88665 77888877777777776 8899999999988653 578888888888888887444 566777765532
Q ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 408 --CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 408 --~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
-..+...+..+...|.+.|+.++|.++++.+.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 1347788999999999999999999999999864
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=8.4e-07 Score=89.42 Aligned_cols=134 Identities=11% Similarity=-0.091 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 96 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALW 96 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 35555666666666666666666666665543 2345556666666666666666666666665543 234455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN---KNGDEALRLYGRMIEVG 372 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 372 (499)
+..+|.+.|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++..+.+
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666666666666666666555432 1345555556666666 66666666666655543
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=9.8e-07 Score=81.26 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=147.8
Q ss_pred cCCHhHHHHHHHHHHHcCCC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHHhHHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGST---ISSPT----AKTYAIMIVALVQNDRMEECFSLLGHMINS----GCLP-DVSTYKEVL 314 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll 314 (499)
.|++++|.+++++..+.... ...++ ...|......|...|++++|...|.+..+. +-.. -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777766542110 01233 235666677888899999999999887653 1111 135788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-ChhhHHHHH
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWP-SVQTYNMLI 384 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~li 384 (499)
..|...|++++|...|++..+. |-.. -..++..+...|.. |++++|...|++..+.. ... ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999999999999876543 2111 13567778888888 99999999999877531 111 145788889
Q ss_pred HHHHhcCCchHHHHHHHHHhHC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHH
Q 036198 385 SMYFELGEPDGAFETWHEMDKR----GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL-P---YRKFDSYLM 455 (499)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~---~~~~~~ll~ 455 (499)
..|...|++++|...|++..+. +..+. ...+..+..++...|++++|...+++.. ..... + ......++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987653 22121 2256666777778899999999999988 43111 1 123445556
Q ss_pred HHHhcCCHHHHHH
Q 036198 456 QLSVIGDLGAIHK 468 (499)
Q Consensus 456 ~~~~~g~~~~a~~ 468 (499)
++ ..|+.+.+.+
T Consensus 242 ~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 242 AY-DEQDEEQLLR 253 (307)
T ss_dssp HH-HTTCHHHHHH
T ss_pred HH-HhcCHHHHHH
Confidence 55 5788776665
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=0.00015 Score=71.20 Aligned_cols=332 Identities=9% Similarity=0.014 Sum_probs=201.9
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhh-hHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhc
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAK-QFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (499)
.....+..+|...... .|+...|...+.-.. +.+ ..+.+..+|+.....-
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~----~~~~~~~~i~~~fe~al~~v---------------------- 78 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVR----KVSQKKFKLYEVYEFTLGQF---------------------- 78 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHH----HHC----CTHHHHHHHHHHS----------------------
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHH----HhCchHHHHHHHHHHHHHHc----------------------
Confidence 4567788899887653 469999999888877 444 2345556666655431
Q ss_pred CC-CCCHHHHHHHHHHHH----hCCChHHHHHHHHHhhcCCCCCh--hhHHHH-------------------------HH
Q 036198 172 KT-QPEINALNLLLDALC----KCGLVDYAETICKRVKNKVKPNA--NTYNIL-------------------------GM 219 (499)
Q Consensus 172 ~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~p~~--~~~~~l-------------------------a~ 219 (499)
|. +.+...|...+..+. ..|+.+.+..+|++... +|+.. ..|... |.
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar 157 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSF 157 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHH
Confidence 11 234556666665543 24567778888888766 22221 111111 12
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036198 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKAR--M-----VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292 (499)
Q Consensus 220 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 292 (499)
.+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|.
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~----p~~~~lW~~ya~~~~~~~~~~~ar 233 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF----YYAEEVYFFYSEYLIGIGQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 22222221100013345555555433221 1 345778999988864 456888988999999999999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CC---CCCHhhHHHHHHHHHHcCCHHH
Q 036198 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---------GY---PPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 293 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------~~---~p~~~~~~~li~~~~~~g~~~~ 360 (499)
.+|++.... +.+...+. .|+...+.++. ++.+.+. +. ......|...+....+.++.+.
T Consensus 234 ~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 234 KVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 999999987 33332222 22222111111 2222211 00 0112456666777777889999
Q ss_pred HHHHHHHHHHCCCCcChhhHH--HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYN--MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
|..+|+.. ... ..+...|. +.+.... .++.+.|..+|+...+.- +-+...+...++.....|+.+.|..+|+.+
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999 321 12344443 2233222 236999999999987752 223455666777777889999999999987
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 439 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
. -....|...+.--...|+.+.+.++++++.+.
T Consensus 381 ~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 381 E-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp C-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 25778888887777889999999998888763
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=6.1e-06 Score=71.10 Aligned_cols=129 Identities=11% Similarity=-0.098 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 258 (499)
.+..+...+...|++++|.+.|++.. .|+...+..+..++.+.|++++|++.|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 61 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------------------------DPHSRICFNIGCMYTILKNMTEAEKAFT 61 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556667778888888888877652 3466778888888888888888888888
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------c-CHHhHHHHHHHHHhcCCH
Q 036198 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL--------------P-DVSTYKEVLEGMCLAGKV 323 (499)
Q Consensus 259 ~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~ll~~~~~~g~~ 323 (499)
+..+.. +.+...|..+..++...|++++|...|+...+..-. | ....+..+..++...|++
T Consensus 62 ~al~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 62 RSINRD----KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhC----ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 887764 346777888888888888888888888888764211 1 125666677777788888
Q ss_pred HHHHHHHHHHHhCC
Q 036198 324 EEAYKFLEEMGNKG 337 (499)
Q Consensus 324 ~~a~~~~~~m~~~~ 337 (499)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 88888887777654
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.61 E-value=2.2e-07 Score=75.55 Aligned_cols=83 Identities=16% Similarity=0.060 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|...|++..+... -+...+..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 3444444555555555555444443221 344444455555555555555555555444321 12344444455555555
Q ss_pred CchHH
Q 036198 392 EPDGA 396 (499)
Q Consensus 392 ~~~~a 396 (499)
+.++|
T Consensus 114 ~~~~a 118 (150)
T 4ga2_A 114 VTDGR 118 (150)
T ss_dssp SSSSH
T ss_pred ChHHH
Confidence 54443
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.60 E-value=2.4e-07 Score=75.26 Aligned_cols=83 Identities=6% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|...|+...+.. +-+...+..+...|
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ----ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELL 109 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555554443 2234445555555555555555555555544432 22334444444444
Q ss_pred HhcCCHHH
Q 036198 318 CLAGKVEE 325 (499)
Q Consensus 318 ~~~g~~~~ 325 (499)
.+.|+.++
T Consensus 110 ~~~~~~~~ 117 (150)
T 4ga2_A 110 CKNDVTDG 117 (150)
T ss_dssp HHHCSSSS
T ss_pred HHcCChHH
Confidence 44444433
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.59 E-value=5.7e-06 Score=71.29 Aligned_cols=130 Identities=12% Similarity=-0.061 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+..+...+...|++++|++.|++. ..|+..+|..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 34556777888899999999999876 24578889999999999999999999999988764 45677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPP---------------DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
.++...|++++|.+.|+...+..... ....+..+..++.+.|++++|...|+...+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999988753221 12677788888889999999999999888754
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=1.3e-05 Score=73.16 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcC--
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECFSLLGHMINSGC---LPD-- 306 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~-- 306 (499)
.+...+..+...|++++|.+.++...+.... .++. ..+..+...+...|++++|...+++..+... .+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3444555666666777776666666554310 0100 1122333444555566666666665543211 111
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGN---K-GYPP--DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWP- 375 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~- 375 (499)
..+|+.+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 23455555556666666666666655441 1 1001 11355555555556666666666555544321 000
Q ss_pred ChhhHHHHHHHHHhcCCchHH-HHHHHH
Q 036198 376 SVQTYNMLISMYFELGEPDGA-FETWHE 402 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a-~~~~~~ 402 (499)
-..+|..+..+|.+.|+.++| ...+++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 134455555555555555555 444444
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.55 E-value=4.2e-05 Score=70.42 Aligned_cols=231 Identities=9% Similarity=-0.007 Sum_probs=167.5
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc-C-
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA-G- 321 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g- 321 (499)
.+.+..++|+++++.+.... +-+..+|+.--..+...| .++++++.++.+.... +-+..+|+.--..+.+. +
T Consensus 65 ~~~e~se~AL~lt~~~L~~n----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HhCCCCHHHHHHHHHHHHhC----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 34445578999999999876 446778888888888888 5999999999999774 45667777766666665 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC-
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD--------EALRLYGRMIEVGCWPSVQTYNMLISMYFELGE- 392 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~- 392 (499)
++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 889999999999987654 7777777666666666666 89999999988653 477788887777777775
Q ss_pred ------chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHHCC----
Q 036198 393 ------PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV--------------------EEACFLLEEVVNKG---- 442 (499)
Q Consensus 393 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~---- 442 (499)
++++++.+++..... +-|...|+-+-..+.+.|+. .+..+...++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 578888888877653 33777777766666665543 33444444443322
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHH
Q 036198 443 -LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 443 -~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
-.++...+.-+.+.|...|+.++|.++++.+.+.+.|.-.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 13577888899999999999999999999998877775433
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.54 E-value=4.3e-06 Score=76.95 Aligned_cols=203 Identities=10% Similarity=-0.041 Sum_probs=121.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE----INALNLLLDALCKCGLVDYAETICKRVKNK 206 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (499)
..|++++|.+++++..+...... .+..++ ...|+.....|...|++++|.+.|.+..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~-----------------~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~- 64 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF-----------------MKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE- 64 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS-----------------SSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ccchHHHHHHHHHHHHHHccccc-----------------cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 45778888888887655321000 001122 22566667788888999999888887643
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHH
Q 036198 207 VKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--AKTYAIMIVALV 283 (499)
Q Consensus 207 ~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~ 283 (499)
+. .+.|-.+ -..+|+.+..+|.+.|++++|+..|++..+.....-.+. ..+++.+...|.
T Consensus 65 --------------~~---~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 65 --------------AH---ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp --------------HH---HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred --------------HH---HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 1122111 245778888888888999999988887765321001121 356667777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---c--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHH
Q 036198 284 QNDRMEECFSLLGHMINSGCL---P--DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPPD-IVTYNCFLKVLC 353 (499)
Q Consensus 284 ~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~ 353 (499)
. |++++|...|++..+.... + ...++..+...|.+.|++++|.+.|++..+. +..+. ...+..+...+.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 7 8888888888776643100 0 1345666677777777777777777766542 11111 124455555566
Q ss_pred HcCCHHHHHHHHHHHH
Q 036198 354 DNKNGDEALRLYGRMI 369 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~ 369 (499)
..|++++|...|++..
T Consensus 207 ~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHh
Confidence 6677777777777666
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=9e-06 Score=74.16 Aligned_cols=176 Identities=10% Similarity=-0.077 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
..+...+..+...|++++|.+.+.+..+..+...... .....+..+...+...|++++|+..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~ 138 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-----------------QFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-----------------HHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-----------------HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3556677888999999999999987665321111100 01223445667788899999999999
Q ss_pred HHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcC-----HHhHHHHHHHHHhcCCHHHHHHH
Q 036198 258 EFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPD-----VSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 258 ~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
++..+.......+. ..+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|.+.
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 99886542211222 558899999999999999999999998732 01122 25788899999999999999999
Q ss_pred HHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 036198 330 LEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEA-LRLYGRMIE 370 (499)
Q Consensus 330 ~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 370 (499)
+++..+. +... -..+|..+...|.+.|++++| ...+++...
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9987543 1111 156788899999999999999 777877653
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=6.2e-06 Score=67.69 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3456667777778888888888888877764 3456777777777788888888888887777653 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN--CFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
..++...|++++|.+.+++..+.... +...+. .....+...|++++|...+....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777777776665322 333332 23333556677777777766543
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=6.4e-06 Score=63.68 Aligned_cols=98 Identities=9% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3455566666666666666666666666553 2345556666666666666666666666665542 2344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
...+...|++++|.+.++++.+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 55666666666666666655543
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=9.5e-06 Score=63.43 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|...|++..+.. +.+...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHH
Confidence 455666677777777777777777776654 3456667777777777777777777777766653 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.++...|++++|.+.|+...+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 6667777777777777666654
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=2.8e-06 Score=72.49 Aligned_cols=157 Identities=10% Similarity=-0.111 Sum_probs=75.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cChhhHHHHHHHHHhcCCc
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GCW-PSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~ 393 (499)
..|++++|.++++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123344555555555555555555555554431 111 1233455555556666666
Q ss_pred hHHHHHHHHHhHC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 036198 394 DGAFETWHEMDKR----GCAQ--DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 394 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~ 462 (499)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666665554332 1011 1233455555566666666666666655422 110 012234555566666677
Q ss_pred HHHHHHHHHHHHhh
Q 036198 463 LGAIHKLSDHMRKF 476 (499)
Q Consensus 463 ~~~a~~~~~~m~~~ 476 (499)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666554
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=3.6e-06 Score=71.86 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=84.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHh
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL-PDVSTYKEVLEGMCL 319 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~ 319 (499)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+..
T Consensus 3 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH----PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHHTS----TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4567778888755544332 2234667777777777788888888777776652 111 123445556666677
Q ss_pred cCCHHHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cChhhHHHHHHHHH
Q 036198 320 AGKVEEAYKFLEEMGNK----GYPP--DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GCW-PSVQTYNMLISMYF 388 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~ 388 (499)
.|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+...+.
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 77777777766654432 1111 1234555556666666666666666665431 110 01123345555555
Q ss_pred hcCCchHHHHHHHHH
Q 036198 389 ELGEPDGAFETWHEM 403 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m 403 (499)
..|++++|.+.+++.
T Consensus 159 ~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRA 173 (203)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHH
Confidence 556666655555544
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=9.6e-06 Score=63.25 Aligned_cols=118 Identities=8% Similarity=-0.061 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 4455556666666666666666666666543 2345556666666666666666666666665542 2234455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 357 (499)
...+...|++++|.+.++...+... .+...+..+..++.+.|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 5556666666666666655554421 134444444444444443
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=9.9e-06 Score=66.43 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
..+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666777777777777777776643 2345667777777777788888888777776642 23566777777778
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDS--YLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
...|++++|...+++..+.... +...+.. ....+...|++++|.+.+....+.+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 8888888888888887766432 4444433 3334667788888888887766543
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=8.7e-06 Score=63.85 Aligned_cols=116 Identities=6% Similarity=-0.024 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 45566667777777777777777777776653 3356666666667777777777777777666553 234555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
+..++...|++++|.+.|++..+.... +...+..+...+.+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 666666666666666666665554211 23344444444433
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=4.5e-06 Score=67.56 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+.. +.+...|..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 4456666667777777777777777777664 3456667777777777777777777777776653 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..+|...|++++|...|+...+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777777766654
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.37 E-value=2e-05 Score=60.80 Aligned_cols=98 Identities=11% Similarity=0.175 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4566666777777777777777777776553 33455666666777777777777777777665432 245566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 036198 352 LCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~ 371 (499)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 77777777777777766654
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=1.9e-05 Score=61.88 Aligned_cols=120 Identities=10% Similarity=-0.057 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
+.+...|..+...+...|++++|.+.|++..+. .+.+...+..+..++...|++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------------------~~~~~~~~~~la~~~~~~~~~~~A 69 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----------------------NPKDAKLYSNRAACYTKLLEFQLA 69 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----------------------CTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------CCCcHHHHHHHHHHHHHhccHHHH
Confidence 445678999999999999999999999987652 122677888999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
++.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 70 ~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 70 LKDCEECIQLE----PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC----CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999875 4578899999999999999999999999998763 234455666666665554
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.35 E-value=5.5e-06 Score=69.10 Aligned_cols=122 Identities=6% Similarity=0.059 Sum_probs=86.3
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH-HHhcCCH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG-MCLAGKV 323 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~ 323 (499)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 34677888888888877764 4467788888888888888888888888887653 3355666666666 6677887
Q ss_pred --HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 324 --EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 324 --~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
++|...++...+.... +...+..+...+...|++++|...|+++.+..
T Consensus 96 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888877765422 46677777777888888888888888877653
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.34 E-value=0.00034 Score=64.39 Aligned_cols=231 Identities=8% Similarity=0.019 Sum_probs=164.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHH
Q 036198 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR-MVTEAADLFEF 259 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~ 259 (499)
+.+-....+.+..++|+++++++... . +-+..+|+.--..+...| .+++++++++.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~----------------------n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~ 114 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM----------------------N-PAHYTVWQYRFSLLTSLNKSLEDELRLMNE 114 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH----------------------C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh----------------------C-chhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33333344455567888888887652 1 114566777777777778 59999999999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH--------HHHHH
Q 036198 260 MRTKGSTISSPTAKTYAIMIVALVQN-D-RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE--------EAYKF 329 (499)
Q Consensus 260 m~~~~~~~~~p~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~ 329 (499)
+.... +-+..+|+.-...+.+. + ++++++++++.+.+.. +-|...|+--.-.+.+.|.++ ++++.
T Consensus 115 ~L~~n----PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 115 FAVQN----LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHTT----CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHhC----CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 99886 45788888888777776 7 8899999999999764 446667765555555555555 89999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc---------
Q 036198 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKN-------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP--------- 393 (499)
Q Consensus 330 ~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~--------- 393 (499)
++++.+..+. |..+|+.....+.+.++ ++++++.+++++.... -|...|+-+-..+.+.|..
T Consensus 190 ~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 190 CNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCccccccccc
Confidence 9999887655 78888888888877776 6889999988887642 4677787766666666654
Q ss_pred -----------hHHHHHHHHHhHCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 394 -----------DGAFETWHEMDKRG-----CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 394 -----------~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
....++...+...+ -.++......+++.|...|+.++|.++++.+.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22333333332221 1367888899999999999999999999998755
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.34 E-value=2.1e-05 Score=61.41 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 460 (499)
......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|...+++.++.+. .+...|..+..++...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHC
Confidence 333444444444444444444443321 11334444444444444444444444444444331 1344444444445555
Q ss_pred CCHHHHHHHHHHHHhhcCh
Q 036198 461 GDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~ 479 (499)
|++++|.+.|++..+..|.
T Consensus 95 ~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 5555555555554444443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=2.1e-05 Score=70.01 Aligned_cols=129 Identities=12% Similarity=-0.079 Sum_probs=61.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC--HHHHHHHHHHHHhC
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD--VDTYCVMIDGLFDC 425 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~ 425 (499)
....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344445555555555555554432 322233333334555555555555555333221 010 12344445555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 426 SKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 426 g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
|++++|+..|++.......|. .........++.+.|+.++|...|+++....|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 666666666665553222132 223344445555566666666666666655554
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.33 E-value=2.2e-05 Score=63.41 Aligned_cols=103 Identities=9% Similarity=-0.090 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036198 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456 (499)
Q Consensus 377 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 456 (499)
...+..+...+.+.|++++|...|+...+.. +-+...|..+..+|...|++++|...|++..+.... ++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3456666677777778888888777776652 225667777777777778888888888777776532 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 457 LSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
|...|++++|.+.|++..+..+...
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7788888888888887777765543
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.32 E-value=2.9e-05 Score=60.45 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 34566666777777777777777777776653 33566666677777777777777777777665432 24556666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
.+...|++++|...+++..+... .+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 77777777777777777666431 2445555666666655543
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=5.8e-06 Score=74.93 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444444455555555555555555554442 2234444444445555555555555555444432 2233344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~ 334 (499)
..++...|++++|...|+...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444433
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=4.2e-06 Score=75.89 Aligned_cols=194 Identities=10% Similarity=-0.006 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.++...+... -+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 56778888999999999999999999999874 34788899999999999999999999999988743 36788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCh-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSV-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
++...|++++|...|++..+.+ |+. ..+...+....+. .++ .-+..........+......+ ..+ ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 9999999999999999987643 221 1111112211111 111 112223333334444443333 222 258888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q 036198 430 EACFLLEEVVNKGLKLPYR-KFDSYLMQLSVI-GDLGAIHKLSDHMRKF 476 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~m~~~ 476 (499)
+|.+.+++..+.. |+.. ....+-..+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9998888776653 4443 333443444444 6688889888877653
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.30 E-value=3.1e-05 Score=68.90 Aligned_cols=197 Identities=10% Similarity=-0.067 Sum_probs=140.2
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCcC------------
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIM-------IVALVQNDRMEECFSLLGHMINSGCLPD------------ 306 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~------------ 306 (499)
..++.+.|.+.|.+..... +-....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 6899999999999999986 3456777776 3455544444455444444333 2221
Q ss_pred ----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 036198 307 ----------VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376 (499)
Q Consensus 307 ----------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 376 (499)
....-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 1223345677889999999999999987754 444366666678889999999999998654422 111
Q ss_pred --hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 377 --VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 377 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+......
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a 246 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 34677888999999999999999999885433254 3355666777889999999999999999875 44444443
Q ss_pred H
Q 036198 453 Y 453 (499)
Q Consensus 453 l 453 (499)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.0016 Score=59.67 Aligned_cols=236 Identities=8% Similarity=-0.059 Sum_probs=164.5
Q ss_pred HHHhcCCHh-HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 243 TFCKARMVT-EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR----------MEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 243 ~~~~~g~~~-~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
...+.|.++ +|+++++.+.... +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n----P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~ 112 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 112 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344566655 7999999999875 3355666654444443332 678889999888764 45677777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 312 EVLEGMCLAG--KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN-GDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 312 ~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
.-.-.+.+.| .+++++++++.+.+.... +..+|+.-.-.+...|. ++++++.+..+.+..+ -|...|+.....+.
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 7666777777 489999999999987654 77888888777888888 5899999999998763 46677776666555
Q ss_pred hc--------------CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHCCC
Q 036198 389 EL--------------GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC-----------SKVEEACFLLEEVVNKGL 443 (499)
Q Consensus 389 ~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~ 443 (499)
+. +.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+..
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~- 268 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE- 268 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-
Confidence 54 34678888888877653 33666776554444444 45789999999998775
Q ss_pred CCC-HHHHHHHH---HHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 444 KLP-YRKFDSYL---MQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 444 ~p~-~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
|+ ...+.+++ .+....|..+++...+.++++..|-....+-.+.
T Consensus 269 -pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 269 -PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred -cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 44 33332222 2233568888999999999998776555544443
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=2.2e-05 Score=73.16 Aligned_cols=96 Identities=13% Similarity=-0.047 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
..|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 456666666666666666666666665542 22555666666667777777777777777666542 2455666666666
Q ss_pred HhcCCHHHH-HHHHHHHHh
Q 036198 458 SVIGDLGAI-HKLSDHMRK 475 (499)
Q Consensus 458 ~~~g~~~~a-~~~~~~m~~ 475 (499)
.+.|+.++| ...++.|.+
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 667776666 345555544
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=2.7e-05 Score=72.54 Aligned_cols=132 Identities=6% Similarity=-0.060 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-------------AKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
+...+..+...|.+.|++++|+..|++..+.... .++ ..+|..+..+|.+.|++++|...+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~--~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY--ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc--cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567778888888899999999999988876521 010 3566666666666666666666666666
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH-HHHHHHH
Q 036198 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA-LRLYGRM 368 (499)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m 368 (499)
+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.++| ...|+.|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 334556666666666666666666666666554322 445555566666666666655 3344444
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.25 E-value=1.1e-05 Score=65.07 Aligned_cols=97 Identities=9% Similarity=-0.082 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...+++...... -+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33344444444555555555554444331 11344444444444555555555555555444431 13344444445555
Q ss_pred hcCCHHHHHHHHHHHHhhc
Q 036198 459 VIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~ 477 (499)
..|++++|.+.+++..+..
T Consensus 101 ~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 5555555555555554443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=1.1e-05 Score=67.23 Aligned_cols=122 Identities=9% Similarity=0.122 Sum_probs=81.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhcCCc--h
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFELGEP--D 394 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~ 394 (499)
...|++++|...++...+... .+...|..+...|...|++++|...|++..+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 456777777777777666532 3566777777778888888888888887776431 245566666666 6677777 8
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
+|...++...+.. +.+...+..+...|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888887776652 2245667777777777888888888888777664
No 148
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.24 E-value=0.0011 Score=65.03 Aligned_cols=313 Identities=9% Similarity=-0.019 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCC-
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL- 192 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 192 (499)
--..|...+..+- . |+++.+..+|++..... |+...|...+....+.|.
T Consensus 14 aR~vyer~l~~~P----~-~~~e~~~~iferal~~~-------------------------ps~~LW~~Y~~f~~~~~~~ 63 (493)
T 2uy1_A 14 PSAIMEHARRLYM----S-KDYRSLESLFGRCLKKS-------------------------YNLDLWMLYIEYVRKVSQK 63 (493)
T ss_dssp HHHHHHHHHHHHH----T-TCHHHHHHHHHHHSTTC-------------------------CCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCC----C-CCHHHHHHHHHHHhccC-------------------------CCHHHHHHHHHHHHHhCch
Confidence 3455666666665 2 77889999999887643 677777777777766653
Q ss_pred hHHHHHHHHHhhcCCC---CChhhHHHH----------------HHHHHHHHHHcCCCCCHHHHHHHHHHHH--------
Q 036198 193 VDYAETICKRVKNKVK---PNANTYNIL----------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC-------- 245 (499)
Q Consensus 193 ~~~A~~~~~~m~~~~~---p~~~~~~~l----------------a~~~~~~m~~~g~~p~~~~~~~li~~~~-------- 245 (499)
.+....+|+.....+. ++...|... +..+|++.+.....--...|......-.
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHH
Confidence 3455666666554222 222333222 4556666655211101112222111110
Q ss_pred -----hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 246 -----KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND--R-----MEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 246 -----~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
..+.+..|..+++.+...- ...+...|...+..-...+ - .+.+..+|+++.... +.+...|...
T Consensus 144 ~~~~~~~~~y~~ar~~y~~~~~~~---~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~y 219 (493)
T 2uy1_A 144 KIVGDTLPIFQSSFQRYQQIQPLI---RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFY 219 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 0112333444444443321 0113345555555433221 1 345677888888753 4557778778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC------------CCcChhhHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG------------CWPSVQTYN 381 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------~~~~~~~~~ 381 (499)
+..+.+.|+.+.|..+++..... +.+...|. .|....+.++. ++.+.+.- .......|.
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 88888999999999999998887 32332222 23332222222 22222210 011134566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV--MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
..+....+.++.+.|..+|... .. ...+...|.. .+.... .++.+.|..+|+...+... -++..+...++-..+
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Confidence 6777777788899999999998 32 1224444432 222222 2369999999999887642 245566677777788
Q ss_pred cCCHHHHHHHHHHH
Q 036198 460 IGDLGAIHKLSDHM 473 (499)
Q Consensus 460 ~g~~~~a~~~~~~m 473 (499)
.|+.+.|..+++++
T Consensus 367 ~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 367 IGDEENARALFKRL 380 (493)
T ss_dssp HTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999888886
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=7e-05 Score=56.95 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|.+.|+...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 4455666667777777777777777776654 3356666666667777777777777777766553 2345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..++...|++++|.+.++...+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 66666667777777666666554
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=9.2e-06 Score=65.59 Aligned_cols=93 Identities=9% Similarity=-0.127 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
+..+...+...|++++|...|+...+.. +.+...+..+..+|...|++++|.+.|+........ +...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3333444444444444444444444332 223333444444444444444444444444333211 23334444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 036198 355 NKNGDEALRLYGRMI 369 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~ 369 (499)
.|++++|...|+...
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=5e-05 Score=59.05 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455666666777777777777777776654 3456667777777777777777777777776653 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..++...|++++|.+.|++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 66677777777777766666553
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.14 E-value=9.4e-05 Score=57.47 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+... -+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 3344444445555555555555444431 12344455555555555555555555555554432 234455555555555
Q ss_pred cCCHHHHHHHHHHHHhhc
Q 036198 460 IGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~ 477 (499)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 555555555555555544
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=3.2e-05 Score=58.29 Aligned_cols=98 Identities=20% Similarity=0.083 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--CHHhHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP--DVSTYK 311 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~ 311 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 3455566666667777777777777666654 3345566666666666667777766666666542 22 355566
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhC
Q 036198 312 EVLEGMCLA-GKVEEAYKFLEEMGNK 336 (499)
Q Consensus 312 ~ll~~~~~~-g~~~~a~~~~~~m~~~ 336 (499)
.+...+... |++++|.+.++.....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666666 6666666666666554
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00017 Score=69.53 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=141.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcC
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSP-------------TAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPD 306 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 306 (499)
...+.+.|++++|++.|..+.+........ ...++..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 456788999999999999998865321000 0134778899999999999999999988753 11122
Q ss_pred H----HhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--
Q 036198 307 V----STYKEVLEGMCLAGKVEEAYKFLEEMGN----KGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--GC-- 373 (499)
Q Consensus 307 ~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-- 373 (499)
. .+.+.+-..+...|+.+.|.+++..... .+..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1223333444567899999999887643 22222 2457788899999999999999999987653 11
Q ss_pred Cc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 374 WP-SVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 374 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
.+ ...++..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888999999999999999999887542 21211 24566667777788999999888876653
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.12 E-value=8.6e-05 Score=56.44 Aligned_cols=97 Identities=19% Similarity=0.060 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555566666666665555432 1234445555555555555555555555554431 11344445555555
Q ss_pred HhCCCHHHHHHHHHHHHHC
Q 036198 423 FDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~ 441 (499)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555443
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.00016 Score=69.71 Aligned_cols=200 Identities=9% Similarity=-0.040 Sum_probs=142.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPD----------------VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPD 341 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~ 341 (499)
.+.+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3566789999999999999987532111 1246778999999999999999998865431 1112
Q ss_pred H----hhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CC--
Q 036198 342 I----VTYNCFLKVLCDNKNGDEALRLYGRMIE----VGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR--GC-- 408 (499)
Q Consensus 342 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-- 408 (499)
. .+.+.+-..+...|+++.|..+++.... .+..+. ..++..+...|...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1223333344457899999999988764 232233 457788999999999999999999987542 11
Q ss_pred CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 409 AQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLP----YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 409 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+ ....+..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...+.+..+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 12 2457888899999999999999999887643 22212 24566667777889999999998888776543
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=6.6e-05 Score=59.90 Aligned_cols=97 Identities=8% Similarity=-0.104 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 344555666667777777777777766654 3456666666667777777777777777766653 33445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.+|...|++++|.+.|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666667777776666665543
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.10 E-value=0.00011 Score=57.97 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...++...+.. +.+...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 44555555555666666666666666555543 2344555555555555566666665555555443 223444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+..++...|++++|...|+...+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.09 E-value=5.7e-05 Score=60.28 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC
Q 036198 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 425 (499)
..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|+...+.. +.+...+..+..+|...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 3334444445555555555555444321 233444444444455555555555555444431 11233344444444445
Q ss_pred CCHHHHHHHHHHHHH
Q 036198 426 SKVEEACFLLEEVVN 440 (499)
Q Consensus 426 g~~~~a~~~~~~m~~ 440 (499)
|++++|...+++..+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544443
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=5.7e-05 Score=58.74 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcC----H
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPD----V 307 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~ 307 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 3455666667777777777777777776654 33566666666777777777777777776665421 111 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.++..+...+...|++++|.+.|+...+.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45555556666666666666666665553
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.07 E-value=0.00011 Score=60.23 Aligned_cols=99 Identities=7% Similarity=-0.073 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45567777777888888888888888877764 3467777777888888888888888888877764 335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
+..+|...|++++|.+.|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 777778888888888887777654
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=7.9e-05 Score=63.31 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--------------AKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
...+..+...+.+.|++++|++.|++..+.... .|+ ...|..+..+|...|++++|...++...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345666777788888888888888888775421 111 1445555555555555555555555555
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 036198 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (499)
+.. +.+...+..+..+|...|++++|.+.|+...+... -+...+..+..++...++.++
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 442 23344444555555555555555555555444321 133344444444444333333
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=0.00022 Score=56.83 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHh
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD----NFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 251 (499)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|+++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~ 82 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG------------------------LDATPQDQAVLHRNRAACHLKLEDYD 82 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------------------------SCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------------HcccchHHHHHHHHHHHHHHHHccHH
Confidence 455666666666666677766666666544 1233 455556666666666666
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+|++.+++..+.. +.+...+..+..++...|++++|...|++..+.
T Consensus 83 ~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 83 KAETEASKAIEKD----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHT----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666553 234555666666666666666666666666554
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.04 E-value=5.3e-05 Score=57.08 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL--PYRKFDSYLMQ 456 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~ 456 (499)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444555555555555555544431 1234445555555555555555555555555443 11 34455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhhcC
Q 036198 457 LSVI-GDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 457 ~~~~-g~~~~a~~~~~~m~~~~~ 478 (499)
+... |++++|.+.+++..+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 5555 555555555555555444
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=7.6e-05 Score=58.01 Aligned_cols=98 Identities=7% Similarity=0.058 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY--PPD----IVTYN 346 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~ 346 (499)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++....... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455566666666777777777777666553 33455566666666666666666666666554321 111 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+...+...|++++|...|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5556666666666666666666553
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00021 Score=56.96 Aligned_cols=97 Identities=9% Similarity=-0.037 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQD----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 454 (499)
.+..+...+...|++++|.+.|+...+. .|+ ...+..+...|...|++++|...+++..+... .+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHHH
Confidence 3444444444444444444444444432 222 33444444444455555555555554444321 1344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 455 MQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.++...|++++|.+.+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555555555555555555554443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.02 E-value=9.7e-05 Score=60.56 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=75.3
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
+...+..+...+.+.|++++|...|++..+.. ..+...|..+..+|...|++++|...++...+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777778888888888888888887754 2356677788888888888888888888877653 225667777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCC
Q 036198 421 GLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
+|...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888877654
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=0.00015 Score=56.56 Aligned_cols=97 Identities=8% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcC----HH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPD----VS 308 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~ 308 (499)
..+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.+++..+.. ..++ ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 455666677777777777777777776654 3356667777777777777777777777665431 0111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+|..+..++...|++++|.+.|++...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555666666665555444
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.02 E-value=0.00017 Score=56.80 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
+.+...+..+...+...|++++|...|....+.. +.+...+..+..++...|++++|...++...+.+.. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3456677777777777777777777777776653 334566677777777777777777777776665322 45666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~ 370 (499)
..++...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777776665
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=0.00015 Score=56.59 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY--PPD----IVTYN 346 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~ 346 (499)
.++..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.++...+.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555666666666666666666666543 33455556666666666666666666665544211 001 12344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+..++...|++++|.+.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555566666655555544
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=0.00013 Score=61.89 Aligned_cols=147 Identities=9% Similarity=-0.096 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
...+..+...+.+.|++++|.+.|++.....+.+.............. .....|..+..+|.+.|++++|+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN-------IEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH-------HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 346777888999999999999999998653111110000000000000 0136788899999999999999999
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 036198 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY-KFLEEMGN 335 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~ 335 (499)
++...+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus 111 ~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 111 ASKVLKID----KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHhC----cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999875 4578899999999999999999999999998764 345677777777777777766665 44444443
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=6e-05 Score=61.08 Aligned_cols=135 Identities=11% Similarity=-0.035 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCC-CHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PS----VQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQ-DVD 413 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~ 413 (499)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 11 135556666666677777777766665432 1111 134
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5566666777778888887777766533 211 1134566777888888888888888888776543
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.95 E-value=0.00013 Score=56.43 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556677778888888888888888764 3467777788888888888888888888887764 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 036198 316 GMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~ 336 (499)
++...|++++|...++...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.93 E-value=0.00019 Score=55.80 Aligned_cols=65 Identities=6% Similarity=-0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.+..+..++...|++++|...+++..+.... + ...+..+..++...|++++|.+.++++.+.+|.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3334444444455555555555544443211 1 333444444555555555555555555544443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=0.00012 Score=59.29 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444555555555544443321 0000 02234444444455555555555554443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.91 E-value=0.0063 Score=55.63 Aligned_cols=112 Identities=6% Similarity=-0.047 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHHh
Q 036198 233 DNFTYNTAIDTFCKAR--MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR-MEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
+..+|+.-.-.+.+.| .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++.+.+.. +-|...
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d----prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 6777777777777777 4889999999999876 5678888888878788887 688888888888775 456667
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 310 YKEVLEGMCLA--------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 310 ~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
|+.....+.+. +.++++++.+......... |..+|+-+--
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ 235 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRW 235 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 76665555544 3356666666666554322 4555544333
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.88 E-value=0.00014 Score=56.13 Aligned_cols=96 Identities=7% Similarity=-0.130 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 460 (499)
..+...+.+.|++++|...++...+.. +-+...|..+..++...|++++|...+++..+.... +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344445555666666666666655431 124455555555666666666666666666555422 445555666666666
Q ss_pred CCHHHHHHHHHHHHhhcC
Q 036198 461 GDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 461 g~~~~a~~~~~~m~~~~~ 478 (499)
|++++|.+.+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 666666666666655443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.79 E-value=0.0012 Score=51.12 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLE 315 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~ 315 (499)
.+...+.+.|++++|...|+...+.... .......+..+..++...|++++|...|+...+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455666677777777777777665411 01111455666666777777777777777766543 112 444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 036198 316 GMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~ 336 (499)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777776666554
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.78 E-value=6.1e-05 Score=57.76 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHCC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 355 NKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|.+.+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 11223444555555555555555555555554432 113444445555555555555555
Q ss_pred HHHHHHHHC
Q 036198 433 FLLEEVVNK 441 (499)
Q Consensus 433 ~~~~~m~~~ 441 (499)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=0.00051 Score=66.79 Aligned_cols=124 Identities=7% Similarity=-0.054 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-------------AKTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
...|..+...|.+.|++++|+..|++..+.... .++ ..+|..+..+|.+.|++++|...+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~--~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM--EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456777788888888888888888888775411 111 34555555555555555555555555554
Q ss_pred cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 036198 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361 (499)
Q Consensus 301 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 361 (499)
.. +.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.++.+++
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 42 234445555555555555555555555555544221 334444444444444444444
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.78 E-value=0.0001 Score=72.16 Aligned_cols=122 Identities=13% Similarity=0.060 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455678899999999999999875 4468899999999999999999999999999874 456788899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV--LCDNKNGDEALRLYG 366 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 366 (499)
..|++++|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998876422 34455555555 788899999999988
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00021 Score=69.63 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=39.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCcCHHhHHHH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSP----TAKTYAIMIVALVQNDRMEECFSLLGHMINS-----G--CLPDVSTYKEV 313 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~l 313 (499)
...|++++|+.++++..+.......| ...+++.+...|...|++++|..++++..+. | .+....+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556666666555554422111111 1334555555555555555555555544321 1 01112334444
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~ 332 (499)
...|...|++++|+.++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444443
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.69 E-value=0.0034 Score=50.93 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHh
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA----------PDNFTYNTAIDTFCK 246 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~----------p~~~~~~~li~~~~~ 246 (499)
...+......+.+.|++++|...|.+... ++.......-+ -+...|..+..+|.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 75 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALT---------------RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN 75 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888899999999999999998654 12211111111 134577788888888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
.|++++|+..++...+.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 76 ~~~~~~A~~~~~~al~~~----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 76 IGDLHEAEETSSEVLKRE----ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 888888888888888875 446778888888888888888888888888776
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.00051 Score=64.64 Aligned_cols=138 Identities=9% Similarity=-0.100 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+..+...+.+.|++++|++.|++..+.. +... .....+ ...+. -+.+...|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-----~~~~----------~~~~~~-------~~~~~-~~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-----EGSR----------AAAEDA-------DGAKL-QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHH----------HHSCHH-------HHGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----hcCc----------cccChH-------HHHHH-HHHHHHHHHHHH
Confidence 456777888889999999999998887621 0000 000000 00000 011234445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
.+|.+.|++++|.+.+++..+... .+...|..+..+|...|++++|...|++..+... .+...+..+..++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554432 1344555555555555555555555555554321 13344444444444444444
Q ss_pred HHH
Q 036198 395 GAF 397 (499)
Q Consensus 395 ~a~ 397 (499)
++.
T Consensus 359 ~a~ 361 (370)
T 1ihg_A 359 DKE 361 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00062 Score=66.22 Aligned_cols=123 Identities=8% Similarity=-0.052 Sum_probs=57.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD--------------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555566666677777777777766655321111 2444444445555555555555555544432
Q ss_pred CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 373 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
. .+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 233444444444555555555555555444431 11222334444444444444433
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00023 Score=69.37 Aligned_cols=124 Identities=11% Similarity=-0.043 Sum_probs=62.4
Q ss_pred HHHcCCHHHHHHHHHHHHHc---CCC---c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHhhHHH
Q 036198 282 LVQNDRMEECFSLLGHMINS---GCL---P-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-----GY-PP-DIVTYNC 347 (499)
Q Consensus 282 ~~~~~~~~~a~~~~~~m~~~---~~~---~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~ 347 (499)
+...|++++|+.++++..+. -+. | ...+++.|..+|...|++++|..++++..+. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33556666666666655432 011 1 2345566666666666666666666554321 11 11 2234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----CCC-CcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIE-----VGC-WPS-VQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
|...|...|++++|+.++++..+ .|. .|+ ..+.+.+-.++...+.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655442 121 011 22334444555555555666666555543
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.65 E-value=0.00021 Score=69.94 Aligned_cols=121 Identities=10% Similarity=-0.081 Sum_probs=95.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 036198 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357 (499)
Q Consensus 278 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 357 (499)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +..+|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3345667899999999999999874 446888999999999999999999999999887533 67889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHH--HHhcCCchHHHHHHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISM--YFELGEPDGAFETWH 401 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 401 (499)
+++|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999987542 233455555555 888899999999988
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.63 E-value=0.0011 Score=53.99 Aligned_cols=103 Identities=13% Similarity=0.025 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--------CCCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTK--------GSTI------SSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 298 (499)
....+......+.+.|++++|+..|.+.... .... .+.+...|..+..+|.+.|++++|...++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888899999999999999888764 1000 0012234555555555555555555555555
Q ss_pred HHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 299 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.+.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5542 233445555555555555555555555555443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.58 E-value=0.00016 Score=55.43 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=35.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
.|++++|+..|++..+.+.. .+.+..++..+...|...|++++|...|++..+.. +-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555443200 01123344444444444555555555554444432 22333444444444444444444
Q ss_pred HHHHHHHH
Q 036198 327 YKFLEEMG 334 (499)
Q Consensus 327 ~~~~~~m~ 334 (499)
.+.+++..
T Consensus 81 ~~~~~~al 88 (117)
T 3k9i_A 81 VELLLKII 88 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00021 Score=66.45 Aligned_cols=154 Identities=8% Similarity=-0.145 Sum_probs=78.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 4556666777778888888888888876542 33221 11223333332221 11367788888
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ-LSVIGDLGA 465 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~ 465 (499)
|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887653 236778888888999999999999999888655421 33444444443 234566777
Q ss_pred HHHHHHHHHhhcChhH
Q 036198 466 IHKLSDHMRKFYNPVI 481 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~ 481 (499)
+.+++.+|.+..+...
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 8888888877665544
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.56 E-value=0.0011 Score=62.32 Aligned_cols=140 Identities=7% Similarity=-0.034 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 352 (499)
..+..+...+.+.|++++|...|++..+.- +.. ......+.+. +. -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 346666777888888888888888776531 110 0011111111 11 112457888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 353 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 2357788999999999999999999999988763 226667777778888888777765
Q ss_pred HH
Q 036198 433 FL 434 (499)
Q Consensus 433 ~~ 434 (499)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0034 Score=49.48 Aligned_cols=111 Identities=7% Similarity=-0.085 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 036198 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEAC 432 (499)
Q Consensus 357 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 432 (499)
++++|.+.|++..+.|. |+.. |-..|...+..++|.+.|++..+.| +...+..+-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34444555554444441 2211 3333334444444555555544432 33444444444444 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcC
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSV----IGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~ 478 (499)
.+|++..+.| +...+..|...|.. .++.++|.+.+++..+...
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5555555543 33444444444544 4555555555555554433
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.48 E-value=0.00043 Score=64.38 Aligned_cols=148 Identities=9% Similarity=-0.045 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+.+.|++++|+..|++..... |+... +...++..++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-----GDDFM-------FQLYGKYQDMALAVK----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-----CHHHH-------HTCCHHHHHHHHHHH----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----ccchh-------hhhcccHHHHHHHHH----------HHHHHHH
Confidence 4456777888889999999999999988754 33321 112222333222211 1256667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHH-HHhcC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISM-YFELG 391 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~-~~~~~ 391 (499)
..+|.+.|++++|...++...+... .+...|..+..+|...|++++|...|++..+.. |+ ...+..+... ....+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
Confidence 7777778888888888777766532 256677777777888888888888887776532 33 3344444433 23345
Q ss_pred CchHHHHHHHHHhHC
Q 036198 392 EPDGAFETWHEMDKR 406 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~ 406 (499)
..+++..+|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 566677777777554
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.42 E-value=0.0062 Score=47.96 Aligned_cols=110 Identities=8% Similarity=-0.001 Sum_probs=60.6
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKVE 324 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~ 324 (499)
++++|+++|++..+.| .|... +...|...+..++|.+.|++..+.| +...+..|-..|.. .++++
T Consensus 10 d~~~A~~~~~~aa~~g----~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACELN----EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHTT----CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCC----CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 4566666666666655 22222 4444445555666666666666553 34455555555555 55666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036198 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 372 (499)
+|.+.|+...+.| +...+..|-..|.. .+++++|...|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666655543 34455555555555 556666666666555544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.41 E-value=0.0018 Score=51.92 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNK-----GLKLP-YRKF----DSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|.+.|++..+..|.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6666777777777777777777777664 11343 4466 77777888888888888888887776443
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.40 E-value=0.011 Score=58.83 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC-CchHHHHH
Q 036198 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK--NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-EPDGAFET 399 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~ 399 (499)
++++++.++.+.+.+.+ +..+|+.-.-.+.+.+ +++++.+.++++.+... -+...|+.-...+.+.| .++++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 55555555555554333 4445555555555555 44666666666655432 24455555444555555 55566666
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 400 WHEMDKRGCAQDVDTYCVMIDGLFDC--------------SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
++++.+.... |..+|+.....+.+. +.++++.+.+++....... +...|..+-..+.+.|..
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 6655554322 445555444444331 4567888888888776533 666777766666666653
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.38 E-value=0.0035 Score=50.26 Aligned_cols=65 Identities=15% Similarity=0.012 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-----TA-----KTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
...+......+.+.|++++|+..|++..+.... .| +. ..|..+..++.+.|++++|+..++..++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~--~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT--MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344566677788888899999988888876521 11 11 2555555555556666665555555554
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.28 E-value=0.012 Score=58.55 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN----------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
..++|++.++.+...+.. +..+|+.--.++...|+ ++++.+.++.+.+... -+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 346778888888776533 45566665555555565 8999999999998653 46778887777788888
Q ss_pred --CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 036198 392 --EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS-KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI-------- 460 (499)
Q Consensus 392 --~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------- 460 (499)
+++++.+.++++.+.... |..+|+.-...+.+.| .++++.+.++++.+..+. +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 669999999999887543 7888888888888888 899999999999888754 788888877777663
Q ss_pred ------CCHHHHHHHHHHHHhhcChhHHHHH
Q 036198 461 ------GDLGAIHKLSDHMRKFYNPVIARRL 485 (499)
Q Consensus 461 ------g~~~~a~~~~~~m~~~~~~~~~~~~ 485 (499)
+.++++.+++.+..+..|...+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 5578999999999988877655544
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.23 E-value=0.0052 Score=43.80 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4455666666666777777777777666653 2345566666666666666666666666666542 2234444444
Q ss_pred HHHHH
Q 036198 314 LEGMC 318 (499)
Q Consensus 314 l~~~~ 318 (499)
..++.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0016 Score=48.73 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44566667777777777777777777777654 345666777777777777777777777777654
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.14 E-value=0.0041 Score=46.99 Aligned_cols=77 Identities=13% Similarity=-0.052 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
|...|++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...+++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 1234444555555555555555555555554431 1233444455555555555555555555444
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.0042 Score=46.94 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
|++.|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|+.
T Consensus 4 a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444432 2344455555555555555555555555555432 22334444455555555555555555544
Q ss_pred HH
Q 036198 333 MG 334 (499)
Q Consensus 333 m~ 334 (499)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0033 Score=46.87 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555555555666666666665555442 234445555555555555555555555555543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.03 E-value=0.0089 Score=42.51 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555555666666666666666655542 223445555555555556666666555555443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.75 E-value=0.0097 Score=43.65 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566677777777777777777777777664 23455677777777777777777777776654
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.74 E-value=0.0085 Score=43.97 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 377 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
...+..+..+|...|++++|.+.|++..+... .+...|..+..+|...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555554321 133445555555555555555555555544
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.68 E-value=0.021 Score=54.68 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhhHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSG---CLP----DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-----G-YPPD-IVTYN 346 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~ 346 (499)
.+.+.|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.++++.... | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445556666666666555321 111 1344556666666666666666666554321 1 1122 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666666666654
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.63 E-value=0.0069 Score=48.42 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=21.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 288 (499)
+.+.+++|.+.++...+.. +.+...|..+..++...+++
T Consensus 14 r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhccc
Confidence 3445566666666666554 33555555555555555443
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.01 Score=56.77 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNK-----G-YPPD-IVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|...|..+|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34444555555555555555554443221 1 1111 2345555555555555555555555543
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.59 E-value=0.0079 Score=48.07 Aligned_cols=101 Identities=14% Similarity=0.009 Sum_probs=60.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 036198 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK----------VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353 (499)
Q Consensus 284 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 353 (499)
+.+.+++|.+.++...+.. +.+...|..+-.++...++ +++|+..|++.++.+.. +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4455666777777666654 3455666666666665554 34677777776665433 4556666666666
Q ss_pred HcC-----------CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 354 DNK-----------NGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 354 ~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
..| ++++|.+.|++..+. .|+...|...+...-
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 553 677777777776663 356566655554443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.52 E-value=0.067 Score=49.22 Aligned_cols=135 Identities=10% Similarity=0.023 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHH--hcC---CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---cC--CHHHHH---HHHH
Q 036198 230 HAPDNFTYNTAIDTFC--KAR---MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ---ND--RMEECF---SLLG 296 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~---~~--~~~~a~---~~~~ 296 (499)
.+.+...|...+++.. ..+ ...+|..+|++..+.. +-....|..+.-+|.. .+ ...... ..+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD----P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS----PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 3446666777665543 223 3578889999988875 2234555544444431 00 000000 0111
Q ss_pred HHHH-cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 297 HMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 297 ~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.... ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1000 0113334444444444444455555555555544443 3444444444444445555555555544444
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.046 Score=57.15 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 036198 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 355 (499)
..++..+.+.|.++.|.++.++-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666666666666665542111 1123345566666666664332 2456666666666677
Q ss_pred CCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036198 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 435 (499)
|+++.|++.|.++.. |..+...|...|+.+...++-+.....| -++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 777777666666532 2233444444555555555444444332 1233334444555555555555
Q ss_pred HH
Q 036198 436 EE 437 (499)
Q Consensus 436 ~~ 437 (499)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.50 E-value=0.0065 Score=58.08 Aligned_cols=71 Identities=1% Similarity=-0.133 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
..+++.|..+|...|++++|+.++++..+ +++.......+-...+++.|...|...|++++|+.+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~---------------i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~ 404 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIK---------------PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKA 404 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 45899999999999999999999998754 233332222332456789999999999999999999
Q ss_pred HHHHHH
Q 036198 257 FEFMRT 262 (499)
Q Consensus 257 ~~~m~~ 262 (499)
+++..+
T Consensus 405 ~~~Al~ 410 (433)
T 3qww_A 405 LKKAIA 410 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.33 E-value=0.016 Score=55.40 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCcC-hhh
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKG---YPP----DIVTYNCFLKVLCDNKNGDEALRLYGRMIE-----VG-CWPS-VQT 379 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~~~-~~~ 379 (499)
+..+.+.|++++|++++++..+.. ..| ...+++.+..+|...|++++|+.++++..+ .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777765431 111 234567777777777777777777776553 12 1122 345
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777666653
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.16 E-value=0.13 Score=47.37 Aligned_cols=72 Identities=10% Similarity=-0.063 Sum_probs=40.3
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+ |...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 344555555555555566666666666665543 555555555555556666666666666655543 444443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.15 E-value=0.15 Score=53.17 Aligned_cols=131 Identities=10% Similarity=0.090 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
....++..+.+.|..++|.++.+. |. .-.......|+++.|+++.+.+ .+...|..+..
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~----------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~ 689 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPD----------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGD 689 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCC----------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCC----------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHH
Confidence 346666667777777777665521 11 1133456789999998886443 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+.....| -++....+|.+.|++++
T Consensus 690 ~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 690 ASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQG 754 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHH
Confidence 99999999999999987743 3345555555677666555554444433 12223333444555555
Q ss_pred HHHHHHH
Q 036198 396 AFETWHE 402 (499)
Q Consensus 396 a~~~~~~ 402 (499)
|.+++.+
T Consensus 755 a~~~~~~ 761 (814)
T 3mkq_A 755 AKDLLIK 761 (814)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.22 Score=40.42 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
.......|+++.|.++.+.+ -+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556788888888887765 3678888888888888888888888877642 33444455567777
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
++..++-+.....| -++.....+.-.|+++++.++|.+ .|-.|-... .....|-.+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 77776666555443 256666667778888888888844 332221111 122356677777777665
Q ss_pred H
Q 036198 474 R 474 (499)
Q Consensus 474 ~ 474 (499)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 3
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.92 E-value=0.072 Score=38.32 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 411 DVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
|...+..+..++...++ .++|..++++.++.... +......+...+.+.|++++|...|+++.+..++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44444444444433222 45555555555554422 4445555555555555555555555555555554
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.71 E-value=0.49 Score=36.13 Aligned_cols=65 Identities=14% Similarity=-0.016 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.+...++.+...|+-++..+++.++... -+|++...-.+..||.+.|+..+|.+++.+..+.+.+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3444455555566666666665554332 2455555556666666666666666666665555443
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.70 E-value=0.14 Score=40.42 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKGLKL--PYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
.+.+-|.+..+.|. ++..+.-.+..++++++ +++++..++++..+.+ .| ....+..+.-+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444544444433 45555556666666666 4556666666666554 22 234444555566667777777777
Q ss_pred HHHHHhhcChh
Q 036198 470 SDHMRKFYNPV 480 (499)
Q Consensus 470 ~~~m~~~~~~~ 480 (499)
++.+.+..|..
T Consensus 94 ~~~lL~ieP~n 104 (152)
T 1pc2_A 94 VRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCCCC
Confidence 77666665543
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.65 E-value=0.09 Score=37.90 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-TYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
....+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445666777777777777776654 23455 6666777777777777777777777665
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.6 Score=37.80 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...|..|.......|+++-|++.|.+..+ |..+.-.|.-.|+.+...+
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------------------------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS-------------------------------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------------------------HHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------------------------HHHHHHHHHHhCCHHHHHH
Confidence 344666666666666666666666665543 3334444445555555555
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 296 (499)
+-+....+| -++.....+.-.|+++++.++|.
T Consensus 82 la~iA~~~g---------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRE---------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCc---------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444443 13344444555566666655553
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.40 E-value=0.078 Score=38.27 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
....+...|++++|.+.++...+.. +.+.. .+..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667788888888888776642 22445 67777777778888888888888877665
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.30 E-value=0.7 Score=35.30 Aligned_cols=144 Identities=16% Similarity=0.145 Sum_probs=82.3
Q ss_pred HHHHHH--HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh---HHH
Q 036198 238 NTAIDT--FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST---YKE 312 (499)
Q Consensus 238 ~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ 312 (499)
..||.+ +.-.|.+++..++..+..... +..-||-+|--....-+-+-..++++.+-+. .|... ...
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ss------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKr 79 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSS------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKS 79 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCC------CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHH
Confidence 344443 345688888888888887654 4555666666556666666666666655432 22211 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
++.+|.+.+. +.......+..+..+|.-+.-.+++..+.. +.+|+....-.+..+|.+.|+
T Consensus 80 Vi~C~~~~n~------------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~ 140 (172)
T 1wy6_A 80 VVECGVINNT------------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGD 140 (172)
T ss_dssp HHHHHHHTTC------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc------------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcc
Confidence 3333333321 344555556666666666666666666433 234556666666666666666
Q ss_pred chHHHHHHHHHhHCCCC
Q 036198 393 PDGAFETWHEMDKRGCA 409 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~ 409 (499)
..+|.+++.+.-+.|++
T Consensus 141 ~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 141 ERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHhhhH
Confidence 66666666666666643
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.05 E-value=0.29 Score=35.91 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhHC------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 377 VQTYNMLISMYFELGEPDGAFETWHEMDKR------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 377 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
..-+..|...+.+.|+++.|...++...+. +-.+....+..+..++.+.|++++|..++++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334445555555666666666666554432 01123445555555555666666666665555543
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.95 E-value=0.39 Score=34.35 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 233 DNFTYNTAIDTFCKARM---VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+...+..+..++...++ .++|..++++..+.. +-+..+...+...+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555555543333 566666666666654 334556666666666666666666666666654
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.82 E-value=0.18 Score=44.47 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHCCCCcC---hhhHHHHHHHHHhc-----CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC-CCH
Q 036198 358 GDEALRLYGRMIEVGCWPS---VQTYNMLISMYFEL-----GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC-SKV 428 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 428 (499)
...|...+++..+.. |+ ...|..+...|... |+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 355666677766643 44 45777777778774 88888888888887753222366777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 429 EEACFLLEEVVNKGLK--LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
+++.+.+++.+..... |+....+. +.-++|..++.++...|
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQDFF 299 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHHhc
Confidence 8888888888887666 55443333 33456666666665554
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.17 E-value=0.6 Score=34.11 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
.+..+..++.+.|+++.|...+++..
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.07 E-value=1.5 Score=34.20 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=74.6
Q ss_pred CHhhHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCcChh-hHHHHHHH------HHhcCCchHHHHHHHHHhHCC
Q 036198 341 DIVTYNCFLKVLCDNKNG------DEALRLYGRMIEVGCWPSVQ-TYNMLISM------YFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~------~~~~~~~~~a~~~~~~m~~~~ 407 (499)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566677777777667777 7777888877763 445421 11111111 123478999999999987653
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
-+- ...|-....-=.+.|+++.|.+++......+.+ +...+...++-+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 333 566666666666899999999999999988865 455555555433
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.68 E-value=0.7 Score=36.40 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCc--CHHhHHHHHHHHHhcCCHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND---RMEECFSLLGHMINSGCLP--DVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~ 325 (499)
..+.+-|.+..+.+ .++..+...+..++++++ +.+++..++++..+.. .| +...+-.+.-+|.+.|++++
T Consensus 15 ~~~~~~y~~e~~~~----~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHTT----CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 33444444444443 245555555555555555 3445555555555543 12 12233334444555555555
Q ss_pred HHHHHHHHHhC
Q 036198 326 AYKFLEEMGNK 336 (499)
Q Consensus 326 a~~~~~~m~~~ 336 (499)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.09 E-value=0.47 Score=35.99 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKL--PYRKFDSYLMQLSVIGDLGAIH 467 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~ 467 (499)
+..+.+-|......|. |+..+--.+..+++++..... +..++.+....+ .| .......+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444433332 455555555555665554443 556666555543 12 2233334445666666666666
Q ss_pred HHHHHHHhhcC
Q 036198 468 KLSDHMRKFYN 478 (499)
Q Consensus 468 ~~~~~m~~~~~ 478 (499)
++++.+.+..|
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 66666666544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.01 E-value=1.2 Score=39.32 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc-
Q 036198 250 VTEAADLFEFMRTKGSTISSPT---AKTYAIMIVALVQ-----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA- 320 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~- 320 (499)
...|...+++..+.. |+ ...|..+...|.. .|+.++|.+.|++..+.+-.-+..++....+.++..
T Consensus 179 l~~A~a~lerAleLD-----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW-----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC-----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 567888888888865 44 6688899999988 499999999999999875222467777788888884
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCHhhHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYP--PDIVTYNC 347 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~--p~~~~~~~ 347 (499)
|+.+++.+.+++....... |+....+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999999887665 55444333
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.58 E-value=2.4 Score=33.12 Aligned_cols=31 Identities=3% Similarity=-0.041 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHHc
Q 036198 233 DNFTYNTAIDTFCKARMV------TEAADLFEFMRTK 263 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~ 263 (499)
|..+|-..+...-+.|+. ++..++|++....
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 566677777777666777 6777777766665
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.64 E-value=3 Score=39.03 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHH---HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCcCHH
Q 036198 233 DNFTYNTAIDTF---CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME-ECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 233 ~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~ 308 (499)
|...|..++... ...|+.+.|.+.+++....-....-++.. ...|- ....-++++. ..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------VL 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------HH
Confidence 555565555443 34588888888888887643110111110 01111 1111111111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcChhhH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE-----VGCWPSVQTY 380 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 380 (499)
....++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 22335566666677777766666665442 23556667777777777777777776666542 3666665543
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.80 E-value=2.3 Score=30.46 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=48.7
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
...+.|+..+..+.+++|-+.+++.-|.++|+-++.++.+....|..+..++=--+.+.|++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkPtl~ELGI~ 99 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 99 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhHHHHhCCC
Confidence 34578999999999999999999999999999999876666555766655555555555664
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.55 E-value=11 Score=35.11 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHH---hCCChHHHHHHHHHhhcC----CCCChh--hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036198 176 EINALNLLLDALC---KCGLVDYAETICKRVKNK----VKPNAN--TYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246 (499)
Q Consensus 176 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~----~~p~~~--~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~ 246 (499)
|...|..++.... ..|+.+.|.+.+++...- .-++.. .|..-...-++++. ..+...++..+..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~ 183 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDK-------VLAHTAKAEAEIA 183 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4555666655433 458899998888887652 222221 12111111122211 1123445666677
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHhH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVSTY 310 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 310 (499)
.|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 184 ~g~~~~a~~~l~~~~~~~----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEH----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp TTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 777777777777776654 45667777777777777777777777776643 3677766543
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.55 E-value=14 Score=40.12 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHhH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~ 252 (499)
.+...--.+..+|...|++++|.+.|.+...++..+......+ .-+..+..... ..-..=|..++..+-+.|.++.
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVL--REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSH--HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhh--cccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 3444444566788899999999999998765543332221111 01111221111 1123346778888888888888
Q ss_pred HHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 253 AADLFEFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
+.++-....+.... ..++ ...|..+.+++...|++++|...+-.+..... -......++..+|..|+.+.
T Consensus 918 vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 918 ALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 88887776654311 1111 22577788888888888888888877765533 34456666666666665443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.17 E-value=2 Score=32.47 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=11.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.-++.+.|++++|.+.++.+.+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555544
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.17 E-value=2.3 Score=43.39 Aligned_cols=52 Identities=8% Similarity=-0.108 Sum_probs=36.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
-|...|+++-|+++.++....- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445677777777777776654 235667777777777777777777777666
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.09 E-value=21 Score=36.38 Aligned_cols=56 Identities=5% Similarity=0.007 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
=...|...|+++.|+++-++..... +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~a----PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELA----LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcC----chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456778999999999999998874 5568999999999999999999999998873
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.19 E-value=4.9 Score=30.56 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=50.4
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
....+.|+..+..+.+++|-+.+++.-|..+|+-++.++.+....|..+..++=--+.+.|++
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPtl~ELGI~ 142 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 142 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhHHHHhCCC
Confidence 445688999999999999999999999999999999876666666776655555555566664
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.04 E-value=16 Score=39.73 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=114.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC----------------
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GY---------------- 338 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~---------------- 338 (499)
+..+...+..+.+.++.... +.+...--.+..+|...|++++|.+.|.+.... +.
T Consensus 819 ~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 33344445544444433221 234444445667888999999999999764211 00
Q ss_pred --CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH
Q 036198 339 --PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS----VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412 (499)
Q Consensus 339 --~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 412 (499)
..-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+++++...|++++|...+-.+.+...+ .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 00123467788889999999999988887765422111 226888999999999999999999988876443 4
Q ss_pred HHHHHHHHHHHhCCCHHH------------HHHHHHHHH-HC-CCCCCHHHHHHHH-HHHHhcCCHHH-HHHHHHHHHhh
Q 036198 413 DTYCVMIDGLFDCSKVEE------------ACFLLEEVV-NK-GLKLPYRKFDSYL-MQLSVIGDLGA-IHKLSDHMRKF 476 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~------------a~~~~~~m~-~~-~~~p~~~~~~~ll-~~~~~~g~~~~-a~~~~~~m~~~ 476 (499)
.....++..+|..|..+. +.+++..-- .. .+...+ .|..++ .=+...||+.+ |.-+|+.+.+.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p-~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQP-CWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCC-CHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 577788887877665544 334433211 11 111111 233444 33355677664 45556666554
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.77 E-value=20 Score=33.33 Aligned_cols=165 Identities=10% Similarity=-0.036 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc---CHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhH--
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINS-GCLP---DVSTYKEVLEGMCLAG-KVEEAYKFLEEMGNKGYPPDIVTY-- 345 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~-- 345 (499)
.+...+...|.+.|+.++..+++.....- +..+ .......+++.+.... ..+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45566777788888888877777766432 1111 2334556666665532 33333333333322100 011222
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-----hhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCCCCHHH
Q 036198 346 ----NCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-----VQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDT 414 (499)
Q Consensus 346 ----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~ 414 (499)
.-++..|...|++.+|.+++.++.+.=-..| ...|-.-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1456677777777777777777665211111 234455556666777777777777665432 12233332
Q ss_pred HHHH--H--HHHH-hCCCHHHHHHHHHHH
Q 036198 415 YCVM--I--DGLF-DCSKVEEACFLLEEV 438 (499)
Q Consensus 415 ~~~l--i--~~~~-~~g~~~~a~~~~~~m 438 (499)
...+ . ..+. ..+++.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2211 1 1233 567777777666554
No 244
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.65 E-value=3.4 Score=36.16 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 036198 181 NLLLDALCKCGLVDYAETICKR 202 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~ 202 (499)
++.+...++.|+.+....+++.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT
T ss_pred chHHHHHHHcCCHHHHHHHHHc
Confidence 3456667778888776666543
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.51 E-value=7.2 Score=27.98 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++++.++..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666666677777777777777777777777777777777654
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.81 E-value=25 Score=33.45 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=111.9
Q ss_pred cCCHhHHHHHHHHHHHcC---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcCHHhHHHHHHHH----H
Q 036198 247 ARMVTEAADLFEFMRTKG---STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGM----C 318 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~----~ 318 (499)
.|+++.|++.+..+.+.. .+ ...+......++..|...++++...+.+.-+.+. |..+. ....+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d-~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASD-LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCS-TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHh
Confidence 377888888887777532 11 3445677788888999999998888877766643 33222 223333332 2
Q ss_pred hcCCHHHH--HHHHHHHHhC--C-CCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcC---hhhHHHHHH
Q 036198 319 LAGKVEEA--YKFLEEMGNK--G-YPP---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--GCWPS---VQTYNMLIS 385 (499)
Q Consensus 319 ~~g~~~~a--~~~~~~m~~~--~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~ 385 (499)
.....+.. ..+.+..... | +-. .......|...+...|++.+|..++.++... |.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332221 1111111110 1 111 1122345677788888888888888887642 32111 345667777
Q ss_pred HHHhcCCchHHHHHHHHHhH----CCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 386 MYFELGEPDGAFETWHEMDK----RGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
.|...+++.+|..+++.+.. ....|+ ...|...+..+...+++.+|.+.|.+..
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888888888888887642 222222 2345566667777788888877766654
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.46 E-value=0.00088 Score=63.02 Aligned_cols=247 Identities=14% Similarity=0.056 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
...+|..|..+..+.|++.+|++-|-+. -|+..|..++.++.+.|.+++-.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----------------------------~Dps~y~eVi~~A~~~~~~edLv~ 104 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------------------DDPSSYMEVVQAANTSGNWEELVK 104 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----------------------------SCCCSSSHHHHHTTTSSCCTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----------------------------CChHHHHHHHHHHHhCCCHHHHHH
Confidence 3447888888888888888887655222 156677888999999999999988
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.+...++.. -.| ..=+.|+-+|++.++..+..+.+ -.||..-...+.+-|...|.++.|.-+|..+..
T Consensus 105 yL~MaRk~~---ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN 172 (624)
T 3lvg_A 105 YLQMARKKA---RES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN 172 (624)
T ss_dssp HHHTTSTTC---CST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC
T ss_pred HHHHHHHHh---ccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc
Confidence 887766654 223 34457888999988865543332 236666677778888888888888777765532
Q ss_pred C--------------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 336 K--------------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 336 ~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
. .-.-++.||--+..+|...+++.-|.-.--.++-. ..-...++..|-..|.+++
T Consensus 173 ~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~E 247 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEE 247 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHH
Confidence 1 11236789999999999999988776555554422 2223446677888999999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
.+.+++.-... -+.....|+.|.-.|++- +.++.++.++..-.+ + ..-.++++|....-|.++.-++..-.+
T Consensus 248 LIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr-i-----NipKviracE~ahLW~ElvfLY~~ydE 319 (624)
T 3lvg_A 248 LITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR-V-----NIPKVLRAAEQAHLWAELVFLYDKYEE 319 (624)
T ss_dssp STTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS-S-----CCTTTHHHHTTTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHhhHHHHHHHHhcchh
Confidence 99999887643 245778899998888875 345444444332111 1 112466777777777777666655443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.89 E-value=11 Score=28.73 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 410 QDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
|+..+--.+..+++++.. ..++..++++..+.+..-....+-.+.-++.+.|++++|.++.+.+.+..|
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 444444444444444443 234555555555444111233344444556666666666666666555543
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.51 E-value=16 Score=27.88 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
+.-+..+-++.+...++-|++....+.+++|.+.+|+..|.++++-++..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555666666677777777777777777777777777777777654
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.30 E-value=38 Score=32.16 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH----HHcCCHHH--HHHHHHHHHH--c
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL----VQNDRMEE--CFSLLGHMIN--S 301 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~--a~~~~~~m~~--~ 301 (499)
..........++..|.+.|+++...+.+..+..... . .-.....+++.+ ......+. -..+.+.+.. .
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~---q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte 127 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG---Q-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 127 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT---T-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSS
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh---h-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Confidence 344567788889999999999998888887766542 1 122233444333 22333222 1222221111 1
Q ss_pred C-CCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 036198 302 G-CLPD---VSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--GYPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMIE-- 370 (499)
Q Consensus 302 ~-~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 370 (499)
| +-.. ......|...+...|++.+|.+++..+... |.... ...+...+..|...+++..|..++..+..
T Consensus 128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 1 1111 122345778888899999999999887643 22211 24566777888899999999998888642
Q ss_pred --CCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 371 --VGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 371 --~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
....|+ ...+...+..+...+++.+|.+ .|..+...+...++.......+..+
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~---------------~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQ---------------YLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH---------------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH---------------HHHHHHhcccccCCHHHHHHHHHHH
Confidence 222222 2344556666666677766644 4777777777777776655555544
No 251
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.99 E-value=26 Score=31.97 Aligned_cols=214 Identities=12% Similarity=0.063 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR--MEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
....+|.-|...|+.++|...++++.... . .......++......++ -+.+-.++..+.. ++-+.......+
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~---~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf 129 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE---M--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSF 129 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG---G--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch---h--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 35788888999999999999999864221 1 12222333333233332 3456666666663 555555555444
Q ss_pred HHHHHhcCCHH----HHHHHH----HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH---HHH------------
Q 036198 314 LEGMCLAGKVE----EAYKFL----EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR---MIE------------ 370 (499)
Q Consensus 314 l~~~~~~g~~~----~a~~~~----~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---m~~------------ 370 (499)
...+....+.. .|.+++ ..+...++-|-......... . .-+.+.++++. +..
T Consensus 130 ~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~----~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~W 204 (358)
T 3eiq_C 130 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT----V-DCVQARAALDKATVLLSMSKGGKRKDSVW 204 (358)
T ss_dssp HHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CC
T ss_pred HHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhc----c-cchHHHHHHHHHHHHHhccchHHHHHHhc
Confidence 44444433322 233332 23333333332221111000 0 11112222221 111
Q ss_pred ---CCCCcC---hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCC
Q 036198 371 ---VGCWPS---VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVVNKG 442 (499)
Q Consensus 371 ---~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~ 442 (499)
.|..|. ......++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+.+++..+...|
T Consensus 205 G~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 205 GSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 012222 224588899999999999999999999643222 23344555556655443 456888899998888
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 036198 443 LKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 443 ~~p~~~~~~~ll~~~~~~g 461 (499)
+-........+.+.+....
T Consensus 284 lls~~q~~~Gf~~vl~~ld 302 (358)
T 3eiq_C 284 TITIDQMKRGYERIYNEIP 302 (358)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 7655555555554444433
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.62 E-value=21 Score=27.57 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 410 QDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
|+..+--.+..+++++.. ..++..++++....+..-.......+.-++.+.|++++|.++.+.+.+..|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 444444444445554443 234555555555433211223333444555566666666666555555544
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.32 E-value=18 Score=34.25 Aligned_cols=100 Identities=8% Similarity=-0.101 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcCHHhH--
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---GCLPDVSTY-- 310 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~-- 310 (499)
+...+...|.+.|+++.|.+.|.++...... ..--...+-..++.+...+++..+...+.+.... +-.|+...-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 5677899999999999999999999886422 2334678888999999999999999999887643 222222110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..-...+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 01112234578899888888776443
No 254
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=75.57 E-value=44 Score=29.77 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK--VEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 467888899999999999999998632111 22334445555555433 456778888888877765554444444444
Q ss_pred Hhc
Q 036198 458 SVI 460 (499)
Q Consensus 458 ~~~ 460 (499)
...
T Consensus 248 ~~l 250 (307)
T 2zu6_B 248 NEI 250 (307)
T ss_dssp HHH
T ss_pred Hhc
Confidence 333
No 255
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.16 E-value=6.1 Score=34.43 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=37.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh--HHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT--YNMLISMY 387 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~ 387 (499)
.+...+..|+.+-+..+++.. |..++ ....+.+.. .+..+......++.+.+.+.|..++... -...+...
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 344445566665544444321 32222 222233333 3345555555566666666665544321 11223334
Q ss_pred HhcCCchHHHHHH
Q 036198 388 FELGEPDGAFETW 400 (499)
Q Consensus 388 ~~~~~~~~a~~~~ 400 (499)
+..|+.+-+..++
T Consensus 227 ~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 227 VEKKHLGLVQRLL 239 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 4556655444333
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.16 E-value=30 Score=30.06 Aligned_cols=116 Identities=11% Similarity=0.067 Sum_probs=78.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcCHHhHHHHHHHHHh
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~ 319 (499)
....+.|++++|++....-.+.. +-|...-..++..+|-.|++++|.+-++...+.. ..|....|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~----P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH---
Confidence 45678899999999999888875 6688888999999999999999999999888763 12223345555543
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-----CHhhHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 036198 320 AGKVEEAYKFLEEMGNKGYPP-----DIVTYNCFLKVLC--DNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 371 (499)
+..=.++...+-.| ...-...++.+.. ..|+.++|..+-.++.+.
T Consensus 78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222232322222 1223445555544 469999999998888653
No 257
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=74.10 E-value=17 Score=31.97 Aligned_cols=174 Identities=11% Similarity=0.000 Sum_probs=82.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh---HHHHHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST---YKEVLEG 316 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~ 316 (499)
.+...+..|+.+-+..++ +.|.....++..-++. +...+..|+.+-+..++ +.|..++... +...+..
T Consensus 65 ~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~ 135 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYH 135 (285)
T ss_dssp HHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHH
Confidence 455556677766444443 4452211222222233 33445667665444443 3454443322 1345555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.+..|..+-+.- +.+.|..+ +...-.+.+...+..|..+-+.-+++.-..-.. .+..-.+..+...+..|+.
T Consensus 136 A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 136 AVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp HHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH--
T ss_pred HHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH--
Confidence 666777654443 44444333 221334445555677888777766665433221 1211222222333445553
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE 436 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 436 (499)
++.+.+.+.|..|+..... -+..|+.+-+.-+++
T Consensus 209 --~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 209 --EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIE 242 (285)
T ss_dssp --HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHH
Confidence 4556666777776655421 134565554444444
No 258
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.39 E-value=17 Score=30.62 Aligned_cols=89 Identities=8% Similarity=0.058 Sum_probs=48.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGM 317 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~ 317 (499)
.+...++.|+.+.+..+++.+.+.+......+..-.+ .+...+..|+.+ +++.+.+.|..++... -...+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 4556677788888888888776665322222222222 334445566654 3444455555443321 12344555
Q ss_pred HhcCCHHHHHHHHHHH
Q 036198 318 CLAGKVEEAYKFLEEM 333 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m 333 (499)
+..|+.+.+..+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 6677777666666554
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.23 E-value=15 Score=29.28 Aligned_cols=131 Identities=8% Similarity=-0.035 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHH--HHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC--HHHHHHHH
Q 036198 109 DNYAHEPLAYNLM--IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE--INALNLLL 184 (499)
Q Consensus 109 ~~~~~~~~~~~~l--i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~li 184 (499)
.|+.|....|+.+ +..+. ..|.++.|+-+.+.+.......++ -..|. ..++..+.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~----d~~LY~sA~~La~lLlSl~~~~~~-----------------~~sp~~~~~~l~~la 70 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMA----AAGLHSNVRLLSSLLLTLSNNNPE-----------------LFSPPQKYQLLVYHA 70 (167)
T ss_dssp ---------CCHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHSTT-----------------SSCHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHhhcCCcc-----------------cccHHHHHHHHHHHH
Confidence 3445544444333 56666 778888887777664433200000 01121 23567788
Q ss_pred HHHHhCCChHHHHHHHHHhhc---CCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 036198 185 DALCKCGLVDYAETICKRVKN---KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~---~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 261 (499)
+++...|++..|...|++... .+.-+..+...+... -..-......++.+.--.+..||.+.|++++|+.+++.+.
T Consensus 71 dalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~-ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 71 DSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS-ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCC---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 899999999999999999643 111110000000000 0000000122233444456677777777777777766543
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.87 E-value=20 Score=33.83 Aligned_cols=98 Identities=10% Similarity=0.061 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH---CCCCCCHHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDK---RGCAQDVDTYCVM 418 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l 418 (499)
+...+...|.+.|+++.|.+.|.++...- ..--...+-.+++.+...+++..+...+.+... .+-.|+...--..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667777777788888888877776532 222234566667777777777777777776643 2222222211111
Q ss_pred --HHHHHhCCCHHHHHHHHHHHHHC
Q 036198 419 --IDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 419 --i~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
...+...+++.+|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11223456677777766665443
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.47 E-value=28 Score=24.89 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=3.7
Q ss_pred HcCCHHHHHH
Q 036198 354 DNKNGDEALR 363 (499)
Q Consensus 354 ~~g~~~~a~~ 363 (499)
..|++++|..
T Consensus 52 NrG~Yq~Al~ 61 (116)
T 2p58_C 52 NRGDYASALQ 61 (116)
T ss_dssp HTTCHHHHHH
T ss_pred cchhHHHHHH
Confidence 3333333333
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.45 E-value=47 Score=28.80 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
..+.|.+++|++.+..-++... -|...-..+++-+|-.|+|++|.+-++...+..+...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3455666666666555555542 2455555555666666666666666665555554433
No 263
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.04 E-value=18 Score=30.38 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=15.6
Q ss_pred HHHHHHhCCChHHHHHHHHHhh
Q 036198 183 LLDALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~ 204 (499)
.+...++.|+.+.+..+++.+.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677888888877777544
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.37 E-value=41 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=6.4
Q ss_pred HHhcCCchHHHHHHHHH
Q 036198 387 YFELGEPDGAFETWHEM 403 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m 403 (499)
+.+.|++++|.+..+.+
T Consensus 88 ~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 88 CYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33333333333333333
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.94 E-value=1.4e+02 Score=31.31 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=90.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHHcCC
Q 036198 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG--MCLAGKVEEAYKFLEEMGNKGYPPDIVTY--NCFLKVLCDNKN 357 (499)
Q Consensus 282 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~ 357 (499)
+...|+-+....++..+.+. .+..+...+.-+ +...|+.+.+..+++.+.... .|....- .++..+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 44556666666666665543 233333333333 346678777777777776541 1222111 123345667778
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV-EEACFLLE 436 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~ 436 (499)
.....++++.+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-.++.-+....|.. .+|..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 777777888777642 2233333333334445677777777777666543 34444334444444444443 56777888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH
Q 036198 437 EVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 437 ~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
.+... +|..+-..-+.++.
T Consensus 654 ~L~~D---~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 654 PLTKD---PVDFVRQAAMIALS 672 (963)
T ss_dssp HHHTC---SSHHHHHHHHHHHH
T ss_pred HHccC---CCHHHHHHHHHHHH
Confidence 77642 35444444444443
No 266
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=64.77 E-value=42 Score=30.06 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=71.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHH
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDV---STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT--YNCFLKVLC 353 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~ 353 (499)
+...+..|+.+-+..++++ .|..++. ...+.+..++... .......+.+.+.+.|..++... -.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~-~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHS-CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHc-CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3344567777655444432 3433322 2223333333222 22222334444566666554321 123344556
Q ss_pred HcCCHHHHHHHHHHHHHCCCCc---ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWP---SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
..|..+.+..+++. .|..+ |..-.+.|..+ ++.|+.+ +.+.+.+.|..+|..+ .+ ...++.|+.+
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~--~L-~~A~~~~~~~- 315 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD--LV-MTARRNYDHS- 315 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC--HH-HHHHHTTCHH-
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC--HH-HHHHHcCCHH-
Confidence 77887766655432 23222 22223344443 4566654 4455567777776543 33 3334567654
Q ss_pred HHHHHHHHHHCCCCCCH
Q 036198 431 ACFLLEEVVNKGLKLPY 447 (499)
Q Consensus 431 a~~~~~~m~~~~~~p~~ 447 (499)
+++.+++.|-.||.
T Consensus 316 ---iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 ---LVKVLLSHGAKEDF 329 (337)
T ss_dssp ---HHHHHHHTTCCC--
T ss_pred ---HHHHHHHCcCCCCC
Confidence 45556677766664
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.75 E-value=30 Score=27.52 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcCh-------hhHHHHHHHHHhcCCchHHHHHHHHHhHCC--CCCCHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEV-GCWPSV-------QTYNMLISMYFELGEPDGAFETWHEMDKRG--CAQDVD 413 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~ 413 (499)
++-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++.+|...|+...+.. +.-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566777788888888777775532 122331 255667777888888888888888754321 110111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
++..+ ........ ......+...--.+-.+|.+.|++++|+.+++.+.
T Consensus 102 ~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11111 00000000 01122334444557788899999999999888763
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.46 E-value=59 Score=26.76 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC
Q 036198 355 NKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 410 (499)
.+...++..+|..|...|+--. ...|......+...|++.+|.++|+.-.+.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677778888777665433 4456666777777788888888888777776666
No 269
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.87 E-value=21 Score=29.84 Aligned_cols=53 Identities=15% Similarity=-0.031 Sum_probs=23.7
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVD---TYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
+...+..|+.+-+..+++ .|..++.. -. .-+...++.|+.+-+..+++...+.
T Consensus 181 L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLE----AGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 344455666654444433 34433321 11 2233445667776666555544433
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.32 E-value=33 Score=24.49 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
...++|..+-+.+...+. ....--+-+..+...|++++|..+.+.+ ..||...|-++ +-.+.|-.+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 356778777777776543 2222223345677899999999887655 37888888766 356889999999888
Q ss_pred HHHHhhcChhHH
Q 036198 471 DHMRKFYNPVIA 482 (499)
Q Consensus 471 ~~m~~~~~~~~~ 482 (499)
.++...+.+...
T Consensus 92 ~~la~sg~p~~q 103 (115)
T 2uwj_G 92 AGLGGSSDPALA 103 (115)
T ss_dssp HHHHTCSSHHHH
T ss_pred HHHHhCCCHHHH
Confidence 888887776554
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.62 E-value=48 Score=24.98 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 036198 346 NCFLKVLCDNKNGDEALRLYGRM 368 (499)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m 368 (499)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44455555555555555555554
No 272
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.32 E-value=9.6 Score=32.07 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=25.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 036198 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKF--DSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
...+..|+.+-+..+ .+.|..++.... .+.+....+.|+.+-+.-+++..
T Consensus 182 ~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 182 HWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 334456776544444 444555442211 13344556778877666555543
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.36 E-value=51 Score=24.85 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCC
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN--GDEALRLYGRMIEVGC 373 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 373 (499)
..++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 44555566666666666666665421111 12223333334433321 2445555555555443
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.26 E-value=1.1e+02 Score=27.66 Aligned_cols=169 Identities=12% Similarity=0.133 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHhhHHHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK----FLEEMGNKGYPPDIVTYNCFL 349 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~li 349 (499)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +++...+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44555666777777777776654322 22344455544433 335555667777777777777
Q ss_pred HHHHHcCCHH-HHHHHHHHHHH----CC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 350 KVLCDNKNGD-EALRLYGRMIE----VG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 350 ~~~~~~g~~~-~a~~~~~~m~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
..+.....-+ .-..+.+++++ .| ..-|......+...|.+.+++.+|+.-|- . |-.+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7766554322 22334444443 12 11234445556666677777666666552 1 2222334443333333
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
...+... .++...-.+ +--|.-.|+...|..+++...+.
T Consensus 178 ~~~~~~~--------------e~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARA-VLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHH
Confidence 3222211 112222223 33466788999998887776653
No 275
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=56.89 E-value=0.19 Score=47.62 Aligned_cols=204 Identities=10% Similarity=0.063 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
.+..|+.|..+.. +.+...+|.+-|= -.-|...|..+|.+..+.|.+
T Consensus 53 ~p~VWs~LgkAqL----~~~~v~eAIdsyI-----------------------------kA~Dps~y~eVi~~A~~~~~~ 99 (624)
T 3lvg_A 53 EPAVWSQLAKAQL----QKGMVKEAIDSYI-----------------------------KADDPSSYMEVVQAANTSGNW 99 (624)
T ss_dssp CCCCSSSHHHHTT----TSSSCTTTTTSSC-----------------------------CCSCCCSSSHHHHHTTTSSCC
T ss_pred CccHHHHHHHHHH----ccCchHHHHHHHH-----------------------------hCCChHHHHHHHHHHHhCCCH
Confidence 4566888888888 6666665544321 123666899999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~ 273 (499)
++-...+...++. .-++..=+.|+-+|++.++..+.++++ ..|+..
T Consensus 100 edLv~yL~MaRk~------------------------~ke~~IDteLi~ayAk~~rL~elEefl----------~~~N~A 145 (624)
T 3lvg_A 100 EELVKYLQMARKK------------------------ARESYVETELIFALAKTNRLAELEEFI----------NGPNNA 145 (624)
T ss_dssp TTHHHHHHTTSTT------------------------CCSTTTTHHHHHHHHTSCSSSTTTSTT----------SCCSSS
T ss_pred HHHHHHHHHHHHH------------------------hcccccHHHHHHHHHhhCcHHHHHHHH----------cCCCcc
Confidence 9988877665542 113344467999999999987665554 356766
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINS--------------------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
-...+.+-|...|.++.|.-+|..+... .-.-++.||..+-.+|...+.+.-|.-.--.+
T Consensus 146 ~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLni 225 (624)
T 3lvg_A 146 HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI 225 (624)
T ss_dssp CTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHH
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchh
Confidence 6777888888888888887777654321 11346788888888998888776665443333
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
.-. ..-...++..|-+.|-+++.+.+++.-... -......|+-|.-.|++-
T Consensus 226 Ivh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 226 VVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred ccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 322 112233455566777777777777665521 124455666666666654
No 276
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.89 E-value=26 Score=28.35 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCCCC
Q 036198 432 CFLLEEVVNKGLKLP 446 (499)
Q Consensus 432 ~~~~~~m~~~~~~p~ 446 (499)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555444
No 277
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.40 E-value=15 Score=29.83 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=12.3
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKR 202 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~ 202 (499)
+...+..|+.+....++..
T Consensus 9 L~~A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHHHHHc
Confidence 3445667888877777653
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.38 E-value=1.2e+02 Score=27.04 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCcCHHhHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE----CFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
|.++..-|.+.+++++|++++..-.. .+.+.|+... |.-+.+-+.+.+.+++......
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 44555666677777777777643221 1223333333 2233444455566666666666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 036198 313 VLEGMCLAGKVE-EAYKFLEEMG----NKG--YPPDIVTYNCFLKVLCDNKNGDEALRLYG 366 (499)
Q Consensus 313 ll~~~~~~g~~~-~a~~~~~~m~----~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 366 (499)
++..+.....-+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|...|-
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666555432111 1122222222 221 12255667777777888888877776553
No 279
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.22 E-value=73 Score=24.55 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=8.8
Q ss_pred HHHHhcCCchHHHHHHHHHhH
Q 036198 385 SMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~m~~ 405 (499)
-++.+.|++++|.+..+.+.+
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444433
No 280
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=53.91 E-value=88 Score=27.82 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh---hhHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV---QTYNMLISMY 387 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~ 387 (499)
+...+..|+.+-+..++++ .|..++ ....+.+..+... +.......+.+.+.+.|..++. .-.+.| ...
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L-~~a 246 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPL-ILA 246 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH-HHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHH-HHH
Confidence 4445667887665555443 333332 2222333333322 2223333445555666655543 222333 344
Q ss_pred HhcCCchHHHHHHHHHhHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036198 388 FELGEPDGAFETWHEMDKRGCAQD---VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464 (499)
Q Consensus 388 ~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 464 (499)
+..|..+.+..++.. .|..++ ..-.+.|..+ ++.|+.+ +.+.+++.|..++..+ .+....+.|+.+
T Consensus 247 ~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~ 315 (337)
T 4g8k_A 247 VEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS 315 (337)
T ss_dssp HHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH
T ss_pred HHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH
Confidence 566776655544432 233222 2223344333 4557654 4444567787777654 333345667765
Q ss_pred H
Q 036198 465 A 465 (499)
Q Consensus 465 ~ 465 (499)
-
T Consensus 316 i 316 (337)
T 4g8k_A 316 L 316 (337)
T ss_dssp H
T ss_pred H
Confidence 3
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.91 E-value=43 Score=26.19 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC--chHHHHHHHHHhHCCC
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE--PDGAFETWHEMDKRGC 408 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~ 408 (499)
....++.-|...|+.++|.+.++++.... .-...+..++..++-+.++ .+.+..++..+.+.|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34566777777777777777777764211 1112233333444433222 2345555555555443
No 282
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=52.77 E-value=48 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=15.7
Q ss_pred HHHHHHhCCChHHHHHHHHHh
Q 036198 183 LLDALCKCGLVDYAETICKRV 203 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m 203 (499)
.+...++.|+.+....+++.-
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred hHHHHHHhCCHHHHHHHHHhc
Confidence 356677889998888887764
No 283
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=51.15 E-value=44 Score=22.51 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=34.4
Q ss_pred HHhHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 402 EMDKRGCAQDVDTYCVMIDGLFDCS-KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 402 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3455666655543 33444444443 3445666666666666556666666666666666543
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.14 E-value=48 Score=25.88 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCC
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN--GDEALRLYGRMIEVGC 373 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 373 (499)
..++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 44555566666666666666665321111 12223333333433222 2345555555555443
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.75 E-value=81 Score=26.73 Aligned_cols=92 Identities=9% Similarity=-0.065 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCc----ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEV--GCWP----SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
--++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3577888889999998888877642 2221 1122233333333333333445555555 32 455666677778
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 036198 421 GLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.+.+.|+.++|.++|-+....
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHH
Confidence 888888888888888776543
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=50.68 E-value=66 Score=23.04 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 036198 287 RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366 (499)
Q Consensus 287 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 366 (499)
..++|.-+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|.+|.. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34556555555555432 22222222334566677777766655443 466666655544 35566666666665
Q ss_pred HHHHCC
Q 036198 367 RMIEVG 372 (499)
Q Consensus 367 ~m~~~~ 372 (499)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 287
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.19 E-value=18 Score=30.31 Aligned_cols=114 Identities=12% Similarity=-0.069 Sum_probs=50.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh---hHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT--YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ---TYNMLISMYF 388 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~ 388 (499)
+...+..|+.+-+. .+.+.|..++... -.+.+...+..|..+-+ +.+.+.|..++.. -.+ .+...+
T Consensus 115 L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t-~L~~A~ 185 (237)
T 3b7b_A 115 MIWATEYKHVDLVK----LLLSKGSDINIRDNEENICLHWAAFSGCVDIA----EILLAAKCDLHAVNIHGDS-PLHIAA 185 (237)
T ss_dssp HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH----HHHHTTTCCTTCCCTTCCC-HHHHHH
T ss_pred HHHHHHcCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH----HHHHHcCCCCCCcCCCCCC-HHHHHH
Confidence 34445556654433 3334444333211 11233334455665433 3344445443321 122 233334
Q ss_pred hcCCchHHHHHHHHHhHCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQDVDT--YCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
+.|+.+-+ +.+.+.|..++... -..-+...+..|+...+.++.+.+.+
T Consensus 186 ~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 186 RENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55655433 33444454433211 11223334566777777777777664
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.98 E-value=2e+02 Score=28.48 Aligned_cols=323 Identities=10% Similarity=-0.007 Sum_probs=154.5
Q ss_pred chhhHHHHHHHhccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccC--CCchHHHHHhhCCCCCCHHHH-HH
Q 036198 10 TEAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSN--AYDNMEKALDSLGVPLTTDSV-VG 86 (499)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~al~~~~~~~~~~~~-~~ 86 (499)
+...|.....+++.++...+....+.|.. ..-..-..|..+...+. ...++...+..+...+-.+.+ ..
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~l~~--------~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~ 77 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPGLKD--------YPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSR 77 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGGTT--------STTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcC--------CCcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHH
Confidence 34556777777877776655555544311 11122346777777654 334566666666433322222 22
Q ss_pred HHHcc--CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 036198 87 VLQRF--QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ 164 (499)
Q Consensus 87 ~l~~~--~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 164 (499)
-+..+ ..++...+.++. ..+.+...-.....+.. ..|+-..|....+.+-..+...++. =..++..
T Consensus 78 ~l~~l~~~~~w~~~l~~~~------~~p~~~~~~c~~~~A~~----~~G~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~ 145 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSP------EKPGTTEAQCNYYYAKW----NTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSV 145 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCC------SCCSSHHHHHHHHHHHH----HTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHH
T ss_pred HHHHHHhCCCHHHHHHhcc------CCCCCHHHHHHHHHHHH----HcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHH
Confidence 23323 344554444332 12234444444556666 6777777777777766666432222 1222222
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhH----HHH---HHHHHHHHHHcCCCCCHH--
Q 036198 165 YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY----NIL---GMQTLEEMIQMGHAPDNF-- 235 (499)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~----~~l---a~~~~~~m~~~g~~p~~~-- 235 (499)
+.+. | ..+....-.-+......|+...|..+...+. ++.... ..+ ...+...... ..|+..
T Consensus 146 ~~~~---g-~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~----~~~~~~a~~~~al~~~p~~~~~~~~~--~~~~~~~~ 215 (618)
T 1qsa_A 146 WRAS---G-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNTVLTFART--TGATDFTR 215 (618)
T ss_dssp HHHT---T-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGGHHHHHHH--SCCCHHHH
T ss_pred HHHC---C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC----HHHHHHHHHHHHHHhChHhHHHHHhc--cCCChhhH
Confidence 2211 1 1233223333455556666666666655441 222111 111 0000110001 122222
Q ss_pred -HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 236 -TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV----ALVQNDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 236 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
.+...+.-+.+. +.+.|...+....+.. ..+......+-. .....+...++...+...... ..+....
T Consensus 216 ~~~~~~~~rlar~-d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 288 (618)
T 1qsa_A 216 QMAAVAFASVARQ-DAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHHHH-CHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHH
Confidence 112223333333 6788888888776543 123333222222 222334244555555554433 2333334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.-.+....+.|+++.|...|..|...... .....-=+..++...|+.++|..+|..+..
T Consensus 289 e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 289 ERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44455556678888888888877653221 222223344566677888888888877653
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.76 E-value=1.1e+02 Score=25.21 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=46.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 307 (499)
.+...++.++|..|..+|. ..--+.-|-.....+...|++.+|.++|+.-.+.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~I--G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGI--GTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTS--STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4457789999999988875 3445677888888888899999999999998888777743
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.54 E-value=2.1e+02 Score=28.43 Aligned_cols=116 Identities=7% Similarity=-0.075 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHCCCCcChhhHHHHHH----HHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLIS----MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
.+.+.|...+....+... .+......+-. .....+...++...+....... ++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 377888888888765432 23332222222 2233343556666666654432 3443344444545577999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 432 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
...|+.|...... ...-..-+.+++...|+.++|..+|+.+-+
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999888653221 233334556778889999999999999876
No 291
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=49.34 E-value=68 Score=29.02 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKR 202 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (499)
|..-+ +.+...+..|+.+-+..+++.
T Consensus 17 d~~g~-t~L~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 17 DDENM-EKIHVAARKGQTDEVRRLIET 42 (364)
T ss_dssp CHHHH-HHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 43334 444555667888777776654
No 292
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.86 E-value=1.6e+02 Score=26.55 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCcCHHhHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME----ECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
|.++..-|.+.+++++|++++..-.. .+.+.|+.. -+.-+++-+.+.++++|......
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~------------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ------------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34455567777888888776643211 122223322 23333344445566666666666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHh----CC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 313 VLEGMCLAGKVE-EAYKFLEEMGN----KG--YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 313 ll~~~~~~g~~~-~a~~~~~~m~~----~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
++..+.....-+ .-..+.+.+.+ .| ..-|+.....+...|.+.+++.+|...|- .|-.++...|..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 665555444211 11222222221 11 22255566667777888888888777662 132333356655554
Q ss_pred HHHhcC
Q 036198 386 MYFELG 391 (499)
Q Consensus 386 ~~~~~~ 391 (499)
-+...+
T Consensus 176 ew~~~~ 181 (336)
T 3lpz_A 176 EWYKQD 181 (336)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 444433
No 293
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=47.77 E-value=2.7e+02 Score=29.26 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=68.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcChhhHH--HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHH---HHHHHHHhCC
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYN--MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC---VMIDGLFDCS 426 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g 426 (499)
++-.|+.+....++..+.+.. +..+.. .+.-++...|+.+.+..+++.+... ..|. .-|. ++.-+|+..|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCC
Confidence 445577777777777766532 223333 3333344678888888888887764 1222 2233 2334566778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+.+.+
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~V 628 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHV 628 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHH
Confidence 8777777887776542 11222222222333445666666666666655555443
No 294
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=47.62 E-value=2.7e+02 Score=29.20 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 346 NCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
..++.+++...+.+...++++...
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 334444444444444444444433
No 295
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=47.02 E-value=35 Score=28.47 Aligned_cols=208 Identities=12% Similarity=0.081 Sum_probs=98.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGM 317 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~ 317 (499)
.+...+..|+.+-+. .+.+.|......+...++ .+...+..|+.+-+. .+.+.|..++... -...+...
T Consensus 14 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 14 PLHAAAEAGHVDICH----MLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp HHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHH----HHHTTTCCCCCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHHHHH----HHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHH
Confidence 455566677766444 444445221122222222 334445667765444 4445554433211 12234455
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh---hHHHHHHHHHhc
Q 036198 318 CLAGKVEEAYKFLEEMGNKG-YPP---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ---TYNMLISMYFEL 390 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~ 390 (499)
+..|+.+-+..++ +.| ..+ +....+. +...+..|+.+-+. .+.+.|..++.. -.+. +...+..
T Consensus 85 ~~~~~~~~~~~Ll----~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 154 (237)
T 3b7b_A 85 AKKGHYEVVQYLL----SNGQMDVNCQDDGGWTP-MIWATEYKHVDLVK----LLLSKGSDINIRDNEENIC-LHWAAFS 154 (237)
T ss_dssp HHTTCHHHHHHHH----TTTCCCTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCH-HHHHHHH
T ss_pred HHcCCHHHHHHHH----hCCCCCcccCCCCCCCH-HHHHHHcCCHHHHH----HHHHCCCCCCccCCCCCCH-HHHHHHC
Confidence 6667765544444 443 222 2222233 34445667765444 444455444322 2222 3333455
Q ss_pred CCchHHHHHHHHHhHCCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVD---TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRK--FDSYLMQLSVIGDLGA 465 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~ 465 (499)
|+.+ +++.+.+.|..++.. -.+. +...++.|+.+-+ +.+.+.|..++... -.+-+......|+...
T Consensus 155 ~~~~----~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 155 GCVD----IAEILLAAKCDLHAVNIHGDSP-LHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp CCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred CCHH----HHHHHHHcCCCCCCcCCCCCCH-HHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 6654 445555555544322 1222 3334456766544 44455665544221 1234444567788888
Q ss_pred HHHHHHHHHh
Q 036198 466 IHKLSDHMRK 475 (499)
Q Consensus 466 a~~~~~~m~~ 475 (499)
+.++.+.+.+
T Consensus 226 ~~~l~~~l~d 235 (237)
T 3b7b_A 226 ALQMSKALQD 235 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 8888877764
No 296
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=46.36 E-value=1e+02 Score=24.65 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCcC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV---TYNCFLKVLCD-NKNGDEALRLYGRMIEVGCWPS 376 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~ 376 (499)
.+...+..|..+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3444445555555555666666666555432 12223222221 1223333455555555554443
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.23 E-value=64 Score=25.17 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 306 (499)
+++.++|..|..+|. ..--+.-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~I--G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGI--GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTT--TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 347777777777764 234456667777777777888888888877777766663
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.76 E-value=14 Score=31.63 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=12.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 036198 455 MQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
...++.|+.+-+.-++++-...
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCCc
Confidence 3345667777666666655443
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.13 E-value=68 Score=24.67 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=16.8
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
.+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444445555555544443344444444444444444
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.57 E-value=73 Score=25.21 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 307 (499)
+++.++|..|..+|. ..--+.-|-.....+...|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~I--G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGI--GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTS--STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346677888877774 2344566677777777788888888888877777766654
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.13 E-value=1.5e+02 Score=25.13 Aligned_cols=87 Identities=11% Similarity=0.020 Sum_probs=43.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 036198 279 IVALVQNDRMEECFSLLGHMINS--GCLP----DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 352 (499)
++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45556666666666666655432 1111 111222233333333333444444555533 34455566666777
Q ss_pred HHcCCHHHHHHHHHHH
Q 036198 353 CDNKNGDEALRLYGRM 368 (499)
Q Consensus 353 ~~~g~~~~a~~~~~~m 368 (499)
.+.|+.++|.++|=+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777776544
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=43.22 E-value=96 Score=24.86 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=12.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcC
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~ 264 (499)
+...+..|..+.-.++.+.+.+.|
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~G 65 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKG 65 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcchHHHHHHHHHHCC
Confidence 334444455544455555555555
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.10 E-value=58 Score=25.80 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC
Q 036198 361 ALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 410 (499)
+..+|..|...|+--. ...|......+...|++.+|.++|+.-.+.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444443222 2233334444444444444444444444444444
No 304
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.69 E-value=42 Score=31.42 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHH
Q 036198 131 KAKQFRLVCSMLDY 144 (499)
Q Consensus 131 ~~~~~~~a~~~~~~ 144 (499)
..|+.+.+..+++.
T Consensus 23 ~~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 23 FMGHLPIVKNLLQR 36 (437)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHc
Confidence 57887776666653
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.99 E-value=70 Score=24.24 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=27.0
Q ss_pred HHHCCCCcChhhHHHHHHHHHhcC-CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 368 MIEVGCWPSVQTYNMLISMYFELG-EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 368 m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
+.+.|.+++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444554443322 2333333333 445566666666555444455554444444444443
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.06 E-value=1.3e+02 Score=23.50 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC
Q 036198 361 ALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 410 (499)
+..+|..|...|+--. ...|......+...|++.+|.++|+.-.+.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555554443222 2334444444445555555555555555544444
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.00 E-value=86 Score=24.26 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=17.7
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 36 l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 36 LYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333444445555555544433344444444444444444
No 308
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.58 E-value=78 Score=26.15 Aligned_cols=88 Identities=14% Similarity=0.007 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc---------ChhhHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT--YNCFLKVLCDNKNGDEALRLYGRMIEVGCWP---------SVQTYN 381 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------~~~~~~ 381 (499)
.+...+..|+.+-+.-++ +.|..++... -.+.+...+..|+.+.+..+++.+.+.|..+ |..-.+
T Consensus 124 ~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t 199 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRLLI----EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT 199 (232)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC
Confidence 344455566655444433 4454443221 1233445567788877777777777766432 233333
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhH
Q 036198 382 MLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
.+ ...++.|+.+-+.-+++.-..
T Consensus 200 pl-~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 200 PF-KLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HH-HHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-HHHHHcCCHHHHHHHHhcCcc
Confidence 33 334556777666666655443
No 309
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.88 E-value=1.6e+02 Score=27.31 Aligned_cols=236 Identities=11% Similarity=0.106 Sum_probs=103.8
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH-------HHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHhHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------GMQTLEEMIQMGHAPDNFT--YNTAIDTFCKARMVTEAA 254 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l-------a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~ 254 (499)
+...++.|+.+.+..+++.-......+...++.+ -.++++.+.+.|..++... -.+.+...+..|+.+-
T Consensus 117 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~-- 194 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI-- 194 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH--
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH--
Confidence 4445566777766666554222111122222222 3455666666666554321 1123445556666543
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHHHhcCCHHHHHHHHHH
Q 036198 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 255 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
++.+.+.|.....++...++ .+...+..|+.+-+.. +.+.|..++... -...+...+..|..+-+.-+
T Consensus 195 --v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L--- 264 (437)
T 1n11_A 195 --VKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARS----LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL--- 264 (437)
T ss_dssp --HHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH---
T ss_pred --HHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH---
Confidence 34444454221222222222 2334456666554443 344443332211 11233445566766544443
Q ss_pred HHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh---hhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 333 MGNKGYPPDI---VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV---QTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 333 m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
.+.|..++. ...+. +...++.|..+-+..+++ .|..++. .-.+.|. ..+..|+.+-+ +.+.+.
T Consensus 265 -l~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~ 333 (437)
T 1n11_A 265 -LSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIK----HGVMVDATTRMGYTPLH-VASHYGNIKLV----KFLLQH 333 (437)
T ss_dssp -HTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCCHHH-HHHHSSCSHHH----HHHHHT
T ss_pred -HhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh----CCccCCCCCCCCCCHHH-HHHHcCcHHHH----HHHHhc
Confidence 344433322 22223 333446677665544443 3433322 2223333 33456776544 344445
Q ss_pred CCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 036198 407 GCAQDV---DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY 447 (499)
Q Consensus 407 ~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 447 (499)
|..++. .-.+.|..+ +..|..+ +++.+.+.|..|+.
T Consensus 334 gad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 334 QADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp TCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred CCCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCC
Confidence 544432 222333333 3456654 44445566766653
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.86 E-value=1.2e+02 Score=27.47 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777777777777777664
No 311
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.84 E-value=78 Score=24.52 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHCCCCcChhhHHHHHHHHHhcC-CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 368 MIEVGCWPSVQTYNMLISMYFELG-EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 368 m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4444544443322 2233333333 344555555555555444455554444444444443
No 312
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.79 E-value=1.1e+02 Score=21.64 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV-----VNKGLKLPYRKFDSY 453 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~l 453 (499)
.|.++.+++...|+.|+......++..|...+- + +.++..+. ...|..|+..+++.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 356666666666676766666666666655442 1 22222221 234566666655543
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.54 E-value=16 Score=31.41 Aligned_cols=194 Identities=9% Similarity=-0.043 Sum_probs=93.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcC---------CC
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPT----AKTYAIMIVALV--QNDRMEECFSLLGHMINSG---------CL 304 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~----~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~ 304 (499)
.+...++.|+.+....+++.+.+.+......+ ..-.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 45556678999988888888777663211111 112334444432 4577666666665543311 11
Q ss_pred c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh----------------HHHHHHHHHHcCCHHHHHHHHHH
Q 036198 305 P-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT----------------YNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 305 ~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
. +..-. +.+...+..|+.+-+.-++ +.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 88 ~~d~~g~-t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 88 DVYYRGQ-TALHIAIERRCKHYVELLV----EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp CSSEESB-CHHHHHHHTTCHHHHHHHH----HTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccCCC-CHHHHHHHcCCHHHHHHHH----hCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 0 11122 2344556678766544444 4555554432 22344445567776555444431
Q ss_pred HHHCCCCcC---hhhHHHHHHHHHhcCCch----HHHHHHHHHhHCCCCC----------CHHHHHHHHHHHHhCCCHHH
Q 036198 368 MIEVGCWPS---VQTYNMLISMYFELGEPD----GAFETWHEMDKRGCAQ----------DVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 368 m~~~~~~~~---~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~ 430 (499)
. ..|..++ ..-.+.|..++....... ...++++.+.+.|..+ |..-.+.+ ...+..|+.+-
T Consensus 163 ~-~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~ 240 (260)
T 3jxi_A 163 G-HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGKIGI 240 (260)
T ss_dssp S-SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHH
T ss_pred c-ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCCHHH
Confidence 0 0444333 333445555543322211 1234444444443222 22223333 33456688777
Q ss_pred HHHHHHHHHH
Q 036198 431 ACFLLEEVVN 440 (499)
Q Consensus 431 a~~~~~~m~~ 440 (499)
+..++++-..
T Consensus 241 v~~Ll~~g~~ 250 (260)
T 3jxi_A 241 FQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhCCC
Confidence 7777766543
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.74 E-value=62 Score=24.90 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=13.8
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 425 (499)
.-.|.++++.+.+.+...+..|.-.-+..+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 334455555544443333444433333333333
No 315
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=35.65 E-value=2.7e+02 Score=25.73 Aligned_cols=150 Identities=9% Similarity=-0.010 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC--CCCChhhHHHH--------------------HHHHHHHHHHcCCCCCHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL--------------------GMQTLEEMIQMGHAPDNFT 236 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~~~~~l--------------------a~~~~~~m~~~g~~p~~~~ 236 (499)
+...|...|.+.|+.++..+++.....- ..|-..|-..+ ..+.+++.... ..+
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~r~ 95 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE-----KRT 95 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-----HHH
Confidence 5667788888889888888887776431 11111111111 12222222211 111
Q ss_pred H------HHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcC
Q 036198 237 Y------NTAIDTFCKARMVTEAADLFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS--GCLPD 306 (499)
Q Consensus 237 ~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~ 306 (499)
| ..++..|...|++.+|.+++..+.+.-... ..--...|..-+..|...+++.++...+...... .+.++
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 2 256677778888888888887777642110 0011345666677777788888888777766532 22233
Q ss_pred HHhHHHH----HHHHH-hcCCHHHHHHHHHHH
Q 036198 307 VSTYKEV----LEGMC-LAGKVEEAYKFLEEM 333 (499)
Q Consensus 307 ~~~~~~l----l~~~~-~~g~~~~a~~~~~~m 333 (499)
+.....+ ...+. ..+++..|...|-+.
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 3322211 12234 677777777766554
No 316
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.59 E-value=2.4e+02 Score=25.09 Aligned_cols=171 Identities=9% Similarity=-0.053 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC-C-CCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh-HHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNK-V-KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT-EAAD 255 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~ 255 (499)
.|.++..-|.+.+++++|.+++..-... . .-...+-.-|+.-+++-..+.+.+++......++..+.....-+ .-.+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~ 114 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKD 114 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHH
Confidence 3455566678888888888876552210 0 00112222225556677777889999888888888876643211 1122
Q ss_pred HHHHH----HHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc---CCHHHHHH
Q 036198 256 LFEFM----RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA---GKVEEAYK 328 (499)
Q Consensus 256 ~~~~m----~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~ 328 (499)
+.+++ .+.|.. ..-+......+...|.+.+++.+|...|- .|-.-+...+..++--+... |...++
T Consensus 115 fi~~ai~WS~~~g~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~-- 187 (312)
T 2wpv_A 115 VITGMNNWSIKFSEY-KFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTV-- 187 (312)
T ss_dssp HHHHHHHHHHHTSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--
T ss_pred HHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchH--
Confidence 33333 333311 22366777888888888888888887664 12112345555555444443 443332
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
+...-.+++. |.-.|+...|..+|+...
T Consensus 188 ------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 188 ------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp ------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 2222222333 445688888888877654
No 317
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.51 E-value=1.8e+02 Score=23.43 Aligned_cols=186 Identities=10% Similarity=-0.018 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
.++...+....... +...-...+..+.+.+. ..+...+..+... ++...-...+.++.+.++.+....+.
T Consensus 18 ~~~~~~L~~~L~~~------~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~ 87 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD------SYYVRRAAAYALGKIGD-ERAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLI 87 (211)
T ss_dssp GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred HhHHHHHHHHHcCC------CHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHH
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 410 (499)
+.+... +..+-...+.++.+.++.+....+.+.+.. ++..+-...+.++.+.+..+....+...+.+.
T Consensus 88 ~~l~~~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~---- 155 (211)
T 3ltm_A 88 KALKDE----DGWVRQSAAVALGQIGDERAVEPLIKALKD----EDWFVRIAAAFALGEIGDERAVEPLIKALKDE---- 155 (211)
T ss_dssp HHTTCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----
T ss_pred HHHcCC----CHHHHHHHHHHHHHhCcHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC----
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036198 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
+...-...+.++.+.+. .++...+..+.+. ++...-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp SHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.50 E-value=1.1e+02 Score=25.72 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 306 (499)
+++.++|..|..+|. ..--..-|-.....+...|++.+|..+|..-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~I--G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHI--GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTC--STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCc--chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 567788888888775 244566777777788888888888888888887776663
No 319
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=31.96 E-value=3.1e+02 Score=25.39 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 310 YKEVLEGMCLAGK---VEEAYKFLEEMGNKG----YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 310 ~~~ll~~~~~~g~---~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
-..++...|..|+ .+.|.+.|+.....+ ++||.... +...- .+..++-..+++..... .+..--..
T Consensus 200 R~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~--~~~~~~~~~l~~~y~~s---~~~~ek~~ 272 (419)
T 3rjo_A 200 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVG--AQSTEGWDFLYSKYQFS---LSSTEKSQ 272 (419)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHH--TTSHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEeee--eCCHHHHHHHHHHHhcC---CCHHHHHH
Confidence 3456677788887 457777888766542 45554321 11111 12233344555555553 34455677
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhC-CCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHH
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDC-SKVEEACFLLEE----VVNKGLKLPYRKFDSYLMQ 456 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~-g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~ 456 (499)
++.+++...+.....++++......+ ++. .... ++.+.+.. ...+.|.+.+.+ +.+. +.+....+..++.+
T Consensus 273 ll~aL~~s~d~~ll~~~L~~~l~~~~ir~q-D~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~ 349 (419)
T 3rjo_A 273 IEFALCRTQNKEKLQWLLDESFKGDKIKTQ-EFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMG 349 (419)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTSSSCGG-GHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCchh-HHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHH
Confidence 88888888888888888887776543 332 2222 33333332 234555555542 3222 22334566677766
Q ss_pred HHhc
Q 036198 457 LSVI 460 (499)
Q Consensus 457 ~~~~ 460 (499)
....
T Consensus 350 ~~~~ 353 (419)
T 3rjo_A 350 TTNQ 353 (419)
T ss_dssp TTTT
T ss_pred Hhhc
Confidence 5543
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.36 E-value=1.3e+02 Score=23.62 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=28.9
Q ss_pred hcCCchHHHHHHHHHhHCCCCC--CHHHHHHHHH-HH-----HhCCCHHHHHHHHHHHHH
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQ--DVDTYCVMID-GL-----FDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~~-----~~~g~~~~a~~~~~~m~~ 440 (499)
+.|++-+|-++|+..=...-.+ ....|..||. .. .+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777776664332233 3445555555 21 135667777777766654
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.35 E-value=1.6e+02 Score=26.55 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
...++.-|...|+.++|.+.++++.... .. ...+...+..++-+.. .-+.+..++..+.+.|+-+.. .+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~---~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~----~~~~ 85 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS---LL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA----QYYQ 85 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG---GH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH----HHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc---cH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH----HHHH
Confidence 5778888999999999999998874211 00 1112222222222211 234555666666655433222 2222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA----LRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
++ ....+.++++.-. .|....+-.-+-+.+-....-.. ..+.+.+...| ........++..+.+..
T Consensus 86 Gf------~~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~ 155 (339)
T 1ug3_A 86 GL------YEILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSM 155 (339)
T ss_dssp HH------HHHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred HH------HHHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHc
Confidence 22 1222223333221 35555555544444433332222 22333334444 23455566677777777
Q ss_pred CchHHHHHHHH
Q 036198 392 EPDGAFETWHE 402 (499)
Q Consensus 392 ~~~~a~~~~~~ 402 (499)
..+.+.++|..
T Consensus 156 g~~~l~~~~~~ 166 (339)
T 1ug3_A 156 GPKKVGTLWRE 166 (339)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77777777774
No 322
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.70 E-value=1.4e+02 Score=26.88 Aligned_cols=219 Identities=10% Similarity=0.029 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
|..-++. +...+..|+.+.+..+++ .|......+..-++ .+...+..|+.+-+. .+.+.|..++...-..
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCT-ALHLACKFGCVDTAK----YLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCC-HHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBC
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCccccCCCCCc-HHHHHHHcCCHHHHH----HHHHCCCCccccCCCC
Confidence 4444444 444556677766655554 44221122222223 334445566665444 4444444444322233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------------hhHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--------------------VTYNCFLKVLCDNK--NGDEALRLYGRMIE 370 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~ 370 (499)
.+...+..|+.+-+..+++.....|..++. .-.+. +...+..| ..+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll~~--- 162 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILVQL--- 162 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHHHc---
Confidence 455566778888887777765544444332 12233 33445566 55544444443
Q ss_pred CCCCcCh---hhHHHHHHHHHhcCCchHHHHHHHHHhH-CCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 036198 371 VGCWPSV---QTYNMLISMYFELGEPDGAFETWHEMDK-RGCAQ---DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443 (499)
Q Consensus 371 ~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 443 (499)
|..++. .-.+.|.. .+..|+.+-+..+++.-.+ .+..+ +..-.+.|. ..+..|..+ +++.+.+.|.
T Consensus 163 -ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~ga 235 (364)
T 3ljn_A 163 -GASPTAKDKADETPLMR-AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVEMGI 235 (364)
T ss_dssp -TCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTC
T ss_pred -CCCCcccCCCCCCHHHH-HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCC
Confidence 443332 22334443 3456777655555554222 00001 112222333 334567655 3444455665
Q ss_pred CCCHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 036198 444 KLPYRKF--DSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 444 ~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.++.... .+-+...+..|+.+-+.-+++.
T Consensus 236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 5543211 1223334456777766666554
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.49 E-value=1.1e+02 Score=26.48 Aligned_cols=194 Identities=8% Similarity=-0.001 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHHHhcCCHHHHHHHHH
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
.++++.+.+.|. .++...-.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+.-+++
T Consensus 44 ~~~v~~Ll~~g~---~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 116 (285)
T 3kea_A 44 VRLVCTLLNAGA---LKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116 (285)
T ss_dssp HHHHHHHHHTTG---GGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCC---CCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 777888888773 33322223344445556665433 34444555443221 1123444556677665554444
Q ss_pred HHHhCCCCCCHh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC
Q 036198 332 EMGNKGYPPDIV---TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 332 ~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 407 (499)
. |..++.. .+.+.+...+..|..+-+..+ .+.|..+ +...-...+...+..|+.+-+.-+++.-.+-.
T Consensus 117 ~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 117 K----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp H----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred c----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 3 4433322 223445555666776544433 3334322 22122333444456677766665555533322
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.. +..-.+..+...+..|+. ++++.+.+.|..|+..... -...|+.+-+.-+++.
T Consensus 189 ~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 189 TN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEK 243 (285)
T ss_dssp TT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHH
T ss_pred cc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHc
Confidence 21 212222223333344553 4455556677776655421 1345666655555544
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.31 E-value=84 Score=26.31 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC
Q 036198 360 EALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410 (499)
Q Consensus 360 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 410 (499)
.+..+|..|...|+--. ...|......+...|++.+|.++|+.-.+.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34445555554443222 2334444444444555555555555544444444
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.20 E-value=2e+02 Score=22.61 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPP--DIVTYNCFLK-V-----LCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 370 (499)
...|++-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888887765455 4556666766 2 2357888888888887754
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.12 E-value=1.1e+02 Score=24.14 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHH-HHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCCCCHHHHHHHHHHHHhCCCH
Q 036198 359 DEALRLYGR-MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 359 ~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~ 428 (499)
+.+.+-+.+ +.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 334433333 33446555443 233445555555566666666666655 4445555555555555555544
No 327
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=28.77 E-value=1.9e+02 Score=21.99 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=39.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHHc
Q 036198 280 VALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT--YNCFLKVLCDN 355 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~ 355 (499)
...+..|+.+-+.. +.+.|..++... -...+...+..|+.+-+.-++ +.|..++... -.+.+...+..
T Consensus 74 ~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~ 145 (167)
T 3v31_A 74 SLACSKGYTDIVKM----LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL----ESGADPTIETDSGYNSMDLAVAL 145 (167)
T ss_dssp HHHHHHTCHHHHHH----HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHH----HHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHc
Confidence 33445566554433 334444333221 112344445667765544444 4454443221 12334455567
Q ss_pred CCHHHHHHHHHHHHH
Q 036198 356 KNGDEALRLYGRMIE 370 (499)
Q Consensus 356 g~~~~a~~~~~~m~~ 370 (499)
|..+-+.-+.+...+
T Consensus 146 ~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 146 GYRSVQQVIESHLLK 160 (167)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 787777777666554
No 328
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.02 E-value=3.1e+02 Score=24.02 Aligned_cols=107 Identities=9% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcC-CCCChhhHHHH-------HHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHh
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-------GMQTLEEMIQMGHAPDNFT--YNTAIDTFCKARMVT 251 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~~~~~l-------a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~ 251 (499)
..+...++.|+.+....++...... ...|....+.+ -.++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 105 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE 105 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHH
Confidence 3445556678877777766542221 12222223333 3455666666666553321 123344455667655
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 293 (499)
-+. .+.+.|.....++...++. +...+..|+.+-+..
T Consensus 106 iv~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~ 142 (351)
T 3utm_A 106 VTE----LLLKHGACVNAMDLWQFTP-LHEAASKNRVEVCSL 142 (351)
T ss_dssp HHH----HHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHH
T ss_pred HHH----HHHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH
Confidence 443 3444452212222222222 333445666554433
No 329
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.55 E-value=5.5e+02 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 036198 276 AIMIVALVQNDRMEECFSLLGHM 298 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m 298 (499)
..++.+++...+.....++++..
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~ 784 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYT 784 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Confidence 34444444444444444444443
No 330
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.41 E-value=1.4e+02 Score=19.87 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHCCCCcChhhHHHHHHHHHhcC-CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 368 MIEVGCWPSVQTYNMLISMYFELG-EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 368 m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334454444333 22333333332 34445555555555444444445444444444433
No 331
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.35 E-value=72 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=25.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444555556666666666666555555555555555555554
No 332
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.30 E-value=1.3e+02 Score=24.72 Aligned_cols=87 Identities=11% Similarity=-0.078 Sum_probs=49.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------CHhhHHH
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVST--YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP---------DIVTYNC 347 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---------~~~~~~~ 347 (499)
+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..+ |....+.
T Consensus 125 L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp 200 (232)
T 2rfa_A 125 LSFAACVGSEEIV----RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200 (232)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH
T ss_pred HHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH
Confidence 3344455665433 34445555443221 1234566677888888877888887776533 3333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
+...++.|+.+-+..+++.-..
T Consensus 201 -l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 201 -FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp -HHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHhcCcc
Confidence 4444567887777777766544
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.95 E-value=2.2e+02 Score=21.80 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=35.3
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
.+.+.|.+++. --..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 35556665433 33345555555566667777777777665555666666666666666643
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.48 E-value=70 Score=24.38 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444555555666666666666555555555555555555554
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.34 E-value=1.5e+02 Score=24.26 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH---HhHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV---STYKEVLE 315 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~ 315 (499)
..+...++.|+++....+++.-...- ..++...++. +...+..|+.+-+ +.+.+.|..++. ...+ .+.
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~ 78 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLA---TRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLH 78 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGG---GCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhh---hcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHH
Confidence 34566677788877777776532221 1223333333 3334455655433 344444544432 2222 334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDI---VTYNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~ 365 (499)
..+..|+.+-+ +.+.+.|..++. ...+ .+...+..|+.+-+..++
T Consensus 79 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 79 IAASAGXDEIV----KALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp HHHHHTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCHHHHH----HHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 44555665533 334444544332 2222 333444566655444333
No 336
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.28 E-value=3.9e+02 Score=24.28 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKN 205 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (499)
....+|.-|...|+.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 356788888899999999999998864
No 337
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.53 E-value=1.6e+02 Score=21.92 Aligned_cols=48 Identities=15% Similarity=-0.001 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 455555555666677777777777665556666666666666666544
No 338
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.38 E-value=2e+02 Score=25.53 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCC
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN--GDEALRLYGRMIEVGC 373 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 373 (499)
..++.-|...|+.++|.+.++++....+. ...+..++..++-+.++ .+.+.+++..+.+.|+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 34556666666777776666666422111 12233333344433322 3445566666665554
No 339
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.44 E-value=61 Score=20.50 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 290 ECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
+|.+.|.+|++..-.++..+|...|+..
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 3444444444333233334444444444
No 340
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.18 E-value=2e+02 Score=20.33 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 036198 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322 (499)
Q Consensus 291 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 322 (499)
+.++.+++...|+.|+..+...++..|...+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 44555556666666666666666666655553
No 341
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.08 E-value=98 Score=25.33 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=14.7
Q ss_pred HHHHHHhCCChHHHHHHHHHh
Q 036198 183 LLDALCKCGLVDYAETICKRV 203 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m 203 (499)
.+...++.|+.+....+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 355667788888877777654
No 342
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.07 E-value=4.5e+02 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=17.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
..--..++.+++...+.+...++++......
T Consensus 267 ~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 267 STEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 3344556666666666666666666555433
No 343
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.88 E-value=60 Score=27.87 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCC----CCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISS----PTAKTYAIMIVALV--QNDRMEECFSLLGHM 298 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m 298 (499)
+.+...++.|+.+.+..+++...+.+..... .+..-++.|..++. +.|+.+-+..+++.-
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3455556788988888888877766632111 13333445555543 246666666555553
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.87 E-value=2e+02 Score=20.15 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
..++|.++++.+..+|- .+|..++.++...|.
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCc
Confidence 34444445544444432 144444444444443
No 345
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.84 E-value=2.5e+02 Score=21.30 Aligned_cols=60 Identities=17% Similarity=0.052 Sum_probs=33.1
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44556554432 2334444445555556677777776655445555555555666655543
No 346
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.27 E-value=62 Score=24.65 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHHH
Q 036198 317 MCLAGKVEEAYKFLEE 332 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~ 332 (499)
.+..|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555544444444
No 347
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.71 E-value=1.1e+02 Score=18.76 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGD--LGAIHKLSDHM 473 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m 473 (499)
+.++.+.+.|+.+. ....|+.+.|+ ++.|.+.+.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 34455555565432 23345555666 77777776666
No 348
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.37 E-value=1.3e+02 Score=23.11 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=7.0
Q ss_pred HHHhcCCHhHHHHHH
Q 036198 243 TFCKARMVTEAADLF 257 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~ 257 (499)
..++.|+.+.+..++
T Consensus 14 ~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 14 EAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHTCHHHHHHHC
T ss_pred HHHHhCCHHHHHHHH
Confidence 334445555444444
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.34 E-value=1.5e+02 Score=22.40 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455555555566667777777776665556666666666666666543
No 350
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=21.25 E-value=2.7e+02 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKR 202 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~ 202 (499)
....+...++.|+.+.+..+++.
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~ 36 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMAN 36 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT
T ss_pred ccchHHHHHHcCCHHHHHHHHHC
Confidence 34455566777888877666553
No 351
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=21.02 E-value=2.9e+02 Score=21.35 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 297 (499)
+.+..+|+.+-..+. ...+|.-++..+.+...+-+.+..|+.
T Consensus 140 ~~~~~~f~~~D~d~d-----G~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 140 QHVDVFFQKMDKNKD-----GIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHCTTCS-----SEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-----CcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 445555655533321 123444455555555545555555443
No 352
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.00 E-value=3.4e+02 Score=22.53 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhHCCCCCCHH--H-----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036198 393 PDGAFETWHEMDKRGCAQDVD--T-----YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~--~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
++.|..+|+.+.+..-.++.. . --..+..|.+.|.+++|.+++++.... .++..-...-+....+..|
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccC
Confidence 567888998887653222221 1 113445677888899999888887665 2344434443433433333
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.85 E-value=7.4e+02 Score=26.01 Aligned_cols=109 Identities=11% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH----------------------Hh
Q 036198 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM----------------------GN 335 (499)
Q Consensus 278 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m----------------------~~ 335 (499)
++..|...|..+-|.++...+ +.+...--.+..+|...|++++|.+.|++. ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh----hHHHHHHHHHhcC
Q 036198 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ----TYNMLISMYFELG 391 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~ 391 (499)
........-|..++..+-+.+.++.+.++-+..++.--.-|.. .|+.++++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 354
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=20.73 E-value=37 Score=21.34 Aligned_cols=22 Identities=14% Similarity=-0.127 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHhhcCCCCChh
Q 036198 191 GLVDYAETICKRVKNKVKPNAN 212 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~~~p~~~ 212 (499)
=+++.|...|.+.+..+||+.+
T Consensus 33 Wd~~~A~~~F~~~~~~IP~eAF 54 (57)
T 2jp7_A 33 WNYEVAIKGFQSSMNGIPREAF 54 (57)
T ss_dssp TCSHHHHHHHHHSTTTSCHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHh
Confidence 3789999999998656666654
No 355
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.59 E-value=2.2e+02 Score=21.31 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=29.7
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNK-NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 34455554432 223444444444 455566666666665544555555555555555553
No 356
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.25 E-value=2.6e+02 Score=21.80 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=40.0
Q ss_pred HHHHHHHHH-HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcChhhHHHHHHHHHhcCCchH
Q 036198 324 EEAYKFLEE-MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--GCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 324 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
+.+.+-+.+ +.+.|.+++. --..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-..+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 344443333 4445666543 3345556666666666777777777665 544555555555666666665543
Done!