BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036199
         (710 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
           An Armadillo Repeat Containing Protein From Arabidopsis
           Thaliana
          Length = 78

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 49/68 (72%)

Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
            PE F+CP+SL LM DPV++ +GQT+ER  IQKW + G+ TCPK++  L+   LTPN  +
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 325 KDLISKWC 332
           K LI+ WC
Sbjct: 65  KSLIALWC 72


>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
 pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
 pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
 pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
          Length = 252

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 79/149 (53%), Gaps = 3/149 (2%)

Query: 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLPKLVPFLK 558
           I  ++ +GAL +++ +L SPN +  + A+  L N++S  + Q   +  +  LP LV  L 
Sbjct: 47  IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106

Query: 559 --DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616
             +  +    L  L N+ +  + ++  V  +G LP++ +LL   +E+  + A+  L  + 
Sbjct: 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166

Query: 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDK 645
           S  ++  + V++ G +P+LV++    N++
Sbjct: 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQ 195


>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
          Length = 210

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLPKLVPFLK 558
           I  ++ +GAL +++ +L SPN +  + A+  L N++S  + Q   +  +  LP LV  L 
Sbjct: 47  IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106

Query: 559 DATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616
                +    L  L N+ +  + ++  V  +G LP++ +LL   +E+  + A+  L  + 
Sbjct: 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166

Query: 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE 652
           S  ++  + V   G  P+L ++    N+K +  A E
Sbjct: 167 SGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQE 202


>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
          Length = 210

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 493 LSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLP 551
           LS     I  ++ +GAL +++ +L SPN +  + A+  L N++S  + Q   +  +  LP
Sbjct: 40  LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99

Query: 552 KLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAV 609
            LV  L   +  +    L  L N+ +  + ++  V  +G LP++ +LL   +E+  + A+
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159

Query: 610 AILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE 652
             L  + S  ++  + V   G +  L ++  + N+K +  A E
Sbjct: 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202


>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
          Length = 210

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLPKLVPFLK 558
           I  ++ +GAL +++ +L SPN +  + A+  L N++S  + Q   +  +  LP LV  L 
Sbjct: 47  IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106

Query: 559 DATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616
                +    L  L N+ +  + ++  V  +G LP++ +LL   +E+  + A+  L  + 
Sbjct: 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166

Query: 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE 652
           S  ++  + V   G +  L ++  + N+K +  A E
Sbjct: 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202


>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
 pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
 pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
 pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
          Length = 281

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
           IP+     +S  LM +P +  SG T++R  I++  +   H  P T+  L  + L PN AM
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264

Query: 325 KDLISKW 331
           K++I  +
Sbjct: 265 KEVIDAF 271


>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
 pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
 pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
 pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
          Length = 78

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
           IP+     +S  LM +P +  SG T++R  I++  +   H  P T+  L  + L PN AM
Sbjct: 2   IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61

Query: 325 KDLI 328
           K++I
Sbjct: 62  KEVI 65


>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
           Hsp70 Interacting Protein
          Length = 179

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
           IP+     +S  LM +P +  SG T++R  I++  +   H  P T+  L    L PN AM
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162

Query: 325 KDLIS 329
           K++I 
Sbjct: 163 KEVID 167


>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
 pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
          Length = 80

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
           IP+     +S  LM +P +  SG T++R  I++  +   H  P T+  L    L PN AM
Sbjct: 10  IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69

Query: 325 KDLI 328
           K++I
Sbjct: 70  KEVI 73


>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
          Length = 496

 Score = 38.9 bits (89), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 125 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 184

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 185 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 242

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 243 SYLTDGPNERIEMVVKKGVVPQLVKL 268


>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
 pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
 pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
           Peptide
 pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
           (fen1)
          Length = 510

 Score = 38.9 bits (89), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 199 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKL 282


>pdb|1IAL|A Chain A, Importin Alpha, Mouse
          Length = 453

 Score = 38.5 bits (88), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 115 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 174

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 175 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 232

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 233 SYLTDGPNERIEMVVKKGVVPQLVKL 258


>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
          Length = 461

 Score = 38.5 bits (88), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 123 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 182

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 183 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 240

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 241 SYLTDGPNERIEMVVKKGVVPQLVKL 266


>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
          Length = 509

 Score = 38.5 bits (88), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 199 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKL 282


>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
 pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
 pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
 pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
 pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
 pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
          Length = 510

 Score = 38.5 bits (88), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 199 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKL 282


>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
           Complex
 pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
           Complex
          Length = 466

 Score = 38.5 bits (88), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 95  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 154

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 155 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 212

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 213 SYLTDGPNERIEMVVKKGVVPQLVKL 238


>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
           Complex
 pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
 pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
           Alpha(70-529) Complex
 pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
           Retinoblastoma Protein Complex
 pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
           Laevis Phosphoprotein Complex
 pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
 pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
           Importin Alpha
          Length = 460

 Score = 38.5 bits (88), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 89  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 148

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 149 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 207 SYLTDGPNERIEMVVKKGVVPQLVKL 232


>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
           Encephalitis Virus Capsid Protein Nls And Importin Alpha
          Length = 426

 Score = 38.1 bits (87), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 88  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 147

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 148 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 206 SYLTDGPNERIEMVVKKGVVPQLVKL 231


>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
           Importin-Alpha
          Length = 422

 Score = 38.1 bits (87), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 84  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 143

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 144 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 202 SYLTDGPNERIEMVVKKGVVPQLVKL 227


>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
          Length = 427

 Score = 38.1 bits (87), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 89  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 148

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 149 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 207 SYLTDGPNERIEMVVKKGVVPQLVKL 232


>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
           Plscr1-Nls
          Length = 428

 Score = 38.1 bits (87), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 89  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 148

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 149 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 207 SYLTDGPNERIEMVVKKGVVPQLVKL 232


>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
          Length = 427

 Score = 38.1 bits (87), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 88  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 147

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 148 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 206 SYLTDGPNERIEMVVKKGVVPQLVKL 231


>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
          Length = 424

 Score = 38.1 bits (87), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-----IQSHIAPSEFLPKL-VPF 556
           +V  GA+ + +++L SP+    E A+  L N++ D       +  H A    L  L VP 
Sbjct: 84  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 143

Query: 557 LKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
           L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   +
Sbjct: 144 L--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201

Query: 613 LCLCSQRDQYCKLVMNEGVIPSLVKI 638
             L    ++  ++V+ +GV+P LVK+
Sbjct: 202 SYLTDGPNERIEMVVKKGVVPQLVKL 227


>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
           ALPHA2
          Length = 529

 Score = 36.6 bits (83), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 14/147 (9%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSS------DVDIQSHIAPSEFLPKL-VP 555
           +V  GA+ + +++L SP+    E A+  L N++       D+ I+ H A    L  L VP
Sbjct: 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVP 216

Query: 556 FLKDATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611
            L  +TLA   L      L N+C  ++    +      LP++  LL     E    +   
Sbjct: 217 DL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 274

Query: 612 LLCLCSQRDQYCKLVMNEGVIPSLVKI 638
           +  L    ++  ++V+ +GV+P LVK+
Sbjct: 275 ISYLTDGPNERIEMVVKKGVVPQLVKL 301


>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
 pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
          Length = 467

 Score = 34.7 bits (78), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDV----DIQSHIAPSEFLPKLVPFLK 558
           +V  GA+ + +++L SP+    E A+  L N++ D     D+       + L  L+    
Sbjct: 90  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPD 149

Query: 559 DATLAVSCL----VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614
            ++LA   L      L N+C  ++    +      LP++  LL     E        +  
Sbjct: 150 MSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISY 209

Query: 615 LCSQRDQYCKLVMNEGVIPSLVKI 638
           L    ++   +V+  GV+P LVK+
Sbjct: 210 LTDGPNERIGMVVKTGVVPQLVKL 233


>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
           Conjugation Factor E4a
          Length = 98

 Score = 32.7 bits (73), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 269 FKCPLSLRLMYDPVVIESGQ-TFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDL 327
           F  P+   LM DPVV+ S + T +R  I +     + T P  +  L    + PNT +K+ 
Sbjct: 23  FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRPNTELKEK 81

Query: 328 ISKW 331
           I +W
Sbjct: 82  IQRW 85


>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Tripartite Motif-Containing Protein 39
          Length = 58

 Score = 32.3 bits (72), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 271 CPLSLRLMYDPVVIESGQTFERMWIQKWFE--EGNHTCP 307
           C + L  + +PV+IE G  F +  I +W+E  E +  CP
Sbjct: 18  CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56


>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
 pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
          Length = 447

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI-QSHIAPSEFLPKLVPFLKDA- 560
           ++ +GA+   + +L S     QE A+  L N++ D  + + ++     LP L+       
Sbjct: 100 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN 159

Query: 561 --TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
             T+  + +  L N+C  +       + S CL  ++ LL +   +    A   L  L   
Sbjct: 160 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 219

Query: 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
            +   + V++ GV   LV++ ++ + K    AL
Sbjct: 220 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 252



 Score = 29.3 bits (64), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 540 IQSHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAEL 596
           I   I+    + + V FLK   + TL      +L N+ +    +  +V  +G +P   EL
Sbjct: 53  IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL 112

Query: 597 LEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
           L    E+ QE AV  L  +          V++  ++P L+++
Sbjct: 113 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 154


>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
           Subunit In Complex With Human Importin Alpha5
 pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
           Subunit In Complex With Human Importin Alpha5
          Length = 450

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI-QSHIAPSEFLPKLVPFLKDA- 560
           ++ +GA+   + +L S     QE A+  L N++ D  + + ++     LP L+       
Sbjct: 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN 162

Query: 561 --TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
             T+  + +  L N+C  +       + S CL  ++ LL +   +    A   L  L   
Sbjct: 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222

Query: 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
            +   + V++ GV   LV++ ++ + K    AL
Sbjct: 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255



 Score = 29.3 bits (64), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 540 IQSHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAEL 596
           I   I+    + + V FLK   + TL      +L N+ +    +  +V  +G +P   EL
Sbjct: 56  IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL 115

Query: 597 LEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
           L    E+ QE AV  L  +          V++  ++P L+++
Sbjct: 116 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157


>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Tripartite Motif Protein 30
          Length = 85

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE-----EGNHTCPKTKMKLVCQSL 318
           +I E   CP+ L L+ +PV  +   +F R  I   +E     +G   CP  ++     +L
Sbjct: 15  MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74

Query: 319 TPNTAMKDLI 328
            PN  + +++
Sbjct: 75  KPNLHVANIV 84


>pdb|4EF7|A Chain A, Udp-Xylose Synthase
 pdb|4EF7|B Chain B, Udp-Xylose Synthase
 pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
 pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
          Length = 337

 Score = 30.4 bits (67), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 651 LELRRLLRDVAYSVEQQCFGSEIDTSKDASSDPRKEKPSSKTSRI-FGWK 699
           LE  +L++++  S      GSEI    +A  DP+K KP  K +++  GW+
Sbjct: 249 LEFAQLIKNLVGS------GSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 292


>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
           Decarboxylase
          Length = 343

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 651 LELRRLLRDVAYSVEQQCFGSEIDTSKDASSDPRKEKPSSKTSRI-FGWK 699
           LE  +L++++  S      GSEI    +A  DP+K KP  K +++  GW+
Sbjct: 271 LEFAQLIKNLVGS------GSEIQFLSEAQDDPQKRKPDIKKAKLXLGWE 314


>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
           Ufd2p
          Length = 982

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 259 NLSRAIIPEVFKCPLSLRLMYDPVVIESGQ-TFERMWIQKWFEEGNHTCPKTKMKLVCQS 317
           +L    +P+ F  PL   +M DPV++ + +   +R  I+      + T P  +M L  + 
Sbjct: 896 DLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLED 954

Query: 318 LTPNTAMKDLI 328
           +TPN  ++  I
Sbjct: 955 VTPNEELRQKI 965


>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
           Ubiquitin-Like (Ubl) Domain Of Rad23
 pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
           Ubiquitin-Like (Ubl) Domain Of Dsk2
          Length = 968

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 259 NLSRAIIPEVFKCPLSLRLMYDPVVIESGQ-TFERMWIQKWFEEGNHTCPKTKMKLVCQS 317
           +L    +P+ F  PL   +M DPV++ + +   +R  I+      + T P  +M L  + 
Sbjct: 882 DLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLED 940

Query: 318 LTPNTAMKDLI 328
           +TPN  ++  I
Sbjct: 941 VTPNEELRQKI 951


>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
           Thermotoga Maritima
          Length = 216

 Score = 29.3 bits (64), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 13/87 (14%)

Query: 125 LREATFILDSSD-------EEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSP 177
           L EA  I DS +       EE  +V  ELL+E+    ++LEF + K ++LA   L  ++P
Sbjct: 54  LXEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLA---LATSTP 110

Query: 178 KAILIE---KRSIKKLLDKVGDSDQSK 201
           +   +E   +  ++K  D     DQ K
Sbjct: 111 QREALERLRRLDLEKYFDVXVFGDQVK 137


>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
           Space Group
 pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
           Space Group
 pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
           Space Group
          Length = 118

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP-NTAMKDL 327
           ++CP+ L  + + V    G  F +  I K   +  H CP     L+   L P N A +++
Sbjct: 19  YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78

Query: 328 ISKWCMNLCSSMNDLH 343
           +S   M  C +   LH
Sbjct: 79  LS--LMVKCPNEGCLH 92


>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
           Heterodimer
          Length = 112

 Score = 29.3 bits (64), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWF--EEGNHTCPKTKMKLVCQSLTPNTAM 324
           ++ +CP+ L L+ +PV  +    F +  + K    ++G   CP  K  +  +SL  +T  
Sbjct: 20  KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 325 KDLISKWCMNLCSSMND 341
             L+ +    +C+   D
Sbjct: 80  SQLVEELLKIICAFQLD 96


>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
 pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
          Length = 170

 Score = 29.3 bits (64), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP-NTAMKDL 327
           ++CP+ L  + + V    G  F +  I K   +  H CP     L+   L P N A +++
Sbjct: 19  YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78

Query: 328 ISKWCMNLCSSMNDLH 343
           +S   M  C +   LH
Sbjct: 79  LS--LMVKCPNEGCLH 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,380,516
Number of Sequences: 62578
Number of extensions: 687059
Number of successful extensions: 1935
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1823
Number of HSP's gapped (non-prelim): 133
length of query: 710
length of database: 14,973,337
effective HSP length: 106
effective length of query: 604
effective length of database: 8,340,069
effective search space: 5037401676
effective search space used: 5037401676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)