Your job contains 1 sequence.
>036199
MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN
NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ
IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI
LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTVCSQ
SFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE
EGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSY
GSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS
STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSA
AATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI
QSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG
SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV
AYSVEQQCFGSEIDTSKDASSDPRKEKPSSKTSRIFGWKFPKLSKKSVLS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036199
(710 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115365 - symbol:AT4G36550 species:3702 "Arabi... 953 7.6e-96 1
TAIR|locus:2008813 - symbol:AT1G67530 species:3702 "Arabi... 555 8.5e-77 2
TAIR|locus:2032472 - symbol:AT1G24330 species:3702 "Arabi... 558 5.9e-74 2
TAIR|locus:2010424 - symbol:PUB45 "plant U-box 45" specie... 560 5.3e-73 2
TAIR|locus:2075140 - symbol:PUB13 "plant U-box 13" specie... 259 7.0e-27 2
UNIPROTKB|Q5VRH9 - symbol:PUB12 "U-box domain-containing ... 236 7.9e-27 3
TAIR|locus:2045334 - symbol:PUB4 "plant U-box 4" species:... 217 8.5e-27 3
TAIR|locus:2102455 - symbol:AT3G54790 species:3702 "Arabi... 197 4.3e-26 3
TAIR|locus:2158252 - symbol:AT5G67340 species:3702 "Arabi... 198 7.3e-26 2
TAIR|locus:2017719 - symbol:AT1G23030 species:3702 "Arabi... 217 4.8e-25 2
TAIR|locus:2082682 - symbol:PUB14 "plant U-box 14" specie... 222 1.6e-24 3
TAIR|locus:2013990 - symbol:AT1G71020 species:3702 "Arabi... 216 1.8e-24 2
UNIPROTKB|Q0IMG9 - symbol:SPL11 "E3 ubiquitin-protein lig... 232 6.8e-24 3
TAIR|locus:2162276 - symbol:PUB15 "Plant U-Box 15" specie... 216 3.9e-23 3
TAIR|locus:2181077 - symbol:SAUR21 "SMALL AUXIN UP RNA 21... 206 3.1e-20 3
TAIR|locus:2079706 - symbol:PUB9 "plant U-box 9" species:... 224 2.7e-18 3
TAIR|locus:2013688 - symbol:PUB17 "plant U-box 17" specie... 246 2.6e-17 1
UNIPROTKB|Q6EUK7 - symbol:PUB4 "U-box domain-containing p... 193 1.3e-16 2
TAIR|locus:2097390 - symbol:AT3G49810 species:3702 "Arabi... 173 8.9e-16 2
TAIR|locus:2152049 - symbol:AT5G65920 species:3702 "Arabi... 166 2.5e-15 2
TAIR|locus:2090604 - symbol:PUB25 "plant U-box 25" specie... 172 9.6e-15 2
TAIR|locus:2195563 - symbol:PUB19 "plant U-box 19" specie... 170 7.2e-14 3
TAIR|locus:2146198 - symbol:AT5G18330 species:3702 "Arabi... 162 9.9e-14 2
TAIR|locus:2014584 - symbol:PUB43 "plant U-box 43" specie... 177 1.1e-13 2
TAIR|locus:2099634 - symbol:AT3G03440 "AT3G03440" species... 212 1.4e-13 2
TAIR|locus:2194564 - symbol:PUB18 "plant U-box 18" specie... 165 4.3e-13 3
TAIR|locus:2012136 - symbol:PUB26 "plant U-box 26" specie... 181 9.5e-13 2
TAIR|locus:2093974 - symbol:PUB29 "plant U-box 29" specie... 160 1.1e-12 2
TAIR|locus:2141226 - symbol:PUB8 "plant U-box 8" species:... 194 2.9e-12 1
TAIR|locus:2013850 - symbol:CMPG1 ""CYS, MET, PRO, and GL... 175 1.6e-11 2
TAIR|locus:2135788 - symbol:AT4G12710 species:3702 "Arabi... 185 3.6e-11 1
TAIR|locus:2096687 - symbol:AT3G01400 species:3702 "Arabi... 182 5.4e-11 1
TAIR|locus:2169861 - symbol:AT5G37490 species:3702 "Arabi... 170 1.0e-10 2
TAIR|locus:2030462 - symbol:SAUL1 "senescence-associated ... 165 1.5e-10 2
TAIR|locus:2146183 - symbol:AT5G18320 species:3702 "Arabi... 173 1.9e-10 2
TAIR|locus:2174814 - symbol:CMPG2 ""CYS, MET, PRO, and GL... 151 4.1e-10 2
TAIR|locus:2039265 - symbol:PUB23 "plant U-box 23" specie... 169 5.3e-10 2
TAIR|locus:2079964 - symbol:PUB22 "plant U-box 22" specie... 168 5.5e-10 2
TAIR|locus:2144846 - symbol:AT5G09800 species:3702 "Arabi... 164 7.4e-10 2
TAIR|locus:2146213 - symbol:AT5G18340 species:3702 "Arabi... 173 9.8e-10 2
TAIR|locus:2154124 - symbol:AT5G62560 species:3702 "Arabi... 116 1.3e-09 2
TAIR|locus:2178818 - symbol:AT5G58680 "AT5G58680" species... 165 4.4e-09 1
TAIR|locus:2145653 - symbol:AT5G14510 species:3702 "Arabi... 161 9.6e-09 1
TAIR|locus:2173742 - symbol:AT5G40140 species:3702 "Arabi... 114 1.1e-07 2
TAIR|locus:2198165 - symbol:AT1G01660 species:3702 "Arabi... 145 1.7e-06 1
TAIR|locus:2198190 - symbol:PUB54 "plant U-box 54" specie... 138 3.1e-06 1
UNIPROTKB|E2QX39 - symbol:WDSUB1 "Uncharacterized protein... 140 4.6e-06 1
TAIR|locus:2098816 - symbol:AT3G61390 species:3702 "Arabi... 139 5.0e-06 1
TAIR|locus:2050659 - symbol:AT2G45920 species:3702 "Arabi... 137 7.1e-06 1
MGI|MGI:1919387 - symbol:Wdsub1 "WD repeat, SAM and U-box... 143 7.2e-06 2
RGD|1359296 - symbol:Wdsub1 "WD repeat, sterile alpha mot... 139 1.2e-05 2
UNIPROTKB|Q8N9V3 - symbol:WDSUB1 "WD repeat, SAM and U-bo... 136 1.2e-05 1
UNIPROTKB|Q5ZMC3 - symbol:WDSUB1 "WD repeat, SAM and U-bo... 135 1.6e-05 1
ZFIN|ZDB-GENE-061110-97 - symbol:zgc:154085 "zgc:154085" ... 137 2.2e-05 2
TAIR|locus:2171810 - symbol:PUB38 "plant U-box 38" specie... 109 2.3e-05 2
UNIPROTKB|F1MRF3 - symbol:WDSUB1 "Uncharacterized protein... 132 3.4e-05 1
TAIR|locus:2100372 - symbol:PUB39 "PLANT U-BOX 39" specie... 113 3.4e-05 2
UNIPROTKB|G3MZA8 - symbol:WDSUB1 "Uncharacterized protein... 132 3.4e-05 1
TAIR|locus:2201205 - symbol:AT1G23180 "AT1G23180" species... 132 7.5e-05 1
TAIR|locus:2130699 - symbol:AT4G16490 "AT4G16490" species... 126 0.00015 1
TAIR|locus:2205866 - symbol:AT1G44120 species:3702 "Arabi... 131 0.00028 1
TAIR|locus:2198180 - symbol:AT1G01670 species:3702 "Arabi... 119 0.00057 1
UNIPROTKB|Q0DR28 - symbol:PUB57 "U-box domain-containing ... 120 0.00078 1
ASPGD|ASPL0000001660 - symbol:AN5906 species:162425 "Emer... 116 0.00080 1
ASPGD|ASPL0000008980 - symbol:AN12408 species:162425 "Eme... 127 0.00087 2
>TAIR|locus:2115365 [details] [associations]
symbol:AT4G36550 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010310 "regulation of
hydrogen peroxide metabolic process" evidence=RCA] [GO:0031347
"regulation of defense response" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002687 GenomeReviews:CT486007_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:AL161589
GO:GO:0000151 EMBL:Z99708 HSSP:Q8VZ40 IPI:IPI00536151 PIR:E85431
RefSeq:NP_195373.6 UniGene:At.31319 ProteinModelPortal:O23225
SMR:O23225 GeneID:829807 KEGG:ath:AT4G36550 TAIR:At4g36550
eggNOG:NOG316001 HOGENOM:HOG000241850 InParanoid:O23225 OMA:CERIRDS
ArrayExpress:O23225 Genevestigator:O23225 Uniprot:O23225
Length = 718
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 254/722 (35%), Positives = 379/722 (52%)
Query: 15 PTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAIGKAKSLLQYCS 74
P S+K+H MC +L + V+RI ++FP+IE ARP CSSG+Q LCLL+NA+ K K LLQYCS
Sbjct: 10 PQSYKMHSSMCLELKRLVDRIMRIFPDIEDARPGCSSGIQTLCLLHNALDKTKQLLQYCS 69
Query: 75 ESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREATFILDS 134
ESSKLY+A+TG I++R R+ +EQ L+ I S+VP +L ++ISQI+ DLR L+
Sbjct: 70 ESSKLYMAVTGDAILARGSRAKKSLEQCLNDIRSIVPTILEIKISQIVQDLRSTQLTLEF 129
Query: 135 SDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIKKLLDKV 194
S+EEAGK +REL+Q+ S+ S + EIK AA +L +++P+AI+ E+RS+K + +
Sbjct: 130 SEEEAGKAIRELMQKSTSSSASPD--EIKDFHYAALKLQLSTPEAIVTERRSLKIICE-- 185
Query: 195 GDSDQSKIXXXXXXXXXXXXXGNSVLGEQKDNACAQEEGSYTVCSQSFEVDSRVGDRKFG 254
D Q+ ++ N E+ C+ S V + D
Sbjct: 186 -DHKQNSFTHHQSIDDSLHANAAEAEASEEHNGTLPEKFK---CTLSRTV---MYDPVII 238
Query: 255 AQTNNLSRAIIPEVF-----KCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTC--P 307
+ N R I + F CP+S R + D ++ + I +W + P
Sbjct: 239 SSGNTFERMQIQKWFDEGNDSCPISKRKL-DDFTLKPNVELKSQ-ISEWCAKNGLDVQDP 296
Query: 308 KTKMKLVCQSLTPNTAMKDLISKWCMNLCS----SMNDLHVPLDISNMSLGSLDTSYGSD 363
K S+ + ++ S N+ S+ D + I + S + G
Sbjct: 297 ARKHVKASNSIDFSVSIASFGSS-LYNIPDHSGISITDFNSSYSIDSSSYSKMSKG-GYF 354
Query: 364 TSSNKI--ADGSNRTPLWTNVHDID-LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS 420
T +I A G+ T + +ID L LT L WD Q KV+ED +R EH + S+S
Sbjct: 355 TPMQRIDSASGAGDTDSSHSEIEIDPLCGLTNLPWDAQIKVVEDVRSRFEHSTRAFRSMS 414
Query: 421 STNFVEPLIRFLRDARDLHDSRAQRI--GCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXX 478
+ F+EPLI +L++A + + + + I G LLLAF+S NR I L E+
Sbjct: 415 PSKFLEPLITYLKNALERNGTAGEIIKGGLDLLLAFLSGNRRAIESLEEEVFKMFSVFLE 474
Query: 479 XXXXTEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV 538
EE L IL LS++ + SKI +SG+L+S+L +++S QE A+ L NLSS +
Sbjct: 475 SEVVAEEALNILEVLSNHPHGPSKITSSGSLSSLLKIVESQAEHLQEQAMITLKNLSSSM 534
Query: 539 DIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598
+I + +F+ KL FL+ ++ILKN+C+TE R C+ ET CL S+AELLE
Sbjct: 535 EICLEMVSLDFIQKLTSFLQQKVFCKHSIIILKNLCSTEKGRGCITETPDCLASIAELLE 594
Query: 599 IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG--VIPSLVKISVYGNDKAKVSALELRRL 656
E+QE+A++ILL LC Q+ +YC LV+ E + SL+ IS G ++ KVSA EL R
Sbjct: 595 SNVPEEQENAISILLQLCVQKIEYCCLVVREATDIYSSLILISNNGTEEVKVSASELLRA 654
Query: 657 LRDVAYSVEQQCFGSEIDTSKDASS------------DPRKEKPSSKTSRIFGWKFPKLS 704
L +V E++ S + +S +P K PS K S +FG+ F L
Sbjct: 655 LVEVDSDKEEEEEVSSRPEGRTTASPTSQVVTPVTHPEPVKITPSPKKSGLFGFNFSSLK 714
Query: 705 KK 706
KK
Sbjct: 715 KK 716
>TAIR|locus:2008813 [details] [associations]
symbol:AT1G67530 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC011020 HSSP:Q8VZ40
HOGENOM:HOG000082565 ProtClustDB:CLSN2679347 EMBL:AK117197
EMBL:BT006484 IPI:IPI00538541 PIR:G96698 RefSeq:NP_001154455.1
RefSeq:NP_176920.1 UniGene:At.35639 UniGene:At.66850
ProteinModelPortal:Q9CAG5 SMR:Q9CAG5 IntAct:Q9CAG5 PaxDb:Q9CAG5
PRIDE:Q9CAG5 EnsemblPlants:AT1G67530.1 EnsemblPlants:AT1G67530.2
GeneID:843074 KEGG:ath:AT1G67530 TAIR:At1g67530 eggNOG:NOG240771
InParanoid:Q9CAG5 OMA:GELENTR PhylomeDB:Q9CAG5
Genevestigator:Q9CAG5 Uniprot:Q9CAG5
Length = 782
Score = 555 (200.4 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 123/340 (36%), Positives = 200/340 (58%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D +E+ E + + K+H MC +LS + ++ +FP +E ARPR SG+QALC L+ A+
Sbjct: 2 DVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIAL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
KAK++LQ+CSE SKLYLAITG ++ + ++ + L ++E +VP + +I +I+
Sbjct: 62 EKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDIVPSSIGSQILEIVG 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F+LD S++E G + LLQ+ + + +E++ AA+RL ITS + L E
Sbjct: 122 ELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALAE 181
Query: 184 KRSIKKLLDKV-GDSDQSK---IXXXXXXXXXXXXXGNSVLGEQKDNA----CAQEEGSY 235
+R++KKL+D+ + D+ K + S + ++ D+ C+ E
Sbjct: 182 RRALKKLIDRARAEEDKRKESIVAYLLHLMRKCSKLFRSEILDENDSPGSYPCSPNEDHG 241
Query: 236 TVCSQSFEVDSRVG---DRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFER 292
+V ++ SR G D+ + N+ + PE +CP+SL+LM DPV+I SGQT+ER
Sbjct: 242 SVHGFGRQL-SRFGSLNDKPMNS-INSGQMPVPPEELRCPISLQLMCDPVIIASGQTYER 299
Query: 293 MWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC 332
+ I+KWF +G++TCPKT+ +L SLTPN +K LI+ WC
Sbjct: 300 VCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWC 339
Score = 237 (88.5 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 81/300 (27%), Positives = 139/300 (46%)
Query: 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VS 456
+CKV+E L+ D + + + FVE L+RFL A D +++ AQ G L V+
Sbjct: 441 KCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVN 500
Query: 457 KNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASILNML 516
NR+ L A+ + LS S I +S A+ ++ +L
Sbjct: 501 NNRNKELMLTSGVIRLLEKMISSAESHGSATALYLNLSCLDEAKSVIGSSQAVPFLVQLL 560
Query: 517 DSPNGKFQEL-AIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVS-CLVILKN 572
+L A+ L+NLS+ + S + L L L + L +L N
Sbjct: 561 QKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLN 620
Query: 573 MCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVI 632
+ +++ + V + G + S+A +L++G +QE AV+ LL LC+ R+ ++V+ EGVI
Sbjct: 621 LASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNGRESCIQMVLQEGVI 680
Query: 633 PSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFGSEIDTSKDASSDPRKEKPSSKT 692
PSLV ISV G + + + +L L R+ E+Q + D +P +++P+ K+
Sbjct: 681 PSLVSISVNGTPRGREKSQKLLMLFRE-----ERQ----QRDQPSSNRDEPPQKEPARKS 731
Score = 41 (19.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 127 EATFILDSSDEEAGKV-LRELLQEDVSAIDSLEFSEIKALQLAASRLCI 174
E +F+ D DEE + + E Q+ ++ ++ E E K + RL +
Sbjct: 404 EESFVSDDDDEEDSDINVLERYQDLLAVLNEEEGLEKKCKVVEKIRLLL 452
>TAIR|locus:2032472 [details] [associations]
symbol:AT1G24330 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AC002396
HSSP:Q8VZ40 eggNOG:NOG251146 HOGENOM:HOG000082565
ProtClustDB:CLSN2679347 IPI:IPI00520534 PIR:T00664
RefSeq:NP_173843.2 UniGene:At.41444 ProteinModelPortal:O48700
SMR:O48700 PaxDb:O48700 PRIDE:O48700 EnsemblPlants:AT1G24330.1
GeneID:839049 KEGG:ath:AT1G24330 TAIR:At1g24330 InParanoid:O48700
OMA:RILMGAN PhylomeDB:O48700 Genevestigator:O48700 Uniprot:O48700
Length = 771
Score = 558 (201.5 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 143/447 (31%), Positives = 237/447 (53%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D SE+ E + + K+H MC +LS ++ +FP +E ARPR SG+Q LC L+ A+
Sbjct: 2 DVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIAL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
KAK++LQ+CSE SKLYLAITG ++ + ++ + + SL ++E +VP + +I I+
Sbjct: 62 EKAKNILQHCSECSKLYLAITGDAVLLKFEKAKSALIDSLRRVEDIVPSSIGSQILDIVG 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F+LD S++E G + LLQ+ + + +E++ AA+RL ITS ++ L E
Sbjct: 122 ELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALAE 181
Query: 184 KRSIKKLLDKVG-DSDQSK---IXXXXXXXXXXXXXGNSVLGEQKDNACAQE-----EGS 234
+R++KK++D+ + D+ K + S + ++ D+ C+ +G
Sbjct: 182 RRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPTGQGP 241
Query: 235 YTVCSQSFEVD-SRVGDRKFGAQTNNLS--RAIIPEVFKCPLSLRLMYDPVVIESGQTFE 291
+F S+ G + + S I PE +CP+SL+LMYDPV+I SGQT+E
Sbjct: 242 NEDRVNAFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIASGQTYE 301
Query: 292 RMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNM 351
R+ I+KWF +G+++CPKT+ +L SLTPN +K LI+ WC N + VP
Sbjct: 302 RVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWC-----EQNGITVPTGPPE- 355
Query: 352 SLGSLDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEH 411
SLD +Y ++A + +P N +D L D + +E+ T +E
Sbjct: 356 ---SLDLNYW------RLAMSDSESP---NSKSVDSVGLCTPK-DIRVVPLEESST-IES 401
Query: 412 DNQVSHSLSSTNFVEPLIRFLRDARDL 438
+ Q ++ + V+ I L +D+
Sbjct: 402 ERQQKEKNNAPDEVDSEINVLEGYQDI 428
Score = 207 (77.9 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 71/267 (26%), Positives = 124/267 (46%)
Query: 398 QCKVIEDYETRLEHDNQVSHSLSSTN-FVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-V 455
+CKV+E+ L+ DN+ + L N FVE ++FL A +++ AQ G L V
Sbjct: 441 KCKVVENVRILLK-DNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAV 499
Query: 456 SKNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASILNM 515
+ NR+ L A+ + LS I +S A++ +N+
Sbjct: 500 NNNRNKELMLTSGVIPLLEKMISCSQSQGPATALYLNLSCLEKAKPVIGSSQAVSFFVNL 559
Query: 516 LDSPNGKFQEL-AIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT-LAVS-CLVILKN 572
L +L A+ L+NLS+ + S + L L + L +L N
Sbjct: 560 LLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWIEKSLAVLLN 619
Query: 573 MCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVI 632
+ ++ + ++ T G + ++A +L+ G +QE AV+ L+ LC+ + ++V+ EGVI
Sbjct: 620 LASSREGKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVI 679
Query: 633 PSLVKISVYGNDKAKVSALELRRLLRD 659
PSLV ISV G+ + + + +L L R+
Sbjct: 680 PSLVSISVNGSPRGRDKSQKLLMLFRE 706
Score = 92 (37.4 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 34/141 (24%), Positives = 69/141 (48%)
Query: 485 ETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544
+ L L LS+Y+ I +++S + S+ + + N + E ++ +L NL+S + + +
Sbjct: 571 DALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSREGKEEM 630
Query: 545 APSEFLPKLVPFLKDA--TL----AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598
++ + + + D T+ AVSCLVIL C + + +V G +PS+ +
Sbjct: 631 ITTQGMISTLATVLDTGDTVEQEQAVSCLVIL---CTGSESCIQMVLQEGVIPSLVSISV 687
Query: 599 IGSEEDQEHAVAILLCLCSQR 619
GS ++ + +L+ QR
Sbjct: 688 NGSPRGRDKSQKLLMLFREQR 708
>TAIR|locus:2010424 [details] [associations]
symbol:PUB45 "plant U-box 45" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0019894 "kinesin binding" evidence=IEA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC069471
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HSSP:Q8VZ40 EMBL:AY094469 EMBL:BT002721 EMBL:AK230080
IPI:IPI00517206 PIR:D86404 RefSeq:NP_174112.1 UniGene:At.22435
ProteinModelPortal:Q9C7G1 SMR:Q9C7G1 PRIDE:Q9C7G1
EnsemblPlants:AT1G27910.1 GeneID:839684 KEGG:ath:AT1G27910
TAIR:At1g27910 eggNOG:NOG251146 HOGENOM:HOG000082565
InParanoid:Q9C7G1 OMA:SENMSIP PhylomeDB:Q9C7G1
ProtClustDB:CLSN2679347 Genevestigator:Q9C7G1 Uniprot:Q9C7G1
Length = 768
Score = 560 (202.2 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 155/468 (33%), Positives = 246/468 (52%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D +E+ E + +P K+H MC LS +I +FP +EAARPR SG+QALC L+ +
Sbjct: 2 DVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSLHVVL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
K K++L++C+ESSKLYLAITG +V + ++ + + SL ++E +V + ++ +I+
Sbjct: 62 EKVKNILRHCTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEILM 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F LD +++E G + LLQ+ + S + +E++ AA+RL ITS +A L E
Sbjct: 122 ELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALTE 181
Query: 184 KRSIKKLLDKVG-DSDQSKIXXXXXXXXXXXXXGNSVLGEQKDNACAQEEGSYTVCSQSF 242
+R +KKL+++ + D+ K E D+ +Q S CS +
Sbjct: 182 RRCLKKLIERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLP-CSPTI 240
Query: 243 E--VDSRVG---DRK------FGAQTNNLSR-----AIIPEVFKCPLSLRLMYDPVVIES 286
+ +D G DR+ F ++ N +R ++ PE +CP+SL+LMYDPV+I S
Sbjct: 241 QGSIDDAHGRAFDRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPVIIAS 300
Query: 287 GQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPL 346
GQT+ER+ I+KWF +G++TCPKT +L LTPN +K LIS WC N + VP
Sbjct: 301 GQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWC-----EQNGVQVP- 354
Query: 347 DISNMSLG------SLDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWD-CQC 399
D SL +L S +DT S K GS + +V + L + + C+
Sbjct: 355 DGPPESLDLNYWRLALSVSESTDTRSAKRV-GSCKLK---DVKVVPLEESGTIKEEACES 410
Query: 400 KVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDL-HDSRAQRI 446
+ ED T +E ++ +L+ + + R + R L D RI
Sbjct: 411 EYQEDQVTLVERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEEARI 458
Score = 196 (74.1 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 85/334 (25%), Positives = 145/334 (43%)
Query: 376 TPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDA 435
T L T + D+D R +C+V+E L+ D + + VE L++FL A
Sbjct: 424 TELLTTLTDVDTLRK-------KCRVVEQIRVLLKDDEEARILMGENGCVEALLQFLGSA 476
Query: 436 RDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVALS 494
+ +++ AQ++G L V NR+ L AI + LS
Sbjct: 477 LNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEMLCNPHSHGSVTAIYLNLS 536
Query: 495 SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLV 554
I +S A+ ++N+L + + + LH+L +I P LV
Sbjct: 537 CLEEAKPVIGSSLAVPFMVNLLWTETEV--QCKVDALHSLFHLSTYPPNI-PCLLSADLV 593
Query: 555 PFLKDATLA------VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHA 608
L+ T++ L +L N+ E + +V + ++ +L+ G +QE A
Sbjct: 594 NALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILDTGEPNEQEQA 653
Query: 609 VAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR-----DVAYS 663
V++LL LC+ + ++V+ EGVIPSLV ISV G + + A +L L R D +
Sbjct: 654 VSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRELRQRDQTHL 713
Query: 664 VEQQCFGSEIDTSKD----ASSDPRKEKPSSKTS 693
E Q +E+ + +D AS+ + KP K++
Sbjct: 714 TEPQ--HTEVTSPEDGFSVASAAVTETKPQCKSA 745
>TAIR|locus:2075140 [details] [associations]
symbol:PUB13 "plant U-box 13" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0016567
"protein ubiquitination" evidence=IEA;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0042742 "defense response to bacterium"
evidence=IGI] [GO:0000902 "cell morphogenesis" evidence=RCA]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
[GO:0016049 "cell growth" evidence=RCA] [GO:0032880 "regulation of
protein localization" evidence=RCA] [GO:0046777 "protein
autophosphorylation" evidence=RCA] [GO:0048193 "Golgi vesicle
transport" evidence=RCA] [GO:0048767 "root hair elongation"
evidence=RCA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0042742 EMBL:AL133314
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY042791 EMBL:AY128813
IPI:IPI00531350 PIR:T45588 RefSeq:NP_190235.1 UniGene:At.23070
ProteinModelPortal:Q9SNC6 SMR:Q9SNC6 STRING:Q9SNC6 PaxDb:Q9SNC6
PRIDE:Q9SNC6 EnsemblPlants:AT3G46510.1 GeneID:823804
KEGG:ath:AT3G46510 TAIR:At3g46510 eggNOG:NOG269633
InParanoid:Q9SNC6 OMA:DSRIQEH PhylomeDB:Q9SNC6
ProtClustDB:CLSN2684834 Genevestigator:Q9SNC6 Uniprot:Q9SNC6
Length = 660
Score = 259 (96.2 bits), Expect = 7.0e-27, Sum P(2) = 7.0e-27
Identities = 90/310 (29%), Positives = 148/310 (47%)
Query: 73 CSESSKLYLAITGG---VIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREAT 129
CS L G +++ R ++ +ME S+ +S+ + E I D++RE
Sbjct: 73 CSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQI--PYEELDISDEVREQV 130
Query: 130 FILDSSDEEA-GKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIK 188
++ S A G+V DVS D L + ++++L +S + P ++E R K
Sbjct: 131 ELVLSQFRRAKGRV-------DVSD-DEL-YEDLQSLCNKSSDVDAYQP---VLE-RVAK 177
Query: 189 KL-LDKVGDSDQSKIXXXXXXXXXXXXXGNS------VLGEQKDNACAQEEGSYTVCSQS 241
KL L ++ D Q + G + VL KD +++ Q
Sbjct: 178 KLHLMEIPDLAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGE---EQK 234
Query: 242 FEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE 301
V+SR + A + + +IP+ F+CP+SL +M DPV++ SGQT+ER I+KW E
Sbjct: 235 VGVNSRSNGQTSTAASQKIP--VIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEG 292
Query: 302 GNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYG 361
G+ TCPKT+ L +LTPN ++ LI++WC ND+ P S++ + +S+
Sbjct: 293 GHSTCPKTQQALTSTTLTPNYVLRSLIAQWC-----EANDIEPPKPPSSLRPRKV-SSFS 346
Query: 362 SDTSSNKIAD 371
S +NKI D
Sbjct: 347 SPAEANKIED 356
Score = 142 (55.0 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 39/139 (28%), Positives = 73/139 (52%)
Query: 24 MCTQLSKFVERIAKVFPEI-EAARPRCSSGVQALCLLNNAIGKAKSLLQYCSESSKLYLA 82
+C L++ ++ + +F EI E+ P ++ L L A+ AK L++CS+ SK+YL
Sbjct: 32 LCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEAMCSAKDYLKFCSQGSKIYLV 91
Query: 83 ITGGVIVSRCMRSTNMMEQSLSQI---ESMVPVMLAVEISQIIDDLREATFILDSSDEEA 139
+ + S+ M + +EQSLSQI E + + ++ ++ R A +D SD+E
Sbjct: 92 MEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDEL 151
Query: 140 GKVLRELLQEDVSAIDSLE 158
+ L+ L + S +D+ +
Sbjct: 152 YEDLQSLCNKS-SDVDAYQ 169
Score = 124 (48.7 bits), Expect = 7.0e-27, Sum P(2) = 7.0e-27
Identities = 77/356 (21%), Positives = 143/356 (40%)
Query: 316 QSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSNR 375
Q+LT T + + + + ND+ P S++ + +S+ S +NKI D R
Sbjct: 302 QALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKV-SSFSSPAEANKIEDLMWR 360
Query: 376 TPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDA 435
+ N D S E+ +++ + DN+V+ ++ + L+ L
Sbjct: 361 LA-YGNPED-QRSAAGEI------RLL----AKRNADNRVA--IAEAGAIPLLVGLLSTP 406
Query: 436 RDLHDSRAQR--IGCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVAL 493
DSR Q + L L+ N+ I E A L +L
Sbjct: 407 ----DSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSL 462
Query: 494 SSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKL 553
S I A GA+ ++ +L+ + ++ A L NL + + +P L
Sbjct: 463 SVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTL 522
Query: 554 VPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611
L + + + L IL + + + ++ +S +PS+ E + GS ++E+A A+
Sbjct: 523 TRLLTEPGSGMVDEALAILAILSSHPEGKA-IIGSSDAVPSLVEFIRTGSPRNRENAAAV 581
Query: 612 LLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQ 667
L+ LCS Q+ G++ L+ ++ G D+ K A +L L ++ EQQ
Sbjct: 582 LVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQL---LERISRLAEQQ 634
>UNIPROTKB|Q5VRH9 [details] [associations]
symbol:PUB12 "U-box domain-containing protein 12"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AP008212
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 EMBL:AP002842 EMBL:AK067611 EMBL:AK071080
RefSeq:NP_001056535.2 UniGene:Os.11259 ProteinModelPortal:Q5VRH9
EnsemblPlants:LOC_Os06g01304.1 GeneID:4339839 KEGG:osa:4339839
Gramene:Q5VRH9 eggNOG:NOG242845 OMA:KTGSPRN ProtClustDB:CLSN2695872
Uniprot:Q5VRH9
Length = 611
Score = 236 (88.1 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
IIP+ F+CP+SL LM DPV++ SGQT+ER IQKW + G+ TCPKT+ L SLTPN
Sbjct: 227 IIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFV 286
Query: 324 MKDLISKWC 332
+K LIS+WC
Sbjct: 287 LKSLISQWC 295
Score = 133 (51.9 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 50/178 (28%), Positives = 83/178 (46%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNML--DSPNGKFQELAIKILHNLSSDVDIQ 541
E A L +LS I A+GA+ ++N+L SP GK ++ A I NL +
Sbjct: 424 ENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGK-KDAATAIF-NLCIYQGNK 481
Query: 542 SHIAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI 599
+ + L+ FL D T + L +L + ++ V+ S +P + E+++
Sbjct: 482 VRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKI-VIARSEPIPPLVEVIKT 540
Query: 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657
GS ++E+A AIL LCS + GV +L ++S G D+AK A + L+
Sbjct: 541 GSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELM 598
Score = 114 (45.2 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 35/140 (25%), Positives = 67/140 (47%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL 562
I +GA+ ++N+L S + + QE A+ L NLS + ++ I S +PK+V LK ++
Sbjct: 361 IAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSM 420
Query: 563 AV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620
+ L ++ + +V + +G +P + LL GS ++ A + LC +
Sbjct: 421 ETRENAAATLFSLSVVDENKV-TIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQG 479
Query: 621 QYCKLVMNEGVIPSLVKISV 640
+ V G++ L+ V
Sbjct: 480 NKVRAV-KAGIVIHLMNFLV 498
Score = 56 (24.8 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 27/131 (20%), Positives = 54/131 (41%)
Query: 25 CTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAIGKAKSLLQYCSESSKLYLAIT 84
C LS+ V +A + + A+ SS A +A+G A+ LL+ + SK+ A+
Sbjct: 23 CADLSRRVRLLAPLLDHLPASSSSSSSTPLA-----DALGAARDLLRKTRDGSKIDQAMR 77
Query: 85 GGVIVSRCM---RSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREATFILDSSDEEAGK 141
G + R ++ +L +P + +++ + + A+ D D +
Sbjct: 78 GDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQFQRASTRTDPPDTQLSM 137
Query: 142 VLRELLQEDVS 152
L L ++ S
Sbjct: 138 DLAWALTDNPS 148
Score = 43 (20.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 608 AVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKV 648
A+ +L+ L S D + E + +L+ +S++ N+KA +
Sbjct: 366 AIPLLVNLLSSSDPRTQ----EHAVTALLNLSIHENNKASI 402
Score = 43 (20.2 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNE-GVIPSLVKI 638
L S+ L G++ D++ A A + L ++R+ ++ + E G IP LV +
Sbjct: 325 LVSLMNRLRSGNQ-DEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNL 373
>TAIR|locus:2045334 [details] [associations]
symbol:PUB4 "plant U-box 4" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 EMBL:CP002685 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 IPI:IPI00532127
RefSeq:NP_179895.6 UniGene:At.39339 ProteinModelPortal:F4ILG6
SMR:F4ILG6 PRIDE:F4ILG6 EnsemblPlants:AT2G23140.1 GeneID:816846
KEGG:ath:AT2G23140 OMA:WRRPSER Uniprot:F4ILG6
Length = 829
Score = 217 (81.4 bits), Expect = 8.5e-27, Sum P(3) = 8.5e-27
Identities = 56/162 (34%), Positives = 89/162 (54%)
Query: 220 LGEQKDNACAQEEGSYTV--CSQSFEVDSRVGDRKFGA-QTNNLSRAIIPEVFKCPLSLR 276
L QK+ A Q E + V Q + +R+ +R QT S AI+ + F CPLSL
Sbjct: 187 LERQKEMA-EQSENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSSVAILADFF-CPLSLE 244
Query: 277 LMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336
+M DPV++ SGQT+E+ +I++W + G CPKT+ L +L PN +K LI+ WC
Sbjct: 245 VMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETND 304
Query: 337 SSMNDLHVPLDISNMS--LGSLDT--SYGSDTSSNKIADGSN 374
+ D + ++ +S L D+ S G+D S+ K+++ S+
Sbjct: 305 VKLPDPNKSTSLNELSPLLSCTDSIPSTGADVSARKVSNKSH 346
Score = 173 (66.0 bits), Expect = 8.5e-27, Sum P(3) = 8.5e-27
Identities = 49/177 (27%), Positives = 88/177 (49%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543
E + A L +LS KI SGA+ ++++L + + ++ A L NLS + ++
Sbjct: 645 ENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAM 704
Query: 544 IAPSEFLPKLVPFLKDATLAVS-CLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSE 602
I S + L+ + A V + +L N+ R + + G +P + E++E+GS
Sbjct: 705 IVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGG-IPLLVEVVELGSA 763
Query: 603 EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659
+E+A A LL L + ++C +V+ EG +P LV +S G +A+ A L R+
Sbjct: 764 RGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRN 820
Score = 93 (37.8 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 44/212 (20%), Positives = 89/212 (41%)
Query: 411 HDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDXX 470
+DN +++ +EPLI L + +++ L+ + +N+ I
Sbjct: 616 NDNN-KKAIADAGAIEPLIHVLENGSS--EAKENSAATLFSLSVIEENKIKIGQSGAIGP 672
Query: 471 XXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKI 530
++ L LS + + IV SGA+ +++++D G + A+ +
Sbjct: 673 LVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDK-AVAV 731
Query: 531 LHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVC-VVETS 587
L NL++ + ++ I +P LV ++ A + L + +T R C +V
Sbjct: 732 LANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQL-STNSGRFCNMVLQE 790
Query: 588 GCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619
G +P + L + G+ +E A A+L +QR
Sbjct: 791 GAVPPLVALSQSGTPRAREKAQALLSYFRNQR 822
Score = 80 (33.2 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 38/200 (19%), Positives = 87/200 (43%)
Query: 443 AQRIGCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYAYFISK 502
++R+G R++ A ++ R + + T+ + L + ++
Sbjct: 520 SERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNR 579
Query: 503 IVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA 560
IV SGA+ ++ +L S + QE A+ L NLS + + + IA + + L+ L++
Sbjct: 580 IVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENG 639
Query: 561 TLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
+ + L ++ E ++ + + SG + + +LL G+ ++ A L L
Sbjct: 640 SSEAKENSAATLFSLSVIEENKIKIGQ-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIH 698
Query: 619 RDQYCKLVMNEGVIPSLVKI 638
++ +V + G + L+ +
Sbjct: 699 QENKAMIVQS-GAVRYLIDL 717
Score = 43 (20.2 bits), Expect = 8.5e-27, Sum P(3) = 8.5e-27
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 117 EISQIIDDLREATFILDSS-DEEAGKVLRELLQEDVSAID 155
E+ +++ + + D DE+ GK EL Q+ +ID
Sbjct: 37 ELLRVLKPIADVVVTSDFVFDEKLGKAFEELTQDVDQSID 76
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 96 TNMMEQSLSQIESMVPVMLAVEISQIIDDLREAT 129
+N + LS++E+ V ++ S +D R+AT
Sbjct: 532 SNETRRDLSEVETQVKKLVEELKSSSLDTQRQAT 565
>TAIR|locus:2102455 [details] [associations]
symbol:AT3G54790 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AL138650 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK118613 IPI:IPI00538000 PIR:T47638
RefSeq:NP_191039.2 UniGene:At.1218 UniGene:At.48768
ProteinModelPortal:Q8GWV5 SMR:Q8GWV5 PaxDb:Q8GWV5 PRIDE:Q8GWV5
EnsemblPlants:AT3G54790.1 GeneID:824644 KEGG:ath:AT3G54790
TAIR:At3g54790 eggNOG:NOG259040 InParanoid:Q8GWV5 OMA:LSHFRNQ
PhylomeDB:Q8GWV5 ProtClustDB:CLSN2680413 Genevestigator:Q8GWV5
Uniprot:Q8GWV5
Length = 760
Score = 197 (74.4 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 55/167 (32%), Positives = 87/167 (52%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP F+CPLS LM DPV++ SGQTF+R I+KW + G CP+T+ L Q L PN +
Sbjct: 238 IPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTV 297
Query: 325 KDLISKWC----MNLCSSMNDLHVPLDISNMS--LGSLDTSYG-SDTSSNKIADGSNRTP 377
K +I+ W +NL ++ + D S+M+ +GS D + S S + + ++R+
Sbjct: 298 KAMIASWLEANRINLATNSCHQYDGGDASSMANNMGSQDFNRTESFRFSLRSSSLTSRSS 357
Query: 378 LWTN--VHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSST 422
L T + ++ L + Q K +E +E L +HS S +
Sbjct: 358 LETGNGFEKLKINVSASLCGESQSKDLEIFEL-LSPGQSYTHSRSES 403
Score = 187 (70.9 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 51/172 (29%), Positives = 88/172 (51%)
Query: 484 EETLAILVALSSYAYFISKIVASGA-LASILNMLDSPNGKFQELAIKILHNLSSDVDIQS 542
E + A L +LS +I S A + +++N+L + ++ A L NLS D ++
Sbjct: 573 ENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKA 632
Query: 543 HIAPSEFLPKLVPFLK-DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
I ++ + LV L D + + +L N+ R +V G +P + E +++GS
Sbjct: 633 RIVQAKAVKYLVELLDPDLEMVDKAVALLANLSAVGEGRQAIVREGG-IPLLVETVDLGS 691
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALEL 653
+ +E+A ++LL LC ++C LV+ EG IP LV +S G +AK A +L
Sbjct: 692 QRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQL 743
Score = 76 (31.8 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 30/126 (23%), Positives = 58/126 (46%)
Query: 501 SKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPF--LK 558
++IV + A+ ++ +LD P+ + + A+ +L NLS+ + + I +P LV L
Sbjct: 632 ARIVQAKAVKYLVELLD-PDLEMVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDLG 690
Query: 559 DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
+ +L +C +V G +P + L + G++ +E A +L +Q
Sbjct: 691 SQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQ 750
Query: 619 RDQYCK 624
RD K
Sbjct: 751 RDARMK 756
Score = 73 (30.8 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 43/170 (25%), Positives = 76/170 (44%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543
E + L+ LS + IV GA+ ++++L++ N + +E + L +LS +
Sbjct: 532 EHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRER 591
Query: 544 IAPSEF-LPKLVPFLKDATLA--VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG 600
I S + LV L T L N+ T + +V+ + + ELL+
Sbjct: 592 IGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKA-VKYLVELLDPD 650
Query: 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
E + AVA+L L S + + ++ EG IP LV+ G+ + K +A
Sbjct: 651 LEM-VDKAVALLANL-SAVGEGRQAIVREGGIPLLVETVDLGSQRGKENA 698
Score = 52 (23.4 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
Identities = 28/128 (21%), Positives = 57/128 (44%)
Query: 507 GALASILNMLDSPNGKFQELAIKILHNLS-SDVDIQSHIAPSEFLPKLVPFLKDAT--LA 563
GA+ +L++L S QE A+ L NLS S+++ ++ I + LV L
Sbjct: 514 GAITPLLSLLYSEEKLTQEHAVTALLNLSISELN-KAMIVEVGAIEPLVHVLNTGNDRAK 572
Query: 564 VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623
+ L ++ + R + +++ + ++ LL G+ ++ A + L L D
Sbjct: 573 ENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKA 632
Query: 624 KLVMNEGV 631
++V + V
Sbjct: 633 RIVQAKAV 640
Score = 42 (19.8 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 7 EIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSS--GV-QALCLLNN-- 61
E+V+ P+ ++ G C L V + A+ F +E P+ S GV Q LL
Sbjct: 50 EVVDC-KIPSDDCLYKG-CEDLDSVVNQ-AREF--LEDWSPKLSKLFGVFQCEVLLGKVQ 104
Query: 62 --AIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESM 109
++ ++ LLQ S+SS + ++ V RC++ T +Q + +E M
Sbjct: 105 TCSLEISRILLQL-SQSSPVTSSVQS---VERCVQETESFKQEGTLMELM 150
>TAIR|locus:2158252 [details] [associations]
symbol:AT5G67340 species:3702 "Arabidopsis thaliana"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0000165
"MAPK cascade" evidence=RCA] [GO:0006499 "N-terminal protein
myristoylation" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0006865 "amino acid transport"
evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0006984 "ER-nucleus signaling pathway" evidence=RCA]
[GO:0007154 "cell communication" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009414 "response to water
deprivation" evidence=RCA] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009627 "systemic acquired resistance"
evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=RCA] [GO:0031348 "negative regulation of
defense response" evidence=RCA] [GO:0034976 "response to
endoplasmic reticulum stress" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AB007645 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:BT015818 EMBL:BT020206 EMBL:AK229487
IPI:IPI00537014 RefSeq:NP_201535.3 UniGene:At.28815
ProteinModelPortal:Q5XEZ8 SMR:Q5XEZ8 STRING:Q5XEZ8 PaxDb:Q5XEZ8
PRIDE:Q5XEZ8 EnsemblPlants:AT5G67340.1 GeneID:836869
KEGG:ath:AT5G67340 TAIR:At5g67340 eggNOG:NOG269447
InParanoid:Q5XEZ8 OMA:LASWCET PhylomeDB:Q5XEZ8
ProtClustDB:CLSN2681130 Genevestigator:Q5XEZ8 Uniprot:Q5XEZ8
Length = 707
Score = 198 (74.8 bits), Expect = 7.3e-26, Sum P(2) = 7.3e-26
Identities = 69/241 (28%), Positives = 116/241 (48%)
Query: 99 MEQSLSQIESMVPVMLAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLE 158
+++ Q +S P+ + I+ L A+ + +SS E ++L+ Q + + S
Sbjct: 77 VDELREQFQSWQPLSTRIFYVLRIESL--ASKLRESS-LEVFQLLKHCEQHLPADLISPS 133
Query: 159 FSE-IKALQLAA-SRLCITSPKAILIEKRSI---KKLLDKVGDSDQSKIXXXXXXXXXXX 213
F E I+ ++L A + T +A+ +K+ + ++L K+ +S +
Sbjct: 134 FEECIELVKLVARDEISYTIDQALKDQKKGVGPTSEVLVKIAESTGLR-SNQEILVEGVV 192
Query: 214 XXGNSVLGEQKDNACAQE--EGSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKC 271
E DN E +G ++ +Q E + D K AQ R +P F+C
Sbjct: 193 LTNMKEDAELTDNDTEAEYLDGLISLTTQMHEY---LSDIK-QAQLRCPVR--VPSDFRC 246
Query: 272 PLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331
LSL LM DPV++ SGQTFER++IQKW + G CPKT+ L +LTPN ++ ++ W
Sbjct: 247 SLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVRAFLASW 306
Query: 332 C 332
C
Sbjct: 307 C 307
Score = 180 (68.4 bits), Expect = 7.3e-26, Sum P(2) = 7.3e-26
Identities = 47/172 (27%), Positives = 90/172 (52%)
Query: 488 AILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPS 547
A L +LS + ++I +GA+ ++++L S + ++ A L NLS + ++ + +
Sbjct: 527 ATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEA 586
Query: 548 EFLPKLVPFLKDAT-LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQE 606
+ LV + A + +V+L N+ ++ + E G +P + E++E+GS +E
Sbjct: 587 GAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIGEEGG-IPVLVEVVELGSARGKE 645
Query: 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
+A A LL LC+ ++C V+ EGVIP LV ++ G + K A L + +
Sbjct: 646 NATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFK 697
Score = 77 (32.2 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 34/134 (25%), Positives = 63/134 (47%)
Query: 508 ALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLA---V 564
A+ S++++L S + + Q A+ L NLS + + +S IA S + L+ LK L
Sbjct: 464 AIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKA 523
Query: 565 SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624
+ L ++ E + + E +G + + +LL GS ++ A L L + K
Sbjct: 524 NSAATLFSLSVIEEYKTEIGE-AGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTK 582
Query: 625 LVMNEGVIPSLVKI 638
V+ G + LV++
Sbjct: 583 -VIEAGAVRYLVEL 595
Score = 74 (31.1 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 34/126 (26%), Positives = 57/126 (45%)
Query: 528 IKILHNLSSDVDIQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEHARVCVVE 585
I+IL S+D I IA E +P LV L D + + L N+ ++ + + E
Sbjct: 445 IRILARNSTDNRIV--IARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAE 502
Query: 586 TSGCLPSVAELLEIGS-EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGND 644
+ +P + +L+ G EE + ++ A L L S ++Y + G I LV + G+
Sbjct: 503 SGAIVPLI-HVLKTGYLEEAKANSAATLFSL-SVIEEYKTEIGEAGAIEPLVDLLGSGSL 560
Query: 645 KAKVSA 650
K A
Sbjct: 561 SGKKDA 566
Score = 62 (26.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 31/105 (29%), Positives = 48/105 (45%)
Query: 552 KLVPFLKDATL-----AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQE 606
KL+ LK ++L A + + IL N+ R+ V+ +PS+ LL E Q
Sbjct: 425 KLIDDLKSSSLDTQREATARIRILAR--NSTDNRI-VIARCEAIPSLVSLLYSTDERIQA 481
Query: 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN-DKAKVSA 650
AV LL L S D L+ G I L+ + G ++AK ++
Sbjct: 482 DAVTCLLNL-SINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANS 525
Score = 55 (24.4 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 25/117 (21%), Positives = 52/117 (44%)
Query: 114 LAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLC 173
+ E+ ++IDDL+ ++ LD+ E ++ +L + S + + + +A+ S L
Sbjct: 419 IETEVKKLIDDLKSSS--LDTQREATARI--RILARN-STDNRIVIARCEAIPSLVSLLY 473
Query: 174 ITSPKAILIEKRSIKKLLD-KVGDSDQSKIXXXXXXXXXXXXXGNSVLGEQKDNACA 229
T + I+ ++ LL+ + D+++S I L E K N+ A
Sbjct: 474 STDER---IQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAA 527
Score = 37 (18.1 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 117 EISQIIDDLRE 127
E++Q +D+LRE
Sbjct: 72 ELAQYVDELRE 82
>TAIR|locus:2017719 [details] [associations]
symbol:AT1G23030 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0010200 "response to
chitin" evidence=IEP] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AF000657
HOGENOM:HOG000238412 HSSP:Q8VZ40 ProtClustDB:CLSN2681864
EMBL:BT002518 EMBL:AK221923 IPI:IPI00532693 PIR:D86364
RefSeq:NP_173716.1 UniGene:At.41572 UniGene:At.74178
ProteinModelPortal:Q8GUG9 SMR:Q8GUG9 PaxDb:Q8GUG9 PRIDE:Q8GUG9
EnsemblPlants:AT1G23030.1 GeneID:838911 KEGG:ath:AT1G23030
TAIR:At1g23030 eggNOG:KOG0167 InParanoid:Q8GUG9 OMA:IDCGNLT
PhylomeDB:Q8GUG9 Genevestigator:Q8GUG9 Uniprot:Q8GUG9
Length = 612
Score = 217 (81.4 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 256 QTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315
++ + IP F CP+SL LM DPV++ +GQT+ER +IQ+W + GN TCPKT+ KL
Sbjct: 232 ESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLEN 291
Query: 316 QSLTPNTAMKDLISKWC 332
+LTPN ++ LIS+WC
Sbjct: 292 FTLTPNYVLRSLISRWC 308
Score = 150 (57.9 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
Identities = 56/237 (23%), Positives = 106/237 (44%)
Query: 427 PLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEET 486
P++ L + D+ ++ I C L L+ N+ I + E
Sbjct: 376 PVLVNLLTSEDVA-TQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENA 434
Query: 487 LAILVALSSYAYFISKIV--ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544
A L +LS +KI+ SGA+ +++++L++ + ++ A L NL +
Sbjct: 435 AATLFSLSLADE--NKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRA 492
Query: 545 APSEFLPKLVPFLKDAT---LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
+ + LV L D+T + L IL + N + A+ +V+ + LP++ +L+
Sbjct: 493 VRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKAN-TLPALIGILQTDQ 551
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
++E+A AILL LC + + + G + L+ +S G ++ K A+ L LLR
Sbjct: 552 TRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
Score = 103 (41.3 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 34/138 (24%), Positives = 68/138 (49%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL 562
I +GA+ ++N+L S + QE AI + NLS + + I + + +V L+ T+
Sbjct: 369 IAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTM 428
Query: 563 AV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620
+ L ++ + ++ ++ SG +P++ +LLE G+ ++ A L LC
Sbjct: 429 EARENAAATLFSLSLADENKI-IIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHG 487
Query: 621 QYCKLVMNEGVIPSLVKI 638
+ V G++ +LVK+
Sbjct: 488 NKGRAV-RAGIVTALVKM 504
Score = 68 (29.0 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 558 KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617
+D AVS + L +T++ R+ + E +G +P + LL QE+A+ +L L S
Sbjct: 346 EDRRNAVSEIRSLSKR-STDN-RILIAE-AGAIPVLVNLLTSEDVATQENAITCVLNL-S 401
Query: 618 QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
+ +L+M G + S+V++ G +A+ +A
Sbjct: 402 IYENNKELIMFAGAVTSIVQVLRAGTMEARENA 434
Score = 47 (21.6 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 592 SVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
++ + L S ED+ +AV+ + L + L+ G IP LV +
Sbjct: 335 ALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNL 381
>TAIR|locus:2082682 [details] [associations]
symbol:PUB14 "plant U-box 14" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005871 "kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;ISS] [GO:0019894 "kinesin binding"
evidence=IEA] [GO:0070696 "transmembrane receptor protein
serine/threonine kinase binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 EMBL:AL049655
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HOGENOM:HOG000238412
eggNOG:NOG242845 OMA:KTGSPRN EMBL:AY065279 EMBL:AY096530
IPI:IPI00539579 PIR:T06735 RefSeq:NP_191045.2 UniGene:At.28098
PDB:1T1H PDBsum:1T1H ProteinModelPortal:Q8VZ40 SMR:Q8VZ40
IntAct:Q8VZ40 STRING:Q8VZ40 PaxDb:Q8VZ40 PRIDE:Q8VZ40
EnsemblPlants:AT3G54850.1 GeneID:824650 KEGG:ath:AT3G54850
TAIR:At3g54850 InParanoid:Q8VZ40 PhylomeDB:Q8VZ40
ProtClustDB:CLSN2690608 EvolutionaryTrace:Q8VZ40
Genevestigator:Q8VZ40 GermOnline:AT3G54850 Uniprot:Q8VZ40
Length = 632
Score = 222 (83.2 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 244 VDSRVGDRKFGAQTNNLSRA-IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEG 302
++S D G++ + R+ +IPE F+CP+SL LM DPV++ +GQT+ER IQKW + G
Sbjct: 226 MESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG 285
Query: 303 NHTCPKTKMKLVCQSLTPNTAMKDLISKWC 332
+ TCPK++ L+ LTPN +K LI+ WC
Sbjct: 286 HKTCPKSQETLLHAGLTPNYVLKSLIALWC 315
Score = 130 (50.8 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 43/177 (24%), Positives = 79/177 (44%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543
E A L +LS I A+GA+ +++++L+ + ++ A + NL +S
Sbjct: 446 ENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSR 505
Query: 544 IAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
+ L LKDA + L IL + + + + E +P + E++ GS
Sbjct: 506 AVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAES-IPVLVEIIRTGS 564
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
++E+A AIL LC + + G +L +++ G D+AK A L L++
Sbjct: 565 PRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ 621
Score = 97 (39.2 bits), Expect = 3.9e-21, Sum P(3) = 3.9e-21
Identities = 29/138 (21%), Positives = 66/138 (47%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL 562
I +GA+ ++ +L SP+ + QE ++ L NLS + + I + + +V LK+ ++
Sbjct: 383 IAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSM 442
Query: 563 AV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620
+ L ++ + +V + +G + ++ LLE G+ ++ A + LC +
Sbjct: 443 EARENAAATLFSLSVIDENKVAI-GAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQG 501
Query: 621 QYCKLVMNEGVIPSLVKI 638
+ V G++ L ++
Sbjct: 502 NKSRAVKG-GIVDPLTRL 518
Score = 72 (30.4 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 38/169 (22%), Positives = 76/169 (44%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543
E ++ L+ LS IV +GA+ I+ +L + + + +E A L +LS + +
Sbjct: 405 EHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVA 464
Query: 544 IAPSEFLPKLVPFLKDATLA--VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
I + + L+ L++ T + N+C + + V+ G + + LL+
Sbjct: 465 IGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVK-GGIVDPLTRLLKDAG 523
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
+ A+AIL L + ++ + E IP LV+I G+ + + +A
Sbjct: 524 GGMVDEALAILAILSTNQEGKTAIAEAES-IPVLVEIIRTGSPRNRENA 571
Score = 53 (23.7 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 40/177 (22%), Positives = 78/177 (44%)
Query: 26 TQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAIGKAKSLLQYCSESSKLYLAITG 85
T LS F E + V +E + + + G +A+ + A+ + L + + SKL+
Sbjct: 45 TLLSPFFEELIDV--NVELKKDQIT-GFEAMRI---ALDSSLELFRSVNGGSKLFQLFDR 98
Query: 86 GVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREATFILDSSDEEAGKVLRE 145
+V + T +E +LSQI P +E+S+ ++RE +L + A + E
Sbjct: 99 DSLVEKFRDMTVEIEAALSQI----PYE-KIEVSE---EVREQVQLLHFQFKRAKERWEE 150
Query: 146 L---LQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIKK-LLDKVGDSD 198
L D++ +++ + L+ + L +T+ + E +I + L GD D
Sbjct: 151 SDLQLSHDLAMAENVMDPDPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGDPD 207
Score = 44 (20.5 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 592 SVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
S+ E L G+ E Q A L L + + G IP LV++
Sbjct: 349 SLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVEL 395
Score = 38 (18.4 bits), Expect = 4.3e-15, Sum P(3) = 4.3e-15
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSG 461
V+PL R L+DA A I LA +S N+ G
Sbjct: 512 VDPLTRLLKDAGGGMVDEALAI-----LAILSTNQEG 543
>TAIR|locus:2013990 [details] [associations]
symbol:AT1G71020 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC016972
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AC008148 HOGENOM:HOG000238412 EMBL:AY075626 EMBL:AY142062
EMBL:AK220971 IPI:IPI00534706 PIR:E96734 RefSeq:NP_177258.3
UniGene:At.43068 HSSP:Q8VZ40 ProteinModelPortal:Q9C9A6 SMR:Q9C9A6
IntAct:Q9C9A6 PaxDb:Q9C9A6 PRIDE:Q9C9A6 EnsemblPlants:AT1G71020.1
GeneID:843442 KEGG:ath:AT1G71020 TAIR:At1g71020 eggNOG:NOG261082
InParanoid:Q9C9A6 OMA:FQARESS PhylomeDB:Q9C9A6
ProtClustDB:CLSN2681864 Genevestigator:Q9C9A6 Uniprot:Q9C9A6
Length = 628
Score = 216 (81.1 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 256 QTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315
+++NL+ IPE F CP+SL LM DP ++ +GQT+ER +IQ+W + GN +CPKT+ KL
Sbjct: 237 KSDNLT---IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLEN 293
Query: 316 QSLTPNTAMKDLISKWC 332
+LTPN ++ LIS+WC
Sbjct: 294 FTLTPNYVLRSLISQWC 310
Score = 146 (56.5 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 57/252 (22%), Positives = 112/252 (44%)
Query: 412 DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDXXX 471
DN++ ++ + L++ L D +++ + C L L+ N+ I
Sbjct: 374 DNRIL--IAEAGAIPVLVKLLTSDGDT-ETQENAVTCILNLSIYEHNKELIMLAGAVTSI 430
Query: 472 XXXXXXXXXXXTEETLAILVALSSYAYFISKIV--ASGALASILNMLDSPNGKFQELAIK 529
E A L +LS +KI+ ASGA+ +++++L + + ++ A
Sbjct: 431 VLVLRAGSMEARENAAATLFSLSLADE--NKIIIGASGAIMALVDLLQYGSVRGKKDAAT 488
Query: 530 ILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT---LAVSCLVILKNMCNTEHARVCVVET 586
L NL + + + LV L D++ +A L IL + + + A+ ++
Sbjct: 489 ALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRA 548
Query: 587 SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKA 646
+ +P + + L+ ++E+A AILLCLC + + + G + L+++S G ++A
Sbjct: 549 NA-IPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERA 607
Query: 647 KVSALELRRLLR 658
K A L LLR
Sbjct: 608 KRKANSLLELLR 619
Score = 50 (22.7 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 585 ETSGCLPSVAELL-EIGSE--EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY 641
+ SG + ++ L+ ++ S+ ED+ AV+ + L + L+ G IP LVK+
Sbjct: 335 DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS 394
Query: 642 GND 644
D
Sbjct: 395 DGD 397
>UNIPROTKB|Q0IMG9 [details] [associations]
symbol:SPL11 "E3 ubiquitin-protein ligase SPL11"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA] [GO:0031348 "negative regulation of
defense response" evidence=IMP] [GO:0043069 "negative regulation of
programmed cell death" evidence=IMP] [GO:0048586 "regulation of
long-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
GO:GO:0006952 SUPFAM:SSF48371 GO:GO:0031348 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0043069 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0009908 GO:GO:0004842 GO:GO:0000151
EMBL:DP000011 EMBL:AP008218 GO:GO:0048586 eggNOG:NOG242845
EMBL:AY652589 EMBL:AY652590 EMBL:AK105835 RefSeq:NP_001067077.2
UniGene:Os.21174 ProteinModelPortal:Q0IMG9 SMR:Q0IMG9
GeneID:4352575 KEGG:dosa:Os03t0275900-01 KEGG:dosa:Os12t0570000-01
KEGG:osa:4352575 Gramene:Q0IMG9 Uniprot:Q0IMG9
Length = 694
Score = 232 (86.7 bits), Expect = 6.8e-24, Sum P(3) = 6.8e-24
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 257 TNNLSRAI-IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315
+N SR I IP+ F+CP+SL LM DPV++ +GQT+ER I+KW G+HTCP T+ K+
Sbjct: 264 SNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMST 323
Query: 316 QSLTPNTAMKDLISKWC 332
+LTPN ++ LIS+WC
Sbjct: 324 SALTPNYVLRSLISQWC 340
Score = 114 (45.2 bits), Expect = 6.8e-24, Sum P(3) = 6.8e-24
Identities = 35/136 (25%), Positives = 69/136 (50%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL 562
I +GA+ +L++L S + + QE A+ L NLS D ++ I S +P +V LK+ ++
Sbjct: 405 IAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSM 464
Query: 563 AV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620
+ L ++ + +V + G +P++ LL GS+ ++ A A L LC +
Sbjct: 465 EARENAAATLFSLSVIDEYKV-TIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQG 523
Query: 621 QYCKLVMNEGVIPSLV 636
+ + G++P ++
Sbjct: 524 NKGRAI-RAGLVPLIM 538
Score = 108 (43.1 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 51/264 (19%), Positives = 109/264 (41%)
Query: 427 PLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEET 486
PL+ L + DL ++ + L L+ N++ I E
Sbjct: 412 PLLLSLLSSSDLR-TQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENA 470
Query: 487 LAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546
A L +LS + I GA+ +++ +L + + ++ A L NL +
Sbjct: 471 AATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIR 530
Query: 547 SEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEED 604
+ +P ++ + + T A+ + IL + + + + +P + E++ G+ +
Sbjct: 531 AGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEP-VPVLVEMIGSGTPRN 589
Query: 605 QEHAVAILLCLCSQRDQYCKLVMNE--GVIPSLVKISVYGNDKAKVSALEL-RRLLRDVA 661
+E+A A++L LCS L + G++ L ++++ G D+ K A++L R+ R +
Sbjct: 590 RENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSRFLV 649
Query: 662 YSVEQQCFGSEIDTSKDASSDPRK 685
E+Q S+ + P +
Sbjct: 650 QQQEEQESQSQASAQVPPQATPEQ 673
Score = 54 (24.1 bits), Expect = 6.8e-24, Sum P(3) = 6.8e-24
Identities = 29/121 (23%), Positives = 52/121 (42%)
Query: 27 QLSKFVERIAKVFPEIEAARPRC---SSGVQ---ALCLLNNAIGKAKSLLQYCSESSKLY 80
QL RI + P +E R R G + AL L +A+ A +LL+ E S++
Sbjct: 52 QLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLADALEAALALLRLGREGSRIS 111
Query: 81 LAITGGVIVSRCMRSTNMMEQSLSQI---ESMVPVMLAVEISQIIDDLREATFILDSSDE 137
L + ++ + +EQ+L I E + + ++ + L+ A +D D+
Sbjct: 112 LVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDD 171
Query: 138 E 138
E
Sbjct: 172 E 172
>TAIR|locus:2162276 [details] [associations]
symbol:PUB15 "Plant U-Box 15" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0006944 "cellular membrane
fusion" evidence=RCA] [GO:0030048 "actin filament-based movement"
evidence=RCA] [GO:0048610 "cellular process involved in
reproduction" evidence=RCA] [GO:0048868 "pollen tube development"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 EMBL:AB016888 GO:GO:0000151 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK175585 IPI:IPI00547462 RefSeq:NP_199049.2
UniGene:At.51075 ProteinModelPortal:Q681N2 SMR:Q681N2 PaxDb:Q681N2
PRIDE:Q681N2 EnsemblPlants:AT5G42340.1 GeneID:834240
KEGG:ath:AT5G42340 TAIR:At5g42340 eggNOG:NOG263115
InParanoid:Q681N2 OMA:CCHDGSK PhylomeDB:Q681N2
ProtClustDB:CLSN2681658 Genevestigator:Q681N2 Uniprot:Q681N2
Length = 660
Score = 216 (81.1 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 37/69 (53%), Positives = 52/69 (75%)
Query: 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
I+P F CP++L +M DPV+I +GQT+E+ IQKWF+ G+ TCPKT+ +L SL PN A
Sbjct: 289 ILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFA 348
Query: 324 MKDLISKWC 332
+K+LI +WC
Sbjct: 349 LKNLIMQWC 357
Score = 101 (40.6 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 41/176 (23%), Positives = 81/176 (46%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543
E + A L +LS I S + ++++L + ++ A+ L NLS + +
Sbjct: 480 ENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGR 539
Query: 544 IAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
+ + L+ LKD L + L IL + + R + + S + ++ E + G+
Sbjct: 540 AIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLS-FIETLVEFIRQGT 598
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657
+++E A ++LL L S + + GV LV+I+ G ++A+ A L +L+
Sbjct: 599 PKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKANALIQLI 654
Score = 100 (40.3 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 34/143 (23%), Positives = 70/143 (48%)
Query: 512 ILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLK--DATLAVSCLV 568
++ L S + Q ++K + L+ + + + IA + +P LV L D+ + + +
Sbjct: 384 LVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVT 443
Query: 569 ILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN 628
L N+ + + ++ G +P++ E+LE G+ E +E++ A L L + + ++
Sbjct: 444 TLLNL-SIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLS 502
Query: 629 EGVIPSLVKISVYGNDKAKVSAL 651
G IP LV + +G + K AL
Sbjct: 503 NG-IPPLVDLLQHGTLRGKKDAL 524
Score = 82 (33.9 bits), Expect = 3.5e-21, Sum P(3) = 3.5e-21
Identities = 28/139 (20%), Positives = 67/139 (48%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE-FLPKLVPFLKDAT 561
I +GA+ ++ +L P+ QE A+ L NLS D ++ + +E +P ++ L++
Sbjct: 417 IANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSID-EVNKKLISNEGAIPNIIEILENGN 475
Query: 562 LAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619
+ L ++ + +V + ++G +P + +LL+ G+ ++ A+ L L
Sbjct: 476 REARENSAAALFSLSMLDENKVTIGLSNG-IPPLVDLLQHGTLRGKKDALTALFNLSLNS 534
Query: 620 DQYCKLVMNEGVIPSLVKI 638
+ + + G++ L+ +
Sbjct: 535 ANKGRAI-DAGIVQPLLNL 552
Score = 76 (31.8 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 34/141 (24%), Positives = 56/141 (39%)
Query: 3 TDESEIVEIWSSPTSFK-VHHGMCTQLSKFVERIAKVFPEIEAAR-PRCSSGVQALCLLN 60
+D IVE ++ C L + ++ + EI P C L L
Sbjct: 55 SDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRGFESPSCK---HFLNRLR 111
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQI---ESMVPVMLAVE 117
AK LL+ CS SK+Y+A+ G +++R + + L + E M+ E
Sbjct: 112 KVFLAAKKLLETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAKDE 171
Query: 118 ISQIIDDLREATFILDSSDEE 138
I + L++A D+ D E
Sbjct: 172 IDSLCKQLKKAKRRTDTQDIE 192
Score = 73 (30.8 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
Identities = 37/152 (24%), Positives = 72/152 (47%)
Query: 502 KIVAS-GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA 560
K++++ GA+ +I+ +L++ N + +E + L +LS + + I S +P LV L+
Sbjct: 456 KLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHG 515
Query: 561 TLA--VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
TL L L N+ + ++ +G + + LL+ + + A++ILL L S
Sbjct: 516 TLRGKKDALTALFNLSLNSANKGRAID-AGIVQPLLNLLKDKNLGMIDEALSILLLLASH 574
Query: 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
+ + + I +LV+ G K K A
Sbjct: 575 PEGR-QAIGQLSFIETLVEFIRQGTPKNKECA 605
Score = 48 (22.0 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 107 ESMVPVMLAVEIS-QIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKAL 165
+S + LA ++ Q IDDL+ T + S ++ G + E Q + ++ +F +++ L
Sbjct: 210 DSAIIERLAKKLELQTIDDLKTETIAIQSLIQDKGGLNIETKQHIIELLN--KFKKLQGL 267
Query: 166 Q 166
+
Sbjct: 268 E 268
Score = 37 (18.1 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 418 SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI 462
++ +F+E L+ F+R + A + LL S N S I
Sbjct: 580 AIGQLSFIETLVEFIRQGTPKNKECATSV----LLELGSNNSSFI 620
>TAIR|locus:2181077 [details] [associations]
symbol:SAUR21 "SMALL AUXIN UP RNA 21" species:3702
"Arabidopsis thaliana" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AL162351
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:BT015367 EMBL:BT015725
EMBL:AK229397 IPI:IPI00524109 PIR:T48204 RefSeq:NP_195803.1
UniGene:At.33496 ProteinModelPortal:Q9LZW3 SMR:Q9LZW3 PRIDE:Q9LZW3
EnsemblPlants:AT5G01830.1 GeneID:831850 KEGG:ath:AT5G01830
TAIR:At5g01830 eggNOG:NOG307369 InParanoid:Q9LZW3 OMA:IPADFRC
PhylomeDB:Q9LZW3 ProtClustDB:CLSN2687143 Genevestigator:Q9LZW3
Uniprot:Q9LZW3
Length = 674
Score = 206 (77.6 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
Identities = 66/223 (29%), Positives = 109/223 (48%)
Query: 114 LAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIK--ALQLAASR 171
L ++S ++D L F D SD+ + L LL + S DS++F + + AL+ +
Sbjct: 132 LVTDLSTVLDILPLHDF--DLSDD--AQDLISLLTKQCS--DSVQFVDARDVALRRKVTD 185
Query: 172 LCITSPKAILIEKRSIKKLLDKVGDSDQSKIXXXXXXXXXXXXXGNSVLGEQKDNACAQE 231
I + ++ K+ + +G SD + + + ++ +A A
Sbjct: 186 TIAGIKHQISPDHSTLIKIFNDLGLSDSASLTDEIQRLEDEI---QDQIDDRSKSAAASL 242
Query: 232 EG--SYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQT 289
G Y+ C + + D + + +LS A IP F+CP++L LM DPVV+ +GQT
Sbjct: 243 IGLVRYSKCVL-YGPSTPAPDFR---RHQSLSDANIPADFRCPITLELMRDPVVVATGQT 298
Query: 290 FERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC 332
++R I W + G++TCPKT L SL PN A+K+LI WC
Sbjct: 299 YDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWC 341
Score = 103 (41.3 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
Identities = 53/192 (27%), Positives = 89/192 (46%)
Query: 501 SKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA 560
+K++ S L L++ DS NG EL + L SD ++ IA + +PKLV +L
Sbjct: 368 TKMMVS-FLIEKLSVADS-NGVVFEL--RAL--AKSDTVARACIAEAGAIPKLVRYLATE 421
Query: 561 --TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSE-EDQEHAVAILLCLCS 617
+L ++ + + N+ E + ++ET G L V E+L G+ E + +A A L L
Sbjct: 422 CPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATWEAKANAAATLFSLAG 481
Query: 618 QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFGSEIDTS- 676
+L V+ LV ++ G +K AL +L VA E++ G ++
Sbjct: 482 VSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVA--ILNLVA---ERENVGRFVEAGV 536
Query: 677 KDASSDPRKEKP 688
A+ D +E P
Sbjct: 537 MGAAGDAFQELP 548
Score = 57 (25.1 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 10 EIWS-SPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQA--LCL--LNNAIG 64
EI S P F + + + K V+ +A VF E+ R + Q+ LC + +
Sbjct: 43 EISSMQPLPFILRRNSLSLIRK-VKILASVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQ 101
Query: 65 KAKSLLQYCSESSKLYLAI 83
+ KSL+ CS SKL+L +
Sbjct: 102 RIKSLIDDCSRVSKLWLLL 120
>TAIR|locus:2079706 [details] [associations]
symbol:PUB9 "plant U-box 9" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0071215 "cellular response to abscisic
acid stimulus" evidence=IMP] [GO:0046777 "protein
autophosphorylation" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005886 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 GO:GO:0009738
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0071215 GO:GO:0004842 GO:GO:0000151
EMBL:AC009853 HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY075636
IPI:IPI00538175 RefSeq:NP_566304.1 UniGene:At.21635
ProteinModelPortal:Q9SRT0 SMR:Q9SRT0 STRING:Q9SRT0 PaxDb:Q9SRT0
PRIDE:Q9SRT0 EnsemblPlants:AT3G07360.1 GeneID:819924
KEGG:ath:AT3G07360 TAIR:At3g07360 eggNOG:NOG271821
InParanoid:Q9SRT0 OMA:LIREMIS PhylomeDB:Q9SRT0
ProtClustDB:CLSN2917129 Genevestigator:Q9SRT0 Uniprot:Q9SRT0
Length = 460
Score = 224 (83.9 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 38/67 (56%), Positives = 51/67 (76%)
Query: 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMK 325
PE F+CPLS LM DPVV+ SGQT+++++IQKW GN TCPKT+ L +LTPN ++
Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIR 134
Query: 326 DLISKWC 332
++ISKWC
Sbjct: 135 EMISKWC 141
Score = 66 (28.3 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 30/126 (23%), Positives = 54/126 (42%)
Query: 518 SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA----TLAV--SCLVILK 571
+P+ K QE + L N+S D + P ++P L DA T+A + +
Sbjct: 226 NPDEKLQEDVVTTLLNISIHDDSNKKLVCEN--PNVIPLLIDALRRGTVATRSNAAAAIF 283
Query: 572 NMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGV 631
+ + +V ++ SG L + +LLE G+ + A + LC + + V +G
Sbjct: 284 TLSALDSNKV-LIGKSGILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAV-RDGA 341
Query: 632 IPSLVK 637
+ L K
Sbjct: 342 VRVLGK 347
Score = 45 (20.9 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 184 KRSIKKLLDKVGDSD 198
KR +KKLL K+ D D
Sbjct: 21 KREMKKLLIKIDDED 35
>TAIR|locus:2013688 [details] [associations]
symbol:PUB17 "plant U-box 17" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0009626
"plant-type hypersensitive response" evidence=IGI] [GO:0009814
"defense response, incompatible interaction" evidence=IMP]
[GO:0009817 "defense response to fungus, incompatible interaction"
evidence=IGI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009817 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 UniGene:At.17411 EMBL:AC068667
GO:GO:0000151 eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
HSSP:Q8VZ40 EMBL:AY064045 EMBL:AY150512 IPI:IPI00523315 PIR:A86416
RefSeq:NP_174228.1 UniGene:At.27415 ProteinModelPortal:Q9C7R6
SMR:Q9C7R6 IntAct:Q9C7R6 STRING:Q9C7R6 PRIDE:Q9C7R6
EnsemblPlants:AT1G29340.1 GeneID:839808 KEGG:ath:AT1G29340
TAIR:At1g29340 InParanoid:Q9C7R6 PhylomeDB:Q9C7R6
ProtClustDB:CLSN2679704 Genevestigator:Q9C7R6 Uniprot:Q9C7R6
Length = 729
Score = 246 (91.7 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 102/416 (24%), Positives = 172/416 (41%)
Query: 251 RK-FGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKT 309
RK F AQ + +P+ F CP+SL LM DPV+I +GQT++R I +W EEG+ TCPKT
Sbjct: 290 RKGFVAQEIGDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKT 349
Query: 310 KMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKI 369
L+ + PN A+K+LI +WC S ++ D N S S K
Sbjct: 350 GQMLMDSRIVPNRALKNLIVQWCT--ASGISYESEFTDSPNESFAS--------ALPTKA 399
Query: 370 ADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLI 429
A +N+ + I + L + + Q + + + ++ + L
Sbjct: 400 AVEANKATV-----SILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLC 454
Query: 430 RFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE--DXXXXXXXXXXXXXXTEETL 487
R L + ++ + L L+ KN+S I + + E
Sbjct: 455 RLLTSENAI--AQENSVTAMLNLSIYEKNKSRIMEEGDCLESIVSVLVSGLTVEAQENAA 512
Query: 488 AILVALSSYAYFISKIVASGALASILNML---DSPNGKFQELAIKILHNLSSDVDIQSHI 544
A L +LS+ + +I L +L +P GK A+ L+NLS+ D S +
Sbjct: 513 ATLFSLSAVHEYKKRIAIVDQCVEALALLLQNGTPRGKKD--AVTALYNLSTHPDNCSRM 570
Query: 545 APSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEED 604
+ LV LK+ +A L + + + + + ++ G+
Sbjct: 571 IEGGGVSSLVGALKNEGVAEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMRCGTPRG 630
Query: 605 QEHAVAILLCLC-SQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLR 658
+E+AVA LL LC S + V+ I L++ ++ G +A+ A L R+ +
Sbjct: 631 KENAVAALLELCRSGGAAVAEKVLRAPAIAGLLQTLLFTGTKRARRKAASLARVFQ 686
Score = 225 (84.3 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 88/303 (29%), Positives = 138/303 (45%)
Query: 45 ARPRCSSGVQA----LCL--LNNAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNM 98
AR R S V LCL L + ++K L+ YC++SSKL+L + I S N
Sbjct: 90 ARRRSKSSVSESTALLCLKELYLLLYRSKILVDYCAQSSKLWLLLQNPSI-SGYFHDLN- 147
Query: 99 MEQSLSQIESMVPVM---LAVEISQIIDDL----REATFILDSSDEEAGKVLRELLQEDV 151
Q +S + ++PV L+ +I + I+ L R+A +D +DE LRE +
Sbjct: 148 --QEISTLLDVLPVNDLGLSDDIREQIELLQRQSRKARLYIDKNDES----LRESFYSFL 201
Query: 152 SAIDSLEF-SEIKALQLAASRLCITSPKAILIEKRSIKKLLDKVGDSDQSKIXXXXXXXX 210
++ + S + +L I K+ E +++ + D D
Sbjct: 202 DGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEIEFLEEQIVN-HDGDLEPTGSVINGFV 260
Query: 211 XXXXXGNSVL-GEQKDNACAQEEGSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVF 269
+L G ++D E + + F V +GD F +P+ F
Sbjct: 261 AITRYCRFLLFGFEEDGMEWWIENNPKKPRKGF-VAQEIGDT-F---------ITVPKDF 309
Query: 270 KCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLIS 329
CP+SL LM DPV+I +GQT++R I +W EEG+ TCPKT L+ + PN A+K+LI
Sbjct: 310 VCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIV 369
Query: 330 KWC 332
+WC
Sbjct: 370 QWC 372
>UNIPROTKB|Q6EUK7 [details] [associations]
symbol:PUB4 "U-box domain-containing protein 4"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:AP008208
EMBL:CM000139 GO:GO:0000151 EMBL:AP004030 EMBL:AK062592
RefSeq:NP_001046379.1 UniGene:Os.5133 ProteinModelPortal:Q6EUK7
EnsemblPlants:LOC_Os02g13960.1 GeneID:4328818
KEGG:dosa:Os02t0234300-01 KEGG:osa:4328818 Gramene:Q6EUK7
eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
ProtClustDB:CLSN2692596 Uniprot:Q6EUK7
Length = 728
Score = 193 (73.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
+P+ F CP+SL LM DPVV +GQT++R I +W EEG+ TCP + L L PN A+
Sbjct: 297 VPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRAL 356
Query: 325 KDLISKWC 332
+ LIS+WC
Sbjct: 357 RSLISQWC 364
Score = 97 (39.2 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 47/175 (26%), Positives = 81/175 (46%)
Query: 483 TEETLAILVALSSYAYFISKIVASGALASIL-NMLDSPNGKFQELAIKILHNLS-SDVDI 540
+ E +A VA S + + + A+ A A IL ML+ + + +A K + L+ +
Sbjct: 376 SNEGMAECVAASCSSR--AAMEANKATARILVRMLEDGSENVKAVAAKEIRLLAKTGKQN 433
Query: 541 QSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598
++ IA +P L L D + + L N+ E + ++E GCL + +L+
Sbjct: 434 RAFIADLGAIPLLCRLLLSNDWMAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQ 493
Query: 599 IG-SEEDQEHAVAILLCLCSQRDQYCKLVMNE-GVIPSLVKISVYGNDKAKVSAL 651
G + E +E+A A L L S + KL+MNE G + L + G + K A+
Sbjct: 494 NGWTTEAKENAAATLFSL-SVVHNFKKLIMNEPGAVEELASMLTKGTSRGKKDAV 547
Score = 88 (36.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 43/176 (24%), Positives = 81/176 (46%)
Query: 484 EETLAILVALSSYAYFISKIVAS--GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541
E A L +LS F K++ + GA+ + +ML + ++ A+ L NLS+ +
Sbjct: 502 ENAAATLFSLSVVHNF-KKLIMNEPGAVEELASMLTKGTSRGKKDAVMALFNLSTHPESS 560
Query: 542 SHIAPSEFLPKLVPFLKDATL---AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598
+ + S + L+ L++ T+ A L +L + H V + + S+ L+
Sbjct: 561 ARMLESCAVVALIQSLRNDTVSEEAAGALALLMKQPSIVHL---VGSSETVITSLVGLMR 617
Query: 599 IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSL---VK-ISVYGNDKAKVSA 650
G+ + +E+AV+ L +C + LV IP L ++ I++ G +AK A
Sbjct: 618 RGTPKGKENAVSALYEICRRGGS--ALVQRVAKIPGLNTVIQTITLNGTKRAKKKA 671
Score = 48 (22.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 51/231 (22%), Positives = 92/231 (39%)
Query: 428 LIRFLRD-ARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEET 486
L+R L D + ++ A+ I RLL +NR+ I L E
Sbjct: 404 LVRMLEDGSENVKAVAAKEI--RLLAKTGKQNRAFIADLGAIPLLCRLLLSNDWMAQENA 461
Query: 487 LAILVALSSYAYFISKIVAS-GALASILNMLDSP-NGKFQELAIKILHNLSSDVDIQSHI 544
+ L+ LS + +I+ G L I+ +L + + +E A L +LS + + I
Sbjct: 462 VTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVHNFKKLI 521
Query: 545 APSE-FLPKLVPFLKDATLA--VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
+ +L L T ++ L N+ + ++E+ + + L
Sbjct: 522 MNEPGAVEELASMLTKGTSRGKKDAVMALFNLSTHPESSARMLESCAVVALIQSLRNDTV 581
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLV-MNEGVIPSLVKISVYGNDKAKVSAL 651
E+ A+A+L+ ++ LV +E VI SLV + G K K +A+
Sbjct: 582 SEEAAGALALLM----KQPSIVHLVGSSETVITSLVGLMRRGTPKGKENAV 628
>TAIR|locus:2097390 [details] [associations]
symbol:AT3G49810 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR EMBL:AL132965 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:BT029174
EMBL:AY084697 IPI:IPI00522796 PIR:T46047 RefSeq:NP_566927.1
UniGene:At.43608 UniGene:At.71195 ProteinModelPortal:Q058P4
SMR:Q058P4 IntAct:Q058P4 PRIDE:Q058P4 EnsemblPlants:AT3G49810.1
GeneID:824143 KEGG:ath:AT3G49810 TAIR:At3g49810 eggNOG:NOG289804
HOGENOM:HOG000077474 InParanoid:Q058P4 OMA:ELRKMMD PhylomeDB:Q058P4
ProtClustDB:CLSN2686657 Genevestigator:Q058P4 Uniprot:Q058P4
Length = 448
Score = 173 (66.0 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP VF CP+SL M DPV + +GQT+ER+ I KWF G+ TCP T +L ++TPN +
Sbjct: 64 IPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVTPNKTL 123
Query: 325 KDLISKW 331
LI W
Sbjct: 124 HHLIYTW 130
Score = 103 (41.3 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 39/164 (23%), Positives = 76/164 (46%)
Query: 499 FISKIVASGAL-ASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPF 556
F +++V+S +L ++ ++ D + A+++L +S ++S + +P+LV
Sbjct: 264 FRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRLLKPISVHKQVRSLMVSIGAVPQLVDI 323
Query: 557 LK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614
L D L +L +C RV V +++ +P +L SE +A++IL
Sbjct: 324 LPSLDPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWS 383
Query: 615 LCSQRDQYCK-LVMNEGVIPSLVKISVYGNDKA-KVSALELRRL 656
+C + C L + G+ L+ + G D A K + EL +L
Sbjct: 384 VCKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALKQRSAELLKL 427
Score = 75 (31.5 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 37/173 (21%), Positives = 79/173 (45%)
Query: 485 ETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544
E +AILV+L + S ++ ++ I++ML+ + + + +++ L + ++ +
Sbjct: 209 EVVAILVSLDLDSDSKSGLMQPAKVSLIVDMLNDGSNETKINCARLIRGLVEEKGFRAEL 268
Query: 545 APSE-FLPKLVPFLKDATL--AVS-CLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG 600
S L L+ +KD VS L +LK + + R +V G +P + ++L
Sbjct: 269 VSSHSLLVGLMRLVKDKRHRNGVSPALRLLKPISVHKQVRSLMVSI-GAVPQLVDILPSL 327
Query: 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALEL 653
E E A+ +L LC+ + + + IP V++ + ++ AL +
Sbjct: 328 DPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSI 380
Score = 74 (31.1 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 36/139 (25%), Positives = 65/139 (46%)
Query: 487 LAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546
L +L +S + S +V+ GA+ ++++L S + + ELA+ +L L +DV+ + +
Sbjct: 295 LRLLKPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLELALFVLDALCTDVEGRVAVKD 354
Query: 547 SEFLPKLVPFLKDATLAVS--C----LVILKNMCNT--EHARVCVVETSGCLPSVAELLE 598
S +P+ + VS C L IL ++C E VE G + +++
Sbjct: 355 SA---NTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSPLAVEV-GLAAKLLLVIQ 410
Query: 599 IGSEEDQEHAVAILLCLCS 617
G + + A LL LCS
Sbjct: 411 SGCDAALKQRSAELLKLCS 429
Score = 63 (27.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 29/140 (20%), Positives = 61/140 (43%)
Query: 503 IVASGALASILNMLD--SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA 560
+V G ++ I ++L + + E+ + IL +L D D +S + + +V L D
Sbjct: 185 VVEEGGVSVISSLLGPFTSHAVGSEV-VAILVSLDLDSDSKSGLMQPAKVSLIVDMLNDG 243
Query: 561 T--LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
+ ++C +++ + + R +V + L + L++ + LL S
Sbjct: 244 SNETKINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRLLKPISV 303
Query: 619 RDQYCKLVMNEGVIPSLVKI 638
Q L+++ G +P LV I
Sbjct: 304 HKQVRSLMVSIGAVPQLVDI 323
>TAIR|locus:2152049 [details] [associations]
symbol:AT5G65920 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AL021684 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB018108
HSSP:Q8VZ40 HOGENOM:HOG000077474 ProtClustDB:CLSN2686657
EMBL:AY062476 EMBL:AY093259 IPI:IPI00534056 PIR:T05882
RefSeq:NP_201393.1 UniGene:At.27331 UniGene:At.74058
ProteinModelPortal:Q9FHN9 SMR:Q9FHN9 EnsemblPlants:AT5G65920.1
GeneID:836721 KEGG:ath:AT5G65920 TAIR:At5g65920 eggNOG:NOG268350
InParanoid:Q9FHN9 OMA:CKLASEE PhylomeDB:Q9FHN9
Genevestigator:Q9FHN9 Uniprot:Q9FHN9
Length = 444
Score = 166 (63.5 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 33/67 (49%), Positives = 41/67 (61%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP VF CP+SL M DPV + +GQT+ER I KWF G+ TCP T +L +TPN +
Sbjct: 60 IPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTL 119
Query: 325 KDLISKW 331
LI W
Sbjct: 120 HQLIYTW 126
Score = 106 (42.4 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 38/164 (23%), Positives = 77/164 (46%)
Query: 499 FISKIVASGAL-ASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPF 556
F +++V+S +L ++ ++ D A+ +L ++S +++ + +P+LV
Sbjct: 260 FRAELVSSHSLLVGLMRLVKDRRRRNGVSPALTLLKSVSVHKQVRNLLVRIGAVPQLVDV 319
Query: 557 LK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614
L D S L +L ++C R+ + ++ +P LL SE+ +A++IL
Sbjct: 320 LPCLDVECLESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSEKCTNYAISILWS 379
Query: 615 LCSQRDQYCK-LVMNEGVIPSLVKISVYGNDKA-KVSALELRRL 656
+C + C L + G+ L+ + G D A K + EL +L
Sbjct: 380 VCKLASEECSSLAVEVGLAAKLLLVIQSGCDPALKQRSAELLKL 423
Score = 71 (30.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 34/148 (22%), Positives = 64/148 (43%)
Query: 497 AYFISK--IVASGALASILNMLDSP--NGKFQELAIKILHNLSSDVDIQSHIAPSEFLPK 552
A+ I+K +V G + I ++L SP + AI IL NL D D ++ + +
Sbjct: 173 AHAIAKKTVVDEGGVFVISSLL-SPFTSHAVGSEAIAILVNLELDSDSKAGLMQPARVSL 231
Query: 553 LVPFLKDATLA--VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610
+V L D ++ ++C ++ + + R +V + L + L++ +
Sbjct: 232 MVDMLNDGSIETKINCARLIGRLVEEKGFRAELVSSHSLLVGLMRLVKDRRRRNGVSPAL 291
Query: 611 ILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
LL S Q L++ G +P LV +
Sbjct: 292 TLLKSVSVHKQVRNLLVRIGAVPQLVDV 319
Score = 51 (23.0 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 29/136 (21%), Positives = 62/136 (45%)
Query: 487 LAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546
L +L ++S + + +V GA+ ++++L + + E A+ +L +L + + + +
Sbjct: 291 LTLLKSVSVHKQVRNLLVRIGAVPQLVDVLPCLDVECLESALFVLDSLCLESEGRIALKD 350
Query: 547 S-EFLPKLVPFLKDATLAVS--CLVILKNMCN--TEHARVCVVETSGCLPSVAELLEIGS 601
S +P V L + + + IL ++C +E VE G + +++ G
Sbjct: 351 SVNTIPHTVRLLMKVSEKCTNYAISILWSVCKLASEECSSLAVEV-GLAAKLLLVIQSGC 409
Query: 602 EEDQEHAVAILLCLCS 617
+ + A LL LCS
Sbjct: 410 DPALKQRSAELLKLCS 425
>TAIR|locus:2090604 [details] [associations]
symbol:PUB25 "plant U-box 25" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0010200 "response to chitin"
evidence=IEP] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB025624
HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT025982 EMBL:AY086503
EMBL:AK229923 IPI:IPI00525992 RefSeq:NP_566632.1 UniGene:At.5707
ProteinModelPortal:Q9LT79 SMR:Q9LT79 EnsemblPlants:AT3G19380.1
GeneID:821472 KEGG:ath:AT3G19380 TAIR:At3g19380 eggNOG:NOG262907
InParanoid:Q9LT79 OMA:ECTERAK PhylomeDB:Q9LT79
ProtClustDB:CLSN2682687 Genevestigator:Q9LT79 Uniprot:Q9LT79
Length = 421
Score = 172 (65.6 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHT-CPKTKMKLVCQSLTPNTA 323
IP F+CP+SL LM DPV + +GQT++R I+ W GN+T CP T+ L +L PN
Sbjct: 14 IPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNHT 73
Query: 324 MKDLISKWCM-NLCSSMNDLHVP 345
++ LI +WC+ N + + + P
Sbjct: 74 LRRLIQEWCVANRSNGVERIPTP 96
Score = 93 (37.8 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 39/155 (25%), Positives = 72/155 (46%)
Query: 512 ILNMLDSP--NGKFQELAIKILHNLSSDVDIQSHIAPSEFLPK-LVPFLK---DATLAVS 565
+L++L +P + + ++ IK L L S V HIA + P+ L+ L D
Sbjct: 245 VLDLLRNPISSRRALKIGIKTLFALCS-VKSTRHIAITAGAPEILIDRLAADFDRCDTER 303
Query: 566 CLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKL 625
L ++ +C T E + +P + + + S+ E+A LL LC+ +++ +
Sbjct: 304 ALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWREE 363
Query: 626 VMNEGVIPSLV-KISVYGNDKAKVSALELRRLLRD 659
GV+ L+ + ++AK A +L +LLRD
Sbjct: 364 AAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRD 398
>TAIR|locus:2195563 [details] [associations]
symbol:PUB19 "plant U-box 19" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
InterPro:IPR001841 InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00184 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842 GO:GO:0000151
EMBL:AC004473 HOGENOM:HOG000238412 HSSP:Q8VZ40 eggNOG:NOG251934
ProtClustDB:CLSN2679599 IPI:IPI00530780 PIR:T02271
RefSeq:NP_176225.1 UniGene:At.66059 ProteinModelPortal:O80742
SMR:O80742 PaxDb:O80742 PRIDE:O80742 EnsemblPlants:AT1G60190.1
GeneID:842314 KEGG:ath:AT1G60190 TAIR:At1g60190 InParanoid:O80742
OMA:TELHVAM PhylomeDB:O80742 Genevestigator:O80742 Uniprot:O80742
Length = 686
Score = 170 (64.9 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 237 VCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQ 296
V + +VD D++ + R++ + +CP+SL +M DPVV+ESG T++R I
Sbjct: 252 VILRGIDVDDEEKDKE--EDDLMMVRSLNVDDLRCPISLEIMSDPVVLESGHTYDRSSIT 309
Query: 297 KWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331
KWF GN TCPKT LV L N ++K +I +
Sbjct: 310 KWFASGNITCPKTGKTLVSTVLVDNFSVKQVIQSY 344
Score = 93 (37.8 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 35/161 (21%), Positives = 78/161 (48%)
Query: 489 ILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE 548
I + + ++ S +V +G + S++ +L S + + QE A+ + NLS D+ ++ I +
Sbjct: 398 IRILTKTSTFYRSCLVEAGVVESLMKILRSDDPRIQENAMAGIMNLSKDIAGKTRIVGED 457
Query: 549 F--LPKLVPFLKDAT------LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELL--- 597
L +V L D A + L L ++ +++R+ + E S +P + ++
Sbjct: 458 GGGLRLIVEVLNDGARRESRQYAAAALFYLSSL--GDYSRL-IGEISDAIPGLVRIVKSC 514
Query: 598 EIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
+ G + +AI L +Q D + + ++ G++P L+ +
Sbjct: 515 DYGDSAKRNALIAIRSLLMNQPDNHWR-ILAAGIVPVLLDL 554
Score = 78 (32.5 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 46/178 (25%), Positives = 69/178 (38%)
Query: 487 LAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545
L L +L Y+ I +I A L I+ D + + I I L + D I
Sbjct: 484 LFYLSSLGDYSRLIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQPDNHWRIL 543
Query: 546 PSEFLPKLVPFLKDATLA----VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
+ +P L+ +K ++ + IL M + V+ G L ++L GS
Sbjct: 544 AAGIVPVLLDLVKSEEISDGVTADSMAILAKMAEYPDGMISVLRRGG-LKLAVKIL--GS 600
Query: 602 EE----DQEHAVAILLCLCSQ--RDQYCKLVMNEGVIPSLVKISVYGN--DKAKVSAL 651
E ++H VA+LL LC D L N ++ SL S G K SAL
Sbjct: 601 SEVSPATKQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKASAL 658
Score = 57 (25.1 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 595 ELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-L 653
EL++ G EE+ A+ + L Y ++ GV+ SL+KI + + + +A+ +
Sbjct: 382 ELIK-GDEEEMVKALVEIRILTKTSTFYRSCLVEAGVVESLMKILRSDDPRIQENAMAGI 440
Query: 654 RRLLRDVA 661
L +D+A
Sbjct: 441 MNLSKDIA 448
Score = 50 (22.7 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 564 VSCLVILKNMCNTE-HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY 622
V LV ++ + T R C+VE +G + S+ ++L QE+A+A ++ L
Sbjct: 392 VKALVEIRILTKTSTFYRSCLVE-AGVVESLMKILRSDDPRIQENAMAGIMNLSKDIAGK 450
Query: 623 CKLVMNEG 630
++V +G
Sbjct: 451 TRIVGEDG 458
Score = 47 (21.6 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 483 TEETLAILVALSSYAYFISKIVASGALASILNMLDS----PNGKFQ--ELAIKILHNLSS 536
T +++AIL ++ Y + ++ G L + +L S P K L + + HN S
Sbjct: 565 TADSMAILAKMAEYPDGMISVLRRGGLKLAVKILGSSEVSPATKQHCVALLLNLCHNGGS 624
Query: 537 DV 538
DV
Sbjct: 625 DV 626
Score = 44 (20.5 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 140 GKVLRELLQEDVSAIDSLEFSEI--KALQLAASRLCITSPKAILIEKRSIKKLLDKV 194
G R L V+ +S+ + + LQLA L PK KRS+K+ L V
Sbjct: 7 GSSRRILTFPAVNPCESISLTTLVDSLLQLAGEILSF-KPKHFSTNKRSVKETLRHV 62
>TAIR|locus:2146198 [details] [associations]
symbol:AT5G18330 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC051626 HOGENOM:HOG000238412
ProtClustDB:CLSN2686550 IPI:IPI00538442 RefSeq:NP_197334.1
UniGene:At.54898 ProteinModelPortal:Q3E9F6 SMR:Q3E9F6
EnsemblPlants:AT5G18330.1 GeneID:831951 KEGG:ath:AT5G18330
TAIR:At5g18330 eggNOG:NOG311548 InParanoid:Q3E9F6 OMA:HERTCPR
PhylomeDB:Q3E9F6 Genevestigator:Q3E9F6 Uniprot:Q3E9F6
Length = 445
Score = 162 (62.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 258 NNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317
+++S +P+ F C LS ++M +P++I SGQTFE+ +I +W + TCP+TK L +
Sbjct: 58 SDISPVEVPKEFICTLSNKIMIEPMLIASGQTFEKSYILEWLKH-ERTCPRTKQVLYHRF 116
Query: 318 LTPNTAMKDLISKWCM 333
+ PN + ++I +WC+
Sbjct: 117 MIPNHLINEVIKEWCL 132
Score = 95 (38.5 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 36/158 (22%), Positives = 77/158 (48%)
Query: 498 YFISKIVAS-GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEF-LPKLVP 555
YF++KI S L + L++ + N +F E + LH S+ ++ +A + LP L
Sbjct: 189 YFVAKIPDSITRLLTPLSISEDSNPEFLENIVTALHIFSTSEKNKTLVAENPLVLPLLAK 248
Query: 556 FLKDATLA--VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
++K T+ + + ++ T+ ++ ++ S L ++ ++E G A + L
Sbjct: 249 YMKQGTVLTRIHSAATVNSLSYTDSNKI-IIGNSEVLKALIHVIEEGDSLATSEAFSALS 307
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
LC ++ K V +EG+I + +K G++ + + +L
Sbjct: 308 NLCPVKEISEKAV-SEGLIRAAIKKIKAGSNVSMLLSL 344
>TAIR|locus:2014584 [details] [associations]
symbol:PUB43 "plant U-box 43" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 PROSITE:PS50176 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC012394 GO:GO:0004842
GO:GO:0000151 UniGene:At.16778 UniGene:At.66969 HSSP:Q8VZ40
EMBL:AK226857 IPI:IPI00516849 PIR:E96791 RefSeq:NP_001077833.1
RefSeq:NP_177765.1 ProteinModelPortal:Q9SFX2 SMR:Q9SFX2
PaxDb:Q9SFX2 PRIDE:Q9SFX2 EnsemblPlants:AT1G76390.1
EnsemblPlants:AT1G76390.2 GeneID:843971 KEGG:ath:AT1G76390
TAIR:At1g76390 eggNOG:NOG276937 HOGENOM:HOG000241783
InParanoid:Q9SFX2 OMA:LTKQVMH PhylomeDB:Q9SFX2
ProtClustDB:CLSN2682757 Genevestigator:Q9SFX2 Uniprot:Q9SFX2
Length = 811
Score = 177 (67.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 58/197 (29%), Positives = 105/197 (53%)
Query: 254 GAQTNNLSR---AI--IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNH---- 304
G+Q++N S+ I I E F CPL+ ++M++PV +E+GQTFER I+KWF+E
Sbjct: 9 GSQSDNSSQFEPGIDNIYEAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQP 68
Query: 305 -TCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSL--GSLDTSYG 361
+CP T +L L+P+ A+++ I +W + ND + LDI+ SL G+ +T+
Sbjct: 69 LSCPITSKELSITDLSPSIALRNTIEEW-----RARNDA-LKLDIARQSLYLGNAETNIL 122
Query: 362 SDTSS-NKIADGSNRTPLWTNVHDIDLSRL-TEL----NWDCQCKVIEDYETRLEHDNQV 415
+ +I N + V + L RL T++ + + +CK ++ + +E D +
Sbjct: 123 LALKNVREIC--RNIRKIRQRVCNPQLVRLITDMLKSSSHEVRCKALQTLQVVVEGDEES 180
Query: 416 SHSLSSTNFVEPLIRFL 432
++ + V +++FL
Sbjct: 181 KAIVAEGDTVRTIVKFL 197
Score = 87 (35.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 41/163 (25%), Positives = 69/163 (42%)
Query: 484 EETLAILVALSSYAYFISKIVA-SGALASILNMLDSP--NGKFQELAIKILHNLS-SDVD 539
E +++L LS KI + GA+ ++ + S N E A K L NL S+ +
Sbjct: 206 EAAVSVLFELSKSEALCEKIGSIHGAIILLVGLTSSKSENVSTVEKADKTLTNLERSEEN 265
Query: 540 IQSHIAPSEFLPKLVPFLKDAT-LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598
++ P L L+ + VS L + +V V +T G S+ +L+
Sbjct: 266 VRQMAINGRLQPLLAKLLEGSPETKVSMAFYLGVLALNNDVKVIVAQTVGS--SLIDLMR 323
Query: 599 IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY 641
+E A+ L + S KL++N G++P L+K Y
Sbjct: 324 TRDMSQREAALGALNNISSFEGS-AKLLINTGILPPLIKDLFY 365
Score = 60 (26.2 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 487 LAILVALSSYAYFISKIVA----SGALASILNMLD-SPNGKFQELAIKILHNLS 535
LA+LV L+S + +V+ S A+ S++ ++ N + +IK+LHN+S
Sbjct: 430 LAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIKLLHNIS 483
Score = 49 (22.3 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 17/77 (22%), Positives = 39/77 (50%)
Query: 483 TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQS 542
T+ ++A + + + + IVA +S+++++ + + +E A+ L+N+SS
Sbjct: 289 TKVSMAFYLGVLALNNDVKVIVAQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAK 348
Query: 543 HIAPSEFLPKLVPFLKD 559
+ + LP P +KD
Sbjct: 349 LLINTGILP---PLIKD 362
Score = 47 (21.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/104 (23%), Positives = 46/104 (44%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKDAT 561
+V A+ ++++LD N K A+ L L D +D+ + + + P L
Sbjct: 678 LVEGQAVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVVQGVRLIDEADGITPILN--- 734
Query: 562 LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELL-EIGSEED 604
V+L+N TE+ R+ V + + E+ E+G E++
Sbjct: 735 ------VLLEN--RTENLRIRAVWMVERILRIEEIAREVGEEQN 770
>TAIR|locus:2099634 [details] [associations]
symbol:AT3G03440 "AT3G03440" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000225 InterPro:IPR016024
Pfam:PF00514 PROSITE:PS50176 SMART:SM00185 EMBL:CP002686
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
IPI:IPI00522077 RefSeq:NP_186994.2 UniGene:At.40980
ProteinModelPortal:F4J139 SMR:F4J139 EnsemblPlants:AT3G03440.1
GeneID:821253 KEGG:ath:AT3G03440 OMA:VRDERNK Uniprot:F4J139
Length = 408
Score = 212 (79.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 82/275 (29%), Positives = 127/275 (46%)
Query: 396 DCQCKVIEDYETRLEHDNQVSHSLSS--TNFVEPLIRFLR-DARDLHDSRAQRIGCRLLL 452
DC ++ E R + SH + VEPL+ LR D+ + H A + L
Sbjct: 77 DCDSRLFAAKEIR--RLTKTSHRCRRHFSQAVEPLVSMLRFDSPESHHEAAL-LALLNLA 133
Query: 453 AFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASI 512
KN+ I E A L+ LS+ A I A+G + +
Sbjct: 134 VKDEKNKVSIIEAGALEPIINFLQSNSPTLQEYASASLLTLSASANNKPIIGANGVVPLL 193
Query: 513 LNMLD--SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA-----TLAVS 565
+ ++ SP K A+ L NLS+ D S I ++ L ++ LK + T
Sbjct: 194 VKVIKHGSPQAKAD--AVMALSNLSTLPDNLSMILATKPLSPILNLLKSSKKSSKTSEKC 251
Query: 566 CLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC-SQRDQYCK 624
C +I M + E AR +V G + +V E+LE GS + +EHAV +LL LC S R +Y +
Sbjct: 252 CSLIEALMVSGEEARTGLVSDEGGVLAVVEVLENGSLQAREHAVGVLLTLCQSDRSKYRE 311
Query: 625 LVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659
++ EGVIP L++++V G K+++ A L LLR+
Sbjct: 312 PILREGVIPGLLELTVQGTSKSRIKAQRLLCLLRN 346
Score = 37 (18.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 132 LDSSDEEAGKVLRELLQEDVSAIDSLEFS 160
LD G V ELL VS S+ S
Sbjct: 31 LDCDSPRGGDVDHELLHTAVSVSSSVSVS 59
>TAIR|locus:2194564 [details] [associations]
symbol:PUB18 "plant U-box 18" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;IDA] [GO:0010029 "regulation of seed
germination" evidence=IGI] InterPro:IPR001841 InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00184 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842
EMBL:AC007067 GO:GO:0000151 HOGENOM:HOG000238412 HSSP:Q8VZ40
EMBL:AY075683 IPI:IPI00537444 PIR:B86239 RefSeq:NP_172526.1
UniGene:At.14982 ProteinModelPortal:Q9XIJ5 SMR:Q9XIJ5 PRIDE:Q9XIJ5
EnsemblPlants:AT1G10560.1 GeneID:837597 KEGG:ath:AT1G10560
TAIR:At1g10560 eggNOG:NOG251934 InParanoid:Q9XIJ5 OMA:EPSSKHR
PhylomeDB:Q9XIJ5 ProtClustDB:CLSN2679599 Genevestigator:Q9XIJ5
Uniprot:Q9XIJ5
Length = 697
Score = 165 (63.1 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 258 NNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317
++L R + E CP+SL +M DPVVIE+G T++R I KWF GN TCP T L
Sbjct: 281 HDLIRGLKVEDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTE 340
Query: 318 LTPNTAMKDLISKWC 332
L N +++ +I K C
Sbjct: 341 LVDNVSVRQVIRKHC 355
Score = 85 (35.0 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 45/182 (24%), Positives = 83/182 (45%)
Query: 489 ILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE 548
I V + ++ S +V +GA+ +L +L S + + QE A+ + NLS V +S IA E
Sbjct: 412 IRVQTKTSSFNRSCLVKAGAVTPLLKLLSSVDIRIQENAMAGILNLSKHVTGKSKIA-GE 470
Query: 549 FLPKLVPFLKDAT------LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSE 602
L LV L + + S L L ++ +++R+ + E +P + +++
Sbjct: 471 GLKILVEILNEGAKTETRLYSASALFYLSSV--EDYSRL-IGENPDAIPGLMNIVKGDDY 527
Query: 603 EDQEHAVAIL--LCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660
D A+L + L Q D + + V+ G +P L+ + G ++A L L +
Sbjct: 528 GDSAKRSALLAVMGLLMQSDNHWR-VLAAGAVPILLDLLRSGEISGGLTADCLATLAKLA 586
Query: 661 AY 662
Y
Sbjct: 587 EY 588
Score = 74 (31.1 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 44/179 (24%), Positives = 73/179 (40%)
Query: 490 LVALSSYAYFISKIVASG--ALASILNML--DSPNGKFQELAIKILHNLSSDVDIQSHIA 545
L LSS + S+++ A+ ++N++ D + A+ + L D +
Sbjct: 495 LFYLSSVEDY-SRLIGENPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLLMQSDNHWRVL 553
Query: 546 PSEFLPKLVPFLKDAT----LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
+ +P L+ L+ L CL L + + V+ G L ++L S
Sbjct: 554 AAGAVPILLDLLRSGEISGGLTADCLATLAKLAEYPDGTIGVIRRGG-LKLAVKILS-SS 611
Query: 602 EED----QEHAVAILLCLCSQ--RDQYCKLVMNEGVIPSLVKI---SVYGNDKAKVSAL 651
E+ ++H V ++L LC RD LV N V+ SL + YG K K SAL
Sbjct: 612 EDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSLVMGSLYTVLSNGEYGGSK-KASAL 669
Score = 50 (22.7 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 50 SSGVQALCLLNNAIGKAKSLLQYCS-ESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIES 108
S+ +L ++ K K LL+ C+ + ++L + + + T + SLS
Sbjct: 86 SAAASSLKEIHVGFQKLKFLLEDCTRDGARLCMMMNSDQVSDHLRVLTRSISTSLSAFP- 144
Query: 109 MVPVMLAVEISQIID 123
+ V L E++++ID
Sbjct: 145 VASVDLTTEVNELID 159
Score = 38 (18.4 bits), Expect = 7.2e-12, Sum P(3) = 7.2e-12
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 108 SMVPVMLAVEISQIIDDLREATFILDSSD-EEAGKVLREL--LQEDVSA 153
S + +LA+ +++++ D E ILD + G ++E+ L E++ A
Sbjct: 181 SSINRILALFVNRVVPDPDEINRILDHVGIRKWGDCVKEINFLGEEIDA 229
>TAIR|locus:2012136 [details] [associations]
symbol:PUB26 "plant U-box 26" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC011807 HSSP:Q8VZ40
HOGENOM:HOG000238505 eggNOG:NOG262907 ProtClustDB:CLSN2682687
EMBL:AK118346 EMBL:BT029013 IPI:IPI00542667 PIR:E96534
RefSeq:NP_175400.1 UniGene:At.38168 ProteinModelPortal:Q9FXA4
SMR:Q9FXA4 EnsemblPlants:AT1G49780.1 GeneID:841401
KEGG:ath:AT1G49780 TAIR:At1g49780 InParanoid:Q9FXA4 OMA:CTERAKR
PhylomeDB:Q9FXA4 Genevestigator:Q9FXA4 Uniprot:Q9FXA4
Length = 421
Score = 181 (68.8 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP F+CP+SL LM DPV I +GQT++R I W GN TCP T++ L +L PN +
Sbjct: 14 IPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLIPNHTL 73
Query: 325 KDLISKWCM-NLCSSMNDLHVP 345
+ LI +WC+ N + + + P
Sbjct: 74 RRLIQEWCVANRSNGVERIPTP 95
Score = 64 (27.6 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 38/168 (22%), Positives = 72/168 (42%)
Query: 502 KIVASGA---LASILNMLDSP--NGKFQELAIKILHNLSSDVDIQSHIAPSEFLPK-LVP 555
K++ SG+ +L++L +P + + ++ IK + L V H+A S P L+
Sbjct: 234 KLIISGSDSIFEGVLDLLKNPISSRRALKIGIKAIFALCL-VKQTRHLAISAGAPGILID 292
Query: 556 FLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
L D L ++ +C E + +P + + + S+ E+A L
Sbjct: 293 RLAADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGAL 352
Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLLRD 659
L LC+ ++ G++ L+ + ++AK A L +LLRD
Sbjct: 353 LALCTAEERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRD 400
>TAIR|locus:2093974 [details] [associations]
symbol:PUB29 "plant U-box 29" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA;IDA] [GO:0010200 "response to chitin"
evidence=IEP] [GO:0070696 "transmembrane receptor protein
serine/threonine kinase binding" evidence=IPI] [GO:0009506
"plasmodesma" evidence=IDA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143
GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
EMBL:AB026654 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000238505
ProtClustDB:CLSN2684525 EMBL:AK117976 EMBL:BT005359 IPI:IPI00545400
RefSeq:NP_188501.1 UniGene:At.38506 ProteinModelPortal:Q9LSA6
SMR:Q9LSA6 IntAct:Q9LSA6 ProMEX:Q9LSA6 EnsemblPlants:AT3G18710.1
GeneID:821402 KEGG:ath:AT3G18710 TAIR:At3g18710 eggNOG:NOG292721
InParanoid:Q9LSA6 OMA:YITVPSF PhylomeDB:Q9LSA6
Genevestigator:Q9LSA6 Uniprot:Q9LSA6
Length = 415
Score = 160 (61.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
+P FKCP+SL +M PV + +G T++R IQ+W + GN+TCP T L + PN +
Sbjct: 12 VPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNLTL 71
Query: 325 KDLISKW 331
+ LI+ W
Sbjct: 72 QRLINIW 78
Score = 86 (35.3 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 38/158 (24%), Positives = 75/158 (47%)
Query: 513 LNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL---AVS--CL 567
+++ +S + E ++ L +S ++S + ++ + K+ L TL AV+ L
Sbjct: 240 ISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSL 299
Query: 568 VILKNMCNTEHAR--VCVVETSGCLPSVAE-LLEIGSEEDQEHAVAILLCLCS--QRDQY 622
+L+ + + R +C + C+ V + LL++ S EHAV IL CLC + D+
Sbjct: 300 KLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKV-STTATEHAVTILWCLCYVFREDKT 358
Query: 623 CKLVM--NEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
+ + + GV LV I + + A +L ++L+
Sbjct: 359 VEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLK 396
Score = 57 (25.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSP---NGKFQELAIKILHNLSS 536
E +L+ L+ +S SK++A+ A+ I ++L + N E ++K+L LSS
Sbjct: 252 EASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSS 307
Score = 51 (23.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 23/112 (20%), Positives = 51/112 (45%)
Query: 548 EFLPKLVPFLKDAT----LAVSCLVILKNM-CNTEHARVCVVETSG--CLPSVAELLEIG 600
EF+P LV ++ L + + IL ++ + E ++ G CL ++ ++ G
Sbjct: 142 EFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDRERLSNLMLANDGGDCLTAILLAIQRG 201
Query: 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK-ISVY-GNDKAKVSA 650
+ E + +V +L + + +GV+ ++K IS+ +D + + A
Sbjct: 202 NLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEA 253
>TAIR|locus:2141226 [details] [associations]
symbol:PUB8 "plant U-box 8" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA;NAS] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00184 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002687
GenomeReviews:CT486007_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AL161554 GO:GO:0008270 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:EF637083 EMBL:AL031187 EMBL:EF182720 HSSP:Q8VZ40
IPI:IPI00526364 PIR:T05177 RefSeq:NP_193866.1 UniGene:At.65012
ProteinModelPortal:O81902 SMR:O81902 PaxDb:O81902
EnsemblPlants:AT4G21350.1 GeneID:827885 KEGG:ath:AT4G21350
TAIR:At4g21350 eggNOG:NOG271823 HOGENOM:HOG000272744
InParanoid:O81902 OMA:LCKLPEN PhylomeDB:O81902
ProtClustDB:CLSN2685551 ArrayExpress:O81902 Genevestigator:O81902
Uniprot:O81902
Length = 374
Score = 194 (73.4 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 95/366 (25%), Positives = 159/366 (43%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV-CQSLTPNTA 323
+P F+CP+SL +M DPV+++SG TF+R+ IQ+W + GN TCP TK+ L L PN A
Sbjct: 5 LPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHA 64
Query: 324 MKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSNRTPLWTNVH 383
++ LI + + + S+ +L ++ S +SSN S +
Sbjct: 65 LRSLILNFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLESLTRLVRLTKR 124
Query: 384 DIDLSR-LTELN-----WDC--QC-KVIED------YETRLEHDNQVSHSLSSTNFVEPL 428
D + R +TE DC C +V+++ LE DN+V L + + +
Sbjct: 125 DSSIRRKVTESGAVRAALDCVDSCNQVLQEKSLSLLLNLSLEDDNKVG--LVADGVIRRI 182
Query: 429 IRFLRDARDLHDSRAQRIGCRLL--LAFVSKNRSGI-PYLNEDXXXXXXXXXXXXXXTEE 485
+ LR D +A I LL LA V N++ I Y + +E
Sbjct: 183 VTVLRVGSP--DCKA--IAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGNDRERKE 238
Query: 486 TLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545
+ L AL S+ ++V G++ ++ DS + E+ + +L + S +
Sbjct: 239 SATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEV-LGLLVKCRGGREEMSKV- 296
Query: 546 PSEFLPKLVPFLKDATL-AVS-CLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEE 603
S F+ LV L++ L + L IL +C V V+ G V E+ G E+
Sbjct: 297 -SGFVEVLVNVLRNGNLKGIQYSLFILNCLCCCSGEIVDEVKREG----VVEIC-FGFED 350
Query: 604 DQEHAV 609
++ +
Sbjct: 351 NESEKI 356
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 44/172 (25%), Positives = 85/172 (49%)
Query: 485 ETLAILVALSSYAYFIS-KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543
E+L LV L+ I K+ SGA+ + L+ +DS N QE ++ +L NLS + D +
Sbjct: 113 ESLTRLVRLTKRDSSIRRKVTESGAVRAALDCVDSCNQVLQEKSLSLLLNLSLEDDNKVG 172
Query: 544 IAPSEFLPKLVPFLKDATLAVSCLV--ILKNMCNTEHARVCVVETSGCLPSVAELLEIGS 601
+ + ++V L+ + + +L ++ E + + + ++ LL +G+
Sbjct: 173 LVADGVIRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN 232
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALEL 653
+ +++ + L LCS D K V++ G +P LV+ + G ++A V L L
Sbjct: 233 DRERKESATALYALCSFPDNR-KRVVDCGSVPILVEAADSGLERA-VEVLGL 282
>TAIR|locus:2013850 [details] [associations]
symbol:CMPG1 ""CYS, MET, PRO, and GLY protein 1""
species:3702 "Arabidopsis thaliana" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0015824 "proline transport" evidence=RCA] [GO:0035556
"intracellular signal transduction" evidence=RCA]
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC026480
GO:GO:0010200 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 UniGene:At.23473 HSSP:Q8VZ40 EMBL:AY034913
EMBL:AY063104 EMBL:AY087421 IPI:IPI00524256 PIR:D96686
RefSeq:NP_564866.1 UniGene:At.71474 ProteinModelPortal:Q9C8D1
SMR:Q9C8D1 STRING:Q9C8D1 EnsemblPlants:AT1G66160.1 GeneID:842931
KEGG:ath:AT1G66160 TAIR:At1g66160 eggNOG:NOG283749
HOGENOM:HOG000238505 InParanoid:Q9C8D1 OMA:AFSENAN PhylomeDB:Q9C8D1
ProtClustDB:CLSN2689039 Genevestigator:Q9C8D1 Uniprot:Q9C8D1
Length = 431
Score = 175 (66.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 32/68 (47%), Positives = 41/68 (60%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP F+CP+S LM DPV+I SG T++R I+KWFE G TCP T L PN +
Sbjct: 33 IPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQIPNHTI 92
Query: 325 KDLISKWC 332
+ +I WC
Sbjct: 93 RRMIQGWC 100
Score = 59 (25.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 558 KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQ-EHAVAILLCLC 616
+D+T V+ L+ + +M T V + E+L + SE E A+ +L +C
Sbjct: 264 RDST-CVNSLISIHHMILTNQETVSRFLELDLVNITVEML-VDSENSVCEKALTVLNVIC 321
Query: 617 SQRDQYCKLVMNEGVIPSLVK 637
++ K+ N+ VIP LVK
Sbjct: 322 ETKEGREKVRRNKLVIPILVK 342
>TAIR|locus:2135788 [details] [associations]
symbol:AT4G12710 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR016024 PROSITE:PS50176 SMART:SM00185 EMBL:CP002687
GenomeReviews:CT486007_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AL049640 EMBL:AL161534 HOGENOM:HOG000237435
EMBL:BT026433 EMBL:AK228965 IPI:IPI00547137 PIR:T06629
RefSeq:NP_193007.1 UniGene:At.33450 ProteinModelPortal:Q9SU15
SMR:Q9SU15 EnsemblPlants:AT4G12710.1 GeneID:826883
KEGG:ath:AT4G12710 TAIR:At4g12710 eggNOG:NOG281035
InParanoid:Q9SU15 OMA:MVHRSME PhylomeDB:Q9SU15
ProtClustDB:CLSN2685767 Genevestigator:Q9SU15 Uniprot:Q9SU15
Length = 402
Score = 185 (70.2 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 81/327 (24%), Positives = 144/327 (44%)
Query: 350 NMSLGSL--DTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTE--LNWDCQCKVIEDY 405
N + S+ D++ ++ S A+ T W ++ + L++ L+ D ++
Sbjct: 8 NQMMASIAGDSTVTANISEEDEAEEETTTNTWKTTKELLILHLSKKLLHGDLDFRIEAAK 67
Query: 406 ETR-LEHDNQVSHS----LSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS 460
E R L + V S L+ + PL+ L + D+R + L LA V R+
Sbjct: 68 EIRKLLRKSPVKSSARSKLADAGVIPPLVPMLFSSNV--DARHASLLALLNLA-VRNERN 124
Query: 461 GIPYLNEDXX--XXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASILNMLDS 518
I + E A ++ LS+ + I++SG ++ ML S
Sbjct: 125 KIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPANKAMIISSGVPPLLIQMLSS 184
Query: 519 PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD----ATLAVSCLVILKN-M 573
+ + A+ LHNLS+ + + I ++ + L+ LK+ + A +++ +
Sbjct: 185 GTVQGKVDAVTALHNLSACKEYSAPILDAKAVYPLIHLLKECKKHSKFAEKATALVEMIL 244
Query: 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC-SQRDQYCKLVMNEGVI 632
++E R + + ++ E +E GS EHAV LL LC S RD+Y KL++ EG I
Sbjct: 245 SHSEDGRNAITSCEDGILTLVETVEDGSPLSIEHAVGALLSLCRSDRDKYRKLILKEGAI 304
Query: 633 PSLVKISVYGNDKAKVSALELRRLLRD 659
P L+ +V G K++ A L LLR+
Sbjct: 305 PGLLSSTVDGTSKSRDRARVLLDLLRE 331
>TAIR|locus:2096687 [details] [associations]
symbol:AT3G01400 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000225
InterPro:IPR016024 Pfam:PF00514 PROSITE:PS50176 SMART:SM00185
EMBL:CP002686 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:AC010870 ProtClustDB:CLSN2686276 IPI:IPI00535994
RefSeq:NP_566136.1 UniGene:At.20281 ProteinModelPortal:Q9SGH8
SMR:Q9SGH8 PRIDE:Q9SGH8 EnsemblPlants:AT3G01400.1 GeneID:821320
KEGG:ath:AT3G01400 TAIR:At3g01400 InParanoid:Q9SGH8 OMA:VAELECP
PhylomeDB:Q9SGH8 Genevestigator:Q9SGH8 Uniprot:Q9SGH8
Length = 355
Score = 182 (69.1 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 63/259 (24%), Positives = 114/259 (44%)
Query: 406 ETRLEHDNQVSH--SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLL--AFVSKNRSG 461
E RL N+ + ++ ++PLI + + D + Q G +L + +N+
Sbjct: 86 EIRLLSKNKPENRIKIAKAGAIKPLISLISSS----DLQLQEYGVTAILNLSLCDENKES 141
Query: 462 IPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASILNMLDSPNG 521
I E L+ LS I SGA+ ++N+L++
Sbjct: 142 IASSGAIKPLVRALKMGTPTAKENAACALLRLSQIEENKVAIGRSGAIPLLVNLLETGGF 201
Query: 522 KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA 579
+ ++ A L++L S + + S + LV + D + + ++ + + +
Sbjct: 202 RAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELMADFGSNMVDKSAFVMSLLMSVPES 261
Query: 580 RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS 639
+ +VE G +P + E++E+G++ +E AV+ILL LC + Y +V EG IP LV +S
Sbjct: 262 KPAIVEEGG-VPVLVEIVEVGTQRQKEMAVSILLQLCEESVVYRTMVAREGAIPPLVALS 320
Query: 640 VYGNDKAKVSALELRRLLR 658
G +AK A L LLR
Sbjct: 321 QAGTSRAKQKAEALIELLR 339
>TAIR|locus:2169861 [details] [associations]
symbol:AT5G37490 species:3702 "Arabidopsis thaliana"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0010200 "response to chitin"
evidence=IEP;RCA] [GO:0002679 "respiratory burst involved in
defense response" evidence=RCA] [GO:0009693 "ethylene biosynthetic
process" evidence=RCA] [GO:0035556 "intracellular signal
transduction" evidence=RCA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002688 GenomeReviews:BA000015_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AB025630 HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT020311
EMBL:BT020439 IPI:IPI00541809 RefSeq:NP_198565.1 UniGene:At.30484
ProteinModelPortal:Q5PNY6 SMR:Q5PNY6 STRING:Q5PNY6 PRIDE:Q5PNY6
EnsemblPlants:AT5G37490.1 GeneID:833727 KEGG:ath:AT5G37490
TAIR:At5g37490 eggNOG:NOG287305 InParanoid:Q5PNY6 OMA:HAPLRHE
PhylomeDB:Q5PNY6 ProtClustDB:CLSN2916550 Genevestigator:Q5PNY6
Uniprot:Q5PNY6
Length = 435
Score = 170 (64.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 261 SRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320
S IP F+CP+S+ LM DPV+I +G T++R+ I+ W GN TCP T L P
Sbjct: 27 SEITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIP 86
Query: 321 NTAMKDLISKWCM 333
N ++ +I WC+
Sbjct: 87 NHTIRKMIQGWCV 99
Score = 57 (25.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 32/166 (19%), Positives = 71/166 (42%)
Query: 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVP 555
+++ + VA + I + + S + K +AI + + +I S + V
Sbjct: 248 HSFAVENGVAEALVKLIRDSVSSSSTKSSLIAIYQM--VLQKPEIASEFLEIGLVSITVE 305
Query: 556 FLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
+ DA +V L +L +C TEH R V + + +P + + + SE +++++L
Sbjct: 306 MIVDAENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMIL 365
Query: 614 CLCSQRDQYC-KLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLL 657
L + + + G ++ + G ++ K A EL +++
Sbjct: 366 KLWKTGNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMM 411
>TAIR|locus:2030462 [details] [associations]
symbol:SAUL1 "senescence-associated E3 ubiquitin ligase
1" species:3702 "Arabidopsis thaliana" [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0070696 "transmembrane receptor
protein serine/threonine kinase binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0010115 "regulation of abscisic
acid biosynthetic process" evidence=IMP] [GO:0010150 "leaf
senescence" evidence=IMP] [GO:0010271 "regulation of chlorophyll
catabolic process" evidence=IMP] [GO:0010380 "regulation of
chlorophyll biosynthetic process" evidence=IMP] [GO:0090359
"negative regulation of abscisic acid biosynthetic process"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 PROSITE:PS50176 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC069251 GO:GO:0010150
GO:GO:0010380 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0010271
GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40 eggNOG:NOG276937
HOGENOM:HOG000241783 ProtClustDB:CLSN2682757 EMBL:AY059775
EMBL:AY096753 IPI:IPI00539405 IPI:IPI00886504 RefSeq:NP_564125.2
UniGene:At.21947 ProteinModelPortal:Q9LM76 SMR:Q9LM76 IntAct:Q9LM76
STRING:Q9LM76 PaxDb:Q9LM76 PRIDE:Q9LM76 EnsemblPlants:AT1G20780.1
GeneID:838668 KEGG:ath:AT1G20780 TAIR:At1g20780 InParanoid:Q9LM76
OMA:VARDYNL PhylomeDB:Q9LM76 Genevestigator:Q9LM76 GO:GO:0090359
Uniprot:Q9LM76
Length = 801
Score = 165 (63.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 58/203 (28%), Positives = 101/203 (49%)
Query: 244 VDSRVGDRKFGAQTNNLSRAI--IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE 301
V S GD+ +++ R + I E F CPL+ +M+DPV +E+G+TFER I+KWF+E
Sbjct: 2 VGSSDGDQS--DDSSHFERGVDHIYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKE 59
Query: 302 ----GNH-TCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSL--G 354
G +CP T +L ++ + A+++ I +W S ND LDI+ SL G
Sbjct: 60 CRDSGRPPSCPLTSQELTSTDVSASIALRNTIEEW-----RSRNDA-AKLDIARQSLFLG 113
Query: 355 SLDTSYGSDTSS-NKIADG--SNRTPLWTN--VHDIDLSRLTELNWDCQCKVIEDYETRL 409
+ +T +I SNR + + +H I + L + + K ++ + +
Sbjct: 114 NAETDILQALMHVRQICRTIRSNRHGVRNSQLIHMI-IDMLKSTSHRVRYKALQTLQVVV 172
Query: 410 EHDNQVSHSLSSTNFVEPLIRFL 432
E D++ ++ + V L++FL
Sbjct: 173 EGDDESKAIVAEGDTVRTLVKFL 195
Score = 69 (29.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 41/171 (23%), Positives = 76/171 (44%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLD--SPNG---KFQELAIKILHNLSS-- 536
E L L +SS+ +++ G L ++ L PN + +E++ IL N+ +
Sbjct: 329 EAALKALNKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRLKEVSATILANIVNIG 388
Query: 537 -DVDIQSHIAPSEFLPKLVPFLKDATLAVSC--LVILKNM--C-NTEHARVCVVETSGCL 590
D D + ++ + + L+ + + A+ C L +L + C T V ++TSG +
Sbjct: 389 YDFDKATLVSENR-VENLLHLISNTGPAIQCKLLEVLVGLTSCPKTVPKVVYAIKTSGAI 447
Query: 591 PSVAELLEIGSEEDQEHAVAILLCLCS--QRDQYCK-LVMNEGVIPSLVKI 638
S+ + +E+ +D A LL S ++ K L G + SLV I
Sbjct: 448 ISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGTAGQLGSLVAI 498
Score = 55 (24.4 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHI 544
+V GA+ ++ +LD N K E A+ L +L D +D++ +
Sbjct: 668 LVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGV 710
Score = 49 (22.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 36/167 (21%), Positives = 74/167 (44%)
Query: 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVP---F 556
+ +VA +S+++++ S + +E A+K L+ +SS + LP L+ +
Sbjct: 304 VKVLVAQTVGSSLVDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKDLFY 363
Query: 557 LKDATLAVSC----LVILKNMCNT--EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610
+ L + IL N+ N + + +V + + ++ L+ Q +
Sbjct: 364 VGPNNLPIRLKEVSATILANIVNIGYDFDKATLVSENR-VENLLHLISNTGPAIQCKLLE 422
Query: 611 ILLCLCSQRDQYCKLVM---NEGVIPSLVK-ISVYGNDKAKVSALEL 653
+L+ L S K+V G I SLV+ I V ND ++++++L
Sbjct: 423 VLVGLTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKL 469
>TAIR|locus:2146183 [details] [associations]
symbol:AT5G18320 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC051626 HOGENOM:HOG000238412
IPI:IPI00534776 RefSeq:NP_197333.2 UniGene:At.54897
ProteinModelPortal:Q3E9F7 SMR:Q3E9F7 PaxDb:Q3E9F7 PRIDE:Q3E9F7
EnsemblPlants:AT5G18320.1 GeneID:831950 KEGG:ath:AT5G18320
TAIR:At5g18320 eggNOG:NOG312656 InParanoid:Q3E9F7 OMA:NTIMIEP
PhylomeDB:Q3E9F7 ProtClustDB:CLSN2686550 Genevestigator:Q3E9F7
Uniprot:Q3E9F7
Length = 458
Score = 173 (66.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 38/116 (32%), Positives = 65/116 (56%)
Query: 258 NNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317
+++S +P+ F C LS +M +PV+I SGQT+E+ +I +W + TCPKTK L +
Sbjct: 65 SDISPVEVPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWLKH-ERTCPKTKQVLSHRL 123
Query: 318 LTPNTAMKDLISKWCMNLCSSMNDLHVPLD--ISNMSLGSLDTSYGSDTSSNKIAD 371
PN + DLI++WC+ + D P D ++ + ++ +SS+ +AD
Sbjct: 124 WIPNHLISDLITQWCL---VNKYDHQKPSDELVAELFTSDIEALLQRVSSSSSVAD 176
Score = 52 (23.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 39/164 (23%), Positives = 72/164 (43%)
Query: 498 YFISKIVAS-GALASILNMLDSP---NGKFQELAIKILHNLSSDVDIQSHIAPSEF-LPK 552
+F++ I S L S L+ LD + + QE + L NLS ++ IA + +P
Sbjct: 197 FFVAGIHDSITRLLSPLSTLDEAVDSSLELQENIVTALFNLSILESNKTVIAENCLVIPL 256
Query: 553 LVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610
L LK T + L ++ + ++ ++ S + ++ +L+E G + A +
Sbjct: 257 LTKSLKQGTDETRRNAAATLSSLSAIDSNKI-IIGNSEAVKALIDLIEEGDLLATKEATS 315
Query: 611 ILLCLCSQRDQYCKLVMNEGVIPSLVK-ISVYGNDKAKVSALEL 653
+ LC + K+V + G+I + K I N +S L L
Sbjct: 316 TVFNLCIVLENKGKVV-SAGLIHAATKKIKAGSNVDELLSLLAL 358
>TAIR|locus:2174814 [details] [associations]
symbol:CMPG2 ""CYS, MET, PRO, and GLY protein 2""
species:3702 "Arabidopsis thaliana" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0035556 "intracellular signal transduction" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB010076
HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT023419 EMBL:BT025629
IPI:IPI00540273 RefSeq:NP_201271.1 UniGene:At.19743
UniGene:At.74061 ProteinModelPortal:Q9FLF4 SMR:Q9FLF4 STRING:Q9FLF4
PaxDb:Q9FLF4 PRIDE:Q9FLF4 EnsemblPlants:AT5G64660.1 GeneID:836587
KEGG:ath:AT5G64660 TAIR:At5g64660 eggNOG:NOG315056
InParanoid:Q9FLF4 OMA:CAGLLEF PhylomeDB:Q9FLF4
ProtClustDB:CLSN2684525 Genevestigator:Q9FLF4 Uniprot:Q9FLF4
Length = 420
Score = 151 (58.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
+P F+CP+SL +M PV + +G T++R IQ+W + GN+TCP T L + PN +
Sbjct: 10 VPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTL 69
Query: 325 KDLISKW 331
+ LI W
Sbjct: 70 QRLIEIW 76
Score = 71 (30.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 525 ELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT--LAVS----CLVILKNMCNTEH 578
E ++ L +SS ++ ++ + + + L D+T L+VS CL +L+ + +T+
Sbjct: 257 ESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDSTSSLSVSVTEKCLKLLEILASTKE 316
Query: 579 ARVCVVETSG-CLPSVAELLEIGSEEDQEHAVAIL 612
R + G CL +V + L S EHAV +L
Sbjct: 317 GRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVL 351
Score = 48 (22.0 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 35/154 (22%), Positives = 65/154 (42%)
Query: 524 QELAIKILHNLSSDVDIQSHIAP------SEFLPKLVPFLK--DATLAVSCLVILKNMCN 575
QE A+KIL + S V + + + L +V K + L + C +L+ +
Sbjct: 167 QE-AVKILSTIRSKVSDRRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLEFIAV 225
Query: 576 TEHARVCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCS-QRDQYCKL-VMNEGVI 632
+++ + E G + EL++ I + D + L CL + + KL ++ E +I
Sbjct: 226 DAESKLLIAERDGL---ITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLI 282
Query: 633 PSLVKISVYGNDKAKVSALE-LRRLLRDVAYSVE 665
+ K+ VS E +LL +A + E
Sbjct: 283 GDVTKLLSDSTSSLSVSVTEKCLKLLEILASTKE 316
>TAIR|locus:2039265 [details] [associations]
symbol:PUB23 "plant U-box 23" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0010200
"response to chitin" evidence=IEP;RCA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0002679 "respiratory burst involved in defense
response" evidence=IGI;RCA] [GO:0006952 "defense response"
evidence=IGI] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006612
"protein targeting to membrane" evidence=RCA] [GO:0006944 "cellular
membrane fusion" evidence=RCA] [GO:0009862 "systemic acquired
resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035556
"intracellular signal transduction" evidence=RCA] [GO:0042742
"defense response to bacterium" evidence=RCA] [GO:0043069 "negative
regulation of programmed cell death" evidence=RCA] [GO:0050832
"defense response to fungus" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009414 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 GO:GO:0051865
EMBL:AC007017 GO:GO:0002679 HSSP:Q8VZ40 HOGENOM:HOG000238505
eggNOG:NOG331697 ProtClustDB:CLSN2684770 EMBL:BT005829
EMBL:AK227343 IPI:IPI00548709 PIR:G84774 RefSeq:NP_181137.2
UniGene:At.43241 ProteinModelPortal:Q84TG3 SMR:Q84TG3 IntAct:Q84TG3
STRING:Q84TG3 PRIDE:Q84TG3 EnsemblPlants:AT2G35930.1 GeneID:818166
KEGG:ath:AT2G35930 TAIR:At2g35930 InParanoid:Q84TG3 OMA:RLHARAW
PhylomeDB:Q84TG3 Genevestigator:Q84TG3 Uniprot:Q84TG3
Length = 411
Score = 169 (64.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGN-HTCPKTKMKLVCQSLTPNTA 323
IP F CP+SL +M DPV++ +G T++R I+KW G ++CP TK + LTPN
Sbjct: 12 IPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLTPNHT 71
Query: 324 MKDLISKWC-MNLCSSMNDLHVP 345
++ LI WC +N + + P
Sbjct: 72 LRRLIQSWCTLNASYGVERIPTP 94
Score = 50 (22.7 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 27/137 (19%), Positives = 61/137 (44%)
Query: 509 LASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE----FLPKLVPFLKDATLA- 563
LA+I++ DS NG + A+ +L++L + + ++ ++ + L ++
Sbjct: 147 LANIVSN-DSENGSLTDEALNLLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYES 205
Query: 564 -VSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRDQ 621
V ++LKN+ + V ++L+ S++ + A+ IL+ +C
Sbjct: 206 RVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILDDRISQKATKAAMHILVNICPWGRN 265
Query: 622 YCKLVMNEGVIPSLVKI 638
K V GVI ++++
Sbjct: 266 RHKAV-EAGVISVIIEL 281
Score = 43 (20.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 567 LVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL---CSQRDQYC 623
+V+L +C R + + V + + S+ + AV +LL + C+
Sbjct: 298 MVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLH 357
Query: 624 KLVMNEGVIPSL-VKISVYGNDKAKVSALELRRL 656
++ + GV+ L + + V K K A EL +L
Sbjct: 358 EM-LQLGVVAKLCLVLQVSCGGKTKEKAKELLKL 390
Score = 40 (19.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 32/126 (25%), Positives = 57/126 (45%)
Query: 483 TEETLAILVALSSYAYFISKIVASGALASILNML-D---SPNGKFQELAIKILHNLSSDV 538
T+ + ILV + + K V +G ++ I+ +L D + + E+A+ +L D+
Sbjct: 249 TKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVL-----DL 303
Query: 539 DIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSG--CL-PSVA- 594
Q +EFL A +AV C IL+ V V+ + G C P++
Sbjct: 304 LCQCAEGRAEFLNH------GAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLH 357
Query: 595 ELLEIG 600
E+L++G
Sbjct: 358 EMLQLG 363
Score = 37 (18.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 652 ELRRLLRDVAYSVEQQ 667
E+ +L+RD A S E Q
Sbjct: 102 EIEKLIRDSASSHENQ 117
>TAIR|locus:2079964 [details] [associations]
symbol:PUB22 "plant U-box 22" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0010200
"response to chitin" evidence=IEP;RCA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0002679 "respiratory burst involved in defense
response" evidence=IGI;RCA] [GO:0006952 "defense response"
evidence=IGI] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0006865 "amino acid transport" evidence=RCA]
[GO:0015824 "proline transport" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143
GO:GO:0005829 EMBL:CP002686 GenomeReviews:BA000014_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0009414
GO:GO:0010200 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 GO:GO:0051865 EMBL:AL050300 GO:GO:0002679 HSSP:Q8VZ40
HOGENOM:HOG000238505 EMBL:BT015763 EMBL:BT020203 EMBL:AK228993
IPI:IPI00521627 PIR:T08454 RefSeq:NP_190813.1 UniGene:At.35294
ProteinModelPortal:Q9SVC6 SMR:Q9SVC6 STRING:Q9SVC6
EnsemblPlants:AT3G52450.1 GeneID:824410 KEGG:ath:AT3G52450
TAIR:At3g52450 eggNOG:NOG331697 InParanoid:Q9SVC6 OMA:RNSEMAM
PhylomeDB:Q9SVC6 ProtClustDB:CLSN2684770 Genevestigator:Q9SVC6
Uniprot:Q9SVC6
Length = 435
Score = 168 (64.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGN-HTCPKTKMKLVCQSLTPNTA 323
IP F CP+SL +M DPV++ +G T++R I+KW G ++CP TK + LTPN
Sbjct: 7 IPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDLTPNHT 66
Query: 324 MKDLISKWC-MNLCSSMNDLHVP 345
++ LI WC +N + + P
Sbjct: 67 LRRLIQSWCTLNASYGIERIPTP 89
Score = 52 (23.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 567 LVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL---CSQRDQYC 623
+V+L +C R + + V++ + S+ E AV +LL + C+
Sbjct: 322 MVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVLLSVGRFCAT-PSLL 380
Query: 624 KLVMNEGVIPSL-VKISVYGNDKAKVSALELRRL 656
+ ++ GV+ L + + V +K K A EL +L
Sbjct: 381 QEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKL 414
Score = 52 (23.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 65/274 (23%), Positives = 114/274 (41%)
Query: 344 VPLDISNMSLGSLDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIE 403
VP ++N+ S+DT Y S +SS ++ +N++D+ S + E +D +++
Sbjct: 138 VPEFLANIVSNSVDT-YNSPSSS--LSS--------SNLNDMCQSNMLENRFDSSRSLMD 186
Query: 404 DYETRLEHDNQVSHSLSS-------TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS 456
+ + L H + +L S TN V+ L + ++ R +++SRA L V+
Sbjct: 187 EALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQ--RGIYESRAYAALLLKKLLEVA 244
Query: 457 KNRSGIPYLNE--DXXXXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASILN 514
I E T + ILV + K V G ++ I+
Sbjct: 245 DPMQIILLERELFGEVIQILHDQISHKATRSAMQILVITCPWGRNRHKAVEGGTISMIIE 304
Query: 515 ML-D---SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVIL 570
+L D S + E+A+ +L D+ Q +EFL A +AV IL
Sbjct: 305 LLMDDTFSSERRNSEMAMVVL-----DMLCQCAEGRAEFLNH------GAAIAVVSKKIL 353
Query: 571 K-NMCNTEHA-RVCVVETSGCL-PSVA-ELLEIG 600
+ + +E A RV + C PS+ E+L++G
Sbjct: 354 RVSQITSERAVRVLLSVGRFCATPSLLQEMLQLG 387
>TAIR|locus:2144846 [details] [associations]
symbol:AT5G09800 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0010200 "response to chitin" evidence=IEP;RCA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002688 GenomeReviews:BA000015_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AB020752 EMBL:AL353994 HSSP:Q8VZ40 HOGENOM:HOG000238505
eggNOG:NOG315056 ProtClustDB:CLSN2684525 EMBL:BT010883
EMBL:AK175195 EMBL:AK176549 IPI:IPI00520675 PIR:T49918
RefSeq:NP_196542.1 UniGene:At.32456 ProteinModelPortal:Q9LXE3
SMR:Q9LXE3 IntAct:Q9LXE3 EnsemblPlants:AT5G09800.1 GeneID:830840
KEGG:ath:AT5G09800 TAIR:At5g09800 InParanoid:Q9LXE3 OMA:RSEICDG
PhylomeDB:Q9LXE3 Genevestigator:Q9LXE3 Uniprot:Q9LXE3
Length = 409
Score = 164 (62.8 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 256 QTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315
++++L +P FKCP+SL +M PV + +G T++R+ IQ+W ++GN+TCP T L
Sbjct: 2 RSDDLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQN 61
Query: 316 QSLTPNTAMKDLISKW 331
+ PN + LI W
Sbjct: 62 KEFVPNLTLHRLIDHW 77
Score = 54 (24.1 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 33/155 (21%), Positives = 67/155 (43%)
Query: 503 IVASGA--LASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLP----KLVPF 556
I+ +G L S ++ N K + +L ++ D + + IA E L KL+
Sbjct: 183 ILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISS 242
Query: 557 LKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE--IGSEEDQEHAVAILLC 614
D++L + L +L + +++ ++ ++ + + LL S E + +L
Sbjct: 243 DSDSSLIEANLSLLIAIASSKRVKLALIREK-LVTKLTSLLTDPTTSVSVTEKCLKLLEA 301
Query: 615 L--CSQ-RDQYCKLVMNEGVIPSLVKISVYGNDKA 646
+ C + R + C V E V+ L+K+S + A
Sbjct: 302 ISSCKEGRSEICDGVCVETVVNKLMKVSTAATEHA 336
Score = 48 (22.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 14/70 (20%), Positives = 34/70 (48%)
Query: 583 VVETSG--CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV 640
++ T+G CL S L++ G+ + + A+L + + + EG++ ++K+
Sbjct: 182 LILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLIS 241
Query: 641 YGNDKAKVSA 650
+D + + A
Sbjct: 242 SDSDSSLIEA 251
Score = 48 (22.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/119 (18%), Positives = 53/119 (44%)
Query: 562 LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHA-VAILLCLCSQRD 620
L + C +L+ + +++ + + G + + +L+ S+ A +++L+ + S +
Sbjct: 205 LKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKR 264
Query: 621 QYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-LRRLLRDVAYSVEQQ---CFGSEIDT 675
L+ E ++ L S+ + VS E +LL ++ E + C G ++T
Sbjct: 265 VKLALI-REKLVTKLT--SLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEICDGVCVET 320
>TAIR|locus:2146213 [details] [associations]
symbol:AT5G18340 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC051626 HOGENOM:HOG000238412
ProtClustDB:CLSN2686550 IPI:IPI00517179 RefSeq:NP_197335.1
UniGene:At.54899 ProteinModelPortal:Q3E9F5 SMR:Q3E9F5
EnsemblPlants:AT5G18340.1 GeneID:831952 KEGG:ath:AT5G18340
TAIR:At5g18340 eggNOG:NOG267360 InParanoid:Q3E9F5 OMA:ISPHERV
PhylomeDB:Q3E9F5 Genevestigator:Q3E9F5 Uniprot:Q3E9F5
Length = 456
Score = 173 (66.0 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 35/89 (39%), Positives = 54/89 (60%)
Query: 247 RVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNH-- 304
++ + K + ++ S +P+ FKC LS +M DPV+I SGQT+E+ +I +W NH
Sbjct: 56 KIVESKKRKRESDSSSVEVPKEFKCTLSKTIMIDPVIIFSGQTYEKRYITEWL---NHDL 112
Query: 305 TCPKTKMKLVCQSLTPNTAMKDLISKWCM 333
TCP K L LTPN + +LI++WC+
Sbjct: 113 TCPTAKQVLYRVCLTPNHLINELITRWCL 141
Score = 45 (20.9 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 26/113 (23%), Positives = 47/113 (41%)
Query: 526 LAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVE 585
L + L ++ S+ I + + L L+ L D + L + ++C E
Sbjct: 280 LTLASLSDIDSNKIIIGNSVALKALIDLIGELDDLSATHDALCAVIDLCCDERENWKKAI 339
Query: 586 TSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
+ G P A + I + + ++A L L S ++ + V N GVI L+ I
Sbjct: 340 SLGLAP--AAIKNIKARRNLFESLAAL-ALISPHERVIQEVANLGVIYDLLSI 389
Score = 40 (19.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 598 EIGSEED-QEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656
E+ S + QE+ V L + + L N VIP L K G+ + +A
Sbjct: 225 EVDSNPELQENIVTALFNMSTFEKNKTVLAENHQVIPLLAKSMKQGSVVTRRNATLTLAS 284
Query: 657 LRDV 660
L D+
Sbjct: 285 LSDI 288
>TAIR|locus:2154124 [details] [associations]
symbol:AT5G62560 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 EMBL:AB015469 GO:GO:0000151 HOGENOM:HOG000239874
ProtClustDB:CLSN2719312 EMBL:AY128369 EMBL:BT000351 EMBL:AK227203
IPI:IPI00530696 RefSeq:NP_201062.1 UniGene:At.29043
ProteinModelPortal:Q0WUF6 SMR:Q0WUF6 PaxDb:Q0WUF6 PRIDE:Q0WUF6
EnsemblPlants:AT5G62560.1 GeneID:836376 KEGG:ath:AT5G62560
TAIR:At5g62560 eggNOG:NOG313122 InParanoid:Q0WUF6 OMA:FERACIQ
PhylomeDB:Q0WUF6 Genevestigator:Q0WUF6 Uniprot:Q0WUF6
Length = 559
Score = 116 (45.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGN--HTCPKTKMKLVCQSLTPNTA 323
P F CP++ LM DPVV+ SGQTFER+ +Q G T+ L ++ PN A
Sbjct: 32 PPEFLCPITGFLMSDPVVVSSGQTFERLSVQVCRNLGYIPDLLDGTRPDL--STVIPNLA 89
Query: 324 MKDLISKWC 332
MK I WC
Sbjct: 90 MKSTIFSWC 98
Score = 107 (42.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 36/157 (22%), Positives = 74/157 (47%)
Query: 507 GALASILNMLDSPNGKF--QELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAV 564
GA+ +L+ L S + Q+ A+ + H LS ++ + + +P L+ ++
Sbjct: 358 GAVEPLLHALRSSESERARQDAALALYH-LSLIPSNRTRLVRAGAVPTLLSMVRSGDSTS 416
Query: 565 SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG---SEEDQEHAVAILLCLCSQRDQ 621
L++L N+ + +++ + V +L E+G SE +E+ VA+LL LC +
Sbjct: 417 RILLVLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLTLCQGNLR 476
Query: 622 YCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
+ L G L+++ GN++ K A ++ +R
Sbjct: 477 FRGLASEAGAEEVLMEVEENGNERVKEKASKILLAMR 513
Score = 64 (27.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 41/203 (20%), Positives = 79/203 (38%)
Query: 449 RLLLAFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGA 508
R ++F S + S P E+ E+ L +L ++ + + + +
Sbjct: 217 RNAMSFSSTDHSSSPMSPEEEEIFNKLRGTDIFDHEQGLILLRKMTRSSEDLRVSLCTDR 276
Query: 509 LASIL-NMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCL 567
+ S L ++L S Q A + NLS + + I S F+P L+ LK T
Sbjct: 277 ILSFLRSLLVSRYNLVQTNAAASVVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEH 336
Query: 568 VI--LKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKL 625
V L ++ + ++ + P + L SE ++ A L L +L
Sbjct: 337 VAGALFSLALEDENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPSNRTRL 396
Query: 626 VMNEGVIPSLVKISVYGNDKAKV 648
V G +P+L+ + G+ +++
Sbjct: 397 V-RAGAVPTLLSMVRSGDSTSRI 418
Score = 61 (26.5 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 572 NMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGV 631
N+ + +V +V SG +P + ++L+ G+ E QEH L L + + + + V
Sbjct: 302 NLSLEKQNKVKIVR-SGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDENKMVIGVLGAV 360
Query: 632 IPSLVKISVYGNDKAKV-SALELRRL 656
P L + +++A+ +AL L L
Sbjct: 361 EPLLHALRSSESERARQDAALALYHL 386
>TAIR|locus:2178818 [details] [associations]
symbol:AT5G58680 "AT5G58680" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009693 "ethylene
biosynthetic process" evidence=RCA] InterPro:IPR000225
InterPro:IPR016024 Pfam:PF00514 PROSITE:PS50176 SMART:SM00185
EMBL:CP002688 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:AY084344 EMBL:DQ447090 IPI:IPI00540553 RefSeq:NP_200676.1
UniGene:At.29268 ProteinModelPortal:Q8LGC7 SMR:Q8LGC7
EnsemblPlants:AT5G58680.1 GeneID:835982 KEGG:ath:AT5G58680
TAIR:At5g58680 HOGENOM:HOG000084464 InParanoid:Q8LGC7 OMA:LCSTNEN
PhylomeDB:Q8LGC7 ProtClustDB:CLSN2686276 Genevestigator:Q8LGC7
Uniprot:Q8LGC7
Length = 357
Score = 165 (63.1 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 65/269 (24%), Positives = 117/269 (43%)
Query: 406 ETRLEHDNQVSH--SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCR--LLLAFVSKNRSG 461
E RL N+ + L+ ++PL+ + + D + Q G L L+ +N+
Sbjct: 84 EIRLLSKNKPENRIKLAKAGAIKPLVSLISSS----DLQLQEYGVTAVLNLSLCDENKEM 139
Query: 462 IPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYAYFISKIVASGALASILNMLDSPNG 521
I E L+ LS I SGA+ ++N+L++
Sbjct: 140 IVSSGAVKPLVNALRLGTPTTKENAACALLRLSQVEENKITIGRSGAIPLLVNLLENGGF 199
Query: 522 KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA 579
+ ++ A L++L S + ++ S + LV + D + + ++ + + +
Sbjct: 200 RAKKDASTALYSLCSTNENKTRAVESGIMKPLVELMIDFESDMVDKSAFVMNLLMSAPES 259
Query: 580 RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS 639
+ VVE G +P + E++E G++ +E +V+ILL LC + Y +V EG +P LV +S
Sbjct: 260 KPAVVEEGG-VPVLVEIVEAGTQRQKEISVSILLQLCEESVVYRTMVAREGAVPPLVALS 318
Query: 640 VYGNDK-AKVSALELRRLLRDVAYSVEQQ 667
+ AKV A L LLR +QQ
Sbjct: 319 QGSASRGAKVKAEALIELLRQPRQQQQQQ 347
>TAIR|locus:2145653 [details] [associations]
symbol:AT5G14510 species:3702 "Arabidopsis thaliana"
[GO:0005871 "kinesin complex" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0019894 "kinesin binding"
evidence=IEA] [GO:0009832 "plant-type cell wall biogenesis"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010089 "xylem development" evidence=RCA] [GO:0010413
"glucuronoxylan metabolic process" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] InterPro:IPR016024
EMBL:CP002688 GenomeReviews:BA000015_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AL163817 IPI:IPI00537670
PIR:T48624 RefSeq:NP_196955.1 UniGene:At.31922
ProteinModelPortal:Q9LY78 SMR:Q9LY78 PRIDE:Q9LY78
EnsemblPlants:AT5G14510.1 GeneID:831302 KEGG:ath:AT5G14510
TAIR:At5g14510 eggNOG:NOG303012 HOGENOM:HOG000237435
InParanoid:Q9LY78 OMA:CKEHAVG PhylomeDB:Q9LY78
ProtClustDB:CLSN2687225 Genevestigator:Q9LY78 Uniprot:Q9LY78
Length = 327
Score = 161 (61.7 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 58/193 (30%), Positives = 101/193 (52%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNM--LDSPNGKFQELAIKILHNLSSDVDIQ 541
E +A L+ LSS K+ ++ + ++ + LD + + I L NLS+ I
Sbjct: 100 ELAMAFLLILSSCNKNKVKMASTRLVQLLVGLIGLDRLTIQAKVDGIATLQNLSTLHQIV 159
Query: 542 SHI----APSEFLPKLVPFL-KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAEL 596
+ AP L +++ F K + LA + +L+N+ + H+ V G + + E
Sbjct: 160 PLVIASGAPYALL-QVINFCDKSSELADKAVALLENIIS--HSPESVSSIGGAIGVLVEA 216
Query: 597 LEIGSEEDQEHAVAILLCLCSQ-RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655
+E GS + +EHAV ILL +C+ R+ +++ EGV+P L+++SV G +AK A EL
Sbjct: 217 IEEGSAQCKEHAVGILLGICNNDRETNRGMILREGVMPGLLQVSVDGTRRAKEMARELLL 276
Query: 656 LLRDVA-YSVEQQ 667
LLRD + Y ++ +
Sbjct: 277 LLRDCSGYVIKNK 289
>TAIR|locus:2173742 [details] [associations]
symbol:AT5G40140 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AB010699 HSSP:Q8VZ40
eggNOG:NOG286330 HOGENOM:HOG000239874 IPI:IPI00517649
RefSeq:NP_198830.1 UniGene:At.55272 ProteinModelPortal:Q9FL17
SMR:Q9FL17 PRIDE:Q9FL17 EnsemblPlants:AT5G40140.1 GeneID:834011
KEGG:ath:AT5G40140 TAIR:At5g40140 InParanoid:Q9FL17 OMA:VLLILCN
Genevestigator:Q9FL17 Uniprot:Q9FL17
Length = 550
Score = 114 (45.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 26/82 (31%), Positives = 38/82 (46%)
Query: 255 AQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314
+ N+ ++ IP F CP+S LM DP+++ SG ++ER + G P V
Sbjct: 48 SNNNSPTKTEIPAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPTPPPDFSTV 107
Query: 315 CQSLTPNTAMKDLISKWCMNLC 336
PN A+K I WC C
Sbjct: 108 I----PNLALKSAIHSWCERRC 125
Score = 90 (36.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 560 ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619
AT+ V+ +L N+ + +V +V SG +P + ++L+ GS E QEH+ ++ L +
Sbjct: 284 ATVQVNVTAVLVNLSLEKSNKVKIVR-SGIVPPLIDVLKCGSVEAQEHSAGVIFSLALED 342
Query: 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKV-SALELRRL 656
+ + + G+ P L I V G + + SAL L L
Sbjct: 343 ENKTAIGVLGGLEPLLHLIRV-GTELTRHDSALALYHL 379
Score = 78 (32.5 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 567 LVILKNMCNTEHARVCVVETSG--CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624
L+IL NM + +R ++++ G C+ V +E +E VA+L L K
Sbjct: 412 LLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVAVLYGLSHDGGLRFK 471
Query: 625 -LVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
L M + LVK+ G ++AK A + +LR
Sbjct: 472 GLAMAANAVEELVKVERSGRERAKQKARRVLEVLR 506
Score = 46 (21.3 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 488 AILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPS 547
A+LV LS KIV SG + ++++L + + QE + ++ +L+ + + ++ I
Sbjct: 292 AVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFSLALEDENKTAIGVL 351
Query: 548 EFLPKLVPFLKDAT 561
L L+ ++ T
Sbjct: 352 GGLEPLLHLIRVGT 365
>TAIR|locus:2198165 [details] [associations]
symbol:AT1G01660 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC009273 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 eggNOG:KOG0167
HOGENOM:HOG000115794 IPI:IPI00527810 PIR:E86147 RefSeq:NP_171672.1
UniGene:At.51449 ProteinModelPortal:P0C6E7 SMR:P0C6E7 PRIDE:P0C6E7
EnsemblPlants:AT1G01660.1 GeneID:839461 KEGG:ath:AT1G01660
TAIR:At1g01660 InParanoid:P0C6E7 PhylomeDB:P0C6E7
ProtClustDB:CLSN2912787 Genevestigator:P0C6E7 Uniprot:P0C6E7
Length = 568
Score = 145 (56.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 222 EQKDNACAQEEGSYTVCSQSF----EVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRL 277
E+ A+++ + +VCS+ R G + ++++R P F CP+S +
Sbjct: 451 EELSKVAAEKDAASSVCSEILLLLQSYTRRHGTPSGFSDEDSVTRQP-PSYFICPISQEV 509
Query: 278 MYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331
M +P V G T+E +++W + G+ T P T +KL +L PN A++ I +W
Sbjct: 510 MREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHNNLVPNHALRSAIQEW 563
>TAIR|locus:2198190 [details] [associations]
symbol:PUB54 "plant U-box 54" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR006016
Pfam:PF00582 Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006950
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC009273 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 HSSP:Q8VZ40
IPI:IPI00532514 PIR:F86147 RefSeq:NP_171674.2 UniGene:At.42636
ProteinModelPortal:Q9LQ92 SMR:Q9LQ92 EnsemblPlants:AT1G01680.1
GeneID:839251 KEGG:ath:AT1G01680 TAIR:At1g01680 eggNOG:NOG331289
HOGENOM:HOG000115795 InParanoid:Q9LQ92 OMA:RDICINK PhylomeDB:Q9LQ92
ProtClustDB:CLSN2917980 Genevestigator:Q9LQ92 Uniprot:Q9LQ92
Length = 308
Score = 138 (53.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKD 326
E FKCP+S+ +M DP V G T+E +KW G T PKT L +L PN ++
Sbjct: 235 EDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRI 294
Query: 327 LISKW 331
+I W
Sbjct: 295 IIKDW 299
>UNIPROTKB|E2QX39 [details] [associations]
symbol:WDSUB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564
PROSITE:PS50082 PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320
SMART:SM00454 SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 InterPro:IPR020472
PRINTS:PR00320 Gene3D:3.30.40.10 InterPro:IPR013083
Gene3D:1.10.150.50 InterPro:IPR013761 InterPro:IPR021129
Pfam:PF00536 SUPFAM:SSF47769 GO:GO:0004842
GeneTree:ENSGT00700000104017 GO:GO:0000151 CTD:151525 OMA:HCCCFSP
EMBL:AAEX03017692 RefSeq:XP_535926.3 Ensembl:ENSCAFT00000039730
GeneID:478761 KEGG:cfa:478761 NextBio:20854042 Uniprot:E2QX39
Length = 476
Score = 140 (54.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP+ F CP++ LM DPV+ G ++E+ ++ W + T P T + L LTPN +
Sbjct: 404 IPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLILPSMVLTPNRTL 463
Query: 325 KDLISKW 331
K IS+W
Sbjct: 464 KMAISRW 470
>TAIR|locus:2098816 [details] [associations]
symbol:AT3G61390 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL132962 EMBL:AL137898 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151
HSSP:Q8VZ40 EMBL:AK117154 EMBL:BT005367 IPI:IPI00525308 PIR:T47931
RefSeq:NP_191698.2 UniGene:At.34291 ProteinModelPortal:Q8GZ84
SMR:Q8GZ84 EnsemblPlants:AT3G61390.2 GeneID:825311
KEGG:ath:AT3G61390 TAIR:At3g61390 eggNOG:NOG327619
HOGENOM:HOG000115794 InParanoid:Q8GZ84 OMA:QITESYT PhylomeDB:Q8GZ84
ProtClustDB:CLSN2680474 Genevestigator:Q8GZ84 Uniprot:Q8GZ84
Length = 435
Score = 139 (54.0 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 33/90 (36%), Positives = 46/90 (51%)
Query: 243 EVDSRVGDRKFG-AQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE 301
EV G R+ A T+N P+ F CP++ +M DP V G T+E I +WFE
Sbjct: 332 EVSKLKGKREEEEASTSNHREP--PQYFICPITHDIMEDPHVAADGFTYEGEAISRWFER 389
Query: 302 GNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331
G+ T P +L SL PN A++ I +W
Sbjct: 390 GHETSPMINKRLPHTSLVPNLALRSAIQEW 419
>TAIR|locus:2050659 [details] [associations]
symbol:AT2G45920 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002685 GenomeReviews:CT485783_GR
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 EMBL:AC004665
HSSP:Q8VZ40 HOGENOM:HOG000115794 ProtClustDB:CLSN2680474
EMBL:AK175182 EMBL:BT015764 EMBL:BT020181 IPI:IPI00546399
PIR:T02455 RefSeq:NP_182116.2 UniGene:At.22480
ProteinModelPortal:Q683D5 SMR:Q683D5 IntAct:Q683D5
EnsemblPlants:AT2G45920.1 GeneID:819200 KEGG:ath:AT2G45920
TAIR:At2g45920 eggNOG:NOG265582 InParanoid:Q683D5 OMA:ENRITES
PhylomeDB:Q683D5 Genevestigator:Q683D5 Uniprot:Q683D5
Length = 400
Score = 137 (53.3 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMK 325
P+ F CP+SL +M DP + G T+E I W + G+ T P T KL L PN A++
Sbjct: 326 PQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPMTNTKLHHTKLVPNLALR 385
Query: 326 DLISKW 331
I +W
Sbjct: 386 SAIQEW 391
>MGI|MGI:1919387 [details] [associations]
symbol:Wdsub1 "WD repeat, SAM and U-box domain containing 1"
species:10090 "Mus musculus" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR017986 InterPro:IPR001660
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR011510
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 Pfam:PF07647
PROSITE:PS50082 PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320
SMART:SM00454 SMART:SM00504 MGI:MGI:1919387 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ CTD:151525 OMA:HCCCFSP EMBL:AK011391
EMBL:AL929242 EMBL:BC050792 EMBL:BC061948 IPI:IPI00132574
RefSeq:NP_001153108.1 RefSeq:NP_082394.1 UniGene:Mm.288734
UniGene:Mm.488684 ProteinModelPortal:Q9D0I6 SMR:Q9D0I6
PhosphoSite:Q9D0I6 PRIDE:Q9D0I6 Ensembl:ENSMUST00000028368
GeneID:72137 KEGG:mmu:72137 UCSC:uc008jto.2 InParanoid:Q9D0I6
NextBio:335536 Bgee:Q9D0I6 CleanEx:MM_WDSUB1 Genevestigator:Q9D0I6
Uniprot:Q9D0I6
Length = 474
Score = 143 (55.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 255 AQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314
A+ ++LS I P+ F CP++ LM DPV+ G ++ER ++ W + T P T + L
Sbjct: 393 AKMDSLSSGI-PDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALP 451
Query: 315 CQSLTPNTAMKDLISKW 331
LTPN +K I++W
Sbjct: 452 SLVLTPNRTLKMAINRW 468
Score = 40 (19.1 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 60 NNAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVP 111
NN GK LL ES L I + S+ +RS + + + S +P
Sbjct: 354 NNIDGK--ELLHLTKESLAGDLKIESLGLRSKVLRSIEELRAKMDSLSSGIP 403
>RGD|1359296 [details] [associations]
symbol:Wdsub1 "WD repeat, sterile alpha motif and U-box domain
containing 1" species:10116 "Rattus norvegicus" [GO:0000151
"ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 RGD:1359296 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ CTD:151525 OMA:HCCCFSP EMBL:BC089856
IPI:IPI00391796 RefSeq:NP_001014201.1 UniGene:Rn.101918
ProteinModelPortal:Q5FVN8 PRIDE:Q5FVN8 Ensembl:ENSRNOT00000008168
GeneID:362137 KEGG:rno:362137 UCSC:RGD:1359296 InParanoid:Q5FVN8
NextBio:678784 ArrayExpress:Q5FVN8 Genevestigator:Q5FVN8
Uniprot:Q5FVN8
Length = 476
Score = 139 (54.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP+ F CP++ LM DPV+ G ++ER ++ W + T P T + L LTPN +
Sbjct: 404 IPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTL 463
Query: 325 KDLISKW 331
K I++W
Sbjct: 464 KMAINRW 470
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 117 EISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQL 167
+ + D L+ FI D S+E+ K LR ED+ +D + I +L
Sbjct: 317 QAGSVSDQLKH--FIEDWSEEDVSKWLRAQGLEDL--VDIFRTNNIDGKEL 363
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/107 (23%), Positives = 44/107 (41%)
Query: 9 VEIWSSPTSFKVHHGMCT-QLSKFVERIAKVFPEIEAARPRCSSGVQALCLL---NNAIG 64
V IW G + QL F+E + E + ++ + G++ L + NN G
Sbjct: 305 VNIWQFDLETPCQAGSVSDQLKHFIED----WSEEDVSKWLRAQGLEDLVDIFRTNNIDG 360
Query: 65 KAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVP 111
K LL ES + I + S+ +RS + + + + S +P
Sbjct: 361 K--ELLHLTKESLAGDMKIESLGLRSKVLRSIDELRTRMESLSSGIP 405
>UNIPROTKB|Q8N9V3 [details] [associations]
symbol:WDSUB1 "WD repeat, SAM and U-box domain-containing
protein 1" species:9606 "Homo sapiens" [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] InterPro:IPR017986 InterPro:IPR001660
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR011510
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 Pfam:PF07647
PROSITE:PS50082 PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320
SMART:SM00454 SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40
EMBL:AC009307 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ EMBL:AK093494 EMBL:AC008277 EMBL:BC029520
IPI:IPI00167822 IPI:IPI00477952 RefSeq:NP_001121684.1
RefSeq:NP_689741.2 UniGene:Hs.20848 ProteinModelPortal:Q8N9V3
SMR:Q8N9V3 PhosphoSite:Q8N9V3 DMDM:229463016 PaxDb:Q8N9V3
PRIDE:Q8N9V3 Ensembl:ENST00000358147 Ensembl:ENST00000359774
Ensembl:ENST00000392796 Ensembl:ENST00000409990 GeneID:151525
KEGG:hsa:151525 UCSC:uc010foo.3 CTD:151525 GeneCards:GC02M160092
HGNC:HGNC:26697 HPA:HPA036840 neXtProt:NX_Q8N9V3
PharmGKB:PA128394761 InParanoid:Q8N9V3 OMA:HCCCFSP PhylomeDB:Q8N9V3
GenomeRNAi:151525 NextBio:86717 ArrayExpress:Q8N9V3 Bgee:Q8N9V3
CleanEx:HS_WDSUB1 Genevestigator:Q8N9V3 Uniprot:Q8N9V3
Length = 476
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP+ F CP++ LM DPV+ G ++E+ ++ W + T P T + L LTPN +
Sbjct: 404 IPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTL 463
Query: 325 KDLISKW 331
K I++W
Sbjct: 464 KMAINRW 470
>UNIPROTKB|Q5ZMC3 [details] [associations]
symbol:WDSUB1 "WD repeat, SAM and U-box domain-containing
protein 1" species:9031 "Gallus gallus" [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] InterPro:IPR017986 InterPro:IPR001660
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082 PROSITE:PS50105
PROSITE:PS50294 SMART:SM00320 SMART:SM00454 SMART:SM00504
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
Gene3D:3.30.40.10 InterPro:IPR013083 Gene3D:1.10.150.50
InterPro:IPR013761 InterPro:IPR021129 Pfam:PF00536 SUPFAM:SSF47769
GO:GO:0004842 GeneTree:ENSGT00700000104017 GO:GO:0000151
HSSP:P16649 EMBL:AJ719461 IPI:IPI00588518 UniGene:Gga.5996
ProteinModelPortal:Q5ZMC3 Ensembl:ENSGALT00000020533
HOGENOM:HOG000231980 HOVERGEN:HBG080511 InParanoid:Q5ZMC3
OrthoDB:EOG4NCMCJ Uniprot:Q5ZMC3
Length = 476
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
+P+ F CP++ LM DPV+ G ++E+ ++ W + P T + L LTPN +
Sbjct: 404 VPDEFLCPITRELMKDPVIAADGYSYEKEAMENWISNNRRSSPMTNLPLPSLVLTPNRTL 463
Query: 325 KDLISKW 331
K IS+W
Sbjct: 464 KMAISRW 470
>ZFIN|ZDB-GENE-061110-97 [details] [associations]
symbol:zgc:154085 "zgc:154085" species:7955 "Danio
rerio" [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 ZFIN:ZDB-GENE-061110-97 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 EMBL:CABZ01026183 EMBL:CABZ01026184 EMBL:CABZ01048063
EMBL:CABZ01048064 EMBL:FP236277 IPI:IPI00993801
Ensembl:ENSDART00000128024 ArrayExpress:E7F9P4 Bgee:E7F9P4
Uniprot:E7F9P4
Length = 487
Score = 137 (53.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMK 325
P+ F CP++ +M DPV+ G ++ER I+ W N T P T + L LTPN +K
Sbjct: 418 PDEFLCPITREIMKDPVIAADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLLTPNRTLK 477
Query: 326 DLISKW 331
I +W
Sbjct: 478 MAIFRW 483
Score = 42 (19.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 234 SYTVCSQSFEVDSRVGD-RKFGAQTNNL 260
S+T C Q F S GD R + N+L
Sbjct: 146 SFTPCGQMFITGSTYGDLRLWDLNMNHL 173
>TAIR|locus:2171810 [details] [associations]
symbol:PUB38 "plant U-box 38" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0019894 "kinesin binding" evidence=IEA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AB013395 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40
EMBL:BT015352 EMBL:BT015720 IPI:IPI00548483 RefSeq:NP_201323.1
UniGene:At.49809 ProteinModelPortal:Q9FJP6 SMR:Q9FJP6 STRING:Q9FJP6
PRIDE:Q9FJP6 EnsemblPlants:AT5G65200.1 GeneID:836643
KEGG:ath:AT5G65200 TAIR:At5g65200 eggNOG:NOG286330
HOGENOM:HOG000239874 InParanoid:Q9FJP6 OMA:RTRHDSA PhylomeDB:Q9FJP6
ProtClustDB:CLSN2719312 Genevestigator:Q9FJP6 Uniprot:Q9FJP6
Length = 556
Score = 109 (43.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 29/71 (40%), Positives = 38/71 (53%)
Query: 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKT---KMKLV-CQSLTPN 321
P F CP+S +M DPVV+ SGQTFER+ +Q + N PK + L ++ PN
Sbjct: 34 PVEFLCPISKSVMSDPVVVSSGQTFERVCVQVC-RDLNFI-PKLNDDEESLPDFSNIIPN 91
Query: 322 TAMKDLISKWC 332
MK I WC
Sbjct: 92 LNMKSTIDTWC 102
Score = 73 (30.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 34/152 (22%), Positives = 69/152 (45%)
Query: 512 ILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLA------VS 565
I N L S QE + ++ ++ D ++ ++ P+++ LK+ ++ +
Sbjct: 229 IYNKLKSSEIFDQEQGLIMMRKMTRTND-EARVSLCS--PRILSLLKNMIVSRYSLVQTN 285
Query: 566 CLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKL 625
L L N+ + ++ +V G +P + ++L+ GS E QEHA + L + D +
Sbjct: 286 ALASLVNLSLDKKNKLTIVRL-GFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNKMPI 344
Query: 626 VMNEGVIPSLVKISVYGNDKAKV-SALELRRL 656
+ + P L + +D+ + SAL L L
Sbjct: 345 GVLGALQPLLHALRAAESDRTRHDSALALYHL 376
Score = 73 (30.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 38/187 (20%), Positives = 82/187 (43%)
Query: 507 GALASILNMLDSPNG-KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVS 565
GAL +L+ L + + + + L++L+ + +S + +P L ++ A
Sbjct: 348 GALQPLLHALRAAESDRTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGESASR 407
Query: 566 CLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEED---------QEHAVAILLCLC 616
L+++ N+ R +++ + V +L E +EE +E+ VA L L
Sbjct: 408 ALLVICNLACCSEGRSAMLDANAVAILVGKLREEWTEEPTEARSSSSARENCVAALFALS 467
Query: 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD-VAYSVEQQCFGSEIDT 675
+ ++ L + L ++ G ++A+ A ++ +L+R+ V E+ GS ID
Sbjct: 468 HESLRFKGLAKEARAVEVLKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGS-IDW 526
Query: 676 SKDASSD 682
+ S+
Sbjct: 527 DRVIDSN 533
>UNIPROTKB|F1MRF3 [details] [associations]
symbol:WDSUB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
Gene3D:3.30.40.10 InterPro:IPR013083 Gene3D:1.10.150.50
InterPro:IPR013761 SUPFAM:SSF47769 GO:GO:0004842
GeneTree:ENSGT00700000104017 GO:GO:0000151 CTD:151525
EMBL:DAAA02004471 IPI:IPI00702869 RefSeq:XP_002685394.1
UniGene:Bt.105170 ProteinModelPortal:F1MRF3
Ensembl:ENSBTAT00000005476 GeneID:783784 KEGG:bta:783784
NextBio:20926301 Uniprot:F1MRF3
Length = 476
Score = 132 (51.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP+ F CP++ LM DP++ G ++E+ ++ W T P T + L LTPN +
Sbjct: 403 IPDEFICPITRELMKDPIIASDGYSYEKEAMENWISRKKRTSPMTNLVLSSVILTPNRTL 462
Query: 325 KDLISKW 331
K I +W
Sbjct: 463 KMAIDRW 469
>TAIR|locus:2100372 [details] [associations]
symbol:PUB39 "PLANT U-BOX 39" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005871 "kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AL049746 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40
HOGENOM:HOG000239874 ProtClustDB:CLSN2719312 EMBL:AY091018
EMBL:BT020355 IPI:IPI00534988 PIR:T07721 RefSeq:NP_190366.1
UniGene:At.35768 ProteinModelPortal:Q9STT1 SMR:Q9STT1 PaxDb:Q9STT1
PRIDE:Q9STT1 EnsemblPlants:AT3G47820.1 GeneID:823936
KEGG:ath:AT3G47820 TAIR:At3g47820 eggNOG:NOG271898
InParanoid:Q9STT1 OMA:ARENCVG PhylomeDB:Q9STT1
Genevestigator:Q9STT1 Uniprot:Q9STT1
Length = 509
Score = 113 (44.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 49/172 (28%), Positives = 76/172 (44%)
Query: 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPK----TKMKLVCQSLTPN 321
P F CP++ LM DPVV+ SGQTFER+ +Q PK T+ L ++ PN
Sbjct: 11 PTEFLCPITGFLMSDPVVVASGQTFERISVQVC--RNLSFAPKLHDGTQPDL--STVIPN 66
Query: 322 TAMKDLISKWC-MNLCSSMN--DLHVPLDISNMSLGSLDTSYGSDTSSNKI----ADGSN 374
AMK I WC N D + + SL G + ++I A+ SN
Sbjct: 67 LAMKSTILSWCDRNKMEHPRPPDYAYVEGVVRTRMDSLPPGSGHRIAKSEILPPVAENSN 126
Query: 375 RTPLWTNVHDIDLSRL-TELNWDCQCKVIEDYETR-LEHDNQVSHSLSSTNF 424
+ +V SR T L+ + ++TR + H ++ S S++++
Sbjct: 127 SNSDYDSVMGAIRSRSRTSLSSTTSLPL---HQTRPINHSTRIQSSFSTSDY 175
Score = 66 (28.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 587 SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKA 646
SG +P + ++L+ GS E QEH + L L + + + + V P L + +++A
Sbjct: 265 SGFVPLLIDVLKSGSTEAQEHVIGALFSLAVEEENKMVIGVLGAVEPLLHALRSSESERA 324
Query: 647 KV-SALELRRL 656
+ +AL L L
Sbjct: 325 RQDAALALYHL 335
Score = 63 (27.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 42/218 (19%), Positives = 86/218 (39%)
Query: 438 LHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXXXXXXTEETLAILVALSSYA 497
LH +R R+ +F + + S P ++ + E I + ++ +
Sbjct: 154 LHQTRPINHSTRIQSSFSTSDYSSFPPMSPEEEEIYNKLTSVDTIDHEQGLIQLRKTTRS 213
Query: 498 YFISKI-VASGALASIL-NMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVP 555
++I + + + S+L +++ S Q A + NLS + + I S F+P L+
Sbjct: 214 NETTRISLCTDRILSLLRSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLID 273
Query: 556 FLKDATLAVSCLVI--LKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
LK + VI L ++ E ++ + P + L SE ++ A L
Sbjct: 274 VLKSGSTEAQEHVIGALFSLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALY 333
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
L + +LV G +P ++ + G +++ L
Sbjct: 334 HLSLIPNNRSRLV-KAGAVPMMLSMIRSGESASRILLL 370
Score = 52 (23.4 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 28/119 (23%), Positives = 56/119 (47%)
Query: 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT 561
KIV SG + ++++L S + + QE I L +L+ + + + I + L+ L+ +
Sbjct: 261 KIVRSGFVPLLIDVLKSGSTEAQEHVIGALFSLAVEEENKMVIGVLGAVEPLLHALRSSE 320
Query: 562 ---LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617
+ L ++ + R +V+ +G +P + ++ G E A ILL LC+
Sbjct: 321 SERARQDAALALYHLSLIPNNRSRLVK-AGAVPMMLSMIRSG-----ESASRILLLLCN 373
>UNIPROTKB|G3MZA8 [details] [associations]
symbol:WDSUB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
Gene3D:3.30.40.10 InterPro:IPR013083 Gene3D:1.10.150.50
InterPro:IPR013761 SUPFAM:SSF47769 GO:GO:0004842
GeneTree:ENSGT00700000104017 GO:GO:0000151 OMA:HCCCFSP
EMBL:DAAA02004471 ProteinModelPortal:G3MZA8
Ensembl:ENSBTAT00000064632 Uniprot:G3MZA8
Length = 477
Score = 132 (51.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP+ F CP++ LM DP++ G ++E+ ++ W T P T + L LTPN +
Sbjct: 404 IPDEFICPITRELMKDPIIASDGYSYEKEAMENWISRKKRTSPMTNLVLSSVILTPNRTL 463
Query: 325 KDLISKW 331
K I +W
Sbjct: 464 KMAIDRW 470
>TAIR|locus:2201205 [details] [associations]
symbol:AT1G23180 "AT1G23180" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] InterPro:IPR000225 InterPro:IPR016024 Pfam:PF00514
PROSITE:PS50176 SMART:SM00185 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009570 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR019308
PANTHER:PTHR13448 EMBL:BT002042 EMBL:BT008799 EMBL:AK226976
IPI:IPI00522633 RefSeq:NP_173731.2 UniGene:At.43289
UniGene:At.50936 ProteinModelPortal:Q8H0U3 SMR:Q8H0U3 PRIDE:Q8H0U3
ProMEX:Q8H0U3 EnsemblPlants:AT1G23180.1 GeneID:838926
KEGG:ath:AT1G23180 TAIR:At1g23180 HOGENOM:HOG000029826
InParanoid:Q8H0U3 OMA:LGGKKCI PhylomeDB:Q8H0U3 ArrayExpress:Q8H0U3
Genevestigator:Q8H0U3 Uniprot:Q8H0U3
Length = 834
Score = 132 (51.5 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 50/175 (28%), Positives = 86/175 (49%)
Query: 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPN--GKFQELAIKILHNLSSDVDIQ 541
E ++ +++S + + SGAL I +L P+ +E I L NL+ D +I+
Sbjct: 165 EAAAGLIRSIASVNLYRESVAESGALEEITALLSRPSLATVVKEQCICALWNLTVDEEIR 224
Query: 542 SHIAPSEFLPKLVPFLKDATLAVSCLV--ILKNMCNTEHARVCVVETSGCLPSVAELLEI 599
+A + L L+ FL+D + V +L N+ + +VE G +P +A+LL+
Sbjct: 225 EKVADFDILRLLISFLEDDDVNVKEAAGGVLANLALSRSTHKILVEV-GVIPKLAKLLKA 283
Query: 600 ------GSEEDQEHAVAILLCLCSQRDQYCK-LVMNEGVIPSLVKISVYGNDKAK 647
GS+ ++ A +LL L +D+Y + LV+ EGV+P I + G D K
Sbjct: 284 DNTENKGSKVIRKEARNVLLELA--KDEYYRILVIEEGVVP----IPIIGADAYK 332
>TAIR|locus:2130699 [details] [associations]
symbol:AT4G16490 "AT4G16490" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0006816
"calcium ion transport" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0009651 "response to salt stress"
evidence=RCA] InterPro:IPR000225 InterPro:IPR016024 Pfam:PF00514
PROSITE:PS50176 SMART:SM00185 EMBL:CP002687 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 IPI:IPI00531461
RefSeq:NP_567501.4 UniGene:At.23147 UniGene:At.75353
ProteinModelPortal:F4JMH0 SMR:F4JMH0 EnsemblPlants:AT4G16490.1
GeneID:827347 KEGG:ath:AT4G16490 OMA:DLQPTVK Uniprot:F4JMH0
Length = 472
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 43/161 (26%), Positives = 84/161 (52%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL-KDAT 561
I A GA+ ++++L + + + ++ A+ L+ L + + + + LV + ++ T
Sbjct: 303 IGACGAIPPLVSLLLNGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPLVDLVAEEGT 362
Query: 562 -LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620
+A +V+L ++ + + +VE G + ++ E +E GS + +E A+ LL LCS
Sbjct: 363 GMAEKAMVVLSSLAAIDDGKEAIVEEGG-IAALVEAIEDGSVKGKEFAILTLLQLCSDSV 421
Query: 621 QYCKLVMNEGVIPSLVKISVYGND--KAKVSALELRRLLRD 659
+ L++ EG IP LV +S G+ +AK A L LR+
Sbjct: 422 RNRGLLVREGAIPPLVGLSQSGSVSVRAKRKAERLLGYLRE 462
>TAIR|locus:2205866 [details] [associations]
symbol:AT1G44120 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0030048 "actin filament-based
movement" evidence=RCA] InterPro:IPR000225 InterPro:IPR000008
InterPro:IPR008973 InterPro:IPR016024 Pfam:PF00168 SMART:SM00185
SMART:SM00239 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC074228
SUPFAM:SSF49562 IPI:IPI00525139 PIR:E96505 RefSeq:NP_175078.1
UniGene:At.38851 ProteinModelPortal:Q9C6Y4 SMR:Q9C6Y4 PaxDb:Q9C6Y4
PRIDE:Q9C6Y4 EnsemblPlants:AT1G44120.1 GeneID:841015
KEGG:ath:AT1G44120 TAIR:At1g44120 eggNOG:NOG319897
HOGENOM:HOG000029638 InParanoid:Q9C6Y4 OMA:RNASHAL PhylomeDB:Q9C6Y4
ProtClustDB:PLN03200 Genevestigator:Q9C6Y4 Uniprot:Q9C6Y4
Length = 2114
Score = 131 (51.2 bits), Expect = 0.00028, P = 0.00028
Identities = 44/151 (29%), Positives = 75/151 (49%)
Query: 524 QELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL-----KDATLAVSCLVILKNMCNTEH 578
+E I L NL D+ I E + L+P+L + L+V L IL + N E
Sbjct: 423 RERMITCLSNLCKHGDVWDAIGKREGIQILIPYLGLSSEQHQELSVEFLAILTD--NVEE 480
Query: 579 ARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637
+R V G +P + ++LE G S++ ++ AV ++L LC ++ V G IP+L+
Sbjct: 481 SRWAVTSAGG-IPPLLQILETGVSQKAKDDAVRVILNLCCHSEEIRLCVEKAGAIPALLG 539
Query: 638 ISVYGNDKAKVSALE-LRRLLRDVAYSVEQQ 667
+ G K++ S+ L +L++ SV +Q
Sbjct: 540 LLKNGGPKSQESSANTLLKLIKTADPSVIEQ 570
>TAIR|locus:2198180 [details] [associations]
symbol:AT1G01670 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC009273 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 HSSP:Q8VZ40
eggNOG:KOG0167 PIR:E86147 EMBL:AK118101 IPI:IPI00528098
RefSeq:NP_171673.2 UniGene:At.42637 ProteinModelPortal:Q8GXQ7
SMR:Q8GXQ7 EnsemblPlants:AT1G01670.1 GeneID:839365
KEGG:ath:AT1G01670 TAIR:At1g01670 InParanoid:Q8GXQ7 OMA:NDNEMEL
PhylomeDB:Q8GXQ7 Genevestigator:Q8GXQ7 Uniprot:Q8GXQ7
Length = 365
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMK 325
P+ F CP+S +M +P V G T+E ++W G P T ++L ++L PN ++
Sbjct: 295 PQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLVLR 354
Query: 326 DLISKW 331
I W
Sbjct: 355 SAIKDW 360
>UNIPROTKB|Q0DR28 [details] [associations]
symbol:PUB57 "U-box domain-containing protein 57"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000719
InterPro:IPR003613 InterPro:IPR008266 InterPro:IPR011009
Pfam:PF00069 Pfam:PF04564 PROSITE:PS00109 PROSITE:PS50011
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005524 eggNOG:COG0515
SUPFAM:SSF56112 EMBL:DP000009 EMBL:AP008209 GO:GO:0004713
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AC114983 EMBL:AK069682 RefSeq:NP_001050396.1 UniGene:Os.52876
EnsemblPlants:LOC_Os03g31070.1 GeneID:4333147
KEGG:dosa:Os03t0424200-01 KEGG:osa:4333147 Gramene:Q0DR28
OMA:IDINATF Uniprot:Q0DR28
Length = 518
Score = 120 (47.3 bits), Expect = 0.00079, P = 0.00078
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
+P F CP+S+ +M DP V G T+E I+ WF+ G P T + L +L PN +
Sbjct: 435 VPAAFICPISMEIMKDPQVASDGFTYEAEAIRCWFDRGISRSPMTNLALPNLNLVPNRVL 494
Query: 325 KDLI 328
+ I
Sbjct: 495 RSFI 498
>ASPGD|ASPL0000001660 [details] [associations]
symbol:AN5906 species:162425 "Emericella nidulans"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0000151
"ubiquitin ligase complex" evidence=IEA] InterPro:IPR003613
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF04564 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00504
EMBL:BN001301 Gene3D:1.25.40.10 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HOGENOM:HOG000163725
OMA:QENELHS EnsemblFungi:CADANIAT00007127 Uniprot:C8UZU5
Length = 293
Score = 116 (45.9 bits), Expect = 0.00080, P = 0.00080
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 255 AQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314
A + I+P+ P++ +M+DPV++ SG +F+R+ I K+ E+ P T+ +
Sbjct: 208 ASKGEIQERIVPDYLVDPITFEIMHDPVIVPSGTSFDRIGILKYVEQSG-VDPITRTPMT 266
Query: 315 CQSLTPNTAMK----DLISK--WCMN 334
L PN A+K D ++K W ++
Sbjct: 267 VNDLRPNYALKAACEDFLTKNGWAVD 292
>ASPGD|ASPL0000008980 [details] [associations]
symbol:AN12408 species:162425 "Emericella nidulans"
[GO:0000329 "fungal-type vacuole membrane" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0000011 "vacuole inheritance"
evidence=IEA] InterPro:IPR000225 InterPro:IPR016024
InterPro:IPR026958 Pfam:PF00514 PROSITE:PS50176 SMART:SM00185
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000329
EMBL:BN001301 GO:GO:0000011 GO:GO:0016236 GO:GO:0042144
PANTHER:PTHR23315:SF8 HOGENOM:HOG000177331 OMA:EEIQCHA
GO:GO:0071255 GO:GO:0071563 GO:GO:0071561 GO:GO:0071562
ProteinModelPortal:C8V2Y6 EnsemblFungi:CADANIAT00007711
Uniprot:C8V2Y6
Length = 579
Score = 127 (49.8 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 46/167 (27%), Positives = 77/167 (46%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL 562
IVA G LA ++ + SPN + Q A+ + NL++ D ++ IA S L L+ K +
Sbjct: 143 IVALGGLAPLIKQMMSPNVEVQCNAVGCITNLATHEDNKAKIARSGALGPLIRLAKSKDM 202
Query: 563 AV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620
V + L NM +++ R +V +G +P + +LL + Q + L +
Sbjct: 203 RVQRNATGALLNMTHSDDNRQQLVN-AGAIPVLVQLLSSSDVDVQYYCTTALSNIAVDAS 261
Query: 621 QYCKLVMNEG-VIPSLVKISVYGNDKAKV-SALELRRLLRDVAYSVE 665
+L E ++ SLV + K + +AL LR L D Y +E
Sbjct: 262 NRKRLAQTESRLVQSLVHLMDSSTPKVQCQAALALRNLASDEKYQLE 308
Score = 39 (18.8 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 119 SQIIDDLREATFIL-DSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSP 177
S +D R A+ + ++ + +V R+ L+ + + S + +A A L + +
Sbjct: 79 SDNVDLQRSASLTFAEITERDVREVDRDTLEPILFLLQSSDIEVQRAASAALGNLAVNAD 138
Query: 178 KAILI 182
+LI
Sbjct: 139 NKVLI 143
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 710 683 0.00079 121 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 623 (66 KB)
Total size of DFA: 358 KB (2179 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.03u 0.13s 58.16t Elapsed: 00:00:03
Total cpu time: 58.05u 0.13s 58.18t Elapsed: 00:00:03
Start: Sat May 11 04:30:56 2013 End: Sat May 11 04:30:59 2013