Query 036199
Match_columns 710
No_of_seqs 479 out of 2570
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 5.9E-26 1.3E-30 280.1 24.5 270 386-660 17-313 (2102)
2 KOG4224 Armadillo repeat prote 99.9 8.4E-25 1.8E-29 224.7 16.0 268 390-663 135-409 (550)
3 PLN03200 cellulose synthase-in 99.9 2.2E-23 4.9E-28 257.5 24.8 272 388-665 453-770 (2102)
4 KOG4224 Armadillo repeat prote 99.9 5.5E-22 1.2E-26 204.1 17.4 261 393-660 179-447 (550)
5 KOG0166 Karyopherin (importin) 99.9 4.7E-21 1E-25 210.2 19.9 264 392-660 121-394 (514)
6 PF04564 U-box: U-box domain; 99.9 1.5E-22 3.3E-27 169.1 5.3 72 265-336 1-72 (73)
7 KOG0166 Karyopherin (importin) 99.8 4.4E-18 9.4E-23 187.0 22.3 268 388-659 73-351 (514)
8 COG5064 SRP1 Karyopherin (impo 99.8 1.5E-18 3.3E-23 177.5 13.4 259 397-660 131-399 (526)
9 PF05804 KAP: Kinesin-associat 99.8 1E-17 2.3E-22 193.2 18.0 216 441-661 263-481 (708)
10 COG5064 SRP1 Karyopherin (impo 99.7 7.2E-17 1.6E-21 165.4 15.7 265 388-658 78-355 (526)
11 smart00504 Ubox Modified RING 99.7 4.2E-17 9.1E-22 132.5 5.1 63 268-331 1-63 (63)
12 PF05804 KAP: Kinesin-associat 99.7 2.9E-15 6.3E-20 173.1 22.0 269 388-662 297-652 (708)
13 KOG2122 Beta-catenin-binding p 99.5 6.2E-14 1.3E-18 163.8 16.1 264 399-664 316-606 (2195)
14 KOG4199 Uncharacterized conser 99.5 7.6E-13 1.6E-17 136.1 19.7 263 391-658 157-443 (461)
15 KOG4199 Uncharacterized conser 99.5 2.1E-12 4.6E-17 132.9 19.7 261 393-660 119-404 (461)
16 KOG1048 Neural adherens juncti 99.5 5.7E-13 1.2E-17 151.0 14.6 269 388-661 240-597 (717)
17 PF04826 Arm_2: Armadillo-like 99.3 2.9E-11 6.3E-16 125.1 17.7 195 464-664 8-210 (254)
18 KOG1048 Neural adherens juncti 99.3 3.9E-11 8.5E-16 136.3 13.6 207 469-677 234-470 (717)
19 PF04826 Arm_2: Armadillo-like 99.2 1.6E-10 3.5E-15 119.6 15.9 227 419-657 8-242 (254)
20 PF10508 Proteasom_PSMB: Prote 99.1 7.8E-09 1.7E-13 118.1 23.1 266 388-658 84-365 (503)
21 cd00020 ARM Armadillo/beta-cat 99.1 5.2E-10 1.1E-14 101.4 11.0 115 502-617 2-120 (120)
22 KOG1222 Kinesin associated pro 99.1 4.2E-10 9.1E-15 120.5 10.7 197 441-639 277-476 (791)
23 cd00020 ARM Armadillo/beta-cat 99.0 4E-09 8.6E-14 95.6 13.2 115 543-658 2-119 (120)
24 PLN03208 E3 ubiquitin-protein 99.0 1.9E-10 4.1E-15 111.8 4.3 62 262-323 12-88 (193)
25 PF15227 zf-C3HC4_4: zinc fing 99.0 1.9E-10 4.2E-15 85.1 2.9 39 271-309 1-42 (42)
26 KOG2122 Beta-catenin-binding p 99.0 1.5E-09 3.2E-14 128.1 11.4 219 397-620 367-604 (2195)
27 KOG1222 Kinesin associated pro 99.0 1.4E-08 3E-13 109.1 16.9 236 401-642 324-602 (791)
28 KOG4642 Chaperone-dependent E3 98.9 7.3E-10 1.6E-14 110.0 3.9 76 262-337 205-280 (284)
29 TIGR00599 rad18 DNA repair pro 98.9 1.9E-09 4E-14 117.1 6.1 70 264-334 22-91 (397)
30 PF11789 zf-Nse: Zinc-finger o 98.8 2.7E-09 5.9E-14 84.2 1.9 44 267-310 10-55 (57)
31 PF10508 Proteasom_PSMB: Prote 98.7 8.8E-07 1.9E-11 101.3 19.4 207 428-642 43-255 (503)
32 PF03224 V-ATPase_H_N: V-ATPas 98.6 6.6E-07 1.4E-11 96.3 15.8 227 423-652 55-307 (312)
33 PF13923 zf-C3HC4_2: Zinc fing 98.6 2E-08 4.4E-13 73.2 2.5 38 271-309 1-39 (39)
34 PF03224 V-ATPase_H_N: V-ATPas 98.6 1.5E-06 3.2E-11 93.5 16.5 210 392-607 68-304 (312)
35 KOG4500 Rho/Rac GTPase guanine 98.6 2.7E-06 5.9E-11 90.9 17.4 253 398-650 240-510 (604)
36 PF13445 zf-RING_UBOX: RING-ty 98.5 5.3E-08 1.1E-12 72.2 2.0 36 271-307 1-43 (43)
37 KOG0168 Putative ubiquitin fus 98.5 7.9E-06 1.7E-10 93.6 19.0 246 388-641 174-437 (1051)
38 PF14835 zf-RING_6: zf-RING of 98.4 1.4E-07 3.1E-12 74.7 2.8 58 268-328 7-65 (65)
39 KOG4500 Rho/Rac GTPase guanine 98.4 5.1E-06 1.1E-10 88.9 14.8 270 391-662 97-434 (604)
40 cd00256 VATPase_H VATPase_H, r 98.4 8.1E-06 1.7E-10 90.2 16.8 269 386-657 106-423 (429)
41 PF00097 zf-C3HC4: Zinc finger 98.4 2.7E-07 5.8E-12 68.0 2.9 39 271-309 1-41 (41)
42 PRK09687 putative lyase; Provi 98.4 3.4E-05 7.3E-10 81.6 20.0 220 388-655 30-278 (280)
43 PRK09687 putative lyase; Provi 98.3 2.2E-05 4.7E-10 83.1 17.2 189 424-655 24-217 (280)
44 KOG0823 Predicted E3 ubiquitin 98.2 6.3E-07 1.4E-11 89.0 2.5 58 266-323 45-104 (230)
45 PHA02929 N1R/p28-like protein; 98.2 1.1E-06 2.4E-11 89.4 4.0 48 266-314 172-227 (238)
46 PF13920 zf-C3HC4_3: Zinc fing 98.2 1.1E-06 2.4E-11 67.7 3.1 47 267-314 1-48 (50)
47 KOG0287 Postreplication repair 98.2 7E-07 1.5E-11 92.1 2.2 70 264-334 19-88 (442)
48 KOG2177 Predicted E3 ubiquitin 98.2 1.3E-06 2.8E-11 92.6 3.8 70 264-336 9-78 (386)
49 KOG2042 Ubiquitin fusion degra 98.1 2.3E-06 5.1E-11 100.6 5.5 73 262-335 864-937 (943)
50 COG5113 UFD2 Ubiquitin fusion 98.1 4.4E-06 9.6E-11 92.5 6.5 75 259-334 845-920 (929)
51 cd00162 RING RING-finger (Real 98.1 3E-06 6.5E-11 62.9 3.5 43 270-312 1-44 (45)
52 KOG0168 Putative ubiquitin fus 98.1 8.5E-05 1.8E-09 85.4 15.9 203 424-634 168-384 (1051)
53 KOG0320 Predicted E3 ubiquitin 98.0 3.8E-06 8.2E-11 79.9 3.3 51 269-320 132-184 (187)
54 KOG2160 Armadillo/beta-catenin 98.0 0.00016 3.5E-09 76.9 15.7 177 484-661 101-285 (342)
55 PF13639 zf-RING_2: Ring finge 98.0 3.1E-06 6.7E-11 63.4 1.7 40 270-310 2-44 (44)
56 KOG2160 Armadillo/beta-catenin 98.0 0.00016 3.5E-09 76.8 14.8 182 438-619 94-284 (342)
57 smart00184 RING Ring finger. E 98.0 7E-06 1.5E-10 58.7 3.3 39 271-309 1-39 (39)
58 COG5432 RAD18 RING-finger-cont 97.9 6.1E-06 1.3E-10 83.6 3.3 68 266-334 23-90 (391)
59 PRK13800 putative oxidoreducta 97.9 0.0012 2.6E-08 81.0 22.4 217 388-657 628-865 (897)
60 PF00514 Arm: Armadillo/beta-c 97.8 3.2E-05 7E-10 56.9 4.6 40 496-535 1-40 (41)
61 KOG4646 Uncharacterized conser 97.8 9.5E-05 2.1E-09 67.9 8.3 150 505-655 14-166 (173)
62 PRK13800 putative oxidoreducta 97.8 0.0018 3.8E-08 79.6 21.9 214 388-656 659-896 (897)
63 PF05536 Neurochondrin: Neuroc 97.8 0.00038 8.3E-09 80.2 15.2 151 468-620 5-171 (543)
64 cd00256 VATPase_H VATPase_H, r 97.7 0.0011 2.4E-08 73.6 17.4 204 394-606 67-297 (429)
65 TIGR00570 cdk7 CDK-activating 97.7 4E-05 8.7E-10 80.4 5.6 63 267-329 2-73 (309)
66 KOG0311 Predicted E3 ubiquitin 97.7 5.6E-06 1.2E-10 86.5 -0.8 67 264-330 39-107 (381)
67 PHA02926 zinc finger-like prot 97.7 2.3E-05 4.9E-10 77.4 3.2 56 264-321 166-235 (242)
68 KOG0317 Predicted E3 ubiquitin 97.7 2.2E-05 4.8E-10 80.3 3.3 54 265-319 236-289 (293)
69 KOG4646 Uncharacterized conser 97.6 0.00035 7.7E-09 64.2 9.7 119 467-585 15-139 (173)
70 KOG2973 Uncharacterized conser 97.6 0.0033 7.1E-08 65.5 17.3 262 388-661 10-317 (353)
71 KOG0946 ER-Golgi vesicle-tethe 97.6 0.0051 1.1E-07 70.9 20.3 241 395-642 37-327 (970)
72 PF01602 Adaptin_N: Adaptin N 97.5 0.0029 6.3E-08 72.8 17.9 243 388-659 86-333 (526)
73 PF00514 Arm: Armadillo/beta-c 97.5 0.00015 3.2E-09 53.3 4.4 41 576-617 1-41 (41)
74 KOG0978 E3 ubiquitin ligase in 97.5 0.0015 3.2E-08 75.5 14.6 55 266-320 641-695 (698)
75 KOG2973 Uncharacterized conser 97.5 0.002 4.4E-08 67.0 13.9 199 425-630 5-216 (353)
76 KOG0297 TNF receptor-associate 97.5 7.5E-05 1.6E-09 82.5 3.8 69 265-334 18-88 (391)
77 PF01602 Adaptin_N: Adaptin N 97.5 0.0019 4E-08 74.4 15.5 241 388-658 121-368 (526)
78 PF14664 RICTOR_N: Rapamycin-i 97.5 0.019 4.1E-07 63.2 22.1 260 392-657 36-362 (371)
79 KOG2759 Vacuolar H+-ATPase V1 97.4 0.0071 1.5E-07 65.5 17.8 267 386-657 119-436 (442)
80 KOG1789 Endocytosis protein RM 97.4 0.013 2.8E-07 69.2 20.4 240 397-641 1741-2141(2235)
81 KOG3678 SARM protein (with ste 97.4 0.002 4.3E-08 70.0 13.2 235 418-661 175-454 (832)
82 PF14634 zf-RING_5: zinc-RING 97.4 0.00013 2.7E-09 54.7 2.9 41 270-311 1-44 (44)
83 PF05536 Neurochondrin: Neuroc 97.4 0.0038 8.1E-08 72.1 15.9 231 424-660 6-262 (543)
84 KOG4159 Predicted E3 ubiquitin 97.3 0.00014 3E-09 79.6 3.8 74 261-335 77-155 (398)
85 KOG0946 ER-Golgi vesicle-tethe 97.3 0.0053 1.1E-07 70.8 16.1 190 467-659 21-241 (970)
86 KOG2164 Predicted E3 ubiquitin 97.3 0.00015 3.3E-09 79.8 2.9 71 266-336 184-262 (513)
87 KOG2660 Locus-specific chromos 97.1 0.00021 4.5E-09 74.7 2.2 66 265-331 12-82 (331)
88 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00042 9.1E-09 57.9 3.5 39 271-310 22-73 (73)
89 COG5574 PEX10 RING-finger-cont 97.1 0.00023 4.9E-09 72.2 2.0 50 267-316 214-264 (271)
90 COG5222 Uncharacterized conser 97.1 0.00062 1.3E-08 69.5 5.0 66 269-334 275-342 (427)
91 smart00185 ARM Armadillo/beta- 97.1 0.0011 2.4E-08 48.1 4.9 40 497-536 2-41 (41)
92 KOG1293 Proteins containing ar 97.0 0.0086 1.9E-07 68.0 13.2 161 499-660 369-534 (678)
93 KOG1293 Proteins containing ar 96.9 0.007 1.5E-07 68.7 11.3 121 503-624 415-540 (678)
94 KOG0289 mRNA splicing factor [ 96.8 0.00065 1.4E-08 73.0 2.1 51 269-320 1-52 (506)
95 KOG2734 Uncharacterized conser 96.7 0.066 1.4E-06 58.5 16.7 231 401-638 104-369 (536)
96 KOG3678 SARM protein (with ste 96.7 0.015 3.2E-07 63.5 11.7 223 388-616 187-451 (832)
97 PF11841 DUF3361: Domain of un 96.6 0.038 8.2E-07 53.0 12.6 120 501-620 5-134 (160)
98 PF12861 zf-Apc11: Anaphase-pr 96.5 0.0023 5.1E-08 54.3 3.5 49 266-314 30-82 (85)
99 KOG2171 Karyopherin (importin) 96.5 0.13 2.9E-06 62.2 19.1 245 394-643 262-529 (1075)
100 PTZ00429 beta-adaptin; Provisi 96.5 0.12 2.7E-06 61.6 18.6 213 429-659 107-326 (746)
101 smart00185 ARM Armadillo/beta- 96.3 0.0084 1.8E-07 43.3 5.1 40 577-617 2-41 (41)
102 KOG2759 Vacuolar H+-ATPase V1 96.3 0.18 3.9E-06 55.0 17.0 216 423-642 65-302 (442)
103 COG1413 FOG: HEAT repeat [Ener 96.2 0.21 4.5E-06 54.1 17.7 188 423-655 43-238 (335)
104 PF10165 Ric8: Guanine nucleot 96.2 0.074 1.6E-06 60.2 14.5 238 392-631 43-349 (446)
105 COG5369 Uncharacterized conser 96.2 0.067 1.4E-06 59.6 13.3 253 402-658 410-740 (743)
106 TIGR02270 conserved hypothetic 96.2 0.36 7.8E-06 53.9 19.4 58 589-661 241-298 (410)
107 PF12348 CLASP_N: CLASP N term 96.2 0.031 6.7E-07 57.0 10.3 179 390-576 16-207 (228)
108 PTZ00429 beta-adaptin; Provisi 96.2 0.9 1.9E-05 54.5 23.5 241 388-657 39-283 (746)
109 KOG0824 Predicted E3 ubiquitin 96.1 0.0025 5.3E-08 65.9 1.8 48 270-317 9-56 (324)
110 PF09759 Atx10homo_assoc: Spin 96.1 0.023 5.1E-07 50.4 7.7 66 563-629 3-71 (102)
111 KOG2171 Karyopherin (importin) 96.1 0.38 8.2E-06 58.4 19.9 260 391-661 216-506 (1075)
112 PF13646 HEAT_2: HEAT repeats; 96.0 0.018 4E-07 49.0 6.4 83 509-612 1-87 (88)
113 PF14664 RICTOR_N: Rapamycin-i 95.9 0.18 3.8E-06 55.6 15.1 253 403-663 5-273 (371)
114 PF10165 Ric8: Guanine nucleot 95.8 0.44 9.5E-06 54.0 17.9 259 402-661 2-339 (446)
115 PF13646 HEAT_2: HEAT repeats; 95.7 0.055 1.2E-06 46.1 8.3 84 425-531 1-87 (88)
116 KOG0802 E3 ubiquitin ligase [P 95.7 0.0041 9E-08 72.0 1.4 48 265-313 288-340 (543)
117 KOG1813 Predicted E3 ubiquitin 95.7 0.0054 1.2E-07 63.3 1.9 55 269-325 242-296 (313)
118 PF12348 CLASP_N: CLASP N term 95.6 0.072 1.6E-06 54.3 10.0 149 507-660 53-207 (228)
119 KOG4628 Predicted E3 ubiquitin 95.5 0.0092 2E-07 63.9 2.8 46 269-314 230-278 (348)
120 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.011 2.3E-07 62.0 3.3 65 265-331 110-182 (260)
121 TIGR02270 conserved hypothetic 95.3 0.68 1.5E-05 51.7 16.9 150 422-616 53-206 (410)
122 KOG3039 Uncharacterized conser 95.2 0.0095 2.1E-07 59.7 1.7 36 265-300 40-75 (303)
123 KOG0826 Predicted E3 ubiquitin 95.2 0.013 2.8E-07 61.3 2.7 55 259-314 291-346 (357)
124 KOG2879 Predicted E3 ubiquitin 95.1 0.023 5E-07 58.1 4.2 50 265-314 236-287 (298)
125 KOG0212 Uncharacterized conser 95.0 0.58 1.2E-05 52.8 15.0 188 422-617 249-444 (675)
126 PF04063 DUF383: Domain of unk 94.9 0.085 1.8E-06 52.6 7.5 123 518-640 6-157 (192)
127 KOG3039 Uncharacterized conser 94.9 0.019 4.1E-07 57.7 2.8 54 267-321 220-277 (303)
128 KOG1242 Protein containing ada 94.8 0.46 1E-05 54.2 14.0 226 420-661 210-447 (569)
129 KOG1002 Nucleotide excision re 94.8 0.012 2.6E-07 64.8 1.2 49 267-315 535-587 (791)
130 KOG0212 Uncharacterized conser 94.8 0.6 1.3E-05 52.7 14.3 269 388-662 131-409 (675)
131 COG1413 FOG: HEAT repeat [Ener 94.4 3.2 7E-05 44.8 19.2 175 389-617 51-242 (335)
132 COG5152 Uncharacterized conser 94.3 0.017 3.7E-07 56.1 0.9 44 269-313 197-240 (259)
133 KOG1789 Endocytosis protein RM 94.3 0.72 1.6E-05 55.3 14.0 134 522-658 1740-1882(2235)
134 PF11841 DUF3361: Domain of un 94.1 0.39 8.4E-06 46.2 9.8 117 543-660 6-133 (160)
135 KOG4413 26S proteasome regulat 94.1 2 4.3E-05 45.7 15.6 242 398-642 188-464 (524)
136 KOG4367 Predicted Zn-finger pr 94.1 0.018 3.8E-07 61.9 0.7 33 267-299 3-35 (699)
137 KOG3036 Protein involved in ce 94.1 0.66 1.4E-05 47.4 11.7 172 444-618 96-292 (293)
138 KOG2979 Protein involved in DN 94.1 0.043 9.3E-07 55.9 3.3 65 266-330 174-244 (262)
139 KOG2734 Uncharacterized conser 94.0 0.91 2E-05 49.9 13.3 173 485-658 103-302 (536)
140 KOG4413 26S proteasome regulat 93.9 1.8 3.9E-05 45.9 14.9 230 397-631 98-346 (524)
141 KOG1242 Protein containing ada 93.9 1.6 3.5E-05 49.9 15.6 217 386-619 101-326 (569)
142 COG5240 SEC21 Vesicle coat com 93.6 2.8 6.1E-05 47.6 16.5 59 600-661 499-557 (898)
143 PF06371 Drf_GBD: Diaphanous G 93.6 0.11 2.4E-06 51.2 5.3 75 542-616 101-186 (187)
144 COG5243 HRD1 HRD ubiquitin lig 93.6 0.045 9.7E-07 58.1 2.5 47 266-313 285-344 (491)
145 COG5540 RING-finger-containing 93.4 0.057 1.2E-06 55.9 2.9 47 269-315 324-373 (374)
146 KOG1517 Guanine nucleotide bin 93.3 2.2 4.8E-05 51.5 15.8 190 465-655 509-728 (1387)
147 PF13513 HEAT_EZ: HEAT-like re 93.2 0.18 3.8E-06 39.2 4.9 52 483-534 4-55 (55)
148 KOG0804 Cytoplasmic Zn-finger 92.7 0.057 1.2E-06 58.9 1.8 43 269-314 176-222 (493)
149 COG5369 Uncharacterized conser 92.3 0.47 1E-05 53.2 8.3 179 461-639 424-617 (743)
150 KOG1517 Guanine nucleotide bin 92.3 1.7 3.6E-05 52.5 13.1 190 468-660 472-672 (1387)
151 PF12031 DUF3518: Domain of un 92.2 0.4 8.6E-06 48.9 7.0 80 521-600 138-228 (257)
152 PF13513 HEAT_EZ: HEAT-like re 91.9 0.3 6.5E-06 37.9 4.6 54 602-656 1-54 (55)
153 KOG1645 RING-finger-containing 91.9 0.084 1.8E-06 56.9 1.9 60 269-328 5-70 (463)
154 KOG2259 Uncharacterized conser 91.8 1.1 2.3E-05 51.7 10.3 107 542-659 367-475 (823)
155 KOG1248 Uncharacterized conser 91.7 4.2 9.1E-05 50.0 15.8 209 439-657 666-896 (1176)
156 KOG3113 Uncharacterized conser 91.7 0.11 2.5E-06 52.4 2.5 51 266-319 109-163 (293)
157 KOG3036 Protein involved in ce 91.6 4.9 0.00011 41.3 13.8 173 484-658 97-290 (293)
158 KOG0883 Cyclophilin type, U bo 91.5 0.14 3E-06 54.8 2.9 58 268-326 40-97 (518)
159 KOG2999 Regulator of Rac1, req 91.4 1.1 2.4E-05 50.6 9.8 154 509-663 85-247 (713)
160 KOG4151 Myosin assembly protei 91.4 3.6 7.7E-05 48.6 14.3 227 407-641 488-723 (748)
161 KOG2999 Regulator of Rac1, req 91.3 7.4 0.00016 44.2 16.0 150 470-619 85-244 (713)
162 PF12755 Vac14_Fab1_bd: Vacuol 91.2 0.92 2E-05 40.1 7.4 71 588-659 27-97 (97)
163 PF08045 CDC14: Cell division 91.1 1.8 3.9E-05 45.0 10.6 94 563-657 108-205 (257)
164 PF13764 E3_UbLigase_R4: E3 ub 91.1 7 0.00015 47.3 16.9 238 418-658 112-405 (802)
165 PF05659 RPW8: Arabidopsis bro 91.0 2 4.3E-05 41.0 10.1 101 18-125 29-133 (147)
166 PF04078 Rcd1: Cell differenti 90.9 2.3 5E-05 44.2 11.0 219 394-615 8-260 (262)
167 KOG2817 Predicted E3 ubiquitin 90.8 0.15 3.3E-06 55.1 2.5 41 269-309 335-380 (394)
168 KOG1062 Vesicle coat complex A 90.6 12 0.00025 44.5 17.3 98 511-614 354-467 (866)
169 PF09759 Atx10homo_assoc: Spin 89.8 0.88 1.9E-05 40.5 6.0 62 605-666 3-66 (102)
170 KOG2023 Nuclear transport rece 89.3 3.2 7E-05 48.0 11.3 170 422-596 127-307 (885)
171 KOG1788 Uncharacterized conser 88.7 6 0.00013 47.9 13.2 246 403-658 664-981 (2799)
172 KOG1241 Karyopherin (importin) 88.1 7.6 0.00017 45.7 13.5 252 394-665 187-483 (859)
173 PF04063 DUF383: Domain of unk 88.1 2.8 6E-05 41.9 9.0 90 466-555 50-154 (192)
174 PF02891 zf-MIZ: MIZ/SP-RING z 88.1 0.44 9.6E-06 36.6 2.6 45 268-312 2-50 (50)
175 KOG2023 Nuclear transport rece 88.0 5.5 0.00012 46.2 12.1 259 386-661 179-507 (885)
176 KOG1824 TATA-binding protein-i 88.0 19 0.00041 43.6 16.6 261 388-664 12-291 (1233)
177 PF08569 Mo25: Mo25-like; Int 87.8 14 0.0003 40.3 14.8 155 502-657 71-236 (335)
178 smart00744 RINGv The RING-vari 87.6 0.56 1.2E-05 35.9 2.9 41 270-310 1-49 (49)
179 KOG1062 Vesicle coat complex A 87.3 6.8 0.00015 46.3 12.5 145 424-576 104-282 (866)
180 COG5194 APC11 Component of SCF 86.9 0.57 1.2E-05 39.1 2.7 43 270-313 33-80 (88)
181 KOG2611 Neurochondrin/leucine- 86.8 10 0.00022 42.4 12.9 115 498-615 47-180 (698)
182 KOG3161 Predicted E3 ubiquitin 86.3 0.35 7.6E-06 54.9 1.6 61 267-330 10-78 (861)
183 COG5181 HSH155 U2 snRNP splice 86.2 20 0.00043 41.4 15.0 252 386-660 609-871 (975)
184 KOG1059 Vesicle coat complex A 85.9 20 0.00043 42.2 15.1 246 388-660 188-444 (877)
185 KOG0213 Splicing factor 3b, su 85.4 3.4 7.4E-05 48.3 8.8 145 509-659 801-954 (1172)
186 KOG3800 Predicted E3 ubiquitin 85.2 0.55 1.2E-05 48.8 2.2 31 285-315 22-52 (300)
187 KOG1059 Vesicle coat complex A 85.2 17 0.00036 42.8 14.0 62 589-655 300-361 (877)
188 KOG0213 Splicing factor 3b, su 84.9 19 0.00042 42.4 14.3 252 386-660 804-1066(1172)
189 KOG1734 Predicted RING-contain 84.6 0.26 5.6E-06 50.4 -0.4 55 267-321 223-288 (328)
190 KOG2611 Neurochondrin/leucine- 84.3 18 0.00038 40.7 13.2 167 444-613 28-221 (698)
191 PF05004 IFRD: Interferon-rela 84.1 26 0.00056 37.7 14.6 154 508-662 87-260 (309)
192 KOG1061 Vesicle coat complex A 83.9 11 0.00025 44.3 12.3 250 388-663 128-420 (734)
193 KOG1241 Karyopherin (importin) 83.5 14 0.00031 43.5 12.7 201 422-627 318-540 (859)
194 PF12755 Vac14_Fab1_bd: Vacuol 83.5 1.5 3.2E-05 38.8 3.9 66 506-573 26-94 (97)
195 KOG1078 Vesicle coat complex C 83.4 54 0.0012 39.1 17.2 249 388-660 252-533 (865)
196 PF04078 Rcd1: Cell differenti 83.0 6.3 0.00014 41.0 8.8 216 440-657 8-260 (262)
197 KOG1493 Anaphase-promoting com 82.8 0.42 9E-06 39.5 0.2 50 265-314 28-81 (84)
198 PF02985 HEAT: HEAT repeat; I 82.7 1.9 4.2E-05 29.3 3.5 28 509-536 2-29 (31)
199 KOG1061 Vesicle coat complex A 82.6 4.8 0.0001 47.3 8.7 198 434-643 93-293 (734)
200 PF11793 FANCL_C: FANCL C-term 82.3 0.57 1.2E-05 38.7 0.8 47 268-314 2-66 (70)
201 PF14570 zf-RING_4: RING/Ubox 82.3 1.2 2.5E-05 33.9 2.4 43 271-313 1-47 (48)
202 KOG1824 TATA-binding protein-i 81.7 7.3 0.00016 46.9 9.6 183 426-614 571-758 (1233)
203 KOG1001 Helicase-like transcri 81.7 0.37 8.1E-06 56.9 -0.7 46 269-315 455-501 (674)
204 COG5231 VMA13 Vacuolar H+-ATPa 81.7 15 0.00033 39.2 11.0 218 440-657 162-426 (432)
205 PF12031 DUF3518: Domain of un 81.5 5.1 0.00011 41.1 7.4 87 562-648 140-234 (257)
206 PF11698 V-ATPase_H_C: V-ATPas 81.5 3.7 8.1E-05 37.6 5.8 69 589-657 44-113 (119)
207 KOG1039 Predicted E3 ubiquitin 81.2 1 2.2E-05 48.9 2.4 49 266-314 159-221 (344)
208 PF05004 IFRD: Interferon-rela 81.2 41 0.00089 36.2 14.8 170 441-615 57-255 (309)
209 KOG0828 Predicted E3 ubiquitin 81.1 0.93 2E-05 50.2 2.1 51 265-315 568-635 (636)
210 PF14668 RICTOR_V: Rapamycin-i 81.1 2.9 6.3E-05 34.9 4.6 62 524-585 4-68 (73)
211 PF11698 V-ATPase_H_C: V-ATPas 80.9 3.7 7.9E-05 37.6 5.6 77 539-616 32-114 (119)
212 KOG0396 Uncharacterized conser 80.9 1.2 2.5E-05 48.0 2.7 49 268-316 330-381 (389)
213 PF02985 HEAT: HEAT repeat; I 80.7 3 6.5E-05 28.3 3.9 29 590-618 2-30 (31)
214 KOG0825 PHD Zn-finger protein 80.6 0.39 8.5E-06 55.7 -0.9 47 268-315 123-172 (1134)
215 PF13764 E3_UbLigase_R4: E3 ub 79.5 12 0.00027 45.2 11.0 162 461-628 77-269 (802)
216 PF08569 Mo25: Mo25-like; Int 79.4 95 0.0021 33.8 16.9 197 419-619 72-285 (335)
217 COG5096 Vesicle coat complex, 79.3 24 0.00051 42.3 13.0 163 390-575 28-195 (757)
218 PF07814 WAPL: Wings apart-lik 79.1 27 0.00058 38.5 12.8 232 392-635 33-317 (361)
219 COG5109 Uncharacterized conser 78.9 1.2 2.6E-05 46.7 1.9 43 267-309 335-382 (396)
220 KOG1077 Vesicle coat complex A 77.8 1.1E+02 0.0025 36.1 17.2 82 390-482 120-201 (938)
221 KOG0827 Predicted E3 ubiquitin 77.4 1.3 2.9E-05 47.6 1.9 49 267-317 3-59 (465)
222 COG5181 HSH155 U2 snRNP splice 77.1 3.8 8.2E-05 47.0 5.3 147 508-659 605-759 (975)
223 KOG1077 Vesicle coat complex A 75.3 55 0.0012 38.7 13.8 206 396-619 163-400 (938)
224 COG5209 RCD1 Uncharacterized p 75.2 71 0.0015 32.7 13.0 194 388-583 54-276 (315)
225 COG5219 Uncharacterized conser 74.8 1.2 2.6E-05 52.9 0.7 49 266-314 1467-1523(1525)
226 PF06025 DUF913: Domain of Unk 74.5 61 0.0013 36.0 14.0 95 467-561 105-209 (379)
227 PF08045 CDC14: Cell division 74.4 8.1 0.00018 40.3 6.6 91 485-575 110-207 (257)
228 KOG1785 Tyrosine kinase negati 74.4 1.5 3.2E-05 47.3 1.2 46 270-315 371-417 (563)
229 PF04641 Rtf2: Rtf2 RING-finge 73.7 3.2 7E-05 43.5 3.6 35 268-302 34-69 (260)
230 KOG2259 Uncharacterized conser 73.6 7.4 0.00016 45.1 6.5 111 497-619 363-476 (823)
231 KOG4172 Predicted E3 ubiquitin 73.5 1 2.2E-05 34.9 -0.2 44 270-313 9-53 (62)
232 KOG1248 Uncharacterized conser 72.8 53 0.0011 40.9 13.7 215 392-619 665-900 (1176)
233 PF12460 MMS19_C: RNAPII trans 72.0 90 0.0019 35.0 14.9 128 508-638 272-414 (415)
234 PF08324 PUL: PUL domain; Int 72.0 13 0.00029 38.8 7.8 125 484-609 128-266 (268)
235 PF12717 Cnd1: non-SMC mitotic 71.9 20 0.00044 35.1 8.6 95 560-664 2-97 (178)
236 COG5175 MOT2 Transcriptional r 71.9 2.4 5.2E-05 44.9 2.0 50 267-317 14-67 (480)
237 COG5627 MMS21 DNA repair prote 71.4 1.8 3.9E-05 43.6 1.0 41 268-308 189-231 (275)
238 COG5096 Vesicle coat complex, 70.3 28 0.00061 41.7 10.6 128 392-536 66-195 (757)
239 PF06371 Drf_GBD: Diaphanous G 68.6 32 0.00069 33.5 9.3 110 548-658 66-186 (187)
240 PF12460 MMS19_C: RNAPII trans 68.5 81 0.0018 35.3 13.6 111 548-660 271-395 (415)
241 KOG4692 Predicted E3 ubiquitin 68.2 3 6.5E-05 44.4 1.9 45 267-312 421-465 (489)
242 KOG1058 Vesicle coat complex C 66.6 35 0.00077 40.4 10.0 122 518-646 271-412 (948)
243 PF05605 zf-Di19: Drought indu 65.8 6.3 0.00014 30.6 2.9 38 267-311 1-39 (54)
244 PF05918 API5: Apoptosis inhib 65.5 34 0.00075 39.7 9.8 92 550-655 61-158 (556)
245 KOG1943 Beta-tubulin folding c 65.1 3.2E+02 0.007 34.1 17.8 248 388-661 348-617 (1133)
246 KOG2274 Predicted importin 9 [ 63.8 66 0.0014 39.0 11.6 150 506-657 529-687 (1005)
247 PF14447 Prok-RING_4: Prokaryo 62.8 5.5 0.00012 31.2 1.9 43 271-316 10-52 (55)
248 KOG1820 Microtubule-associated 62.2 1E+02 0.0023 37.6 13.4 177 388-574 260-442 (815)
249 KOG4362 Transcriptional regula 62.1 3.3 7.2E-05 48.4 0.9 65 267-331 20-86 (684)
250 KOG1060 Vesicle coat complex A 61.0 3E+02 0.0066 33.3 16.1 203 388-618 42-247 (968)
251 KOG4151 Myosin assembly protei 59.8 50 0.0011 39.4 9.8 120 495-620 492-616 (748)
252 PF08324 PUL: PUL domain; Int 59.5 85 0.0018 32.6 11.0 135 518-653 121-268 (268)
253 KOG4653 Uncharacterized conser 59.2 1.1E+02 0.0023 37.2 12.3 208 441-658 741-963 (982)
254 PLN02189 cellulose synthase 58.9 6.9 0.00015 48.0 2.8 46 269-314 35-87 (1040)
255 cd03568 VHS_STAM VHS domain fa 58.0 41 0.00089 31.9 7.4 73 588-660 37-111 (144)
256 KOG2930 SCF ubiquitin ligase, 57.0 7.1 0.00015 34.4 1.8 27 285-312 80-106 (114)
257 KOG0298 DEAD box-containing he 56.6 3.3 7.2E-05 51.2 -0.3 45 265-310 1150-1195(1394)
258 cd03561 VHS VHS domain family; 56.6 43 0.00093 31.2 7.2 72 589-660 38-113 (133)
259 KOG1571 Predicted E3 ubiquitin 56.6 7.6 0.00017 41.9 2.4 46 264-313 301-346 (355)
260 PF14668 RICTOR_V: Rapamycin-i 56.2 48 0.001 27.7 6.5 66 563-630 4-70 (73)
261 PF14225 MOR2-PAG1_C: Cell mor 56.1 2.2E+02 0.0048 29.9 13.2 157 467-642 63-240 (262)
262 cd03569 VHS_Hrs_Vps27p VHS dom 55.7 41 0.00089 31.8 7.0 72 588-659 41-114 (142)
263 PF04821 TIMELESS: Timeless pr 55.6 46 0.001 35.0 8.1 30 505-536 43-72 (266)
264 KOG4653 Uncharacterized conser 55.0 1.2E+02 0.0026 36.8 11.7 164 485-659 746-918 (982)
265 PLN02195 cellulose synthase A 54.9 9.6 0.00021 46.5 3.1 45 270-314 8-59 (977)
266 COG5209 RCD1 Uncharacterized p 54.8 1E+02 0.0022 31.6 9.7 132 521-653 114-262 (315)
267 KOG1058 Vesicle coat complex C 54.1 85 0.0018 37.4 10.2 222 394-635 219-485 (948)
268 cd03567 VHS_GGA VHS domain fam 52.9 51 0.0011 31.1 7.1 71 589-659 39-116 (139)
269 PF05290 Baculo_IE-1: Baculovi 52.6 12 0.00026 34.7 2.6 50 267-316 79-134 (140)
270 PF05918 API5: Apoptosis inhib 52.3 39 0.00084 39.2 7.3 90 507-612 59-157 (556)
271 PF01347 Vitellogenin_N: Lipop 51.2 76 0.0016 37.4 9.9 156 466-645 393-573 (618)
272 PF12719 Cnd3: Nuclear condens 51.2 1.6E+02 0.0035 31.3 11.5 173 438-619 38-235 (298)
273 PF11701 UNC45-central: Myosin 49.6 28 0.0006 33.5 4.9 139 470-613 5-155 (157)
274 PF11701 UNC45-central: Myosin 48.9 36 0.00078 32.7 5.5 87 563-651 60-151 (157)
275 PF14446 Prok-RING_1: Prokaryo 48.4 13 0.00029 29.0 1.9 28 269-296 6-37 (54)
276 COG5240 SEC21 Vesicle coat com 48.3 5.1E+02 0.011 30.3 15.4 122 404-536 250-385 (898)
277 KOG4535 HEAT and armadillo rep 48.2 11 0.00025 42.1 2.1 93 561-655 499-599 (728)
278 PF07191 zinc-ribbons_6: zinc- 47.7 4.3 9.2E-05 33.4 -0.9 41 268-314 1-41 (70)
279 PF12717 Cnd1: non-SMC mitotic 47.4 1.3E+02 0.0028 29.4 9.3 89 395-495 2-92 (178)
280 KOG0414 Chromosome condensatio 47.2 97 0.0021 38.8 9.7 138 424-575 920-1064(1251)
281 PLN02436 cellulose synthase A 46.6 14 0.00031 45.5 2.8 46 269-314 37-89 (1094)
282 KOG0301 Phospholipase A2-activ 46.4 4.4E+02 0.0095 31.3 14.2 190 398-599 522-727 (745)
283 PRK14707 hypothetical protein; 46.1 6.9E+02 0.015 34.1 16.9 244 401-652 184-438 (2710)
284 KOG4185 Predicted E3 ubiquitin 45.8 17 0.00037 38.6 3.1 51 281-331 22-77 (296)
285 PF06685 DUF1186: Protein of u 45.8 2.1E+02 0.0047 29.8 10.9 117 504-634 70-201 (249)
286 COG5098 Chromosome condensatio 45.5 55 0.0012 38.6 7.0 106 551-661 302-418 (1128)
287 KOG1967 DNA repair/transcripti 45.4 1.3E+02 0.0028 36.8 10.1 182 469-653 816-1018(1030)
288 smart00531 TFIIE Transcription 44.7 13 0.00028 35.4 1.7 38 266-315 97-135 (147)
289 KOG1243 Protein kinase [Genera 44.5 6E+02 0.013 30.3 15.2 252 386-658 259-514 (690)
290 PLN02638 cellulose synthase A 43.9 16 0.00036 45.1 2.8 45 270-314 19-70 (1079)
291 smart00638 LPD_N Lipoprotein N 43.7 1.9E+02 0.0041 33.8 11.6 155 466-644 355-528 (574)
292 PRK11088 rrmA 23S rRNA methylt 43.6 12 0.00027 39.2 1.5 26 268-293 2-30 (272)
293 PF00790 VHS: VHS domain; Int 43.2 56 0.0012 30.6 5.8 72 589-660 43-119 (140)
294 cd03561 VHS VHS domain family; 42.8 1.1E+02 0.0023 28.4 7.6 68 388-456 44-112 (133)
295 KOG3665 ZYG-1-like serine/thre 42.5 2.2E+02 0.0047 34.4 11.8 89 530-619 494-589 (699)
296 KOG1820 Microtubule-associated 42.3 7.4E+02 0.016 30.5 17.7 169 439-617 265-443 (815)
297 PF10272 Tmpp129: Putative tra 42.2 18 0.0004 39.5 2.6 36 281-316 301-353 (358)
298 KOG1240 Protein kinase contain 42.0 3.1E+02 0.0067 34.8 12.7 214 394-618 436-726 (1431)
299 KOG1788 Uncharacterized conser 42.0 8.3E+02 0.018 30.9 16.5 79 540-619 900-984 (2799)
300 PF04499 SAPS: SIT4 phosphatas 41.9 1.1E+02 0.0024 35.0 8.9 112 547-660 20-150 (475)
301 PF08216 CTNNBL: Catenin-beta- 41.9 26 0.00056 31.6 3.0 41 484-524 64-104 (108)
302 cd03569 VHS_Hrs_Vps27p VHS dom 41.7 79 0.0017 29.9 6.5 67 388-457 48-115 (142)
303 COG5215 KAP95 Karyopherin (imp 40.9 6.6E+02 0.014 29.5 16.4 215 439-660 106-358 (858)
304 KOG2137 Protein kinase [Signal 40.5 1.7E+02 0.0036 34.8 10.0 167 466-644 347-522 (700)
305 PLN02915 cellulose synthase A 39.8 21 0.00045 44.1 2.8 46 269-314 16-68 (1044)
306 COG5220 TFB3 Cdk activating ki 39.5 6.6 0.00014 39.8 -1.2 47 267-313 9-63 (314)
307 PF10367 Vps39_2: Vacuolar sor 38.8 14 0.0003 32.6 0.9 35 263-297 73-109 (109)
308 KOG0414 Chromosome condensatio 38.5 1.7E+02 0.0037 36.7 10.0 138 508-660 920-1065(1251)
309 smart00288 VHS Domain present 38.5 98 0.0021 28.8 6.6 68 388-457 44-112 (133)
310 PF12726 SEN1_N: SEN1 N termin 38.5 3.6E+02 0.0078 32.7 13.1 122 508-630 442-568 (727)
311 KOG4718 Non-SMC (structural ma 37.9 18 0.0004 36.1 1.6 50 265-315 177-228 (235)
312 COG2176 PolC DNA polymerase II 37.2 27 0.00059 43.5 3.1 40 264-315 910-951 (1444)
313 smart00288 VHS Domain present 37.1 1E+02 0.0022 28.7 6.4 71 589-659 38-111 (133)
314 KOG4464 Signaling protein RIC- 37.0 3.1E+02 0.0067 30.7 10.7 251 391-654 107-427 (532)
315 KOG0211 Protein phosphatase 2A 37.0 4.3E+02 0.0093 32.2 13.0 234 418-661 271-510 (759)
316 PF06416 DUF1076: Protein of u 37.0 24 0.00053 31.7 2.1 51 266-317 38-94 (113)
317 PF12830 Nipped-B_C: Sister ch 35.5 1.4E+02 0.003 29.5 7.5 64 589-660 9-75 (187)
318 PF14353 CpXC: CpXC protein 35.3 21 0.00044 33.0 1.4 46 268-313 1-48 (128)
319 KOG0825 PHD Zn-finger protein 34.9 43 0.00093 39.7 4.1 60 260-334 88-159 (1134)
320 KOG0301 Phospholipase A2-activ 34.6 1.3E+02 0.0029 35.4 7.8 159 388-557 551-725 (745)
321 KOG3665 ZYG-1-like serine/thre 33.7 2.4E+02 0.0051 34.1 10.3 192 450-657 494-695 (699)
322 PF12530 DUF3730: Protein of u 33.3 4.7E+02 0.01 26.7 11.3 121 484-619 19-153 (234)
323 KOG2274 Predicted importin 9 [ 33.0 4.3E+02 0.0094 32.5 11.8 152 466-621 528-693 (1005)
324 COG1675 TFA1 Transcription ini 32.8 51 0.0011 32.4 3.8 54 265-334 110-164 (176)
325 PF08167 RIX1: rRNA processing 32.8 1.8E+02 0.004 28.0 7.7 106 469-575 26-143 (165)
326 PF06025 DUF913: Domain of Unk 32.0 4.7E+02 0.01 29.0 11.6 96 544-640 101-206 (379)
327 PF12719 Cnd3: Nuclear condens 31.9 6.4E+02 0.014 26.7 13.6 158 388-557 34-206 (298)
328 KOG1940 Zn-finger protein [Gen 31.9 29 0.00062 36.6 2.0 42 269-311 159-204 (276)
329 KOG3002 Zn finger protein [Gen 31.8 45 0.00098 35.7 3.5 60 265-331 45-105 (299)
330 cd00350 rubredoxin_like Rubred 30.9 38 0.00083 23.4 1.9 11 302-312 16-26 (33)
331 cd00730 rubredoxin Rubredoxin; 30.6 23 0.00049 27.3 0.7 13 264-276 30-42 (50)
332 PF14225 MOR2-PAG1_C: Cell mor 30.5 3.2E+02 0.0069 28.7 9.5 68 506-575 187-254 (262)
333 KOG2114 Vacuolar assembly/sort 29.9 27 0.0006 41.8 1.6 40 268-311 840-880 (933)
334 PF12906 RINGv: RING-variant d 29.4 52 0.0011 24.8 2.5 29 281-309 13-47 (47)
335 PF04064 DUF384: Domain of unk 29.4 1.8E+02 0.004 23.1 5.7 51 612-663 2-53 (58)
336 cd00197 VHS_ENTH_ANTH VHS, ENT 29.2 2.5E+02 0.0053 25.1 7.5 70 589-658 38-114 (115)
337 PF08216 CTNNBL: Catenin-beta- 28.9 60 0.0013 29.3 3.2 40 563-603 63-102 (108)
338 KOG0314 Predicted E3 ubiquitin 28.9 30 0.00064 38.9 1.6 70 262-333 213-286 (448)
339 cd03572 ENTH_epsin_related ENT 28.9 1.8E+02 0.004 26.8 6.5 70 590-659 40-119 (122)
340 PLN02400 cellulose synthase 28.5 33 0.00071 42.6 2.0 46 269-314 37-89 (1085)
341 COG5231 VMA13 Vacuolar H+-ATPa 28.2 2E+02 0.0043 31.1 7.3 123 520-642 162-292 (432)
342 PF00301 Rubredoxin: Rubredoxi 28.0 25 0.00054 26.7 0.6 13 264-276 30-42 (47)
343 PHA02862 5L protein; Provision 27.5 40 0.00087 31.8 1.9 56 271-333 5-66 (156)
344 KOG0567 HEAT repeat-containing 26.9 1.9E+02 0.004 30.5 6.7 87 507-614 187-277 (289)
345 PF10915 DUF2709: Protein of u 26.6 46 0.00099 32.8 2.2 36 268-312 87-122 (238)
346 KOG0915 Uncharacterized conser 26.6 6.4E+02 0.014 33.0 12.2 206 402-621 942-1164(1702)
347 KOG1814 Predicted E3 ubiquitin 26.5 61 0.0013 35.8 3.3 59 267-329 183-251 (445)
348 PRK10869 recombination and rep 26.4 1.1E+03 0.024 27.6 20.1 149 31-199 183-341 (553)
349 COG3813 Uncharacterized protei 26.3 61 0.0013 26.8 2.5 41 281-324 22-62 (84)
350 PF10363 DUF2435: Protein of u 26.0 1.8E+02 0.004 25.3 5.7 66 554-621 9-76 (92)
351 COG1592 Rubrerythrin [Energy p 26.0 45 0.00097 32.5 2.0 25 268-312 134-158 (166)
352 PRK12495 hypothetical protein; 26.0 92 0.002 31.6 4.2 30 182-215 8-37 (226)
353 PHA02825 LAP/PHD finger-like p 25.8 74 0.0016 30.6 3.4 47 268-315 8-60 (162)
354 KOG1240 Protein kinase contain 25.4 1.6E+03 0.034 29.1 15.1 173 482-661 439-687 (1431)
355 PF14726 RTTN_N: Rotatin, an a 25.4 4.2E+02 0.009 23.5 7.8 74 581-655 23-96 (98)
356 KOG2032 Uncharacterized conser 25.3 3.4E+02 0.0074 31.0 8.8 152 421-574 252-414 (533)
357 PF07278 DUF1441: Protein of u 25.3 2.6E+02 0.0057 26.8 7.0 46 81-126 88-139 (152)
358 PF05883 Baculo_RING: Baculovi 25.1 43 0.00093 31.3 1.6 43 268-311 26-77 (134)
359 PF11791 Aconitase_B_N: Aconit 24.6 2.4E+02 0.0053 27.0 6.5 27 509-535 96-122 (154)
360 PF14663 RasGEF_N_2: Rapamycin 24.5 1.6E+02 0.0034 26.7 5.2 39 588-627 8-46 (115)
361 KOG2933 Uncharacterized conser 24.4 1.5E+02 0.0032 31.9 5.6 132 387-533 94-231 (334)
362 KOG4265 Predicted E3 ubiquitin 24.2 44 0.00096 36.2 1.8 46 269-315 291-337 (349)
363 KOG4535 HEAT and armadillo rep 24.0 68 0.0015 36.3 3.2 154 466-619 431-605 (728)
364 TIGR00634 recN DNA repair prot 23.7 1.2E+03 0.026 27.2 18.8 145 31-195 187-342 (563)
365 PF06685 DUF1186: Protein of u 23.6 6.3E+02 0.014 26.4 10.0 70 546-627 71-152 (249)
366 KOG2462 C2H2-type Zn-finger pr 23.5 44 0.00095 35.0 1.5 47 266-316 159-228 (279)
367 PF14569 zf-UDP: Zinc-binding 23.4 56 0.0012 27.5 1.8 46 270-315 11-63 (80)
368 PRK14707 hypothetical protein; 23.4 2.1E+03 0.046 29.9 16.9 231 421-659 245-488 (2710)
369 PF08271 TF_Zn_Ribbon: TFIIB z 23.1 23 0.0005 26.1 -0.4 17 302-318 18-34 (43)
370 KOG2956 CLIP-associating prote 23.0 1.2E+03 0.025 26.8 12.6 167 440-616 300-476 (516)
371 KOG2956 CLIP-associating prote 23.0 8E+02 0.017 28.1 11.0 141 509-657 331-475 (516)
372 PF07539 DRIM: Down-regulated 22.8 3.9E+02 0.0084 25.2 7.7 84 505-598 15-98 (141)
373 TIGR00373 conserved hypothetic 22.7 1E+02 0.0022 29.8 3.8 35 266-316 107-141 (158)
374 PF11865 DUF3385: Domain of un 22.5 2.6E+02 0.0056 26.9 6.6 137 468-614 10-154 (160)
375 KOG2137 Protein kinase [Signal 22.3 4.2E+02 0.0091 31.7 9.2 147 424-575 386-539 (700)
376 PRK06266 transcription initiat 22.3 1.1E+02 0.0024 30.1 4.1 55 266-336 115-170 (178)
377 cd00729 rubredoxin_SM Rubredox 22.3 65 0.0014 22.6 1.7 9 304-312 19-27 (34)
378 PF12530 DUF3730: Protein of u 22.2 8.5E+02 0.018 24.8 14.6 124 393-535 13-150 (234)
379 PF14357 DUF4404: Domain of un 21.9 5.1E+02 0.011 22.2 7.7 74 93-171 3-79 (85)
380 PF06676 DUF1178: Protein of u 21.8 78 0.0017 30.3 2.7 23 285-312 9-41 (148)
381 KOG4275 Predicted E3 ubiquitin 21.8 29 0.00063 36.4 -0.1 39 267-312 299-340 (350)
382 KOG1967 DNA repair/transcripti 21.7 4.1E+02 0.009 32.7 9.1 141 423-567 867-1016(1030)
383 KOG2041 WD40 repeat protein [G 21.4 78 0.0017 37.4 3.1 25 263-289 1126-1150(1189)
384 KOG3579 Predicted E3 ubiquitin 21.3 66 0.0014 33.7 2.2 43 267-309 267-317 (352)
385 KOG1243 Protein kinase [Genera 20.9 3.4E+02 0.0074 32.3 8.1 106 506-617 292-398 (690)
386 PRK04023 DNA polymerase II lar 20.9 93 0.002 38.4 3.7 67 267-337 625-696 (1121)
387 KOG3899 Uncharacterized conser 20.8 50 0.0011 34.6 1.3 27 289-315 328-366 (381)
388 PF00096 zf-C2H2: Zinc finger, 20.8 34 0.00074 21.0 0.1 13 269-281 1-13 (23)
389 cd03568 VHS_STAM VHS domain fa 20.8 2.3E+02 0.005 26.8 5.8 85 388-478 44-129 (144)
390 PF12231 Rif1_N: Rap1-interact 20.3 4.2E+02 0.009 29.2 8.6 178 394-574 6-203 (372)
391 COG5218 YCG1 Chromosome conden 20.2 1.5E+03 0.032 26.9 13.4 55 560-615 105-159 (885)
392 PRK00420 hypothetical protein; 20.2 66 0.0014 29.2 1.8 13 302-314 39-51 (112)
393 PF14205 Cys_rich_KTR: Cystein 20.2 72 0.0016 25.0 1.7 10 303-312 28-37 (55)
394 KOG4739 Uncharacterized protei 20.1 54 0.0012 33.7 1.4 40 279-321 15-55 (233)
395 KOG2025 Chromosome condensatio 20.1 1.3E+03 0.028 28.0 12.3 138 387-533 91-291 (892)
396 COG5242 TFB4 RNA polymerase II 20.0 51 0.0011 33.4 1.1 17 266-282 258-274 (296)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=5.9e-26 Score=280.13 Aligned_cols=270 Identities=18% Similarity=0.171 Sum_probs=237.7
Q ss_pred cc-hhhcCC--CHHHHHHHHHHHHHHHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCC
Q 036199 386 DL-SRLTEL--NWDCQCKVIEDYETRLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSG 461 (710)
Q Consensus 386 ~L-~~L~s~--~~e~q~~Al~~L~~Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k 461 (710)
+| ++|+++ +.+.|..|+.+|+.+++.++++|..|++ .|+||.|+.+|.+ ++..+|++|+.+|.+++.++.+|
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCHHHH
Confidence 44 788876 7788999999999999999999999986 8999999999987 68999999999999999988888
Q ss_pred CccccccchHHHHHHhccCcH--HHHHHHHHHHhccC---chhhHHHh-hhCcHHHHHHhhcCCC---HHHHHHHHHHHH
Q 036199 462 IPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSY---AYFISKIV-ASGALASILNMLDSPN---GKFQELAIKILH 532 (710)
Q Consensus 462 ~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~---~~nk~~I~-~~GaI~~LV~LL~~~~---~~~~~~A~~aL~ 532 (710)
..++..|+||+|+.+|++++. +++|+++|++|+.+ +.++..|+ ..|+||+|+.+|++++ ...++.|+.+|+
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 888899999999999999875 47999999999976 55676655 6999999999999885 235677889999
Q ss_pred HhccCcccccc-cccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcC-CHHHHHH
Q 036199 533 NLSSDVDIQSH-IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIG-SEEDQEH 607 (710)
Q Consensus 533 nLs~~~en~~~-iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~ 607 (710)
|||.+++|+.. ++++|+||.|+.+|.+ +..+..|+.+|.+++.+ ++++..+++ .|+||.|+++|+++ ++..|++
T Consensus 173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHH
Confidence 99999999865 5899999999999965 46799999999888875 779999998 89999999999875 5689999
Q ss_pred HHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC---------HHHHHHHHHHHHHhhhc
Q 036199 608 AVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN---------DKAKVSALELRRLLRDV 660 (710)
Q Consensus 608 A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt---------~~~k~kA~~LL~~l~~~ 660 (710)
|+++|.+||.++++++..+++.|++|+|+.++...+ ...++.|.+.|..+...
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999987544 33589999999987753
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.4e-25 Score=224.71 Aligned_cols=268 Identities=20% Similarity=0.271 Sum_probs=244.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccc
Q 036199 390 LTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDL 469 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ga 469 (710)
..+...++||.++..|..|+-. +++|..|+..|++.++.++-++ .|..+|++++.+|+|+.+..+||...+..|+
T Consensus 135 mmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks----kdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 135 MMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS----KDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred hcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc----chhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 3345678899999999999987 7799999999999999996655 7899999999999999888888999999999
Q ss_pred hHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhC--cHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 470 FSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASG--ALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 470 I~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~G--aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
+|.||.+|++++. +..+..++.+++.+..+|..++++| .||.||++++++++.++-.|.-||.||+.+.+....++
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 9999999999885 4799999999999999999999877 99999999999999999999999999999999999999
Q ss_pred cccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCC-HHHHHHHHHHHHHHhcCChHH
Q 036199 546 PSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS-EEDQEHAVAILLCLCSQRDQY 622 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s-~~~ke~A~~aL~~Lc~~~~~~ 622 (710)
++|++|.|+++|.++ .+.-..+..++|++-++-+..-|++ .|.+.+||++|+.++ .+.|-+|+.+|++|+.....+
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 999999999999764 4566778899999999999989998 899999999999864 558999999999999988889
Q ss_pred HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCC
Q 036199 623 CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 623 ~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
+..+.+.|++|.|.+|+.+|.-..+..-...+..|.-.+..
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999998888888887766544
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.91 E-value=2.2e-23 Score=257.51 Aligned_cols=272 Identities=18% Similarity=0.174 Sum_probs=235.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCC-Ccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSG-IPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k-~~i~~ 466 (710)
..|.+++.+.|..|++.|+.+++.+++++..|++.|+||.|+++|.+ ++.++|++|+++|.|++.++.+. ..+.+
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s----~~~~iqeeAawAL~NLa~~~~qir~iV~~ 528 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKAKEDSATVLWNLCCHSEDIRACVES 528 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999987 78999999999999998766444 44447
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhh-------------------------------------HH-Hhhh
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFI-------------------------------------SK-IVAS 506 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk-------------------------------------~~-I~~~ 506 (710)
.|+|++|+++|++++.+ +.|+++|.+|+...++. .. +...
T Consensus 529 aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ 608 (2102)
T PLN03200 529 AGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAN 608 (2102)
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcc
Confidence 89999999999998764 69999999996322211 11 1136
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc--CcchHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN--TEHARV 581 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~--~~e~r~ 581 (710)
|+|+.|+++|.++++..++.|+++|.|++. +++++..++.+|+||+|+.+|.+ .+....|+++|.+|+. .++.+.
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKV 688 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHH
Confidence 899999999999999999999999999997 56778889999999999999965 4678999999999996 445567
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.+++ .|+|++|+++|...+...++.|+.+|.+++... +.+..+.++|++++|+.++++|+++.|+.|.+.|..|.++.
T Consensus 689 ~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 689 SYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 7777 899999999999999999999999999999998 57788889999999999999999999999999888777666
Q ss_pred CCcc
Q 036199 662 YSVE 665 (710)
Q Consensus 662 ~~~~ 665 (710)
.-++
T Consensus 767 ~~~~ 770 (2102)
T PLN03200 767 PVDD 770 (2102)
T ss_pred ChhH
Confidence 5443
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.5e-22 Score=204.11 Aligned_cols=261 Identities=20% Similarity=0.245 Sum_probs=234.8
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc--ch
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED--LF 470 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g--aI 470 (710)
.+..+|.-+.+.|..+. ...+||..++..|++|.||.+|++ +|..+|..+++++.|+.-+..+|...++.| .+
T Consensus 179 kdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv 253 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLV 253 (550)
T ss_pred chhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchH
Confidence 35677888998888776 457799999999999999999998 899999999999999988777777777766 99
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccccc
Q 036199 471 SLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE 548 (710)
Q Consensus 471 ~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG 548 (710)
|.||++.++++.+ -.|.-+|.+|+.+.++...|+++|++|.+|++|+++.....-....++.|++.++-|-..|+++|
T Consensus 254 ~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dag 333 (550)
T KOG4224|consen 254 PALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAG 333 (550)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceeccc
Confidence 9999999999875 37888899999999999999999999999999998887777788899999999999999999999
Q ss_pred chhchHHhhc---CchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHH
Q 036199 549 FLPKLVPFLK---DATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624 (710)
Q Consensus 549 ~V~~Lv~lL~---~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~ 624 (710)
.+.+||++|. +++++-.|..+|+|||. .+.++..|.+ .|+||.+.+++..+.-..|+...+++..|+.++ ..+.
T Consensus 334 fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~ 411 (550)
T KOG4224|consen 334 FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKE 411 (550)
T ss_pred chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHH
Confidence 9999999994 35689999999999998 7888999998 899999999999999999999999999998887 6678
Q ss_pred HHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 625 LVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 625 ~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+.+.|++|.|+.+..+.+..++.+|...|-.|...
T Consensus 412 ~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 412 ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 899999999999999999999999999988877654
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.7e-21 Score=210.17 Aligned_cols=264 Identities=15% Similarity=0.142 Sum_probs=229.9
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccccccch
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLF 470 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI 470 (710)
..++..|.+|+++|...+.+..+.-..+++.|++|.++.+|.+ .+..+++.|+.+|.|++.+. ..|..+++.|++
T Consensus 121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l 196 (514)
T KOG0166|consen 121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSPDCRDYVLSCGAL 196 (514)
T ss_pred CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCChHHHHHHHhhcch
Confidence 3457889999999999999999999999999999999999988 78999999999999998765 447777899999
Q ss_pred HHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccc
Q 036199 471 SLLASFLHSAAA---TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIA 545 (710)
Q Consensus 471 ~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv 545 (710)
++|..++..... ..+++|+|.|||....--..+. -..++|.|..+|.+.|+++..+|++||.+|+..+ +....++
T Consensus 197 ~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi 276 (514)
T KOG0166|consen 197 DPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI 276 (514)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999999987764 3799999999997764344433 3678999999999999999999999999999654 5556678
Q ss_pred cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH
Q 036199 546 PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
++|++|.|+++|.. +.++..|+.++.|++.+.+.. ..+.. .|+++.|..++. +.....++.|+|++.|++.++.+
T Consensus 277 ~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 277 DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE 355 (514)
T ss_pred HccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH
Confidence 99999999999954 457888999999999866555 45555 899999999998 45666899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 622 YCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+.+.++++|++|.|+.++.++..+.|+.|.|.+.++...
T Consensus 356 qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999976543
No 6
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.86 E-value=1.5e-22 Score=169.12 Aligned_cols=72 Identities=42% Similarity=0.788 Sum_probs=63.8
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++...+|+||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999988999999999999999999999999999999885
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.4e-18 Score=186.98 Aligned_cols=268 Identities=17% Similarity=0.230 Sum_probs=222.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccc-hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVS-HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r-~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~ 465 (710)
..+.+.+...|..+...+|.+........ ..+...|.|+.+|.+|... .++..|..|+++|.|+++. ...-..++
T Consensus 73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchhhccccc
Confidence 56667788889999999987775433322 3334459999999999752 5689999999999999763 34445567
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSS-YAYFISKIVASGALASILNMLDSPNG-KFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~~-~~~~~A~~aL~nLs~~~en~ 541 (710)
+.|++|.++.+|.+++. .+.|+|+|.|++. .+..|..+...|++++|+.++...+. .....++++|.|||.+..--
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999886 4899999999995 56788888899999999999987765 78899999999999877544
Q ss_pred cccc-cccchhchHHhh--cCchHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 542 SHIA-PSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 542 ~~iv-~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
..+. -+.++|.|..+| .|+++...|+++|+.|+.++..+ ..+++ .|.++.||.+|.+.++.++-.|+.++-|+..
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~-~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID-AGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-ccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 4443 378899999999 45778999999999999865544 55566 8999999999999999999999999999999
Q ss_pred CChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhh
Q 036199 618 QRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 618 ~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~~l~~ 659 (710)
+++...+.++..|++|.|..++. +.....|+.|.|.+..+..
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 99999999999999999999987 5566688889999988765
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.78 E-value=1.5e-18 Score=177.49 Aligned_cols=259 Identities=15% Similarity=0.104 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccccccchHHHHH
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLFSLLAS 475 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI~~LV~ 475 (710)
.|.+|+++|...+.+..+....+++.|++|.++.+|.+ ++..+++.++++|.|++.++ ..|..+++.|++++++.
T Consensus 131 lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ 206 (526)
T COG5064 131 LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS----TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG 206 (526)
T ss_pred HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC----chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH
Confidence 46799999999999888877888999999999999988 67889999999999998765 44677789999999999
Q ss_pred HhccCcH----HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-cccccccc
Q 036199 476 FLHSAAA----TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEF 549 (710)
Q Consensus 476 lL~s~~~----~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv~aG~ 549 (710)
+|.+... -.++.|+|.||+....-...-. -+.++|.|.+|+.+.|+++..+|++||..|+..+..+ ..+++.|.
T Consensus 207 ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~ 286 (526)
T COG5064 207 LLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI 286 (526)
T ss_pred HHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Confidence 9986654 2699999999996433222221 1457999999999999999999999999999876555 56678999
Q ss_pred hhchHHhhcCc--hHHHHHHHHHHHHhcCcchHH-HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 036199 550 LPKLVPFLKDA--TLAVSCLVILKNMCNTEHARV-CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLV 626 (710)
Q Consensus 550 V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~-~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v 626 (710)
.+.|+.+|..+ .++..|+....|+....+... .+++ .|+++.+-.+|.+.....+..|||.+.++..++.+..+.+
T Consensus 287 ~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqav 365 (526)
T COG5064 287 PGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV 365 (526)
T ss_pred cHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHH
Confidence 99999999765 568899999999998666554 4455 8999999999999888999999999999999999999999
Q ss_pred HhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 627 MNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 627 ~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++...+|+|+.++....-+.|+.|.|.+..+...
T Consensus 366 id~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999998876654
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=1e-17 Score=193.17 Aligned_cols=216 Identities=26% Similarity=0.388 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDS 518 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~ 518 (710)
....+.+..+|+|++.+..++..+.+.|+|+.||++|++++.. ..+++.|.+||...+||..+++.|+|++|++++.+
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 4566788889999999998888888999999999999988764 47899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh
Q 036199 519 PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 519 ~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
++.+....|+++|+|||.+++++..|++.|+||.|+.+|.+++....|+.+|.+||..+++|..+.. .++||.|+++|.
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll 421 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLL 421 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998889999999999999999999988 589999999877
Q ss_pred c-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 599 I-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 599 ~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
. ++++.+..+++++.||+.+. .+.+.+.+.|+++.|+.......+. ...++++.++.|.
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD 481 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence 6 45556667888888988887 8889999999999999887665432 2334555555553
No 10
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.72 E-value=7.2e-17 Score=165.36 Aligned_cols=265 Identities=16% Similarity=0.182 Sum_probs=217.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHcc-CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-CCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEH-DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-GIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~-~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~-k~~i~ 465 (710)
..|-+.+.+.|.+|+.+.|.++.. ..--...+...|.+|.+|+||.+. ...-.|-.|+++|.|+++.... ...++
T Consensus 78 ~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt~QTkvVv 154 (526)
T COG5064 78 QQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTTQQTKVVV 154 (526)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhccCcccceEEEE
Confidence 456677889999999999876643 333345678899999999999642 4456788999999999775433 33456
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCH--HHHHHHHHHHHHhccCcc-
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNG--KFQELAIKILHNLSSDVD- 539 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~--~~~~~A~~aL~nLs~~~e- 539 (710)
+.|++|.++++|.++.. .+.|+|+|.|++.+ +..|..+.+.|++.+|+.+|.+... ....++.++|.|||....
T Consensus 155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred eCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 99999999999998875 47999999999964 5677888899999999999976654 778999999999996422
Q ss_pred --cccccccccchhchHHhh--cCchHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 540 --IQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 540 --n~~~iv~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
+-..| .-++|.|.+++ .|+++...|++++.-|+..+..+ .++.+ .|+.+.||++|.+.+..++..|+...-+
T Consensus 235 ~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld-~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 235 PPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHh-cCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 22222 35789999998 46788999999999999976555 55566 8999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 615 Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+-.++....+.++..|+++.+..|+.+...+.|+.|.|.+..+.
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence 99999888999999999999999999999999999999877553
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.67 E-value=4.2e-17 Score=132.45 Aligned_cols=63 Identities=46% Similarity=0.802 Sum_probs=60.4
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 67899999999999999999999999998
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.67 E-value=2.9e-15 Score=173.07 Aligned_cols=269 Identities=17% Similarity=0.181 Sum_probs=216.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+.+...-++.-|+.|+-. .+|+..|++.|+|+.|+++|.+ .+.+.+..++.+|+|++.+...|..++..
T Consensus 297 ~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 297 KCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 566777888888888889888765 4589999999999999999987 67889999999999999999999999999
Q ss_pred cchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCccccccccc
Q 036199 468 DLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDS-PNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
|.||.|+.+|.++.....+.++|.+||.++++|..+...++||.|+++|-+ +++++...++.++.||+.++.|...|.+
T Consensus 372 GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~ 451 (708)
T PF05804_consen 372 GLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE 451 (708)
T ss_pred CCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh
Confidence 999999999998877778999999999999999999999999999998754 4556666778888888888888877777
Q ss_pred ccchhchHHhh-------------------------------------c---CchHHHHHHHHHHHH-------------
Q 036199 547 SEFLPKLVPFL-------------------------------------K---DATLAVSCLVILKNM------------- 573 (710)
Q Consensus 547 aG~V~~Lv~lL-------------------------------------~---~~~~~~~al~iL~nL------------- 573 (710)
.|+++.|++.. . ++++.-+|+++|+||
T Consensus 452 g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~ 531 (708)
T PF05804_consen 452 GNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQE 531 (708)
T ss_pred cCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHh
Confidence 77776665432 0 011233344444444
Q ss_pred -------------------------------hcCcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCCh
Q 036199 574 -------------------------------CNTEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 574 -------------------------------a~~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
|..++....++. .|.++.|+++|.. .+.+..-..+.+++.+-.+.+
T Consensus 532 ~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~-sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 532 YNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK-SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh-CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 444455555566 6889999999986 477888888999999999984
Q ss_pred HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 621 QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 621 ~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
.....+.+.+++..|++++.+.+...++.|...|-++.++.+
T Consensus 611 tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 611 TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 444444567899999999999999999999999998876643
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.54 E-value=6.2e-14 Score=163.79 Aligned_cols=264 Identities=16% Similarity=0.159 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc--------cCCCHHHHHHHHHHHHHH-hccCCCCCccc-ccc
Q 036199 399 CKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR--------DLHDSRAQRIGCRLLLAF-VSKNRSGIPYL-NED 468 (710)
Q Consensus 399 ~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~--------~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~-~~g 468 (710)
|.|+..|-.+. .++++|..|-+.|++.++-+||.-++ +......++.|.++|.|| +.+..||..+- ..|
T Consensus 316 caA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 46666665554 56889999999999999999885431 112346789999999999 66777776654 579
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhc-cCchh-hHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALS-SYAYF-ISKIVASGALASILNML-DSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~n-k~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
.+..||..|.+... .+--+.+|+||+ .-+.| |..+.+.|-+..|+..- ........+..+.|||||+. +.+||.
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 99999999987764 367889999999 44444 44555789999998854 55666788999999999996 689999
Q ss_pred cccc-ccchhchHHhhcC------chHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 543 HIAP-SEFLPKLVPFLKD------ATLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 543 ~iv~-aG~V~~Lv~lL~~------~~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
.|.. -|++..||.+|.- -.+.+.+-+||+|.++ ++..|+.+.+ ..|+..|+..|++.+-.+.-|||++
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEeecchhh
Confidence 9987 7999999999942 2468999999999876 6777777777 7999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCCc
Q 036199 612 LLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 612 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~~ 664 (710)
||||...+++.++++.+.|+|+.|..|..+.+...-+-+.+.|+.|-.++...
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 99999999999999999999999999999999888888888888777777443
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=7.6e-13 Score=136.14 Aligned_cols=263 Identities=14% Similarity=0.211 Sum_probs=216.4
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC--------
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI-------- 462 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~-------- 462 (710)
+..+.+.-+..+.-++..+-.++.||..+.+.++++.+...|... +-.++.+.+..++..+..++..|.
T Consensus 157 ~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~h 233 (461)
T KOG4199|consen 157 KVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGH 233 (461)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHH
Confidence 344566667777788888888999999999999999999877652 233788888999998866554433
Q ss_pred --ccccccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCC-H---HHHHHHHHHHHH
Q 036199 463 --PYLNEDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSPN-G---KFQELAIKILHN 533 (710)
Q Consensus 463 --~i~~~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~-~---~~~~~A~~aL~n 533 (710)
.|+..|++..|++.|.-+. .-..+..+|..|+..++.+..|.++|++..|++++.+.+ . ...+.++..|..
T Consensus 234 Ar~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLra 313 (461)
T KOG4199|consen 234 ARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRA 313 (461)
T ss_pred HHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Confidence 3456788889999887443 346889999999999999999999999999999997643 2 345778889999
Q ss_pred hccCcccccccccccchhchHHhh----cCchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhc--CCHHHHH
Q 036199 534 LSSDVDIQSHIAPSEFLPKLVPFL----KDATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEI--GSEEDQE 606 (710)
Q Consensus 534 Ls~~~en~~~iv~aG~V~~Lv~lL----~~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke 606 (710)
|+.++++|..||+.|+.+.++.++ ++|.+...++.++..||- .|+.-..+++ .|+-...|+.|+. .-...|.
T Consensus 314 lAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQr 392 (461)
T KOG4199|consen 314 LAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQR 392 (461)
T ss_pred HhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHH
Confidence 999999999999999999999887 568889999999999996 7888888888 6888888888885 3567799
Q ss_pred HHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 607 ~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+|++.+.|+..++.+++..++..|+ +.|+......++....-|...|+-|-
T Consensus 393 nac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 393 NACNMIRNIVVRSAENRTILLANGI-EKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 9999999999999999999999986 77877777777777777888888654
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.1e-12 Score=132.88 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=214.2
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHH-hccCCCCCccccccchH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFS 471 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~ 471 (710)
++...-.++++.|-.+....++ +...-++..++.+|.... .+.++-......+..- ..++.||..+++.++++
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 4555667889988888766555 456678889999997532 4455656666666665 45788899999999999
Q ss_pred HHHHHhccCcH---HHHHHHHHHHhccCchhh----------HHHhhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccC
Q 036199 472 LLASFLHSAAA---TEETLAILVALSSYAYFI----------SKIVASGALASILNMLDSP-NGKFQELAIKILHNLSSD 537 (710)
Q Consensus 472 ~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk----------~~I~~~GaI~~LV~LL~~~-~~~~~~~A~~aL~nLs~~ 537 (710)
.+...|..... -+++.++++.|..+++.| ..|+..|++..|++.|..+ +|.....+..+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99988875443 268889999888766644 4566678899999999755 688999999999999999
Q ss_pred cccccccccccchhchHHhhcCc------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAV 609 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~ 609 (710)
++.+..++++|++..|+.+|.|. .+...|+..|+.||.++..+..|++ .||.+.++.++.. .+|.+-+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999652 3578899999999999999999999 8999999998764 7999999999
Q ss_pred HHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCH--HHHHHHHHHHHHhhhc
Q 036199 610 AILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGND--KAKVSALELRRLLRDV 660 (710)
Q Consensus 610 ~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~--~~k~kA~~LL~~l~~~ 660 (710)
.++.-||-+.+++...+++.|+-...++-++.... .++++|.++++.+-.+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888877666544 4679999999987654
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.46 E-value=5.7e-13 Score=151.05 Aligned_cols=269 Identities=19% Similarity=0.177 Sum_probs=210.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc---cCCCCCcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS---KNRSGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~---~~~~k~~i 464 (710)
..|.+.+...|..|+.-|..++..+.+.+..+.+-|+|+.||.+|.+ ...++|++|+.+|.|++- ++.||..|
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~----~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH----RNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC----CcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 56777788899999999999999999999999999999999999988 789999999999999953 34689999
Q ss_pred ccccchHHHHHHhcc-Cc--HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc---C----C-------CHHHHHHH
Q 036199 465 LNEDLFSLLASFLHS-AA--ATEETLAILVALSSYAYFISKIVASGALASILNMLD---S----P-------NGKFQELA 527 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s-~~--~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~---~----~-------~~~~~~~A 527 (710)
.+.++|+.++++|+. ++ ..+..+++|+||+.+|..|..|... +++.|-+-+- + + +..+..++
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~ 394 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV 394 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehh
Confidence 999999999999995 33 3479999999999998888888754 3555554331 1 1 24567899
Q ss_pred HHHHHHhcc-Cccccccccc-ccchhchHHhhc--------CchHHHHHHHHHHHHhcCcc-----hH-HHHHh------
Q 036199 528 IKILHNLSS-DVDIQSHIAP-SEFLPKLVPFLK--------DATLAVSCLVILKNMCNTEH-----AR-VCVVE------ 585 (710)
Q Consensus 528 ~~aL~nLs~-~~en~~~iv~-aG~V~~Lv~lL~--------~~~~~~~al~iL~nLa~~~e-----~r-~~i~~------ 585 (710)
+++|.|++. ..+.+.+|-+ .|.|..|+..+. |...++.|+.+|+||+-.-+ .. ..+..
T Consensus 395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~ 474 (717)
T KOG1048|consen 395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPG 474 (717)
T ss_pred hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccccc
Confidence 999999998 7888899987 899999999883 34569999999999986221 00 00000
Q ss_pred -----------------------------------------hcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCCh---
Q 036199 586 -----------------------------------------TSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRD--- 620 (710)
Q Consensus 586 -----------------------------------------~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~--- 620 (710)
++..|..-..+|. ..++.+.|.++++|-||+....
T Consensus 475 ~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~ 554 (717)
T KOG1048|consen 475 VGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS 554 (717)
T ss_pred CCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence 0001222122333 4688899999999999998772
Q ss_pred -HHHHHH-HhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 621 -QYCKLV-MNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 621 -~~~~~v-~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
..+..+ .++-+.|+|++|+.++++++.+.+..+|++|+...
T Consensus 555 ~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 555 EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 234444 78899999999999999999999999999887543
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.35 E-value=2.9e-11 Score=125.11 Aligned_cols=195 Identities=19% Similarity=0.297 Sum_probs=167.7
Q ss_pred cccccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc
Q 036199 464 YLNEDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en 540 (710)
+.+.+-++.|+.+|+... .++.|..++.+.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+.+.+|
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 368899999999998543 25789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhchHHhhc----CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 541 QSHIAPSEFLPKLVPFLK----DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 541 ~~~iv~aG~V~~Lv~lL~----~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
+..+- .+|+.+.+.+. +..++..++.+|.||+..++.+..+.. .|+.++.+|..|+...|.+++.+|++|+
T Consensus 88 ~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 98773 36777777652 346788999999999998888777754 6999999999999999999999999999
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHhhhccCCc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~LL~~l~~~~~~~ 664 (710)
.++ .....++.++++..++.|.... +...-..+..+...+.++...+
T Consensus 163 ~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 163 ENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred cCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 988 6778888888999999998776 4556788888888887665544
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.26 E-value=3.9e-11 Score=136.34 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=171.4
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc---Cccccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS---DVDIQS 542 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~---~~en~~ 542 (710)
-+|..+.+|.+... +.+|++-|..+| .+.+.|..+-+.|+|+.||.+|++.+.+++..|++||.||.. +++|+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 46778888887765 358888888998 456778888889999999999999999999999999999996 346899
Q ss_pred ccccccchhchHHhhc---CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-C-------------CHHHH
Q 036199 543 HIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-G-------------SEEDQ 605 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~-------------s~~~k 605 (710)
.|.+.|+|+.|+.+|. |.++.+...++|+||++++.-+..|+.+ ++..|...+-. - +...-
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999999995 6789999999999999999999888873 67777775532 1 13455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHh-CCchHHHHHHhh------cCCHHHHHHHHHHHHHhhhccCCccccCCCCCccCCC
Q 036199 606 EHAVAILLCLCSQRDQYCKLVMN-EGVIPSLVKISV------YGNDKAKVSALELRRLLRDVAYSVEQQCFGSEIDTSK 677 (710)
Q Consensus 606 e~A~~aL~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~~------~gt~~~k~kA~~LL~~l~~~~~~~~~~~~~~~~~~~~ 677 (710)
.++.++|.|+++.+.+.++.+.+ .|.|..|+...+ ..+.+.-++|..+|++|+..-+.+.++.-.+.+....
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 79999999999977677776665 588999987754 4678889999999999999999988877777765444
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.24 E-value=1.6e-10 Score=119.62 Aligned_cols=227 Identities=18% Similarity=0.172 Sum_probs=179.3
Q ss_pred cccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccC
Q 036199 419 LSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY 496 (710)
Q Consensus 419 I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~ 496 (710)
+.+++.++.|+.+|+.. .|+.+|+.+..++.+.+....++..+.+.|+++.+..+|.+++.. +.|+.+|.||+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 35677889999999863 689999999999999988888899999999999999999998864 6899999999999
Q ss_pred chhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHH
Q 036199 497 AYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKN 572 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~n 572 (710)
.+|+..|-. .|+.+.+...+. +..++..++++|.||+..++++..+. ++|+.|+.+|.. ..++..++.+|.|
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999998854 577777765443 67899999999999998888877664 589999999954 5678899999999
Q ss_pred HhcCcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHhcCChHH-HHHHHhCCchHHHHHHhhcCCHHHHHHH
Q 036199 573 MCNTEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRDQY-CKLVMNEGVIPSLVKISVYGNDKAKVSA 650 (710)
Q Consensus 573 La~~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~~~~~~-~~~v~~~G~v~~Lv~L~~~gt~~~k~kA 650 (710)
|+.++.....+.. +++++.++.++... +.+....++....++..+-... ...+....--.+|+.+.... ++-|
T Consensus 161 LS~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~----~~~~ 235 (254)
T PF04826_consen 161 LSENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGES----SQLA 235 (254)
T ss_pred hccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccH----HHHH
Confidence 9999999888888 68899999999874 6777889999999986544221 12222344455666444322 2445
Q ss_pred HHHHHHh
Q 036199 651 LELRRLL 657 (710)
Q Consensus 651 ~~LL~~l 657 (710)
.+|..+.
T Consensus 236 ~~l~~l~ 242 (254)
T PF04826_consen 236 KKLQALA 242 (254)
T ss_pred HHHHHHH
Confidence 5555544
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.11 E-value=7.8e-09 Score=118.06 Aligned_cols=266 Identities=18% Similarity=0.191 Sum_probs=208.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|...+..++.-++..|..++..+......+.+.+.++.++..|.+ +|..+...|+.+|.+++.+...-..+...
T Consensus 84 ~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD----PDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 56777889999999999999998887777788899999999999987 78999999999999998776555556688
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
+.+..|..++...+. +-.+..++.+++ ..++....+..+|.++.++..|+++|.-++.+|+.+|..|+..+.+...+
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHH
Confidence 889999999988443 346777788887 55677777778999999999999999999999999999999999999999
Q ss_pred ccccchhchHHhhcC----c---h-HHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 545 APSEFLPKLVPFLKD----A---T-LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~----~---~-~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
.+.|+++.|+.++.+ + . ..--.+...++++..... ..+...+..+..|.+++..+++..+..|+.+|..+|
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~-~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ-EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 999999999999933 2 1 133345677788875222 222222445666777778899999999999999999
Q ss_pred cCChHHHHHHHhCC-chH----HHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 617 SQRDQYCKLVMNEG-VIP----SLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 617 ~~~~~~~~~v~~~G-~v~----~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+.......+....| .++ .......+++...|.++...|..+=
T Consensus 319 st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 319 STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 87744333324443 444 4444567788889999988888664
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.11 E-value=5.2e-10 Score=101.44 Aligned_cols=115 Identities=28% Similarity=0.418 Sum_probs=102.9
Q ss_pred HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcc
Q 036199 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEH 578 (710)
Q Consensus 502 ~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e 578 (710)
.+.+.|+++.|+++|.+++...+..|+.+|.+++.+ ++++..+++.|+++.|+++|.+ +.++..|+++|++|+.+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 456889999999999999999999999999999987 7888899999999999999965 5789999999999999764
Q ss_pred -hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 579 -ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 579 -~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
.+..+.. .|+++.|++++..++...++.|+++|.+||.
T Consensus 82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4455555 7999999999999999999999999999974
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.2e-10 Score=120.49 Aligned_cols=197 Identities=16% Similarity=0.280 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDS 518 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~ 518 (710)
....+.|+..|+|++.+-..-..+.....+..||+.|+..+.. ......|..||..++||..+++.|.|..|+++...
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 3455678889999988765555556788999999999877753 46677788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh
Q 036199 519 PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 519 ~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
..++.++..+..|+|||.+..++..|+..|.+|.|+.+|.+..-..-|+.+|..++..+..+..+.. ..||+.+.+.+-
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~ 435 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVL 435 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876666789999999999998888887 589999999877
Q ss_pred cCCHHHHHHHHHH-HHHHhcCChHHHHHHHhCCchHHHHHHh
Q 036199 599 IGSEEDQEHAVAI-LLCLCSQRDQYCKLVMNEGVIPSLVKIS 639 (710)
Q Consensus 599 ~~s~~~ke~A~~a-L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~ 639 (710)
.++...-.-++-+ -.+||.+. .+.+.+.+..++..|++..
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred hcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHH
Confidence 6544433333333 37888877 6778888877788887654
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.03 E-value=4e-09 Score=95.63 Aligned_cols=115 Identities=24% Similarity=0.298 Sum_probs=105.6
Q ss_pred ccccccchhchHHhhcCc--hHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 543 HIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+++.|+++.|+++|.++ .+...++.+|.+++.. ++.+..+.+ .|+++.|+.+|...+++.+++|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467889999999999665 6799999999999997 888888888 799999999999999999999999999999998
Q ss_pred hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 620 ~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+.....+.+.|+++.|+.++.+++.++++.|.++|..|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 888888999999999999999999999999999998764
No 24
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.02 E-value=1.9e-10 Score=111.84 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=53.8
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhh---------------CCCCCCCCCCccCCCCCcccHH
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE---------------GNHTCPKTKMKLVCQSLTPNTA 323 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~---------------g~~~cP~t~~~l~~~~l~pN~~ 323 (710)
.....++|.||||++.++|||++.|||.||+.||.+|+.. +...||.|+.++....++|.+.
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 3445678999999999999999999999999999999742 2468999999999999999864
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.01 E-value=1.9e-10 Score=85.11 Aligned_cols=39 Identities=33% Similarity=0.831 Sum_probs=30.8
Q ss_pred ccCCccccCCceecCCCCccchhhHHHHhhhCC---CCCCCC
Q 036199 271 CPLSLRLMYDPVVIESGQTFERMWIQKWFEEGN---HTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~---~~cP~t 309 (710)
||||+++|+|||+++|||+||+.||++|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 468875
No 26
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=1.5e-09 Score=128.05 Aligned_cols=219 Identities=19% Similarity=0.142 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHccCcccchhc-ccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc--cCCCCCccccccchHHH
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSL-SSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS--KNRSGIPYLNEDLFSLL 473 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I-~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~--~~~~k~~i~~~gaI~~L 473 (710)
.++-|..+|.+|.-++..|+..+ ...|+++.+|..|.+ ...+.+..-+.+|.||+= +...|..+-+.|-+..|
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s----~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL 442 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS----APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL 442 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc----ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence 34556777888888888898877 568999999999987 334677777889999962 33446666678988888
Q ss_pred HHHhc---cCcHHHHHHHHHHHhc-cCchhhHHHhh-hCcHHHHHHhhc----CCCHHHHHHHHHHHHHhccC----ccc
Q 036199 474 ASFLH---SAAATEETLAILVALS-SYAYFISKIVA-SGALASILNMLD----SPNGKFQELAIKILHNLSSD----VDI 540 (710)
Q Consensus 474 V~lL~---s~~~~~~Aa~~L~~Ls-~~~~nk~~I~~-~GaI~~LV~LL~----~~~~~~~~~A~~aL~nLs~~----~en 540 (710)
+..-- +++.....+.+||||+ ..-+||..|.+ .|++..||.+|. +.+..+.+.|.++|.|.+++ .+.
T Consensus 443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 87642 2334468899999999 67899999996 799999999994 33567889999999999864 444
Q ss_pred ccccccccchhchHHhhcCch--HHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 541 QSHIAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 541 ~~~iv~aG~V~~Lv~lL~~~~--~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
+..+.+.+++..|+++|.+.. ++.++|++||||+. +++.++.+.+ .|+|+.|..++.+....+-+-++++|.||-.
T Consensus 523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 555678999999999997764 58899999999976 8999999998 7999999999999888889999999999987
Q ss_pred CCh
Q 036199 618 QRD 620 (710)
Q Consensus 618 ~~~ 620 (710)
+.+
T Consensus 602 ~RP 604 (2195)
T KOG2122|consen 602 FRP 604 (2195)
T ss_pred CCc
Confidence 774
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.4e-08 Score=109.05 Aligned_cols=236 Identities=17% Similarity=0.171 Sum_probs=180.1
Q ss_pred HHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccC
Q 036199 401 VIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSA 480 (710)
Q Consensus 401 Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~ 480 (710)
.+.-|..|+- -.+|+..|.+.|.++.|+++... .+++.....+.+|+|++-+...+..++..|.+|.|+.+|++.
T Consensus 324 v~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 324 VIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHHhhh-hccchHHHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 3333444433 25688889999999999999977 788999999999999998888888889999999999999998
Q ss_pred cHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHH-HHhccCcccccccccccchhchHHh---
Q 036199 481 AATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKIL-HNLSSDVDIQSHIAPSEFLPKLVPF--- 556 (710)
Q Consensus 481 ~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL-~nLs~~~en~~~iv~aG~V~~Lv~l--- 556 (710)
....-|..+|+.+|.+++.|..+.-..+|+.|.+.+-+++..-...++-++ .|||.+..|...+++..++..|++.
T Consensus 399 ~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k 478 (791)
T KOG1222|consen 399 TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIK 478 (791)
T ss_pred ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhc
Confidence 877889999999999999999999999999999988766544444444444 4999999999988886666655442
Q ss_pred ---------h---c--C-----------------------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc
Q 036199 557 ---------L---K--D-----------------------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 557 ---------L---~--~-----------------------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+ + + +...-+|+++|+||.-.+-.-..|.+....||.+-..|..
T Consensus 479 ~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~p 558 (791)
T KOG1222|consen 479 SRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQP 558 (791)
T ss_pred ccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcC
Confidence 1 0 1 1134568999999998777777888778899999988887
Q ss_pred CCH--HHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 600 GSE--EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 600 ~s~--~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
|-. ...-..+-++ .-|.....+..++..+|+++.|++|++.+
T Consensus 559 ga~eddLvL~~vi~~-GT~a~d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 559 GADEDDLVLQIVIAC-GTMARDLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred CccchhhhhHHHHHh-hhhhhhhHHHHHhCccccHHHHHHHHHhh
Confidence 522 2222222222 23444446777888899999999997654
No 28
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.3e-10 Score=110.02 Aligned_cols=76 Identities=28% Similarity=0.420 Sum_probs=71.7
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
...+|+.++|.|+.+||+|||++++|.||+|..|..++..-.++.|+|+.+|+...++||++|+..|..|...|..
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 4578999999999999999999999999999999999998777899999999999999999999999999998864
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=1.9e-09 Score=117.06 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=63.4
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
.+-..|.||||+++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|+.|..+|+.|...
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 45677999999999999999999999999999999975 45899999999888899999999999999653
No 30
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.77 E-value=2.7e-09 Score=84.19 Aligned_cols=44 Identities=34% Similarity=0.719 Sum_probs=32.1
Q ss_pred CcccccCCccccCCceec-CCCCccchhhHHHHhh-hCCCCCCCCC
Q 036199 267 EVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFE-EGNHTCPKTK 310 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~-~g~~~cP~t~ 310 (710)
-.|.||||+..|.|||.- .|||+|||++|..|+. .+...||++|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 368999999999999985 9999999999999994 4567799965
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.67 E-value=8.8e-07 Score=101.31 Aligned_cols=207 Identities=19% Similarity=0.209 Sum_probs=167.8
Q ss_pred HHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHH-Hh
Q 036199 428 LIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISK-IV 504 (710)
Q Consensus 428 LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~-I~ 504 (710)
++..|.. .+.+.-..++.+|..+........ ...+..+.|...|.+++.. ..++..|.++..+.+.... +.
T Consensus 43 lf~~L~~----~~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNT----SNREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhh----cChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 6777765 355555666677777755432222 2577889999999988763 6888889888866665444 44
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHH
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARV 581 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~ 581 (710)
+.+.++.++.+|.+++..+.+.|+.+|.+|+.++.+...++..+.+..|..++.. ..++-.+..++.+++.. ++...
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6899999999999999999999999999999998888888899999999999955 45678889999999874 55566
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
.+.. .|.++.++..|.+.+.-.|.+|+.+|..|+..+ ...+.+.+.|+++.|+.++.+.
T Consensus 197 ~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 197 AVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhcc
Confidence 6666 899999999999999999999999999999944 7788899999999999986554
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.63 E-value=6.6e-07 Score=96.27 Aligned_cols=227 Identities=18% Similarity=0.188 Sum_probs=160.4
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc-------ccchHHHHHHhccCcHH--HHHHHHHHHh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN-------EDLFSLLASFLHSAAAT--EETLAILVAL 493 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~-------~gaI~~LV~lL~s~~~~--~~Aa~~L~~L 493 (710)
++...++.+|... ..+.++..+.+..+-.+..++..+..++. ...+.++++++.+++.. ..|+.+|..|
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4677888888763 25788899999999998766554443331 12678888888888753 5788888888
Q ss_pred ccCchhhHHHhhhCcHHHHHHhhcC----CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh------cCc---
Q 036199 494 SSYAYFISKIVASGALASILNMLDS----PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL------KDA--- 560 (710)
Q Consensus 494 s~~~~nk~~I~~~GaI~~LV~LL~~----~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL------~~~--- 560 (710)
......+..-...+.++.+++.|.+ .+.+.+..|+.+|.+|...++.+..+.+.|+++.|+.+| ...
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 7665555544446778888888864 344567899999999999999999999999999999999 222
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchHHHHHH
Q 036199 561 TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIPSLVKI 638 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~~Lv~L 638 (710)
.++-+++-+++.|+-+++....+.. .+.|+.|+++++. ...++-.-++++|.|+...... +...|+..|+.+.|-.|
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 3588999999999999999999988 5799999999986 5888889999999999988843 88889999988888777
Q ss_pred hhc--CCHHHHHHHHH
Q 036199 639 SVY--GNDKAKVSALE 652 (710)
Q Consensus 639 ~~~--gt~~~k~kA~~ 652 (710)
... ++++..+--..
T Consensus 292 ~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEF 307 (312)
T ss_dssp HSS--SSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHH
Confidence 543 24555444333
No 33
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.61 E-value=2e-08 Score=73.22 Aligned_cols=38 Identities=39% Similarity=0.829 Sum_probs=33.2
Q ss_pred ccCCccccCCc-eecCCCCccchhhHHHHhhhCCCCCCCC
Q 036199 271 CPLSLRLMYDP-VVIESGQTFERMWIQKWFEEGNHTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DP-V~~~~G~ty~r~~I~~w~~~g~~~cP~t 309 (710)
||||++.++|| |+++|||+|++.||++|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999997 6789975
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.57 E-value=1.5e-06 Score=93.54 Aligned_cols=210 Identities=20% Similarity=0.213 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhccc------CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSS------TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~------~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
+.+.+...-.+.-+-.+..+++.....+.. .....+++++|.+ +|.-++..|+.+|..+......+....
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~Ll~~~~~~~~~~ 143 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR----NDSFIQLKAAFILTSLLSQGPKRSEKL 143 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHcCCccccch
Confidence 346677777777778888777755554443 1267888888876 799999999999999976554333322
Q ss_pred cccchHHHHHHhccCcHH------HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh-----c--CCCHHHHHHHHHHHH
Q 036199 466 NEDLFSLLASFLHSAAAT------EETLAILVALSSYAYFISKIVASGALASILNML-----D--SPNGKFQELAIKILH 532 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~------~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL-----~--~~~~~~~~~A~~aL~ 532 (710)
..+.++.++.+|.+.... ..|+.+|.+|...+.+|..+.+.|+++.|+.+| . ..+.+.+-.++-++|
T Consensus 144 ~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 144 VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 357889999998863321 578999999999999999999999999999999 2 234678899999999
Q ss_pred HhccCcccccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcc--hHHHHHhhcCChHHHHHHhhc---CCHHH
Q 036199 533 NLSSDVDIQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEH--ARVCVVETSGCLPSVAELLEI---GSEED 604 (710)
Q Consensus 533 nLs~~~en~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e--~r~~i~~~~g~I~~Lv~lL~~---~s~~~ 604 (710)
-||.+++....+.+.+.|+.|++++.+ +.+.+-++++|.||..... ....++. .| +..++..|.. ++++.
T Consensus 224 lLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~-~l~~l~~L~~rk~~Dedl 301 (312)
T PF03224_consen 224 LLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CG-LLKTLQNLSERKWSDEDL 301 (312)
T ss_dssp HHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H--HHHHHHHHHSS--SSHHH
T ss_pred HHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-cc-HHHHHHHHhcCCCCCHHH
Confidence 999999999999999999999999943 5789999999999999666 7778877 34 5666666654 46666
Q ss_pred HHH
Q 036199 605 QEH 607 (710)
Q Consensus 605 ke~ 607 (710)
.+.
T Consensus 302 ~ed 304 (312)
T PF03224_consen 302 TED 304 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 35
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.55 E-value=2.7e-06 Score=90.94 Aligned_cols=253 Identities=14% Similarity=0.150 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHH----HHHHHHHHHHHHhccCCCCCcccc-ccchHH
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSR----AQRIGCRLLLAFVSKNRSGIPYLN-EDLFSL 472 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~----~q~~A~~~L~nL~~~~~~k~~i~~-~gaI~~ 472 (710)
..+.+.++..-+.+++..+..+++.|.++.++.+++.-..-.+.. .-..++....-++..++.-..... ...+..
T Consensus 240 ~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~ 319 (604)
T KOG4500|consen 240 IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDF 319 (604)
T ss_pred hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHH
Confidence 344556666666778888999999999999999997621111111 112222222222332322122223 337899
Q ss_pred HHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc-----CCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 473 LASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLD-----SPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 473 LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~-----~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
++.++.|.+.. ..++-++.|++..+++...+++.|.+..|+++|. .|+.+.+..++.||.||..--.||..++
T Consensus 320 ~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~ 399 (604)
T KOG4500|consen 320 LESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA 399 (604)
T ss_pred HHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence 99999988864 4677788899999999999999999999999993 4678999999999999999999999999
Q ss_pred cccchhchHHhh--cCchHHHHHHHHHHHHhcCcc-hHHHHHhhcCChHHHHHHhhcCCHH-HHHHHHHHHHHHhcCC--
Q 036199 546 PSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEH-ARVCVVETSGCLPSVAELLEIGSEE-DQEHAVAILLCLCSQR-- 619 (710)
Q Consensus 546 ~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~~~e-~r~~i~~~~g~I~~Lv~lL~~~s~~-~ke~A~~aL~~Lc~~~-- 619 (710)
.+|.+.+++..+ ..|.++-+-++.|+.+-...+ ...++..+...+..||+.-++.+-. +--..-..|..+-.++
T Consensus 400 ~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~ 479 (604)
T KOG4500|consen 400 PAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY 479 (604)
T ss_pred ccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh
Confidence 999999999998 457888888888888877655 4455565555667777766665443 3444556666666664
Q ss_pred hHHHHHHHhCCchHHHHHHhhcCCHHHHHHH
Q 036199 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650 (710)
Q Consensus 620 ~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA 650 (710)
.+....+.+.|++..++.+.....--.+..|
T Consensus 480 kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 480 KDVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred hhhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 3455667788888888777655544444333
No 36
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.49 E-value=5.3e-08 Score=72.16 Aligned_cols=36 Identities=28% Similarity=0.675 Sum_probs=23.3
Q ss_pred ccCCccccCC----ceecCCCCccchhhHHHHhhhC---CCCCC
Q 036199 271 CPLSLRLMYD----PVVIESGQTFERMWIQKWFEEG---NHTCP 307 (710)
Q Consensus 271 CPI~~~~m~D----PV~~~~G~ty~r~~I~~w~~~g---~~~cP 307 (710)
||||.+ |.+ |++++||||||+.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 45576
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.9e-06 Score=93.60 Aligned_cols=246 Identities=19% Similarity=0.234 Sum_probs=183.6
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHH-ccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcc
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRL-EHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPY 464 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~La-k~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i 464 (710)
..|... ++..|.+|+.+|..+. -.+++.-..+--.-++|.||.+|+.. .+.+++-.|+.+|.++.. -.+.-..+
T Consensus 174 ~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 174 QGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccchhhee
Confidence 444443 7788899999987554 44555544444567899999999874 679999999999999965 34555667
Q ss_pred ccccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cc
Q 036199 465 LNEDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD--VD 539 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~--~e 539 (710)
++.++||.|+.-|..=. ..|.++.+|..+|..+ -..|.++|+|...+..|+==+..+++.|+.+-.|.|.. ++
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 89999999998665322 2478899998888543 35677899999999999777889999999999999963 33
Q ss_pred cccccccccchhchHHhhc--CchHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcC----CHHHHHHHH
Q 036199 540 IQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIG----SEEDQEHAV 609 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~----s~~~ke~A~ 609 (710)
.-..+ +.++|.|..+|. +....+.++-.+..++. .++--..+.. .|.|.....+|... +....---+
T Consensus 329 ~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~Ls~~~~~~vI 405 (1051)
T KOG0168|consen 329 EFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTILSNGTYTGVI 405 (1051)
T ss_pred cchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCcccccccchhHHH
Confidence 33333 468999999994 45667777777777766 2334466777 68899999888753 333445567
Q ss_pred HHHHHHhcCChHHHHHHHhCCchHHHHHHhhc
Q 036199 610 AILLCLCSQRDQYCKLVMNEGVIPSLVKISVY 641 (710)
Q Consensus 610 ~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~ 641 (710)
..|..+|++++-......+.++...|..++..
T Consensus 406 rmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 406 RMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 77788888888888889999999999887654
No 38
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.42 E-value=1.4e-07 Score=74.68 Aligned_cols=58 Identities=17% Similarity=0.405 Sum_probs=34.1
Q ss_pred cccccCCccccCCcee-cCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHH
Q 036199 268 VFKCPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLI 328 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i 328 (710)
-++|++|.++|++||. ..|.|.||+.||.+.+.. .||+|+.|..-.++.-|+.|-++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3789999999999997 499999999999987753 399999999889999999998886
No 39
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.40 E-value=5.1e-06 Score=88.91 Aligned_cols=270 Identities=11% Similarity=0.114 Sum_probs=192.9
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCC---HHHHHHHHHHHHHHhcc-CCCCCcccc
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHD---SRAQRIGCRLLLAFVSK-NRSGIPYLN 466 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d---~~~q~~A~~~L~nL~~~-~~~k~~i~~ 466 (710)
.+.+.++-.+....|...+-++.++|..+.+.|+-..+++.|+.-+...+ .+...-+...|.|.+.+ +.-+...++
T Consensus 97 sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~ 176 (604)
T KOG4500|consen 97 SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVAD 176 (604)
T ss_pred CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHh
Confidence 34445666677778888889999999999999998888998876433223 24455566677777544 344566678
Q ss_pred ccchHHHHHHhccCcH------------------------------------------------HHHHHHHHHHhccCch
Q 036199 467 EDLFSLLASFLHSAAA------------------------------------------------TEETLAILVALSSYAY 498 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~------------------------------------------------~~~Aa~~L~~Ls~~~~ 498 (710)
.|+++.|+..+.=+.. .+-...+|...+.++.
T Consensus 177 ~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~ 256 (604)
T KOG4500|consen 177 AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL 256 (604)
T ss_pred cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc
Confidence 8998877755531110 0112445555667777
Q ss_pred hhHHHhhhCcHHHHHHhhcC-CCH-------HHHHHHHHHHHHhccCccccccccccc-chhchHHhhcC--chHHHHHH
Q 036199 499 FISKIVASGALASILNMLDS-PNG-------KFQELAIKILHNLSSDVDIQSHIAPSE-FLPKLVPFLKD--ATLAVSCL 567 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~-~~~-------~~~~~A~~aL~nLs~~~en~~~iv~aG-~V~~Lv~lL~~--~~~~~~al 567 (710)
.|..+++.|.+.-++++++. .+. ...+.++....-|...++.-..+..-| .++.++.-+.+ .++.....
T Consensus 257 Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~ 336 (604)
T KOG4500|consen 257 VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGS 336 (604)
T ss_pred eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHH
Confidence 88888889999999998865 221 223344444455555666666666555 66667777744 45677777
Q ss_pred HHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-----CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 568 VILKNMCNTEHARVCVVETSGCLPSVAELLEI-----GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 568 ~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-----~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
-+++|+++.+.....+++ .|.+..|++.|.. |+.+.+-.++++|.++.--- .++..+..+|+++.++..++..
T Consensus 337 LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 337 LAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAILLQLKLA 414 (604)
T ss_pred HHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHHHHHHhc
Confidence 789999999999999999 7999999998763 67888889999999998766 5788999999999998888888
Q ss_pred CHHHHHHHHHHHHHhhhccC
Q 036199 643 NDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 643 t~~~k~kA~~LL~~l~~~~~ 662 (710)
.|.+.-+-..-|+.+++..+
T Consensus 415 ~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 415 SPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred CCcchHHHHHHHHHHHhchH
Confidence 77777776666666665544
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.39 E-value=8.1e-06 Score=90.25 Aligned_cols=269 Identities=12% Similarity=0.049 Sum_probs=186.0
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
|+..|...++-++..|...|..++..+..+..-....-+...|...|++. .+...+..|+.+|..+...+..|..+.
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 33445556677788888888777765443211111111333455555542 357788889999999988888888888
Q ss_pred cccchHHHHHHhccCc-H-H--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCc--
Q 036199 466 NEDLFSLLASFLHSAA-A-T--EETLAILVALSSYAYFISKIVASGALASILNMLDSP-NGKFQELAIKILHNLSSDV-- 538 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~-~-~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~-~~~~~~~A~~aL~nLs~~~-- 538 (710)
+.++++.|+.+|+... . + -+++-+++-||-.++........+.|+.|+++++.. ...+.+-++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 8889999999998644 1 2 488999999998887777666789999999999755 4577889999999999743
Q ss_pred -----ccccccccccchhchHHhh----cCchHHHH-------HHHHHHHHhcCcc------------------------
Q 036199 539 -----DIQSHIAPSEFLPKLVPFL----KDATLAVS-------CLVILKNMCNTEH------------------------ 578 (710)
Q Consensus 539 -----en~~~iv~aG~V~~Lv~lL----~~~~~~~~-------al~iL~nLa~~~e------------------------ 578 (710)
.....|+..|..+.+-.+. +|+++.+. --.....|++-++
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 1234567667655444443 34554222 1112233333232
Q ss_pred hHHHHHhhc-CChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 579 ARVCVVETS-GCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 579 ~r~~i~~~~-g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
+...+-+.. ..+..|+++|. +.++.....||.=+..++.+.|.-+..+-+.|+=..++.|+.+.++.+|..|...++.
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 223333211 13578888885 4577777778877889999888888889999999999999999999999999998885
Q ss_pred h
Q 036199 657 L 657 (710)
Q Consensus 657 l 657 (710)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 4
No 41
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.36 E-value=2.7e-07 Score=67.98 Aligned_cols=39 Identities=38% Similarity=0.910 Sum_probs=36.4
Q ss_pred ccCCccccCCce-ecCCCCccchhhHHHHhh-hCCCCCCCC
Q 036199 271 CPLSLRLMYDPV-VIESGQTFERMWIQKWFE-EGNHTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DPV-~~~~G~ty~r~~I~~w~~-~g~~~cP~t 309 (710)
||||++.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 677889975
No 42
>PRK09687 putative lyase; Provisional
Probab=98.36 E-value=3.4e-05 Score=81.62 Aligned_cols=220 Identities=13% Similarity=0.125 Sum_probs=113.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+..++..|+..|..+- ....++.+..++.+ .|+.++..|+.+|..+-..... ..
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 5566677777877777776442 24466777777766 6788888888888876322110 23
Q ss_pred cchHHHHHH-hccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASF-LHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~l-L~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.+++.|..+ +++++. +..|+.+|.++....... ...++..|...+.+.+..++..|+.+|.++.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------- 156 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------- 156 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------
Confidence 467777776 444443 347777777664322100 1112334444444445555555555553322
Q ss_pred ccccchhchHHhhcC--chHHHHHHHHHHHHhcCcc-hHH----------------------HHHhhcCChHHHHHHhhc
Q 036199 545 APSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEH-ARV----------------------CVVETSGCLPSVAELLEI 599 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e-~r~----------------------~i~~~~g~I~~Lv~lL~~ 599 (710)
...+++.|+.+|.+ +.+...|+..|+.+....+ ... .+. +..+|+.|++.|..
T Consensus 157 -~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~-~~~av~~Li~~L~~ 234 (280)
T PRK09687 157 -DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK-DKRVLSVLIKELKK 234 (280)
T ss_pred -CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC-ChhHHHHHHHHHcC
Confidence 12344555555533 2344444444444411000 000 000 02244555555544
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHH
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRR 655 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~ 655 (710)
++ .+..|+.+|-.+... -++|.|..++. +.+.+++.+|.+.|+
T Consensus 235 ~~--~~~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 235 GT--VGDLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred Cc--hHHHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 33 223344444333221 24678877775 777888888877664
No 43
>PRK09687 putative lyase; Provisional
Probab=98.31 E-value=2.2e-05 Score=83.09 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=135.7
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhH
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFIS 501 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~ 501 (710)
.++.|+.+|.+ .|..++..|+.+|..+- ...+++.+..++.+++.. ..|+++|..|...+..
T Consensus 24 ~~~~L~~~L~d----~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 24 NDDELFRLLDD----HNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred cHHHHHHHHhC----CCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 47788899977 78999999999988662 356788999999888763 5889999887643321
Q ss_pred HHhhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcc
Q 036199 502 KIVASGALASILNM-LDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEH 578 (710)
Q Consensus 502 ~I~~~GaI~~LV~L-L~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e 578 (710)
...+++.|..+ +.+.++.++..|+.+|.+++....+. ...++..|...+.+ +.++..++.+|..+.
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---- 156 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---- 156 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----
Confidence 22467888887 67888999999999999986433211 22345566666654 456777777775442
Q ss_pred hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 579 ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 579 ~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
. ..+++.|+.+|...++.++..|+.+|-.+...++ .+++.|+.++.+.+..+|..|...|.
T Consensus 157 ------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 157 ------D-EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1 3468888889988888899999988888744332 34566777777777777777777665
No 44
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.3e-07 Score=88.96 Aligned_cols=58 Identities=26% Similarity=0.543 Sum_probs=51.6
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhh--hCCCCCCCCCCccCCCCCcccHH
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE--EGNHTCPKTKMKLVCQSLTPNTA 323 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~--~g~~~cP~t~~~l~~~~l~pN~~ 323 (710)
-..|-|-||++.=+|||++.|||=||=-||.+|+. .+...||+|+-..+...++|=|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 35699999999999999999999999999999987 34566899999999999999654
No 45
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.19 E-value=1.1e-06 Score=89.41 Aligned_cols=48 Identities=19% Similarity=0.503 Sum_probs=40.9
Q ss_pred CCcccccCCccccCCc--------eecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYDP--------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP--------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
..+..||||++.+.+| |+.+|||+||+.||.+|+. .+.+||.|+.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 4467899999988774 5678999999999999987 4779999998765
No 46
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.19 E-value=1.1e-06 Score=67.70 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=41.0
Q ss_pred CcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccC
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+++.|+||++-+.|+++++|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46889999999999999999999 99999999998 6778999998765
No 47
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.17 E-value=7e-07 Score=92.06 Aligned_cols=70 Identities=14% Similarity=0.416 Sum_probs=62.7
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
.+-.-++|-||.+.|+-||+++||||||--||.+++. .++.||.|..++....|+-|+-|-.+|+.+-..
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 3445589999999999999999999999999999997 478899999999999999999999999988543
No 48
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-06 Score=92.60 Aligned_cols=70 Identities=24% Similarity=0.569 Sum_probs=60.7
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
...+++.||||++.|++|++++||||||+.||..|+. +...||.|+. ....+.+|..+..+++.....+.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~--~~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP--PSRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC--chhccCccHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999999999999998 7778999985 22377899999999999877654
No 49
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.3e-06 Score=100.56 Aligned_cols=73 Identities=30% Similarity=0.414 Sum_probs=67.2
Q ss_pred cCCCCCcccccCCccccCCceecC-CCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
-.++|++|.-||+..+|+|||+++ +|+|-||+.|++++-. ..|.|.|+++|+...++||..||.-|+.|....
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999998 9999999999999875 457999999999999999999999999996654
No 50
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.4e-06 Score=92.52 Aligned_cols=75 Identities=27% Similarity=0.412 Sum_probs=67.2
Q ss_pred ccccCCCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 259 NLSRAIIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 259 ~~~~~~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
+++.+++|++|+.|++..+|+|||++ .+|.|.||+.|..++-++ .|.|..+.||+-.+++||-.||..|-.|...
T Consensus 845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 34578899999999999999999998 668999999999998754 4899999999999999999999999988554
No 51
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.08 E-value=3e-06 Score=62.86 Aligned_cols=43 Identities=37% Similarity=0.858 Sum_probs=39.0
Q ss_pred cccCCccccCCceecC-CCCccchhhHHHHhhhCCCCCCCCCCc
Q 036199 270 KCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 270 ~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~g~~~cP~t~~~ 312 (710)
.||||++.+.+|+.+. |||+|+..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999886 999999999999999878889999865
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=8.5e-05 Score=85.42 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=154.1
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHh--ccCCCCCccccccchHHHHHHhccCcH---HHHHHHHHHHhc-cCc
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV--SKNRSGIPYLNEDLFSLLASFLHSAAA---TEETLAILVALS-SYA 497 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~--~~~~~k~~i~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls-~~~ 497 (710)
-+..|+.=|.. ..|+..|..|+.-|..+. .++..-..+.-.-.+|.||.+|+++.. .-.|+.+|.+|+ ..+
T Consensus 168 k~kkLL~gL~~---~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQA---ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccc---cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 34455555544 358889999999888763 344443344456789999999998764 358999999998 577
Q ss_pred hhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHHHHh
Q 036199 498 YFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMC 574 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa 574 (710)
.....+++.++||.|+.-| .-.-.++.+.++.||-.||..+. ..+.++|++-..+..|. +-.++..|+++.+|+|
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999765 45567899999999999996432 46789999999988883 4567999999999999
Q ss_pred c--CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC---ChHHHHHHHhCCchHH
Q 036199 575 N--TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ---RDQYCKLVMNEGVIPS 634 (710)
Q Consensus 575 ~--~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~---~~~~~~~v~~~G~v~~ 634 (710)
. .++.-..+++ .+|.|-.+|...+.+.-|.++-+|..+..+ .++.-+.+...|.+.-
T Consensus 323 ksi~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~ 384 (1051)
T KOG0168|consen 323 KSIRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITN 384 (1051)
T ss_pred hcCCCccchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHH
Confidence 8 5666677777 599999999999999999998888776532 3344444555555443
No 53
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.8e-06 Score=79.92 Aligned_cols=51 Identities=25% Similarity=0.596 Sum_probs=43.9
Q ss_pred ccccCCccccCC--ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc
Q 036199 269 FKCPLSLRLMYD--PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320 (710)
Q Consensus 269 f~CPI~~~~m~D--PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p 320 (710)
|.||||++-... ||.+.|||-||+.||+..++.++ .||.|++.+++..+.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR 184 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence 999999998876 45579999999999999998655 7999999988876654
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00016 Score=76.86 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=148.9
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC-c-
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD-A- 560 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~-~- 560 (710)
+.|..-|..+..+-+|.-.+...|+..+|+..+.+.+..+++.|+++|...+. ++.....+.+.|+.+.|+..++. .
T Consensus 101 e~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~ 180 (342)
T KOG2160|consen 101 EDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDP 180 (342)
T ss_pred HHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCC
Confidence 57777778888888899999999999999999999999999999999999987 57788889999999999999953 2
Q ss_pred -hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHH
Q 036199 561 -TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV 636 (710)
Q Consensus 561 -~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv 636 (710)
....+|+.++..|-+ ++.|...+.. .+|...|..+|.. .+.+.|..|+..+..|..........+...|....++
T Consensus 181 ~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~ 259 (342)
T KOG2160|consen 181 NTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLE 259 (342)
T ss_pred chHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Confidence 346889999999888 5777888887 6779999999998 6788899999999999888866777888888888889
Q ss_pred HHhhcCCHHHHHHHHH-HHHHhhhcc
Q 036199 637 KISVYGNDKAKVSALE-LRRLLRDVA 661 (710)
Q Consensus 637 ~L~~~gt~~~k~kA~~-LL~~l~~~~ 661 (710)
.+..+....+++.|.. +|..+....
T Consensus 260 ~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 260 NLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHHh
Confidence 9998888888888876 444444443
No 55
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.97 E-value=3.1e-06 Score=63.39 Aligned_cols=40 Identities=30% Similarity=0.788 Sum_probs=33.7
Q ss_pred cccCCccccC---CceecCCCCccchhhHHHHhhhCCCCCCCCC
Q 036199 270 KCPLSLRLMY---DPVVIESGQTFERMWIQKWFEEGNHTCPKTK 310 (710)
Q Consensus 270 ~CPI~~~~m~---DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~ 310 (710)
.||||++-|. .++.++|||.|.++||.+|+.. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 5667899999999999999987 56999984
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00016 Score=76.85 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=145.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHH
Q 036199 438 LHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALS-SYAYFISKIVASGALASILN 514 (710)
Q Consensus 438 ~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~ 514 (710)
+.+.+.++.|..-|..++++-.|-.-+...|+...++..|++++. ++.|+++|..++ .++.....+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 357888888888888888776666667789999999999998876 479999999777 57788889999999999999
Q ss_pred hhcCC-CHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcCc----hHHHHHHHHHHHHhcCcchHHHHHhhcC
Q 036199 515 MLDSP-NGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKDA----TLAVSCLVILKNMCNTEHARVCVVETSG 588 (710)
Q Consensus 515 LL~~~-~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~~----~~~~~al~iL~nLa~~~e~r~~i~~~~g 588 (710)
+|.+. +..++..|+.|+..|-.+ +.....+...++...|.+.|.++ .++.+++..+..|......-..+....|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99655 456779999999999874 56677888899999999999653 4588999999999874333333555456
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
....++.+....+....++|+.+++.+-..-
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 6677777777889999999999987765544
No 57
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.95 E-value=7e-06 Score=58.67 Aligned_cols=39 Identities=49% Similarity=1.019 Sum_probs=36.3
Q ss_pred ccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCC
Q 036199 271 CPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t 309 (710)
||||++...+|++++|||.|+..|+..|+..+...||.+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998777789975
No 58
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.92 E-value=6.1e-06 Score=83.59 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=60.4
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
-.-++|-||.+.++-|++++||||||.-||.+++. .++.||.|+.+.....+.-|..++..++.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 34589999999999999999999999999999997 478999999988888888898899888887543
No 59
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.86 E-value=0.0012 Score=80.99 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=126.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++.++..|+..|.... ..+.++.|+..|.+ .+..++..|+.+|..+....
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~--------- 683 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGD----GAAAVRRAAAEGLRELVEVL--------- 683 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhcc---------
Confidence 6677888899999988877542 35578889998866 78889998988888773211
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhcc-----------Cch--hhHH----HhhhCcHHHHHHhhcCCCHHHHHHHH
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSS-----------YAY--FISK----IVASGALASILNMLDSPNGKFQELAI 528 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~-----------~~~--nk~~----I~~~GaI~~LV~LL~~~~~~~~~~A~ 528 (710)
...+.|...|++++.. ..|+.+|..+.. +++ .|.. ++..+..+.|..++.++++.++..|+
T Consensus 684 ~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa 763 (897)
T PRK13800 684 PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVA 763 (897)
T ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHH
Confidence 1124666677665542 344444443321 000 0110 11112233444444444555555555
Q ss_pred HHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHH
Q 036199 529 KILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQE 606 (710)
Q Consensus 529 ~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke 606 (710)
.+|..+... ..+.++.|+.++.|+ .++..|+..|..+... ...++.|+..|...++.++.
T Consensus 764 ~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL~d~d~~VR~ 825 (897)
T PRK13800 764 KGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP----------PDDVAAATAALRASAWQVRQ 825 (897)
T ss_pred HHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chhHHHHHHHhcCCChHHHH
Confidence 555444321 112355566666443 3455555555444221 11234566666666777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 607 ~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
.|+.+|..+... -+++.|+.++.+.+..+|..|...|..+
T Consensus 826 ~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 826 GAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 777777655322 2358999999999999999999988775
No 60
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.80 E-value=3.2e-05 Score=56.86 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=37.9
Q ss_pred CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
+++++..|++.|+||+|+++|.++++++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999997
No 61
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.79 E-value=9.5e-05 Score=67.90 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=123.5
Q ss_pred hhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHH
Q 036199 505 ASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARV 581 (710)
Q Consensus 505 ~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~ 581 (710)
..|-+..||+=.. ..+.+.++....-|.|.+.++-|-..+.+..+++..++-|.+ ..+.+.+++.|.|||-.+.+..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 3455777777664 457899999999999999999999999999999999999965 4579999999999999999999
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.|.+ ++++|.++..+.+.....--.|+..|..||-.+...+..+....++........+.+-+-+--|...|.
T Consensus 94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998 899999999998888888888999999999988777888887777777666554445555555555554
No 62
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.78 E-value=0.0018 Score=79.61 Aligned_cols=214 Identities=14% Similarity=0.069 Sum_probs=138.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|...+.+++..|+..|..+...- ...+.|...|.+ .|+.++..|+.+|..+. .
T Consensus 659 ~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~----~d~~VR~~A~~aL~~~~-----------~ 713 (897)
T PRK13800 659 AALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGS----PDPVVRAAALDVLRALR-----------A 713 (897)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcC----CCHHHHHHHHHHHHhhc-----------c
Confidence 5566778888888888877664211 112455566654 56666666666665541 1
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhc---------cC--chhhHHH----h-----hhCcHHHHHHhhcCCCHHHHH
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALS---------SY--AYFISKI----V-----ASGALASILNMLDSPNGKFQE 525 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls---------~~--~~nk~~I----~-----~~GaI~~LV~LL~~~~~~~~~ 525 (710)
+....|+..|.+++.. ..|+.+|..+. .+ ...|... + ..+.++.|+.++.++++.++.
T Consensus 714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~ 793 (897)
T PRK13800 714 GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRA 793 (897)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHH
Confidence 1123444555544431 23333333221 11 1111111 1 123478999999999999999
Q ss_pred HHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHH
Q 036199 526 LAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEE 603 (710)
Q Consensus 526 ~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~ 603 (710)
.|+.+|.++... ..+++.|+..|.++ .++..|+.+|..+.. ...++.|+.+|...+..
T Consensus 794 aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 794 AALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHH
Confidence 999999888532 12335688888665 467778888876532 34679999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 604 DQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 604 ~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
++..|+.+|..+. .++ .+.+.|...+.+.+..+|+.|...|..
T Consensus 854 VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999998862 221 236788889999999999999998864
No 63
>PF05536 Neurochondrin: Neurochondrin
Probab=97.78 E-value=0.00038 Score=80.22 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=116.3
Q ss_pred cchHHHHHHhccCcHHH--HHHHHHHHhccCch----hhHHHhhhCcHHHHHHhhcCC-------CHHHHHHHHHHHHHh
Q 036199 468 DLFSLLASFLHSAAATE--ETLAILVALSSYAY----FISKIVASGALASILNMLDSP-------NGKFQELAIKILHNL 534 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~~--~Aa~~L~~Ls~~~~----nk~~I~~~GaI~~LV~LL~~~-------~~~~~~~A~~aL~nL 534 (710)
..+...+.+|++....+ .++..+..+...++ .+..|.++=+...|-+||+++ ....+..|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34667778888776433 44445556665433 344566766678888999773 356778899999999
Q ss_pred ccCcccccccccccchhchHHhhcC--c-hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 535 SSDVDIQSHIAPSEFLPKLVPFLKD--A-TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 535 s~~~en~~~iv~aG~V~~Lv~lL~~--~-~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
|..++....=-=.+-||.|++.+.. . .+...|+.+|..++.+++|+.++.+ .|+|+.|++.+.+ .+...+.|+.+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHHHH
Confidence 9977665432225789999999943 4 6799999999999999999999999 7999999999987 77789999999
Q ss_pred HHHHhcCCh
Q 036199 612 LLCLCSQRD 620 (710)
Q Consensus 612 L~~Lc~~~~ 620 (710)
|.+++....
T Consensus 163 L~~Lls~~~ 171 (543)
T PF05536_consen 163 LLNLLSRLG 171 (543)
T ss_pred HHHHHHhcc
Confidence 999988663
No 64
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.74 E-value=0.0011 Score=73.57 Aligned_cols=204 Identities=14% Similarity=0.172 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhccc-----CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSS-----TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~-----~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
..+...-.+.-+-.+...++..-..+.+ .....+++.+|.+ .|.-++..|+.+|..+......+. ...
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~----~d~~i~~~a~~iLt~l~~~~~~~~---~~~ 139 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR----QDQFIVHMSFSILAKLACFGLAKM---EGS 139 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC----CchhHHHHHHHHHHHHHhcCcccc---chh
Confidence 3444444555555666555543333333 3567788888876 678889999999988855332221 122
Q ss_pred chH----HHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc
Q 036199 469 LFS----LLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 469 aI~----~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~~e 539 (710)
.++ .|...|++++. ..-|+..|..|...+++|..+.+.+++++|+++|+.. +.+.+-.++-++|-||.+++
T Consensus 140 ~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~ 219 (429)
T cd00256 140 DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH 219 (429)
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH
Confidence 333 44455554332 2577888999999999999999988999999999753 46888999999999999988
Q ss_pred cccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCc-------chHHHHHhhcCChHHHHHHhhc---CCHHHHH
Q 036199 540 IQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTE-------HARVCVVETSGCLPSVAELLEI---GSEEDQE 606 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~-------e~r~~i~~~~g~I~~Lv~lL~~---~s~~~ke 606 (710)
....+...|.|+.|++++.. +.+++-++++|.||...+ .....+++ . +++.++..|.. ++++..+
T Consensus 220 ~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~-~l~~~l~~L~~rk~~DedL~e 297 (429)
T cd00256 220 AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-C-KVLKTLQSLEQRKYDDEDLTD 297 (429)
T ss_pred HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-c-ChHHHHHHHhcCCCCcHHHHH
Confidence 88888889999999999954 578999999999999843 12234555 3 45667777764 4555544
No 65
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=4e-05 Score=80.38 Aligned_cols=63 Identities=19% Similarity=0.345 Sum_probs=47.7
Q ss_pred CcccccCCccc-cCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC----CcccHHHHHHHH
Q 036199 267 EVFKCPLSLRL-MYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS----LTPNTAMKDLIS 329 (710)
Q Consensus 267 ~~f~CPI~~~~-m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~----l~pN~~l~~~i~ 329 (710)
++..||+|+.- ...|- +.+|||+||++||.+.|..|...||.|+.++.... +.++..+.+-|.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 46789999982 33442 22799999999999988888889999999988766 555655555554
No 66
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=5.6e-06 Score=86.51 Aligned_cols=67 Identities=31% Similarity=0.467 Sum_probs=54.9
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCC-CCCcccHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-QSLTPNTAMKDLISK 330 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-~~l~pN~~l~~~i~~ 330 (710)
.+-.+|.||||+.+++--.++ .|+|.||+.||-+-+..|+++||.|++.+.. ..|.++-..-.+|.+
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~ 107 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISK 107 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHH
Confidence 455689999999999999887 8999999999999999999999999999865 467655444444443
No 67
>PHA02926 zinc finger-like protein; Provisional
Probab=97.71 E-value=2.3e-05 Score=77.41 Aligned_cols=56 Identities=14% Similarity=0.397 Sum_probs=44.2
Q ss_pred CCCCcccccCCccccCC---------ceecCCCCccchhhHHHHhhhC-----CCCCCCCCCccCCCCCccc
Q 036199 264 IIPEVFKCPLSLRLMYD---------PVVIESGQTFERMWIQKWFEEG-----NHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~D---------PV~~~~G~ty~r~~I~~w~~~g-----~~~cP~t~~~l~~~~l~pN 321 (710)
....+..|+||++...+ ++..+|||+||..||.+|.... ..+||.|++.+. .++|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 45667899999998755 4677999999999999998742 456999998765 34454
No 68
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=2.2e-05 Score=80.31 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=47.0
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT 319 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~ 319 (710)
.+..+.|-||++-+.||--++|||-||=+||..|..+ ..-||.|++++.+..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3456999999999999999999999999999999975 34599999998887643
No 69
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.65 E-value=0.00035 Score=64.24 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=98.4
Q ss_pred ccchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
-+-+..||.=...... ++...+-|.|.+-++.|-..+.+..++...|+-|.+.+.-.++.+++.|+|||.++.|+..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3455666665543332 3577788888889999999999999999999999999999999999999999999999999
Q ss_pred cccccchhchHHhhcCc--hHHHHHHHHHHHHhc-CcchHHHHHh
Q 036199 544 IAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN-TEHARVCVVE 585 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~-~~e~r~~i~~ 585 (710)
|++++++|..+..++++ .....|+..|..|+. ....|..+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999875 457788888888887 3444566655
No 70
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0033 Score=65.52 Aligned_cols=262 Identities=16% Similarity=0.226 Sum_probs=173.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|++.++.++..|+..+..+... ..+.+.. +.-.++.+.+++.. .++ -+.|+++|.|++.+...+..++.
T Consensus 10 ~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~----~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 10 ELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD----LDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC----ccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 456777888888888888777655 3344432 34578888888865 233 56799999999888765555554
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh-------hCcHHHHHHhhcCCCH--HHHHHHHHHHHHhc
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA-------SGALASILNMLDSPNG--KFQELAIKILHNLS 535 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~-------~GaI~~LV~LL~~~~~--~~~~~A~~aL~nLs 535 (710)
. .+..++.++.++.. ....+..|.||+..+.....+.. +|.+...+...+.+-. .-....+-.+.||+
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 77777777776633 26788889999988776555442 3444444445443322 33456677888999
Q ss_pred cCcccccccccccchhc--hHHhhcCc-hH-HHHHHHHHHHHhcCcchHHHHHhhcCChHHHH-----------------
Q 036199 536 SDVDIQSHIAPSEFLPK--LVPFLKDA-TL-AVSCLVILKNMCNTEHARVCVVETSGCLPSVA----------------- 594 (710)
Q Consensus 536 ~~~en~~~iv~aG~V~~--Lv~lL~~~-~~-~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv----------------- 594 (710)
.....+..+.....++. |+.+=... .+ ..-.+++|.|.|-.......+.. . .+..|.
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e-~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-E-SINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-c-hHHHHHHHHhhcCCccccCHHHH
Confidence 98888888776654433 22222211 22 33457788887775555544443 1 122222
Q ss_pred -------HHhh-----cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhhcc
Q 036199 595 -------ELLE-----IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 595 -------~lL~-----~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~~~ 661 (710)
++|. ..++.++..-+.+|+.||.-. .-|..+...|+.|.|-++=.. .++.+++.+-.+.+.|-+-.
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLE 317 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 3332 358889999999999999987 567888899998888777444 46778888888888777643
No 71
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0051 Score=70.90 Aligned_cols=241 Identities=17% Similarity=0.259 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-------CC------
Q 036199 395 WDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-------SG------ 461 (710)
Q Consensus 395 ~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-------~k------ 461 (710)
.+.++.|+..|+.+++. +|..++ .-++++|+..|..+ ..|++....++..++++.++++ .+
T Consensus 37 ~eDRR~A~rgLKa~srk---YR~~Vg-a~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRK---YREEVG-AQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHH-HcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 56788999999998863 555544 45689999999873 4789999999999999965432 22
Q ss_pred -----CccccccchHHHHHHhccCcH--HHHHHHHHHHhc--cCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHH
Q 036199 462 -----IPYLNEDLFSLLASFLHSAAA--TEETLAILVALS--SYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKIL 531 (710)
Q Consensus 462 -----~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls--~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL 531 (710)
..|...+-|..|+..+..-+- +..|+..|.+|- ...+.+..+.. +-+|..|+++|.+.-..++-+|+-.|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 122356678888888776553 357888887765 34456666664 78899999999988888999999999
Q ss_pred HHhccCccccccccc-ccchhchHHhhcC-----c-hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhc---C
Q 036199 532 HNLSSDVDIQSHIAP-SEFLPKLVPFLKD-----A-TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEI---G 600 (710)
Q Consensus 532 ~nLs~~~en~~~iv~-aG~V~~Lv~lL~~-----~-~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~---~ 600 (710)
..|..+..+...+|. .++...|..++.+ + -+++.|+..|.||-. +..+...+.+ .+-||.|.++|.. +
T Consensus 191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-~~~i~rL~klL~~f~~~ 269 (970)
T KOG0946|consen 191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-GSYIPRLLKLLSVFEFG 269 (970)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-cccHHHHHhhcCccccc
Confidence 999988877777776 8999999999943 2 358999999999988 5566666666 7899999988863 3
Q ss_pred CH-------HHHHH---HHHHHHHHhcCC------hHHHHHHHhCCchHHHHHHhhcC
Q 036199 601 SE-------EDQEH---AVAILLCLCSQR------DQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 601 s~-------~~ke~---A~~aL~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
+. .--.+ |+-++..|-.-+ ..++.++...+++..|..++-+.
T Consensus 270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 270 DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 42 11222 233333332211 23456888899999997775544
No 72
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.52 E-value=0.0029 Score=72.79 Aligned_cols=243 Identities=12% Similarity=0.172 Sum_probs=147.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++..+.-|+..|..+. +++.. .-.++.+.++|.+ +++-+++.|+.++..+...... .+...
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~-----~~l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~~p~--~~~~~ 152 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMA-----EPLIPDVIKLLSD----PSPYVRKKAALALLKIYRKDPD--LVEDE 152 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHH-----HHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHHHCHC--CHHGG
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchh-----hHHHHHHHHHhcC----CchHHHHHHHHHHHHHhccCHH--HHHHH
Confidence 4567778888888888887765 22211 2256777777776 7889999999999998654322 11122
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHh-ccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVAL-SSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~L-s~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.++.+..+|.+.+.. .+|+.++..+ ...+.+. . .-...+..|.+++...++-.+..++..|..++........-
T Consensus 153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~ 229 (526)
T PF01602_consen 153 -LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK 229 (526)
T ss_dssp -HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH
T ss_pred -HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH
Confidence 689999999877653 4777777777 2111111 1 11233455555556778888888888888777533222100
Q ss_pred ccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH
Q 036199 545 APSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY 622 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~ 622 (710)
...++.+..++.+ +.+.-.|+.++..+...+. +.. .+++.|+.+|.+.++..+-.++..|..++...+
T Consensus 230 --~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~-- 299 (526)
T PF01602_consen 230 --NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP-- 299 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH--
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhcccc--
Confidence 4566667776643 4556667777776666544 222 356777777777777778888888877777661
Q ss_pred HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 623 CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 623 ~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
..+. .....+..+..+.+...|.+|..+|..+.+
T Consensus 300 --~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 300 --PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp --HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred --hhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 1111 222223333345666667777666665544
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.50 E-value=0.00015 Score=53.34 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=37.9
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
+++++..+++ .|+||.|+.+|.++++..+++|+++|.+||.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678899998 8999999999999999999999999999984
No 74
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0015 Score=75.51 Aligned_cols=55 Identities=22% Similarity=0.440 Sum_probs=49.7
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p 320 (710)
-.-++||.|..=.+|-|++-|||-||-.||+.-+..-+..||.|+..|.+.++.|
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3457899999999999999999999999999999988899999999998777654
No 75
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.002 Score=67.04 Aligned_cols=199 Identities=18% Similarity=0.230 Sum_probs=137.6
Q ss_pred HHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc-cccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHH
Q 036199 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL-NEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKI 503 (710)
Q Consensus 425 I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~-~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I 503 (710)
...+|.||.+ .++.++..|+.-|..+... ..+.... +...++.+.+++......+.|+.+|.|++.....+..+
T Consensus 5 l~elv~ll~~----~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHS----LSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhcc----CChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHH
Confidence 3467888877 6789999999989888443 2222221 34567888888876655578999999999999888888
Q ss_pred hhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc--c----cchhchHHhhcCch-----HHHHHHHHHHH
Q 036199 504 VASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP--S----EFLPKLVPFLKDAT-----LAVSCLVILKN 572 (710)
Q Consensus 504 ~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~--a----G~V~~Lv~lL~~~~-----~~~~al~iL~n 572 (710)
.+. .+..++.++.++.......++.+|.||+..++....+.. . .++.-|+....+.+ -..+-.-++.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 877 888888998888777788899999999988776554321 1 33444444443322 24667889999
Q ss_pred HhcCcchHHHHHhhcCChH-HHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC
Q 036199 573 MCNTEHARVCVVETSGCLP-SVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG 630 (710)
Q Consensus 573 La~~~e~r~~i~~~~g~I~-~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G 630 (710)
|+..+.||..+....-+.. .|+.+-..++.--+...+++|.|.|-.. .+...++..+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~ 216 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDES 216 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccc-hhHHHHhcch
Confidence 9999999999887332211 2222212245555778889999977665 5555555544
No 76
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.48 E-value=7.5e-05 Score=82.53 Aligned_cols=69 Identities=20% Similarity=0.422 Sum_probs=59.4
Q ss_pred CCCcccccCCccccCCcee-cCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc-cHHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP-NTAMKDLISKWCMN 334 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p-N~~l~~~i~~w~~~ 334 (710)
+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.+.+.+......| -..+++.+..|-..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 5677999999999999999 499999999999999987 889999988887776665 45788888887444
No 77
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.48 E-value=0.0019 Score=74.41 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=158.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHH-hccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~ 466 (710)
..|.+.++.++.+|+..+..+.+.+++.- ... +++.+.++|.+ .|+.++..|+.++..+ ..+.... -.-
T Consensus 121 ~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i~~~~~~~~--~~~ 190 (526)
T PF01602_consen 121 KLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSD----KDPSVVSAALSLLSEIKCNDDSYK--SLI 190 (526)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTH----SSHHHHHHHHHHHHHHHCTHHHHT--THH
T ss_pred HHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccC----CcchhHHHHHHHHHHHccCcchhh--hhH
Confidence 45677889999999999999988766532 222 78999999976 7899999999999988 1111101 112
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
...+..|.+++...+.. ...+.+|..++........- ...++.+..++.+.++.+.-.|+.++..+...+.
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----- 263 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----- 263 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----
Confidence 33444455555555553 46677777666543322210 4568888888888888888899999998886555
Q ss_pred ccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH
Q 036199 545 APSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
.-..++++|+.+|.+ ++++-.++..|..++... ...+.. ....+..+. ..+...+..|+.+|..++...
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~----~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-- 335 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFN----QSLILFFLLYDDDPSIRKKALDLLYKLANES-- 335 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGT----HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhh----hhhhhheecCCCChhHHHHHHHHHhhccccc--
Confidence 456778889999854 456777888888888754 223321 233444555 678889999999999988654
Q ss_pred HHHHHHhCCchHHHHHHh-hcCCHHHHHHHHHHHHHhh
Q 036199 622 YCKLVMNEGVIPSLVKIS-VYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~L~-~~gt~~~k~kA~~LL~~l~ 658 (710)
+... +++.|.... ..++...++.+...+..+.
T Consensus 336 n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 336 NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 3333 355665555 3345666666666555444
No 78
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.45 E-value=0.019 Score=63.17 Aligned_cols=260 Identities=13% Similarity=0.113 Sum_probs=182.4
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchH
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFS 471 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~ 471 (710)
+.+.+++..+...+|.+..+. ..-..+.+.+.--.++.-|..+ ..+...+++|...+..+..-... ..-+..|.+.
T Consensus 36 ~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~--~~~~~ER~QALkliR~~l~~~~~-~~~~~~~vvr 111 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRD--NKNDVEREQALKLIRAFLEIKKG-PKEIPRGVVR 111 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhccc--CCChHHHHHHHHHHHHHHHhcCC-cccCCHHHHH
Confidence 344666777777777777554 4455566666666677777653 23456677899999888543221 1124679999
Q ss_pred HHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccc
Q 036199 472 LLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEF 549 (710)
Q Consensus 472 ~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~ 549 (710)
.||.+..+.... ..|..+|..|+.. +-..+..+||+..|++.+-+|..+..+..+.++..+-.++..+..+...--
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~d 189 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFD 189 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCcc
Confidence 999999887653 5899999998853 234666899999999999888878888999999999988988876655333
Q ss_pred hhchHHhhcCc-----------hHHHHHHHHHHHHhcCcchHHHHHhhc-CChHHHHHHhhcCCHHHHHHHHHHHHHHh-
Q 036199 550 LPKLVPFLKDA-----------TLAVSCLVILKNMCNTEHARVCVVETS-GCLPSVAELLEIGSEEDQEHAVAILLCLC- 616 (710)
Q Consensus 550 V~~Lv~lL~~~-----------~~~~~al~iL~nLa~~~e~r~~i~~~~-g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc- 616 (710)
+..++.-+.+. +....+..++..+-.+-.|-..+.... .++..||..|...+++.++..+.+|..+-
T Consensus 190 L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 190 LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 44444444221 233445555555556666766665533 58899999999999999998888887662
Q ss_pred --------------------cC-----------------------Ch----H----HHHHHHhCCchHHHHHHhhcC-CH
Q 036199 617 --------------------SQ-----------------------RD----Q----YCKLVMNEGVIPSLVKISVYG-ND 644 (710)
Q Consensus 617 --------------------~~-----------------------~~----~----~~~~v~~~G~v~~Lv~L~~~g-t~ 644 (710)
.. .. . -...++++|.++.|+++..+. ++
T Consensus 270 ik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~ 349 (371)
T PF14664_consen 270 IKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDS 349 (371)
T ss_pred CCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCc
Confidence 00 00 0 023567899999999998887 77
Q ss_pred HHHHHHHHHHHHh
Q 036199 645 KAKVSALELRRLL 657 (710)
Q Consensus 645 ~~k~kA~~LL~~l 657 (710)
....||.-||..+
T Consensus 350 ~l~~KAtlLL~el 362 (371)
T PF14664_consen 350 SLSRKATLLLGEL 362 (371)
T ss_pred hHHHHHHHHHHHH
Confidence 8899999998844
No 79
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.44 E-value=0.0071 Score=65.54 Aligned_cols=267 Identities=14% Similarity=0.081 Sum_probs=179.7
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhcccc-CCCHHHHHHHHHHHHHHhccCCCCCcc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARD-LHDSRAQRIGCRLLLAFVSKNRSGIPY 464 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~-~~d~~~q~~A~~~L~nL~~~~~~k~~i 464 (710)
|+..|...++-.+..+...|..++..+... .+.+......++|+.... +.+++..-.++.+|..+...++.|-.+
T Consensus 119 fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 119 FLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 334455555555555666666666554432 122223333333322111 256677778888999888888888888
Q ss_pred ccccchHHHHHHhccCcH--H--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc-
Q 036199 465 LNEDLFSLLASFLHSAAA--T--EETLAILVALSSYAYFISKIVASGALASILNMLDSPN-GKFQELAIKILHNLSSDV- 538 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~--~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~-~~~~~~A~~aL~nLs~~~- 538 (710)
+.++++..++..|.+... + -...-+++-|+-++.....+...+.|+.|++++++.. ..+.+-.+.++.||....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999953221 2 3778888889988888888867899999999998765 456778889999998755
Q ss_pred ------ccccccccccchhchHHhh-----cCchHHH-------HHHHHHHHHhcCcchHHHHHh---------------
Q 036199 539 ------DIQSHIAPSEFLPKLVPFL-----KDATLAV-------SCLVILKNMCNTEHARVCVVE--------------- 585 (710)
Q Consensus 539 ------en~~~iv~aG~V~~Lv~lL-----~~~~~~~-------~al~iL~nLa~~~e~r~~i~~--------------- 585 (710)
+.+..|+..++. +-++.| +|+++.+ .--.-...|++-++...++..
T Consensus 275 ~~~~~k~~~~~mv~~~v~-k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVL-KTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred hhhHHHHHHHHHHhcCch-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 333455555544 444555 3444422 222223344444444443321
Q ss_pred ---------h-cCChHHHHHHhhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 036199 586 ---------T-SGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654 (710)
Q Consensus 586 ---------~-~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL 654 (710)
. -..+..|+++|++. +|..-..|+.=+-..-...|+-+..+.+-|+=..++.|+...++++|-.|...+
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence 0 01466888888875 577777777777777777888899999999999999999999999999999888
Q ss_pred HHh
Q 036199 655 RLL 657 (710)
Q Consensus 655 ~~l 657 (710)
+.|
T Consensus 434 Q~l 436 (442)
T KOG2759|consen 434 QKL 436 (442)
T ss_pred HHH
Confidence 754
No 80
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.013 Score=69.21 Aligned_cols=240 Identities=15% Similarity=0.245 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHccCcccchhccc----CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHH
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSLSS----TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSL 472 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I~~----~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~ 472 (710)
...-++.+|+++.+.+++--..+.+ -|..+.++.+|... .++++|.-|+.++..+..+...-..+++.|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence 3456788999999998876554443 37778888888763 6889999999988887555444445678899999
Q ss_pred HHHHhccCcH-HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcc--------------
Q 036199 473 LASFLHSAAA-TEETLAILVALSSYAYFISKIVASGALASILNMLDS-PNGKFQELAIKILHNLSS-------------- 536 (710)
Q Consensus 473 LV~lL~s~~~-~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~-~~~~~~~~A~~aL~nLs~-------------- 536 (710)
|+.+|.+..+ ++.++.+|+.|+.+.+......+.|++..+.+++.. ..++.+..|+..|..|..
T Consensus 1818 LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1818 LLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 9999987654 578999999999988877777788888777776633 233333333333333311
Q ss_pred --------------------------------------------------------------------------------
Q 036199 537 -------------------------------------------------------------------------------- 536 (710)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (710)
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence
Q ss_pred ----------------------------------------------------------CcccccccccccchhchHHhhc
Q 036199 537 ----------------------------------------------------------DVDIQSHIAPSEFLPKLVPFLK 558 (710)
Q Consensus 537 ----------------------------------------------------------~~en~~~iv~aG~V~~Lv~lL~ 558 (710)
++.-..++-..|.+|.++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 1111122222333333333331
Q ss_pred --CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHH
Q 036199 559 --DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSL 635 (710)
Q Consensus 559 --~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~L 635 (710)
...+-..|+.+|..|+.+.-+..++.. -.++..++..+...-. .---|+.+|-.+-... .+....+++.|.+|.|
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHH
Confidence 112234688999999999999999988 5677778887765322 2237888887777655 4566778899999999
Q ss_pred HHHhhc
Q 036199 636 VKISVY 641 (710)
Q Consensus 636 v~L~~~ 641 (710)
+.|+..
T Consensus 2136 L~LLd~ 2141 (2235)
T KOG1789|consen 2136 LQLLDS 2141 (2235)
T ss_pred HHHhcc
Confidence 998643
No 81
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.41 E-value=0.002 Score=70.00 Aligned_cols=235 Identities=17% Similarity=0.213 Sum_probs=155.0
Q ss_pred hcccCCcHHHHHHHhhccccCCCH--HHHHHHHHHHHHH-hccCCCCCccccccchHHHHHHhccCcH-HHHHHHHHHHh
Q 036199 418 SLSSTNFVEPLIRFLRDARDLHDS--RAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLHSAAA-TEETLAILVAL 493 (710)
Q Consensus 418 ~I~~~G~I~~LV~lL~s~~~~~d~--~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~~LV~lL~s~~~-~~~Aa~~L~~L 493 (710)
.|...|++..|++++.+ ++. .++..++.+|-.+ +..+..++.-+..|.|-.+.+ ++.+.. ....+.+|.++
T Consensus 175 ~iR~~~~lD~Llrmf~a----Pn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK-~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQA----PNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK-EREPVELARSVAGILEHM 249 (832)
T ss_pred HhhccchHHHHHHHHhC----CchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh-hcCcHHHHHHHHHHHHHH
Confidence 45667999999999987 444 4477788888877 333333332223344433332 222222 25778888888
Q ss_pred c-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cccccccccccchhchHHhhcC--chHHHHHHH
Q 036199 494 S-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD--VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLV 568 (710)
Q Consensus 494 s-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~--~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~ 568 (710)
- ..++....+++.|++..++-..+..+|....+++-||.|++.+ .+.+.+|++..+-.-|..+-.+ .-+.-+|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 7 4567888999999999998888888899999999999999864 6778899988887777776533 334667777
Q ss_pred HHHHHhcCcchHHHHHhhcCC-------------------------------hHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 569 ILKNMCNTEHARVCVVETSGC-------------------------------LPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 569 iL~nLa~~~e~r~~i~~~~g~-------------------------------I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
+.+.|+.+.|--..+.. .|. +..||-+|.+.--+ ..++++. .+|.
T Consensus 330 AV~vlat~KE~E~~Vrk-S~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~E--Aq~i~AF-~l~~ 405 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRK-SGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLE--AQCIGAF-YLCA 405 (832)
T ss_pred HHhhhhhhhhhhHHHhh-ccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhh--hhhhHHH-HHHH
Confidence 77888876655444433 222 23334444322222 2233332 3343
Q ss_pred CC-----hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 618 QR-----DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 618 ~~-----~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.. ......+-+-|++..|-++..+.+.-+-.-|...|.++-+..
T Consensus 406 EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 406 EAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 22 112355667799999999988777777788899999886543
No 82
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.40 E-value=0.00013 Score=54.67 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=35.3
Q ss_pred cccCCcccc---CCceecCCCCccchhhHHHHhhhCCCCCCCCCC
Q 036199 270 KCPLSLRLM---YDPVVIESGQTFERMWIQKWFEEGNHTCPKTKM 311 (710)
Q Consensus 270 ~CPI~~~~m---~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~ 311 (710)
.||||.+.+ ..|++++|||+||..||.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999988 468889999999999999998 45678999974
No 83
>PF05536 Neurochondrin: Neurochondrin
Probab=97.37 E-value=0.0038 Score=72.12 Aligned_cols=231 Identities=17% Similarity=0.176 Sum_probs=149.5
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHH-HHHhccCC----CCCccccccchHHHHHHhccCcH------H---HHHHHH
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLL-LAFVSKNR----SGIPYLNEDLFSLLASFLHSAAA------T---EETLAI 489 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L-~nL~~~~~----~k~~i~~~gaI~~LV~lL~s~~~------~---~~Aa~~ 489 (710)
.++..+.+|++ .+ +.++-|..+| .++..+.. .+..+.++=+.+.|-++|+++.. . .-|+++
T Consensus 6 ~l~~c~~lL~~----~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKS----AD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhcc----CC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 35566777776 45 5555555444 45544322 23345566668999999987432 1 368889
Q ss_pred HHHhccCchhhHHHhhhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcccccccccccchhchHHhhcC-chHHHHHH
Q 036199 490 LVALSSYAYFISKIVASGALASILNMLDSPNG-KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD-ATLAVSCL 567 (710)
Q Consensus 490 L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~-~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~-~~~~~~al 567 (710)
|..++..++....=--.+.||.|++++.+++. +...+|..+|..++.+++++..+++.|+|+.|.+.+.+ +...+.|+
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al 160 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIAL 160 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHH
Confidence 99999877655433335689999999987776 99999999999999999999999999999999999965 45689999
Q ss_pred HHHHHHhcCcchHHHHHhhcC----ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH-HHHHHhCC----chHHHHHH
Q 036199 568 VILKNMCNTEHARVCVVETSG----CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY-CKLVMNEG----VIPSLVKI 638 (710)
Q Consensus 568 ~iL~nLa~~~e~r~~i~~~~g----~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~-~~~v~~~G----~v~~Lv~L 638 (710)
.+|.+++..... ..+-++.. .++.|-..+.......+-.++..|..+-...+.. ........ +..-|..+
T Consensus 161 ~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 999999874332 12212122 2334444444444455556666766665444211 11122222 23445555
Q ss_pred hhcC-CHHHHHHHHHHHHHhhhc
Q 036199 639 SVYG-NDKAKVSALELRRLLRDV 660 (710)
Q Consensus 639 ~~~g-t~~~k~kA~~LL~~l~~~ 660 (710)
+++. ++..|..|..|...|-+.
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHH
Confidence 5554 666777777776655555
No 84
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00014 Score=79.55 Aligned_cols=74 Identities=26% Similarity=0.430 Sum_probs=62.5
Q ss_pred ccCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC-----CCcccHHHHHHHHHHHHHc
Q 036199 261 SRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ-----SLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 261 ~~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~-----~l~pN~~l~~~i~~w~~~~ 335 (710)
....++.+|.|-||..++.+||+++|||+||..||.+.++ ....||.|+.++... ...+|+.+..+|..++...
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456689999999999999999999999999999999877 466799999888742 2456888899999988764
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0053 Score=70.76 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=146.3
Q ss_pred ccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc--
Q 036199 467 EDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSDVD-- 539 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~~e-- 539 (710)
+.-|+.|++=+.+.. .++.|+..|..+| ..+|..++..| +++|+..|..+ |++..+.++.+++++.++++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~s--rkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFS--RKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 345777777665544 2468999998887 46787777665 89999999544 79999999999999998764
Q ss_pred ----ccc------------ccccccchhchHHhhcCc--hHHHHHHHHHHHHhc--CcchHHHHHhhcCChHHHHHHhhc
Q 036199 540 ----IQS------------HIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN--TEHARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 540 ----n~~------------~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~--~~e~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+-. .+-..+-|..|+..+..- .++..++..|.+|-+ ..+-+.++..++-||..|+.+|..
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 322 133467888888888543 568899999998865 578888998889999999999998
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHH---HHHHHHHHHHHhhh
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDK---AKVSALELRRLLRD 659 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~---~k~kA~~LL~~l~~ 659 (710)
.-.-+|-.|+-.|..|...++..++.+.=+.++..|+++..+ |..+ +-+-|..+|..|-+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 777788899999999999998888888888999999998654 3222 35667776664433
No 86
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00015 Score=79.76 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhh----CCCCCCCCCCccCCCCCcc----cHHHHHHHHHHHHHcC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE----GNHTCPKTKMKLVCQSLTP----NTAMKDLISKWCMNLC 336 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~----g~~~cP~t~~~l~~~~l~p----N~~l~~~i~~w~~~~~ 336 (710)
+.+..||||++--.=|+.+.|||.||-.||-++|.. +...||.|+..+...+|.| +..-+..++..+..||
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 348999999999999999999999999999998764 5677999999888766554 3445556777777787
No 87
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.14 E-value=0.00021 Score=74.71 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=54.9
Q ss_pred CCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCC----CCcccHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ----SLTPNTAMKDLISKW 331 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~----~l~pN~~l~~~i~~w 331 (710)
+-.+..|++|.-+|.|+-+| .|=|||||+||-++|.. ..+||.|+-.+..+ .+.++++|+.++...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 34578899999999999886 89999999999999987 78999998766544 367778888877553
No 88
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.12 E-value=0.00042 Score=57.89 Aligned_cols=39 Identities=31% Similarity=0.680 Sum_probs=31.7
Q ss_pred ccCCccccCCc-------------eecCCCCccchhhHHHHhhhCCCCCCCCC
Q 036199 271 CPLSLRLMYDP-------------VVIESGQTFERMWIQKWFEEGNHTCPKTK 310 (710)
Q Consensus 271 CPI~~~~m~DP-------------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~ 310 (710)
|+||++-|.|| +...|||.|-..||++|+.. +.+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999554 34489999999999999985 44999985
No 89
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00023 Score=72.18 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=44.8
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHH-HhhhCCCCCCCCCCccCCC
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQK-WFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~-w~~~g~~~cP~t~~~l~~~ 316 (710)
.+|.|+||++.|.+|+-++|||-||-.||-. |-.+....||.|++...+.
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 6899999999999999999999999999999 8777677799998876554
No 90
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.09 E-value=0.00062 Score=69.52 Aligned_cols=66 Identities=27% Similarity=0.436 Sum_probs=56.7
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCc-cCCCCCcccHHHHHHHHHHHHH
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMK-LVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~-l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
+.||+|.-|++.|+-+ +|||+||.+||+..+-.....||.|... +--..|+|++..+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999988 8999999999999887777889999653 2334689999999999888663
No 91
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.07 E-value=0.0011 Score=48.06 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=36.7
Q ss_pred chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 497 AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
++++..+.+.|+|++|+.+|.+++++.++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999973
No 92
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.99 E-value=0.0086 Score=68.00 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=117.8
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccccccchhchHHhhcCch--HHHHHHHHHHHHhc
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCN 575 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv~aG~V~~Lv~lL~~~~--~~~~al~iL~nLa~ 575 (710)
+|..+-+.-....+..+....|......|+-.+.+++..- .-+...-...++.+||+++.+|+ +...++++|.||..
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 3444443333444444445556666667777776666432 22223566789999999997764 57788999999987
Q ss_pred -CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCc-hHHHHHHhhcCCHHHHHHHHHH
Q 036199 576 -TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGV-IPSLVKISVYGNDKAKVSALEL 653 (710)
Q Consensus 576 -~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~-v~~Lv~L~~~gt~~~k~kA~~L 653 (710)
-..-|..+.+ .|||..|.+++.+.++..+.+++|+|.++.-+..+..+...-..+ ...++.+..+....+++.+-.|
T Consensus 449 efs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 449 EFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL 527 (678)
T ss_pred hcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 5667888888 799999999999999999999999999999888654444333333 3566778889999999999999
Q ss_pred HHHhhhc
Q 036199 654 RRLLRDV 660 (710)
Q Consensus 654 L~~l~~~ 660 (710)
||.|--.
T Consensus 528 lRNl~c~ 534 (678)
T KOG1293|consen 528 LRNLTCN 534 (678)
T ss_pred HHHhhcC
Confidence 9987644
No 93
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.87 E-value=0.007 Score=68.69 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=97.8
Q ss_pred HhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcch
Q 036199 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA 579 (710)
Q Consensus 503 I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~ 579 (710)
.....++.+||.+|..++..++..++++|+||.. ..+-+..+++.|+|+.|..++.+ .+....++++|+++.-+.+.
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 3346789999999999999999999999999986 67778899999999999999965 46788999999999985443
Q ss_pred H--HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHH
Q 036199 580 R--VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624 (710)
Q Consensus 580 r--~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~ 624 (710)
. .+... .=+-..++.+....+..+||.+...|.||.++..+...
T Consensus 495 ~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svd 540 (678)
T KOG1293|consen 495 EEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVD 540 (678)
T ss_pred HHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHH
Confidence 3 22232 22345677788889999999999999999998644333
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.76 E-value=0.00065 Score=73.03 Aligned_cols=51 Identities=29% Similarity=0.453 Sum_probs=46.4
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p 320 (710)
|.|.|++++-++||+- .+||.|||.-|++++.+ +.+||+|+++|+..+|+|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 5799999999999986 78999999999999985 667999999999888777
No 95
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.066 Score=58.48 Aligned_cols=231 Identities=16% Similarity=0.189 Sum_probs=159.7
Q ss_pred HHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-----CCC-----Cccccccch
Q 036199 401 VIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-----RSG-----IPYLNEDLF 470 (710)
Q Consensus 401 Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-----~~k-----~~i~~~gaI 470 (710)
.+.++..++. -++--..+++.++++.|+.+|.+ .+.++-...+.+|..+...+ ... ...++.+++
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgH----eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGH----ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcC----CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 3444444442 34444567888999999999988 66777777777777774322 111 122466778
Q ss_pred HHHHHHhcc--CcHH------HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-c
Q 036199 471 SLLASFLHS--AAAT------EETLAILVALS-SYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSD-V 538 (710)
Q Consensus 471 ~~LV~lL~s--~~~~------~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~-~ 538 (710)
+.||+-+.. ++.+ .++.+++.|+. ..++....+++.|.+..|+.-+... -..-+..|..+|.-+-.+ .
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 888876652 2221 36788888887 4567788888889999888855332 234567777788777664 5
Q ss_pred ccccccccccchhchHHhh-----cCc------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHH
Q 036199 539 DIQSHIAPSEFLPKLVPFL-----KDA------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEH 607 (710)
Q Consensus 539 en~~~iv~aG~V~~Lv~lL-----~~~------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~ 607 (710)
+|+...-...+|..|++-+ .+| ++.+.-...|..+-..+++|..+.. ..|++...-+++. ....+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLRE-KKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHH-HHHhhhh
Confidence 5888888999999999988 232 3455666666666678999999998 5677766666654 5566778
Q ss_pred HHHHHHHHhcCCh--HHHHHHHhCCchHHHHHH
Q 036199 608 AVAILLCLCSQRD--QYCKLVMNEGVIPSLVKI 638 (710)
Q Consensus 608 A~~aL~~Lc~~~~--~~~~~v~~~G~v~~Lv~L 638 (710)
|+.+|-....+.+ .+|...++.++...++-+
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence 9999987777775 688888888877666554
No 96
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.70 E-value=0.015 Score=63.54 Aligned_cols=223 Identities=10% Similarity=0.107 Sum_probs=154.1
Q ss_pred hhhcCCCHHH--HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCcc
Q 036199 388 SRLTELNWDC--QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~--q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i 464 (710)
..+...+.+. +.++...|.... ..+|+..++..| +..++.+-+. ...++.++..+.+|.++..+. .....+
T Consensus 187 rmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~---~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 187 RMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKE---REPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhh---cCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4445555444 455655554443 256788777766 4444444432 256888999999999997654 444556
Q ss_pred ccccchHHHHHHhccCcHH--HHHHHHHHHhcc--CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc
Q 036199 465 LNEDLFSLLASFLHSAAAT--EETLAILVALSS--YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~--~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en 540 (710)
+..|++..++-..+..... .+++-+|.|++. ....+..|++..+-..|.-+-.+.|.-.+-+|+-|.+-|+.+.+.
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~ 340 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEV 340 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhh
Confidence 7899999998888766553 689999998884 456788888888888888888888888899999999999988777
Q ss_pred cccccccc---chhchHHhh----------------------------cCchHHHHHHHHHHHHhc----CcchHHHHHh
Q 036199 541 QSHIAPSE---FLPKLVPFL----------------------------KDATLAVSCLVILKNMCN----TEHARVCVVE 585 (710)
Q Consensus 541 ~~~iv~aG---~V~~Lv~lL----------------------------~~~~~~~~al~iL~nLa~----~~e~r~~i~~ 585 (710)
-..+-+.| .|.+|+..+ .+......|+++....+. ...|+..+..
T Consensus 341 E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFs 420 (832)
T KOG3678|consen 341 EREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFS 420 (832)
T ss_pred hHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHH
Confidence 66666555 345555544 222223345665554443 4567777777
Q ss_pred hcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 586 TSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 586 ~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
.-|+|+.|-++..+.+.....-|-.+|.-+.
T Consensus 421 eIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 421 EIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 6799999999888777666666777775553
No 97
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.61 E-value=0.038 Score=53.03 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=98.0
Q ss_pred HHHhhhCcHHHHHHhhcCCC------HHHHHHHHHHHHHhccCcccccccccccchhchHHhhc----CchHHHHHHHHH
Q 036199 501 SKIVASGALASILNMLDSPN------GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK----DATLAVSCLVIL 570 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~~~~------~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~----~~~~~~~al~iL 570 (710)
..+...||+..|++++.+|+ .+....++.++..|-.+.-.-+..++...|...+..+. +..+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 34566789999999998877 36778889999998877666677888888888888883 457899999999
Q ss_pred HHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh
Q 036199 571 KNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 571 ~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
.++..+....-..+..+=-++.|+..|+.++++.+.+|++.+-+|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99999877755555546678999999999999999999999988876654
No 98
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.54 E-value=0.0023 Score=54.32 Aligned_cols=49 Identities=24% Similarity=0.370 Sum_probs=37.8
Q ss_pred CCcccccCCccccCC-ceec-CCCCccchhhHHHHhhh--CCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYD-PVVI-ESGQTFERMWIQKWFEE--GNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~D-PV~~-~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l~ 314 (710)
+.+-.||.|...=.| |++. .|||.|-.+||.+|++. ++.+||.|+++..
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 445557776665555 6555 99999999999999984 4689999998754
No 99
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.13 Score=62.17 Aligned_cols=245 Identities=16% Similarity=0.169 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhccc--CCcHHHHHHHhhcccc-----------CCC-HHHHHHHHHHHHHHhccCC
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSS--TNFVEPLIRFLRDARD-----------LHD-SRAQRIGCRLLLAFVSKNR 459 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~--~G~I~~LV~lL~s~~~-----------~~d-~~~q~~A~~~L~nL~~~~~ 459 (710)
+...+..|++-|..+++.-+...+.... .-.++.++..+....+ ..+ ..--..|..+|-.++.+=.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 5677888999888888764433332222 1223333333322100 011 1123445556666654433
Q ss_pred CCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 460 SGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 460 ~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
.+. +-.-.++.+-.+|.+.+-. ..|+.+|..++ ....+..++. ...++.++..|.++.|+++-.|+.||..++.
T Consensus 342 g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 342 GKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIA-EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred hhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 222 2344566677777887753 24444444433 2223333333 4678888888999999999999999999997
Q ss_pred C-cccccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcchHHHHHhh-cCChH-HHHHHhhcCCHHHHHHHHH
Q 036199 537 D-VDIQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEHARVCVVET-SGCLP-SVAELLEIGSEEDQEHAVA 610 (710)
Q Consensus 537 ~-~en~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~~i~~~-~g~I~-~Lv~lL~~~s~~~ke~A~~ 610 (710)
+ ......-...-.+|.|+..+.+ ..+..+|+.+|-|++..-. +..+... .+.+. .|..++.++++.+||.++.
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 4 3333333445566788888865 3567788888888775222 1222110 23344 3333555799999999999
Q ss_pred HHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC
Q 036199 611 ILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 611 aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
++.+.+...... =.=.=.-.+|.|..++.+++
T Consensus 498 aIasvA~AA~~~-F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 498 AIASVADAAQEK-FIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHhhh-hHhHHHHHHHHHHHHHhCCC
Confidence 998887544210 00001134688888877776
No 100
>PTZ00429 beta-adaptin; Provisional
Probab=96.46 E-value=0.12 Score=61.64 Aligned_cols=213 Identities=11% Similarity=0.088 Sum_probs=131.5
Q ss_pred HHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhh
Q 036199 429 IRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVAS 506 (710)
Q Consensus 429 V~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~ 506 (710)
++.|..+..+.|+.++-.|+..|.++- ..-+-.-.++.+.+.|.+.+. ++.|+-++..+-... ...+.+.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--pelv~~~ 178 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIR------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--MQLFYQQ 178 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--ccccccc
Confidence 344444444478888888888887651 111223455666777776665 457777777765322 2344467
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC-chH-HHHHHHHHHHHhc-CcchHHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD-ATL-AVSCLVILKNMCN-TEHARVCV 583 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~-~~~-~~~al~iL~nLa~-~~e~r~~i 583 (710)
|.++.|.++|.+.++.++.+|+.+|+.+........ -...+.+..|+..|.+ .++ +-..+.+ |+. .+......
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~l---L~~y~P~~~~e~ 254 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILEL---LAAQRPSDKESA 254 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHH---HHhcCCCCcHHH
Confidence 889999999999999999999999999985433221 1234556666666643 232 4444444 444 23222222
Q ss_pred HhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHH-HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 584 VETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQY-CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 584 ~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~-~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
...+..+...|++.++.+.-.|+.+++.+.... +.. ...+.+ +.++|+.|+ ++.+..|--+..-|..+..
T Consensus 255 ---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r--l~~pLv~L~-ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 255 ---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVR--VNTALLTLS-RRDAETQYIVCKNIHALLV 326 (746)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH--HHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence 135677777888889999999999999887653 221 111111 236677774 5667777777766655544
No 101
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.33 E-value=0.0084 Score=43.31 Aligned_cols=40 Identities=35% Similarity=0.451 Sum_probs=35.7
Q ss_pred cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
++++..+.+ .|+++.|+.+|..+++..++.|+++|.+|+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 346778888 7999999999999999999999999999873
No 102
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.32 E-value=0.18 Score=55.01 Aligned_cols=216 Identities=13% Similarity=0.174 Sum_probs=156.2
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc-------ccchHHHHHHhccCcHH--HHHHHHHHHh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN-------EDLFSLLASFLHSAAAT--EETLAILVAL 493 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~-------~gaI~~LV~lL~s~~~~--~~Aa~~L~~L 493 (710)
-.+..++.+|+.. ...+..+.....+-.+.+.+..+..+.+ .-.-+..+.+|..++.- +.+..++..+
T Consensus 65 ~~v~~fi~LlS~~---~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 65 QYVKTFINLLSHI---DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHHhchh---hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4577788888752 3345666677777777665555444331 22356677888777653 3477888777
Q ss_pred ccCchhhHHHhhhCc-HHHHHHhhcC-CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc-C---chHHHHHH
Q 036199 494 SSYAYFISKIVASGA-LASILNMLDS-PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK-D---ATLAVSCL 567 (710)
Q Consensus 494 s~~~~nk~~I~~~Ga-I~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~-~---~~~~~~al 567 (710)
+.....+...++-.. ...|-..+.+ .+++...-|+++|..+...++.+..++.+.++..|+..+. . -.++-..+
T Consensus 142 a~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 142 ACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 765554444333222 3344455555 5678888999999999999999999999999999999993 3 24678889
Q ss_pred HHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCCh------HHHHHHHhCCchHHHHHHhh
Q 036199 568 VILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRD------QYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 568 ~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~------~~~~~v~~~G~v~~Lv~L~~ 640 (710)
-.++.|.-++...+.+.. -+.|+.|+++++. ...++-.-.++++.|++..++ .....|+..++.+.+-.|..
T Consensus 222 fciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 999999999888877744 7899999999986 466677788999999998884 45677888888888877765
Q ss_pred cC
Q 036199 641 YG 642 (710)
Q Consensus 641 ~g 642 (710)
.+
T Consensus 301 rk 302 (442)
T KOG2759|consen 301 RK 302 (442)
T ss_pred cC
Confidence 54
No 103
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.25 E-value=0.21 Score=54.07 Aligned_cols=188 Identities=19% Similarity=0.193 Sum_probs=118.5
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFI 500 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk 500 (710)
-.++.++++|.+ .+..++..|+..+..+ -...+++.+..+|.+.+.. ..|+.+|.
T Consensus 43 ~~~~~~~~~l~~----~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg--------- 99 (335)
T COG1413 43 EAADELLKLLED----EDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALG--------- 99 (335)
T ss_pred hhHHHHHHHHcC----CCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHH---------
Confidence 467888888877 5777887887775544 2456889999999988763 34444332
Q ss_pred HHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHH-HHhc---
Q 036199 501 SKIVASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILK-NMCN--- 575 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~-nLa~--- 575 (710)
.++...++++|+.+|. +++..++..|+.+|..+- ...++.+|+..+.+..... +...+. .+..
T Consensus 100 -~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~ 167 (335)
T COG1413 100 -ELGDPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS-AAAALDAALLDVRA 167 (335)
T ss_pred -ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh-hhhhccchHHHHHH
Confidence 2234568999999998 588999999999998876 3344788888886644211 111110 0000
Q ss_pred -CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 036199 576 -TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654 (710)
Q Consensus 576 -~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL 654 (710)
..+....+.. ...++.+...+...+..++..|+.+|..+...+ ..+.+.++....+.+...+.++...|
T Consensus 168 ~a~~~l~~~~~-~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 168 AAAEALGELGD-PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHHcCC-hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 0001111222 456888888998888899999999998887774 12234444444444444444444433
Q ss_pred H
Q 036199 655 R 655 (710)
Q Consensus 655 ~ 655 (710)
.
T Consensus 238 ~ 238 (335)
T COG1413 238 G 238 (335)
T ss_pred c
Confidence 3
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.24 E-value=0.074 Score=60.17 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccC-CCHHHHHHHHHHHHHH-hccCCCC-Ccccccc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDL-HDSRAQRIGCRLLLAF-VSKNRSG-IPYLNED 468 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~-~d~~~q~~A~~~L~nL-~~~~~~k-~~i~~~g 468 (710)
..++++..+|++.|.+..-.++..|..+++.|+.+.++..|+...++ .+.+.+-....+|+-+ +.....+ ..+-+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34678889999999999999999999999999999999999874221 2456666666666655 3333333 3333568
Q ss_pred chHHHHHHhcc--------C--------cHH---HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC---------CC
Q 036199 469 LFSLLASFLHS--------A--------AAT---EETLAILVALSSYAYFISKIVASGALASILNMLDS---------PN 520 (710)
Q Consensus 469 aI~~LV~lL~s--------~--------~~~---~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~---------~~ 520 (710)
++..|+..|.. . ... ..++.+++|+...-.....--..+.++.|+.+|.. ..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888877641 0 011 36888999997543332221234556666665431 12
Q ss_pred HHHHHHHHHHHHHhccC-ccc-------c----cccccccchhchHHhhcC-------c---hHHHHHHHHHHHHhcC-c
Q 036199 521 GKFQELAIKILHNLSSD-VDI-------Q----SHIAPSEFLPKLVPFLKD-------A---TLAVSCLVILKNMCNT-E 577 (710)
Q Consensus 521 ~~~~~~A~~aL~nLs~~-~en-------~----~~iv~aG~V~~Lv~lL~~-------~---~~~~~al~iL~nLa~~-~ 577 (710)
.....+++.+|.|+-.. .+. . ..-....+|..|+.+|.. . +...-.+.+|..++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 46678888999888321 111 1 112345577888888721 1 2345567788888875 5
Q ss_pred chHHHHHh---------------hcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCc
Q 036199 578 HARVCVVE---------------TSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGV 631 (710)
Q Consensus 578 e~r~~i~~---------------~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~ 631 (710)
..|..+.. ....-..|++++.+..+..+..+...|+.||..+.. +.+...|.
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~--~~v~~~Gy 349 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS--RFVKYVGY 349 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH--HHHHHcCc
Confidence 55555543 123446788888887799999999999999988754 44444443
No 105
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.067 Score=59.65 Aligned_cols=253 Identities=16% Similarity=0.132 Sum_probs=162.2
Q ss_pred HHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh-ccCCCCCccccccchHHHHHHhccC
Q 036199 402 IEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV-SKNRSGIPYLNEDLFSLLASFLHSA 480 (710)
Q Consensus 402 l~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~-~~~~~k~~i~~~gaI~~LV~lL~s~ 480 (710)
+.-|..+++.-.--|.-+....+.+.|+.+|+. ++..+.--++..+.|+. .-+.-+..+++.|.|..|+.++.+.
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~----Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN----PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcC----ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 344556655545556677788899999999976 44444445566677763 3334456677899999999999876
Q ss_pred cH--HHHHHHHHHHhccCc--hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC----cccccccccccchh-
Q 036199 481 AA--TEETLAILVALSSYA--YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD----VDIQSHIAPSEFLP- 551 (710)
Q Consensus 481 ~~--~~~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~----~en~~~iv~aG~V~- 551 (710)
+. +.+..|+|+.|--+. .-+-...+.-++..++++.+++.-.++......|.|+..+ ++.+....++.--.
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 55 368899999887433 3344555667789999999999899999999999999863 22344344433323
Q ss_pred ---chHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHh-hcCChHHHHHHhhc--------------------------
Q 036199 552 ---KLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVE-TSGCLPSVAELLEI-------------------------- 599 (710)
Q Consensus 552 ---~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~-~~g~I~~Lv~lL~~-------------------------- 599 (710)
.|++.+. ++-.....+-+|-++|.+++....++. ....+..+-++|..
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 3344442 343355557777777776665554432 22333333333310
Q ss_pred ---------------------------CCHHHHHHHHHHHHHHhcC---C------hHHHHHHHhCCchHHHHHHhhcCC
Q 036199 600 ---------------------------GSEEDQEHAVAILLCLCSQ---R------DQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 600 ---------------------------~s~~~ke~A~~aL~~Lc~~---~------~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
.+.+.--...|+..++... . .+.++.+.+.|.-+-|+.++...+
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 0111122223332232211 1 145677778899899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 036199 644 DKAKVSALELRRLLR 658 (710)
Q Consensus 644 ~~~k~kA~~LL~~l~ 658 (710)
+.+++++..+|.+++
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999876
No 106
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.19 E-value=0.36 Score=53.89 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=37.7
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.++.|..+++. +.+++.++.+|-.+-. ..+++.|+..+.+.. .++.|...++.+...+
T Consensus 241 a~~~L~~ll~d--~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 241 AQAWLRELLQA--AATRREALRAVGLVGD-----------VEAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHHhcC--hhhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 45555555544 3366666666654432 235788888776554 8889999999887654
No 107
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.19 E-value=0.031 Score=57.01 Aligned_cols=179 Identities=17% Similarity=0.232 Sum_probs=104.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHccC--cccchhccc--CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 390 LTELNWDCQCKVIEDYETRLEHD--NQVSHSLSS--TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~~Lak~~--~~~r~~I~~--~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
-.+.+|+.+.+|+..|+.+.+.+ ......+.. ...+..++..+.+ ....+...|+.++..++..-.......
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 35678999999999999999887 222222211 1344555555544 456778888888888865332222222
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-ccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-IQS 542 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e-n~~ 542 (710)
-...+|.|+..+.++.. .+.|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... +..
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 45678888888887764 367777777776433211111 15666777788999999999999998876444 333
Q ss_pred cccccc----chhchHHhhcC--chHHHHHHHHHHHHhcC
Q 036199 543 HIAPSE----FLPKLVPFLKD--ATLAVSCLVILKNMCNT 576 (710)
Q Consensus 543 ~iv~aG----~V~~Lv~lL~~--~~~~~~al~iL~nLa~~ 576 (710)
.+-..+ .++.+...+.| +++++.|-.++..+..+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 343333 56667777766 46788888888888653
No 108
>PTZ00429 beta-adaptin; Provisional
Probab=96.15 E-value=0.9 Score=54.50 Aligned_cols=241 Identities=10% Similarity=0.086 Sum_probs=152.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+...+..|++.+-...-.+.+. ....+.+++++.+ .|.+.++..-..|.+.+....... -
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S----~d~elKKLvYLYL~~ya~~~pela----l 104 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS----TDLELKKLVYLYVLSTARLQPEKA----L 104 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccChHHH----H
Confidence 5677777777888888776554333221 2245566777766 688888888888887754322111 1
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
=++..+.+=|.+++.. ..|+.+|.++-. ++.- .-.++++.+.|.+.++-+++.|+.++.++-.... ..+.
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~ 176 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFY 176 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cccc
Confidence 2466666666666653 466666655432 1111 1246777888889999999999999999864322 3445
Q ss_pred cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHH
Q 036199 546 PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
+.|.++.|.++|.| +.++..|+.+|..+......+-.+. .+.+..|+..|...+++.|-..+.+|....-.+..
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~-- 252 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE-- 252 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH--
Confidence 67899999999965 5679999999999986433332222 23467777777777899988877777442211111
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 624 KLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
.. ..++..+...+++.++-+.-.|.+++-.+
T Consensus 253 -e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 253 -SA--ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred -HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 11 23445555555666666665555554444
No 109
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0025 Score=65.86 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=44.1
Q ss_pred cccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 270 KCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 270 ~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
.||||..-|.-||.+.|+|.||..||+--+..+..+||+|++++++..
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 499999999999999999999999999977778889999999998753
No 110
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.13 E-value=0.023 Score=50.43 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHh--hcCCHHHHHHHHHHHHHHhcCChHHHHHHHhC
Q 036199 563 AVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELL--EIGSEEDQEHAVAILLCLCSQRDQYCKLVMNE 629 (710)
Q Consensus 563 ~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL--~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~ 629 (710)
....+.+|+||+. ++..+..+.+ .||||.++..- ...+|-.+|+|+.++.+||.++++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999997 7888888888 78899999854 45799999999999999999999888877654
No 111
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.38 Score=58.41 Aligned_cols=260 Identities=15% Similarity=0.154 Sum_probs=152.6
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccch-hcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC---CCCcccc
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSH-SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR---SGIPYLN 466 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~-~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~---~k~~i~~ 466 (710)
..++.+.-..+++.+-.++...+..-. .+ ...|..-..+-++ .+-+..++..|+..|..++.... .+..-..
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n--~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKN--KELENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhc--ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 344555556677777766655443211 11 1123333333333 23467788888888888765521 1211123
Q ss_pred ccchHHHHHHhccCcH------------------HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHH
Q 036199 467 EDLFSLLASFLHSAAA------------------TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAI 528 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~------------------~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~ 528 (710)
.-.++.+..++..... ...|..+|-.|+..=..+. +-.-.++.+-.+|.+.+..-+..|+
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3345555555431110 1245666655553211111 1122345555677899999999999
Q ss_pred HHHHHhccCccccccccc---ccchhchHHhhcC--chHHHHHHHHHHHHhcC--cchHHHHHhhcCChHHHHHHhhc-C
Q 036199 529 KILHNLSSDVDIQSHIAP---SEFLPKLVPFLKD--ATLAVSCLVILKNMCNT--EHARVCVVETSGCLPSVAELLEI-G 600 (710)
Q Consensus 529 ~aL~nLs~~~en~~~iv~---aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~--~e~r~~i~~~~g~I~~Lv~lL~~-~ 600 (710)
.||..++ +++...+. ..+++..+..|.| +.++-.|+.++..++.+ ++-...- +.-.++.|+..+.+ +
T Consensus 370 ~Als~i~---EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~--~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 370 LALSVIA---EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH--HERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHH---cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH--HHhccHHHHHHhcccC
Confidence 9888777 33333322 2344455555666 46788999999999984 3333332 24677889988886 7
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchH-HHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIP-SLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 601 s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~-~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+++++.+|+.+|.++....+...-.=.=.|++. .|..|..++++.+|+.|...|.-.....
T Consensus 445 ~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999998877643211111124444 5566788999999999998887555443
No 112
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.01 E-value=0.018 Score=49.05 Aligned_cols=83 Identities=24% Similarity=0.420 Sum_probs=65.3
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHh
Q 036199 509 LASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVE 585 (710)
Q Consensus 509 I~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~ 585 (710)
||.|++.| .++++.++..|+.+|.++- ...+++.|+.++.++ .++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 68999999 8889999999999998442 336799999999664 56888888888762 2
Q ss_pred hcCChHHHHHHhhcC-CHHHHHHHHHHH
Q 036199 586 TSGCLPSVAELLEIG-SEEDQEHAVAIL 612 (710)
Q Consensus 586 ~~g~I~~Lv~lL~~~-s~~~ke~A~~aL 612 (710)
...++.|.+++... +...+..|+.+|
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 45789999999875 556688888877
No 113
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.91 E-value=0.18 Score=55.65 Aligned_cols=253 Identities=16% Similarity=0.141 Sum_probs=162.7
Q ss_pred HHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH
Q 036199 403 EDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA 482 (710)
Q Consensus 403 ~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~ 482 (710)
..+-.+.+..++-+..+.-.-+.+.+..++-+ ++.+++..|..++..+..+...-..+.+.+.--.++.-|..+..
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~----~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLS----DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC
Confidence 34555666666666555555566666654433 35778878888888887766554444555666666777765442
Q ss_pred ----HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc
Q 036199 483 ----TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK 558 (710)
Q Consensus 483 ----~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~ 558 (710)
++.|...++.+.....+... .-.|.+..||.+....+...+..|+.+|+.|+..+ -..++++||+..|++.+-
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALI 157 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHH
Confidence 25888888766644332222 24678999999999889999999999999999632 234668999999999996
Q ss_pred Cc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-------CCH--HHHHHHHHHHHHHhcCChHHHHHHH
Q 036199 559 DA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-------GSE--EDQEHAVAILLCLCSQRDQYCKLVM 627 (710)
Q Consensus 559 ~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-------~s~--~~ke~A~~aL~~Lc~~~~~~~~~v~ 627 (710)
++ .+.+.++.++-.+-.++..|..+.. .--+..++.-... ++. +.-..+..++..+-..=+.....-.
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 64 5678888999999999999987765 2334444443321 122 1222333333322211111111111
Q ss_pred h-CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCC
Q 036199 628 N-EGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 628 ~-~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
. ..++..|++.+.-.+++.|+....++.-+=+....
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 1 24678899999999999999999988755555444
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.77 E-value=0.44 Score=53.96 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=161.0
Q ss_pred HHHHHHHHccCcccchhcccCCcHHHHHHHh------hccccCCCHHHHHHHHHHHHHH-hccCCCCCccccccchHHHH
Q 036199 402 IEDYETRLEHDNQVSHSLSSTNFVEPLIRFL------RDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLA 474 (710)
Q Consensus 402 l~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL------~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~~LV 474 (710)
+..||.+..+ +.+..-+....++..|.++= .......+..+...|..+|.|+ ..+...+...++.|..+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4455555543 33444455555555555544 0012346789999999999998 45556677778899999999
Q ss_pred HHhccCc-----HH--HHHHHHHHHhc-cCchhhHHHhh-hCcHHHHHHhhc----------C-------CCHHHHHHHH
Q 036199 475 SFLHSAA-----AT--EETLAILVALS-SYAYFISKIVA-SGALASILNMLD----------S-------PNGKFQELAI 528 (710)
Q Consensus 475 ~lL~s~~-----~~--~~Aa~~L~~Ls-~~~~nk~~I~~-~GaI~~LV~LL~----------~-------~~~~~~~~A~ 528 (710)
..|+... .. --...+|+-++ .....+..+.+ .+++..|+..|. . .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 9998762 21 26778887776 45566666664 678888777662 1 1345677889
Q ss_pred HHHHHhccCcccccccccccchhchHHhhc--------Cc---hHHHHHHHHHHHHhc-Ccch-------HHHH---Hhh
Q 036199 529 KILHNLSSDVDIQSHIAPSEFLPKLVPFLK--------DA---TLAVSCLVILKNMCN-TEHA-------RVCV---VET 586 (710)
Q Consensus 529 ~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--------~~---~~~~~al~iL~nLa~-~~e~-------r~~i---~~~ 586 (710)
+++||+..+......-...+.++.|+.+|. +. .....++.+|.|+-- +.+. ...+ ...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 999999865443332234566666666642 11 346667777777722 1111 0001 111
Q ss_pred cCChHHHHHHhhc----CC----HHHHHHHHHHHHHHhcCChHHHHHHHh----------------CCchHHHHHHhhcC
Q 036199 587 SGCLPSVAELLEI----GS----EEDQEHAVAILLCLCSQRDQYCKLVMN----------------EGVIPSLVKISVYG 642 (710)
Q Consensus 587 ~g~I~~Lv~lL~~----~s----~~~ke~A~~aL~~Lc~~~~~~~~~v~~----------------~G~v~~Lv~L~~~g 642 (710)
...+..|+.+|.. .. .+.-..-+.+|..+|..+...++.+.. ...-..|+.|+.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2346777777763 11 234456677788888876555554443 22345788888888
Q ss_pred CHHHHHHHHHHHHHhhhcc
Q 036199 643 NDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 643 t~~~k~kA~~LL~~l~~~~ 661 (710)
.+..|..+..+|..|++.+
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999998887543
No 115
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.74 E-value=0.055 Score=46.06 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=64.0
Q ss_pred HHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHH
Q 036199 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISK 502 (710)
Q Consensus 425 I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~ 502 (710)
|+.|++.|.++ .++.++..++.+|..+ ....+++.|+.++++++.. ..|+.+|..+
T Consensus 1 i~~L~~~l~~~---~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i--------- 58 (88)
T PF13646_consen 1 IPALLQLLQND---PDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI--------- 58 (88)
T ss_dssp HHHHHHHHHTS---SSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHhcC---CCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh---------
Confidence 67899988432 7899999999998833 2457899999999887763 5777777655
Q ss_pred HhhhCcHHHHHHhhcCC-CHHHHHHHHHHH
Q 036199 503 IVASGALASILNMLDSP-NGKFQELAIKIL 531 (710)
Q Consensus 503 I~~~GaI~~LV~LL~~~-~~~~~~~A~~aL 531 (710)
+...+++.|++++.++ +..++..|+.+|
T Consensus 59 -~~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 -GDPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 4556899999999765 455688888877
No 116
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0041 Score=72.02 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=42.2
Q ss_pred CCCcccccCCccccCC-----ceecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 265 IPEVFKCPLSLRLMYD-----PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D-----PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
...+-.|+||.|.|.. |-.++|||.|...|++.|++. ..+||.|+..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 3457789999999999 788999999999999999997 67999998743
No 117
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0054 Score=63.26 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=43.5
Q ss_pred ccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHH
Q 036199 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMK 325 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~ 325 (710)
|-|=||.+.+.+||++.|||+||..|--+-+..| ..|++|++.... ...+-..|.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~ 296 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELL 296 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHH
Confidence 8899999999999999999999999988888754 479999886433 333433333
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.61 E-value=0.072 Score=54.30 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=91.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVV 584 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~ 584 (710)
..+..++..+.+....+...|+.++..|+..-.+.-.-.-...+|.|++.+.++ -+.+.|..+|..++.+-.....+.
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~ 132 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL 132 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 445666677766666777888888888886444432223355788899988764 468888888888887533111111
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHh----CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN----EGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~----~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++.+...+.+.++..+..++..|..+....+.....+.. ..+++.+..++.++++.+|+.|..++..|.++
T Consensus 133 -----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 133 -----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555677789999999999988876655411122222 34677888889999999999999999988665
No 119
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0092 Score=63.94 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=39.6
Q ss_pred ccccCCccccCC--c-eecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLMYD--P-VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m~D--P-V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+.|-||+|-+.+ - ++++|+|.|-..||..|+.+..++||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 899999998864 3 467999999999999999987778999998543
No 120
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.46 E-value=0.011 Score=62.01 Aligned_cols=65 Identities=15% Similarity=0.332 Sum_probs=47.7
Q ss_pred CCCcccccCCccccCC--c-eec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc----cHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYD--P-VVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP----NTAMKDLISKW 331 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D--P-V~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p----N~~l~~~i~~w 331 (710)
-...|.||||+..|.. + |.+ +|||.|...+|++-- ....||.|++++...+++| +-.+..+.+.|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 3567999999999954 2 333 999999999999873 3457999999999877553 22444444444
No 121
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.28 E-value=0.68 Score=51.74 Aligned_cols=150 Identities=15% Similarity=0.054 Sum_probs=101.1
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchh
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYF 499 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~n 499 (710)
..+++.++..|..+ .+.++...++.++... + ...++..|+..|.+... ...++.+|.
T Consensus 53 ~~a~~~L~~aL~~d---~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg-------- 111 (410)
T TIGR02270 53 KAATELLVSALAEA---DEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAGPEGLCAGIQAALG-------- 111 (410)
T ss_pred HhHHHHHHHHHhhC---CChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHh--------
Confidence 34678888888542 4455555444444321 1 12248889999887654 235555553
Q ss_pred hHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCc
Q 036199 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTE 577 (710)
Q Consensus 500 k~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~ 577 (710)
.|...++.+.|+.+|.+.++.++..++.++.. ......++|+.+|.+ +.+...|+.+|..|-.
T Consensus 112 --~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 112 --WLGGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR-- 176 (410)
T ss_pred --cCCchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence 24556778899999998899888888877765 123356788888855 4567888888877642
Q ss_pred chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 578 e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
..+++.|...+...++.++..|+.+|..+-
T Consensus 177 ---------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ---------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 356777888888889999999998886663
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.0095 Score=59.72 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=32.1
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhh
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE 300 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~ 300 (710)
|-+.=+|.+|++..+|||+.+.||-|||+||.++|-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 444558999999999999999999999999999874
No 123
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.013 Score=61.34 Aligned_cols=55 Identities=25% Similarity=0.374 Sum_probs=45.9
Q ss_pred ccccCCCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 259 NLSRAIIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 259 ~~~~~~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+......|+.=.||+|+.--.+|-++ .+|..||-.||-.+.. .+.+||+|+.|..
T Consensus 291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 33455667789999999999999877 5599999999999998 5778999988754
No 124
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.023 Score=58.12 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=41.6
Q ss_pred CCCcccccCCccccCCceecC-CCCccchhhHHHHhh-hCCCCCCCCCCccC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFE-EGNHTCPKTKMKLV 314 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~-~g~~~cP~t~~~l~ 314 (710)
-..+-.||+|++-=.-|.++. |||.||.-||..-+. ....+||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345678999999999999885 999999999999754 34679999987654
No 125
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.58 Score=52.84 Aligned_cols=188 Identities=14% Similarity=0.178 Sum_probs=127.6
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH---HHHHH---HHHHhcc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT---EETLA---ILVALSS 495 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~---~~Aa~---~L~~Ls~ 495 (710)
...++.+|.-+.+ +++..|..|+..|..+..-...-....-.|++..+..++.+.... +.|.. .|..+..
T Consensus 249 ~~~i~vlv~~l~s----s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 249 DDMINVLVPHLQS----SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ccchhhccccccC----CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 3456777777766 789999999999999865433333333567777777776654331 22211 2333444
Q ss_pred CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHH
Q 036199 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNM 573 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nL 573 (710)
.+..+..|--...|..|...+.++..+++-.++.-+..|-....|..........+.|+.-|+| .++...++.+|+++
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i 404 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI 404 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 4443433322335777888888889999999999998888888888888888999999999976 46799999999999
Q ss_pred hcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 574 a~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
|..++...- . ..+..|+++......-....+.-+...||.
T Consensus 405 ~~s~~~~~~-~---~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 405 CSSSNSPNL-R---KFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCcccccH-H---HHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 997765522 1 124445555555444456667777777775
No 126
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.88 E-value=0.085 Score=52.61 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHhccCccccccccc----------------ccchhchHHhhcC--------chHHHHHHHHHHHH
Q 036199 518 SPNGKFQELAIKILHNLSSDVDIQSHIAP----------------SEFLPKLVPFLKD--------ATLAVSCLVILKNM 573 (710)
Q Consensus 518 ~~~~~~~~~A~~aL~nLs~~~en~~~iv~----------------aG~V~~Lv~lL~~--------~~~~~~al~iL~nL 573 (710)
+.+......++..|.||+..++.+..+.+ ..++..|++.+.. .+-.+....+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 33444566788888899887777764432 2366777777733 23478889999999
Q ss_pred hcCcchHHHHHhhc-CC--hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHh--CCchHHHHHHhh
Q 036199 574 CNTEHARVCVVETS-GC--LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN--EGVIPSLVKISV 640 (710)
Q Consensus 574 a~~~e~r~~i~~~~-g~--I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~--~G~v~~Lv~L~~ 640 (710)
+..++||..+.+.. +. |..|+-.+.+.|..-+.-+++++.|+|-....+..++-. .+++|.|+.-+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999998643 33 567777777788888999999999988777444333333 366777755544
No 127
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.019 Score=57.67 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=46.7
Q ss_pred CcccccCCccccCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 267 EVFKCPLSLRLMYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
..|.||+|.+.+.+-+ .-+|||.++..|.++.+. +...||+|+.++...++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 5699999999998864 349999999999999987 56689999999999888773
No 128
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.46 Score=54.19 Aligned_cols=226 Identities=16% Similarity=0.167 Sum_probs=141.3
Q ss_pred ccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh---ccCCCCCccccccchHHHHHHhccC--cHHHHHHHHHHHhc
Q 036199 420 SSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV---SKNRSGIPYLNEDLFSLLASFLHSA--AATEETLAILVALS 494 (710)
Q Consensus 420 ~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~---~~~~~k~~i~~~gaI~~LV~lL~s~--~~~~~Aa~~L~~Ls 494 (710)
.+++.++.+..+|.+- .+....++..|..+...+. .....|. .+|.++.-+... .+...++..|..++
T Consensus 210 ~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~------llpsll~~l~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKL------LLPSLLGSLLEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhH------hhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5677888888888653 2245566666655555542 2222222 233333333222 12257777888777
Q ss_pred cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCch-HHHHHHHHHHHH
Q 036199 495 SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT-LAVSCLVILKNM 573 (710)
Q Consensus 495 ~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~-~~~~al~iL~nL 573 (710)
....-......+.+||.|.+.|.+-.+++++.+..+|.+++.--+|..- .-.+|.|++.+.++. -+..|+..|..-
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e~~~~L~~t 359 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPECLDSLGAT 359 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHHHHHhhcce
Confidence 6665555666789999999999999999999999999999986666541 235788888888876 456665554432
Q ss_pred hcCcchHHHHHhhcCChHHHHHHhhc----CCHHHHHHHHHHHHHHhcCChHHHHHH-HhCCchHHHHHHhhcCCHHHHH
Q 036199 574 CNTEHARVCVVETSGCLPSVAELLEI----GSEEDQEHAVAILLCLCSQRDQYCKLV-MNEGVIPSLVKISVYGNDKAKV 648 (710)
Q Consensus 574 a~~~e~r~~i~~~~g~I~~Lv~lL~~----~s~~~ke~A~~aL~~Lc~~~~~~~~~v-~~~G~v~~Lv~L~~~gt~~~k~ 648 (710)
.-.. .++ +-.+..++-+|.. .+...+..++.+..|+|..-++...+. .=.-.+|-|-..+.+.-|.+|.
T Consensus 360 tFV~-----~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 360 TFVA-----EVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRA 433 (569)
T ss_pred eeee-----eec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHH
Confidence 2211 122 2345555555554 466778899999999998662211111 1122455565566666899998
Q ss_pred HHHHHH-HHhhhcc
Q 036199 649 SALELR-RLLRDVA 661 (710)
Q Consensus 649 kA~~LL-~~l~~~~ 661 (710)
-|...| .++++..
T Consensus 434 vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 434 VAARALGALLERLG 447 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 888888 4444443
No 129
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.78 E-value=0.012 Score=64.79 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=41.9
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHhh----hCCCCCCCCCCccCC
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE----EGNHTCPKTKMKLVC 315 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~----~g~~~cP~t~~~l~~ 315 (710)
.+-.|-+|.+.-.||+...|.|+|||-||.++.. ..+-|||.|...|+-
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 4578999999999999999999999999999854 235789999877653
No 130
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.6 Score=52.73 Aligned_cols=269 Identities=14% Similarity=0.089 Sum_probs=167.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccch-hcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSH-SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~-~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
.++...+......+++-+-.+.++-...+. .+.-.++||.|-+-+.. .++.++..-+..|..+-+-..-...-.-
T Consensus 131 ~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~----~n~~tR~flv~Wl~~Lds~P~~~m~~yl 206 (675)
T KOG0212|consen 131 CKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYV----INPMTRQFLVSWLYVLDSVPDLEMISYL 206 (675)
T ss_pred HHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCcHHHHhcc
Confidence 344444433444555555555554322222 22223444444444433 5778887777777777443332222224
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
...++.|..+|..++.. ..+-.+|.++-..=.++....+ ...++.||.-+.+..+..+..|+.-|.....-..+...
T Consensus 207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 56788889999877653 2333333322211112222222 35688999999999999999999999988877766666
Q ss_pred cccccchhchHHhhcCc-h--HHHHHH---HHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 544 IAPSEFLPKLVPFLKDA-T--LAVSCL---VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~~-~--~~~~al---~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
..-+|++..+++.+.+. . +.+.+. ..|..+.+.+.....+-- ...|..|.+.+.....++|-.++.-+..|-.
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 66788888888888653 2 233222 234445555555544322 3457788888888888888888877777665
Q ss_pred CChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 618 QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 618 ~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
.. .+...+....+.+.|+.-+.+.++.+-..+..++..+....+
T Consensus 366 ~~-p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 366 KA-PGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred hC-cchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 55 344556667788888888889999999999999887765543
No 131
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.41 E-value=3.2 Score=44.78 Aligned_cols=175 Identities=18% Similarity=0.172 Sum_probs=113.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
.+.+.++..+..|+..+..+ ...-+++.+..+|.+ .+..++..|+.+|..+ -...
T Consensus 51 ~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d----~~~~vr~~a~~aLg~~----------~~~~ 105 (335)
T COG1413 51 LLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSD----EDPRVRDAAADALGEL----------GDPE 105 (335)
T ss_pred HHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcC----CCHHHHHHHHHHHHcc----------CChh
Confidence 34444556666665553322 234578889999987 6788999999977765 3456
Q ss_pred chHHHHHHhcc-CcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHH------------HHHHHHHHHHH
Q 036199 469 LFSLLASFLHS-AAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGK------------FQELAIKILHN 533 (710)
Q Consensus 469 aI~~LV~lL~s-~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~------------~~~~A~~aL~n 533 (710)
+++.|+..|.. ++. +..|+.+|..+- ...++.+|+.++.+.... .+..++.+|..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 88999999984 554 357777776543 344588899998776532 33334444433
Q ss_pred hccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 534 LSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 534 Ls~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
+- ....++.|..++.+. .++..|...|..+.... ....+.++..+...+...+..++.+
T Consensus 176 ~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~ 236 (335)
T COG1413 176 LG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLA 236 (335)
T ss_pred cC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHH
Confidence 32 445678888888664 46777777777776543 1345677777777788887777777
Q ss_pred HHHHhc
Q 036199 612 LLCLCS 617 (710)
Q Consensus 612 L~~Lc~ 617 (710)
|-.+-.
T Consensus 237 l~~~~~ 242 (335)
T COG1413 237 LGEIGD 242 (335)
T ss_pred hcccCc
Confidence 655433
No 132
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.27 E-value=0.017 Score=56.06 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=38.3
Q ss_pred ccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
|.|-||.+-++.||++.|||.||-.|.-+-+.. .++|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999999997777765 45799997653
No 133
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.72 Score=55.30 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcc-Cccccccccc----ccchhchHHhh---cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHH
Q 036199 522 KFQELAIKILHNLSS-DVDIQSHIAP----SEFLPKLVPFL---KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSV 593 (710)
Q Consensus 522 ~~~~~A~~aL~nLs~-~~en~~~iv~----aG~V~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~L 593 (710)
.-...++.||.||-. +++-..-.-. -|-.+.+...| .++.++..|+.++..+..+.++-..++. .|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHHH
Confidence 356788999999976 5644332221 35666666666 4577999999999999999999999998 6778888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhh
Q 036199 594 AELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLR 658 (710)
Q Consensus 594 v~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~ 658 (710)
+.+|. .-|..++-++.+|+.|++.. +....+++.|++..+.++.-+ .++..|..|..||.-|.
T Consensus 1819 L~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1819 LTLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 88776 46788999999999999988 778888899998888777544 45677888888887654
No 134
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.14 E-value=0.39 Score=46.21 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=95.0
Q ss_pred ccccccchhchHHhhcCc--------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC--CHHHHHHHHHHH
Q 036199 543 HIAPSEFLPKLVPFLKDA--------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG--SEEDQEHAVAIL 612 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~--------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~--s~~~ke~A~~aL 612 (710)
..++.||+..|++++.++ ++...++.++..|-.+.-.-..... ...|..++..+... ++.+.+.|.++|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHH
Confidence 456789999999999542 4567788888888887654455665 56788888888753 688899999999
Q ss_pred HHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-Hhhhc
Q 036199 613 LCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRDV 660 (710)
Q Consensus 613 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~~ 660 (710)
-++..+++.....+.++=-++.|+..++..++..+.+|.+|+. +|.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999777888888778999999999999999999999998 44444
No 135
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=2 Score=45.66 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHh
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFL 477 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL 477 (710)
+..+++-|-.+..-+++.-......|.+..|..-|+.. .|.-+..+.+.....+..-...+..+.+.|.|..+..++
T Consensus 188 RvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteLaeteHgreflaQeglIdlicnII 264 (524)
T KOG4413|consen 188 RVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNII 264 (524)
T ss_pred HHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHh
Confidence 44555555566666666666667788888888877642 566777777777788866556677778999999999998
Q ss_pred ccCcHH--H--HHH----HHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccc
Q 036199 478 HSAAAT--E--ETL----AILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPS 547 (710)
Q Consensus 478 ~s~~~~--~--~Aa----~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~a 547 (710)
...++. + .+. ..+.++...+-.-..|.+ .-+|....+++...|+...+.|+.++..|-++.+.+..+.+.
T Consensus 265 sGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkT 344 (524)
T KOG4413|consen 265 SGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKT 344 (524)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhcc
Confidence 754431 1 222 222233322222233333 234566667788889999999999999999999998888776
Q ss_pred cc--hhchHHhhcCc---hHHHHHHHHHHHHhcC--------cchHH------HHHhhc------CChHHHHHHhhcCCH
Q 036199 548 EF--LPKLVPFLKDA---TLAVSCLVILKNMCNT--------EHARV------CVVETS------GCLPSVAELLEIGSE 602 (710)
Q Consensus 548 G~--V~~Lv~lL~~~---~~~~~al~iL~nLa~~--------~e~r~------~i~~~~------g~I~~Lv~lL~~~s~ 602 (710)
|- ...|+.-..+. .-++.++.+|.+++.. .+|+. .+.+.. .-...+..+++...+
T Consensus 345 gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfp 424 (524)
T KOG4413|consen 345 GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFP 424 (524)
T ss_pred CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCCh
Confidence 63 44444444332 2377778888888761 12222 122110 123455666777899
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 603 EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 603 ~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
+..-.|..++-.+...+=....++...|.+....+-+...
T Consensus 425 EihcAalktfTAiaaqPWalkeifakeefieiVtDastEh 464 (524)
T KOG4413|consen 425 EIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEH 464 (524)
T ss_pred hhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhh
Confidence 9999999999999988855566666788877776654433
No 136
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.10 E-value=0.018 Score=61.93 Aligned_cols=33 Identities=15% Similarity=0.453 Sum_probs=29.9
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHh
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWF 299 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~ 299 (710)
+++.||||...++||+|++|||+.||.|-..-+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 679999999999999999999999999976544
No 137
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.10 E-value=0.66 Score=47.37 Aligned_cols=172 Identities=20% Similarity=0.220 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH----H---HHHHHHHHHhccCch--hhHHHhhhCcHHHHHH
Q 036199 444 QRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA----T---EETLAILVALSSYAY--FISKIVASGALASILN 514 (710)
Q Consensus 444 q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~----~---~~Aa~~L~~Ls~~~~--nk~~I~~~GaI~~LV~ 514 (710)
..+|..+|..++++.+.|..++++-.=--|-.+|+.+.. + -.+.+++..|..+++ .-..+...+.||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 457777777789999888888777655555666664432 1 278899998886543 3334447899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCccccccccc-cc---ch----hchHHhh---cCchHHHHHHHHHHHHhcCcchHHHH
Q 036199 515 MLDSPNGKFQELAIKILHNLSSDVDIQSHIAP-SE---FL----PKLVPFL---KDATLAVSCLVILKNMCNTEHARVCV 583 (710)
Q Consensus 515 LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~-aG---~V----~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i 583 (710)
.+..|+...+.-|+-++..+-.++.+-..+.+ +. +| ..++--| .++.+...++.+.-+|+.++..|.++
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999998888776655543 22 22 2222222 23467888999999999999999888
Q ss_pred HhhcCChHHH-----HHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 584 VETSGCLPSV-----AELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 584 ~~~~g~I~~L-----v~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
.. +.|-. ...+-..++..+..-...|.++|.+
T Consensus 256 ~~---clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 256 RS---CLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred Hh---hCcchhccchHHHHHhcChhHHHHHHHHHHHhccC
Confidence 65 23321 1223335667777766666776643
No 138
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.06 E-value=0.043 Score=55.91 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=47.1
Q ss_pred CCcccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCCCCCc----cCCCCCcccHHHHHHHHH
Q 036199 266 PEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPKTKMK----LVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~t~~~----l~~~~l~pN~~l~~~i~~ 330 (710)
--+++|||+......||+- .|||.|+|..|+..+.. -...||+-+-. +.+..+.+...+++-|++
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 4578999999999999985 99999999999999863 23459987654 122334454455555544
No 139
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.91 Score=49.95 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=124.2
Q ss_pred HHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cccc-------cccccccchhchH
Q 036199 485 ETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD---VDIQ-------SHIAPSEFLPKLV 554 (710)
Q Consensus 485 ~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~---~en~-------~~iv~aG~V~~Lv 554 (710)
....-+..++..++--..+++..+++.|+.||...+.++.-+.+..|..|.-. +++- ..+++.++++.|+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 45666677788888888889999999999999999999999999999998741 2221 3467788999998
Q ss_pred Hhhc--C------chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCChHHH
Q 036199 555 PFLK--D------ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 555 ~lL~--~------~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
+-+. + ..-....++++.|+... ++....+++ .|.+..|+.-+.. .-...+.+|..+|.-+-.++.+++
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 8872 1 23477789999999984 555666777 5888888875553 345668899999988888887777
Q ss_pred HHHHhCCchHHHHHHh-----hcC-CHHHHHHHHHHHHHhh
Q 036199 624 KLVMNEGVIPSLVKIS-----VYG-NDKAKVSALELRRLLR 658 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~-----~~g-t~~~k~kA~~LL~~l~ 658 (710)
...-.-.++..|++=+ .+. +..-++.-..|...|+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLC 302 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLC 302 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHH
Confidence 7777777777665431 221 2334455555555443
No 140
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=1.8 Score=45.93 Aligned_cols=230 Identities=11% Similarity=0.132 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHccCcccc----hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHH
Q 036199 397 CQCKVIEDYETRLEHDNQVS----HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSL 472 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r----~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~ 472 (710)
++.-++..+..+.++.+.|- ..++..|.++.++..+.. .|.++-..|...|..++.....-..+.+......
T Consensus 98 VKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg----eddeVAkAAiesikrialfpaaleaiFeSellDd 173 (524)
T KOG4413|consen 98 VKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG----EDDEVAKAAIESIKRIALFPAALEAIFESELLDD 173 (524)
T ss_pred hhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCCh
Confidence 33445555666666655442 234678999999999976 6778888888888777543322222333322222
Q ss_pred HH--HHh-ccCc-HHHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCccccccccc
Q 036199 473 LA--SFL-HSAA-ATEETLAILVALS-SYAYFISKIVASGALASILNMLDS-PNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 473 LV--~lL-~s~~-~~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
+- .+- +..+ .+......+..++ ..++.....-.+|.+..|..=|.. .|.-+..+++...+.|...+..+..+.+
T Consensus 174 lhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ 253 (524)
T KOG4413|consen 174 LHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ 253 (524)
T ss_pred HHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch
Confidence 11 110 1111 1122333333333 344555555568887777766543 5667778889999999998889999999
Q ss_pred ccchhchHHhhcC---chH-HHHHH----HHHHHHhcCcchHHHHHhh-cCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 547 SEFLPKLVPFLKD---ATL-AVSCL----VILKNMCNTEHARVCVVET-SGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 547 aG~V~~Lv~lL~~---~~~-~~~al----~iL~nLa~~~e~r~~i~~~-~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
.|.|+.+-.++.- +.. .-.++ ..+.+++--+-.-+++++. .-+|....+++...++..++.|+.+|-.|.+
T Consensus 254 eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 254 EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 9999999998832 222 11223 3334444322222333331 1235566778888999999999999999888
Q ss_pred CChHHHHHHHhCCc
Q 036199 618 QRDQYCKLVMNEGV 631 (710)
Q Consensus 618 ~~~~~~~~v~~~G~ 631 (710)
+. +-.+.+...|-
T Consensus 334 nt-eGadlllkTgp 346 (524)
T KOG4413|consen 334 NT-EGADLLLKTGP 346 (524)
T ss_pred Cc-chhHHHhccCC
Confidence 77 45667777764
No 141
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=1.6 Score=49.95 Aligned_cols=217 Identities=15% Similarity=0.094 Sum_probs=129.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
+++.+...+...|+.....|..+...... ....-+.+.+.++|.. .+...+..|+..+.-+..+.-. ....
T Consensus 101 ~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~----~~~~~~~~aa~~~ag~v~g~~i-~~~~ 171 (569)
T KOG1242|consen 101 LLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTS----TKIAERAGAAYGLAGLVNGLGI-ESLK 171 (569)
T ss_pred HHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhcc----ccHHHHhhhhHHHHHHHcCcHH-hhhh
Confidence 33666677778887777666554432111 1223456777778875 6677788888888877654321 1223
Q ss_pred cccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc---CCCHHHHHHHHHHHHHhccCccccc
Q 036199 466 NEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLD---SPNGKFQELAIKILHNLSSDVDIQS 542 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~---~~~~~~~~~A~~aL~nLs~~~en~~ 542 (710)
+.+.+..|-..+.+.....+--..++.......+-..-.+.+.+|.|..+|. +..+.++..|..+...+-
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~------- 244 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM------- 244 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH-------
Confidence 5677777777776554321110111111111111112335666777777663 344555555544443332
Q ss_pred ccccccchhch----HHhhcCchH--HHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 543 HIAPSEFLPKL----VPFLKDATL--AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 543 ~iv~aG~V~~L----v~lL~~~~~--~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
..+.+.+|+.+ +.-+.+..+ ...++.+|..++.+..-.-+..- ...||.|.+.|-...+++|+.+..+|..+|
T Consensus 245 ~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 245 RCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred HhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 12234444443 333333433 56678899999988777777766 689999999999999999999999999998
Q ss_pred cCC
Q 036199 617 SQR 619 (710)
Q Consensus 617 ~~~ 619 (710)
.--
T Consensus 324 svi 326 (569)
T KOG1242|consen 324 SVI 326 (569)
T ss_pred Hhh
Confidence 543
No 142
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.64 E-value=2.8 Score=47.60 Aligned_cols=59 Identities=19% Similarity=0.067 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.+.-++..|+.+|...+.+-. ..+....+.-.|-..+.+.++.+|+.|.-+|+.++..+
T Consensus 499 EN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred hhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 466677888888855444331 22233344556777889999999999999999998543
No 143
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.60 E-value=0.11 Score=51.19 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=62.7
Q ss_pred cccccccchhchHHhhc-----------CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFLK-----------DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~-----------~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~ 610 (710)
..+++.||+..|+.+|. +......++.+|..|..+..|...+..+.++|..|+..|.+.+..++..|+.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35567788888888872 1246788999999999999999999998999999999999999999999999
Q ss_pred HHHHHh
Q 036199 611 ILLCLC 616 (710)
Q Consensus 611 aL~~Lc 616 (710)
+|..+|
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
No 144
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.045 Score=58.08 Aligned_cols=47 Identities=19% Similarity=0.547 Sum_probs=39.1
Q ss_pred CCcccccCCccccCCc-------------eecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 266 PEVFKCPLSLRLMYDP-------------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP-------------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
-.|-.|-||++=|-.| =-++|||.+--+|++-|.++ +.|||.|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 3567899999875443 57899999999999999986 66999999884
No 145
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.057 Score=55.92 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=38.2
Q ss_pred ccccCCcccc--CCce-ecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 269 FKCPLSLRLM--YDPV-VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 269 f~CPI~~~~m--~DPV-~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.-|-||+.=+ .|-+ +++|.|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 5799998754 2444 579999999999999998666789999988765
No 146
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.32 E-value=2.2 Score=51.54 Aligned_cols=190 Identities=18% Similarity=0.151 Sum_probs=133.4
Q ss_pred ccccchHHHHHHhccCcHH-HHHHHHHH--HhccCchhhHHHhhhCcHHHHHHhhcCC---CHHHHHHHHHHHHHhccC-
Q 036199 465 LNEDLFSLLASFLHSAAAT-EETLAILV--ALSSYAYFISKIVASGALASILNMLDSP---NGKFQELAIKILHNLSSD- 537 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~-~~Aa~~L~--~Ls~~~~nk~~I~~~GaI~~LV~LL~~~---~~~~~~~A~~aL~nLs~~- 537 (710)
+.-|++|-++++|.+...+ +-.+..++ -|+.++.....+++.++-...+..|..+ +++-+.-|+-+|..+..+
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 4679999999999998764 44555554 5778888888888877777777777652 357777778788888764
Q ss_pred cccccccccccchhchHHhhcCc--h-HHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA--T-LAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~--~-~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
+-......+.+.|..=+..|.++ . +..=++-.|..|-. .+++|-.=.+ .++...|+.+|....++++..|+-+|-
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 55566777888888878888763 2 34445666777766 4566655555 789999999999999999999999998
Q ss_pred HHhcCC----hHHHHHH-----------HhCCchH----HHHHHhhcCCHHHHHHHHHHHH
Q 036199 614 CLCSQR----DQYCKLV-----------MNEGVIP----SLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 614 ~Lc~~~----~~~~~~v-----------~~~G~v~----~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.+-.+. ++....+ .-+..++ .|+.+.++|++-++..-.-.|.
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 877652 2221111 1122233 6677788999887755444444
No 147
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.22 E-value=0.18 Score=39.18 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 036199 483 TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNL 534 (710)
Q Consensus 483 ~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nL 534 (710)
+..|+.+|.+++........-....+++.|+.+|.++++.++..|+.+|.+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578888888775555444445678899999999999999999999999875
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.69 E-value=0.057 Score=58.86 Aligned_cols=43 Identities=23% Similarity=0.542 Sum_probs=36.6
Q ss_pred ccccCCccccCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLMYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
=+||+|++=|-+-| ++.|.|+|--.|+.+|++ .+||+|+--..
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 48999999998886 569999999999999975 58999975444
No 149
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.47 Score=53.17 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=129.8
Q ss_pred CCccccccchHHHHHHhccCcHH--HHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 036199 461 GIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSS-YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD 537 (710)
Q Consensus 461 k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~ 537 (710)
|....+..+.++|+++|+++... --+...++|+-. ...-+..+.+.|.|..|++++.+.|...+.+..+.|+.|..+
T Consensus 424 RTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 424 RTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred HhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence 34456778899999999998764 356777777764 455666777899999999999988999999999999999986
Q ss_pred cccc--cccccccchhchHHhhcCch--HHHHHHHHHHHHhc----CcchHHHHHh---hcCChHHHHHHhhcCCHHHHH
Q 036199 538 VDIQ--SHIAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCN----TEHARVCVVE---TSGCLPSVAELLEIGSEEDQE 606 (710)
Q Consensus 538 ~en~--~~iv~aG~V~~Lv~lL~~~~--~~~~al~iL~nLa~----~~e~r~~i~~---~~g~I~~Lv~lL~~~s~~~ke 606 (710)
.++- -+....-++..++.+..|+. +++.++.+|+|+.- +++.+..... ..-....|++.++..+|-.-+
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 5543 45667788899999998874 59999999999965 2223322221 012345677777778888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHhC-CchHHHHHHh
Q 036199 607 HAVAILLCLCSQRDQYCKLVMNE-GVIPSLVKIS 639 (710)
Q Consensus 607 ~A~~aL~~Lc~~~~~~~~~v~~~-G~v~~Lv~L~ 639 (710)
..+.+|.+++..+...+..+.+. ..+....+++
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 88999988888776655655543 3444444443
No 150
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.31 E-value=1.7 Score=52.50 Aligned_cols=190 Identities=11% Similarity=0.074 Sum_probs=138.5
Q ss_pred cchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHH---hhhCcHHHHHHhhcCCCHHHHHHHHHHHHH-hccCcccccc
Q 036199 468 DLFSLLASFLHSAAATEETLAILVALSSYAYFISKI---VASGALASILNMLDSPNGKFQELAIKILHN-LSSDVDIQSH 543 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I---~~~GaI~~LV~LL~~~~~~~~~~A~~aL~n-Ls~~~en~~~ 543 (710)
.-+|.++++|-+...+-.|+..|...- +-..-.+ ..-|..|.+++||.+...+.+.--+-+=.. |+.++.-...
T Consensus 472 eQLPiVLQVLLSQvHRlRAL~LL~RFL--DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRALVLLARFL--DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHh--ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence 456777777766654444444443222 2222222 246999999999999888877654444334 4456555567
Q ss_pred cccccchhchHHhhcC-c----hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHh
Q 036199 544 IAPSEFLPKLVPFLKD-A----TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLC 616 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~-~----~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc 616 (710)
+++.++=...+..|.+ + +-..-|+-+|+.++. ..-|+.+-.+ .+.|..=++.|..+ .+-.+...+-+|-.|-
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 8888777777777755 2 345667888898888 4778888887 67788777788775 5778899999998888
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+....+=.=++.++.+.|+.++.+..+++|..|.-.|..|-..
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 88877777788899999999999999999999999999866654
No 151
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.22 E-value=0.4 Score=48.92 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhccCcccccccccccc-------hhchHHhhcC---chHHHHHHHHHHHHhcCcchHH-HHHhhcCC
Q 036199 521 GKFQELAIKILHNLSSDVDIQSHIAPSEF-------LPKLVPFLKD---ATLAVSCLVILKNMCNTEHARV-CVVETSGC 589 (710)
Q Consensus 521 ~~~~~~A~~aL~nLs~~~en~~~iv~aG~-------V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~-~i~~~~g~ 589 (710)
..-+..|+.+|+.||..+.|...+...+- +..|+++|.. .-.+|-|+.+|.+||..++... .+....++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35688999999999999999999988763 4445555533 4569999999999999766544 55555899
Q ss_pred hHHHHHHhhcC
Q 036199 590 LPSVAELLEIG 600 (710)
Q Consensus 590 I~~Lv~lL~~~ 600 (710)
|..|+..++..
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 152
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.91 E-value=0.3 Score=37.86 Aligned_cols=54 Identities=13% Similarity=0.040 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 602 ~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
+.+|+.|+++|.+++...+..... ....+++.|+.++.+.++.+|..|...|..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 468899999999988777544333 566788999999999999999999988864
No 153
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.084 Score=56.92 Aligned_cols=60 Identities=23% Similarity=0.484 Sum_probs=48.5
Q ss_pred ccccCCccccCCc-----eecCCCCccchhhHHHHhhh-CCCCCCCCCCccCCCCCcccHHHHHHH
Q 036199 269 FKCPLSLRLMYDP-----VVIESGQTFERMWIQKWFEE-GNHTCPKTKMKLVCQSLTPNTAMKDLI 328 (710)
Q Consensus 269 f~CPI~~~~m~DP-----V~~~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~~~l~pN~~l~~~i 328 (710)
-+||||++-..=| |++.|||-|--.||++|+.+ -...||.|...-..+.+.|-+++|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 5799999877766 56799999999999999942 234699998877777888888877655
No 154
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=1.1 Score=51.70 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=82.1
Q ss_pred cccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 542 SHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
..++.+|+-.++|.-|.|+ +++..|+..+..|+.+..+- . ..++.-||+++......++..|+.+|..++.+
T Consensus 367 ~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F---A--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~- 440 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF---A--VRALDFLVDMFNDEIEVVRLKAIFALTMISVH- 440 (823)
T ss_pred cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc---H--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-
Confidence 3578889999999999775 78999999999999854432 2 23578899999888889999999999888766
Q ss_pred hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 620 ~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
..+++.-++....-+.+.+..+|+.+..||+..+-
T Consensus 441 -----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 441 -----LAIREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred -----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34445556777777778888888877777775543
No 155
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=4.2 Score=49.96 Aligned_cols=209 Identities=19% Similarity=0.164 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhc----cCcH--HHHHHHHH---HHhccCchhhHHHhhhCcH
Q 036199 439 HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH----SAAA--TEETLAIL---VALSSYAYFISKIVASGAL 509 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~----s~~~--~~~Aa~~L---~~Ls~~~~nk~~I~~~GaI 509 (710)
.+..+|..+-.+|..++....... ....-+.-+-+.|. +... +..+..+| +.+.. .++...| .-.|
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~--~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i--~k~I 740 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEG--LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI--PKLI 740 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhh--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH--HHHH
Confidence 478899999999998865421111 11112223333332 2221 22333444 33333 2333333 2346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc----CcccccccccccchhchHHhhcCc---hHHH-HH--HHHHHHHhcCcch
Q 036199 510 ASILNMLDSPNGKFQELAIKILHNLSS----DVDIQSHIAPSEFLPKLVPFLKDA---TLAV-SC--LVILKNMCNTEHA 579 (710)
Q Consensus 510 ~~LV~LL~~~~~~~~~~A~~aL~nLs~----~~en~~~iv~aG~V~~Lv~lL~~~---~~~~-~a--l~iL~nLa~~~e~ 579 (710)
|-+|-.++..+...++.|-.+|+.+.. .++.... ....|...+..|..+ +... .| +-++..+....
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~-- 816 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF-- 816 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH--
Confidence 666656688889999999999998882 1111111 122444455554322 1111 11 22333332211
Q ss_pred HHHHHh---hcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 580 RVCVVE---TSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 580 r~~i~~---~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
..+.. ..+.+..+...|..+++++...|++.+..++..-++.+..-...-++|.+..++.+.+...|.+..-||..
T Consensus 817 -~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 817 -KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred -hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11111 02345555556667899999999999999999888766665666689999999999999999999888875
Q ss_pred h
Q 036199 657 L 657 (710)
Q Consensus 657 l 657 (710)
|
T Consensus 896 L 896 (1176)
T KOG1248|consen 896 L 896 (1176)
T ss_pred H
Confidence 5
No 156
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=0.11 Score=52.43 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=41.6
Q ss_pred CCcccccCCccccCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc
Q 036199 266 PEVFKCPLSLRLMYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT 319 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~ 319 (710)
-..|+|||++-.|.+-. +-+|||.|.-.+.++-- ..+||+|++.+...+.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 45799999999999864 45999999988877663 56899999999877643
No 157
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.56 E-value=4.9 Score=41.27 Aligned_cols=173 Identities=13% Similarity=0.142 Sum_probs=115.4
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhccCc--ccccccccccchhchHHh
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILNMLDS-----PNGKFQELAIKILHNLSSDV--DIQSHIAPSEFLPKLVPF 556 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~-----~~~~~~~~A~~aL~nLs~~~--en~~~iv~aG~V~~Lv~l 556 (710)
-+|.+.|..++.+++.|..+..+..=-.|-.+|.. ..+-.+-.+++.|..|..++ +....+...++||..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 38888889999999999999986643333444432 23456778899999998744 445667889999999999
Q ss_pred hcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCC-------hHHHHH-HhhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 036199 557 LKDA--TLAVSCLVILKNMCNTEHARVCVVETSGC-------LPSVAE-LLEIGSEEDQEHAVAILLCLCSQRDQYCKLV 626 (710)
Q Consensus 557 L~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~-------I~~Lv~-lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v 626 (710)
+..+ .-..-|.-|+..+-.++.|-..|.++..- +..+|. +.+.++++.-.+++.+...||.+. ..+..+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~aL 255 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARAAL 255 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHHHH
Confidence 9654 33667788888888888888877664322 222232 334589999999999999999887 333333
Q ss_pred HhCCchHHH----HHHhhcCCHHHHHHHHHHHHHhh
Q 036199 627 MNEGVIPSL----VKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 627 ~~~G~v~~L----v~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
. .-.-..| ....-..++.+|+--+.++..+.
T Consensus 256 ~-~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 256 R-SCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred H-hhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 2 2221222 22223344555655555665553
No 158
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.14 Score=54.83 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=50.5
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHH
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKD 326 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~ 326 (710)
...|.+++..|.|||-+..|..||-..|-.|+.. +.+-|.||+++...+|++-..-|+
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL~F~Kn 97 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKLKFHKN 97 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceeeeeccC
Confidence 5689999999999999999999999999999985 678999999999988887433333
No 159
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.41 E-value=1.1 Score=50.56 Aligned_cols=154 Identities=20% Similarity=0.209 Sum_probs=112.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCch------HHHHHHHHHHHHhcCcchHHH
Q 036199 509 LASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT------LAVSCLVILKNMCNTEHARVC 582 (710)
Q Consensus 509 I~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~------~~~~al~iL~nLa~~~e~r~~ 582 (710)
...+.+++.+|+...+..|...|..|+.++.-...+++..++..|..++.+++ +...++.++..|-.+.---..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 34556788899999999999999999999999999999999999999996653 344445554444333221111
Q ss_pred HHhhcCChHHHHHHhh--cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-Hhhh
Q 036199 583 VVETSGCLPSVAELLE--IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRD 659 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~--~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~ 659 (710)
.+. ..+|...+.++. .-+..+-..|+..|-++-.++....+.+.++--+..|+..++.++.+.+.+|.+|+. ++++
T Consensus 165 ~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 122 234444444443 235556778999999988888778899999999999999999999999999999998 5555
Q ss_pred ccCC
Q 036199 660 VAYS 663 (710)
Q Consensus 660 ~~~~ 663 (710)
+..+
T Consensus 244 a~~~ 247 (713)
T KOG2999|consen 244 APDD 247 (713)
T ss_pred CChH
Confidence 4433
No 160
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.35 E-value=3.6 Score=48.57 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=145.8
Q ss_pred HHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH---
Q 036199 407 TRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--- 483 (710)
Q Consensus 407 ~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--- 483 (710)
.++.....-|...+..|+.+.|.++..- ........+..+|-.-..-... .....++++.+.+.+...-
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f~~~----~~~~v~~~~~s~~~~d~~~~en 559 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDFPGE----RSYEVVKPLDSALHNDEKGLEN 559 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCCCCC----chhhhhhhhcchhhhhHHHHHH
Confidence 3333344556677899999999999876 3455666666666511011110 1234555555555443321
Q ss_pred HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-ccccc-ccchhchHHhhcC-
Q 036199 484 EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAP-SEFLPKLVPFLKD- 559 (710)
Q Consensus 484 ~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv~-aG~V~~Lv~lL~~- 559 (710)
-.+.-+|.||+ .++..|..|...-+++.+-.++-..++..+..++..+.||..++.-- ..+++ ...++.....+..
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 27888889898 45667777876555665556677788999999999999999876544 33444 3445554444432
Q ss_pred -chHHHHHHHHHHHHhcCcchHHH-HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHH
Q 036199 560 -ATLAVSCLVILKNMCNTEHARVC-VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637 (710)
Q Consensus 560 -~~~~~~al~iL~nLa~~~e~r~~-i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~ 637 (710)
......+++++..++...++.-. +.+...+...++.++.++++++|-..+.+.+++.....+....+.....++.|..
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 23344455556655554444333 4433456788899999999999999988888876666666777777777887776
Q ss_pred Hhhc
Q 036199 638 ISVY 641 (710)
Q Consensus 638 L~~~ 641 (710)
+...
T Consensus 720 ~~~~ 723 (748)
T KOG4151|consen 720 LQKL 723 (748)
T ss_pred HHHh
Confidence 6554
No 161
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.32 E-value=7.4 Score=44.23 Aligned_cols=150 Identities=14% Similarity=0.223 Sum_probs=108.3
Q ss_pred hHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCH----HHHHHHHHHHHHhccCcccccc
Q 036199 470 FSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNG----KFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 470 I~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~----~~~~~A~~aL~nLs~~~en~~~ 543 (710)
...+.+++.+|+. +..|...|-.|+.+......+....++..|..++.+|+. ......++++..|-.+.-.-+.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 3456677777764 235888889999998888888888889999999988865 4455566666655544334445
Q ss_pred cccccchhchHHhhc----CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 544 IAPSEFLPKLVPFLK----DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~----~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+.-.+|...+.+.. +..+...|+.+|.++..+.......+...--+..|+..|..++...+.+|.+.+-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 555555555555542 3456788999999999877654444433678999999999999999999998887776544
No 162
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.17 E-value=0.92 Score=40.07 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=56.3
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 588 GCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 588 g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
..+++++..+...+.++|..|+.+|.+++..... ...-.=..+++.|..+..+.++.+|..|.-|-++|++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence 4678888888889999999999999999876522 1111234678899999999999999988888877763
No 163
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.12 E-value=1.8 Score=45.01 Aligned_cols=94 Identities=11% Similarity=0.175 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh
Q 036199 563 AVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 563 ~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~ 640 (710)
...|+.+|.-++- |+..|..+.+ ..++..|+.+|. ...+.++-.++.+|..+...++.|...+.+.|++..+..+.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4557788888887 8888888887 789999999995 468999999999999999999999999999999999999976
Q ss_pred cC--CHHHHHHHHHHHHHh
Q 036199 641 YG--NDKAKVSALELRRLL 657 (710)
Q Consensus 641 ~g--t~~~k~kA~~LL~~l 657 (710)
+. +...|-|....|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 65 566788888866643
No 164
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.11 E-value=7 Score=47.26 Aligned_cols=238 Identities=19% Similarity=0.196 Sum_probs=131.3
Q ss_pred hcccCCcHHHHHHHhhccccC-CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhc----cCc----H--HHHH
Q 036199 418 SLSSTNFVEPLIRFLRDARDL-HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH----SAA----A--TEET 486 (710)
Q Consensus 418 ~I~~~G~I~~LV~lL~s~~~~-~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~----s~~----~--~~~A 486 (710)
.+.+.|++..|+.+|.+-.+. .+...-...+.+|...+.-..||..+++.|+++.|++.|. .+. . .+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 356789999999999763221 1222222333333333445677888888999999999885 222 1 1333
Q ss_pred HHHHHHhccC---chhhHHHh--h--------hCcHHHHHHhhcCC----CHHHHHHHHHHHHHhccCcccccccccccc
Q 036199 487 LAILVALSSY---AYFISKIV--A--------SGALASILNMLDSP----NGKFQELAIKILHNLSSDVDIQSHIAPSEF 549 (710)
Q Consensus 487 a~~L~~Ls~~---~~nk~~I~--~--------~GaI~~LV~LL~~~----~~~~~~~A~~aL~nLs~~~en~~~iv~aG~ 549 (710)
..++..|... ........ . ..-+..|++.+.+. ++......+++|-+|+...+.+..++-. .
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-H 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-H
Confidence 3333332211 11111000 1 11266777777544 5788899999999999876665433211 1
Q ss_pred hhchHHhh--cC---ch---HHHHHHHHHHHHhcCcc---hHHHHHhhcCChHHHHHHhhc--------CCHHHHH----
Q 036199 550 LPKLVPFL--KD---AT---LAVSCLVILKNMCNTEH---ARVCVVETSGCLPSVAELLEI--------GSEEDQE---- 606 (710)
Q Consensus 550 V~~Lv~lL--~~---~~---~~~~al~iL~nLa~~~e---~r~~i~~~~g~I~~Lv~lL~~--------~s~~~ke---- 606 (710)
..+.+++= .+ ++ ..+..+.+..++-.+.. -|..|++ .|.+...++.|.. .+++-++
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 11111211 11 11 13344444444444443 3678887 7999989988864 2333333
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHhh
Q 036199 607 ----HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRRLLR 658 (710)
Q Consensus 607 ----~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~~l~ 658 (710)
.++..|..||.+... .+.++..++++.|..|-+ +++...=..|-.+|.-|+
T Consensus 350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALA 405 (802)
T ss_pred CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence 688899999998844 444466777777777632 222333334444444443
No 165
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=91.05 E-value=2 Score=41.01 Aligned_cols=101 Identities=10% Similarity=0.173 Sum_probs=69.0
Q ss_pred ccchhhhhhhHHHHHHHHHhhccchhhhcCC---Cch-hhHHHHHHHHHHHHHHHHHHhccccchhHHHhhhhHHHHHHH
Q 036199 18 FKVHHGMCTQLSKFVERIAKVFPEIEAARPR---CSS-GVQALCLLNNAIGKAKSLLQYCSESSKLYLAITGGVIVSRCM 93 (710)
Q Consensus 18 ~~~~~~~c~~l~~~~~ri~ll~pllEelr~~---~~~-~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~~i~~~~~ 93 (710)
+..+|..+..|.. -|..|.|.++|+... .+. ...-+..|...|++|+.|++.|++.++ |=++.--....+++
T Consensus 29 ~~~fk~~l~~L~s---Tl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r-~n~~kk~~y~~Ki~ 104 (147)
T PF05659_consen 29 SLSFKSILKRLES---TLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRR-WNLYKKPRYARKIE 104 (147)
T ss_pred HHhhhhHHHHHHH---HHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccH-HHHHhhHhHHHHHH
Confidence 3455666666555 667778888888632 222 377888999999999999999998864 55567777888888
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 036199 94 RSTNMMEQSLSQIESMVPVMLAVEISQIIDDL 125 (710)
Q Consensus 94 ~~~~~l~~~L~~i~~~~~~~l~~~v~~~~~~l 125 (710)
++-.+|...+.. .++.....++.++...+
T Consensus 105 ~le~~l~~f~~v---~~q~~~~~D~~~l~~~~ 133 (147)
T PF05659_consen 105 ELEESLRRFIQV---DLQLHQLRDIKELLAKM 133 (147)
T ss_pred HHHHHHHHHhcc---hhHHHHHHHHHHHHHHH
Confidence 888888887642 13344433444444444
No 166
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=90.85 E-value=2.3 Score=44.16 Aligned_cols=219 Identities=18% Similarity=0.195 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhc-ccCCcHHHHHHHhhccc---cCCC-----HHHHHHHHHHHHHHhccCCCCCcc
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSL-SSTNFVEPLIRFLRDAR---DLHD-----SRAQRIGCRLLLAFVSKNRSGIPY 464 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I-~~~G~I~~LV~lL~s~~---~~~d-----~~~q~~A~~~L~nL~~~~~~k~~i 464 (710)
+++.+..|+.+|..--+..++--..+ -..|.+..|++-+-+-- ..+. ..-..+|+.+|..+++|.+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 45666667666543322222222222 35688888877554321 0011 123456666777778999999998
Q ss_pred ccccchHHHHHHhccCcHH---H----HHHHHHHHhccCc--hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 465 LNEDLFSLLASFLHSAAAT---E----ETLAILVALSSYA--YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~---~----~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
+++...--|.-+|+..+.. | .+.+++..|.+.+ +.-..+...+.||..++.+..|+.-.|.-|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 8999888888888755431 2 6788888888643 44444557899999999999999999999999999998
Q ss_pred cCccccccccc-ccc-------hhchHHhh---cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHH-----Hhhc
Q 036199 536 SDVDIQSHIAP-SEF-------LPKLVPFL---KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAE-----LLEI 599 (710)
Q Consensus 536 ~~~en~~~iv~-aG~-------V~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~-----lL~~ 599 (710)
.++..-..+.+ ..- +..+|.-| .++.+....+.+-..|+.++.+|.++.. ++|..++ .+-.
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~---~LP~~Lrd~~f~~~l~ 244 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ---CLPDQLRDGTFSNILK 244 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH---HS-GGGTSSTTTTGGC
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH---hCcHHHhcHHHHHHHh
Confidence 88776655543 222 22222222 2356788889999999999999998875 3444221 1112
Q ss_pred CCHHHHHHHHHHHHHH
Q 036199 600 GSEEDQEHAVAILLCL 615 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~L 615 (710)
+++..+..-...+.++
T Consensus 245 ~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 245 DDPSTKRWLQQLLSNL 260 (262)
T ss_dssp S-HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 4666666555554443
No 167
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=0.15 Score=55.10 Aligned_cols=41 Identities=22% Similarity=0.549 Sum_probs=37.0
Q ss_pred ccccCCccccCC---ceecCCCCccchhhHHHHhhhCC--CCCCCC
Q 036199 269 FKCPLSLRLMYD---PVVIESGQTFERMWIQKWFEEGN--HTCPKT 309 (710)
Q Consensus 269 f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~~g~--~~cP~t 309 (710)
|.|||..+-=.| |+.++|||..+|.+|.+-...|. ..||.|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 899999998777 99999999999999999988777 668887
No 168
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=12 Score=44.52 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=63.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh--cCchHHHHHHHHHHHHhc--CcchHHHH---
Q 036199 511 SILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCN--TEHARVCV--- 583 (710)
Q Consensus 511 ~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~--~~e~r~~i--- 583 (710)
.+++.|++.|...++.|+..++.|. +..|...| +.-|+.+| .+++....+..-+..++. .|+.+..|
T Consensus 354 tIleCL~DpD~SIkrralELs~~lv-n~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm 427 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALV-NESNVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM 427 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHh-ccccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 4667778888888888888888776 44554444 34566666 356677777777777776 45555433
Q ss_pred ---Hhh------cCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 584 ---VET------SGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 584 ---~~~------~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
..+ ...+..++.++.++.++..+.++..|+.
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~ 467 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYL 467 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 222 2357788888887766666666665544
No 169
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=89.78 E-value=0.88 Score=40.52 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHH--hhcCCHHHHHHHHHHHHHhhhccCCccc
Q 036199 605 QEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI--SVYGNDKAKVSALELRRLLRDVAYSVEQ 666 (710)
Q Consensus 605 ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L--~~~gt~~~k~kA~~LL~~l~~~~~~~~~ 666 (710)
|...+.++.+||..+..++..+.+.|++|.++.. ..+.+|-.|+-|...++.|.+.-..++.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5567889999999999999999999999999887 5667899999999999999877655543
No 170
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=3.2 Score=47.97 Aligned_cols=170 Identities=7% Similarity=0.034 Sum_probs=112.4
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC---ccc--cccchHHHHHHhccCcHH--HHHHHHHHHhc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI---PYL--NEDLFSLLASFLHSAAAT--EETLAILVALS 494 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~---~i~--~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls 494 (710)
+..+|.|..+|.+ +|...++-|..+|.++..+..... ..- -.-.||.++.+.++++.. ..|++.+--..
T Consensus 127 pelLp~L~~~L~s----~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDS----PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcC----CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 4578899999987 778889999999999865441100 000 123688899999888764 46666553222
Q ss_pred cCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHH
Q 036199 495 SYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILK 571 (710)
Q Consensus 495 ~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~ 571 (710)
.. .+...+.. ...+..|..+-.+.+++++++.+.+|.-|......+..=.=.++|..++..-. ++++.-+|+....
T Consensus 203 ~~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 203 II-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred ec-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 11 12222222 23466677777888999999999999998854433322223567777777664 4578889999999
Q ss_pred HHhcCcchHHHHHhh-cCChHHHHHH
Q 036199 572 NMCNTEHARVCVVET-SGCLPSVAEL 596 (710)
Q Consensus 572 nLa~~~e~r~~i~~~-~g~I~~Lv~l 596 (710)
.+|..+-.+..+..+ ...||.|+.-
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHcc
Confidence 999988777777553 2455666553
No 171
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=6 Score=47.87 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=149.3
Q ss_pred HHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH
Q 036199 403 EDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA 482 (710)
Q Consensus 403 ~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~ 482 (710)
..|..+.|.+.+|...+.+..++..++.+|-+ .+.+..-+.++..+...+. +. ++..-+-.+|..|++|..
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflin------dehRSslLrivscLitvdp-kq--vhhqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIN------DEHRSSLLRIVSCLITVDP-KQ--VHHQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeec------hHHHHHHHHHHHHHhccCc-cc--ccHHHHHHHHHHHHhcce
Confidence 45677889999999999999888888888855 2223233334444433222 22 355678889999998643
Q ss_pred H-------H-------HHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhc----------CCCHHHHHHHHHHHHHh---
Q 036199 483 T-------E-------ETLAILVALS-SYAYFISKIVASGALASILNMLD----------SPNGKFQELAIKILHNL--- 534 (710)
Q Consensus 483 ~-------~-------~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~----------~~~~~~~~~A~~aL~nL--- 534 (710)
. + ...++++..- .+...+..++++|+...|...|. .+|...--.-...||.+
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 1 1 2345555544 56678888899999988887772 22322222333444433
Q ss_pred --ccCccccccccc---ccchhchHHh---------------h--------cCchHHHH--HHHHHHHHhc------Cc-
Q 036199 535 --SSDVDIQSHIAP---SEFLPKLVPF---------------L--------KDATLAVS--CLVILKNMCN------TE- 577 (710)
Q Consensus 535 --s~~~en~~~iv~---aG~V~~Lv~l---------------L--------~~~~~~~~--al~iL~nLa~------~~- 577 (710)
+.++.|+..+.. ..-+..|+.. | ..+.++.+ |++-+-.+-. .|
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs 894 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS 894 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC
Confidence 346667654321 1111111111 1 11222111 1221211111 11
Q ss_pred ----chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHH---hhcCCHHHHHHH
Q 036199 578 ----HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI---SVYGNDKAKVSA 650 (710)
Q Consensus 578 ----e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L---~~~gt~~~k~kA 650 (710)
..++.|.. +|++..|+..+....|+.|-.-+..|-+++.-++.+....-..|.++.|+++ ..+|+.---..|
T Consensus 895 Gqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 895 GQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred CCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 23566777 7999999999988999999999999999999888888888888999988887 344544444455
Q ss_pred HHHHHHhh
Q 036199 651 LELRRLLR 658 (710)
Q Consensus 651 ~~LL~~l~ 658 (710)
.+++.+|.
T Consensus 974 lkIvemLg 981 (2799)
T KOG1788|consen 974 LKIVEMLG 981 (2799)
T ss_pred HHHHHHHh
Confidence 55555443
No 172
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=7.6 Score=45.69 Aligned_cols=252 Identities=13% Similarity=0.138 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHHHcc------CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 394 NWDCQCKVIEDYETRLEH------DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~------~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
+..++..|+.+|..-..- ++..|..|.+ ..++.-. ++|.++|..|..+|..+.+ .-..-...+.
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq-----vvcEatq----~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~ 257 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ-----VVCEATQ----SPDEEIQVAAFQCLVKIMSLYYEFMEPYME 257 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHhhhceeee-----eeeeccc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677776544432 2333433321 1222222 3788999999999888743 2221122234
Q ss_pred ccchHHHHHHhccCcHHHHHHHHHH---HhccC--c----------hhh----HHHh---hhCcHHHHHHhhcC--CCH-
Q 036199 467 EDLFSLLASFLHSAAATEETLAILV---ALSSY--A----------YFI----SKIV---ASGALASILNMLDS--PNG- 521 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~~~Aa~~L~---~Ls~~--~----------~nk----~~I~---~~GaI~~LV~LL~~--~~~- 521 (710)
...+..-+.-.++.+. +-|..++. +++.. + .+. ..+. -.+.+|.|+++|.. ++.
T Consensus 258 ~alfaitl~amks~~d-eValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d 336 (859)
T KOG1241|consen 258 QALFAITLAAMKSDND-EVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDD 336 (859)
T ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcc
Confidence 4455555555666554 33444432 23211 0 011 1111 14778899999842 111
Q ss_pred ----HHHHHHHHHHHHhccCcccccccccccchhchHHhh----cCchH--HHHHHHHHHHHhcCcc--hHHHHHhhcCC
Q 036199 522 ----KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL----KDATL--AVSCLVILKNMCNTEH--ARVCVVETSGC 589 (710)
Q Consensus 522 ----~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL----~~~~~--~~~al~iL~nLa~~~e--~r~~i~~~~g~ 589 (710)
...+.|..+|.-++. .+.-.+||+.+.++ .++++ .+.|+.++..+-..++ ....++. ++
T Consensus 337 ~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~--qa 407 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI--QA 407 (859)
T ss_pred cccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh--hh
Confidence 345556666655553 23345667777776 45666 5556656665555433 3345554 78
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH-HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCCcc
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY-CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVE 665 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~-~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~~~ 665 (710)
+|.++.++...+-.+++.+.|.|..+|..-++. .....-.+.++.|+.=+ +..+|.-.++.|.+--|.++-+.-.
T Consensus 408 lp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 408 LPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred hHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888899999999999999887642 22223334444444333 3467888889998888876655433
No 173
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=88.09 E-value=2.8 Score=41.86 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=68.5
Q ss_pred cccchHHHHHHhccCcH--------HHHHHHHHHHhccCchhhHHHhh--hCc--HHHHHHhhcCCCHHHHHHHHHHHHH
Q 036199 466 NEDLFSLLASFLHSAAA--------TEETLAILVALSSYAYFISKIVA--SGA--LASILNMLDSPNGKFQELAIKILHN 533 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--------~~~Aa~~L~~Ls~~~~nk~~I~~--~Ga--I~~LV~LL~~~~~~~~~~A~~aL~n 533 (710)
+...+..|+..+..|.. ....+.+|.|++..++.|..+.. .+. |..|+..+.+.+..-+.-++++|.|
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 45677888887765321 25789999999999999999996 344 6777777777788888999999999
Q ss_pred hccCcccccccccc---cchhchHH
Q 036199 534 LSSDVDIQSHIAPS---EFLPKLVP 555 (710)
Q Consensus 534 Ls~~~en~~~iv~a---G~V~~Lv~ 555 (710)
+|...+....+... +++|.|+-
T Consensus 130 ccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred hhccHhHHHHhcCchhhhhHHHHHh
Confidence 99999888877763 44444433
No 174
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.06 E-value=0.44 Score=36.64 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=23.8
Q ss_pred cccccCCccccCCceec-CCCC--ccchhh-HHHHhhhCCCCCCCCCCc
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQ--TFERMW-IQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~--ty~r~~-I~~w~~~g~~~cP~t~~~ 312 (710)
.+.||||...|.-||-. .|.| .||-.. |+.....+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999975 6765 477644 333344455679999864
No 175
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=5.5 Score=46.16 Aligned_cols=259 Identities=14% Similarity=0.129 Sum_probs=148.3
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY 464 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i 464 (710)
||...+..++..+..|+..+....-...+. .+.. ..+++.+..+-. ..+++++.+.+.+|.-+..-...|..-
T Consensus 179 fl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalan----D~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 179 FLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALAN----DEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 445556667888888887775544332221 1111 234444444442 378999999999888875533334433
Q ss_pred ccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhc-CC-CH-----------------
Q 036199 465 LNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA--SGALASILNMLD-SP-NG----------------- 521 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~-~~-~~----------------- 521 (710)
.-.++|+-++..-...+.. -+|+.....++..+-.+..+.. ...||.|+.-+. ++ +.
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDree 332 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREE 332 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhh
Confidence 3356666666665544432 4788888888887766666654 467887775331 11 00
Q ss_pred -------------------------------------HHHHHHHHHHHHhccCcccccccccccchhchHHhh----cCc
Q 036199 522 -------------------------------------KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL----KDA 560 (710)
Q Consensus 522 -------------------------------------~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL----~~~ 560 (710)
..++..+.+|--|+ .+.....++.++.+| .++
T Consensus 333 DIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~ 405 (885)
T KOG2023|consen 333 DIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSE 405 (885)
T ss_pred hccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcc
Confidence 01222233332222 122334556666665 334
Q ss_pred h--HHHHHHHHHHHHhcCcchHH-HHHhh-cCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchHHH
Q 036199 561 T--LAVSCLVILKNMCNTEHARV-CVVET-SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIPSL 635 (710)
Q Consensus 561 ~--~~~~al~iL~nLa~~~e~r~-~i~~~-~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~~L 635 (710)
+ ++|.++-+|+.+|. |.. -++.+ +..||-|+.+|....+-+|.-++|.|..-+..-.. .+.... .-++..|
T Consensus 406 ~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~l 481 (885)
T KOG2023|consen 406 EWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGL 481 (885)
T ss_pred hhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHH
Confidence 4 36666666667664 222 22221 23578888889888999999999998665432100 011111 0123444
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 636 VKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 636 v~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+.-+-+++.++++.|...+..|-+..
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 55577899999999999888776543
No 176
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.97 E-value=19 Score=43.65 Aligned_cols=261 Identities=15% Similarity=0.160 Sum_probs=141.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
.++.+.+-+.+.-|...|-.-..++.-+-..=.+...+..++++|.. .+.++|-.|+.+|.-+++. +..
T Consensus 12 ekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D----~ngEVQnlAVKClg~lvsK-------vke 80 (1233)
T KOG1824|consen 12 EKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED----KNGEVQNLAVKCLGPLVSK-------VKE 80 (1233)
T ss_pred HHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhh-------chH
Confidence 56666777777777777654443332222222445678889999987 6899999999999988632 233
Q ss_pred cchHHHHHHhccC----cHH---HHHHHHHHHhccCchhhHHHhhhCcHHH----HHHhhc--CCCHHHHHHHHHHHHHh
Q 036199 468 DLFSLLASFLHSA----AAT---EETLAILVALSSYAYFISKIVASGALAS----ILNMLD--SPNGKFQELAIKILHNL 534 (710)
Q Consensus 468 gaI~~LV~lL~s~----~~~---~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~----LV~LL~--~~~~~~~~~A~~aL~nL 534 (710)
.-+..+|+-|-++ ..+ ..+.+.....+...........+.+.+. |+.-+. .+...++-.++..|...
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 3455555554433 111 1344333333322211111122223333 333331 22233555555555544
Q ss_pred ccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHH
Q 036199 535 SSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAI 611 (710)
Q Consensus 535 s~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~a 611 (710)
-+.-..-.-=...+....++.-+..+ .++.+|+.+|+.|+..-. +.... +.|..|++-|.. .++..-.--+.+
T Consensus 161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~---~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV---ELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH---HHHHHHHhccCCCCchHHHHHHHHH
Confidence 32211111113455666666666554 468899999999987322 22222 235555555543 344444455566
Q ss_pred HHHHhcCChHHHHHHHhCCchHHHHHHh---hcCCHHHHHHHHHHHHHhhhccCCc
Q 036199 612 LLCLCSQRDQYCKLVMNEGVIPSLVKIS---VYGNDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 612 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~---~~gt~~~k~kA~~LL~~l~~~~~~~ 664 (710)
|..+|.... .+.--.-.-++|.+.+.. ....++.|++....+..|-...+.+
T Consensus 237 l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 237 LAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 666665541 111112223577777776 6778889999999998665444443
No 177
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.78 E-value=14 Score=40.28 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=119.4
Q ss_pred HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-cccc-----ccc-c-ccchhchHHhhcCchHHHHHHHHHHHH
Q 036199 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQS-----HIA-P-SEFLPKLVPFLKDATLAVSCLVILKNM 573 (710)
Q Consensus 502 ~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~-----~iv-~-aG~V~~Lv~lL~~~~~~~~al~iL~nL 573 (710)
.+...+.+..|+..|..-+-+++++++.+..++.... +++. .+. . ..++..|+.--.++++.-.|-.+|+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 4456789999999999999999999999999998643 3332 222 2 345555555557788999999999999
Q ss_pred hcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC---chHHHHHHhhcCCHHHHHHH
Q 036199 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG---VIPSLVKISVYGNDKAKVSA 650 (710)
Q Consensus 574 a~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G---~v~~Lv~L~~~gt~~~k~kA 650 (710)
+.++.-...|.. ...+..+.+.+..++-++...|...+..+-..+.......+... .+.....|+.+++--+|+.+
T Consensus 151 ~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 999887778887 67899999999999999999999999887777655555555443 35677888999999999999
Q ss_pred HHHHHHh
Q 036199 651 LELRRLL 657 (710)
Q Consensus 651 ~~LL~~l 657 (710)
.+||.-+
T Consensus 230 lkLL~el 236 (335)
T PF08569_consen 230 LKLLGEL 236 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999833
No 178
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=87.65 E-value=0.56 Score=35.90 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=31.1
Q ss_pred cccCCcc--ccCCceecCCC-----CccchhhHHHHhhh-CCCCCCCCC
Q 036199 270 KCPLSLR--LMYDPVVIESG-----QTFERMWIQKWFEE-GNHTCPKTK 310 (710)
Q Consensus 270 ~CPI~~~--~m~DPV~~~~G-----~ty~r~~I~~w~~~-g~~~cP~t~ 310 (710)
.|-||++ --.+|.+.+|. +-+=+.|+++|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3677775 45678888875 56889999999974 567899984
No 179
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.30 E-value=6.8 Score=46.35 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=77.8
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHh-ccCc---
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVAL-SSYA--- 497 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~L-s~~~--- 497 (710)
.+-.+++.|+++..+.+.-++-.|+.+|.++++.+ +..+..|.+.++|++.+. ++.|+-++..+ -..+
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~E------mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~ 177 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE------MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV 177 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH------HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH
Confidence 34456667776666677777888888888885543 345667888888887665 33443333322 2222
Q ss_pred -----hhhHHHhh--hC----cHHHHHHhhcCCC------HHHHHHHHHHHHHhccCccccccccc-ccchhch------
Q 036199 498 -----YFISKIVA--SG----ALASILNMLDSPN------GKFQELAIKILHNLSSDVDIQSHIAP-SEFLPKL------ 553 (710)
Q Consensus 498 -----~nk~~I~~--~G----aI~~LV~LL~~~~------~~~~~~A~~aL~nLs~~~en~~~iv~-aG~V~~L------ 553 (710)
..+..+-+ .| ++..+.+++..+. ......-...|.++....=... .+ +|+-.|.
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspe--ydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPE--YDVHGISDPFLQIRIL 255 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--cCccCCCchHHHHHHH
Confidence 23333332 33 3455555554432 1234455566666653110000 11 2333332
Q ss_pred --HHhh--cCchHHHHHHHHHHHHhcC
Q 036199 554 --VPFL--KDATLAVSCLVILKNMCNT 576 (710)
Q Consensus 554 --v~lL--~~~~~~~~al~iL~nLa~~ 576 (710)
+++| .+++..+...-+|+.++++
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatn 282 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATN 282 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhc
Confidence 2233 3566777778888888774
No 180
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=86.87 E-value=0.57 Score=39.08 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=32.1
Q ss_pred cccCCccccC----Cceec-CCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 270 KCPLSLRLMY----DPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 270 ~CPI~~~~m~----DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
.||-|.--|. =||+. .|.|.|--+||.+|++. ...||..+|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 4666655441 13443 89999999999999996 66899999874
No 181
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=86.79 E-value=10 Score=42.44 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=85.0
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCC-------HHHHHHHHHHHHHhccCcccc--cccccccchhchHHhhc---Cch----
Q 036199 498 YFISKIVASGALASILNMLDSPN-------GKFQELAIKILHNLSSDVDIQ--SHIAPSEFLPKLVPFLK---DAT---- 561 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~-------~~~~~~A~~aL~nLs~~~en~--~~iv~aG~V~~Lv~lL~---~~~---- 561 (710)
.||..+.++-+.+.+=++|.+++ .--+.-++..|...|..++-. ..|+ ..||.|..+++ +++
T Consensus 47 ~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~ 124 (698)
T KOG2611|consen 47 LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDN 124 (698)
T ss_pred hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhh
Confidence 47888888888898889986442 234567788888889887654 3344 57999999993 233
Q ss_pred --HHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHH
Q 036199 562 --LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCL 615 (710)
Q Consensus 562 --~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~L 615 (710)
+.+.|-..|...|+++.|...+.. .|+++.+.++-.. +-.-.++-|+.+|+-+
T Consensus 125 ~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 125 LIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 689999999999999999999998 7999999986553 2333345555555444
No 182
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=0.35 Score=54.93 Aligned_cols=61 Identities=20% Similarity=0.392 Sum_probs=43.3
Q ss_pred CcccccCCcccc----CCceecCCCCccchhhHHHHhhhCCCCCCCCC--Cc--cCCCCCcccHHHHHHHHH
Q 036199 267 EVFKCPLSLRLM----YDPVVIESGQTFERMWIQKWFEEGNHTCPKTK--MK--LVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 267 ~~f~CPI~~~~m----~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~--~~--l~~~~l~pN~~l~~~i~~ 330 (710)
+-++|+||...| ..||.+-||||.|+.|.+.-+. .+||.-+ .. ....+.--|++|-+.+..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp~~~De~~~~~~~~e~p~n~alL~~~~d 78 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCPTKRDEDSSLMQLKEEPRNYALLRREHD 78 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCCCCccccchhcChhhcchhHHHHHhhcc
Confidence 457899997666 4799999999999999999874 4777221 11 122345568887776654
No 183
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.16 E-value=20 Score=41.44 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=130.7
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCccc--chhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCC
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQV--SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGI 462 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~--r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~ 462 (710)
.|..|.+.+++++.+|+.....+++-=... -..+..-|.| |.+-| +..++++.-..+.++..+.+ +.-.+.
T Consensus 609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~l----ge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENL----GEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhc----CcccHHHHHHHHHHHHHHhhhhccccc
Confidence 335567778888888877666555421100 1112222221 33333 33677777777777776633 322222
Q ss_pred ccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc
Q 036199 463 PYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e 539 (710)
.---.|.+|.|.-+|++...+ .+..+.+..++.......-..+ -..--.||++|.+-+.+.+.+|..++..+|.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~--- 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR--- 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh---
Confidence 223478999999999987653 4666666666644322211112 1234568899999899999999999887772
Q ss_pred cccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh---cCCHHHHHHHHHHHHHHh
Q 036199 540 IQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE---IGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~---~~s~~~ke~A~~aL~~Lc 616 (710)
.+--..++..|+.-|...+=+...+..+ +...+++..|....|=-++. +....+|.-.+.++..+.
T Consensus 760 ---aiGPqdvL~~LlnnLkvqeRq~Rvctsv--------aI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 760 ---AIGPQDVLDILLNNLKVQERQQRVCTSV--------AISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhhhhhhh--------hhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 1111223333333332221111111111 11122333343333333333 344444554444433332
Q ss_pred cCChHHHHHHH--hCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVM--NEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~--~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..- .+... -..+.|.|-+-+.+.++.-|.-|..+++||.=.
T Consensus 829 eyi---g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 829 EYI---GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHH---HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 221 11111 123455566667778888888888888887643
No 184
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=20 Score=42.22 Aligned_cols=246 Identities=13% Similarity=0.205 Sum_probs=144.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
++|...++.+|..|+..|+.|++.+++|--. .-|.+.++|... .+.=+....+.+..+|.--+ .-...
T Consensus 188 EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttS---sNNWmLIKiiKLF~aLtplE----PRLgK 255 (877)
T KOG1059|consen 188 EKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLE----PRLGK 255 (877)
T ss_pred HhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhcc---CCCeehHHHHHHHhhccccC----chhhh
Confidence 6788889999999999999999999988654 347778888652 22222223333333332111 11345
Q ss_pred cchHHHHHHhccCcHH---HHHHHHHH--HhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 468 DLFSLLASFLHSAAAT---EETLAILV--ALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~---~~Aa~~L~--~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
..+++|..++.+.+.. -+++.++. +++... ++-..| .=++..|-.++.+.|+..+-.++-|+..+...+.-
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~- 332 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK- 332 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-
Confidence 5789999999887653 23333332 333221 111111 12466677777888999999999999888753221
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCH-HHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSE-EDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~-~~ke~A~~aL~~Lc~~ 618 (710)
.|++ --+.+++.|.| +.++-.|+..|..+.. .++-.+|+. .|+..+...++ ..+..-+.-...+|+.
T Consensus 333 --~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 333 --AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK------TLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred --HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH------HHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 1110 11234666754 6788889988888875 334444443 44554443333 4566666666788887
Q ss_pred ChHHHHHHHhCC-chHHHHHHh-hcCCHHHHHHHHHHHHHhhhc
Q 036199 619 RDQYCKLVMNEG-VIPSLVKIS-VYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~~~~~v~~~G-~v~~Lv~L~-~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+. + +-+.+.. .+..|++|. ..|+.++..-|..++-+.-+.
T Consensus 403 sn-Y-~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV 444 (877)
T KOG1059|consen 403 SN-Y-QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRV 444 (877)
T ss_pred hh-h-hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheec
Confidence 62 2 2232222 355667774 345666776776666654433
No 185
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=85.44 E-value=3.4 Score=48.29 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc---cccccchhchHHhhcC--chHHHHHHHHHHHHhcCc-chHHH
Q 036199 509 LASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH---IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTE-HARVC 582 (710)
Q Consensus 509 I~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~---iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~-e~r~~ 582 (710)
+..++..|++.++.++..|+..+..|+.--.+|.. |...|.| |..-|.+ +++....+++|..+...- -.+..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 55667788899999999999988888754444422 2233332 4455532 566555555555554421 11111
Q ss_pred HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH---HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY---CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~---~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
--..+.+|.|.-+|++...+++++++..+..+|.+++++ +.-|. +-=-|+++++..+...|+.|..-+-.+.+
T Consensus 879 -pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 -PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred -CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 011468999999999999999999999999999988653 22221 12246667777777888887765554443
No 186
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.19 E-value=0.55 Score=48.81 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=28.5
Q ss_pred CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 285 ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 285 ~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+|||+.|-+|.-+-|..|...||.|+.+|..
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 8999999999999999999999999887653
No 187
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.16 E-value=17 Score=42.80 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=34.0
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
|++.|-.++...++.-|--++-++.-+..-++...+.-. ..++..+.+.++..|-+|..||.
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchhHHHHHHHHH
Confidence 566666666667777777777776666655543222111 23344445555555555555544
No 188
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=84.88 E-value=19 Score=42.38 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=138.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCccc--chhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCC
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQV--SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGI 462 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~--r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~ 462 (710)
.|..|.+.+..++.+|+..+..+++-=... -..+..-|.| |.+.|.. .++++.-..+.+|..+.+ ..-.|.
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge----eypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhcccccc
Confidence 345677788899999988887776531111 1122333332 4555544 677777666666666633 222233
Q ss_pred ccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc
Q 036199 463 PYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e 539 (710)
.---.|.+|.|.-+|++...+ +++...+..++..........+ -..--.|+++|.+-+.+.+.+|..++..++.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak--- 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK--- 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence 223478999999999987653 6788877777744322222112 2234568888888889999999999887772
Q ss_pred cccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCC---hHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 540 IQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGC---LPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~---I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
.+--..++..|+.-|...+=+...+..+ +...+.++.|- +|.|+.--++....+|.-.+.+|..+.
T Consensus 955 ---aIGPqdVLatLlnnLkvqeRq~RvcTtv--------aIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 955 ---AIGPQDVLATLLNNLKVQERQNRVCTTV--------AIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhchhhhh--------hhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence 1111223333333332221111111111 11122333343 344433333455555654444444433
Q ss_pred cCChHHHHHHHh--CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVMN--EGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~~--~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..- .++-.+ ..+.|.|-+-+.+.+..-|.-|..+++|+.=.
T Consensus 1024 eyi---gemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1024 EYI---GEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHH---HHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 222 111111 23456667777888888888999999988644
No 189
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.56 E-value=0.26 Score=50.40 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=43.3
Q ss_pred CcccccCCccccCCce----------ecCCCCccchhhHHHHhhhC-CCCCCCCCCccCCCCCccc
Q 036199 267 EVFKCPLSLRLMYDPV----------VIESGQTFERMWIQKWFEEG-NHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV----------~~~~G~ty~r~~I~~w~~~g-~~~cP~t~~~l~~~~l~pN 321 (710)
++=.|-+|++-+-+-| .++|+|.|---||+.|---| .+|||-|++..+...+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4568999998777766 68999999999999996533 6799999987765544444
No 190
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=84.28 E-value=18 Score=40.67 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcc----CCCCCccccccchHHHHHHhccCcH---------HHHHHHHHHHhccCchhhHHHhhhCcHH
Q 036199 444 QRIGCRLLLAFVSK----NRSGIPYLNEDLFSLLASFLHSAAA---------TEETLAILVALSSYAYFISKIVASGALA 510 (710)
Q Consensus 444 q~~A~~~L~nL~~~----~~~k~~i~~~gaI~~LV~lL~s~~~---------~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~ 510 (710)
|-.|+....++..+ ..+|..+.++=|++.+=++|.+++. ..-++++|.-.|..++-...=---..||
T Consensus 28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~~IP 107 (698)
T KOG2611|consen 28 RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVSRIP 107 (698)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHHhhh
Confidence 33344444455543 2557777888899999999975432 1367777777777765433222235799
Q ss_pred HHHHhhcCC-CHH------HHHHHHHHHHHhccCcccccccccccchhchHHhhc--Cch-HHHHHHHHHHHHhc----C
Q 036199 511 SILNMLDSP-NGK------FQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DAT-LAVSCLVILKNMCN----T 576 (710)
Q Consensus 511 ~LV~LL~~~-~~~------~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~-~~~~al~iL~nLa~----~ 576 (710)
.|.+++..+ |++ ..+++-.+|+..+..+.....++..|+|+.+.++-. +.. ....++.++-.++. .
T Consensus 108 ~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw 187 (698)
T KOG2611|consen 108 LLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCW 187 (698)
T ss_pred HHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccC
Confidence 999999533 333 778999999999999999999999999999987752 222 23444555544443 1
Q ss_pred cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
++.-..+.. .|..+..-+.......|-..+.+|.
T Consensus 188 ~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 188 SETIERFLA---LIAAVARDFAVLHNALKFELCHLLS 221 (698)
T ss_pred cCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222222222 2333333333334444555555554
No 191
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=84.11 E-value=26 Score=37.71 Aligned_cols=154 Identities=21% Similarity=0.166 Sum_probs=84.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cccccccccccchhchHHhhcCc----hHHHHHHHHHHHHhc-Ccch
Q 036199 508 ALASILNMLDSPNGKFQELAIKILHNLSSD---VDIQSHIAPSEFLPKLVPFLKDA----TLAVSCLVILKNMCN-TEHA 579 (710)
Q Consensus 508 aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~---~en~~~iv~aG~V~~Lv~lL~~~----~~~~~al~iL~nLa~-~~e~ 579 (710)
.+..+.+.++.|..+-+..|+.++.-|+.. .+....+. ....|.|...+.++ ..+..|+.+|+.++- +..+
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 477788888888877777788877777754 12333333 35778888888653 233445555555543 1111
Q ss_pred HHHHHhhcCChHHHHH--Hhhc-C---------CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHH
Q 036199 580 RVCVVETSGCLPSVAE--LLEI-G---------SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAK 647 (710)
Q Consensus 580 r~~i~~~~g~I~~Lv~--lL~~-~---------s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k 647 (710)
-..+...-..+..+.. .++. | ++...-.|+.+-.-|.+.-+.....-.-...+|.|..++.+.+..+|
T Consensus 166 ~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 166 EEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVR 245 (309)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 1222210012332222 1221 1 23444455444323332222211112224568999999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 036199 648 VSALELRRLLRDVAY 662 (710)
Q Consensus 648 ~kA~~LL~~l~~~~~ 662 (710)
-.|...|-+|-+...
T Consensus 246 iAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 246 IAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999988887755443
No 192
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.88 E-value=11 Score=44.35 Aligned_cols=250 Identities=16% Similarity=0.147 Sum_probs=129.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-CCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-GIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~-k~~i~~ 466 (710)
.-+...++.++..|+-.+..+-.. +.......|+++.|-.++.+ .++.+..+|+.+|..+.....+ ....+.
T Consensus 128 ~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 128 KCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 445666777787777666665433 34456678999999999985 7899999999999999553322 222223
Q ss_pred ccchHHHHHHhccCcHHHHHHHHHHHhccC---ch-hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccc
Q 036199 467 EDLFSLLASFLHSAAATEETLAILVALSSY---AY-FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~---~~-nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~ 542 (710)
.-.+..++..|..-+. =.-+.+|-.|+.. +. .... .+..+...|...+..+.-.+...+.++.....+..
T Consensus 201 ~~~~~~lL~al~ec~E-W~qi~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 201 PQLINKLLEALNECTE-WGQIFILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred HHHHHHHHHHHHHhhh-hhHHHHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 3333333333322111 1233333344321 11 1111 23334444455555555555555555554333322
Q ss_pred ccccccchhchHHhhcCch-H------------------------------------HHHHHHHHHHHhcCcchHHHHHh
Q 036199 543 HIAPSEFLPKLVPFLKDAT-L------------------------------------AVSCLVILKNMCNTEHARVCVVE 585 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~~-~------------------------------------~~~al~iL~nLa~~~e~r~~i~~ 585 (710)
..+-...-++|+.++..+. + ...=+.++..|+....-.+
T Consensus 275 ~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q---- 350 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ---- 350 (734)
T ss_pred HHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH----
Confidence 2222333444554443322 1 1111222222222111000
Q ss_pred hcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-HhhhccCC
Q 036199 586 TSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRDVAYS 663 (710)
Q Consensus 586 ~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~~~~~ 663 (710)
.++-|.+.-..-+.+.-..|+.++..++..-.+ .++.+..|++++..+-+.+...+..+++ ++|+..+.
T Consensus 351 ---vl~El~eYatevD~~fvrkaIraig~~aik~e~------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 351 ---VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ------SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred ---HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 011111111224666667777777776554322 1778899999988777776666777777 55665443
No 193
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.46 E-value=14 Score=43.55 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=119.4
Q ss_pred CCcHHHHHHHhhccccC---CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhcc-
Q 036199 422 TNFVEPLIRFLRDARDL---HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSS- 495 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~---~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~- 495 (710)
.+.+|.|+++|....+. .|-..-..|-.+|.-++.....++ +. -++|.+-.-+++++-+ +.|+-++...-.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I--v~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI--VP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc--hh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 36788899988652111 122334445555555544333222 22 4555555566777653 455555555543
Q ss_pred CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccc-ccccccchhchHHhhcC-chHHHHHHHHHHH
Q 036199 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQS-HIAPSEFLPKLVPFLKD-ATLAVSCLVILKN 572 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~-~iv~aG~V~~Lv~lL~~-~~~~~~al~iL~n 572 (710)
-+..+..-...+++|.++.++.+.+.-++..++++|..++. .++-+. ...-.+.++.|+.=|.| +.+...+++++.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFIS 474 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHH
Confidence 33344444468899999999998888889999999999985 343332 23345677777776654 7899999999999
Q ss_pred HhcC--cchHHH----HHhhcCChHHHHH-Hhh---c---CCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 036199 573 MCNT--EHARVC----VVETSGCLPSVAE-LLE---I---GSEEDQEHAVAILLCLCSQRDQYCKLVM 627 (710)
Q Consensus 573 La~~--~e~r~~----i~~~~g~I~~Lv~-lL~---~---~s~~~ke~A~~aL~~Lc~~~~~~~~~v~ 627 (710)
|+.. +..... ... ...+.++. +|. . .....|-.|..+|-.|-.+++..+-.++
T Consensus 475 Laea~~eA~~s~~qt~~~t--~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v 540 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPAT--PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV 540 (859)
T ss_pred HHHHHHHhccCCCCCCccc--hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9952 111111 111 12223333 222 2 2334477788888888877765444443
No 194
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=83.46 E-value=1.5 Score=38.78 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=45.9
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc--cccchhchHHhhcCchH-HHHHHHHHHHH
Q 036199 506 SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA--PSEFLPKLVPFLKDATL-AVSCLVILKNM 573 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv--~aG~V~~Lv~lL~~~~~-~~~al~iL~nL 573 (710)
.-.+++++..+.+.+.+++..|+.+|+|++..-.. .+. -..+.+.|.+++.|++- +..++..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 34589999999999999999999999999853322 222 24566667777766432 44555555554
No 195
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.36 E-value=54 Score=39.11 Aligned_cols=249 Identities=13% Similarity=0.084 Sum_probs=142.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC------CCC
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN------RSG 461 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~------~~k 461 (710)
+.|.+...-+..+|+.++..+...++.- ... .+..|--+|++ ..+..+-.|+..|-.++... +|+
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~----l~p-avs~Lq~flss----p~~~lRfaAvRtLnkvAm~~P~~v~~cN~ 322 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRE----LAP-AVSVLQLFLSS----PKVALRFAAVRTLNKVAMKHPQAVTVCNL 322 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhh----cch-HHHHHHHHhcC----cHHHHHHHHHHHHHHHHHhCCccccccch
Confidence 4455556667788888888776543321 111 56666667766 66777777777887775321 222
Q ss_pred Cc---ccc---ccchHHHHHHhccCcHH------HHHHHHHHHhccCchhhHHHh-------------hhCcHHHHHHhh
Q 036199 462 IP---YLN---EDLFSLLASFLHSAAAT------EETLAILVALSSYAYFISKIV-------------ASGALASILNML 516 (710)
Q Consensus 462 ~~---i~~---~gaI~~LV~lL~s~~~~------~~Aa~~L~~Ls~~~~nk~~I~-------------~~GaI~~LV~LL 516 (710)
.. |-. .=+-.++..+|+.|... ..-+....+++ +++|..++ ..+.+..|-++|
T Consensus 323 elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 323 DLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred hHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 11 000 11344555666655431 11222222222 23332221 123456666666
Q ss_pred c-CCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHH
Q 036199 517 D-SPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVA 594 (710)
Q Consensus 517 ~-~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv 594 (710)
+ +|.-+-+.+...++..... +++.|.. ++..|..++.|.+....+..+|..|-. ||-.+... ..-|..+.
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~P-skyir~iy 472 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNP-SKYIRFIY 472 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCc-chhhHHHh
Confidence 4 4555667777766665554 5555443 345667777777777777888887754 11112222 22344444
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 595 ELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 595 ~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..+--.+..++..|+.+|.....+++. ....+.-.|...+.+.++.+|+.|.-.|+.+.+.
T Consensus 473 NRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 444446788888999999888754421 2223344556678888999999999999998843
No 196
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=83.02 E-value=6.3 Score=41.01 Aligned_cols=216 Identities=13% Similarity=0.095 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCcc--ccccchHHHHHH-------hccCc--H----H-HHHHHHHHHhccCchhhHHH
Q 036199 440 DSRAQRIGCRLLLAFVSKNRSGIPY--LNEDLFSLLASF-------LHSAA--A----T-EETLAILVALSSYAYFISKI 503 (710)
Q Consensus 440 d~~~q~~A~~~L~nL~~~~~~k~~i--~~~gaI~~LV~l-------L~s~~--~----~-~~Aa~~L~~Ls~~~~nk~~I 503 (710)
+++.+++|+..|..--....+-..+ -..|.+..|++= |..+. . + -+|.+.|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5667777766555432211111111 145666555432 22221 1 1 27888888999999999999
Q ss_pred hhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhcc--CcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHh
Q 036199 504 VASGALASILNMLDSPN-----GKFQELAIKILHNLSS--DVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMC 574 (710)
Q Consensus 504 ~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~--~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa 574 (710)
.++...--|.-.|+..+ +..+-.+++++..|.. +++....+.+.++||.-++.|..+ -...-|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887655556664332 3456778888888886 445566778899999999999544 23566777888887
Q ss_pred cCcchHHHHHhhcC-------ChHHHHH-HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHH----HhhcC
Q 036199 575 NTEHARVCVVETSG-------CLPSVAE-LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK----ISVYG 642 (710)
Q Consensus 575 ~~~e~r~~i~~~~g-------~I~~Lv~-lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~----L~~~g 642 (710)
.++.|-..+.++.. .+..+|. +....+++.-++.+.+-..|+.+. ..+..+.+ ..-..|-+ -...+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~~-~LP~~Lrd~~f~~~l~~ 245 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALRQ-CLPDQLRDGTFSNILKD 245 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHHH-HS-GGGTSSTTTTGGCS
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHHH-hCcHHHhcHHHHHHHhc
Confidence 78888777765432 2333333 233579999999999999999988 33443332 22112211 11233
Q ss_pred CHHHHHHHHHHHHHh
Q 036199 643 NDKAKVSALELRRLL 657 (710)
Q Consensus 643 t~~~k~kA~~LL~~l 657 (710)
++.+|+-=..|+..+
T Consensus 246 D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 246 DPSTKRWLQQLLSNL 260 (262)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 556666666666554
No 197
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=0.42 Score=39.54 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=33.3
Q ss_pred CCCcccccCCccccCC-ceec-CCCCccchhhHHHHhhh--CCCCCCCCCCccC
Q 036199 265 IPEVFKCPLSLRLMYD-PVVI-ESGQTFERMWIQKWFEE--GNHTCPKTKMKLV 314 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D-PV~~-~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l~ 314 (710)
.|.+=.||-|.-.=-| |.++ -|.|.|-++||.+|+.. ....||.|+|...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3444455555433322 3333 88999999999999873 4567999998653
No 198
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.69 E-value=1.9 Score=29.30 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 509 LASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 509 I~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
+|.+++++.+++++++..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998863
No 199
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.62 E-value=4.8 Score=47.34 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=116.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHH
Q 036199 434 DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASIL 513 (710)
Q Consensus 434 s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV 513 (710)
.+..+.++..+..|+..+..+ +..-+..-.+.+|...|+++......++++......+.+.......|.++.|-
T Consensus 93 kD~~d~np~iR~lAlrtm~~l------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCL------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeE------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 334557788887776665544 11113455778888888888775444444444444566677777899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCccc-ccccccccchhchHHhhcCchHHHHHHHHHHHHhcC-cc-hHHHHHhhcCCh
Q 036199 514 NMLDSPNGKFQELAIKILHNLSSDVDI-QSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNT-EH-ARVCVVETSGCL 590 (710)
Q Consensus 514 ~LL~~~~~~~~~~A~~aL~nLs~~~en-~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~-~e-~r~~i~~~~g~I 590 (710)
+++.+.++.+..+|+.+|..+...+.+ -..-...-.+..++..|.+-. ...-+.+|..|+.. +. .+.+. ..+
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~-EW~qi~IL~~l~~y~p~d~~ea~----~i~ 241 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT-EWGQIFILDCLAEYVPKDSREAE----DIC 241 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh-hhhHHHHHHHHHhcCCCCchhHH----HHH
Confidence 999999999999999999999865543 222222333444444442210 11224556666651 11 11111 123
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC
Q 036199 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 591 ~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
..+...|.+.++.+.-.|+.+++.+...-.. .....-.-+-++|+.++...+
T Consensus 242 ~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 242 ERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence 3445556666777777777777776655433 222233334466666655554
No 200
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=82.29 E-value=0.57 Score=38.72 Aligned_cols=47 Identities=21% Similarity=0.576 Sum_probs=22.8
Q ss_pred cccccCCccccC-C---ceec----CCCCccchhhHHHHhhh--CC--------CCCCCCCCccC
Q 036199 268 VFKCPLSLRLMY-D---PVVI----ESGQTFERMWIQKWFEE--GN--------HTCPKTKMKLV 314 (710)
Q Consensus 268 ~f~CPI~~~~m~-D---PV~~----~~G~ty~r~~I~~w~~~--g~--------~~cP~t~~~l~ 314 (710)
+..|+||..... + |+++ .||++|=..|+.+||.. +. .+||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 5554 57999999999999863 21 24999988764
No 201
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=82.28 E-value=1.2 Score=33.93 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=21.9
Q ss_pred ccCCcccc--CCceec--CCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 271 CPLSLRLM--YDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 271 CPI~~~~m--~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
||+|.+-| +|--.. +||+.+||.|..+-...++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 221222 67999999998887776788899999875
No 202
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=81.69 E-value=7.3 Score=46.91 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=108.7
Q ss_pred HHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHHHHHHHHHHHhccCch--hhHHH
Q 036199 426 EPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAY--FISKI 503 (710)
Q Consensus 426 ~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~--nk~~I 503 (710)
...++.|.+ ...|.++++.|+.++..+..+-......--...++.+++=|+++.++-.|+.++..++...- +...+
T Consensus 571 ~~tl~rL~a--~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~ 648 (1233)
T KOG1824|consen 571 DCTLQRLKA--TDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPV 648 (1233)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhh
Confidence 334455554 34688999999999887743221112222356788888888888887788888876664432 22222
Q ss_pred hhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchH
Q 036199 504 VASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHAR 580 (710)
Q Consensus 504 ~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r 580 (710)
+ ..+++.|+..++......+...+.++-.|..+- ++...-.-.-++..+-.++.+. .++..|+.+|.-++......
T Consensus 649 l-~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 649 L-TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 2 345788888886555555555566666665422 1111111111222233344443 45888999999998866554
Q ss_pred HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 581 VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 581 ~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
..-.. +-.++.++.+++ ||-.+-.|..+++.
T Consensus 728 l~~~~-~~iL~~ii~ll~--Spllqg~al~~~l~ 758 (1233)
T KOG1824|consen 728 LLKIS-NPILDEIIRLLR--SPLLQGGALSALLL 758 (1233)
T ss_pred HHHHh-hhhHHHHHHHhh--CccccchHHHHHHH
Confidence 43333 567888888886 45566666666544
No 203
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=81.68 E-value=0.37 Score=56.94 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=38.5
Q ss_pred ccccCCccccCCceecCCCCccchhhHHHHhhh-CCCCCCCCCCccCC
Q 036199 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-GNHTCPKTKMKLVC 315 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~ 315 (710)
+.|+||.+ ..+||++.|||-+|++|+.+-+.. ....||.|+..+.+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 899999999999999999998764 33359999765544
No 204
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=81.67 E-value=15 Score=39.21 Aligned_cols=218 Identities=13% Similarity=0.100 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHHhccCCC-CCccccccchHHHHHHhccCcH--H--HHHHHHHHHhccCchhhHHHhh-hCcHHHHH
Q 036199 440 DSRAQRIGCRLLLAFVSKNRS-GIPYLNEDLFSLLASFLHSAAA--T--EETLAILVALSSYAYFISKIVA-SGALASIL 513 (710)
Q Consensus 440 d~~~q~~A~~~L~nL~~~~~~-k~~i~~~gaI~~LV~lL~s~~~--~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV 513 (710)
+.-++--|+.+|.++.-..+. ++..++...-..++.+|++... + -+.+-+++-|+-.......|-. ...|.-|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 344566677777777443332 2333344455667777776443 2 4788888888877776655554 56788888
Q ss_pred HhhcCCC-HHHHHHHHHHHHHhcc-Cc-ccccccccccchhchHHhhc-----CchHHHH---HHHHHH----HHhcCcc
Q 036199 514 NMLDSPN-GKFQELAIKILHNLSS-DV-DIQSHIAPSEFLPKLVPFLK-----DATLAVS---CLVILK----NMCNTEH 578 (710)
Q Consensus 514 ~LL~~~~-~~~~~~A~~aL~nLs~-~~-en~~~iv~aG~V~~Lv~lL~-----~~~~~~~---al~iL~----nLa~~~e 578 (710)
.+.++.. ..+.+.+++++.|++. .+ +....+.-.|-+.+-++.|. |++++.. .-..|. .||.-++
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 8886553 4567788999999986 22 34445555666666677763 3333111 111111 1111111
Q ss_pred ------------------------hHHHHHhh-cCChHHHHHHhhcCCHH-HHHHHHHHHHHHhcCChHHHHHHHhCCch
Q 036199 579 ------------------------ARVCVVET-SGCLPSVAELLEIGSEE-DQEHAVAILLCLCSQRDQYCKLVMNEGVI 632 (710)
Q Consensus 579 ------------------------~r~~i~~~-~g~I~~Lv~lL~~~s~~-~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v 632 (710)
+...+... -..+..|.++|+...+. .-..|+.=+..+-...|+...++.+.|+=
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 11222221 12456777788775554 34456666677777778889999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 633 PSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 633 ~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
..+++|..+.++++|-.|.+.++.+
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999988754
No 205
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.54 E-value=5.1 Score=41.08 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHhhc------CChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchH
Q 036199 562 LAVSCLVILKNMCNTEHARVCVVETS------GCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIP 633 (710)
Q Consensus 562 ~~~~al~iL~nLa~~~e~r~~i~~~~------g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~ 633 (710)
-++.|+.+|..|+-.+.+-..|..+. ..+..|+++|. .+++..+|-|+.+|.+||..+.. .+....+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 38999999999999888887776632 13445555554 36888999999999999999865 457788899999
Q ss_pred HHHHHhhcCCHHHHH
Q 036199 634 SLVKISVYGNDKAKV 648 (710)
Q Consensus 634 ~Lv~L~~~gt~~~k~ 648 (710)
.|+....++..-+..
T Consensus 220 ~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQ 234 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998876555443
No 206
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.50 E-value=3.7 Score=37.59 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=56.4
Q ss_pred ChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 589 CLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 589 ~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
.+..|+++|.. .++.....|+.=|..++...+.-+..+.+.|+=..++.|+.+.++.+|..|...++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46788888843 5777777788888888988888888999999999999999999999999999988844
No 207
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.23 E-value=1 Score=48.85 Aligned_cols=49 Identities=14% Similarity=0.369 Sum_probs=40.0
Q ss_pred CCcccccCCccccCCce-----e---cCCCCccchhhHHHHhhhC------CCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYDPV-----V---IESGQTFERMWIQKWFEEG------NHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV-----~---~~~G~ty~r~~I~~w~~~g------~~~cP~t~~~l~ 314 (710)
-.++.|=||++.-.+++ - ..|.|+||-.||.+|-... ...||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46799999999999998 3 4699999999999997422 367999987543
No 208
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.21 E-value=41 Score=36.21 Aligned_cols=170 Identities=17% Similarity=0.133 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcc--ccccchHHHHHHhccCcHHH--HHHHHHHHhccC---chhhHHHhhhCcHHHHH
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPY--LNEDLFSLLASFLHSAAATE--ETLAILVALSSY---AYFISKIVASGALASIL 513 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i--~~~gaI~~LV~lL~s~~~~~--~Aa~~L~~Ls~~---~~nk~~I~~~GaI~~LV 513 (710)
...++.|+..|.++......-..+ ...-.+..+.+.++.|...+ .|+.++.-|+.. ......+. ....|.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHH
Confidence 455555555555543221110111 12335677778888777643 444545444432 23333333 24678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHhccC----cccccccccccchhchHH--hh------------cCchHHHHHHHHHHHH
Q 036199 514 NMLDSPN--GKFQELAIKILHNLSSD----VDIQSHIAPSEFLPKLVP--FL------------KDATLAVSCLVILKNM 573 (710)
Q Consensus 514 ~LL~~~~--~~~~~~A~~aL~nLs~~----~en~~~iv~aG~V~~Lv~--lL------------~~~~~~~~al~iL~nL 573 (710)
.++.+++ +..+..++.+|.-++.. .+..... ...+..+.. .+ .++.+...|+..-+.|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8887654 34445555555554431 1111100 011110000 01 1234566666666666
Q ss_pred hc-CcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036199 574 CN-TEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 574 a~-~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
.. .+... ....+ ..++.|+.+|.+.+..+|-.|-.+|.-|
T Consensus 214 lt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 214 LTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 65 33322 23333 4699999999999999998877776554
No 209
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.10 E-value=0.93 Score=50.18 Aligned_cols=51 Identities=14% Similarity=0.374 Sum_probs=37.9
Q ss_pred CCCcccccCCcccc-----------------CCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLM-----------------YDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m-----------------~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+-..--|+||+.-. ++=..++|.|.|-|.|+++|.+.-.-.||+|+.+|++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44446799997521 1123458999999999999998444589999999875
No 210
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=81.07 E-value=2.9 Score=34.86 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccCcccccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcchHHHHHh
Q 036199 524 QELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEHARVCVVE 585 (710)
Q Consensus 524 ~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~~i~~ 585 (710)
.+.|++|+.++++.+.....+-+.++|+.++++... -.++--|.-+|..++.+.+|...+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 578999999999998888888889999999999854 35688899999999999999988766
No 211
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.94 E-value=3.7 Score=37.64 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=55.5
Q ss_pred cccccccc--ccchhchHHhhcC---chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHH
Q 036199 539 DIQSHIAP--SEFLPKLVPFLKD---ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612 (710)
Q Consensus 539 en~~~iv~--aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL 612 (710)
+|..++-+ -..+..|+++|.. +....-|+.=|+.++. .|+||..+-+ .|+=..+.++|.+.+++++.+|+-++
T Consensus 32 ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 32 ENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 35555544 3467889999943 3345556667777877 7899888866 78888999999999999999999887
Q ss_pred HHHh
Q 036199 613 LCLC 616 (710)
Q Consensus 613 ~~Lc 616 (710)
..+-
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 212
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.88 E-value=1.2 Score=47.97 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=42.1
Q ss_pred cccccCCccccCC---ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 268 VFKCPLSLRLMYD---PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 268 ~f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
.+.|.|++++|-| |++.+.|++|-..+|+.|-...+-+||.++..++..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 3789999999987 999999999999999999664447899999877653
No 213
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.68 E-value=3 Score=28.33 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.3
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
+|.+++++...++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999988753
No 214
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.64 E-value=0.39 Score=55.65 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=39.5
Q ss_pred cccccCCccccCCceec---CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 268 VFKCPLSLRLMYDPVVI---ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~---~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+-.||+|..-+.|-.+. .|+|-||.+||..|-. ...|||.++..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 46799999999998774 7999999999999976 46699999877654
No 215
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=79.51 E-value=12 Score=45.18 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=101.7
Q ss_pred CCccccccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhc
Q 036199 461 GIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDS-----PNGKFQELAIKILHNLS 535 (710)
Q Consensus 461 k~~i~~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~-----~~~~~~~~A~~aL~nLs 535 (710)
|...+...+.+..|.-|.+....+.--...+.++ ..+.+.|++..|+.++.+ +........+..|...+
T Consensus 77 R~~Gl~geAtE~~v~~l~~~~~~~~d~e~~~~~~------~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~ 150 (802)
T PF13764_consen 77 RMRGLDGEATEEFVESLEDDSEEEEDPEQEFKIA------SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC 150 (802)
T ss_pred eecCCCCccchhhHhhccCccccccCHHHHHHHH------HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH
Confidence 3344566677788887765432111111111111 123568999999999854 33456666777777788
Q ss_pred cCcccccccccccchhchHHhh----cC------chHHHHHHHHHHHHhcCcch--H-HHH--HhhcC----C---hHHH
Q 036199 536 SDVDIQSHIAPSEFLPKLVPFL----KD------ATLAVSCLVILKNMCNTEHA--R-VCV--VETSG----C---LPSV 593 (710)
Q Consensus 536 ~~~en~~~iv~aG~V~~Lv~lL----~~------~~~~~~al~iL~nLa~~~e~--r-~~i--~~~~g----~---I~~L 593 (710)
.-+.|+.++++.|+++.|++.| .+ ..+.+..+.++..|...... . ... ....| . +..|
T Consensus 151 Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~l 230 (802)
T PF13764_consen 151 KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEML 230 (802)
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHH
Confidence 8899999999999999999988 22 35678778877777652211 1 000 11011 2 5555
Q ss_pred HHHhhc----CCHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 036199 594 AELLEI----GSEEDQEHAVAILLCLCSQRDQYCKLVMN 628 (710)
Q Consensus 594 v~lL~~----~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~ 628 (710)
++.+.+ .++...+.-+.+|-.|+.++.+..+.+++
T Consensus 231 L~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 231 LERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 555553 36788888899999999888665555543
No 216
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=79.41 E-value=95 Score=33.84 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=136.4
Q ss_pred cccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCC-cc-----cc-ccchHHHHHHhccCcHHHHHHHHH
Q 036199 419 LSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGI-PY-----LN-EDLFSLLASFLHSAAATEETLAIL 490 (710)
Q Consensus 419 I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~-~i-----~~-~gaI~~LV~lL~s~~~~~~Aa~~L 490 (710)
+...|.+..|+..|.. -+-++++.++.+..++.... .++. .. .. ...+..|+.--.+++..-.+-..|
T Consensus 72 i~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence 3456888888888876 68899999999998885432 2222 11 12 344444444444444445777888
Q ss_pred HHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccccccccc---cchhchHHhhcCch--HHH
Q 036199 491 VALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPS---EFLPKLVPFLKDAT--LAV 564 (710)
Q Consensus 491 ~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~a---G~V~~Lv~lL~~~~--~~~ 564 (710)
+.+..++.....|.....+-.+.+....++-++..+|..++..|-.. +.-....... ..+.....+|.+++ ...
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 89999988788888888899999999999999999999999986653 4433444433 34556677776654 478
Q ss_pred HHHHHHHHHhcCcchHHHHH---hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 565 SCLVILKNMCNTEHARVCVV---ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 565 ~al~iL~nLa~~~e~r~~i~---~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.++..|+.|-..+.+...+. ....-+..++.+|+..+..+|-.|..++--.-.++
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 89999999988887766543 33455778888899999999999999986555554
No 217
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=79.30 E-value=24 Score=42.35 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=88.0
Q ss_pred hcCCCHHHHHHHHHHHH-HHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 390 LTELNWDCQCKVIEDYE-TRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~-~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
|.+++...+..|++.+- .+..+++ . .-..+.+++...+ .|.+..+-.-.-|.+.......... =
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m------ssLf~dViK~~~t----rd~ElKrL~ylYl~~yak~~P~~~l----L 92 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M------SSLFPDVIKNVAT----RDVELKRLLYLYLERYAKLKPELAL----L 92 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h------HHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhccCHHHHH----H
Confidence 44555666777777553 3333322 1 1123444444443 5666666555555555443221111 2
Q ss_pred chHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc
Q 036199 469 LFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 469 aI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
++..+.+=|.+++.. -.|..+|..|=. .+ .-...++++.+++.++++.+++.|+-|++++=. -++....+
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~-~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~ 164 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV-KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHE 164 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCh-HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhc
Confidence 445555555566553 244444433211 11 112357777778888888888888877777642 22334556
Q ss_pred ccchhchHHhhc--CchHHHHHHHHHHHHhc
Q 036199 547 SEFLPKLVPFLK--DATLAVSCLVILKNMCN 575 (710)
Q Consensus 547 aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~ 575 (710)
.|.+..+..++. +|.+...|+.+|..+..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 677777777773 35667777777776644
No 218
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=79.14 E-value=27 Score=38.46 Aligned_cols=232 Identities=19% Similarity=0.206 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHH-hccCCCCCccccccch
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLF 470 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI 470 (710)
+.+...++.++-+|..-+. +++.|..+...|.+..+++.+... .+...-..++.+++-+ +.+..+-......+..
T Consensus 33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~---~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~ 108 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDA---PDDDILALATAAILYVLSRDGLNMHLLLDRDSL 108 (361)
T ss_pred CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccc---cchHHHHHHHHHHHHHHccCCcchhhhhchhHH
Confidence 3456778888887776665 567788899999999999999552 2222333343444444 4444433333356677
Q ss_pred HHHHHHhccCcH---HHHHH-HHHHHhccCchhhHHHhhhCcHHHHHHhhc---------CCCHHHHHHHHHHHHHhc--
Q 036199 471 SLLASFLHSAAA---TEETL-AILVALSSYAYFISKIVASGALASILNMLD---------SPNGKFQELAIKILHNLS-- 535 (710)
Q Consensus 471 ~~LV~lL~s~~~---~~~Aa-~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~---------~~~~~~~~~A~~aL~nLs-- 535 (710)
..++.+|.-... ....- .-=.+++. +. .+.+..+.+++. ......+..|..+|..++
T Consensus 109 ~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 109 RLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred HHHHHHhccccccccccchhhhhhhhhhH-------HH-HHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 777888871110 00000 00001111 10 111111111210 111233444555555552
Q ss_pred ----------c---CcccccccccccchhchHHhhcC----c--------------hHHHHHHHHHHHHhc-CcchHHHH
Q 036199 536 ----------S---DVDIQSHIAPSEFLPKLVPFLKD----A--------------TLAVSCLVILKNMCN-TEHARVCV 583 (710)
Q Consensus 536 ----------~---~~en~~~iv~aG~V~~Lv~lL~~----~--------------~~~~~al~iL~nLa~-~~e~r~~i 583 (710)
. .+--|..+.+.|++..+++++.+ . ...+.|+.+|.+-+. ++++...+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 1 12235667788999999999741 0 136778999999876 56666666
Q ss_pred HhhcC-ChHHHHH-Hhhc---CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHH
Q 036199 584 VETSG-CLPSVAE-LLEI---GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSL 635 (710)
Q Consensus 584 ~~~~g-~I~~Lv~-lL~~---~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~L 635 (710)
....+ .++.+.. ++.. ..+.....++.+|.|++.+++..+..+...++...+
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~ 317 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQL 317 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccch
Confidence 55433 2333333 3332 223335789999999999997766666655544433
No 219
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.85 E-value=1.2 Score=46.71 Aligned_cols=43 Identities=28% Similarity=0.593 Sum_probs=35.7
Q ss_pred CcccccCCccccCC---ceecCCCCccchhhHHHHhhhCC--CCCCCC
Q 036199 267 EVFKCPLSLRLMYD---PVVIESGQTFERMWIQKWFEEGN--HTCPKT 309 (710)
Q Consensus 267 ~~f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~~g~--~~cP~t 309 (710)
.-|+||+..+.-.| ||.++|||..-+.+..+--+.|. ..||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 45999999998876 99999999999999888766663 448877
No 220
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=1.1e+02 Score=36.14 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=43.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccc
Q 036199 390 LTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDL 469 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ga 469 (710)
|.+.++--++-|+..+...-. -+.++. +-+-+-++|.++ +...-++..|+.+|+.+..... ..+-..+.
T Consensus 120 L~srn~~fv~LAL~~I~niG~--re~~ea-----~~~DI~KlLvS~--~~~~~vkqkaALclL~L~r~sp--Dl~~~~~W 188 (938)
T KOG1077|consen 120 LSSRNPTFVCLALHCIANIGS--REMAEA-----FADDIPKLLVSG--SSMDYVKQKAALCLLRLFRKSP--DLVNPGEW 188 (938)
T ss_pred hhcCCcHHHHHHHHHHHhhcc--HhHHHH-----hhhhhHHHHhCC--cchHHHHHHHHHHHHHHHhcCc--cccChhhH
Confidence 334445556666666544321 112221 122233677663 2334566677777777754432 12223467
Q ss_pred hHHHHHHhccCcH
Q 036199 470 FSLLASFLHSAAA 482 (710)
Q Consensus 470 I~~LV~lL~s~~~ 482 (710)
+..++.+|+..+-
T Consensus 189 ~~riv~LL~D~~~ 201 (938)
T KOG1077|consen 189 AQRIVHLLDDQHM 201 (938)
T ss_pred HHHHHHHhCcccc
Confidence 8899999987653
No 221
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.42 E-value=1.3 Score=47.63 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=35.0
Q ss_pred CcccccCCccccCCce------ecCCCCccchhhHHHHhhhC--CCCCCCCCCccCCCC
Q 036199 267 EVFKCPLSLRLMYDPV------VIESGQTFERMWIQKWFEEG--NHTCPKTKMKLVCQS 317 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV------~~~~G~ty~r~~I~~w~~~g--~~~cP~t~~~l~~~~ 317 (710)
-.-.|.||-+.+ |+ |-.|||+|.-.|+..||.-. +.+||.|+-.+....
T Consensus 3 i~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 3 IMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred ccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 344688886655 33 23599999999999999843 358999985554443
No 222
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.08 E-value=3.8 Score=46.96 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=92.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc---cccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHH
Q 036199 508 ALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH---IAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVC 582 (710)
Q Consensus 508 aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~---iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~ 582 (710)
.|..++.+|++.++.++..|+.....|+.--.+|.. +...|.| |..-|. .+++....+.++..+-+.-.-+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 466677888999999999998888777743333322 2223322 333342 245544444444444332111110
Q ss_pred HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH---HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY---CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~---~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
---..|.+|.|.-+|++...+++++.+..+..+|.+++++ +.-|. +-=-|++++++.+...|+.|..-+..+.+
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 0011478999999999999999999999999999998763 22111 12246777888888999998876665544
No 223
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.35 E-value=55 Score=38.66 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHH
Q 036199 396 DCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLAS 475 (710)
Q Consensus 396 e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~ 475 (710)
-++.+|+-.+..+.+.+++. +--.++...++.+|.. .+..+-..++.++-.++..... .-.++++.-|.
T Consensus 163 ~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D----~~~gv~ta~~sLi~~lvk~~p~----~yk~~~~~avs 231 (938)
T KOG1077|consen 163 YVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDD----QHMGVVTAATSLIEALVKKNPE----SYKTCLPLAVS 231 (938)
T ss_pred HHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCc----cccceeeehHHHHHHHHHcCCH----HHhhhHHHHHH
Confidence 34556666676777666652 2224678889999965 3455555555555555543211 11234444443
Q ss_pred Hhc-----cCcH-H-------------HHHHHHHHHhccCc--hhhHHHhhhCcHHHHHHhhcCCC--HHH-HHHHH-HH
Q 036199 476 FLH-----SAAA-T-------------EETLAILVALSSYA--YFISKIVASGALASILNMLDSPN--GKF-QELAI-KI 530 (710)
Q Consensus 476 lL~-----s~~~-~-------------~~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~LL~~~~--~~~-~~~A~-~a 530 (710)
-|. .+.. + ...+.+|.++-..+ .+|.... .++..++...++.. ..+ ..+|- .+
T Consensus 232 ~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naV 309 (938)
T KOG1077|consen 232 RLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAV 309 (938)
T ss_pred HHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHH
Confidence 332 1111 1 24455554443222 2332222 23333333333211 111 11221 12
Q ss_pred HH---HhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHH
Q 036199 531 LH---NLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEE 603 (710)
Q Consensus 531 L~---nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~ 603 (710)
|| +|..+ +.....++ .++..|-++|.+ .+++-.|+..+..||+++....++-.+ ...++..|++ .+..
T Consensus 310 LFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 310 LFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchH
Confidence 22 33332 23333332 356667777754 577888999999999988777777764 6788888884 6888
Q ss_pred HHHHHHHHHHHHhcCC
Q 036199 604 DQEHAVAILLCLCSQR 619 (710)
Q Consensus 604 ~ke~A~~aL~~Lc~~~ 619 (710)
++..|+..|+.+|..+
T Consensus 385 irrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHHHHHHhchh
Confidence 9999999999999876
No 224
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=75.22 E-value=71 Score=32.66 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=116.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhc-ccCCcHHHHHHHhhc-------cccC-CCHHHHHHHHHHHHHHhccC
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSL-SSTNFVEPLIRFLRD-------ARDL-HDSRAQRIGCRLLLAFVSKN 458 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I-~~~G~I~~LV~lL~s-------~~~~-~d~~~q~~A~~~L~nL~~~~ 458 (710)
..+..+++.+| |+.+|..--+..++-...+ ...|..-.|++-+-+ ..-+ ....-..+|+.+|..++++.
T Consensus 54 cqlv~g~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShP 131 (315)
T COG5209 54 CQLVVGNPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHP 131 (315)
T ss_pred HHHhcCCHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCc
Confidence 44556666655 7777766555555543333 345665555543322 1111 11223456777777789999
Q ss_pred CCCCccccccchHHHHHHhccCcH---H----HHHHHHHHHhccCch-hh-HHHhhhCcHHHHHHhhcCCCHHHHHHHHH
Q 036199 459 RSGIPYLNEDLFSLLASFLHSAAA---T----EETLAILVALSSYAY-FI-SKIVASGALASILNMLDSPNGKFQELAIK 529 (710)
Q Consensus 459 ~~k~~i~~~gaI~~LV~lL~s~~~---~----~~Aa~~L~~Ls~~~~-nk-~~I~~~GaI~~LV~LL~~~~~~~~~~A~~ 529 (710)
+.|...+++-.=-.|...|...+. . -.+.+++..|-.+++ +. ..+.....||.+++++..|+.-.+.-|+-
T Consensus 132 etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaif 211 (315)
T COG5209 132 ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIF 211 (315)
T ss_pred chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 999888877654445555553322 1 278899988886553 33 33345789999999999998888888888
Q ss_pred HHHHhccCccccccccc--------ccchhchHHhh---cCchHHHHHHHHHHHHhcCcchHHHH
Q 036199 530 ILHNLSSDVDIQSHIAP--------SEFLPKLVPFL---KDATLAVSCLVILKNMCNTEHARVCV 583 (710)
Q Consensus 530 aL~nLs~~~en~~~iv~--------aG~V~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i 583 (710)
++..+-.++..-..+.+ ...+..++.-+ ....+...++.+--.||..++.|..+
T Consensus 212 I~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 212 IFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 77777666655443322 11122222222 12345666677667777777777655
No 225
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.78 E-value=1.2 Score=52.94 Aligned_cols=49 Identities=18% Similarity=0.496 Sum_probs=35.6
Q ss_pred CCcccccCCccccC--C---cee--cCCCCccchhhHHHHhhh-CCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMY--D---PVV--IESGQTFERMWIQKWFEE-GNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~--D---PV~--~~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~ 314 (710)
...-.|+||--++. | |-- -.|.+.|--+|+.+||.+ |+.+||.|+..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34457999988764 3 211 145688989999999984 7889999986543
No 226
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=74.54 E-value=61 Score=35.99 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=72.0
Q ss_pred ccchHHHHHHhccCcH-----HHHHHHHHHHhccCch-hhHHHhhhCcHHHHHHhhc-CC---CHHHHHHHHHHHHHhcc
Q 036199 467 EDLFSLLASFLHSAAA-----TEETLAILVALSSYAY-FISKIVASGALASILNMLD-SP---NGKFQELAIKILHNLSS 536 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~-----~~~Aa~~L~~Ls~~~~-nk~~I~~~GaI~~LV~LL~-~~---~~~~~~~A~~aL~nLs~ 536 (710)
......|..++.+... .-.|+.++..+..++- .-..+.++|.++.+++.+. .+ +.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 3445566667766542 2478888887776554 4455557999999999887 44 46777777788899999
Q ss_pred CcccccccccccchhchHHhhcCch
Q 036199 537 DVDIQSHIAPSEFLPKLVPFLKDAT 561 (710)
Q Consensus 537 ~~en~~~iv~aG~V~~Lv~lL~~~~ 561 (710)
|.+....+.+.+.++.+.+++.+++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999999999999999999997653
No 227
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=74.38 E-value=8.1 Score=40.28 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=73.0
Q ss_pred HHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCc-
Q 036199 485 ETLAILVALS-SYAYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDA- 560 (710)
Q Consensus 485 ~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~- 560 (710)
.|+.+|.-++ .++..|..+....++..|+++| ....+.++..++.+|..+.. ++.|....-+.||+..++.++++.
T Consensus 110 ~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~ 189 (257)
T PF08045_consen 110 LALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS 189 (257)
T ss_pred HHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence 5777887666 6778888888999999999999 44568888888888887664 789999888999999999999653
Q ss_pred ---hHHHHHHHHHHHHhc
Q 036199 561 ---TLAVSCLVILKNMCN 575 (710)
Q Consensus 561 ---~~~~~al~iL~nLa~ 575 (710)
++.-+++..|.-...
T Consensus 190 ~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 190 TDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccHHHhHHHHHHHHHHHc
Confidence 556677777765544
No 228
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=74.37 E-value=1.5 Score=47.34 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=38.8
Q ss_pred cccCCccccCCceecCCCCccchhhHHHHhhh-CCCCCCCCCCccCC
Q 036199 270 KCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-GNHTCPKTKMKLVC 315 (710)
Q Consensus 270 ~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~ 315 (710)
+|-||-+==+|=-|-+|||-.|-.|+-.|.++ +..+||.|+-.+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 79999998899667799999999999999864 47899999855543
No 229
>PF04641 Rtf2: Rtf2 RING-finger
Probab=73.72 E-value=3.2 Score=43.47 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=31.1
Q ss_pred cccccCCccccCCceec-CCCCccchhhHHHHhhhC
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEG 302 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g 302 (710)
-+.|+||++.+.+||+. .-|+-|.+.+|-.|+-..
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 57899999999999865 679999999999998754
No 230
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.59 E-value=7.4 Score=45.13 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=81.7
Q ss_pred chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcCc--hHHHHHHHHHHHH
Q 036199 497 AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNM 573 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nL 573 (710)
++.-..|..+|+-.++|.-|.++-.+++++|+..++.|+.+ +.- ...++..|++++.|+ .++.+|+.+|..+
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F-----A~~aldfLvDMfNDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF-----AVRALDFLVDMFNDEIEVVRLKAIFALTMI 437 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44555677899999999999888889999999999999964 332 234678899999774 6788899999998
Q ss_pred hcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 574 a~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
+.+-.-+. .-++.+.+-|...++++++..-..|.+ |..+
T Consensus 438 s~~l~i~e------eql~~il~~L~D~s~dvRe~l~elL~~-~~~~ 476 (823)
T KOG2259|consen 438 SVHLAIRE------EQLRQILESLEDRSVDVREALRELLKN-ARVS 476 (823)
T ss_pred HHHheecH------HHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCC
Confidence 87622222 235677777888888888877666544 4444
No 231
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.47 E-value=1 Score=34.88 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=34.3
Q ss_pred cccCCccccCCceecCCCC-ccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 270 KCPLSLRLMYDPVVIESGQ-TFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 270 ~CPI~~~~m~DPV~~~~G~-ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
.|-||.+--.|-|+-.||| ..|-.|=.+-+..++.+||.|+.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 4999999999999999998 3456665554455788999998764
No 232
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.76 E-value=53 Score=40.90 Aligned_cols=215 Identities=16% Similarity=0.119 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc--cCCCCCccccccc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS--KNRSGIPYLNEDL 469 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~--~~~~k~~i~~~ga 469 (710)
+.+..+|.++-..|..++...+ .... ....+..+-+.|.....+.+.-+|..+..+|..+.. +.+... .-...
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s-~~~~--~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~--~i~k~ 739 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPS-GEGL--VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD--LIPKL 739 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCc-hhhH--HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH--HHHHH
Confidence 3466778888777777765411 1111 111233344444433333556677777777777643 212222 12334
Q ss_pred hHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh------hCcHHHHHHhhcCC--CHHHHHHH--HHHHHHhccC
Q 036199 470 FSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA------SGALASILNMLDSP--NGKFQELA--IKILHNLSSD 537 (710)
Q Consensus 470 I~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~------~GaI~~LV~LL~~~--~~~~~~~A--~~aL~nLs~~ 537 (710)
|+.++=.++.-+. +++|.+.|.++.. .....+ ...|...+.++..| .......| +-++..+..
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~- 814 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ- 814 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH-
Confidence 4544444443332 4688888887763 111111 22577777777655 22222222 333333332
Q ss_pred cccccccccccchhchHHhh------cCchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFL------KDATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL------~~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~ 610 (710)
+-..+...+.++.+++.+ ..+.+...|++.+..++. -++....--. +..++.+..+++..+...+...-.
T Consensus 815 --e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 815 --EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred --HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222344455555555554 346889999999999887 3444333322 346788888777777777777776
Q ss_pred HHHHHhcCC
Q 036199 611 ILLCLCSQR 619 (710)
Q Consensus 611 aL~~Lc~~~ 619 (710)
.|--|+...
T Consensus 892 LlekLirkf 900 (1176)
T KOG1248|consen 892 LLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHh
Confidence 666665443
No 233
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=72.04 E-value=90 Score=34.98 Aligned_cols=128 Identities=21% Similarity=0.266 Sum_probs=80.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cc--------ccccccccc----chhchHHhhcC--chHHHHHHHHHHH
Q 036199 508 ALASILNMLDSPNGKFQELAIKILHNLSSD-VD--------IQSHIAPSE----FLPKLVPFLKD--ATLAVSCLVILKN 572 (710)
Q Consensus 508 aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~e--------n~~~iv~aG----~V~~Lv~lL~~--~~~~~~al~iL~n 572 (710)
.+..|+++|.+ ++....|+.++.-|..+ ++ |.+.+.+.- .+|.|++...+ .......+.+|..
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 46778888866 66677788888877765 22 223333333 45566655543 2356677888888
Q ss_pred HhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHH
Q 036199 573 MCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638 (710)
Q Consensus 573 La~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L 638 (710)
+-.+-.-...+-+-+..+|.|++-|...++..+..++.+|..+....++....-+ ..+||.|+.+
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~l 414 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLKL 414 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHhc
Confidence 8774332222223245788888888889999999999999998888744322211 1445555543
No 234
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=72.00 E-value=13 Score=38.76 Aligned_cols=125 Identities=19% Similarity=0.126 Sum_probs=81.0
Q ss_pred HHHHHHHHHhccCchhhHHHhhh-C-cHHHHHHhhcCC----CHHHHHHHHHHHHHhccCc-ccc-cccccccchhchHH
Q 036199 484 EETLAILVALSSYAYFISKIVAS-G-ALASILNMLDSP----NGKFQELAIKILHNLSSDV-DIQ-SHIAPSEFLPKLVP 555 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~-G-aI~~LV~LL~~~----~~~~~~~A~~aL~nLs~~~-en~-~~iv~aG~V~~Lv~ 555 (710)
--+++++.|+-.+...+..+... + .|...+..+... +..++..+++.++|++..- .+. ..-.....+..++.
T Consensus 128 ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~ 207 (268)
T PF08324_consen 128 MLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIE 207 (268)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 36788888988888888877753 3 455555555444 6788999999999998632 222 12222234555555
Q ss_pred hh----cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh--cCCHHHHHHHH
Q 036199 556 FL----KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE--IGSEEDQEHAV 609 (710)
Q Consensus 556 lL----~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~--~~s~~~ke~A~ 609 (710)
.+ .+++..-.++.+|++|...+......... -++...+.... ...++.++.+.
T Consensus 208 ~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~-l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 208 VLSREESDEEALYRLLVALGTLLSSSDSAKQLAKS-LDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCC-CTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHHHHHhccChhHHHHHHH-cChHHHHHHHHhcccchHHHHHhc
Confidence 33 46788889999999999877776666652 23444444332 35677776654
No 235
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.93 E-value=20 Score=35.08 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCch-HHHHHH
Q 036199 560 ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVI-PSLVKI 638 (710)
Q Consensus 560 ~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v-~~Lv~L 638 (710)
+.++-.++.+++-|+..-. .+++ ..++.+...|...++.+|+.|+.+|..|-..+- +.-.|-+ ..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 3456667777777765322 3333 357888888999999999999999988876651 1222333 666677
Q ss_pred hhcCCHHHHHHHHHHHHHhhhccCCc
Q 036199 639 SVYGNDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 639 ~~~gt~~~k~kA~~LL~~l~~~~~~~ 664 (710)
+.+.++.++..|..++..+...++++
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccch
Confidence 78899999999999888777765544
No 236
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=71.88 E-value=2.4 Score=44.86 Aligned_cols=50 Identities=22% Similarity=0.348 Sum_probs=34.4
Q ss_pred CcccccCCccccC--Ccee--cCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 267 EVFKCPLSLRLMY--DPVV--IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 267 ~~f~CPI~~~~m~--DPV~--~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
+++ ||+|.+-|. |--. -+||...||-|...--+.-+..||.|+..++...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 345 999999884 2222 3689888888755444444678999998877653
No 237
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=71.39 E-value=1.8 Score=43.63 Aligned_cols=41 Identities=24% Similarity=0.521 Sum_probs=33.9
Q ss_pred cccccCCccccCCceec-CCCCccchhhHHHHhh-hCCCCCCC
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFE-EGNHTCPK 308 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~-~g~~~cP~ 308 (710)
+.+|||+++...-|++- .|.|-|||..|.+.+. .....||.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 57899999999999764 8999999999999987 22344775
No 238
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=70.32 E-value=28 Score=41.71 Aligned_cols=128 Identities=8% Similarity=0.044 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchH
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFS 471 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~ 471 (710)
+.+.+.++-.=.=|...++..++-.. ..+..+..+....|+.++..|+..+..+ +..-+-..+++
T Consensus 66 trd~ElKrL~ylYl~~yak~~P~~~l---------LavNti~kDl~d~N~~iR~~AlR~ls~l------~~~el~~~~~~ 130 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKPELAL---------LAVNTIQKDLQDPNEEIRGFALRTLSLL------RVKELLGNIID 130 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCHHHHH---------HHHHHHHhhccCCCHHHHHHHHHHHHhc------ChHHHHHHHHH
Confidence 44555443333344555555552111 1233333333447899999998888876 22223456889
Q ss_pred HHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 472 LLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 472 ~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
++.+++.+++.. +.|+-++.++=. -.+..+.+.|.+..+..++.+.+|.+..+|..+|+.+--
T Consensus 131 ~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 131 PIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 999999988864 577777766642 234456678899999999999999999999999988763
No 239
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=68.61 E-value=32 Score=33.51 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=71.8
Q ss_pred cchhchHHhhcCchHHHHHHHHHHHHhcCcc--hHHHHHhhcCChHHHHHHhhc---------CCHHHHHHHHHHHHHHh
Q 036199 548 EFLPKLVPFLKDATLAVSCLVILKNMCNTEH--ARVCVVETSGCLPSVAELLEI---------GSEEDQEHAVAILLCLC 616 (710)
Q Consensus 548 G~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e--~r~~i~~~~g~I~~Lv~lL~~---------~s~~~ke~A~~aL~~Lc 616 (710)
+-...+++.+.+.......+.-|...-++.. =-..+++ .||+..|+.+|.. .+......++.+|..|.
T Consensus 66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3444466666555444333333333322221 1345666 6889999998863 23456777899999998
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
........++...+++..|...+.+.+.++|..|..+|..+.
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 887655666667899999999999999999999999998663
No 240
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=68.54 E-value=81 Score=35.33 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=81.5
Q ss_pred cchhchHHhhcCchHHHHHHHHHHHHhcC-cch-------------HHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 548 EFLPKLVPFLKDATLAVSCLVILKNMCNT-EHA-------------RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 548 G~V~~Lv~lL~~~~~~~~al~iL~nLa~~-~e~-------------r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
..+..|+.+|.++++...+...+..|... ++. |+.+.. ..+|.|++-.+..+...|.+...+|.
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 45677888888888888888888888775 322 344444 36888888888877779999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+-.+-+.....-.-..++|.|++-+...+...+..+...|..+-..
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 99988765333332345788888888888888888888888765443
No 241
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=3 Score=44.39 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=37.2
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCc
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~ 312 (710)
++=+||||---=...|..+|||.-|..||.+++- ....|=.|+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktT 465 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTT 465 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecce
Confidence 6789999998888889999999999999999986 34556666543
No 242
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.60 E-value=35 Score=40.41 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCc-chHH-------HHHhhcC
Q 036199 518 SPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTE-HARV-------CVVETSG 588 (710)
Q Consensus 518 ~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~-e~r~-------~i~~~~g 588 (710)
+.+|...+.|+.++..|.. -++|...++-..-+..|- -....-+.+.++.+|+.|+..+ +-|. .++. ..
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs-sr 348 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS-SR 348 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-hc
Confidence 4567777778887777764 344444333211111111 0011224555566666665521 1111 1122 23
Q ss_pred ChHHHHHHhh-----cC------CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHH
Q 036199 589 CLPSVAELLE-----IG------SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKA 646 (710)
Q Consensus 589 ~I~~Lv~lL~-----~~------s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~ 646 (710)
-+..+|.+|+ +. +.+-+.--+.++...+..-++.. +.+|+.|++.+.+.++.+
T Consensus 349 Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 349 NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAA 412 (948)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHH
Confidence 3455555554 11 12224444555555444444433 345688888888777764
No 243
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=65.85 E-value=6.3 Score=30.60 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=22.9
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHhhh-CCCCCCCCCC
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-GNHTCPKTKM 311 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-g~~~cP~t~~ 311 (710)
+.|.||.|++-+... .+.+.+.+....+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 468999988833222 4445555554432 3567999964
No 244
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.48 E-value=34 Score=39.66 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=45.9
Q ss_pred hhchHHhhcCc--hHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 036199 550 LPKLVPFLKDA--TLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLV 626 (710)
Q Consensus 550 V~~Lv~lL~~~--~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v 626 (710)
|.++++|..|. .++..|+..|-.+|.. ++....| +..|+++|.+.++.....+-.+|..|-..++.
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv------aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k----- 129 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV------ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK----- 129 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH------HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH-----
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH------HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH-----
Confidence 34444444333 3466666666666663 3332222 34677777777777777776777666666543
Q ss_pred HhCCchHHHHHHhh---cCCHHHHHHHHHHHH
Q 036199 627 MNEGVIPSLVKISV---YGNDKAKVSALELRR 655 (710)
Q Consensus 627 ~~~G~v~~Lv~L~~---~gt~~~k~kA~~LL~ 655 (710)
|.+..|..-.. ++++.+|+++.+.|+
T Consensus 130 ---~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 130 ---GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 33344433332 566667777766553
No 245
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=65.06 E-value=3.2e+02 Score=34.14 Aligned_cols=248 Identities=15% Similarity=0.119 Sum_probs=136.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
+.|+..+..++..|++-+...+...+-+ + ....|...+.++.-. .+...=..|+.+|..++...--... .=.
T Consensus 348 s~l~d~dt~VrWSaAKg~grvt~rlp~~---L-ad~vi~svid~~~p~---e~~~aWHgacLaLAELA~rGlLlps-~l~ 419 (1133)
T KOG1943|consen 348 SALSDTDTVVRWSAAKGLGRVTSRLPPE---L-ADQVIGSVIDLFNPA---EDDSAWHGACLALAELALRGLLLPS-LLE 419 (1133)
T ss_pred HhccCCcchhhHHHHHHHHHHHccCcHH---H-HHHHHHHHHHhcCcC---CchhHHHHHHHHHHHHHhcCCcchH-HHH
Confidence 6677777788888888888888776621 1 223566666655431 3344555788888887553311110 123
Q ss_pred cchHHHHHHhcc---------Cc-HHHHHHHHHHHhccCchhh--HHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 468 DLFSLLASFLHS---------AA-ATEETLAILVALSSYAYFI--SKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 468 gaI~~LV~lL~s---------~~-~~~~Aa~~L~~Ls~~~~nk--~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
.++|.++.-|.- |. .+..|+-+.+.++..-+.. ..+...=+--.|...+-+....++..|..|+...-
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 677777776642 11 1346776777776432211 11111111222334446777889999999998766
Q ss_pred cCcccccccccccchhchHHhhcCc---hH--HHHHHHHH-HHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHH
Q 036199 536 SDVDIQSHIAPSEFLPKLVPFLKDA---TL--AVSCLVIL-KNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAV 609 (710)
Q Consensus 536 ~~~en~~~iv~aG~V~~Lv~lL~~~---~~--~~~al~iL-~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~ 609 (710)
.-..|. |.=+.++..- .+ +.+|-..| .-++..+..+.-+.++ .+.+-+.+-+...+|-|+
T Consensus 500 GR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 500 GRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred ccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHHHHHH
Confidence 544443 2222333211 11 12221111 1223333333333331 112224567999999999
Q ss_pred HHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHH----HHHHHHHHHhhhcc
Q 036199 610 AILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAK----VSALELRRLLRDVA 661 (710)
Q Consensus 610 ~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k----~kA~~LL~~l~~~~ 661 (710)
.+|..|+...+ .-...+++|+|+.-...++...+ -.+..++.-++...
T Consensus 566 ~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 566 YALHKLSLTEP----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred HHHHHHHHhhH----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 99999887664 34566788999887666665544 34455666666554
No 246
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=63.76 E-value=66 Score=39.05 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=103.5
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh----cCchHHHHHHHHHHHHhcCcchHH
Q 036199 506 SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL----KDATLAVSCLVILKNMCNTEHARV 581 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL----~~~~~~~~al~iL~nLa~~~e~r~ 581 (710)
.+.+..|..+....+.++.-....+|...+..+.-.....++-+.|..+.+. .|+-+...+-.++..|+...++..
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 5677788888877778888888889998888777777777888888887776 456677777777888877555555
Q ss_pred HHHhhcCChHHHHHHhhcCC----HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHH-hhcCCHHHHHHHHHHHHH
Q 036199 582 CVVETSGCLPSVAELLEIGS----EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI-SVYGNDKAKVSALELRRL 656 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s----~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L-~~~gt~~~k~kA~~LL~~ 656 (710)
-+.. -+||.|+.+|.... +.-..-|+.+|-.+-.+.+.-.....-.-++|++..+ +.+++...-..|...|+-
T Consensus 609 ~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 609 PMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA 686 (1005)
T ss_pred chHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence 5544 47999999998654 3444556666654554443222222223356777776 555666677888888884
Q ss_pred h
Q 036199 657 L 657 (710)
Q Consensus 657 l 657 (710)
+
T Consensus 687 ~ 687 (1005)
T KOG2274|consen 687 L 687 (1005)
T ss_pred H
Confidence 4
No 247
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=62.83 E-value=5.5 Score=31.15 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=31.9
Q ss_pred ccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 271 CPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 271 CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
|=.+...=...++++|||-.++.|..-| ...-||.|+.++...
T Consensus 10 ~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 10 CVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred EEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 4455555566889999999999984333 456799999988754
No 248
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=62.19 E-value=1e+02 Score=37.56 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=99.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..+.+..|..+.+|++.+....+... .....|+...+..++.....+.+..+...|+..|-.++..-+....-...
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 56677789999999999988876544 12233444444333333222245555666666666665433222222245
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cc-ccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DV-DIQSH 543 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~-en~~~ 543 (710)
+.++.|..-+..-.. .+.+..++-..+. .......++.+..++.++++..+..+...+-.... .. .+...
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 677777777754332 2333333322211 11123457788889999999998876666654443 22 22222
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHh
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMC 574 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa 574 (710)
-.-.+.+|.++....| .+++..|..++..+-
T Consensus 410 ~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2334566777777755 466766666666553
No 249
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=62.11 E-value=3.3 Score=48.42 Aligned_cols=65 Identities=22% Similarity=0.507 Sum_probs=49.1
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHhh--hCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE--EGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~--~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
-+..||||.+...+|+.+.|-|.||+.|+..-|. .+...||+|+.......+.--..-.++++++
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 3567999999999999999999999999988544 4567799998655544444444555666654
No 250
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.05 E-value=3e+02 Score=33.27 Aligned_cols=203 Identities=13% Similarity=0.140 Sum_probs=130.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.++....+++|.+.|..+...+.+. ..+.|..|+...+ .+.++++-.-.-|+..+.+..+-...
T Consensus 42 ~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVas----kn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 42 QLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVAS----KNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhc----cCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 5667777778899999887665554442 3467888888876 78899887777787777766554332
Q ss_pred cchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccccccc
Q 036199 468 DLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAP 546 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~ 546 (710)
.|..+-+-|++++. .--+++|+.|+. .|..+...=.+-++=+...+.++-+++.|+.||-.|=. .++.+.++
T Consensus 109 -SIntfQk~L~DpN~-LiRasALRvlSs---IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-- 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQ-LIRASALRVLSS---IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-- 181 (968)
T ss_pred -eHHHHHhhhcCCcH-HHHHHHHHHHHh---cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH--
Confidence 45666677877776 333445555542 23333322223334445567789999999999998865 44444433
Q ss_pred ccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 547 SEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 547 aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
+..+=.||.| +-+...|+.+....| ++.-.-|.. -...|-.+|..-+.+.|-..+..|..-|..
T Consensus 182 ---~e~I~~LLaD~splVvgsAv~AF~evC--PerldLIHk---nyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 182 ---EEVIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIHK---NYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred ---HHHHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhhH---HHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 3344455555 456777777776665 444444433 357777788778888888888888776643
No 251
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.83 E-value=50 Score=39.39 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=87.1
Q ss_pred cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHH-hccCcccccccccccchhchHHhhcC-chH--HHHHHHHH
Q 036199 495 SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHN-LSSDVDIQSHIAPSEFLPKLVPFLKD-ATL--AVSCLVIL 570 (710)
Q Consensus 495 ~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~n-Ls~~~en~~~iv~aG~V~~Lv~lL~~-~~~--~~~al~iL 570 (710)
....-+...++.|+...|+.|.....+.++-.+..||.. ++. +.+ .....++++...+.. ... .-.++.+|
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~----~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGE----RSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCC----chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 445556666789999999999998899999988888872 111 111 123566777776633 222 45679999
Q ss_pred HHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh
Q 036199 571 KNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 571 ~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
.||++ ++..|..|.. .-+++.+-.++...++-.|..|...+.||..++-
T Consensus 567 tnLas~s~s~r~~i~k-e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~ 616 (748)
T KOG4151|consen 567 TNLASISESDRQKILK-EKALGKIEELMTEENPALQRAALESIINLLWSPL 616 (748)
T ss_pred hcccCcchhhHHHHHH-HhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH
Confidence 99998 5677888887 5567776667777888899999999999987763
No 252
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=59.54 E-value=85 Score=32.64 Aligned_cols=135 Identities=22% Similarity=0.153 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHhccCcccccccccccc--hhchHHhh-c-----CchHHHHHHHHHHHHhcC--cchHHHHHhhc
Q 036199 518 SPNGKFQELAIKILHNLSSDVDIQSHIAPSEF--LPKLVPFL-K-----DATLAVSCLVILKNMCNT--EHARVCVVETS 587 (710)
Q Consensus 518 ~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~--V~~Lv~lL-~-----~~~~~~~al~iL~nLa~~--~e~r~~i~~~~ 587 (710)
+..+..+-.+++++.|+-.++..+..+.+... |-..+..+ . +..++-.+..++.|+|.. ......-.+ .
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~ 199 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-S 199 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-H
T ss_pred CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-H
Confidence 35678888999999999999888887776433 33333222 2 345677778888888761 111000000 1
Q ss_pred CChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHh-hcCCHHHHHHHHHH
Q 036199 588 GCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS-VYGNDKAKVSALEL 653 (710)
Q Consensus 588 g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~-~~gt~~~k~kA~~L 653 (710)
..+..+++.+.. .++++.-.++.+|.+|...+..........|+-..+.... ....+|.++-+..+
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 134555553332 6899999999999999988866666666667776665553 55578888877654
No 253
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.21 E-value=1.1e+02 Score=37.16 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHh-hc
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNM-LD 517 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~L-L~ 517 (710)
+-++-.|+..|..+..+...+..+...+++......|++.++- -+|...+..||.. .....+|-|.+- ..
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLS 813 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHh
Confidence 3456667777777766444444555677777777888777653 2555544444421 122335555552 21
Q ss_pred CC---CHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcch--HHHHHhhcCCh
Q 036199 518 SP---NGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHA--RVCVVETSGCL 590 (710)
Q Consensus 518 ~~---~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~--r~~i~~~~g~I 590 (710)
.. .++.+-....|+.++....+--..=..+-.+...+..+.++ ..+..++++|++||.--.+ -..+.+ ++
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e---v~ 890 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE---VL 890 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH---HH
Confidence 11 12222223344444442111000000011222223333444 3478889999999873222 223333 45
Q ss_pred HHHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchH---HHHHHh-hcCCHHHHHHHHHHHHHhh
Q 036199 591 PSVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIP---SLVKIS-VYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 591 ~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~---~Lv~L~-~~gt~~~k~kA~~LL~~l~ 658 (710)
..++.+..+ |++-.|..|+.++..+-.+-......+.++=.+. .+.... .+..+.+|-.|...+..+.
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 666666665 7888899999988777665543333333222222 222222 3345556666666655443
No 254
>PLN02189 cellulose synthase
Probab=58.93 E-value=6.9 Score=48.00 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=37.3
Q ss_pred ccccCCcc-----ccCCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLR-----LMYDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~-----~m~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
-.|+||++ .+-+|-+. .||.-.||.|.+.=.++|+..||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999987 35566654 578889999997777889999999998776
No 255
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.00 E-value=41 Score=31.93 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=59.5
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 036199 588 GCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 588 g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~~ 660 (710)
.++..|.+-|.++++.++-.|+.+|-.+..+.. .....+.....+..|+.+... ....+|+++..+++-....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 356778888889999999999999988887774 467788888999999999877 7788899888888765533
No 256
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=56.95 E-value=7.1 Score=34.42 Aligned_cols=27 Identities=19% Similarity=0.563 Sum_probs=23.4
Q ss_pred CCCCccchhhHHHHhhhCCCCCCCCCCc
Q 036199 285 ESGQTFERMWIQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 285 ~~G~ty~r~~I~~w~~~g~~~cP~t~~~ 312 (710)
.|.|.|--+||-+|+.. +..||.+++.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 68899999999999986 5689998764
No 257
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=56.62 E-value=3.3 Score=51.23 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=38.9
Q ss_pred CCCcccccCCccccC-CceecCCCCccchhhHHHHhhhCCCCCCCCC
Q 036199 265 IPEVFKCPLSLRLMY-DPVVIESGQTFERMWIQKWFEEGNHTCPKTK 310 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~-DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~ 310 (710)
.-..|.|+||+++|+ -=-+.-|||-||..|+.-|+.. +..||.|+
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 345569999999999 7778899999999999999985 56799996
No 258
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=56.59 E-value=43 Score=31.15 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=56.3
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchHHHHHHhhc---CCHHHHHHHHHHHHHhhhc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIPSLVKISVY---GNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~~Lv~L~~~---gt~~~k~kA~~LL~~l~~~ 660 (710)
++..|-+-|.++++.++-.|+.+|-.+..+... ....+.....+..|+.+..+ ....+|.++..+++-....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466788888899999999999999888877744 66777776667778888765 4678899988888766543
No 259
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.58 E-value=7.6 Score=41.87 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=34.6
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
..|-.-.|-||.+=.++-|-++|||+.| |+.-. +..+.||+|++..
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs--~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS--KHLPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHH--hhCCCCchhHHHH
Confidence 3455567999999999999999999988 54433 2356699998754
No 260
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=56.19 E-value=48 Score=27.70 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCC
Q 036199 563 AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEG 630 (710)
Q Consensus 563 ~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G 630 (710)
...|+.++.++++.+.|...+-+ .+.|+.++++... .....|--|..+|--+++.. +-+..+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 35689999999999999888876 6899999998885 56677888888887776655 4445554444
No 261
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.14 E-value=2.2e+02 Score=29.87 Aligned_cols=157 Identities=21% Similarity=0.200 Sum_probs=94.2
Q ss_pred ccchHHHHHHhccCcHHHHHHHHHHHhccCch--------hhHHHhhhCcHHHHHHhhcCCC----HHHHHHHHHHHHHh
Q 036199 467 EDLFSLLASFLHSAAATEETLAILVALSSYAY--------FISKIVASGALASILNMLDSPN----GKFQELAIKILHNL 534 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~--------nk~~I~~~GaI~~LV~LL~~~~----~~~~~~A~~aL~nL 534 (710)
.|.-+.+++=|.+..+.+.+..+|..|..... +|..+.-.+.+|.++.-+++++ ......++..|..+
T Consensus 63 ~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred hhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence 44455555556666666888888888775433 3333333456777777777776 24455677888888
Q ss_pred ccCcccccccccccchhchHHhh---cC------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHH
Q 036199 535 SSDVDIQSHIAPSEFLPKLVPFL---KD------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQ 605 (710)
Q Consensus 535 s~~~en~~~iv~aG~V~~Lv~lL---~~------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~k 605 (710)
|.. ...+.|..+| .. .+....++..|+.--. ++.- ...+.-|+++|.++.+..|
T Consensus 143 a~~----------~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~~------~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 143 AEA----------QGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDHE------FQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHh----------CCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chhH------HHHHHHHHHHHhCCcHHHH
Confidence 822 2223333333 11 2334444444433211 1111 2346678889999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 606 EHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 606 e~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
.....+|..+-..-+-.+. ....++.+|..++++.
T Consensus 206 ~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 206 RKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc
Confidence 9999999888766532222 4455788999888765
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=55.67 E-value=41 Score=31.81 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=58.2
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhh
Q 036199 588 GCLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 588 g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~~l~~ 659 (710)
.++..|.+-|.++++.++-.|+.+|-.+..+. ......+...+.+..|+.+.. ...+++|+++..+++--..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999988877775 457788888899999999876 4566889888888876554
No 263
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=55.55 E-value=46 Score=34.96 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=19.4
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
+...||.|+.. .+++.....++..|.+|+.
T Consensus 43 ~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 43 QKDLIPILISY--KDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred hhhHHHHHHhc--cCchHHHHHHHHHHHHhCC
Confidence 33444444433 3467888888888888874
No 264
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.03 E-value=1.2e+02 Score=36.80 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=93.2
Q ss_pred HHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh-cC----
Q 036199 485 ETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL-KD---- 559 (710)
Q Consensus 485 ~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL-~~---- 559 (710)
.|+..|..+....+-+..+...+++...+++|.+.++=+--+|+..+..||. +.....+|-|.+.= +.
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-------vy~e~il~dL~e~Y~s~k~k~ 818 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-------VYPEDILPDLSEEYLSEKKKL 818 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-------hcchhhHHHHHHHHHhcccCC
Confidence 5677777777666666667778899999999998888777788887777773 22334555555532 11
Q ss_pred -chHHHHHHHHHHHHhc--CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHH
Q 036199 560 -ATLAVSCLVILKNMCN--TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV 636 (710)
Q Consensus 560 -~~~~~~al~iL~nLa~--~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv 636 (710)
.+.+-+.-.++.+++. ++-..... +-.+...+..++..+.+-|..++++|.+||..........+-+ ++-.++
T Consensus 819 ~~d~~lkVGEai~k~~qa~Gel~~~y~---~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-v~~~Il 894 (982)
T KOG4653|consen 819 QTDYRLKVGEAILKVAQALGELVFKYK---AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-VLQLIL 894 (982)
T ss_pred CccceehHHHHHHHHHHHhccHHHHHH---HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HHHHHH
Confidence 1222222233333332 11111111 1123444555554555558889999998887653211111111 122233
Q ss_pred H-HhhcCCHHHHHHHHHHHHHhhh
Q 036199 637 K-ISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 637 ~-L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
. ...+|+.-.|+.|.-++..+-+
T Consensus 895 ~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 895 SLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHccCCchhhHHHHHHHHHHHHh
Confidence 3 3557788888888888886654
No 265
>PLN02195 cellulose synthase A
Probab=54.86 E-value=9.6 Score=46.54 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=37.4
Q ss_pred cccCCcc-----ccCCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 270 KCPLSLR-----LMYDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 270 ~CPI~~~-----~m~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
.|.||++ .+-+|-+. .||.-.||.|.+-=-++|+..||.|+..+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4888887 56677664 788889999997667789999999998887
No 266
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=54.80 E-value=1e+02 Score=31.59 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--C-----chHHHHHHHHHHHHhcCcch--HHHHHhhcCChH
Q 036199 521 GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--D-----ATLAVSCLVILKNMCNTEHA--RVCVVETSGCLP 591 (710)
Q Consensus 521 ~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~-----~~~~~~al~iL~nLa~~~e~--r~~i~~~~g~I~ 591 (710)
..-.-+|+..|.-++++++.|...+++.+--.|..+|. + +-++-.++++++.|..++.. ...+.. ...||
T Consensus 114 snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivP 192 (315)
T COG5209 114 SNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVP 192 (315)
T ss_pred hhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHH
Confidence 34456788888899999999999999988777888872 1 23567789999999986432 334444 68899
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcCChH---HHHHHHhCCchHH----H-HHHhhcCCHHHHHHHHHH
Q 036199 592 SVAELLEIGSEEDQEHAVAILLCLCSQRDQ---YCKLVMNEGVIPS----L-VKISVYGNDKAKVSALEL 653 (710)
Q Consensus 592 ~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~---~~~~v~~~G~v~~----L-v~L~~~gt~~~k~kA~~L 653 (710)
..+++++.||.-.|..|+-++..+-.++.. .|+...+.-++.. + .++...|+.|.-+.|...
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRc 262 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRC 262 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 999999999999999999998666555522 3555444444332 2 223344555544444433
No 267
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.09 E-value=85 Score=37.44 Aligned_cols=222 Identities=18% Similarity=0.257 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-------------cCCCHHHHHHHHHHHHHHh-ccCC
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-------------DLHDSRAQRIGCRLLLAFV-SKNR 459 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-------------~~~d~~~q~~A~~~L~nL~-~~~~ 459 (710)
+...|.-.++-|+.-+..++.-+ ..+|..+..+|.+.. -+.++.+.+.|+..+..+. ...+
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 45556666777777776555432 346788888887631 1456777777777777663 2222
Q ss_pred CCCccccccchHHHHHHhccCcH---HHHHHHHHHHhccCc-hhhHH-------HhhhCcHHHHHHhhc-------C---
Q 036199 460 SGIPYLNEDLFSLLASFLHSAAA---TEETLAILVALSSYA-YFISK-------IVASGALASILNMLD-------S--- 518 (710)
Q Consensus 460 ~k~~i~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~-~nk~~-------I~~~GaI~~LV~LL~-------~--- 518 (710)
|....+ .+..|+.+= ..+. ++.+.-+|..|+..+ +.|.+ ++.+.-+.-+|.+|+ +
T Consensus 294 nnvklI---vldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~ 369 (948)
T KOG1058|consen 294 NNVKLI---VLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEES 369 (948)
T ss_pred cchhhh---hHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccccc
Confidence 222111 122333322 1111 235556666665322 22222 223444566666662 1
Q ss_pred -CCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCchH--HHHHHHHHHHHhc-CcchHHHHHhhcCChHHH
Q 036199 519 -PNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDATL--AVSCLVILKNMCN-TEHARVCVVETSGCLPSV 593 (710)
Q Consensus 519 -~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~~~--~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~L 593 (710)
.+..-+..-+.+|+..+. .++ +.+.+|+.|+++|+|.+- ....+..++..-. .+.-|..|++ .|
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l 438 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE------KL 438 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH------HH
Confidence 112335666777777774 233 346778999999976432 2222222222211 3444444443 34
Q ss_pred HHHhhc-CCHHHHHHHHHHHHHHhcCChHHHH---HHH-hCCchHHH
Q 036199 594 AELLEI-GSEEDQEHAVAILLCLCSQRDQYCK---LVM-NEGVIPSL 635 (710)
Q Consensus 594 v~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~---~v~-~~G~v~~L 635 (710)
++-+.. .+.+.-+.|+|++..-|....+.+. .+. ..|-+|.+
T Consensus 439 ~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~ 485 (948)
T KOG1058|consen 439 LETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIV 485 (948)
T ss_pred HHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhcccccee
Confidence 443332 5777788899999888877753222 222 23556654
No 268
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=52.87 E-value=51 Score=31.10 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=56.6
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhc------CCHHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVY------GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~------gt~~~k~kA~~LL~~l~~ 659 (710)
++..|.+-|.++++.++-.|+.+|-.+..+. ......+...+.+.-|+.+... ....+|.+...+++--..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999988877766 4577888888888889998753 457888888887775553
No 269
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=52.57 E-value=12 Score=34.71 Aligned_cols=50 Identities=10% Similarity=0.252 Sum_probs=40.3
Q ss_pred CcccccCCccccCCceec----CCCCccchhhHHHHhh--hCCCCCCCCCCccCCC
Q 036199 267 EVFKCPLSLRLMYDPVVI----ESGQTFERMWIQKWFE--EGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~----~~G~ty~r~~I~~w~~--~g~~~cP~t~~~l~~~ 316 (710)
.-+.|-||.|.-.|+--+ .||...|-.|--.-|. .-++.||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 458899999999998877 6799999998877443 4688999998877653
No 270
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.35 E-value=39 Score=39.25 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=51.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcCch-----HHHHHHHHHHHHhcCcchH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKDAT-----LAVSCLVILKNMCNTEHAR 580 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~~~-----~~~~al~iL~nLa~~~e~r 580 (710)
.+|..+++|..+++..++..|+..|..+|.+ ++...++ ++.|+++|...+ ++..++..|..+ ++
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~--d~--- 128 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ--DP--- 128 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH---H---
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc--Cc---
Confidence 4588889999999999999999999999974 4555544 577888885432 233333222111 11
Q ss_pred HHHHhhcCChHHHHHHhh---cCCHHHHHHHHHHH
Q 036199 581 VCVVETSGCLPSVAELLE---IGSEEDQEHAVAIL 612 (710)
Q Consensus 581 ~~i~~~~g~I~~Lv~lL~---~~s~~~ke~A~~aL 612 (710)
.+.+..|...+. .++..++|.++..|
T Consensus 129 ------k~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 129 ------KGTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp ------HHHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 233444444444 56777788877666
No 271
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=51.24 E-value=76 Score=37.41 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=82.3
Q ss_pred cccchHHHHHHhccCcH-HHHHHHHHHHhccCc-hhhHHHhhhCcHHHHHHhhcC----CCHHHHHHHHHHHHHhc----
Q 036199 466 NEDLFSLLASFLHSAAA-TEETLAILVALSSYA-YFISKIVASGALASILNMLDS----PNGKFQELAIKILHNLS---- 535 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~-~~~Aa~~L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~----~~~~~~~~A~~aL~nLs---- 535 (710)
...++..+.+++.++.. ...|+..|..|...- ..- ...+..+..|+.. .++.....|+-++..|.
T Consensus 393 T~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 393 TNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 34567777777777543 346777776665322 111 1234555566643 24556666666666554
Q ss_pred cCc------ccccccccccchhchHHhhcC------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC---
Q 036199 536 SDV------DIQSHIAPSEFLPKLVPFLKD------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG--- 600 (710)
Q Consensus 536 ~~~------en~~~iv~aG~V~~Lv~lL~~------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~--- 600 (710)
... ..+...+...+++.|...+.. .+-.-.++.+|+|+-. ...++.|..++...
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhcccc
Confidence 231 223444556677777777741 1335556777777732 33566666666654
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHH
Q 036199 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDK 645 (710)
Q Consensus 601 s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~ 645 (710)
+...+-.|+.+|..+....++ -+.+.|+.+..+.+..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTED 573 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-
T ss_pred chHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCC
Confidence 677788888888877655543 1235566665554433
No 272
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=51.15 E-value=1.6e+02 Score=31.30 Aligned_cols=173 Identities=17% Similarity=0.220 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCch--hhH-------HHhhh
Q 036199 438 LHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAY--FIS-------KIVAS 506 (710)
Q Consensus 438 ~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~--nk~-------~I~~~ 506 (710)
+.++.+++.|+.+|.-.+--+. . .....++.+...+..+.. +..|+.+++.+..... .-. .....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~--~--~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDK--E--LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhCh--H--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 3789999999999988743221 1 234457778888866544 2578888886653221 111 12224
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCch-----HHHHHHHH-HHHHhc-Ccch
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT-----LAVSCLVI-LKNMCN-TEHA 579 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~-----~~~~al~i-L~nLa~-~~e~ 579 (710)
..+..+.+.|.+.+++++..|+..++.|-.+.-... ...++..|+-+--++. -...++.. +-..|. ++++
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 567788888888899999999999999875443322 1344444444443321 12333333 445565 4445
Q ss_pred HHHHHhhcCChHHHHHHhhcCC----HHH---HHHHHHHHHHHhcCC
Q 036199 580 RVCVVETSGCLPSVAELLEIGS----EED---QEHAVAILLCLCSQR 619 (710)
Q Consensus 580 r~~i~~~~g~I~~Lv~lL~~~s----~~~---ke~A~~aL~~Lc~~~ 619 (710)
+..+.+ +.++.+-.+..... +.. -.+.+..+..++...
T Consensus 191 Q~~l~~--~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~ 235 (298)
T PF12719_consen 191 QERLAE--AFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPS 235 (298)
T ss_pred HHHHHH--HHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChh
Confidence 544443 67788777776532 222 234555566666544
No 273
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=49.61 E-value=28 Score=33.51 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=83.6
Q ss_pred hHHHHHHhcc----CcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccccc
Q 036199 470 FSLLASFLHS----AAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHI 544 (710)
Q Consensus 470 I~~LV~lL~s----~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~i 544 (710)
+..++..|.. .+.+..|.-++..+- +..+....+ -.-..+-.++..++.+....+..+|..|-- .++-...+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455555543 223344444444431 333333321 122233334455445566667777776654 45555555
Q ss_pred c-cccchhchHHhhc--C--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC-CHH-HHHHHHHHHH
Q 036199 545 A-PSEFLPKLVPFLK--D--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG-SEE-DQEHAVAILL 613 (710)
Q Consensus 545 v-~aG~V~~Lv~lL~--~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~-~ke~A~~aL~ 613 (710)
. ..|.++.++.++. . ...+..++.+|..=|.....|..|.. .+++.|-++++.+ ++. .|..|+-+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 4 5788888998886 2 35677788888888888888888887 4789999999654 444 5666665554
No 274
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=48.93 E-value=36 Score=32.72 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhh--cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHh
Q 036199 563 AVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLE--IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS 639 (710)
Q Consensus 563 ~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~--~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~ 639 (710)
.-.++.+|..|=- .++--..+...+|.++.++.++. ..+...+..++.+|..-|... ..|..+.+.| ++.|-.+.
T Consensus 60 ~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~~-~~~L~~~~ 137 (157)
T PF11701_consen 60 LIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKNY-VSWLKELY 137 (157)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHHC-HHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHHH-HHHHHHHH
Confidence 4445555555543 56666677666899999999998 667777777877776655443 5666666666 58888888
Q ss_pred hcCC-HH-HHHHHH
Q 036199 640 VYGN-DK-AKVSAL 651 (710)
Q Consensus 640 ~~gt-~~-~k~kA~ 651 (710)
+++. +. .|..|.
T Consensus 138 ~~~~~~~~ir~~A~ 151 (157)
T PF11701_consen 138 KNSKDDSEIRVLAA 151 (157)
T ss_dssp TTCC-HH-CHHHHH
T ss_pred ccccchHHHHHHHH
Confidence 6555 44 454443
No 275
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=48.40 E-value=13 Score=29.01 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=24.0
Q ss_pred ccccCCcccc--CCceec--CCCCccchhhHH
Q 036199 269 FKCPLSLRLM--YDPVVI--ESGQTFERMWIQ 296 (710)
Q Consensus 269 f~CPI~~~~m--~DPV~~--~~G~ty~r~~I~ 296 (710)
-.||+|++.+ .|.+++ .||-.|=|.|.+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4699999999 788887 889999999943
No 276
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=48.26 E-value=5.1e+02 Score=30.33 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=64.5
Q ss_pred HHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH
Q 036199 404 DYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT 483 (710)
Q Consensus 404 ~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~ 483 (710)
.+-.+.+.+++.+ ..+..+|.++..+.-..++..++.++..++..+-.-. .-..++..|-.+|++....
T Consensus 250 ~~~~ll~~n~q~~---------~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~--~~~~~vs~L~~fL~s~rv~ 318 (898)
T COG5240 250 ATVELLKENSQAL---------LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQ--FVDQTVSSLRTFLKSTRVV 318 (898)
T ss_pred HHHHHHHhChHHH---------HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHhcchHH
Confidence 3445555555543 3455566555433446778888888887754331000 1123455555666666542
Q ss_pred --HHHHHHHHHhccCchhh---------HHHhhh---CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 484 --EETLAILVALSSYAYFI---------SKIVAS---GALASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 484 --~~Aa~~L~~Ls~~~~nk---------~~I~~~---GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
=.|..+|-.|+.....+ ..|... =..-++-.||+.|+.+....-...+-+.-.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvh 385 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVH 385 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHH
Confidence 37888888887432211 122221 123455667777776665555555555443
No 277
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=48.16 E-value=11 Score=42.09 Aligned_cols=93 Identities=11% Similarity=0.039 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHhcCc-----chHHHHHhhcCChHHHHH-HhhcCCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchH
Q 036199 561 TLAVSCLVILKNMCNTE-----HARVCVVETSGCLPSVAE-LLEIGSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIP 633 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~-----e~r~~i~~~~g~I~~Lv~-lL~~~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~ 633 (710)
.+...|+..|.|+...- -+-..+.+ |.+..+.. ..-.+..++|=||+.++-||-++..- .+..-...-+++
T Consensus 499 kV~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred hhhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence 46777888888876521 12222222 22333222 33346788899999999999988732 222233344678
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHH
Q 036199 634 SLVKISVYG-NDKAKVSALELRR 655 (710)
Q Consensus 634 ~Lv~L~~~g-t~~~k~kA~~LL~ 655 (710)
.|..|..++ +.++|-+|...|.
T Consensus 577 ~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 577 ALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHHHHHhccceEeehhhhhhc
Confidence 888876665 5677777777664
No 278
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=47.71 E-value=4.3 Score=33.45 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=22.3
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+..||.|.+. +.-..|+.+|-.|=..+.. ...||.|+++|.
T Consensus 1 e~~CP~C~~~----L~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQE----LEWQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SB----EEEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCc----cEEeCCEEECcccccccee--cccCCCcccHHH
Confidence 4579999884 4445578888888555433 356999998875
No 279
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=47.35 E-value=1.3e+02 Score=29.36 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHH
Q 036199 395 WDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLA 474 (710)
Q Consensus 395 ~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV 474 (710)
+.++.-++..+..++..-+..- ...++.+...|.+ .++.+++.|+.+|..|..++-.|. +...+..++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D----~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l 69 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRD----EDPLVRKTALLVLSHLILEDMIKV---KGQLFSRIL 69 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHH
Confidence 4567778888888875543211 2356677777766 789999999999999977654332 333447777
Q ss_pred HHhccCcHH--HHHHHHHHHhcc
Q 036199 475 SFLHSAAAT--EETLAILVALSS 495 (710)
Q Consensus 475 ~lL~s~~~~--~~Aa~~L~~Ls~ 495 (710)
.+|.+++.. ..|...+..+..
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH
Confidence 888777654 355555555553
No 280
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.24 E-value=97 Score=38.76 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=91.9
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccccccchHHHHHHhc-cCcH--HHHHHHHHHHhccCchh
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLNEDLFSLLASFLH-SAAA--TEETLAILVALSSYAYF 499 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~~gaI~~LV~lL~-s~~~--~~~Aa~~L~~Ls~~~~n 499 (710)
+.|.++...++....+|++.|..|..+|..+.. ... .-.-.+|.|+.++. +++. +-|++.++.-|+..-.|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 566666666654455789999999999998721 111 23456799999997 4544 24788888777632221
Q ss_pred -hHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhc
Q 036199 500 -ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN 575 (710)
Q Consensus 500 -k~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~ 575 (710)
-.. --+.|...|.+.++.+++.|..+|.+|-.++-.| =.|.++-+...|.|+ .+.+-|=.....|+.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 111 2356777888999999999999999998655332 258888888888775 345554434444443
No 281
>PLN02436 cellulose synthase A
Probab=46.63 E-value=14 Score=45.46 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=37.0
Q ss_pred ccccCCcc-----ccCCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLR-----LMYDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~-----~m~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
-.|.||++ ..-||-+. .||.-.||.|.+.=.++|+..||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999986 34566554 688889999997777889999999998776
No 282
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=46.45 E-value=4.4e+02 Score=31.31 Aligned_cols=190 Identities=14% Similarity=0.090 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc---cccchHHH
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL---NEDLFSLL 473 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~---~~gaI~~L 473 (710)
+...+++|..+.+..++......+ -+. .+..|-. ...+.+--|+.+|+-+..+. -+-..+. ....+..+
T Consensus 522 ~~~~~eeil~li~~s~~~~~e~~~--~l~-~l~~l~~----wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~l 594 (745)
T KOG0301|consen 522 EINGLEEILSLIKNSSHYSSEVLQ--SLL-ALAILLQ----WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTL 594 (745)
T ss_pred hhhhHHHHHHhhcCCCCccchhHH--HHH-HHHHHhc----CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhh
Confidence 345566666666655533221111 011 2222222 35667777888777764332 2212211 12244444
Q ss_pred HHHhccCcH-HHHHHHHHHHhccCchhhHHHhhh--CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc--Cccccccccccc
Q 036199 474 ASFLHSAAA-TEETLAILVALSSYAYFISKIVAS--GALASILNMLDSPNGKFQELAIKILHNLSS--DVDIQSHIAPSE 548 (710)
Q Consensus 474 V~lL~s~~~-~~~Aa~~L~~Ls~~~~nk~~I~~~--GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~--~~en~~~iv~aG 548 (710)
+..++-... .--++++|.|+-.+.-++..+... -.+.+++..=...+...+...++...|++. ..+|-. .|
T Consensus 595 i~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~ 670 (745)
T KOG0301|consen 595 IPILNADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LE 670 (745)
T ss_pred hcccccchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cc
Confidence 444441112 247888888988887777766642 222223322222234555555566667764 233322 56
Q ss_pred chhchHHhhcC-----c--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc
Q 036199 549 FLPKLVPFLKD-----A--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 549 ~V~~Lv~lL~~-----~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+.+.|..++.. + +..-.++.+|.+|+..+.+...+.. .-.|..++.-++.
T Consensus 671 ~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~-~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 671 GKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAK-NRSVDSIAKKLKE 727 (745)
T ss_pred hHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHH-hcCHHHHHHHHHH
Confidence 66666665521 2 2345678899999999888888887 5678999888875
No 283
>PRK14707 hypothetical protein; Provisional
Probab=46.09 E-value=6.9e+02 Score=34.08 Aligned_cols=244 Identities=13% Similarity=0.052 Sum_probs=130.1
Q ss_pred HHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHH-hccCCCCCccccccchHHHHHHhcc
Q 036199 401 VIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLHS 479 (710)
Q Consensus 401 Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~~LV~lL~s 479 (710)
++..|..+...++..+..+ ..-.|..+++-++.+ .|.-.-++|+..|-.. +++..-+. -++..++-..+.-|..
T Consensus 184 aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKW---p~~~~c~~aa~~la~~l~~~~~l~~-~~~~q~va~~lN~lsK 258 (2710)
T PRK14707 184 VAPRFAALVASDDRLRSAM-DAQGVATVLNALCKW---PDTPDCGNAVSALAERLADESRLRN-ELKPQELGNALNALSK 258 (2710)
T ss_pred HHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHcCcHHHHH-hCChHHHHHHHHHHhc
Confidence 4444433333333333333 455677777777665 4555556677766655 44433222 2355555555555542
Q ss_pred -CcHH--HHHHHHH-HHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHH-HHhccCcccccccccccchhchH
Q 036199 480 -AAAT--EETLAIL-VALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKIL-HNLSSDVDIQSHIAPSEFLPKLV 554 (710)
Q Consensus 480 -~~~~--~~Aa~~L-~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL-~nLs~~~en~~~iv~aG~V~~Lv 554 (710)
++.. .+|+..| ..|+.+..-+..+...++-..|=.+-+-.+..+...|+..| ..|..+++-+..+ ++-.+...+
T Consensus 259 wp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~L 337 (2710)
T PRK14707 259 WADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTAL 337 (2710)
T ss_pred CCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHH
Confidence 2221 3444444 35555444454444333333333333445554444444444 4566555544333 344444455
Q ss_pred Hhhc---C-chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhC
Q 036199 555 PFLK---D-ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNE 629 (710)
Q Consensus 555 ~lL~---~-~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~ 629 (710)
.-|+ + ....+.|..+...|+..++-+..+-. .++...+.-|.. .+...-..|+..|..=-.++.+.+..+-..
T Consensus 338 NalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~--q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q 415 (2710)
T PRK14707 338 NALSKWPDNPVCAAAVSALAERLVADPELRKDLEP--QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ 415 (2710)
T ss_pred HHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch--hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh
Confidence 5553 2 34455666666678888887777753 467777777775 344444555555554444566777777777
Q ss_pred CchHHHHHHhhcCCHHHHHHHHH
Q 036199 630 GVIPSLVKISVYGNDKAKVSALE 652 (710)
Q Consensus 630 G~v~~Lv~L~~~gt~~~k~kA~~ 652 (710)
|+--.|-.|++=....+-..|..
T Consensus 416 ~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 416 GVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred hHHHHHHHhhcCCcchhHHHHHH
Confidence 87777777766655555444444
No 284
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=17 Score=38.64 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=40.7
Q ss_pred ceecCCCCccchhhHHHHhhhCCCCCCCCCCcc--CC---CCCcccHHHHHHHHHH
Q 036199 281 PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL--VC---QSLTPNTAMKDLISKW 331 (710)
Q Consensus 281 PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l--~~---~~l~pN~~l~~~i~~w 331 (710)
|-++.||||+|-.|+.+-+..+.-.||.|+.+. .. ..+..|+++-..|+.-
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 444459999999999988887778899999873 32 3488899999999875
No 285
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=45.79 E-value=2.1e+02 Score=29.77 Aligned_cols=117 Identities=12% Similarity=0.140 Sum_probs=68.3
Q ss_pred hhhCcHHHHHHhhcCCCH--------HHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchH----HHHHHHHHH
Q 036199 504 VASGALASILNMLDSPNG--------KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL----AVSCLVILK 571 (710)
Q Consensus 504 ~~~GaI~~LV~LL~~~~~--------~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~----~~~al~iL~ 571 (710)
.+..+.|+|+++++.++. -+-++...+|+.++ .|-++.|-+++.++.+ +..|+.+|.
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 456788999999864432 12344445555555 5778888888877654 677888888
Q ss_pred HHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHH-HHHHHHHHHHHhcCC-hHHHHHHHhCCchHH
Q 036199 572 NMCN-TEHARVCVVETSGCLPSVAELLEIGSEED-QEHAVAILLCLCSQR-DQYCKLVMNEGVIPS 634 (710)
Q Consensus 572 nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~-ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~ 634 (710)
.++. ++..|..+++. +..++.-.-..++.. -..-++.+..|+... -.....+.+.|.|+.
T Consensus 139 ~l~~~~~~~Re~vi~~---f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 139 FLVHEGPISREEVIQY---FRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHHcCCCCHHHHHHH---HHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 8887 67778888773 555555422333333 222222223333222 123555666777664
No 286
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.51 E-value=55 Score=38.58 Aligned_cols=106 Identities=15% Similarity=0.087 Sum_probs=66.6
Q ss_pred hchHHhhcCchH--HHHHHHHHHHHhcCcchHHHHHhh-----cCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH--
Q 036199 551 PKLVPFLKDATL--AVSCLVILKNMCNTEHARVCVVET-----SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ-- 621 (710)
Q Consensus 551 ~~Lv~lL~~~~~--~~~al~iL~nLa~~~e~r~~i~~~-----~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~-- 621 (710)
..++.+|.+... +-..+.+++|+..+-.-...++++ +..+..|++-+...+|-.+..|+.++-.+|..+..
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 445667766543 344456677776532111122221 12345555556678999999999999999987732
Q ss_pred -HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-Hhhhcc
Q 036199 622 -YCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRDVA 661 (710)
Q Consensus 622 -~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~~~ 661 (710)
.+.. ++...+.-+++.+..+|++|.+|+. +|-+|.
T Consensus 382 ~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 GRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred chHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 2333 3345566678889999999999887 554444
No 287
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=45.35 E-value=1.3e+02 Score=36.83 Aligned_cols=182 Identities=14% Similarity=0.123 Sum_probs=105.7
Q ss_pred chHHHHHHhccCcHHHHHHHHHHHhccCc----------hhhHHHhh---hCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 469 LFSLLASFLHSAAATEETLAILVALSSYA----------YFISKIVA---SGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 469 aI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~----------~nk~~I~~---~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
.-..++.+|++++....|+.++.-+..+. ++|...-+ ...+|.|++.....+...+..-..+|.+.-
T Consensus 816 ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl 895 (1030)
T KOG1967|consen 816 IAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVL 895 (1030)
T ss_pred HHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHH
Confidence 34566777777655344555444333221 12111111 467899999988677777788888888776
Q ss_pred cCcccccccc-c-ccchhchHHhhcCc--hHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCC---HHHHHH
Q 036199 536 SDVDIQSHIA-P-SEFLPKLVPFLKDA--TLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGS---EEDQEH 607 (710)
Q Consensus 536 ~~~en~~~iv-~-aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s---~~~ke~ 607 (710)
.+-.- ..+. + ....|.|++.|+-+ .++-.++.++.-+-.- +.-...-+. -.||.+..+=...+ ..+++.
T Consensus 896 ~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~--Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 896 TNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS--TLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred hcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh--HHHHHHHhcCCCCCcchhHHHHH
Confidence 53222 2222 1 34566677776544 4445556666655442 211112222 25666666555433 678999
Q ss_pred HHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 036199 608 AVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALEL 653 (710)
Q Consensus 608 A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~L 653 (710)
|+.+|..|...-|...-.-.+--++..|...+.+.-..+|+.|...
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999998544443444455566777777777766677777653
No 288
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=44.66 E-value=13 Score=35.38 Aligned_cols=38 Identities=21% Similarity=0.511 Sum_probs=23.1
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhh-hCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE-EGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~-~g~~~cP~t~~~l~~ 315 (710)
...|.||-| |++|.-.-.....+ .|..+||.||.+|.+
T Consensus 97 ~~~Y~Cp~C------------~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNC------------QSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCC------------CCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 557999954 44554222222221 356889999998854
No 289
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=44.53 E-value=6e+02 Score=30.33 Aligned_cols=252 Identities=14% Similarity=0.115 Sum_probs=131.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
||..|.-.+.+.+.+--..|.... +.--+.+...-.++.|+..+.. ++ +-...+..|+.+...-.... .
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~----g~--a~~~~ltpl~k~~k~ld~~e--y 327 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEF----GD--AASDFLTPLFKLGKDLDEEE--Y 327 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhc----cc--cchhhhhHHHHhhhhccccc--c
Confidence 344444444555544433333322 1112233444556666666654 22 22334444554422111111 5
Q ss_pred cccchHHHHHHhccCcHHHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccccc
Q 036199 466 NEDLFSLLASFLHSAAATEETLAILVALSS-YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSH 543 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~~ 543 (710)
..+.+|.|++++++.+.... ...|.++-. .+..-..+.+...+|.+..-+.+.++-.++.++..+.-|+.- ..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR-~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--- 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIR-LLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--- 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHH-HHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---
Confidence 67899999999998865211 111122211 122233556677899999999999999999998888776631 111
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
......+..|.++-.| +.+.....-+|..++.+. .+.++..-.+.++.+-++..-+..+..++.+|+..+..-+
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~- 479 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD- 479 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeeccccccc---chhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-
Confidence 1111222222222221 233333333344443321 1222312223444555666656678888888888776553
Q ss_pred HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 622 YCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+.=+..-++|.+.-+..+...-++..|-..++-+-
T Consensus 480 --~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 480 --QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred --hhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 22233456777777777777778888877776443
No 290
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=43.86 E-value=16 Score=45.07 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=36.4
Q ss_pred cccCCccc-----cCCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 270 KCPLSLRL-----MYDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 270 ~CPI~~~~-----m~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
.|.||++= .-||-+. .||.-.||.|.+-=.++|+..||.|+..+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 69999763 5566654 788889999997667789999999998765
No 291
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.68 E-value=1.9e+02 Score=33.81 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=82.2
Q ss_pred cccchHHHHHHhccCcHH-HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCC----CHHHHHHHHHHHHHhc----
Q 036199 466 NEDLFSLLASFLHSAAAT-EETLAILVALSSY-AYFISKIVASGALASILNMLDSP----NGKFQELAIKILHNLS---- 535 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~-~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~----~~~~~~~A~~aL~nLs---- 535 (710)
...++..+.+.+.++... ..|+.++..+... ...- ...+..+.+++.++ .+.....|.-++.+|.
T Consensus 355 T~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 456788888888776532 3455555443311 1111 22356666777543 3445555555555554
Q ss_pred cCcccccccccccchhchHHhhcC------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh---cCCHHHHH
Q 036199 536 SDVDIQSHIAPSEFLPKLVPFLKD------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE---IGSEEDQE 606 (710)
Q Consensus 536 ~~~en~~~iv~aG~V~~Lv~lL~~------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~---~~s~~~ke 606 (710)
.+.+.+...+....++.|...|.+ .+-.-.++.+|+|+.. ...+..|..++. ..++..+-
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~ 498 (574)
T smart00638 430 VNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRL 498 (574)
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHH
Confidence 344333223334466666666622 1123334556665532 233455555554 23677899
Q ss_pred HHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCH
Q 036199 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGND 644 (710)
Q Consensus 607 ~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~ 644 (710)
.|+.+|..++...+. -+.+.|+.+..+.+.
T Consensus 499 ~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e 528 (574)
T smart00638 499 AAILALRNLAKRDPR--------KVQEVLLPIYLNRAE 528 (574)
T ss_pred HHHHHHHHHHHhCch--------HHHHHHHHHHcCCCC
Confidence 999999988754433 223556666555433
No 292
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=43.65 E-value=12 Score=39.21 Aligned_cols=26 Identities=15% Similarity=0.483 Sum_probs=18.5
Q ss_pred cccccCCccccC--C-ceecCCCCccchh
Q 036199 268 VFKCPLSLRLMY--D-PVVIESGQTFERM 293 (710)
Q Consensus 268 ~f~CPI~~~~m~--D-PV~~~~G~ty~r~ 293 (710)
.|.||+|+.-|. + ...-+.||+||..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999999885 2 2334567888765
No 293
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.20 E-value=56 Score=30.63 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=56.0
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhcC-CHH---HHHHHHHHHHHhhhc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVYG-NDK---AKVSALELRRLLRDV 660 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~g-t~~---~k~kA~~LL~~l~~~ 660 (710)
++..|.+-|.++++.++-.|+.+|-.+..+. +.....+.....+..|..+..+. +.. +|+++..+|+-....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999998888877 45677777778889998876654 333 788888888755543
No 294
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=42.79 E-value=1.1e+02 Score=28.44 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=56.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcc-cchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQ-VSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS 456 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~-~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~ 456 (710)
.+|..+++.+|..|+..|-.+.+.... .+..++...++..|++++... ...+..++..++.++.+...
T Consensus 44 krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 44 KKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 788889999999999999999987655 566777778999999999763 23688999999999998854
No 295
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=42.53 E-value=2.2e+02 Score=34.43 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=64.3
Q ss_pred HHHHhcc-CcccccccccccchhchHHhhc---CchHHHHHHHHHHHHhcCcchHHHHHhhcCChH--HHHHHhhcCCH-
Q 036199 530 ILHNLSS-DVDIQSHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLP--SVAELLEIGSE- 602 (710)
Q Consensus 530 aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~--~Lv~lL~~~s~- 602 (710)
+|++... +++++..+++.|++..+...+. ..++...++++|.|++...+.+....- -..+. .+-.++..-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcchh
Confidence 8889885 6899999999999999999995 567899999999999987655443322 11122 33334444444
Q ss_pred HHHHHHHHHHHHHhcCC
Q 036199 603 EDQEHAVAILLCLCSQR 619 (710)
Q Consensus 603 ~~ke~A~~aL~~Lc~~~ 619 (710)
+.-.+|+++|..+-.++
T Consensus 573 ersY~~~siLa~ll~~~ 589 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDS 589 (699)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 66778888888887764
No 296
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=42.31 E-value=7.4e+02 Score=30.49 Aligned_cols=169 Identities=13% Similarity=0.177 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCccc-cccchHHHHHHhcc-CcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHH
Q 036199 439 HDSRAQRIGCRLLLAFVSKNRSGIPYL-NEDLFSLLASFLHS-AAAT--EETLAILVALSSYAYFISKIVASGALASILN 514 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~~~k~~i~-~~gaI~~LV~lL~s-~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~ 514 (710)
.+-..+..|+..+.....+.. +.... ..|.+-.+...... .+.. ..|+.+|-.++..-..-..=...+..|.|++
T Consensus 265 ~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLD 343 (815)
T ss_pred cchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHH
Confidence 567777788887777765554 22211 23334444443332 2222 4667777666632111111113567888888
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-c---chHHHHHhhcC
Q 036199 515 MLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-E---HARVCVVETSG 588 (710)
Q Consensus 515 LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~---e~r~~i~~~~g 588 (710)
-+.+.....+..+..++-..+. ...-...++..+.++.+ +.+...+...+...-.. + ..+..+ .+
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~---~~ 414 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV---KT 414 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH---HH
Confidence 8877766666655555544432 11112344555566644 45666655555544432 2 122333 24
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
.++.++......+..++..|..++..+-.
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 67888888878899999999888876543
No 297
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=42.20 E-value=18 Score=39.52 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=26.9
Q ss_pred ceecCCCCccch-----hhHHHHhhh------------CCCCCCCCCCccCCC
Q 036199 281 PVVIESGQTFER-----MWIQKWFEE------------GNHTCPKTKMKLVCQ 316 (710)
Q Consensus 281 PV~~~~G~ty~r-----~~I~~w~~~------------g~~~cP~t~~~l~~~ 316 (710)
|..-+|++.||| +|+-+||.+ |..+||.|+.+++-.
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 445678888875 799999853 456799999987643
No 298
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=42.02 E-value=3.1e+02 Score=34.80 Aligned_cols=214 Identities=16% Similarity=0.127 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHHHHcc-CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc----CCCCCcccccc
Q 036199 394 NWDCQCKVIEDYETRLEH-DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK----NRSGIPYLNED 468 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~-~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~----~~~k~~i~~~g 468 (710)
..+.+.+|++-|+.++.. +++++ -..++|-+|.++.. .+.++|..|+..|..+... ...-..+.-+=
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~D----s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY 507 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMD----SEADVRATALETLTELLALVRDIPPSDANIFPEY 507 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcC----chHHHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence 345677888888888764 22222 23578999999977 6789999999888877432 22223344556
Q ss_pred chHHHHHHhccCcHH-----------HHHHHHHHHh--c--------cCchhh-HHHh-----hhC----cHH-HHHHhh
Q 036199 469 LFSLLASFLHSAAAT-----------EETLAILVAL--S--------SYAYFI-SKIV-----ASG----ALA-SILNML 516 (710)
Q Consensus 469 aI~~LV~lL~s~~~~-----------~~Aa~~L~~L--s--------~~~~nk-~~I~-----~~G----aI~-~LV~LL 516 (710)
.+|.|-.++.+.+.. .-|-.+...| + .++.|- ...- +.+ .|. ..+.+|
T Consensus 508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLl 587 (1431)
T KOG1240|consen 508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLL 587 (1431)
T ss_pred hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 788888888763321 1122222211 1 011111 0000 011 122 333455
Q ss_pred cCCCHHHHHHHHHHHHHhcc------Ccc-------------c---c---------------cccccccchhchHHhhcC
Q 036199 517 DSPNGKFQELAIKILHNLSS------DVD-------------I---Q---------------SHIAPSEFLPKLVPFLKD 559 (710)
Q Consensus 517 ~~~~~~~~~~A~~aL~nLs~------~~e-------------n---~---------------~~iv~aG~V~~Lv~lL~~ 559 (710)
...++-++..-+..|.-||. +.+ . + .+-++.+.+|.|.+-|.|
T Consensus 588 sd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 588 SDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD 667 (1431)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC
Confidence 55555666666666666652 011 0 0 011345567777777766
Q ss_pred c--hHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 560 A--TLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 560 ~--~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
+ -+...|++.|..|+...--+ .++.+ .+....-+|-+.+..++..++.++......
T Consensus 668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~~---i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIKLGLLRKPAVKD---ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchhhHHHHHHHHHHHHHhcccchHHHHH---HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 4 46889999999999855443 33333 344555567789999999999999887643
No 299
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.98 E-value=8.3e+02 Score=30.93 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=62.6
Q ss_pred cccccccccchhchHHhh--cCchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhh---cCCHHHHHHHHHHHH
Q 036199 540 IQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLE---IGSEEDQEHAVAILL 613 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~---~~s~~~ke~A~~aL~ 613 (710)
.+.++..+|++..|+..+ ..+.++-+-+..|..+++ ++.|...... .||+..|++++. +|+....-+|..+.-
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS-~gcvellleIiypflsgsspfLshalkIve 978 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTS-AGCVELLLEIIYPFLSGSSPFLSHALKIVE 978 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhc-ccHHHHHHHHhhhhhcCCchHhhccHHHHH
Confidence 356788999999999876 557888888999999998 6666665555 899999999886 466677778888877
Q ss_pred HHhcCC
Q 036199 614 CLCSQR 619 (710)
Q Consensus 614 ~Lc~~~ 619 (710)
-||...
T Consensus 979 mLgayr 984 (2799)
T KOG1788|consen 979 MLGAYR 984 (2799)
T ss_pred HHhhcc
Confidence 777654
No 300
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.94 E-value=1.1e+02 Score=35.00 Aligned_cols=112 Identities=15% Similarity=0.261 Sum_probs=73.6
Q ss_pred ccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHH---HhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHh---cCC
Q 036199 547 SEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCV---VETSGCLPSVAELLEI-GSEEDQEHAVAILLCLC---SQR 619 (710)
Q Consensus 547 aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i---~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc---~~~ 619 (710)
.+.|+.+++.+..+.+.+--+.++. +..++++..+ ....+.|+.|+.+|.. .++..+.+|+.+|..+- .+.
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~ 97 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNA 97 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 5678888888877777777666665 3334444443 3347899999999974 68889999998876663 321
Q ss_pred ----------hHHHHHHHhCCchHHHHHHhh--cCCHHHHHHHHHHHHHhhhc
Q 036199 620 ----------DQYCKLVMNEGVIPSLVKISV--YGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 620 ----------~~~~~~v~~~G~v~~Lv~L~~--~gt~~~k~kA~~LL~~l~~~ 660 (710)
..-...+...-.|..|+...- .++.-.---..-++.++|+.
T Consensus 98 ~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 98 PQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 123445566667788877655 34333334444578888766
No 301
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=41.90 E-value=26 Score=31.56 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHH
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQ 524 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~ 524 (710)
......|..|+..++.-..+++.|+++.|+.||...+.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 46788888999988888888999999999999988876543
No 302
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=41.75 E-value=79 Score=29.87 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=56.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK 457 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~ 457 (710)
.+|.++++.+|..|+.-|-.+.+.. ......+++.+++..|++++.. ..++.++..++.++...+..
T Consensus 48 krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 48 KRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999998874 4456778899999999999975 36789999999999988643
No 303
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=40.87 E-value=6.6e+02 Score=29.48 Aligned_cols=215 Identities=14% Similarity=0.091 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHHHHHHhccC-CCCCccccccchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcH-HHHH
Q 036199 439 HDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGAL-ASIL 513 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI-~~LV 513 (710)
..++.-..|+.++..++.-+ .+ ..=.|.+..+|.....+.. ..+++.++.+.+....-...+..+++| -.+|
T Consensus 106 ~epr~~~~Aaql~aaIA~~Elp~---~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv 182 (858)
T COG5215 106 PEPRFCTMAAQLLAAIARMELPN---SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIV 182 (858)
T ss_pred CccHHHHHHHHHHHHHHHhhCcc---ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHH
Confidence 56777777888887775422 10 0124555555555554433 258899999988766655555555443 3333
Q ss_pred -HhhcCC-CHHHHHHHHHHHHH-hccCcccccccccccchhchHHhh------cCchHHHHHHHHHHHHhc-CcchHHHH
Q 036199 514 -NMLDSP-NGKFQELAIKILHN-LSSDVDIQSHIAPSEFLPKLVPFL------KDATLAVSCLVILKNMCN-TEHARVCV 583 (710)
Q Consensus 514 -~LL~~~-~~~~~~~A~~aL~n-Ls~~~en~~~iv~aG~V~~Lv~lL------~~~~~~~~al~iL~nLa~-~~e~r~~i 583 (710)
.-++++ +..++-.|+.+|++ |-.-.+| +-..|-...+++.. .+.+++..|.+.|..+-. .-.--..+
T Consensus 183 ~ga~k~et~~avRLaaL~aL~dsl~fv~~n---f~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y 259 (858)
T COG5215 183 MGALKNETTSAVRLAALKALMDSLMFVQGN---FCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY 259 (858)
T ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHHh---hcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 46778888999998 4332222 22223333333333 234678888888877755 22222233
Q ss_pred HhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHh----------------CCchHHHHHHhhcCC----
Q 036199 584 VETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN----------------EGVIPSLVKISVYGN---- 643 (710)
Q Consensus 584 ~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~----------------~G~v~~Lv~L~~~gt---- 643 (710)
.+ ..........+++.+.++.-.|+..-..+|....+.--.... ..++|-|+.|+..-+
T Consensus 260 mE-~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~ 338 (858)
T COG5215 260 ME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYY 338 (858)
T ss_pred HH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33 233344455677889999888888866778655332122221 236777877765511
Q ss_pred ---HHHHHHHHHHHHHhhhc
Q 036199 644 ---DKAKVSALELRRLLRDV 660 (710)
Q Consensus 644 ---~~~k~kA~~LL~~l~~~ 660 (710)
-..-..|...|+++...
T Consensus 339 ~DdWn~smaA~sCLqlfaq~ 358 (858)
T COG5215 339 GDDWNPSMAASSCLQLFAQL 358 (858)
T ss_pred ccccchhhhHHHHHHHHHHH
Confidence 12345566677776544
No 304
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=40.53 E-value=1.7e+02 Score=34.85 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=103.5
Q ss_pred cccchHHHHHHhccCcHHHHHHHHHHHh------ccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc
Q 036199 466 NEDLFSLLASFLHSAAATEETLAILVAL------SSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~~~Aa~~L~~L------s~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e 539 (710)
..-.+|.|..+++.....+.-+-++.++ ...++.+ ..++|.|..-+++.+..+++.++..+-..+..-+
T Consensus 347 ~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~-----~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVK-----EKILPLLYRSLEDSDVQIQELALQILPTVAESID 421 (700)
T ss_pred hhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHH-----HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc
Confidence 3445677777766433323333333333 2233333 3457888888889999999999999988885444
Q ss_pred cccccccccchhchHHhh---cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 540 IQSHIAPSEFLPKLVPFL---KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
...++.-++|.|-.+- .+..++..++.+++.+.. .-.+.++++ -+.++.+-.+..+|...-..+.+-.++.
T Consensus 422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~~~v~d---~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDKAAVLD---ELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHHHHhHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4455555666666653 223557777888887772 222334443 2455555555678888776666666655
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcCCH
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYGND 644 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~gt~ 644 (710)
.... ..+.++.+-++|.++-++..+.-
T Consensus 496 ~~~~-~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 496 LIIY-SGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred hhcc-cceeeehhhhhhhhhhhhhcccc
Confidence 5442 22677777889999998877763
No 305
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.77 E-value=21 Score=44.05 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=36.8
Q ss_pred ccccCCccc-----cCCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRL-----MYDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~-----m~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
-.|.||++= .-||-+. .||.-.||.|.+-=.++|+..||.|++++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 358888763 5567654 788889999997667889999999998876
No 306
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=39.53 E-value=6.6 Score=39.76 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=34.1
Q ss_pred CcccccCCcc-ccCCc--eec---CCCCccchhhHHHHhhhCCCCCC--CCCCcc
Q 036199 267 EVFKCPLSLR-LMYDP--VVI---ESGQTFERMWIQKWFEEGNHTCP--KTKMKL 313 (710)
Q Consensus 267 ~~f~CPI~~~-~m~DP--V~~---~~G~ty~r~~I~~w~~~g~~~cP--~t~~~l 313 (710)
.+-.||||.- ..-.| +++ .|=|..|-+|..+-|..|...|| -|++.|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4567999962 33334 222 48899999999999999999999 555443
No 307
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=38.77 E-value=14 Score=32.58 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCCCCcccccCCccccCCceec--CCCCccchhhHHH
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVI--ESGQTFERMWIQK 297 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~--~~G~ty~r~~I~~ 297 (710)
..+.++-.|++|++-+.+++.. ++||.|-..|+.+
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 3456677799999999988764 9999998888653
No 308
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.50 E-value=1.7e+02 Score=36.74 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=95.4
Q ss_pred cHHHHHHhhc----CCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhc---CchHHHHHHHHHHHHhcCcch
Q 036199 508 ALASILNMLD----SPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHA 579 (710)
Q Consensus 508 aI~~LV~LL~----~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~~e~ 579 (710)
..|.++++.+ .++|+.+..|.-||+.+.. +.+-+ .-..|.|...|. ++.++-.++..|+-|+-.-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4666777774 3468999999999988863 22222 234567777774 345566677777777653322
Q ss_pred HHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 580 RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 580 r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
+++ ---+.|...|...++.+|+.|+-+|..|-.++ ++.--|.++-...++.+++.+.+..|....+-|..
T Consensus 995 ---lie--~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 ---LIE--PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ---ccc--hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 222 12356777788889999999999998886664 55566888888889999999999999966655544
Q ss_pred c
Q 036199 660 V 660 (710)
Q Consensus 660 ~ 660 (710)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 3
No 309
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=38.47 E-value=98 Score=28.80 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=54.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK 457 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~ 457 (710)
.+|.++++.+|..|+.-|-.+.+.. ......++..+++..|+.++... ...+.++..++.++......
T Consensus 44 krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~--~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 44 KRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK--YPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999998874 45567788899999999999763 12334888888888887543
No 310
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=38.46 E-value=3.6e+02 Score=32.67 Aligned_cols=122 Identities=12% Similarity=0.090 Sum_probs=82.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHH
Q 036199 508 ALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVV 584 (710)
Q Consensus 508 aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~ 584 (710)
.-..+...+.++++...+..+.++.++..-..-...- ...-.++-..-..+ +.+.+....+|..++. .++.-..+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3456677778888999999999999988532211111 11111111111111 3457788899999998 677777777
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh--HHHHHHHhCC
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD--QYCKLVMNEG 630 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~--~~~~~v~~~G 630 (710)
...++...++..+-+++.+..+.|..+|........ +.-+.+.+..
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~ 568 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSN 568 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 768899999999999999999999999999886542 3344444443
No 311
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=37.89 E-value=18 Score=36.14 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=39.4
Q ss_pred CCCc-ccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEV-FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~-f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.|+. ..|.+|..+.-.-+-- .||..|-+.||+.++.+ .+.||.|+.-.+|
T Consensus 177 y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 177 YADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred hHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 3433 6899999988765543 77888999999999987 7889999865554
No 312
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=37.23 E-value=27 Score=43.46 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=27.9
Q ss_pred CCCCcccccCCc--cccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 264 IIPEVFKCPLSL--RLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 264 ~~p~~f~CPI~~--~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
++|.+++||=|. +...|+ .+-+|.- --..+||+|+.+|..
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsGfD-----------LpdK~CPkCg~pl~k 951 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSGFD-----------LPDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCCCC-----------CCCCCCCcCCCcccc
Confidence 567899999996 455665 3334432 246789999999854
No 313
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=37.15 E-value=1e+02 Score=28.74 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=54.6
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhcCC--HHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVYGN--DKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~gt--~~~k~kA~~LL~~l~~ 659 (710)
++..|-+-|.++++.++-.|+.+|-.+..+. ......+...+.+..|+.+..... +.+++++..++.-...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999998877775 457788888889999988866543 2378877777765443
No 314
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=36.98 E-value=3.1e+02 Score=30.68 Aligned_cols=251 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhcc---ccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDA---RDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~---~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
...+.++..++++.|.++.-.+...|....+......+.+++... ....+.+.-..-+..|+....-+..-..+.+.
T Consensus 107 ~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l 186 (532)
T KOG4464|consen 107 TVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAEL 186 (532)
T ss_pred cccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHh
Q ss_pred cchHHHHHHhc---------cCcH---HH-----HHHHHHHHhccCchhhHHHhhhCcHHHHHHhh---------cCCCH
Q 036199 468 DLFSLLASFLH---------SAAA---TE-----ETLAILVALSSYAYFISKIVASGALASILNML---------DSPNG 521 (710)
Q Consensus 468 gaI~~LV~lL~---------s~~~---~~-----~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL---------~~~~~ 521 (710)
+|++.+.++|. ++.. ++ +|+.+++|+..+..--..+-.+..-..+-.++ +..+.
T Consensus 187 ~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~ 266 (532)
T KOG4464|consen 187 LGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTE 266 (532)
T ss_pred cccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHH
Q ss_pred HHHHHHHHHHHHh----------ccCcccccc------cccccchhchHHhh--------cCchHHHHHHHHHHHHhcCc
Q 036199 522 KFQELAIKILHNL----------SSDVDIQSH------IAPSEFLPKLVPFL--------KDATLAVSCLVILKNMCNTE 577 (710)
Q Consensus 522 ~~~~~A~~aL~nL----------s~~~en~~~------iv~aG~V~~Lv~lL--------~~~~~~~~al~iL~nLa~~~ 577 (710)
+.-.++..-|-|. ...++++.+ .....+|-.|+..+ +..++....+.+|..+|+..
T Consensus 267 elhshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~ 346 (532)
T KOG4464|consen 267 ELHSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSH 346 (532)
T ss_pred HHhhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhh
Q ss_pred chHHHHHhhcCChH-----------------HHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh
Q 036199 578 HARVCVVETSGCLP-----------------SVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 578 e~r~~i~~~~g~I~-----------------~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~ 640 (710)
..-..... ...+| .|+++|-..+...|..|+..|.-||..+ ++.++.-..
T Consensus 347 R~~Rkylr-~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes------------V~rmIKYtG 413 (532)
T KOG4464|consen 347 RVMRKYLR-QQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKES------------VNRMIKYTG 413 (532)
T ss_pred HHHHHHHH-HhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcc------------hhhhhhhcc
Q ss_pred cCCHHHHHHHHHHH
Q 036199 641 YGNDKAKVSALELR 654 (710)
Q Consensus 641 ~gt~~~k~kA~~LL 654 (710)
-|+..+--.|..||
T Consensus 414 yGnaAGllA~rGll 427 (532)
T KOG4464|consen 414 YGNAAGLLAARGLL 427 (532)
T ss_pred cccHHHHHHhhhhh
No 315
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=36.98 E-value=4.3e+02 Score=32.22 Aligned_cols=234 Identities=14% Similarity=0.136 Sum_probs=128.4
Q ss_pred hcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhcc
Q 036199 418 SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSS 495 (710)
Q Consensus 418 ~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~ 495 (710)
.....+.++.++.++.. ....+++.|...+.++...-.... -......+.++.....++.. ...+.....|+.
T Consensus 271 ~~~~s~v~~~~~~L~~D----dqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 271 EIVKSEVLPTLIQLLRD----DQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred HHHHhhccHHHhhhhhc----chhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHH
Confidence 44567788888888876 335677777777777643111110 12345677788877777643 233333334432
Q ss_pred CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CcccccccccccchhchHHhhcCchH--HHHHHHHHH
Q 036199 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS--DVDIQSHIAPSEFLPKLVPFLKDATL--AVSCLVILK 571 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~--~~en~~~iv~aG~V~~Lv~lL~~~~~--~~~al~iL~ 571 (710)
.-.- ..+..-.+++...+++....+....++.-...++. +.+....+....++|.+-.++.+... ....+....
T Consensus 346 ~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 346 AVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred Hhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 1111 22333457777788766555555555555555543 34455566666667777777655433 222222222
Q ss_pred HHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHH
Q 036199 572 NMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651 (710)
Q Consensus 572 nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~ 651 (710)
+++-. -++..-+ .-..|.+...++...+.++.+-...|..+=............+-.+|.+.++......|++....
T Consensus 424 ~~~p~-~~k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 424 GLSPI-LPKERTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred ccCcc-CCcCcCc--cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 22211 1111111 23456666667777788888877655443222223334455556677888887777777776666
Q ss_pred HHHHHhhhcc
Q 036199 652 ELRRLLRDVA 661 (710)
Q Consensus 652 ~LL~~l~~~~ 661 (710)
+-+-.+..+.
T Consensus 501 ~~ip~la~q~ 510 (759)
T KOG0211|consen 501 EYIPQLALQL 510 (759)
T ss_pred HHHHHHHHhh
Confidence 6666555543
No 316
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=36.97 E-value=24 Score=31.65 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=30.9
Q ss_pred CCcccccCCccccCCceec--CCC----CccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 266 PEVFKCPLSLRLMYDPVVI--ESG----QTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~--~~G----~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
.+.+.||||+++=..=|-+ +.| .-||..++.+-...|. .=|.++.+++...
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sM 94 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSM 94 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhh
Confidence 3459999999999999887 222 3699999999988654 3588888887654
No 317
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=35.47 E-value=1.4e+02 Score=29.52 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=47.7
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC---hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR---DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~---~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
-++.++++..+.+...+..|+.++..+-..+ |. -.+|.|+.|..+.++..+.+|..+++.+.+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3566667666778888888887775544333 11 1379999999999999999999999987654
No 318
>PF14353 CpXC: CpXC protein
Probab=35.30 E-value=21 Score=33.00 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=30.7
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCCCCcc
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKTKMKL 313 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l 313 (710)
+..||-|+..+.=.|-..-.-+-+....++-++. ...+||.||...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 3579999998877665555555666666665541 145799998764
No 319
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=34.90 E-value=43 Score=39.75 Aligned_cols=60 Identities=7% Similarity=-0.023 Sum_probs=43.8
Q ss_pred cccCCCCCcccccCCccccCCcee----cC---CCCccchhhHHHHhhh-----CCCCCCCCCCccCCCCCcccHHHHHH
Q 036199 260 LSRAIIPEVFKCPLSLRLMYDPVV----IE---SGQTFERMWIQKWFEE-----GNHTCPKTKMKLVCQSLTPNTAMKDL 327 (710)
Q Consensus 260 ~~~~~~p~~f~CPI~~~~m~DPV~----~~---~G~ty~r~~I~~w~~~-----g~~~cP~t~~~l~~~~l~pN~~l~~~ 327 (710)
+.....++.-.|++|..=+.+||- .+ +|+.+|-.||+.|.+. .+.+||.| ..-
T Consensus 88 E~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC---------------~~C 152 (1134)
T KOG0825|consen 88 EVDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC---------------EEC 152 (1134)
T ss_pred ccCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH---------------HHH
Confidence 345566778899999999999662 34 7999999999999863 23334444 566
Q ss_pred HHHHHHH
Q 036199 328 ISKWCMN 334 (710)
Q Consensus 328 i~~w~~~ 334 (710)
|..||.-
T Consensus 153 i~sWsR~ 159 (1134)
T KOG0825|consen 153 VGSWSRC 159 (1134)
T ss_pred hhhhhhh
Confidence 7788764
No 320
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=34.61 E-value=1.3e+02 Score=35.38 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=91.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcc---cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS---STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~---~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i 464 (710)
..+..-+++.+.-|+..||.+.+...-+-..+- ...++..++..+. .++.-|..++.+|.|+..+...+..+
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f~~~~g~~~~ 625 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLFSNPAGRELF 625 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhccCHHHHHHH
Confidence 556666888999999999999887665543332 2235556666654 35778888999999998776544433
Q ss_pred ccccchHHHHHHh---ccCcHH--HHHHHH-HHHhcc--CchhhHHHhhhCcHHHHHHhhcC-----CCHHHHHHHHHHH
Q 036199 465 LNEDLFSLLASFL---HSAAAT--EETLAI-LVALSS--YAYFISKIVASGALASILNMLDS-----PNGKFQELAIKIL 531 (710)
Q Consensus 465 ~~~gaI~~LV~lL---~s~~~~--~~Aa~~-L~~Ls~--~~~nk~~I~~~GaI~~LV~LL~~-----~~~~~~~~A~~aL 531 (710)
... ...+...+ ++...+ ..|.++ ++|++. ...+-. .|+.+.|...+.. .+.++.-.++.||
T Consensus 626 ~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Al 699 (745)
T KOG0301|consen 626 MSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVAL 699 (745)
T ss_pred HHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 322 22222211 222211 233333 345552 122111 3444444444422 2345566778888
Q ss_pred HHhccCcccccccccccchhchHHhh
Q 036199 532 HNLSSDVDIQSHIAPSEFLPKLVPFL 557 (710)
Q Consensus 532 ~nLs~~~en~~~iv~aG~V~~Lv~lL 557 (710)
.+|+..+.+..++.+.-.|..+++-+
T Consensus 700 gtL~t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 700 GTLMTVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred HhhccccHHHHHHHHhcCHHHHHHHH
Confidence 89988887777777666666666655
No 321
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=33.74 E-value=2.4e+02 Score=34.12 Aligned_cols=192 Identities=18% Similarity=0.161 Sum_probs=114.8
Q ss_pred HHHHHhc-cCCCCCccccccchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHH--HHHHhhcCCC-HH
Q 036199 450 LLLAFVS-KNRSGIPYLNEDLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALA--SILNMLDSPN-GK 522 (710)
Q Consensus 450 ~L~nL~~-~~~~k~~i~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~--~LV~LL~~~~-~~ 522 (710)
+|.+... +..+-..+++.|++..+...++.-.. ...+.+.|.+++...+++......--+. .+-.++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 5556633 33445566799999999999985432 3589999999997776665554322222 2222444333 47
Q ss_pred HHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHH-hcCcchHHHHHhhcCChHHHHHHhhc-C
Q 036199 523 FQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNM-CNTEHARVCVVETSGCLPSVAELLEI-G 600 (710)
Q Consensus 523 ~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nL-a~~~e~r~~i~~~~g~I~~Lv~lL~~-~ 600 (710)
..-.|++.|..+..+.+. .... ...+.+...+... .........+....-..+.+..++.. .
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~-------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~ 637 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTEC-------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSK 637 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccc-------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccC
Confidence 778889999888866544 1111 1122222222211 11111111111111222224455553 5
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 036199 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLL 657 (710)
Q Consensus 601 s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~LL~~l 657 (710)
.+..+-.|++++.+++...++++..+.+.|.++.+..+-... ....++.|..++...
T Consensus 638 ~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 638 SDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 777788999999999999988999999999999997773332 556667776665543
No 322
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=33.27 E-value=4.7e+02 Score=26.74 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh-----
Q 036199 484 EETLAILVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL----- 557 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL----- 557 (710)
.....+|..++.++ .+...+ +..|+.+...+..+...-+.+.+..+....+-.. +.+..++..+
T Consensus 19 ~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~~L~~~~~r~~ 88 (234)
T PF12530_consen 19 LPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQPLLLLLILRIP 88 (234)
T ss_pred HHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHHHHHHHHhhcc
Confidence 46677777777666 333333 5666666677766665556666666653322211 4444444441
Q ss_pred ---cCch----HHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHhcCC
Q 036199 558 ---KDAT----LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELL-EIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 558 ---~~~~----~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL-~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+++ ..-.....++.+|.....+ . ...++.|...| ...++..+..|+.+|..||...
T Consensus 89 ~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g-~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 89 SSFSSKDEFWECLISIAASIRDICCSRPDH----G-VDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHhChhh----H-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 1111 1222234666666643331 1 23567777788 7889999999999999999554
No 323
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=33.00 E-value=4.3e+02 Score=32.49 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=94.3
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh--cCCCHHHHHHHHHHHHHhccCcccc
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNML--DSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL--~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
.++.+..|.++....+.. ..-..+|...+..+.-...-.++-..|.++.+. .+.+|.+...+-.++..|+...+|.
T Consensus 528 ~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~ 607 (1005)
T KOG2274|consen 528 QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY 607 (1005)
T ss_pred chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence 355566666665433321 122334444444444444444556677776665 5677887777777888888755555
Q ss_pred cccccccchhchHHhhcC------chHHHHHHHHHHHHhcC---cchHHHHHhhcCChHHHHHHh-hcCCHHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFLKD------ATLAVSCLVILKNMCNT---EHARVCVVETSGCLPSVAELL-EIGSEEDQEHAVAI 611 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~------~~~~~~al~iL~nLa~~---~e~r~~i~~~~g~I~~Lv~lL-~~~s~~~ke~A~~a 611 (710)
..|. .-.||.|+..|.. ..+..-++.+|.-+-++ +-....+. -+.|++.+.. .+++...-.+|-.+
T Consensus 608 g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~---~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 608 GPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC---YAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred cchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH---HHhHHhHhheeecCChHHHHhHHHH
Confidence 4443 4578999999843 34567777777766552 22222332 3678888854 46788888999999
Q ss_pred HHHHhcCChH
Q 036199 612 LLCLCSQRDQ 621 (710)
Q Consensus 612 L~~Lc~~~~~ 621 (710)
|..+-....+
T Consensus 684 Lra~Is~~~e 693 (1005)
T KOG2274|consen 684 LRALISVTLE 693 (1005)
T ss_pred HHHHHhcCHH
Confidence 9888776643
No 324
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=32.81 E-value=51 Score=32.40 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=34.2
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc-cHHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP-NTAMKDLISKWCMN 334 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p-N~~l~~~i~~w~~~ 334 (710)
.+..|.||.|.--+ ||+ ..+.. .++||.||..|...+-.+ ...+.+.|+..-..
T Consensus 110 ~~~~y~C~~~~~r~----------sfd-----eA~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 110 ENNYYVCPNCHVKY----------SFD-----EAMEL-GFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred cCCceeCCCCCCcc----------cHH-----HHHHh-CCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 35679999886522 444 34443 378999999887654333 44667776665444
No 325
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=32.81 E-value=1.8e+02 Score=28.03 Aligned_cols=106 Identities=22% Similarity=0.310 Sum_probs=57.5
Q ss_pred chHHHHHHhccCcHH-H-HHHHHHHHhccCchhhHHHhhhC--cHHHHHHhhcCC-CHHHHHHHHHHHHHhccCcccccc
Q 036199 469 LFSLLASFLHSAAAT-E-ETLAILVALSSYAYFISKIVASG--ALASILNMLDSP-NGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 469 aI~~LV~lL~s~~~~-~-~Aa~~L~~Ls~~~~nk~~I~~~G--aI~~LV~LL~~~-~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
.+..+..+|++.+.. . .++..+..++.... ...+.+.| -+..|+.+|... ++.+++.|+.+|..|...-..+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344556677765543 2 33333333332211 33443333 378888888654 456778888877777643333333
Q ss_pred ccc-------ccchhchHHhhcCchHHHHHHHHHHHHhc
Q 036199 544 IAP-------SEFLPKLVPFLKDATLAVSCLVILKNMCN 575 (710)
Q Consensus 544 iv~-------aG~V~~Lv~lL~~~~~~~~al~iL~nLa~ 575 (710)
+.+ .+.|+.+++++.++...+.++.+|..|-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 332 23455555555555566677777766644
No 326
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=31.97 E-value=4.7e+02 Score=29.05 Aligned_cols=96 Identities=16% Similarity=0.256 Sum_probs=67.8
Q ss_pred cccccc-hhchHHhhcC-----chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh-cC---CHHHHHHHHHHHH
Q 036199 544 IAPSEF-LPKLVPFLKD-----ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE-IG---SEEDQEHAVAILL 613 (710)
Q Consensus 544 iv~aG~-V~~Lv~lL~~-----~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~-~~---s~~~ke~A~~aL~ 613 (710)
+++.+. ...|-.++.+ +.+-..|+.++..+-.++...-.+.+..|.++.+++.+. .+ +.+.--.--.+|-
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444233 4445555654 346778888888888776666555555899999999887 43 6666666667788
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhh
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~ 640 (710)
+||-++ .-.+.+.+.++++.++++..
T Consensus 181 AicLN~-~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 181 AICLNN-RGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred HHhcCH-HHHHHHHhcChHHHHHHHhC
Confidence 889887 56777888899888888743
No 327
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.92 E-value=6.4e+02 Score=26.67 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=83.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh-ccCCC-CC---
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV-SKNRS-GI--- 462 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~-~~~~~-k~--- 462 (710)
..+.+.+..++..|++.|...+--+.+. ....++.+...+.. ++..++..|+.++..+. .+... -.
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~----~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQK----DDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 3455667889999999887776544421 12246667777754 57889999999999873 22211 00
Q ss_pred ----ccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC----CHHHHHHHHHHHH
Q 036199 463 ----PYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSP----NGKFQELAIKILH 532 (710)
Q Consensus 463 ----~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~----~~~~~~~A~~aL~ 532 (710)
.......+..+.+.|.+.+.. ..|+..+..|-..+.... ....+..|+-+.-++ +...++.-...+-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 112245667777777777543 344444544432221111 133344444444322 2344443333344
Q ss_pred HhccCcccccccccccchhchHHhh
Q 036199 533 NLSSDVDIQSHIAPSEFLPKLVPFL 557 (710)
Q Consensus 533 nLs~~~en~~~iv~aG~V~~Lv~lL 557 (710)
..+.........+..+.+|.+-.+.
T Consensus 182 ~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 182 VYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 5554443333444445555554444
No 328
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=31.87 E-value=29 Score=36.58 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=31.8
Q ss_pred ccccCCcccc----CCceecCCCCccchhhHHHHhhhCCCCCCCCCC
Q 036199 269 FKCPLSLRLM----YDPVVIESGQTFERMWIQKWFEEGNHTCPKTKM 311 (710)
Q Consensus 269 f~CPI~~~~m----~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~ 311 (710)
+-|||+.+-| .+|..++|||+--..|.+.....| .+||.|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4599998764 578888999998655555555556 99999965
No 329
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=31.81 E-value=45 Score=35.69 Aligned_cols=60 Identities=13% Similarity=0.309 Sum_probs=44.3
Q ss_pred CCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
..+-|-||||.+.|.-|+-= .-||.-|-.|=. .-...||.|+.++.+ +-++++-+.++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 44558999999999999543 559999888743 235679999988874 3566777776653
No 330
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.88 E-value=38 Score=23.45 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=7.7
Q ss_pred CCCCCCCCCCc
Q 036199 302 GNHTCPKTKMK 312 (710)
Q Consensus 302 g~~~cP~t~~~ 312 (710)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34579999764
No 331
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.64 E-value=23 Score=27.32 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=11.4
Q ss_pred CCCCcccccCCcc
Q 036199 264 IIPEVFKCPLSLR 276 (710)
Q Consensus 264 ~~p~~f~CPI~~~ 276 (710)
.+|++|.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 332
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=30.46 E-value=3.2e+02 Score=28.72 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=53.3
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHHhc
Q 036199 506 SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCN 575 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~ 575 (710)
...+-.|+++|.++.+-.+...+.+|+.|-..-+.+.. ..++.+.+|+++| ..+....|+.+|.+.-.
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL-~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLL-QTDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHh-CCccHHHHHHHHHHHHh
Confidence 34577799999999999999999999999876665544 6677899999999 44556677888776543
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.93 E-value=27 Score=41.76 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=33.2
Q ss_pred cccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCC
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKM 311 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~ 311 (710)
.-.|..|.-.+.=|++- -|||.|-++|.+ .+..-||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 35788888888889884 999999999988 56778999954
No 334
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=29.44 E-value=52 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.602 Sum_probs=17.6
Q ss_pred ceecCCCCc-----cchhhHHHHhh-hCCCCCCCC
Q 036199 281 PVVIESGQT-----FERMWIQKWFE-EGNHTCPKT 309 (710)
Q Consensus 281 PV~~~~G~t-----y~r~~I~~w~~-~g~~~cP~t 309 (710)
|++.+|+-+ .=++|+++|+. ++..+|+.|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 677777533 23899999987 567778875
No 335
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=29.42 E-value=1.8e+02 Score=23.11 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHhcCChHHHHHHHhCCchHHHHHH-hhcCCHHHHHHHHHHHHHhhhccCC
Q 036199 612 LLCLCSQRDQYCKLVMNEGVIPSLVKI-SVYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 612 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L-~~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
|+.||... .-+..+.+.|+.+.|-.+ ....++.+++..-.+..+|-.-...
T Consensus 2 LllL~~T~-~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e 53 (58)
T PF04064_consen 2 LLLLCATR-EGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPE 53 (58)
T ss_pred HhHHhccH-HHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 56677765 678899999999988666 4445788999999999987655443
No 336
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.25 E-value=2.5e+02 Score=25.07 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=50.4
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHH---h---hcCCHHHHHHHHHHHHHhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKI---S---VYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L---~---~~gt~~~k~kA~~LL~~l~ 658 (710)
++..|.+-|.+.++..+-.|+.+|-.+..+.+ .....+.....+..++.+ - ..-+..+|+++..|++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45667777788899999999999999988774 556666666655555442 1 1226678999999887653
No 337
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=28.93 E-value=60 Score=29.27 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHH
Q 036199 563 AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEE 603 (710)
Q Consensus 563 ~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~ 603 (710)
....+.-|..||..|+--..+++ .|+++.|+.+|.+.+..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~-l~~v~sL~~LL~HeN~D 102 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVE-LGAVPSLLGLLSHENTD 102 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHH-cCCHHHHHHHHCCCCcc
Confidence 56668888888888888888888 78899999988875543
No 338
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.93 E-value=30 Score=38.89 Aligned_cols=70 Identities=20% Similarity=0.395 Sum_probs=51.8
Q ss_pred cCCCCCcccccCC-ccccCCceec--CCCCccchhhHHHHhhh-CCCCCCCCCCccCCCCCcccHHHHHHHHHHHH
Q 036199 262 RAIIPEVFKCPLS-LRLMYDPVVI--ESGQTFERMWIQKWFEE-GNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 262 ~~~~p~~f~CPI~-~~~m~DPV~~--~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~ 333 (710)
....|++..||+| .+.|.|-.++ .|+.+||-.||++.+-. +..-|+.|.. ..-.+.|+..++..+..-..
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRILA 286 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHHHh
Confidence 3578899999999 9999999988 88999999999998753 2334444432 23356777777777766544
No 339
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.90 E-value=1.8e+02 Score=26.78 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=49.7
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH-HHHHHHhC-CchHHHHHHhh-----cC---CHHHHHHHHHHHHHhhh
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ-YCKLVMNE-GVIPSLVKISV-----YG---NDKAKVSALELRRLLRD 659 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~-G~v~~Lv~L~~-----~g---t~~~k~kA~~LL~~l~~ 659 (710)
+..|.+-|...++-+|-.|+.+|..||..++. .+..+.+. -+|..+.+... .| +..+|..|..++.++-.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 45677777788899999999999999987753 44444433 34556665543 22 44688999999997754
No 340
>PLN02400 cellulose synthase
Probab=28.50 E-value=33 Score=42.60 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=36.3
Q ss_pred ccccCCccc-----cCCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRL-----MYDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~-----m~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
=.|.||++= .-+|-+. .||.-.||.|.+-=.++|+..||.|+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 379999763 4556554 788889999997667789999999998776
No 341
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=28.24 E-value=2e+02 Score=31.13 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHhccCcccccccccc-cchhchHHhh----cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHH
Q 036199 520 NGKFQELAIKILHNLSSDVDIQSHIAPS-EFLPKLVPFL----KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVA 594 (710)
Q Consensus 520 ~~~~~~~A~~aL~nLs~~~en~~~iv~a-G~V~~Lv~lL----~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv 594 (710)
++-++--|+.+|.+|...++.+..+-.. -.-..++.++ .+..++-..+-+++.|.-+++..+.|-..-..|--|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3335556777888888777766554332 2333455555 3456789999999999998888765544345677788
Q ss_pred HHhhc-CCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCC-chHHHHHHhhcC
Q 036199 595 ELLEI-GSEEDQEHAVAILLCLCSQRD-QYCKLVMNEG-VIPSLVKISVYG 642 (710)
Q Consensus 595 ~lL~~-~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G-~v~~Lv~L~~~g 642 (710)
.+++. ...++-.-++++++++|...+ .....+.-.| +.+....|+..+
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erk 292 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERK 292 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcC
Confidence 88775 355666778999999998443 3444444444 544444444433
No 342
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=27.99 E-value=25 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=8.3
Q ss_pred CCCCcccccCCcc
Q 036199 264 IIPEVFKCPLSLR 276 (710)
Q Consensus 264 ~~p~~f~CPI~~~ 276 (710)
.+|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 6799999999964
No 343
>PHA02862 5L protein; Provisional
Probab=27.50 E-value=40 Score=31.83 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=33.6
Q ss_pred ccCCccccCCceecCCCC-----ccchhhHHHHhh-hCCCCCCCCCCccCCCCCcccHHHHHHHHHHHH
Q 036199 271 CPLSLRLMYDPVVIESGQ-----TFERMWIQKWFE-EGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 271 CPI~~~~m~DPV~~~~G~-----ty~r~~I~~w~~-~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~ 333 (710)
|=||.+-=.|. .-+|.. -.-++|+++|+. ++..+||.|+.++.-+ +. .+-..+|.-
T Consensus 5 CWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik---~~---yKpf~kW~~ 66 (156)
T PHA02862 5 CWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK---KT---YVSFKKWNW 66 (156)
T ss_pred EEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE---Ec---cccHHHhhc
Confidence 55555543333 234432 233899999997 4678899999887532 21 224667753
No 344
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.90 E-value=1.9e+02 Score=30.49 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=58.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC----chHHHHHHHHHHHHhcCcchHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD----ATLAVSCLVILKNMCNTEHARVC 582 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~----~~~~~~al~iL~nLa~~~e~r~~ 582 (710)
.+|..|++-+..++.-.+..++-++..|- ..-+||.|.+.|.+ +-++..|+.+|..++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence 35777777776666666666776665443 44567888887733 4457777777776653
Q ss_pred HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
+.+++.|.+.+...++-+++.+..+|-.
T Consensus 250 ----e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 250 ----EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred ----HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567777777777777777777777644
No 345
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=26.63 E-value=46 Score=32.84 Aligned_cols=36 Identities=19% Similarity=0.528 Sum_probs=27.5
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCc
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~ 312 (710)
-+.||.|+.+|-|-+-- =-..+|..|+.+ ||.....
T Consensus 87 IYICPFTGKVF~DNt~~-----nPQDAIYDWvSk----CPeN~ER 122 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTHP-----NPQDAIYDWVSK----CPENTER 122 (238)
T ss_pred EEEcCCcCccccCCCCC-----ChHHHHHHHHhh----CCccchh
Confidence 48999999999997322 227899999974 8887543
No 346
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.57 E-value=6.4e+02 Score=32.99 Aligned_cols=206 Identities=11% Similarity=0.113 Sum_probs=110.1
Q ss_pred HHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCc
Q 036199 402 IEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAA 481 (710)
Q Consensus 402 l~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~ 481 (710)
-.+|..||.+ +.+++.|-.++++-.+. -.-..+.-|+.-+..++.....+..-.-...||.|.+.=.+++
T Consensus 942 YKELc~LASd-------l~qPdLVYKFM~LAnh~---A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~ 1011 (1702)
T KOG0915|consen 942 YKELCNLASD-------LGQPDLVYKFMQLANHN---ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPD 1011 (1702)
T ss_pred HHHHHHHHhh-------cCChHHHHHHHHHhhhh---chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCc
Confidence 4455555543 23344444444444431 1112233444444444433322222122345777777766777
Q ss_pred HH-HHHHHHHHHhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc-ccchhchHHhhc
Q 036199 482 AT-EETLAILVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP-SEFLPKLVPFLK 558 (710)
Q Consensus 482 ~~-~~Aa~~L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~-aG~V~~Lv~lL~ 558 (710)
.. +.|-.-+|+--..+ .+...---...+.-|+.-|.+..=++++.++-||..|-..+++-...-. ...-..+.+.+.
T Consensus 1012 ~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1012 KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 64 57777788654332 2221111134455666666666679999999999999977655322111 122223333343
Q ss_pred C-----chHHHHHHHHHHHHhc----Cc---chHHHHHhhcCChHHHHH--HhhcCCHHHHHHHHHHHHHHhcCChH
Q 036199 559 D-----ATLAVSCLVILKNMCN----TE---HARVCVVETSGCLPSVAE--LLEIGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 559 ~-----~~~~~~al~iL~nLa~----~~---e~r~~i~~~~g~I~~Lv~--lL~~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
| .+..+.++.+|..|+. .. .+++.+ + ..+|.|++ ++ +.-++++..++..|.-|....+.
T Consensus 1092 DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~--~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1092 DIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-D--IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-H--HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchh
Confidence 3 2345667777777654 22 222222 2 24566554 33 45678889999999999887743
No 347
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=61 Score=35.78 Aligned_cols=59 Identities=20% Similarity=0.497 Sum_probs=38.1
Q ss_pred CcccccCCccccCC---ceecCCCCccchhhHHHHhh----hCCC---CCCCCCCccCCCCCcccHHHHHHHH
Q 036199 267 EVFKCPLSLRLMYD---PVVIESGQTFERMWIQKWFE----EGNH---TCPKTKMKLVCQSLTPNTAMKDLIS 329 (710)
Q Consensus 267 ~~f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~----~g~~---~cP~t~~~l~~~~l~pN~~l~~~i~ 329 (710)
.-|.|-||.+-..- =+-++|+|.||+.|...+|. .|.. .||.++= .....|+ .++.++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C---~~~a~~g-~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC---GSVAPPG-QVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC---cccCCch-HHHHHHH
Confidence 45889999875533 34579999999999999985 3332 3655432 2233333 6666664
No 348
>PRK10869 recombination and repair protein; Provisional
Probab=26.41 E-value=1.1e+03 Score=27.60 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHHHHhhccchhhhcCC--CchhhHHHHHHHHHHHHHHHHHHhccccchhHHHhhh-h--HHHHHHHHHHHHHHHHHhh
Q 036199 31 FVERIAKVFPEIEAARPR--CSSGVQALCLLNNAIGKAKSLLQYCSESSKLYLAITG-G--VIVSRCMRSTNMMEQSLSQ 105 (710)
Q Consensus 31 ~~~ri~ll~pllEelr~~--~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~-~--~i~~~~~~~~~~l~~~L~~ 105 (710)
..+|+..+--.++||... .+.....|..-+..|..+..+.+.+... |-++.. + .+...+..+...+...-.-
T Consensus 183 ~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~l~~~~~~l~~~~~~ 259 (553)
T PRK10869 183 RAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNA---LQLLADGEEVNILSQLYSAKQLLSELIGM 259 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcccHHHHHHHHHHHHHHHhhh
Confidence 345667776677777532 2333445555555555555555554432 111222 1 3333333333333332111
Q ss_pred hhhh-----hhhhHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHhhccccCCCcChHHHHHHHHHHhccCCCCHHHH
Q 036199 106 IESM-----VPVMLAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180 (710)
Q Consensus 106 i~~~-----~~~~l~~~v~~~~~~l~~a~~~~d~~d~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~l~i~s~~~~ 180 (710)
-|.+ .-.++..+++++..++++..-.++..++++ +.|.+ .+..|..+.++-| .+..++
T Consensus 260 d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l-~~ie~---------------Rl~~l~~L~rKyg-~~~~~~ 322 (553)
T PRK10869 260 DSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRL-AELEQ---------------RLSKQISLARKHH-VSPEEL 322 (553)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-HHHHH---------------HHHHHHHHHHHhC-CCHHHH
Confidence 1100 001223345555555554433333333232 22221 2456677888888 467888
Q ss_pred HHHHHHHHHHHHHhCCCCh
Q 036199 181 LIEKRSIKKLLDKVGDSDQ 199 (710)
Q Consensus 181 ~~E~~~l~~~~~~~~~~~~ 199 (710)
..-...+++.++.....+.
T Consensus 323 ~~~~~~l~~eL~~L~~~e~ 341 (553)
T PRK10869 323 PQHHQQLLEEQQQLDDQED 341 (553)
T ss_pred HHHHHHHHHHHHHhhCCHH
Confidence 7777777777776554333
No 349
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.34 E-value=61 Score=26.78 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=29.7
Q ss_pred ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHH
Q 036199 281 PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324 (710)
Q Consensus 281 PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l 324 (710)
..|-.--+|||..|-+.-| +..||.|+-.|...-..|--.|
T Consensus 22 A~ICtfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 22 ARICTFECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred eeEEEEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 3333445799999998776 4579999988877777775444
No 350
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=26.04 E-value=1.8e+02 Score=25.27 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=48.4
Q ss_pred HHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH
Q 036199 554 VPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 554 v~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
+..|.|+ .++..++..|+.|..... ..+....+.+..+...|+..++=+=-+|+..|..||...++
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3344453 578899999999988655 22323245667777788888888999999999999987754
No 351
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=26.01 E-value=45 Score=32.47 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=17.3
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCc
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~ 312 (710)
.+.||+|+.++.|. -...||.|+.+
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 78899995554442 34579999865
No 352
>PRK12495 hypothetical protein; Provisional
Probab=25.98 E-value=92 Score=31.60 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 036199 182 IEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKY 215 (710)
Q Consensus 182 ~E~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 215 (710)
.|+..|++ +... ++.+-.-.+.|..||++.
T Consensus 8 aEREkLRE---Kye~-d~~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 8 AEREKLRE---KYEQ-DEQKREATERMSELLLQG 37 (226)
T ss_pred HHHHHHHH---HHhh-hHHHHHHHHHHHHHHHhh
Confidence 46666665 3333 222223467778888765
No 353
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=25.82 E-value=74 Score=30.64 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=31.4
Q ss_pred cccccCCccccCCceecCCCC-----ccchhhHHHHhh-hCCCCCCCCCCccCC
Q 036199 268 VFKCPLSLRLMYDPVVIESGQ-----TFERMWIQKWFE-EGNHTCPKTKMKLVC 315 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~-----ty~r~~I~~w~~-~g~~~cP~t~~~l~~ 315 (710)
+-.|=||.+-.. +..-+|.. ..-++|+++|++ ++...||.|++++.-
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345777776542 33345543 225899999997 467789999987653
No 354
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=25.38 E-value=1.6e+03 Score=29.05 Aligned_cols=173 Identities=19% Similarity=0.199 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcc--CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc----cccccccccchhchHH
Q 036199 482 ATEETLAILVALSS--YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD----IQSHIAPSEFLPKLVP 555 (710)
Q Consensus 482 ~~~~Aa~~L~~Ls~--~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e----n~~~iv~aG~V~~Lv~ 555 (710)
.+.+|+..|..||. +++++. ..++|-+|.++.+....++..|+.+|..+...-. +-..+.-.=..|.|-.
T Consensus 439 tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 34588888888884 344433 3469999999999999999999999988764211 1112222334555666
Q ss_pred hhcC--chH----HHHHHHHHHHHhc---------------C-c-----------chHHHHHhhcCChHHHHH-HhhcCC
Q 036199 556 FLKD--ATL----AVSCLVILKNMCN---------------T-E-----------HARVCVVETSGCLPSVAE-LLEIGS 601 (710)
Q Consensus 556 lL~~--~~~----~~~al~iL~nLa~---------------~-~-----------e~r~~i~~~~g~I~~Lv~-lL~~~s 601 (710)
++.| ... -..+++.|+.-|. + + .+..++.. .|..+|. +|...+
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~---~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH---TVEQMVSSLLSDSP 591 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH---HHHHHHHHHHcCCc
Confidence 6644 111 1122222222111 0 0 11122222 2444444 333345
Q ss_pred HHHHHHHHHHHHHHhcCC---------------------hHHHHHH---------------HhCCchHHHHHHhhcCCHH
Q 036199 602 EEDQEHAVAILLCLCSQR---------------------DQYCKLV---------------MNEGVIPSLVKISVYGNDK 645 (710)
Q Consensus 602 ~~~ke~A~~aL~~Lc~~~---------------------~~~~~~v---------------~~~G~v~~Lv~L~~~gt~~ 645 (710)
+-+|..-+..+.-||..- ..-|..+ .+++.+|.|.+-+.++.+.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~ 671 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA 671 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh
Confidence 577776666677777211 1112222 2455577777778999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 036199 646 AKVSALELRRLLRDVA 661 (710)
Q Consensus 646 ~k~kA~~LL~~l~~~~ 661 (710)
+-.+|...|..|-+..
T Consensus 672 Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 672 VIVSALGSLSILIKLG 687 (1431)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 9999998888665543
No 355
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=25.38 E-value=4.2e+02 Score=23.47 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=56.3
Q ss_pred HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 581 VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 581 ~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
..+++..+.+..|++.....+.-.++.+...|..|..++ ...+.+.+-|++.-|-.+-.+-++..+.....++.
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~-~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP-YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc-HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 344443455666666666666668999999999998887 55688889999999999988888888777777664
No 356
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=3.4e+02 Score=31.03 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=87.4
Q ss_pred cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHHH---HHHHHHHHhccCc
Q 036199 421 STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATE---ETLAILVALSSYA 497 (710)
Q Consensus 421 ~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~~---~Aa~~L~~Ls~~~ 497 (710)
+.|.+..++..|.....+++...+..|+..|.|.++....|..-...-.+..++.-|.++...+ .|..+|.-+...-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 4577777777776544456778888999999999776433333334456677777676665443 3444443332211
Q ss_pred hhhHHHhhhCcHH---HHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccc----cchhchHHhhcCchH-HHHHHHH
Q 036199 498 YFISKIVASGALA---SILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPS----EFLPKLVPFLKDATL-AVSCLVI 569 (710)
Q Consensus 498 ~nk~~I~~~GaI~---~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~a----G~V~~Lv~lL~~~~~-~~~al~i 569 (710)
.++. ...+.++ .+..+..+.+++.+..|..+...|+.......++.-. +...+|+-.|.++.. ...|+..
T Consensus 332 ~~~~--l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 332 SNDD--LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred hhcc--hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 1111 1233333 3556678889999999988888888765555544332 233344445555433 3344444
Q ss_pred HHHHh
Q 036199 570 LKNMC 574 (710)
Q Consensus 570 L~nLa 574 (710)
.-..|
T Consensus 410 ~~~~c 414 (533)
T KOG2032|consen 410 ELRTC 414 (533)
T ss_pred HHHhc
Confidence 44333
No 357
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=25.30 E-value=2.6e+02 Score=26.82 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh------hHHHHHHHHHHHHH
Q 036199 81 LAITGGVIVSRCMRSTNMMEQSLSQIESMVPV------MLAVEISQIIDDLR 126 (710)
Q Consensus 81 l~~~~~~i~~~~~~~~~~l~~~L~~i~~~~~~------~l~~~v~~~~~~l~ 126 (710)
-++..+.|...|..+.+.+.+.|..+|+.+.- +--..|..+++++|
T Consensus 88 ~Lipa~eV~~~~s~~~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR 139 (152)
T PF07278_consen 88 QLIPAEEVRREMSEMAKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLR 139 (152)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999986543 22234555566666
No 358
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=25.07 E-value=43 Score=31.31 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=31.8
Q ss_pred cccccCCccccCC--cee-cCCCCc------cchhhHHHHhhhCCCCCCCCCC
Q 036199 268 VFKCPLSLRLMYD--PVV-IESGQT------FERMWIQKWFEEGNHTCPKTKM 311 (710)
Q Consensus 268 ~f~CPI~~~~m~D--PV~-~~~G~t------y~r~~I~~w~~~g~~~cP~t~~ 311 (710)
...|.||.+-..+ =|+ +++|.| ||.+|+++|- ..+...|.-+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~-~~~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR-RERNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH-hhccCCCcccc
Confidence 4569999998887 555 577765 7899999995 34566777654
No 359
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.65 E-value=2.4e+02 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 509 LASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 509 I~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
|.+||++|.+.+......|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 899999998888888899999887654
No 360
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.52 E-value=1.6e+02 Score=26.75 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=32.0
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 036199 588 GCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVM 627 (710)
Q Consensus 588 g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~ 627 (710)
-+|+.||.-|...++++...|+.+|...|... .+...++
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 46889999999999999999999999999887 4444333
No 361
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.44 E-value=1.5e+02 Score=31.91 Aligned_cols=132 Identities=17% Similarity=0.266 Sum_probs=79.5
Q ss_pred chhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 387 LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 387 L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
|..|.+.+|+..+.++.-|+.|+...++....+. .-.|-.+++-+++ ....+-+.|+.++..+++.-.+++. +
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKN----lRS~VsraA~~t~~difs~ln~~i~--~ 166 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKN----LRSAVSRAACMTLADIFSSLNNSID--Q 166 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 3678888999999999999999877665443322 2345566676766 5567778888888887654333322 1
Q ss_pred ccchHHHHHHh-ccCc-H----HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 036199 467 EDLFSLLASFL-HSAA-A----TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHN 533 (710)
Q Consensus 467 ~gaI~~LV~lL-~s~~-~----~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~n 533 (710)
.+..++..| ..++ . .+.|-.+|..+..+-. -.-+++.|+..+...++.+...++....+
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 444455444 3322 1 2566666655542211 12246666666777777776665554433
No 362
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=44 Score=36.17 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=35.9
Q ss_pred ccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 269 FKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
-.|=||+.=-+|=|+++|-|. .|..|-+.- .-.++.||+|++++..
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchHh
Confidence 679999999999999999985 577775543 2235679999998754
No 363
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=24.02 E-value=68 Score=36.28 Aligned_cols=154 Identities=13% Similarity=0.063 Sum_probs=86.1
Q ss_pred cccchHHHHHHhccCc--HHHHHHHHHHHhcc----CchhhHHHhh--hC-cHHHHHHhh---cCCCHHHHHHHHHHHHH
Q 036199 466 NEDLFSLLASFLHSAA--ATEETLAILVALSS----YAYFISKIVA--SG-ALASILNML---DSPNGKFQELAIKILHN 533 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~--~~~~Aa~~L~~Ls~----~~~nk~~I~~--~G-aI~~LV~LL---~~~~~~~~~~A~~aL~n 533 (710)
-..+...+...|.+.. .++.|++++.|++. .-.+.....+ .| .+..++..- ......++.+|..+|.|
T Consensus 431 v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgn 510 (728)
T KOG4535|consen 431 VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGN 510 (728)
T ss_pred HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence 4566667777666533 34688888888762 1111111111 12 123333222 23346788899999999
Q ss_pred hccCcccc----cccccccchhchHHhh-cC--chHHHHHHHHHHHHhcCcchHHHHHhh-cCChHHHHHHhhc-CCHHH
Q 036199 534 LSSDVDIQ----SHIAPSEFLPKLVPFL-KD--ATLAVSCLVILKNMCNTEHARVCVVET-SGCLPSVAELLEI-GSEED 604 (710)
Q Consensus 534 Ls~~~en~----~~iv~aG~V~~Lv~lL-~~--~~~~~~al~iL~nLa~~~e~r~~i~~~-~g~I~~Lv~lL~~-~s~~~ 604 (710)
++..-+-. -.....|.+..++... .. -.++-+++-++.||-.++.-+-+-..- ....+.|..++.. .+-++
T Consensus 511 llQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 511 LLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 98522111 1111223333333222 11 256889999999999987542211111 2346777777764 68888
Q ss_pred HHHHHHHHHHHhcCC
Q 036199 605 QEHAVAILLCLCSQR 619 (710)
Q Consensus 605 ke~A~~aL~~Lc~~~ 619 (710)
+-+|+++|..-....
T Consensus 591 Ri~AA~aL~vp~~re 605 (728)
T KOG4535|consen 591 RIRAAAALSVPGKRE 605 (728)
T ss_pred eehhhhhhcCCCCcc
Confidence 999999997766544
No 364
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.73 E-value=1.2e+03 Score=27.19 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=66.6
Q ss_pred HHHHHHhhccchhhhcCC--CchhhHHHHHHHHHHHHHHHHHHhccccchhHHHhhhh------HHHHHHHHHHHHHHHH
Q 036199 31 FVERIAKVFPEIEAARPR--CSSGVQALCLLNNAIGKAKSLLQYCSESSKLYLAITGG------VIVSRCMRSTNMMEQS 102 (710)
Q Consensus 31 ~~~ri~ll~pllEelr~~--~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~------~i~~~~~~~~~~l~~~ 102 (710)
.-+++..+--.++||... .+.....|..-+..|..+..+.+.+... |.++..+ .+...+..+...+...
T Consensus 187 ~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~~~~~l~~~ 263 (563)
T TIGR00634 187 LAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGEAQLALASV 263 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHHHHHHHHHh
Confidence 344666666666666532 2344555665566666666665555433 2222222 3444554444444443
Q ss_pred Hh-hhhhh--hhhhHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHhhccccCCCcChHHHHHHHHHHhccCCCCHHH
Q 036199 103 LS-QIESM--VPVMLAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKA 179 (710)
Q Consensus 103 L~-~i~~~--~~~~l~~~v~~~~~~l~~a~~~~d~~d~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~l~i~s~~~ 179 (710)
++ .+..+ .-.++..+++++..++++..-.++...+++.+ +.+ ....++.+.++.| .+..+
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e-le~---------------RL~~l~~LkrKyg-~s~e~ 326 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE-IEE---------------RLAQIKRLKRKYG-ASVEE 326 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHH---------------HHHHHHHHHHHhC-CCHHH
Confidence 10 00000 00122335556666666543333333222222 221 1234455556666 35666
Q ss_pred HHHHHHHHHHHHHHhC
Q 036199 180 ILIEKRSIKKLLDKVG 195 (710)
Q Consensus 180 ~~~E~~~l~~~~~~~~ 195 (710)
+......+++.++...
T Consensus 327 l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 327 VLEYAEKIKEELDQLD 342 (563)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666665555444
No 365
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.58 E-value=6.3e+02 Score=26.36 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=42.7
Q ss_pred cccchhchHHhhcCch----------HHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC--CHHHHHHHHHHHH
Q 036199 546 PSEFLPKLVPFLKDAT----------LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG--SEEDQEHAVAILL 613 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~~~----------~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~--s~~~ke~A~~aL~ 613 (710)
+.-+.|+|+++++.++ +.+.--.+|+.++ .|-++.|-+++... +.-+|-.|+.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5678899999985321 2333344444443 35566666666654 4455777888888
Q ss_pred HHhcCChHHHHHHH
Q 036199 614 CLCSQRDQYCKLVM 627 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~ 627 (710)
.+...++..|..++
T Consensus 139 ~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 139 FLVHEGPISREEVI 152 (249)
T ss_pred HHHHcCCCCHHHHH
Confidence 87777655455444
No 366
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=23.54 E-value=44 Score=34.98 Aligned_cols=47 Identities=21% Similarity=0.524 Sum_probs=30.1
Q ss_pred CCcccccCCccccCC-------------cee-cCCCCccchhhHHHHhhhC---------CCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLMYD-------------PVV-IESGQTFERMWIQKWFEEG---------NHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m~D-------------PV~-~~~G~ty~r~~I~~w~~~g---------~~~cP~t~~~l~~~ 316 (710)
+.-|.|++|...+.- |-. .-||.-|.|- |+-+| .+.||.|++.+.++
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRP----WLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRP----WLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccch----HHhhcccccccCCCCccCCcccchhcch
Confidence 566888888776531 222 2466677665 55444 34699999888764
No 367
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=23.45 E-value=56 Score=27.51 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=21.3
Q ss_pred cccCCcccc-----CCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 270 KCPLSLRLM-----YDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 270 ~CPI~~~~m-----~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.|.||++=. -+|.+. .||.-.||.|.+-=...|+..||.|+.++..
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 477776522 233333 6677889999998888999999999877653
No 368
>PRK14707 hypothetical protein; Provisional
Probab=23.37 E-value=2.1e+03 Score=29.92 Aligned_cols=231 Identities=15% Similarity=0.124 Sum_probs=124.0
Q ss_pred cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHH-hccCCCCCccccccchHHHHHHhc----cCcHHHHHHHHHHHhcc
Q 036199 421 STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLH----SAAATEETLAILVALSS 495 (710)
Q Consensus 421 ~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~~LV~lL~----s~~~~~~Aa~~L~~Ls~ 495 (710)
..-.+...++-|+.. .+..+-++|+.+|-.- +.+..-+.. ++.--+...+.-|+ .+.....|..+-..|..
T Consensus 245 ~~q~va~~lN~lsKw---p~~~~C~~a~~~lA~rl~~~~~l~~a-l~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~ 320 (2710)
T PRK14707 245 KPQELGNALNALSKW---ADTPVCAAAASALAERLVDDPGLRKA-LDPINVTQALNALSKWADLPVCAEAAIALAERLAD 320 (2710)
T ss_pred ChHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHhhhHHHHHh-cCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence 444566666767654 5666666777666643 333322221 22222222333332 22222344444456666
Q ss_pred CchhhHHHhhhCcHHHHHHhh-cCCC-HHHHHHHHHHHHHhccCcccccccccccchhchHHhhc---CchH-HHHHHHH
Q 036199 496 YAYFISKIVASGALASILNML-DSPN-GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK---DATL-AVSCLVI 569 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL-~~~~-~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~---~~~~-~~~al~i 569 (710)
+.+-+..+-..+ +..+++-| +-++ ..+.+.|...-..|+.+++-+..+- .-+|...+.-|+ +... ...|...
T Consensus 321 d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 321 DPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred cHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 555554443333 33334433 4444 4444444444446666666555554 444555555553 3333 4444444
Q ss_pred HHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC-HHHH
Q 036199 570 LKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN-DKAK 647 (710)
Q Consensus 570 L~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt-~~~k 647 (710)
-..|...++-+..+-. .+|..++.-|.. .+..+-..|+..|..--.++.+.++.+--.++...|-.+++=.+ +..+
T Consensus 399 A~~l~~d~~l~~~~~~--Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 399 AEHVVDDLELRKGLDP--QGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHhccChhhhhhcch--hhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 4466667777777754 467888887776 56666667777776666666677777766677777766666554 4445
Q ss_pred HHHHHHHHHhhh
Q 036199 648 VSALELRRLLRD 659 (710)
Q Consensus 648 ~kA~~LL~~l~~ 659 (710)
..|..|...|..
T Consensus 477 ~aa~~La~~l~~ 488 (2710)
T PRK14707 477 QTASALAARLAH 488 (2710)
T ss_pred HHHHHHHHHhcc
Confidence 555556665553
No 369
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=23.12 E-value=23 Score=26.08 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=8.7
Q ss_pred CCCCCCCCCCccCCCCC
Q 036199 302 GNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 302 g~~~cP~t~~~l~~~~l 318 (710)
|...||.||..+....+
T Consensus 18 g~~vC~~CG~Vl~e~~i 34 (43)
T PF08271_consen 18 GELVCPNCGLVLEENII 34 (43)
T ss_dssp TEEEETTT-BBEE-TTB
T ss_pred CeEECCCCCCEeecccc
Confidence 44567777766655443
No 370
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=23.04 E-value=1.2e+03 Score=26.78 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHhccC-C-CCCccccccchHHHHHHhccC-c--HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHH
Q 036199 440 DSRAQRIGCRLLLAFVSKN-R-SGIPYLNEDLFSLLASFLHSA-A--ATEETLAILVALSSYAYFISKIVASGALASILN 514 (710)
Q Consensus 440 d~~~q~~A~~~L~nL~~~~-~-~k~~i~~~gaI~~LV~lL~s~-~--~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~ 514 (710)
..+-++.|..-|..+.... . .... .-...+..++++|+.. + .++.|..+|..++.+...|-.=-..=+|-.+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq-~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQ-HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHH-HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3445555555555553221 1 0100 0123455666667652 2 135677777766644322211111224555555
Q ss_pred hhcCCCHHHHHHHHHH-HHHhccCcccccccccccchhchHHhh--cCchHHHHHHHHHHHHhc--CcchHHHHHhhcCC
Q 036199 515 MLDSPNGKFQELAIKI-LHNLSSDVDIQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCN--TEHARVCVVETSGC 589 (710)
Q Consensus 515 LL~~~~~~~~~~A~~a-L~nLs~~~en~~~iv~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~--~~e~r~~i~~~~g~ 589 (710)
.-.+..+++...|... +.-|+++..-. .|..+..++ .|....-.++..+..|.. ..|.-..++. ..
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~--di 449 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP--DI 449 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh--hh
Confidence 5444444443333332 22333322111 112222222 233344445556666665 2333334443 57
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
.|.+++--.+.+..+|..|+-+|..+-
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 899999999999999999999998764
No 371
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=22.99 E-value=8e+02 Score=28.06 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=69.5
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHH-HHHHHHHhcCcchHHHHH
Q 036199 509 LASILNMLDS-PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSC-LVILKNMCNTEHARVCVV 584 (710)
Q Consensus 509 I~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~a-l~iL~nLa~~~e~r~~i~ 584 (710)
+..+++.|.. .+...++.|++.|..++.++..+-.=-..-+|-.+++.-.+ +++...| =.++..|+++..-
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----- 405 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----- 405 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-----
Confidence 4566777765 67778888888888888665543221112233444443322 2222222 2234444443221
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
.+|..+..++.+.+...--.++..+-.|+.+=..---.-+=..+.|.++.--.+.+.-+|+.|.-.|=.+
T Consensus 406 ---~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 406 ---QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred ---hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 2344444445443333333334444555544322111112234566667666666777777776655433
No 372
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.82 E-value=3.9e+02 Score=25.23 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=49.0
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHH
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVV 584 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~ 584 (710)
....-..+..+|.++++++++.|+.+|+.--.. .+.. .=+.|-.++.+..+.++-.. +. +......-..--
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-----~l~p--Y~d~L~~Lldd~~frdeL~~-f~-~~~~~~~I~~eh 85 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKDP-----YLTP--YKDNLENLLDDKTFRDELTT-FN-LSDESSVIEEEH 85 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHh--HHHHHHHHcCcchHHHHHHh-hc-ccCCcCCCCHHH
Confidence 445566778999999999999999999875320 1111 12446667777767666322 21 222211111111
Q ss_pred hhcCChHHHHHHhh
Q 036199 585 ETSGCLPSVAELLE 598 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~ 598 (710)
+ +..+|.++++|-
T Consensus 86 R-~~l~pvvlRILy 98 (141)
T PF07539_consen 86 R-PELMPVVLRILY 98 (141)
T ss_pred H-hHHHHHHHHHHH
Confidence 2 466788888774
No 373
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=22.74 E-value=1e+02 Score=29.78 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
+..|.||-|..-+ || ...++ ..++||.||.+|.+.
T Consensus 107 ~~~Y~Cp~c~~r~----------tf-----~eA~~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRF----------TF-----NEAME-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEe----------eH-----HHHHH-cCCcCCCCCCEeeec
Confidence 6689999876311 22 22222 368999999988653
No 374
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=22.48 E-value=2.6e+02 Score=26.89 Aligned_cols=137 Identities=14% Similarity=0.200 Sum_probs=68.9
Q ss_pred cchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
..++.|.++|+++.. +.++..+|..|-..|-++.+-...+. +.-. -.+.+..... ..+.+....+ .-...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~---~~l~~~~~~~-~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTD---ISLPMMGISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchh---hHHhhccCCC-chHHH
Confidence 346677788877643 35888888777766665555332110 0000 0000111111 1111111111 11222
Q ss_pred ccccchhchHHhhcCchH---HHHHHHHHHHHhcC--cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 545 APSEFLPKLVPFLKDATL---AVSCLVILKNMCNT--EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~~~~---~~~al~iL~nLa~~--~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
.-..++..|+..|.|+.+ ...++.++.++-.. ......+ ...||.++..+++.++..+|.-..-|..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L---~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL---PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH---HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334577888998888654 23344444444432 2222222 3478999999998777777765544443
No 375
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.34 E-value=4.2e+02 Score=31.67 Aligned_cols=147 Identities=15% Similarity=0.231 Sum_probs=89.7
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCc-H--HHHHHHHHHHhccCchhh
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAA-A--TEETLAILVALSSYAYFI 500 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~-~--~~~Aa~~L~~Ls~~~~nk 500 (710)
+.+.++.+|....+..+..+|+.++..+-..+.--. ...+..-.+|.|-.+-.... . +.+++.++..+. +..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~l 460 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRL 460 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHH
Confidence 334444444443344789999999998888754221 23345566777766633222 2 246777776665 222
Q ss_pred HHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchH----HHHHHHHHHHHhc
Q 036199 501 SKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL----AVSCLVILKNMCN 575 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~----~~~al~iL~nLa~ 575 (710)
....-..-++++..-.+..++........+..++....-+...++...++|.++.+...+.+ -.+.+..+..+.+
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ml~ 539 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLMLS 539 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHh
Confidence 22222334566666667888999988888888888766665666778888988888755433 2233444444444
No 376
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.32 E-value=1.1e+02 Score=30.12 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=32.4
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc-ccHHHHHHHHHHHHHcC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT-PNTAMKDLISKWCMNLC 336 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~-pN~~l~~~i~~w~~~~~ 336 (710)
+..|.||-|..-+ ||+ ..++ ..++||.||.+|...+=. --..|+..|..--...+
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCEEECCCCCcEE----------eHH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 5689999876322 332 2222 468999999998764211 12356666666544433
No 377
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.26 E-value=65 Score=22.60 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=7.0
Q ss_pred CCCCCCCCc
Q 036199 304 HTCPKTKMK 312 (710)
Q Consensus 304 ~~cP~t~~~ 312 (710)
..||.|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 479999875
No 378
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=22.18 E-value=8.5e+02 Score=24.83 Aligned_cols=124 Identities=19% Similarity=0.142 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccccccchH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLNEDLFS 471 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~~gaI~ 471 (710)
.+.+.+...++.|..++..+. -.++..++.|..-...+..+.+--+...+..+-. +++ . -+.+.
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~---------~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~----f~~L~ 77 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN---------VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--H----FPFLQ 77 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc---------cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--H----HHHHH
Confidence 466778888999988887661 1233334443332222444554445555555532 221 1 14444
Q ss_pred HHHHHh--c------cCcH-HH---HHHHHHHHhccCchhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhc
Q 036199 472 LLASFL--H------SAAA-TE---ETLAILVALSSYAYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 472 ~LV~lL--~------s~~~-~~---~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs 535 (710)
.++..+ + ++.. .+ ..++++..++....+ -....++.|-.+| ...++..+..|+.+|..|+
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 444431 1 1111 12 345677777755444 1233588888888 7888889999999999998
No 379
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=21.93 E-value=5.1e+02 Score=22.19 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhccc---CCCchHHHHHHHHHHHhhccccCCCcChHHHHHHHHHH
Q 036199 93 MRSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREATFI---LDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAA 169 (710)
Q Consensus 93 ~~~~~~l~~~L~~i~~~~~~~l~~~v~~~~~~l~~a~~~---~d~~d~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a 169 (710)
+..-.+|.+-|++.+ .+..+.+..+..+..+++++-.. .+..+..+.+.+..++..|.. +.| .=..+++.|.
T Consensus 3 ~~~L~~L~~eL~~~~-~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~-~HP---~l~~~lr~i~ 77 (85)
T PF14357_consen 3 QELLEKLHQELEQNP-PLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEA-SHP---KLAGILRNIM 77 (85)
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHH-hCC---cHHHHHHHHH
Confidence 344445555565565 34455566677777777665433 456778888888888888754 222 2345555555
Q ss_pred hc
Q 036199 170 SR 171 (710)
Q Consensus 170 ~~ 171 (710)
..
T Consensus 78 ~s 79 (85)
T PF14357_consen 78 DS 79 (85)
T ss_pred HH
Confidence 44
No 380
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=21.81 E-value=78 Score=30.25 Aligned_cols=23 Identities=39% Similarity=0.888 Sum_probs=17.2
Q ss_pred CCCCccchhhHHHHhh----------hCCCCCCCCCCc
Q 036199 285 ESGQTFERMWIQKWFE----------EGNHTCPKTKMK 312 (710)
Q Consensus 285 ~~G~ty~r~~I~~w~~----------~g~~~cP~t~~~ 312 (710)
.+||+|| -||. .|.-+||+|+..
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCC
Confidence 5689995 4774 367889999864
No 381
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.81 E-value=29 Score=36.40 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=29.5
Q ss_pred CcccccCCccccCCceecCCCCcc-chhhHHHHhhhCC--CCCCCCCCc
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTF-ERMWIQKWFEEGN--HTCPKTKMK 312 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty-~r~~I~~w~~~g~--~~cP~t~~~ 312 (710)
.+.+|-||++.-+|=|.++|||-. |-.| |. ..||+|+|.
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqy 340 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHH
Confidence 388999999999999999999965 1222 32 358888764
No 382
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=21.74 E-value=4.1e+02 Score=32.73 Aligned_cols=141 Identities=14% Similarity=0.071 Sum_probs=84.6
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc-cccchHHHHHHhccCcH--HHHHHHHHHHhccCchh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL-NEDLFSLLASFLHSAAA--TEETLAILVALSSYAYF 499 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~-~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~n 499 (710)
..+|.|++...+ .+...+.+-..+|.+...+-.....+- -...+|.|++.|+-++. +-.+..++.-+-.....
T Consensus 867 ~ivP~l~~~~~t----~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 867 DIVPILVSKFET----APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred hhHHHHHHHhcc----CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 567777777764 233445555666666655433222221 24678888888886664 23444444322211110
Q ss_pred hHHHhhhCcHHHHHHhhcCCC---HHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCc--hHHHHHH
Q 036199 500 ISKIVASGALASILNMLDSPN---GKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCL 567 (710)
Q Consensus 500 k~~I~~~GaI~~LV~LL~~~~---~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al 567 (710)
-..---.-.+|.++.+=.+.+ ..++..|+.+|..|.. -|-+.-.-.+-.++.+|.+.|+|+ -++..|+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 000001234777777765544 6788999999999997 666666667788899999999875 3455554
No 383
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.39 E-value=78 Score=37.41 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred CCCCCcccccCCccccCCceecCCCCc
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQT 289 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~t 289 (710)
+..|.+..||-|.--| ||-+++|.-
T Consensus 1126 ~i~~~~~~c~ec~~kf--P~CiasG~p 1150 (1189)
T KOG2041|consen 1126 KIDPYDLQCSECQTKF--PVCIASGRP 1150 (1189)
T ss_pred cCCccCCCChhhcCcC--ceeeccCCc
Confidence 4457789999999855 999999863
No 384
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.27 E-value=66 Score=33.73 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=33.5
Q ss_pred CcccccCCccccCCceecCC----CCccc----hhhHHHHhhhCCCCCCCC
Q 036199 267 EVFKCPLSLRLMYDPVVIES----GQTFE----RMWIQKWFEEGNHTCPKT 309 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~----G~ty~----r~~I~~w~~~g~~~cP~t 309 (710)
.-++|-+|.|-+.|-..+.| +|.|| |+.|++--..|.-+||.-
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG 317 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG 317 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC
Confidence 34999999999999987755 79999 666666655666778865
No 385
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=20.93 E-value=3.4e+02 Score=32.31 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=60.9
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHHhc-CcchHHHHH
Q 036199 506 SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCN-TEHARVCVV 584 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~-~~e~r~~i~ 584 (710)
.-.+|.|+..+.-|+ ...+.+..|+.+...-+... .+.+.+|.|++++..++-.-. +..|.++=. .+.--..++
T Consensus 292 ~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR-~~LL~~i~~~i~~Lt~~~~ 366 (690)
T KOG1243|consen 292 SKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIR-LLLLQYIEKYIDHLTKQIL 366 (690)
T ss_pred HHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHH-HHHHHhHHHHhhhcCHHhh
Confidence 334455554444444 33334444444443222222 677899999999966543322 223333322 111223455
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
. .-.+|.++.-+...++..+|.++..+..|+.
T Consensus 367 ~-d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 367 N-DQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred c-chhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 5 4678888888888999999999988877753
No 386
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.87 E-value=93 Score=38.41 Aligned_cols=67 Identities=16% Similarity=0.041 Sum_probs=35.6
Q ss_pred CcccccCCccccCCceecCCC-----CccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCC
Q 036199 267 EVFKCPLSLRLMYDPVVIESG-----QTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G-----~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
..+.||=|+....-..=-.|| ..||..| .+. .+..+||.|+..+.... .-+..++.....-.+..|+
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~-~~~y~CPKCG~El~~~s-~~~i~l~~~~~~A~~~lg~ 696 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE-VEEDECEKCGREPTPYS-KRKIDLKELYDRALENLGE 696 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc-CCCCcCCCCCCCCCccc-eEEecHHHHHHHHHHHhCC
Confidence 346677777664111111255 3477777 332 23567999998876543 1223455555555555444
No 387
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.81 E-value=50 Score=34.62 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=21.5
Q ss_pred ccchhhHHHHhh------------hCCCCCCCCCCccCC
Q 036199 289 TFERMWIQKWFE------------EGNHTCPKTKMKLVC 315 (710)
Q Consensus 289 ty~r~~I~~w~~------------~g~~~cP~t~~~l~~ 315 (710)
-.||+|+-+||. +|..+||.|++.++-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 577999999983 367889999987754
No 388
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.78 E-value=34 Score=21.04 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=8.4
Q ss_pred ccccCCccccCCc
Q 036199 269 FKCPLSLRLMYDP 281 (710)
Q Consensus 269 f~CPI~~~~m~DP 281 (710)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4677777666654
No 389
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.78 E-value=2.3e+02 Score=26.81 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=63.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcc-cchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQ-VSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~-~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
.+|.+.++.+|..|+.-|..+.+.... .+..|++..++..|++++... .+..++...+.++...+..-.+.. +
T Consensus 44 KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~~~f~~~~---~ 117 (144)
T cd03568 44 KRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWADEFKNDP---S 117 (144)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHhCCCc---c
Confidence 678888999999999999999887654 456788899999999999763 678999999999998865333211 2
Q ss_pred ccchHHHHHHhc
Q 036199 467 EDLFSLLASFLH 478 (710)
Q Consensus 467 ~gaI~~LV~lL~ 478 (710)
.+.|.-+...|.
T Consensus 118 l~~i~~~y~~L~ 129 (144)
T cd03568 118 LSLMSDLYKKLK 129 (144)
T ss_pred cHHHHHHHHHHH
Confidence 334444544443
No 390
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=20.28 E-value=4.2e+02 Score=29.24 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccC-------CCHHHHHHHHHHHHHHhccCCCCCccc-
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDL-------HDSRAQRIGCRLLLAFVSKNRSGIPYL- 465 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~-------~d~~~q~~A~~~L~nL~~~~~~k~~i~- 465 (710)
+.+.+..|-..|....+..+..-....-..-++.+++++..+... .|.+.-..|+.+|..+..+...-..+-
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 344455555555444433221111111123355555555443222 356677778888877765442211111
Q ss_pred c-c-cchHHHHHHhccCcHHH-HHHHHHHHhccCchhhHHHhhhCcHHHHHHhh---c--CCCHHHHHHHHHHHHHhccC
Q 036199 466 N-E-DLFSLLASFLHSAAATE-ETLAILVALSSYAYFISKIVASGALASILNML---D--SPNGKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~-~-gaI~~LV~lL~s~~~~~-~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL---~--~~~~~~~~~A~~aL~nLs~~ 537 (710)
+ . -.+...+..|.++...+ -+...|+-|+. ......+.....+..|+..+ . -++..+...++.++.+|...
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~-Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q 164 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLSD-QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQ 164 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 1 1 14566666776665533 34444444443 22223344444455555544 2 34556667777888887743
Q ss_pred ccccccccc-cc-chhchHHhhc--CchHHHHHHHHHHHHh
Q 036199 538 VDIQSHIAP-SE-FLPKLVPFLK--DATLAVSCLVILKNMC 574 (710)
Q Consensus 538 ~en~~~iv~-aG-~V~~Lv~lL~--~~~~~~~al~iL~nLa 574 (710)
. ...|++ ++ -+|.|+..+- ..++...|..++..++
T Consensus 165 ~--p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 165 F--PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred H--HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 2 222433 33 5667666652 3456666665555554
No 391
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=20.22 E-value=1.5e+03 Score=26.88 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036199 560 ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 560 ~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
..++..++.+|+.+..+-........ +|.+..|.+-+-...+.++..|+.+|..+
T Consensus 105 k~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 105 KKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred hhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45677888888888775333334444 56777777777777778888888887554
No 392
>PRK00420 hypothetical protein; Validated
Probab=20.19 E-value=66 Score=29.22 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=8.7
Q ss_pred CCCCCCCCCCccC
Q 036199 302 GNHTCPKTKMKLV 314 (710)
Q Consensus 302 g~~~cP~t~~~l~ 314 (710)
|..+||.|+..+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 4455999987543
No 393
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.18 E-value=72 Score=25.00 Aligned_cols=10 Identities=40% Similarity=0.683 Sum_probs=7.1
Q ss_pred CCCCCCCCCc
Q 036199 303 NHTCPKTKMK 312 (710)
Q Consensus 303 ~~~cP~t~~~ 312 (710)
.-+||+|++.
T Consensus 28 PlyCpKCK~E 37 (55)
T PF14205_consen 28 PLYCPKCKQE 37 (55)
T ss_pred cccCCCCCce
Confidence 3469999764
No 394
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.11 E-value=54 Score=33.66 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=29.2
Q ss_pred CCce-ecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 279 YDPV-VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 279 ~DPV-~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
.||. +++|+|.||-.|-..-. ...||.|++++.-..+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 5565 46999999988854332 2389999999776667766
No 395
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.08 E-value=1.3e+03 Score=27.97 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred chhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 387 LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 387 L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
|....+.+-.++...+..|..+.. +...+.--+..+..+.+..-|.. ..+.++..|+.+|..+-.++.+ -+
T Consensus 91 LRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~D----rep~VRiqAv~aLsrlQ~d~~d----ee 161 (892)
T KOG2025|consen 91 LRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKD----REPNVRIQAVLALSRLQGDPKD----EE 161 (892)
T ss_pred HhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhcCCCC----Cc
Q ss_pred ccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhh-----------------------------------------
Q 036199 467 EDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVA----------------------------------------- 505 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~----------------------------------------- 505 (710)
..++..++.++.+..+.+---++|.+++.+......|++
T Consensus 162 ~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnD 241 (892)
T KOG2025|consen 162 CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLND 241 (892)
T ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh
Q ss_pred ---------------------hCcHHHHHHhhcCCCH-HHHHHHHHHHHH
Q 036199 506 ---------------------SGALASILNMLDSPNG-KFQELAIKILHN 533 (710)
Q Consensus 506 ---------------------~GaI~~LV~LL~~~~~-~~~~~A~~aL~n 533 (710)
.|-|+-|++-|+-.+. ++...|+.||+.
T Consensus 242 Re~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 242 REFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
No 396
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=20.03 E-value=51 Score=33.38 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.3
Q ss_pred CCcccccCCccccCCce
Q 036199 266 PEVFKCPLSLRLMYDPV 282 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV 282 (710)
---|.||+|+-+|..|+
T Consensus 258 ~~GfvCsVCLsvfc~p~ 274 (296)
T COG5242 258 LLGFVCSVCLSVFCRPV 274 (296)
T ss_pred EEeeehhhhheeecCCc
Confidence 34599999999999884
Done!