Query 036199
Match_columns 710
No_of_seqs 479 out of 2570
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 3.8E-30 1.3E-34 278.7 19.3 265 397-663 48-338 (354)
2 3nmz_A APC variant protein; pr 100.0 4.4E-29 1.5E-33 278.4 18.5 263 398-662 165-453 (458)
3 1xm9_A Plakophilin 1; armadill 99.9 9.3E-28 3.2E-32 269.2 17.1 268 388-661 9-362 (457)
4 3l6x_A Catenin delta-1; cateni 99.9 1.2E-26 4.2E-31 264.5 18.8 268 388-661 55-386 (584)
5 1xm9_A Plakophilin 1; armadill 99.9 3.6E-25 1.2E-29 248.2 22.2 268 388-662 51-452 (457)
6 3nmz_A APC variant protein; pr 99.9 1.3E-25 4.5E-30 250.4 15.7 267 393-659 94-408 (458)
7 3nmw_A APC variant protein; AR 99.9 2.8E-25 9.5E-30 240.5 11.6 223 394-621 97-338 (354)
8 3l6x_A Catenin delta-1; cateni 99.9 7.7E-24 2.6E-28 241.5 21.8 265 388-658 97-475 (584)
9 3now_A UNC-45 protein, SD10334 99.9 3.4E-24 1.2E-28 252.1 18.7 269 388-660 428-738 (810)
10 4hxt_A De novo protein OR329; 99.9 2.3E-23 7.7E-28 211.9 21.2 238 423-665 2-247 (252)
11 3now_A UNC-45 protein, SD10334 99.9 8.7E-24 3E-28 248.7 20.4 273 388-665 502-788 (810)
12 3tpo_A Importin subunit alpha- 99.9 1.5E-23 5.1E-28 239.2 20.9 268 388-660 126-407 (529)
13 3ul1_B Importin subunit alpha- 99.9 2E-23 6.7E-28 237.2 21.5 270 388-660 64-346 (510)
14 3ul1_B Importin subunit alpha- 99.9 1.2E-23 4.3E-28 238.9 18.8 268 388-660 107-388 (510)
15 4db8_A Armadillo-repeat protei 99.9 4.1E-23 1.4E-27 211.1 17.5 233 422-659 11-251 (252)
16 3tt9_A Plakophilin-2; cell adh 99.9 4.9E-24 1.7E-28 216.7 9.8 191 423-618 8-230 (233)
17 3tpo_A Importin subunit alpha- 99.9 2.1E-22 7E-27 229.8 23.9 269 388-660 83-365 (529)
18 4b8j_A Importin subunit alpha- 99.9 8.4E-22 2.9E-26 223.9 25.6 268 388-659 81-358 (528)
19 4db8_A Armadillo-repeat protei 99.9 7.6E-23 2.6E-27 209.1 12.3 226 388-618 19-252 (252)
20 4b8j_A Importin subunit alpha- 99.9 1.3E-21 4.4E-26 222.4 22.8 268 388-660 124-401 (528)
21 4hxt_A De novo protein OR329; 99.9 7.5E-22 2.6E-26 200.6 17.1 227 388-619 9-243 (252)
22 3tt9_A Plakophilin-2; cell adh 99.9 6.5E-22 2.2E-26 201.1 14.5 192 468-661 8-231 (233)
23 1wa5_B Importin alpha subunit; 99.9 9E-21 3.1E-25 215.7 24.3 268 388-659 94-370 (530)
24 1wa5_B Importin alpha subunit; 99.9 9.1E-21 3.1E-25 215.7 22.9 268 388-660 137-413 (530)
25 2jdq_A Importin alpha-1 subuni 99.9 7.4E-20 2.5E-24 202.2 27.3 268 388-660 114-391 (450)
26 2jdq_A Importin alpha-1 subuni 99.8 4.2E-20 1.4E-24 204.2 23.1 267 388-660 71-348 (450)
27 1jdh_A Beta-catenin; beta-cate 99.8 1.5E-20 5.2E-25 212.4 19.6 268 388-660 24-340 (529)
28 4db6_A Armadillo repeat protei 99.8 3.3E-20 1.1E-24 184.3 19.6 193 466-659 10-209 (210)
29 2z6h_A Catenin beta-1, beta-ca 99.8 1.6E-20 5.5E-25 219.1 20.2 267 388-659 21-336 (644)
30 2kr4_A Ubiquitin conjugation f 99.8 7.6E-22 2.6E-26 169.1 5.8 74 262-336 8-81 (85)
31 1wgm_A Ubiquitin conjugation f 99.8 3.1E-21 1.1E-25 169.5 8.6 76 262-338 16-92 (98)
32 2kre_A Ubiquitin conjugation f 99.8 2.2E-21 7.6E-26 171.1 7.4 75 261-336 22-96 (100)
33 1jdh_A Beta-catenin; beta-cate 99.8 7E-20 2.4E-24 206.9 19.9 266 388-660 108-386 (529)
34 4db6_A Armadillo repeat protei 99.8 7.9E-20 2.7E-24 181.5 14.8 193 421-618 10-210 (210)
35 2z6h_A Catenin beta-1, beta-ca 99.8 3.1E-19 1E-23 208.2 21.3 266 388-660 105-383 (644)
36 2f42_A STIP1 homology and U-bo 99.8 1.1E-20 3.7E-25 182.8 7.1 76 263-338 101-176 (179)
37 2z6g_A B-catenin; FULL-length, 99.8 2.7E-19 9.1E-24 213.3 19.2 261 388-661 122-391 (780)
38 2z6g_A B-catenin; FULL-length, 99.8 9.7E-19 3.3E-23 208.4 21.2 265 388-661 367-665 (780)
39 3opb_A SWI5-dependent HO expre 99.8 1E-18 3.6E-23 202.2 14.5 242 415-660 449-729 (778)
40 1t1h_A Gspef-atpub14, armadill 99.8 3.4E-19 1.2E-23 150.0 6.2 75 263-337 3-77 (78)
41 1xqr_A HSPBP1 protein; armadil 99.8 1E-17 3.4E-22 176.8 16.7 176 484-660 58-239 (296)
42 3opb_A SWI5-dependent HO expre 99.7 2.6E-17 8.9E-22 190.6 19.3 267 388-658 341-682 (778)
43 2c2l_A CHIP, carboxy terminus 99.7 1E-18 3.6E-23 182.6 6.9 77 262-338 202-278 (281)
44 2yu4_A E3 SUMO-protein ligase 99.7 9.2E-19 3.1E-23 152.8 4.6 72 265-336 4-84 (94)
45 1xqr_A HSPBP1 protein; armadil 99.7 4.6E-17 1.6E-21 171.7 13.7 217 440-657 53-285 (296)
46 3m62_A Ubiquitin conjugation f 99.6 8.6E-17 2.9E-21 188.0 5.8 74 262-336 885-959 (968)
47 2bay_A PRE-mRNA splicing facto 99.6 1.8E-16 6E-21 126.5 2.2 55 268-323 3-58 (61)
48 3ztg_A E3 ubiquitin-protein li 99.6 7.6E-15 2.6E-19 127.3 8.6 75 263-337 8-85 (92)
49 3htk_C E3 SUMO-protein ligase 99.5 1.4E-14 4.7E-19 146.4 9.8 71 264-334 177-251 (267)
50 3fl2_A E3 ubiquitin-protein li 99.4 5.6E-14 1.9E-18 128.8 5.0 69 265-333 49-118 (124)
51 1z6u_A NP95-like ring finger p 99.4 1.5E-13 5E-18 130.2 5.0 69 265-333 75-144 (150)
52 2y43_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 114.6 5.3 70 265-335 19-89 (99)
53 3grl_A General vesicular trans 99.3 9E-11 3.1E-15 133.0 19.7 263 388-657 28-340 (651)
54 2ckl_A Polycomb group ring fin 99.3 2.2E-12 7.4E-17 115.2 4.6 68 264-332 11-83 (108)
55 2egp_A Tripartite motif-contai 99.3 2.8E-13 9.7E-18 113.7 -1.4 64 264-327 8-77 (79)
56 3l11_A E3 ubiquitin-protein li 99.3 1.8E-12 6.1E-17 117.1 3.3 68 265-332 12-86 (115)
57 1jm7_B BARD1, BRCA1-associated 99.2 3.6E-12 1.2E-16 115.6 5.2 68 265-335 19-87 (117)
58 2ecw_A Tripartite motif-contai 99.2 1.4E-12 4.6E-17 110.8 1.9 66 263-328 14-84 (85)
59 3hct_A TNF receptor-associated 99.2 3.8E-12 1.3E-16 115.5 4.8 69 263-331 13-81 (118)
60 3lrq_A E3 ubiquitin-protein li 99.2 2.8E-12 9.6E-17 112.9 3.7 72 264-335 18-90 (100)
61 2ckl_B Ubiquitin ligase protei 99.2 3.4E-12 1.1E-16 122.9 4.0 70 264-333 50-121 (165)
62 2yur_A Retinoblastoma-binding 99.2 1.2E-11 4.2E-16 102.5 6.8 60 262-321 9-71 (74)
63 2ecv_A Tripartite motif-contai 99.2 2.2E-12 7.5E-17 109.5 2.0 65 263-327 14-83 (85)
64 2csy_A Zinc finger protein 183 99.2 6.7E-12 2.3E-16 105.9 4.1 64 264-329 11-74 (81)
65 2ecy_A TNF receptor-associated 99.2 1.8E-11 6E-16 99.1 6.1 55 264-318 11-65 (66)
66 2djb_A Polycomb group ring fin 99.2 4.2E-11 1.4E-15 98.6 6.7 58 263-321 10-68 (72)
67 1jm7_A BRCA1, breast cancer ty 99.2 1.2E-11 4.2E-16 110.8 3.8 70 265-334 18-89 (112)
68 4ayc_A E3 ubiquitin-protein li 99.1 2.4E-11 8.3E-16 113.3 4.4 64 266-332 51-114 (138)
69 3hcs_A TNF receptor-associated 99.1 3.3E-11 1.1E-15 116.5 4.0 68 264-331 14-81 (170)
70 3knv_A TNF receptor-associated 99.1 1.6E-11 5.5E-16 114.9 1.0 67 264-330 27-102 (141)
71 2ysl_A Tripartite motif-contai 99.1 1.3E-10 4.5E-15 95.7 6.3 56 263-318 15-72 (73)
72 1rmd_A RAG1; V(D)J recombinati 99.1 6.4E-11 2.2E-15 107.0 4.3 66 265-330 20-86 (116)
73 1g25_A CDK-activating kinase a 99.1 8.6E-11 2.9E-15 94.7 4.2 55 267-321 2-61 (65)
74 3grl_A General vesicular trans 99.0 6.3E-09 2.1E-13 118.0 20.5 259 394-657 75-392 (651)
75 2ysj_A Tripartite motif-contai 99.0 2.5E-10 8.5E-15 91.3 5.6 46 264-309 16-63 (63)
76 3ltm_A Alpha-REP4; protein eng 99.0 3.5E-08 1.2E-12 97.5 19.8 185 421-661 17-205 (211)
77 2ecj_A Tripartite motif-contai 98.9 6.9E-10 2.3E-14 87.0 5.4 46 264-309 11-58 (58)
78 3ng2_A RNF4, snurf, ring finge 98.9 2.8E-10 9.5E-15 93.2 3.2 57 265-322 7-70 (71)
79 2d8t_A Dactylidin, ring finger 98.9 6.2E-10 2.1E-14 91.3 4.4 51 265-316 12-62 (71)
80 3ltj_A Alpharep-4; protein eng 98.9 5.4E-08 1.8E-12 95.4 18.5 184 420-659 11-198 (201)
81 2ct2_A Tripartite motif protei 98.9 2E-09 6.8E-14 91.9 6.3 53 264-316 11-69 (88)
82 2xeu_A Ring finger protein 4; 98.8 6E-10 2.1E-14 89.1 1.8 55 267-322 2-63 (64)
83 2ea6_A Ring finger protein 4; 98.8 1.7E-09 5.7E-14 87.8 4.3 52 263-315 10-68 (69)
84 2ect_A Ring finger protein 126 98.8 5.7E-09 2E-13 87.0 6.1 57 264-321 11-70 (78)
85 1e4u_A Transcriptional repress 98.8 7.8E-09 2.7E-13 86.4 5.6 54 265-318 8-65 (78)
86 3ltm_A Alpha-REP4; protein eng 98.7 4.2E-07 1.4E-11 89.6 18.8 177 388-620 26-206 (211)
87 4gmo_A Putative uncharacterize 98.7 7.2E-08 2.5E-12 113.0 14.8 188 468-657 34-256 (684)
88 3ltj_A Alpharep-4; protein eng 98.7 5.3E-07 1.8E-11 88.2 18.8 175 386-616 19-197 (201)
89 1oyz_A Hypothetical protein YI 98.7 6.7E-07 2.3E-11 92.2 18.7 119 507-657 128-248 (280)
90 1oyz_A Hypothetical protein YI 98.7 4.5E-07 1.5E-11 93.5 17.1 118 506-655 158-278 (280)
91 4ap4_A E3 ubiquitin ligase RNF 98.6 1.2E-08 4.3E-13 93.6 2.8 55 266-321 5-66 (133)
92 2ecn_A Ring finger protein 141 98.6 1.3E-08 4.4E-13 83.0 2.3 52 264-317 11-62 (70)
93 2ecm_A Ring finger and CHY zin 98.6 3.2E-08 1.1E-12 76.5 4.4 47 267-314 4-54 (55)
94 1chc_A Equine herpes virus-1 r 98.6 3.2E-08 1.1E-12 80.1 4.5 48 267-315 4-52 (68)
95 2ep4_A Ring finger protein 24; 98.6 6.9E-08 2.4E-12 79.5 6.0 52 264-316 11-65 (74)
96 1bor_A Transcription factor PM 98.6 2.1E-08 7.1E-13 78.2 2.5 46 266-315 4-49 (56)
97 1iym_A EL5; ring-H2 finger, ub 98.5 9.2E-08 3.1E-12 73.9 4.7 48 266-314 3-54 (55)
98 2kiz_A E3 ubiquitin-protein li 98.5 1.5E-07 5.2E-12 76.3 5.6 50 265-315 11-63 (69)
99 2l0b_A E3 ubiquitin-protein li 98.5 1E-07 3.5E-12 82.0 4.6 50 265-315 37-89 (91)
100 1v87_A Deltex protein 2; ring- 98.4 1.2E-07 4.2E-12 84.9 4.8 50 266-315 23-94 (114)
101 1x4j_A Ring finger protein 38; 98.4 2.4E-07 8.2E-12 76.5 5.7 49 266-315 21-72 (75)
102 4fdd_A Transportin-1; heat rep 98.4 3.4E-06 1.2E-10 100.9 16.7 264 388-660 135-430 (852)
103 4ic3_A E3 ubiquitin-protein li 98.4 9.1E-08 3.1E-12 79.0 1.9 45 266-315 22-67 (74)
104 2y1n_A E3 ubiquitin-protein li 98.4 1.8E-07 6.2E-12 100.5 4.3 49 268-316 332-380 (389)
105 4gmo_A Putative uncharacterize 98.3 9.1E-07 3.1E-11 103.7 9.4 152 507-659 34-214 (684)
106 4fdd_A Transportin-1; heat rep 98.3 1.4E-06 4.9E-11 104.3 11.1 264 388-660 181-472 (852)
107 4ap4_A E3 ubiquitin ligase RNF 98.2 1.7E-07 5.9E-12 85.9 0.9 56 266-322 70-132 (133)
108 1wim_A KIAA0161 protein; ring 98.2 2.6E-07 8.8E-12 80.0 0.8 66 267-333 4-83 (94)
109 2ecg_A Baculoviral IAP repeat- 98.2 6.3E-07 2.2E-11 74.1 3.1 46 266-316 23-69 (75)
110 1ibr_B P95, importin beta-1 su 98.2 9.1E-06 3.1E-10 89.0 13.0 266 388-662 135-440 (462)
111 2vgl_B AP-2 complex subunit be 98.2 8.7E-05 3E-09 85.2 21.2 254 388-659 128-420 (591)
112 2vgl_B AP-2 complex subunit be 98.0 2.6E-05 8.9E-10 89.6 13.6 248 389-660 57-312 (591)
113 2ecl_A Ring-box protein 2; RNF 98.0 3.4E-06 1.1E-10 70.8 3.8 48 267-315 14-76 (81)
114 1b3u_A Protein (protein phosph 98.0 3.3E-05 1.1E-09 87.3 13.4 254 389-659 172-431 (588)
115 1b3u_A Protein (protein phosph 98.0 1.9E-05 6.6E-10 89.3 11.3 253 388-659 331-587 (588)
116 2vje_A E3 ubiquitin-protein li 97.9 5.4E-06 1.9E-10 66.2 3.0 48 266-314 6-56 (64)
117 3t6p_A Baculoviral IAP repeat- 97.9 3.5E-06 1.2E-10 89.9 2.3 46 265-315 292-338 (345)
118 2vje_B MDM4 protein; proto-onc 97.9 5.3E-06 1.8E-10 66.1 2.7 47 268-315 7-56 (63)
119 3dpl_R Ring-box protein 1; ubi 97.8 1.2E-05 3.9E-10 71.1 4.2 46 268-314 37-100 (106)
120 2yho_A E3 ubiquitin-protein li 97.8 4.7E-06 1.6E-10 69.6 1.6 46 266-316 16-62 (79)
121 2ea5_A Cell growth regulator w 97.7 5.6E-05 1.9E-09 61.1 5.9 45 266-315 13-58 (68)
122 2d8s_A Cellular modulator of i 97.6 6.4E-05 2.2E-09 62.8 5.6 51 266-316 13-71 (80)
123 1ibr_B P95, importin beta-1 su 97.6 0.00037 1.3E-08 76.1 13.4 260 388-660 8-289 (462)
124 3dad_A FH1/FH2 domain-containi 97.5 0.00039 1.3E-08 73.0 11.5 149 512-660 123-288 (339)
125 2bpt_A Importin beta-1 subunit 97.5 0.00019 6.6E-09 85.1 10.3 263 388-660 376-669 (861)
126 1w63_A Adapter-related protein 97.5 0.002 6.8E-08 74.3 17.8 206 388-620 41-266 (618)
127 2qk2_A LP04448P; mini spindles 97.5 0.00092 3.2E-08 67.2 12.8 177 388-575 22-205 (242)
128 2qk2_A LP04448P; mini spindles 97.4 0.0012 4.2E-08 66.2 13.3 177 427-619 19-207 (242)
129 1qgr_A Protein (importin beta 97.4 0.00033 1.1E-08 83.3 10.3 266 388-660 373-680 (876)
130 1qgr_A Protein (importin beta 97.4 0.0016 5.6E-08 77.2 16.4 266 388-661 135-439 (876)
131 1w63_A Adapter-related protein 97.4 0.00096 3.3E-08 77.0 13.9 243 388-659 114-414 (618)
132 1u6g_C TIP120 protein, CAND1; 97.4 0.00037 1.3E-08 86.7 10.9 263 386-660 11-285 (1230)
133 4a0k_B E3 ubiquitin-protein li 97.3 3.2E-05 1.1E-09 69.4 0.0 45 269-314 49-111 (117)
134 2bpt_A Importin beta-1 subunit 97.3 0.0012 4.2E-08 78.1 12.9 265 388-660 418-712 (861)
135 2qk1_A Protein STU2; STU2P, XM 97.1 0.0026 9.1E-08 64.6 12.1 187 386-575 21-220 (249)
136 3b2a_A TON_1937, putative unch 97.1 0.011 3.9E-07 58.6 15.5 203 388-611 40-255 (265)
137 1te4_A Conserved protein MTH18 96.9 0.00021 7.1E-09 64.9 1.5 117 466-614 10-130 (131)
138 1te4_A Conserved protein MTH18 96.9 9.4E-05 3.2E-09 67.3 -1.3 118 505-655 10-129 (131)
139 3b2a_A TON_1937, putative unch 96.9 0.0074 2.5E-07 60.0 12.0 216 422-659 32-261 (265)
140 2vgl_A Adaptor protein complex 96.8 0.041 1.4E-06 63.4 19.7 240 388-655 153-429 (621)
141 2qk1_A Protein STU2; STU2P, XM 96.8 0.016 5.4E-07 58.8 14.0 176 439-617 28-220 (249)
142 1u6g_C TIP120 protein, CAND1; 96.5 0.019 6.6E-07 71.3 15.1 261 388-660 140-464 (1230)
143 3dad_A FH1/FH2 domain-containi 96.4 0.043 1.5E-06 57.6 14.6 169 473-641 123-316 (339)
144 2ct0_A Non-SMC element 1 homol 96.4 0.0033 1.1E-07 51.4 4.8 47 269-315 16-64 (74)
145 2vgl_A Adaptor protein complex 96.3 0.096 3.3E-06 60.3 18.4 244 388-659 118-398 (621)
146 2db0_A 253AA long hypothetical 96.2 0.17 5.8E-06 48.5 16.0 209 422-656 31-243 (253)
147 1ho8_A Vacuolar ATP synthase s 96.1 0.035 1.2E-06 61.1 12.6 217 441-657 182-474 (480)
148 1vyx_A ORF K3, K3RING; zinc-bi 95.8 0.0082 2.8E-07 47.0 4.3 47 268-314 6-58 (60)
149 2iw3_A Elongation factor 3A; a 95.8 0.28 9.4E-06 59.0 19.1 247 399-663 70-328 (986)
150 1ho8_A Vacuolar ATP synthase s 95.2 0.15 5.3E-06 55.9 13.1 218 395-615 182-474 (480)
151 4ady_A RPN2, 26S proteasome re 95.0 0.52 1.8E-05 56.2 17.9 197 424-660 473-677 (963)
152 3tjz_B Coatomer subunit gamma; 94.7 0.28 9.7E-06 52.2 13.3 247 389-670 76-327 (355)
153 3k1l_B Fancl; UBC, ring, RWD, 94.7 0.0082 2.8E-07 62.8 1.2 48 268-315 308-373 (381)
154 3oc3_A Helicase MOT1, MOT1; re 94.2 0.49 1.7E-05 52.8 13.9 231 388-655 181-432 (800)
155 4ffb_C Protein STU2; tubulin f 93.7 0.43 1.5E-05 48.6 11.8 179 388-575 16-212 (278)
156 3tjz_B Coatomer subunit gamma; 93.5 0.28 9.6E-06 52.2 10.4 201 388-615 146-351 (355)
157 3vk6_A E3 ubiquitin-protein li 93.4 0.059 2E-06 46.1 3.7 46 270-315 3-49 (101)
158 2iw3_A Elongation factor 3A; a 93.2 4.6 0.00016 48.6 21.1 216 442-664 29-285 (986)
159 3i2d_A E3 SUMO-protein ligase 93.0 0.057 1.9E-06 57.3 3.8 63 268-330 249-315 (371)
160 2db0_A 253AA long hypothetical 92.9 4.1 0.00014 39.1 15.8 171 466-660 30-211 (253)
161 2jun_A Midline-1; B-BOX, TRIM, 92.6 0.056 1.9E-06 46.6 2.7 33 267-299 2-37 (101)
162 1wa5_C Importin alpha RE-expor 92.4 2.9 0.0001 50.2 18.5 216 439-660 417-671 (960)
163 4fo9_A E3 SUMO-protein ligase 90.9 0.17 5.8E-06 53.5 4.5 64 267-330 214-281 (360)
164 4ady_A RPN2, 26S proteasome re 90.4 28 0.00096 41.6 23.2 224 392-658 406-640 (963)
165 2fv2_A RCD1 required for cell 88.6 1.3 4.5E-05 44.5 8.6 168 444-615 73-266 (268)
166 4ffb_C Protein STU2; tubulin f 88.5 17 0.00059 36.4 17.5 180 429-619 15-214 (278)
167 3ebb_A Phospholipase A2-activa 87.3 2.7 9.3E-05 43.6 10.6 136 519-657 160-304 (304)
168 3nw0_A Non-structural maintena 87.2 0.51 1.8E-05 47.3 4.8 48 269-316 181-230 (238)
169 1upk_A MO25 protein; transfera 86.6 16 0.00054 38.2 15.7 154 502-656 73-235 (341)
170 2fv2_A RCD1 required for cell 86.3 2.7 9.4E-05 42.2 9.4 168 485-657 75-266 (268)
171 1wa5_C Importin alpha RE-expor 82.6 9.4 0.00032 45.8 13.9 218 392-616 416-669 (960)
172 2f31_A Diaphanous protein homo 81.7 5.1 0.00017 39.7 9.3 59 561-619 69-127 (233)
173 3ebb_A Phospholipase A2-activa 81.4 3.5 0.00012 42.7 8.2 128 484-612 166-301 (304)
174 3eg5_B Protein diaphanous homo 81.4 5.8 0.0002 42.5 10.2 99 561-659 135-246 (383)
175 2bnx_A Diaphanous protein homo 74.6 12 0.00042 39.9 10.3 59 561-619 73-131 (386)
176 1upk_A MO25 protein; transfera 73.9 89 0.0031 32.6 18.9 197 419-619 74-285 (341)
177 2f31_A Diaphanous protein homo 73.6 41 0.0014 33.0 13.2 143 506-648 42-217 (233)
178 2of3_A ZYG-9; multifunctional 73.4 49 0.0017 33.3 13.8 172 388-574 53-235 (266)
179 3eg5_B Protein diaphanous homo 72.9 70 0.0024 33.9 15.7 145 501-646 104-281 (383)
180 2x1g_F Cadmus; transport prote 71.6 27 0.00091 41.7 13.4 212 393-617 476-722 (971)
181 1weo_A Cellulose synthase, cat 68.6 5.9 0.0002 32.9 4.5 46 269-314 17-69 (93)
182 3u0r_A Apoptosis inhibitor 5; 67.0 26 0.0009 38.4 10.6 118 518-655 39-159 (507)
183 2x19_B Importin-13; nuclear tr 61.9 61 0.0021 38.4 13.8 165 484-657 467-644 (963)
184 3mjh_B Early endosome antigen 60.9 2.1 7.1E-05 29.2 0.4 15 268-282 5-19 (34)
185 1lrv_A LRV, leucine-rich repea 60.8 18 0.00061 36.1 7.5 45 590-653 196-240 (244)
186 2jvx_A NF-kappa-B essential mo 60.6 2.6 8.7E-05 27.4 0.7 16 266-281 1-16 (28)
187 3oc3_A Helicase MOT1, MOT1; re 56.6 65 0.0022 36.3 11.3 211 417-655 170-400 (800)
188 2of3_A ZYG-9; multifunctional 55.2 32 0.0011 34.7 8.3 132 390-535 96-235 (266)
189 2x19_B Importin-13; nuclear tr 53.5 93 0.0032 36.7 13.4 157 439-607 461-636 (963)
190 2bnx_A Diaphanous protein homo 53.1 2.1E+02 0.0071 30.3 14.7 136 484-646 76-219 (386)
191 2x1g_F Cadmus; transport prote 52.1 65 0.0022 38.2 11.8 166 484-659 482-663 (971)
192 3ldz_A STAM-1, signal transduc 51.2 24 0.00083 31.9 6.0 71 589-659 43-114 (140)
193 1x5b_A Signal transducing adap 47.9 31 0.0011 32.0 6.4 71 589-659 53-125 (163)
194 3qml_C Protein SLS1, nucleotid 47.8 69 0.0024 32.9 9.3 132 521-658 42-188 (315)
195 3u0r_A Apoptosis inhibitor 5; 47.5 26 0.0009 38.4 6.4 107 484-612 46-158 (507)
196 3c2g_A SYS-1 protein; beta-cat 46.1 2.2E+02 0.0074 30.0 12.6 109 404-517 265-377 (619)
197 1mhq_A ADP-ribosylation factor 44.0 34 0.0012 31.2 5.8 72 589-660 39-117 (148)
198 2kkx_A Uncharacterized protein 43.9 20 0.0007 30.4 3.8 51 266-317 25-81 (102)
199 1juq_A ADP-ribosylation factor 43.5 37 0.0013 31.8 6.2 72 589-660 51-129 (171)
200 3g2s_A C-terminal fragment of 40.3 49 0.0017 30.2 6.3 71 589-659 49-126 (149)
201 1vdy_A Hypothetical protein (R 38.5 65 0.0022 29.2 6.6 74 590-663 51-134 (140)
202 6rxn_A Rubredoxin; electron tr 37.1 10 0.00035 27.6 0.8 13 264-276 26-38 (46)
203 1lsh_A Lipovitellin (LV-1N, LV 37.0 1.2E+02 0.0041 36.7 10.8 134 467-620 355-510 (1056)
204 2bay_A PRE-mRNA splicing facto 36.5 12 0.0004 28.8 1.2 43 303-346 3-48 (61)
205 3c2g_A SYS-1 protein; beta-cat 35.3 4.2E+02 0.014 27.9 14.1 124 490-614 266-400 (619)
206 2cs3_A Protein C14ORF4, MY039 35.0 44 0.0015 27.1 4.2 43 267-309 14-64 (93)
207 4rxn_A Rubredoxin; electron tr 32.1 14 0.00047 27.9 0.8 13 264-276 32-44 (54)
208 1e8j_A Rubredoxin; iron-sulfur 31.5 16 0.00054 27.3 1.1 14 263-276 31-44 (52)
209 3gae_A Protein DOA1; UFD3, CDC 31.2 23 0.0008 35.4 2.7 130 398-540 71-221 (253)
210 1lrv_A LRV, leucine-rich repea 31.1 55 0.0019 32.5 5.4 33 622-654 186-218 (244)
211 1lsh_A Lipovitellin (LV-1N, LV 30.1 3.5E+02 0.012 32.6 13.3 102 424-535 392-506 (1056)
212 2jne_A Hypothetical protein YF 28.7 7.5 0.00026 32.8 -1.2 40 269-314 33-72 (101)
213 1x5b_A Signal transducing adap 28.6 1.3E+02 0.0043 27.8 7.1 86 388-479 59-145 (163)
214 3qml_C Protein SLS1, nucleotid 28.4 1.6E+02 0.0056 30.2 8.3 143 468-616 22-188 (315)
215 1yk4_A Rubredoxin, RD; electro 27.7 18 0.00061 27.0 0.8 13 264-276 31-43 (52)
216 2kn9_A Rubredoxin; metalloprot 27.1 20 0.00068 29.4 1.0 14 264-277 56-69 (81)
217 2v3b_B Rubredoxin 2, rubredoxi 26.5 19 0.00064 27.2 0.7 13 264-276 32-44 (55)
218 1dvp_A HRS, hepatocyte growth 26.5 90 0.0031 30.2 6.0 71 589-659 43-115 (220)
219 2xqn_T Testin, TESS; metal-bin 26.2 42 0.0014 29.2 3.2 47 266-315 28-75 (126)
220 2kw6_A Cyclin-dependent kinase 25.0 27 0.00092 27.1 1.4 38 37-74 15-56 (65)
221 1dx8_A Rubredoxin; electron tr 24.8 21 0.00073 28.3 0.8 14 264-277 36-49 (70)
222 3zyq_A Hepatocyte growth facto 24.3 98 0.0034 30.2 5.8 71 589-659 46-118 (226)
223 3pwf_A Rubrerythrin; non heme 24.1 37 0.0013 31.8 2.5 29 265-313 135-163 (170)
224 4hat_C Exportin-1; heat repeat 23.9 1.1E+02 0.0037 37.0 7.2 99 519-619 465-571 (1023)
225 1s24_A Rubredoxin 2; electron 22.2 26 0.00089 29.1 0.9 13 264-276 64-76 (87)
226 4hat_C Exportin-1; heat repeat 21.6 2.1E+02 0.007 34.5 9.0 150 423-575 447-618 (1023)
227 1elk_A Target of MYB1; superhe 21.2 1.4E+02 0.0049 27.2 5.9 71 589-659 54-130 (157)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.8e-30 Score=278.71 Aligned_cols=265 Identities=15% Similarity=0.120 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-------cCCCHHHHHHHHHHHHHHhccC-CCCCccc-cc
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-------DLHDSRAQRIGCRLLLAFVSKN-RSGIPYL-NE 467 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-------~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~-~~ 467 (710)
.+++|++.|..++.+ +++|..|++.|+++.|+.+|..+. +..++.+|++|+.+|.|++.++ .+|..+. ..
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 467899999999976 789999999999999999996421 1124679999999999997654 4676664 45
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccC--chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-Ccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSY--AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSS-DVDIQ 541 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~--~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~-~~en~ 541 (710)
|+||.||.+|++++. ++.|+++|.||+.. +++|..|++.|+||+||++| .++++.+++.|+.+|+||+. +++|+
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 679999999998875 47999999999974 68999999999999999975 67889999999999999998 77899
Q ss_pred cccc-cccchhchHHhhcCc------hHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHH
Q 036199 542 SHIA-PSEFLPKLVPFLKDA------TLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610 (710)
Q Consensus 542 ~~iv-~aG~V~~Lv~lL~~~------~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~ 610 (710)
..++ .+|+||+|+.+|.++ ++.+.|+++|+||+. +++++..+.+ .|+|+.|+.+|.+++...+++|++
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHHHHHH
Confidence 9988 799999999999542 379999999999995 8999999998 799999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCC
Q 036199 611 ILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 611 aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
+|++|+..++++++.+.+.|++|+|+.|+.++++++++.|.+.|..|......
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999988889999999999999999999999999999999999988876443
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=278.42 Aligned_cols=263 Identities=16% Similarity=0.128 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-------cCCCHHHHHHHHHHHHHHhccC-CCCCccc-ccc
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-------DLHDSRAQRIGCRLLLAFVSKN-RSGIPYL-NED 468 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-------~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~-~~g 468 (710)
+++|++.|..++. ++++|..|.+.|++++|+.+|..+. +..+..+|++|+.+|.|++.++ .+|..+. ..|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 6889999999965 4899999999999999999996321 1124678999999999997654 4666554 456
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhccC--chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALSSY--AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~--~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
+||.||.+|++++. ++.|+++|.||+.. +++|..|++.|+||+||++| .++++.+++.|+.+|+||+. +++|+.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 79999999998875 47999999999974 67999999999999999975 66789999999999999999 889999
Q ss_pred ccc-cccchhchHHhhcCc------hHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 543 HIA-PSEFLPKLVPFLKDA------TLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 543 ~iv-~aG~V~~Lv~lL~~~------~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
.++ .+|+||+|+.+|..+ ++.+.|+++|+||+. +++++..+.+ .|+|+.|+.+|.+++...+++|+++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A~~a 402 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGT 402 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHHHHH
Confidence 998 799999999999542 379999999999995 8899999998 7999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 612 LLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 612 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
|++|+..+++++..+.+.|++|+|+.|+.++++++++.|.+.|..|.....
T Consensus 403 L~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 403 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999998888999999999999999999999999999999999998887643
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=9.3e-28 Score=269.22 Aligned_cols=268 Identities=15% Similarity=0.174 Sum_probs=229.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~ 466 (710)
..|.+++++.|..|+..|+.++..++.++..+.+.|+||.||++|++ +++.+|+.|+.+|.|++.+ +.+|..+++
T Consensus 9 ~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 56788889999999999999998888889889999999999999987 7899999999999999875 788998999
Q ss_pred ccchHHHHHHhc-cCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh--------cCC--------CHHHHHHH
Q 036199 467 EDLFSLLASFLH-SAAA--TEETLAILVALSSYAYFISKIVASGALASILNML--------DSP--------NGKFQELA 527 (710)
Q Consensus 467 ~gaI~~LV~lL~-s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL--------~~~--------~~~~~~~A 527 (710)
.|+||.|+.+|. +++. .+.|+++|+||+.++++|..|++ |+||+|+++| .++ ++.+.++|
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 999999999998 7654 47999999999999999999999 9999999999 332 45666799
Q ss_pred HHHHHHhccCcccccccccc-cchhchHHhhcC--------chHHHHHHHHHHHHhcC----------------------
Q 036199 528 IKILHNLSSDVDIQSHIAPS-EFLPKLVPFLKD--------ATLAVSCLVILKNMCNT---------------------- 576 (710)
Q Consensus 528 ~~aL~nLs~~~en~~~iv~a-G~V~~Lv~lL~~--------~~~~~~al~iL~nLa~~---------------------- 576 (710)
+++|+|||.+++++..++++ |+|++|+.+|.+ ..+.+.|+.+|+||+..
T Consensus 164 ~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T 1xm9_A 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243 (457)
T ss_dssp HHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------
T ss_pred HHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccc
Confidence 99999999999999999998 999999999953 45789999999999732
Q ss_pred -----------------------------cchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChH----H
Q 036199 577 -----------------------------EHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQ----Y 622 (710)
Q Consensus 577 -----------------------------~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~----~ 622 (710)
+++...+.+ .|+++.|+.+|.. .++..++.|+++|.+||.++.. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~ 322 (457)
T 1xm9_A 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp ----------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred ccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHH
Confidence 112223334 5678899999986 4799999999999999987632 2
Q ss_pred -HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 623 -CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 623 -~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+..+.++|++|+|+.|+.+++.++++.|.++|+.|....
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 334557899999999999999999999999999997743
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=1.2e-26 Score=264.54 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=228.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc--cCCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS--KNRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~--~~~~k~~i~ 465 (710)
..|.+++.+.|..|+..|+.++..++++|..|++.|+||.||.+|.+ ++..+|++|+.+|.|++. +..+|..++
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----PKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC----CCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 67888999999999999999999999999999999999999999988 789999999999999986 368899999
Q ss_pred cccchHHHHHHhccC-cH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc------------------CCCHHHH
Q 036199 466 NEDLFSLLASFLHSA-AA--TEETLAILVALSSYAYFISKIVASGALASILNMLD------------------SPNGKFQ 524 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~-~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~------------------~~~~~~~ 524 (710)
+.|+|+.||.+|.++ +. +++|+++|++||.++++|..|++ |+||+||++|. ..++.++
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 999999999999974 43 47999999999999999999995 57999999871 2357999
Q ss_pred HHHHHHHHHhccCcc-ccccccc-ccchhchHHhhc--------CchHHHHHHHHHHHHhcCcc----------------
Q 036199 525 ELAIKILHNLSSDVD-IQSHIAP-SEFLPKLVPFLK--------DATLAVSCLVILKNMCNTEH---------------- 578 (710)
Q Consensus 525 ~~A~~aL~nLs~~~e-n~~~iv~-aG~V~~Lv~lL~--------~~~~~~~al~iL~nLa~~~e---------------- 578 (710)
++|+++|+||+.+.+ ++..|++ .|+|++|+.+|. +...++.|+++|+||+..-+
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~ 289 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV 289 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccc
Confidence 999999999998764 5888887 466789999984 23579999999999997521
Q ss_pred ----------hHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCC----hHHHHHHHhCCchHHHHHHhhcCC
Q 036199 579 ----------ARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQR----DQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 579 ----------~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~----~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
|...+.+ .++|+.|+.+|.. .++.++|+|+++|.+||.+. ...+..+.++|++|.|+.|+.+++
T Consensus 290 ~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 290 ANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp ------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred cccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 1111222 3456778899964 68999999999999999876 234556677899999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 036199 644 DKAKVSALELRRLLRDVA 661 (710)
Q Consensus 644 ~~~k~kA~~LL~~l~~~~ 661 (710)
.++++.|.++|+.|....
T Consensus 369 ~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCh
Confidence 999999999999998764
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.93 E-value=3.6e-25 Score=248.16 Aligned_cols=268 Identities=16% Similarity=0.136 Sum_probs=229.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhh-ccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLR-DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~-s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+++.+.|..|++.|+.++.++++++..|++.|+||.|+++|. + ++.+++++|+.+|.|++.++.+|..+++
T Consensus 51 ~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~~ 126 (457)
T 1xm9_A 51 DLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELKEELIA 126 (457)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcCHHhHHHHHh
Confidence 6677889999999999999999988999999999999999999998 5 6899999999999999888888888888
Q ss_pred ccchHHHHHHhc--------cCcH----------HHHHHHHHHHhccCchhhHHHhhh-CcHHHHHHhhcC---------
Q 036199 467 EDLFSLLASFLH--------SAAA----------TEETLAILVALSSYAYFISKIVAS-GALASILNMLDS--------- 518 (710)
Q Consensus 467 ~gaI~~LV~lL~--------s~~~----------~~~Aa~~L~~Ls~~~~nk~~I~~~-GaI~~LV~LL~~--------- 518 (710)
|++|.|+.+|. ++.. .++|+++|+||+..++++..+.+. |++++|+.+|.+
T Consensus 127 -g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 205 (457)
T 1xm9_A 127 -DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD 205 (457)
T ss_dssp -HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC
T ss_pred -ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch
Confidence 99999999993 2211 138999999999889999999997 999999988853
Q ss_pred --------------------------------------------------------------------------------
Q 036199 519 -------------------------------------------------------------------------------- 518 (710)
Q Consensus 519 -------------------------------------------------------------------------------- 518 (710)
T Consensus 206 ~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 285 (457)
T 1xm9_A 206 KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI 285 (457)
T ss_dssp TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHH
T ss_pred HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchH
Confidence
Q ss_pred ----------CCHHHHHHHHHHHHHhccCccc------ccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchH
Q 036199 519 ----------PNGKFQELAIKILHNLSSDVDI------QSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR 580 (710)
Q Consensus 519 ----------~~~~~~~~A~~aL~nLs~~~en------~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r 580 (710)
.++..++.|+++|.||+..... +..+.++|++|.|+++|.+ .+++..|+++|.||+.+++.+
T Consensus 286 ~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence 1245667789999999875433 2233469999999999965 467999999999999999888
Q ss_pred HHHHhhcCChHHHHHHhhcCC------HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHH
Q 036199 581 VCVVETSGCLPSVAELLEIGS------EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALEL 653 (710)
Q Consensus 581 ~~i~~~~g~I~~Lv~lL~~~s------~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~L 653 (710)
..|.. |+|+.|+++|..++ +++...++++|.++...+++++..+.+.|++++|+.|+.++ +++++++|.++
T Consensus 366 ~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~ 443 (457)
T 1xm9_A 366 RVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443 (457)
T ss_dssp HHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 87765 68999999999864 36788999999999998888999999999999999999999 99999999999
Q ss_pred HHHhhhccC
Q 036199 654 RRLLRDVAY 662 (710)
Q Consensus 654 L~~l~~~~~ 662 (710)
|..+-.+++
T Consensus 444 L~~~~~~~~ 452 (457)
T 1xm9_A 444 LSDMWSSKE 452 (457)
T ss_dssp HHTTSSSTT
T ss_pred HHHHHcchh
Confidence 997665443
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=250.41 Aligned_cols=267 Identities=12% Similarity=0.089 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcH----------HHHHHHhhccccCCC----------HHHHHHHHHHHH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFV----------EPLIRFLRDARDLHD----------SRAQRIGCRLLL 452 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I----------~~LV~lL~s~~~~~d----------~~~q~~A~~~L~ 452 (710)
++.+.|.+|+++|..++..+++......+.|++ +.++++|.+.....| ...+.+|+.+|.
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 457899999999999999999888877788887 667777876321111 012348999999
Q ss_pred HHhccCCCCCccccccchHHHHHHhccC-----------c--HHHHHHHHHHHhccCch-hhHHHhh-hCcHHHHHHhhc
Q 036199 453 AFVSKNRSGIPYLNEDLFSLLASFLHSA-----------A--ATEETLAILVALSSYAY-FISKIVA-SGALASILNMLD 517 (710)
Q Consensus 453 nL~~~~~~k~~i~~~gaI~~LV~lL~s~-----------~--~~~~Aa~~L~~Ls~~~~-nk~~I~~-~GaI~~LV~LL~ 517 (710)
|++.++++|..+++.|++++|+.+|... + .+++|+++|.||+..++ +|..|.. .|+||+||.+|.
T Consensus 174 nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 174 KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 9988888999999999999999999521 1 13699999999997654 7777764 677999999999
Q ss_pred CCCHHHHHHHHHHHHHhccC--cccccccccccchhchHHhh-c--CchHHHHHHHHHHHHhc-CcchHHHHHhhcCChH
Q 036199 518 SPNGKFQELAIKILHNLSSD--VDIQSHIAPSEFLPKLVPFL-K--DATLAVSCLVILKNMCN-TEHARVCVVETSGCLP 591 (710)
Q Consensus 518 ~~~~~~~~~A~~aL~nLs~~--~en~~~iv~aG~V~~Lv~lL-~--~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~ 591 (710)
++++++++.|+++|.||+.. ++|+..++++|+||+|+++| . +..+.+.|+.+|+||+. +++++..|+...|+|+
T Consensus 254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333 (458)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence 99999999999999999984 57899999999999999985 3 35678999999999999 8899999984489999
Q ss_pred HHHHHhhcCCH----HHHHHHHHHHHHHhc---CChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 592 SVAELLEIGSE----EDQEHAVAILLCLCS---QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 592 ~Lv~lL~~~s~----~~ke~A~~aL~~Lc~---~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
.|+.+|..+++ ..+++|+++|.+|+. .++++++.+.+.|++|+|+.++.+++..+++.|.+.|..|..
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 99999998655 489999999999997 677899999999999999999999999999999999998874
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.92 E-value=2.8e-25 Score=240.53 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc--CCCCCccccccch
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK--NRSGIPYLNEDLF 470 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~--~~~k~~i~~~gaI 470 (710)
+.+.|..|++.|..++..+++++..+. ..|+||.||++|.+ ++.++|+.|+.+|.|++.. +.+|..+++.|+|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~I 172 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCH
Confidence 367899999999999999888998885 45679999999987 7899999999999999763 4678888899999
Q ss_pred HHHHHHh-ccCcH--HHHHHHHHHHhcc-CchhhHHHh-hhCcHHHHHHhhcCCCH----HHHHHHHHHHHHhcc----C
Q 036199 471 SLLASFL-HSAAA--TEETLAILVALSS-YAYFISKIV-ASGALASILNMLDSPNG----KFQELAIKILHNLSS----D 537 (710)
Q Consensus 471 ~~LV~lL-~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~-~~GaI~~LV~LL~~~~~----~~~~~A~~aL~nLs~----~ 537 (710)
|.||.+| ++++. .+.|+++|+||+. .+++|..|+ ..|+||+|+++|.+++. ++++.|+++|+||+. +
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 9999975 44543 4789999999998 778999999 79999999999987754 589999999999995 8
Q ss_pred cccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
++++..++++|+|++|+.+|.++ .+++.|+++|+||+. +++++..+++ .|+|+.|+++|.+++++.+++|+++|.+
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRN 331 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 89999999999999999999654 579999999999995 7899999998 8999999999999999999999999999
Q ss_pred HhcCChH
Q 036199 615 LCSQRDQ 621 (710)
Q Consensus 615 Lc~~~~~ 621 (710)
|+.+.+.
T Consensus 332 L~~~~~~ 338 (354)
T 3nmw_A 332 LMANRPA 338 (354)
T ss_dssp HHTTCCG
T ss_pred HHcCCHH
Confidence 9998754
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.91 E-value=7.7e-24 Score=241.52 Aligned_cols=265 Identities=15% Similarity=0.163 Sum_probs=218.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHcc-CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEH-DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~-~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+++.+.|..|+++|+.++.. ++++|..|++.|+|+.||++|.+. .+.++|++|+.+|.+|+.++.+|..|+
T Consensus 97 ~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~~~~~k~~I~- 172 (584)
T 3l6x_A 97 GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA---RDMDLTEVITGTLWNLSSHDSIKMEIV- 172 (584)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTTSGGGHHHHH-
T ss_pred HHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCCchhhHHHH-
Confidence 678889999999999999999985 789999999999999999999862 478899999999999988888888887
Q ss_pred ccchHHHHHHhc---cC-----------------cHHHHHHHHHHHhccCc-hhhHHHhh-hCcHHHHHHhhcC------
Q 036199 467 EDLFSLLASFLH---SA-----------------AATEETLAILVALSSYA-YFISKIVA-SGALASILNMLDS------ 518 (710)
Q Consensus 467 ~gaI~~LV~lL~---s~-----------------~~~~~Aa~~L~~Ls~~~-~nk~~I~~-~GaI~~LV~LL~~------ 518 (710)
.|+|+.|+++|. ++ ...++|+++|+||+... ++|..|++ .|+|++||.+|++
T Consensus 173 ~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~ 252 (584)
T 3l6x_A 173 DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKD 252 (584)
T ss_dssp HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccC
Confidence 468999999872 11 12368999999999765 45888886 4667788877642
Q ss_pred C--------------------------------------------------------------------CHHHHHHHHHH
Q 036199 519 P--------------------------------------------------------------------NGKFQELAIKI 530 (710)
Q Consensus 519 ~--------------------------------------------------------------------~~~~~~~A~~a 530 (710)
. ++.+++.|++|
T Consensus 253 ~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~A 332 (584)
T 3l6x_A 253 SDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA 332 (584)
T ss_dssp CSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHH
Confidence 1 23444555566
Q ss_pred HHHhccCc-----ccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC---
Q 036199 531 LHNLSSDV-----DIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG--- 600 (710)
Q Consensus 531 L~nLs~~~-----en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~--- 600 (710)
|.||+... .++..+.+.|++|.|+++|.. ..+...|+++|+||+.++.++..| . .|+|+.||.+|..+
T Consensus 333 L~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCS
T ss_pred HHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHhcCCccc
Confidence 66665432 122334557899999999954 567999999999999999999877 4 58999999999976
Q ss_pred -----CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHhh
Q 036199 601 -----SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLLR 658 (710)
Q Consensus 601 -----s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l~ 658 (710)
+.+....|+++|.+|+..++++++.+.+.|++|.|+.|+.++ ++++++.|..+|..|-
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999987 8999999999999774
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.91 E-value=3.4e-24 Score=252.08 Aligned_cols=269 Identities=13% Similarity=0.110 Sum_probs=233.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcc-----------------------------cc---hhcccCCcHHHHHHHhhcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQ-----------------------------VS---HSLSSTNFVEPLIRFLRDA 435 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~-----------------------------~r---~~I~~~G~I~~LV~lL~s~ 435 (710)
..|++.+...|..|++.|..++.+.+. ++ ..+++.|++|.|+.+|++
T Consensus 428 ~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s- 506 (810)
T 3now_A 428 DLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT- 506 (810)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-
T ss_pred HHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-
Confidence 556677888899999999999985421 22 567889999999999988
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHh---hhCcHH
Q 036199 436 RDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIV---ASGALA 510 (710)
Q Consensus 436 ~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~---~~GaI~ 510 (710)
+++.+|++|+++|.|++.+..++..+++.|++|+|+.+|.++.. +++|+++|.+|+........+. ..|+||
T Consensus 507 ---~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 507 ---ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIR 583 (810)
T ss_dssp ---CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHH
T ss_pred ---CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHH
Confidence 78999999999999998877788888999999999999998875 4799999999986544443332 257999
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhh
Q 036199 511 SILNMLDSP-NGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVET 586 (710)
Q Consensus 511 ~LV~LL~~~-~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~ 586 (710)
+|+.+|.++ +...+..|++||.||+.. ++++..++++|+++.|+.+|.+ +.++..|+.+|+||+.+++.+..++..
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~ 663 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSS
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhc
Confidence 999999866 455667899999999986 5788999999999999999954 578999999999999999999888854
Q ss_pred cCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHh-CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 587 SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN-EGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 587 ~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.|+++.|+.++...+...|+.|+++|.+|+.+++..++.+++ .|++++|+.|+.+++.+.|+.|.+.|..+...
T Consensus 664 ~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999977678888888 89999999999999999999999999887653
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=2.3e-23 Score=211.85 Aligned_cols=238 Identities=20% Similarity=0.244 Sum_probs=215.2
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccC-ch
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY-AY 498 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~ 498 (710)
|.|+.|+.+|.+ .+.++|..|+.+|.+++.+. .++..+++.|+++.|+.+|.+++.. ..|+++|.+|+.. ++
T Consensus 2 ~~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 679999999987 67999999999999997655 3667777899999999999988753 6999999999977 89
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLS-SDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs-~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
++..+.+.|+++.|+.+|.++++.++..|+++|.||+ .+++++..+++.|+++.|+++|.+ +.++..|+.+|.+|+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999 578889999999999999999965 4689999999999998
Q ss_pred C-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 036199 576 T-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654 (710)
Q Consensus 576 ~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL 654 (710)
. ++.+..+.+ .|+++.|+.+|.++++..++.|+++|.++|..++..+..+.+.|+++.|+.++.++++.+++.|.++|
T Consensus 158 ~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 5 445567777 89999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHhhhccCCcc
Q 036199 655 RLLRDVAYSVE 665 (710)
Q Consensus 655 ~~l~~~~~~~~ 665 (710)
..|........
T Consensus 237 ~~l~~~~~~~~ 247 (252)
T 4hxt_A 237 ENIKSGGWLEH 247 (252)
T ss_dssp HHHHHTCBCCC
T ss_pred HHHHcCCCccc
Confidence 99988765543
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.91 E-value=8.7e-24 Score=248.65 Aligned_cols=273 Identities=14% Similarity=0.134 Sum_probs=237.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcc---
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY--- 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i--- 464 (710)
..|.+++++.|.+|++.|..++. ++++|..+++.|++++|+.+|.+ ++...|++|+.+|.+++.+......+
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 66788899999999999999995 56799999999999999999987 67899999999999996533222211
Q ss_pred ccccchHHHHHHhccCcH---HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc
Q 036199 465 LNEDLFSLLASFLHSAAA---TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en 540 (710)
...|++|+|+.+|.++.. ...|+++|.||+.. ++++..|++.|++|.|+.+|.++++.+++.|+++|.||+.++++
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~ 656 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV 656 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH
Confidence 124799999999986633 24799999999976 68999999999999999999999999999999999999999999
Q ss_pred cccccc-ccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 541 QSHIAP-SEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 541 ~~~iv~-aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
+..++. .|+++.|+.++.. ..++..|+++|+||+. ++.....+++..|+|+.|+.+|.+++.+.|+.|+++|.+++
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888886 8999999999965 4679999999999999 77788888875699999999999999999999999999999
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcC---CHHHHHHHHHHHHHhhhccCCcc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYG---NDKAKVSALELRRLLRDVAYSVE 665 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~g---t~~~k~kA~~LL~~l~~~~~~~~ 665 (710)
..+.++...+.+.|++++|+.++... +.++.+.|...|+.+-++..-+.
T Consensus 737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 98888999999999999999997654 78999999999998877665443
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.91 E-value=1.5e-23 Score=239.16 Aligned_cols=268 Identities=13% Similarity=0.110 Sum_probs=235.9
Q ss_pred hhhc-CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccc
Q 036199 388 SRLT-ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYL 465 (710)
Q Consensus 388 ~~L~-s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~ 465 (710)
..|. +.+.+.|..|++.|..++..+++++..+++.|+||.|+.+|.+ ++..+++.|+.+|.|++.+ ..++..++
T Consensus 126 ~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s----~~~~v~e~A~~aL~nLa~~~~~~r~~i~ 201 (529)
T 3tpo_A 126 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGAGSAFRDLVI 201 (529)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4453 4468899999999999999999999999999999999999988 7899999999999999865 45677788
Q ss_pred cccchHHHHHHhccCcH-------HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA-------TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~-------~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~ 537 (710)
+.|+++.|+.+|..+.. ..+++++|.+++........+. ..|++|.|+.+|.+++++++.+|+++|.+|+.+
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 99999999999986542 2589999999998776555554 478999999999999999999999999999987
Q ss_pred cccc-cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQ-SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~-~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
++++ ..++.+|+++.|+.+|.+ ..++..|+.+|+||+. +++.+..+.+ .|+++.|+.+|.++++..++.|+++|.
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6554 556789999999999965 4678999999999987 4566777777 799999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+||.++......+.+.|++|+|+.++.+++.++++.|.+.|..+...
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999988999999999999999999999999999999999877643
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.91 E-value=2e-23 Score=237.24 Aligned_cols=270 Identities=15% Similarity=0.196 Sum_probs=232.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHc-cCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLE-HDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak-~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~ 465 (710)
..|.+++.+.|.+|+..+|.++. +.......|++.|+||.||++|++. .++.+|..|+++|.|+++ +..++..++
T Consensus 64 ~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~~~~vv 140 (510)
T 3ul1_B 64 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVV 140 (510)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 67889999999999999997664 3333456788999999999999762 568999999999999965 445677788
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPN-----GKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~~ 537 (710)
+.|+||.|+.+|.+++. ++.|+++|.||+.+ +.+|..+.+.|++++|+.+|...+ ......++++|.|++.+
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 220 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence 99999999999999876 47999999999965 678889999999999999997654 45788999999999998
Q ss_pred cccccccc-cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 538 VDIQSHIA-PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 538 ~en~~~iv-~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
..+...+. ..|++|.|+.+|.+ +++...|+++|.+|+.+...+..++...|+++.|+.+|.++++..+..|+.+|.+
T Consensus 221 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~n 300 (510)
T 3ul1_B 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300 (510)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHH
Confidence 77766654 47899999999954 5678999999999999766654444338999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 615 Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++..++.....+.+.|+++.|+.++.++++.+++.|.+.|..+...
T Consensus 301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999988999999999999999999999999999999999988643
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.90 E-value=1.2e-23 Score=238.85 Aligned_cols=268 Identities=13% Similarity=0.109 Sum_probs=234.7
Q ss_pred hhhc-CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLT-ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~-s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|. +.+.+.|..|++.|..++..+++++..+++.|+||.|+.+|.+ ++..+++.|+.+|.|++.+. ..+..+.
T Consensus 107 ~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 107 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4454 3468899999999999999999999999999999999999987 78999999999999998754 4567778
Q ss_pred cccchHHHHHHhccCcH-------HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA-------TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~-------~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~ 537 (710)
+.|+++.|+.+|.+++. ..+++++|.+++........+. ..|++|.|+.+|.+++++++..|+++|.+|+.+
T Consensus 183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 99999999999987642 2589999999998766655554 478999999999999999999999999999987
Q ss_pred cccc-cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQ-SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~-~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
++++ ..+++.|+++.|+.+|.+ ..++..++.+|+||+. +++.+..+.+ .|+++.|+.+|.++++..++.|+++|.
T Consensus 263 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 263 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6555 556789999999999965 4678999999999987 4566677777 799999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+|+.++..++..+.+.|++|.|+.++.+++.++|+.|.+.|..+...
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 99999988999999999999999999999999999999999877653
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=4.1e-23 Score=211.10 Aligned_cols=233 Identities=22% Similarity=0.291 Sum_probs=209.4
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhcc-Cc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSS-YA 497 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~~ 497 (710)
....+.++..|.+ +|+++|..|+.+|.++.. ++.++..+++.|+++.|+.+|.+++. +..|+++|.+|+. .+
T Consensus 11 ~~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4568999999988 789999999999988643 45556667789999999999998875 3699999999996 78
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-cccccccchhchHHhhcC--chHHHHHHHHHHHHh
Q 036199 498 YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMC 574 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa 574 (710)
+++..+.+.|+++.|+.+|.++++.++..|+++|.||+.+++++ ..+++.|+++.|+++|.+ ..++..|+.+|.+|+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 889999999999999965 467999999999999
Q ss_pred cC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 036199 575 NT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALEL 653 (710)
Q Consensus 575 ~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~L 653 (710)
.. ++.+..+.+ .|+++.|+.+|..+++..++.|+++|.+||..++..+..+.+.|+++.|+.++.++++++++.|.++
T Consensus 167 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 167 SGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp TSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred cCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 84 566667777 7999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHhhh
Q 036199 654 RRLLRD 659 (710)
Q Consensus 654 L~~l~~ 659 (710)
|..|..
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 987754
No 16
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=216.70 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=169.4
Q ss_pred CcHHHHHHHhhccccCCCH--HHHHHHHHHHHHHh-ccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhcc-C
Q 036199 423 NFVEPLIRFLRDARDLHDS--RAQRIGCRLLLAFV-SKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSS-Y 496 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~--~~q~~A~~~L~nL~-~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~ 496 (710)
-.++.||++|.+ +|. ++|..|+..|.+++ .++.+|..+.+.|+||.||.+|++++. ++.|+++|.||+. +
T Consensus 8 ~~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 8 MTLERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CCHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 368999999988 455 89999999999996 466778888899999999999999875 4799999999996 6
Q ss_pred chhhHHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc-----------------
Q 036199 497 AYFISKIVASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK----------------- 558 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~----------------- 558 (710)
++||..|++.|+||+||++|. +++.++++.|+.+|||||..++||..+++ ++||+|+.++.
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 899999999999999999997 68999999999999999999999999987 57999998762
Q ss_pred -CchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcC------CHHHHHHHHHHHHHHhcC
Q 036199 559 -DATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIG------SEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 559 -~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~------s~~~ke~A~~aL~~Lc~~ 618 (710)
+.++.+.|.++|+||+. ++++|..|.+..|+|+.||.+++.+ +.+.+|+|+.+|++||.+
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 23678999999999998 5799999998678899999999863 668899999999999975
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.90 E-value=2.1e-22 Score=229.76 Aligned_cols=269 Identities=15% Similarity=0.202 Sum_probs=232.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHc-cCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLE-HDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak-~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..+.+++.+.|..|+..+|.+.. +.......+++.|+||.||++|... .++.+|..|+.+|.|++.+. .++..++
T Consensus 83 ~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 83 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67788899999999999997664 3334456788999999999999752 56899999999999997644 4556778
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSS-YAYFISKIVASGALASILNMLDSPN-----GKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~~ 537 (710)
+.|+||.|+.+|.+++. ++.|+++|.||+. .++++..+.+.|++++|+.+|...+ ......++++|.|++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999886 3799999999996 4689999999999999999997654 45688999999999998
Q ss_pred cccccccc-cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHH-HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQSHIA-PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARV-CVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~~~iv-~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~-~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
..+...+. ..|++|.|+.+|.+ +++...|+++|.+|+.+.+.+. .+.. .|+++.|+.+|.++++..+..|+.+|.
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 77766554 47899999999954 5678999999999999766554 4555 899999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+++.+++.....+.+.|+++.|+.++.++++.+++.|.+.|..+...
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 99999988999999999999999999999999999999999988653
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=8.4e-22 Score=223.87 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=235.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCc-ccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDN-QVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~-~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~ 465 (710)
..|.+++++.|..|+..|+.++.... .....+...|+++.|+.+|.+. .++.+|..|+.+|.+++.+ ..++..++
T Consensus 81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 157 (528)
T 4b8j_A 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVI 157 (528)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 67788899999999999999877654 6677888999999999999872 2389999999999999774 45566777
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
+.|+++.|+.+|.+++. ++.|+++|.+|+.. +.++..+...|++++|+.+| .+.++.++..|+++|.||+.+..+.
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~ 237 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP 237 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 88999999999998775 37999999999955 66888999999999999999 6778999999999999999886666
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
...+..|+++.|+.+|.+ +.+...|+.+|.+|+.....+ ..+.. .|+++.|+.+|.++++..++.|+++|.+|+.+
T Consensus 238 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 238 SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC
Confidence 666779999999999954 568999999999999976665 45556 79999999999999999999999999999999
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHhhh
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLLRD 659 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~LL~~l~~ 659 (710)
++...+.+++.|+++.|+.++.++ ++.+++.|.++|..|..
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 888889999999999999999999 99999999999998875
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.88 E-value=7.6e-23 Score=209.12 Aligned_cols=226 Identities=20% Similarity=0.258 Sum_probs=201.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
..|.+++.+.|..|++.|+.++..+++++..+.+.|+++.|+.+|.+ .+..++..|+.+|.+++. +..++..+++
T Consensus 19 ~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 19 QQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 67888999999999999987666677888899999999999999987 679999999999999976 5566777788
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccCchhh-HHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ccccc
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSYAYFI-SKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk-~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~ 542 (710)
.|+++.|+.+|++++. ++.|+++|.+|+..+.++ ..+.+.|++|.|+++|.++++.++..|+++|.||+.. ++++.
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999875 379999999999999988 8888999999999999999999999999999999974 56777
Q ss_pred ccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 543 HIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
.+++.|+++.|+.+|.+ +.++..|+.+|.+|+. +++.+..+.+ .|+++.|+.++.++++..++.|+++|.+|+.+
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 88899999999999965 4679999999999996 5677778887 79999999999999999999999999999853
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.88 E-value=1.3e-21 Score=222.38 Aligned_cols=268 Identities=14% Similarity=0.117 Sum_probs=235.9
Q ss_pred hhhcCCC-HHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTELN-WDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~-~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+.+ ++.|..|++.|..++.++++++..+.+.|+++.|+.+|.+ .+..+++.|+.+|.+++.+. .++..+.
T Consensus 124 ~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~i~ 199 (528)
T 4b8j_A 124 QFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSPKCRDLVL 199 (528)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 5566665 8999999999999999989999999999999999999987 68999999999999997653 4466677
Q ss_pred cccchHHHHHHhc-cCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-
Q 036199 466 NEDLFSLLASFLH-SAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ- 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~-s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~- 541 (710)
..|+++.|+.+|. +.+. ...|+++|.+|+....+.......|++|.|+.+|.++++.++..|+++|.+|+...++.
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 279 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI 279 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999994 4443 36999999999987655556667999999999999999999999999999999876655
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLCS 617 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~ 617 (710)
..+++.|+++.|+.+|.+ +.++..|+.+|+||+. .+.....+.+ .|+++.|+.+|.++ ++..++.|+++|.+|+.
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 567789999999999965 4689999999999998 5666677777 79999999999998 99999999999999999
Q ss_pred CChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 618 QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 618 ~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.++.....+.+.|++|.|+.++.++++.+++.|.++|..+...
T Consensus 359 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 359 GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 8888888999999999999999999999999999999988765
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.87 E-value=7.5e-22 Score=200.59 Aligned_cols=227 Identities=20% Similarity=0.231 Sum_probs=205.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~ 466 (710)
..|.+.+.+.|..|++.|..++..+++++..+.+.|+++.|+.+|.+ .+..++..|+.+|.+++.+ ..++..+.+
T Consensus 9 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 9 KLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56777889999999999999999998899999999999999999987 6799999999999999765 566777788
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~ 542 (710)
.|+++.|+.+|++++.. ..|+++|.+|+ ..++++..+.+.|+++.|+++|.++++.++..|+++|.||+.. ++++.
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 164 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999987753 69999999999 6788999999999999999999999999999999999999984 55567
Q ss_pred ccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 543 HIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+++.|+++.|+.+|.+ +.++..|+.+|.+|+. +++.+..+.+ .|+++.|++++.++++..++.|+++|.+|+...
T Consensus 165 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 88899999999999965 4789999999999998 5666777777 899999999999999999999999999999876
No 22
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=201.08 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=170.1
Q ss_pred cchHHHHHHhccCcH--H--HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Ccccc
Q 036199 468 DLFSLLASFLHSAAA--T--EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQ 541 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~--~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~ 541 (710)
-.+|.||++|.+++. . ..|+++|.+|+ .++++|..|.+.|+||+||.+|.++++++++.|+++|.||+. +++|+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999998875 3 48899999999 578899999999999999999999999999999999999998 68999
Q ss_pred cccccccchhchHHhhc---CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh---c-------------CCH
Q 036199 542 SHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE---I-------------GSE 602 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~---~-------------~s~ 602 (710)
..++++|+||+|+++|. +.++++.|+++|+||+.++++|..|++ ++|+.|+.++. . .++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999995 346899999999999999999999987 36999998763 1 266
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhC-CchHHHHHHhhcC------CHHHHHHHHHHHHHhhhcc
Q 036199 603 EDQEHAVAILLCLCSQRDQYCKLVMNE-GVIPSLVKISVYG------NDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 603 ~~ke~A~~aL~~Lc~~~~~~~~~v~~~-G~v~~Lv~L~~~g------t~~~k~kA~~LL~~l~~~~ 661 (710)
.++++|.++|.+|++.++++++.+.+. |+|+.|+.+++.+ +++.+|.|..+|+.|..+-
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 999999999999999888899999876 7789999997764 5688999999999998653
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=9e-21 Score=215.72 Aligned_cols=268 Identities=17% Similarity=0.183 Sum_probs=234.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+++++.|..|+..|+.++... ..++..+.+.|+++.|+.+|.+. .++.+|..|+.+|.+++.+. ..+..++
T Consensus 94 ~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 170 (530)
T 1wa5_B 94 QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVV 170 (530)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6778889999999999999987643 45566778899999999999872 27999999999999997643 3445566
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~ 541 (710)
..|+++.|+.+|.+++. ++.|+++|.+|+.. +.++..+...|++++|+.+|.+.++.++..|+++|.||+.+. .+.
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 88999999999998765 37999999999965 678888889999999999999999999999999999999876 666
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
......|+++.|+.+|.+ +.+...|+++|.+|+.. ++....+.+ .|+++.|+.+|..+++..++.|+++|.+++.+
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence 667779999999999965 46789999999999985 556677777 79999999999999999999999999999999
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
++...+.+.+.|+++.|+.++.+++...++.|.+.|..+..
T Consensus 330 ~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88888889999999999999999999999999999998875
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=9.1e-21 Score=215.70 Aligned_cols=268 Identities=15% Similarity=0.088 Sum_probs=234.9
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+. +++.|..|++.|..++..+++++..+...|+++.|+.+|.+ .+..+++.|+.+|.+++.+. .++..+.
T Consensus 137 ~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 137 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 556665 78999999999999999888889899999999999999987 78999999999999997653 4555667
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~ 541 (710)
..|+++.|+.+|.+++. ...|+++|.+|+... .........|++|.|+.+|.++++.++..|+++|.+|+.. ++..
T Consensus 213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 292 (530)
T 1wa5_B 213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292 (530)
T ss_dssp HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 78999999999998664 368999999999765 5555666789999999999999999999999999999975 4566
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
..+++.|+++.|+.+|.+ ..++..|+.+|.+|+.. ++....+.+ .|+++.|+.+|.++++..++.|+++|.+++..
T Consensus 293 ~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 293 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 778889999999999965 46789999999999975 555666676 79999999999999999999999999999998
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++...+.+++.|+++.|+.++.+++++++..|.+.|..|...
T Consensus 372 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 878888888999999999999999999999999999988654
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.85 E-value=7.4e-20 Score=202.23 Aligned_cols=268 Identities=14% Similarity=0.150 Sum_probs=232.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC--CCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN--RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~--~~k~~i~ 465 (710)
..|.+.+++.+..|++.|..++..+++++..+.+.|+++.|+.+|.+. .+..+++.|+.+|.+++.+. ..+..+
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 189 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAK- 189 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSSSCCCGGG-
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHhCCCCCCCCHHH-
Confidence 556677899999999999999999888999999999999999999852 57899999999999997643 333333
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc-c
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI-Q 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en-~ 541 (710)
-.|+++.|+.+|.+++.. ..|+++|.+|+.. ++++..+...|+++.|+.+|.++++.++..|+.+|.+|+...++ .
T Consensus 190 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 190 VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence 389999999999987753 6899999999975 46777788899999999999999999999999999999986554 4
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
..+++.|+++.|+.+|.+ +.++..|+.+|.+|+. +++....+.+ .|+++.|+.+|..+++..+..|+++|.+++..
T Consensus 270 ~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 270 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 557789999999999965 4679999999999997 6677777777 79999999999999999999999999999986
Q ss_pred -ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 619 -RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 -~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+++..+.+.+.|+++.|+.++.++++++++.|...|..|...
T Consensus 349 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 566777788999999999999999999999999998877654
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.85 E-value=4.2e-20 Score=204.17 Aligned_cols=267 Identities=14% Similarity=0.068 Sum_probs=230.3
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+. +.+.|..|++.|..++..++++...+.+.|+++.|+.+|.+ .++.+++.|+.+|.+++.+. ..+..++
T Consensus 71 ~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 71 EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 556666 78999999999999999888888888889999999999987 68999999999999997654 4455566
Q ss_pred cccchHHHHHHhcc-CcH--HHHHHHHHHHhccCc--hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cc
Q 036199 466 NEDLFSLLASFLHS-AAA--TEETLAILVALSSYA--YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VD 539 (710)
Q Consensus 466 ~~gaI~~LV~lL~s-~~~--~~~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~e 539 (710)
+.|+++.|+.+|.+ .+. +..|+++|.+|+... ..+..+. .|++|.|+.+|.++++.++..|+++|.+|+.+ ++
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 225 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND 225 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH
Confidence 78999999999985 343 469999999999653 3333333 89999999999999999999999999999985 46
Q ss_pred cccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcch-HHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 540 IQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA-RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~-r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
++..++..|+++.|+.+|.+ ..++..|+.+|.+|+.+.+. +..+.+ .|+++.|+.+|.++++..++.|+++|.+++
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67778889999999999965 46799999999999986544 455666 799999999999999999999999999999
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+++...+.+.+.|+++.|+.++.++++++|..|.+.|..+...
T Consensus 305 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 98878888899999999999999999999999999999988653
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.85 E-value=1.5e-20 Score=212.38 Aligned_cols=268 Identities=17% Similarity=0.175 Sum_probs=224.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+.+...|..|+..|..++..++ ++..+. ..|+++.|+++|.++ .+..+++.|+.+|.+++.+..++..+.+
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 99 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHREGLLAIFK 99 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 56677889999999999999997654 555554 569999999999762 4899999999999999876667778888
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
.|+++.|+.+|++++.. ..|+++|.+|+.. +.++..+.+.|++|.|+++|.+++.+.+..++.+|.+|+. +++++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999988753 6999999999965 5678888899999999999999999999999999999997 578888
Q ss_pred ccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHH--------------------------
Q 036199 543 HIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSV-------------------------- 593 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~L-------------------------- 593 (710)
.+++.|+++.|+.+|.+ ......++.+|.+|+.+++++..+.+ .|+++.|
T Consensus 180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 88888999999998853 24567788888999888888888776 5655554
Q ss_pred -------------HHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHhh
Q 036199 594 -------------AELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLLR 658 (710)
Q Consensus 594 -------------v~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l~ 658 (710)
+++|...++..++.|+++|.+|+.++++++..+.+.|+++.|+.++.+. ++.+++.|...|..|.
T Consensus 259 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4555556788888999999999998888999999999999999998763 3789999999999886
Q ss_pred hc
Q 036199 659 DV 660 (710)
Q Consensus 659 ~~ 660 (710)
..
T Consensus 339 ~~ 340 (529)
T 1jdh_A 339 SR 340 (529)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 28
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=3.3e-20 Score=184.33 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=174.6
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Ccccc
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~ 541 (710)
..|..+.|+.+|.+++.. ..|+++|.+|+ ..++++..+.+.|++|.|+.+|.++++.++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 568899999999988763 69999999999 677889999999999999999999999999999999999995 67888
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
..+++.|+|+.|+.+|.+ +.++..|+++|.||+. .++.+..+.+ .|+++.|+.+|.++++..++.|+++|.++|..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999965 4679999999999997 5566677777 79999999999999999999999999999999
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
++..+..+.+.|+++.|+.++.++++.+++.|.++|..|..
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999998864
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=219.08 Aligned_cols=267 Identities=17% Similarity=0.169 Sum_probs=229.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+.+..+|..|+..|..++..+. ++..+. ..|+++.|+++|.+. .+.++++.|+.+|.+++.+..++..+.+
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 96 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHREGLLAIFK 96 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 56677889999999999999998765 565555 459999999999862 4899999999999999876667788888
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
.|+++.|+.+|++++. +..|+++|.+|+.. +..+..+.+.|+||.|+++|.+++++.+..++.+|.+|+. +++++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 176 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 9999999999998875 36999999999965 5677788889999999999999999999999999999996 788999
Q ss_pred ccccccchhchHHhhcCc---hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHH------------------------
Q 036199 543 HIAPSEFLPKLVPFLKDA---TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAE------------------------ 595 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~---~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~------------------------ 595 (710)
.+++.|+++.|+.+|.+. .....++.+|.+|+.+++++..+++ .|+++.|+.
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999653 4678899999999999999999887 676666654
Q ss_pred ---------------HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC-C-HHHHHHHHHHHHHhh
Q 036199 596 ---------------LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG-N-DKAKVSALELRRLLR 658 (710)
Q Consensus 596 ---------------lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g-t-~~~k~kA~~LL~~l~ 658 (710)
+|..+++..++.|+++|.+|+.+++.++..+.+.|+++.|+.++.+. + +.+++.|...|..|.
T Consensus 256 ~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 256 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp TTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 44556788888999999999998888899999999999999998764 3 799999999999886
Q ss_pred h
Q 036199 659 D 659 (710)
Q Consensus 659 ~ 659 (710)
.
T Consensus 336 ~ 336 (644)
T 2z6h_A 336 S 336 (644)
T ss_dssp S
T ss_pred c
Confidence 4
No 30
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.84 E-value=7.6e-22 Score=169.06 Aligned_cols=74 Identities=28% Similarity=0.403 Sum_probs=69.5
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++....|+||..|+++|+.|+..|+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999999999984 6899999999999999999999999999999875
No 31
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.84 E-value=3.1e-21 Score=169.53 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=71.2
Q ss_pred cCCCCCcccccCCccccCCceecCCC-CccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCCC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESG-QTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSS 338 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G-~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~~ 338 (710)
...+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++....|+||+.|+++|+.|+..++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 45689999999999999999999999 99999999999985 679999999999999999999999999999998753
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.84 E-value=2.2e-21 Score=171.11 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=70.5
Q ss_pred ccCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 261 SRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 261 ~~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
....+|++|.||||+++|+|||+++|||||||.||++||. ++.+||.|++++....|+||..|+++|+.|+..|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999999999999998 57899999999999999999999999999999886
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.83 E-value=7e-20 Score=206.92 Aligned_cols=266 Identities=17% Similarity=0.133 Sum_probs=230.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
..|.+.+.+.|..|++.|..++..++.++..+.+.|+++.|+.+|.+ .+.+++..++.+|.+++. ++.++..+.+
T Consensus 108 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~~~~~~i~~ 183 (529)
T 1jdh_A 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILA 183 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55677788999999999999999888888889999999999999987 678999999999999975 4566777778
Q ss_pred ccchHHHHHHhccCcHH---HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAAT---EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~---~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
.|+++.|+.+|++++.. ..++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..|+++|.||+......
T Consensus 184 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-- 261 (529)
T 1jdh_A 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-- 261 (529)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--
T ss_pred CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--
Confidence 89999999999977642 4788999999999999999999999999999999999999999999999999765432
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcC
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~ 618 (710)
....|++|.|+++|.+ +++...|+++|++|+.+ ++++..+.+ .|+++.|+++|.. .++..++.|+.+|.+|+.+
T Consensus 262 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 2346899999999954 57899999999999985 568888888 7999999999986 3489999999999999987
Q ss_pred ChH---HHHHHHhCCchHHHHHHhhcCC-HHHHHHHHHHHHHhhhc
Q 036199 619 RDQ---YCKLVMNEGVIPSLVKISVYGN-DKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~---~~~~v~~~G~v~~Lv~L~~~gt-~~~k~kA~~LL~~l~~~ 660 (710)
++. .+..+.+.|+++.|+.++.+++ +..++.|.++|..+...
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 533 5778999999999999998886 58999999999887653
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.82 E-value=7.9e-20 Score=181.54 Aligned_cols=193 Identities=22% Similarity=0.284 Sum_probs=170.3
Q ss_pred cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhc-cC
Q 036199 421 STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALS-SY 496 (710)
Q Consensus 421 ~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~ 496 (710)
..|+.+.|+.+|.+ .|..+|..|+.+|.+++. +..++..+++.|+++.|+.+|++++.. +.|+++|.+|+ .+
T Consensus 10 ~~~~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 10 HGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ---CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccchhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 46889999999987 789999999999999974 455566778899999999999988753 69999999999 57
Q ss_pred chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC--chHHHHHHHHHHHH
Q 036199 497 AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNM 573 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nL 573 (710)
++++..+.+.|++|.|+.+|.++++.++..|+++|.||+. +++++..+++.|+++.|+++|.+ ..++..|+.+|.||
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999996 45666788899999999999965 46799999999999
Q ss_pred hcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 574 CNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 574 a~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
+.. ++.+..+.+ .|+++.|+.++.++++..++.|+++|.+||.+
T Consensus 166 ~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 166 ASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 996 777888887 79999999999999999999999999999853
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=208.23 Aligned_cols=266 Identities=17% Similarity=0.135 Sum_probs=229.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
..|.+.+.+.|..|++.|..++...+..+..+.+.|+++.|+.+|.+ .+.+.+..++.+|.+++. +..++..+.+
T Consensus 105 ~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~~i~~ 180 (644)
T 2z6h_A 105 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILA 180 (644)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 55677788999999999999999888888888999999999999987 578888888999999975 5667777888
Q ss_pred ccchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
.|+++.|+.+|.++.. ...++.+|.+|+..+.++..+.+.|+++.|+.++.+++...+..|+++|.||+..... .
T Consensus 181 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~ 258 (644)
T 2z6h_A 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--Q 258 (644)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT--C
T ss_pred cCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh--h
Confidence 9999999999998763 2579999999999999999999999999999999999999999999999999975433 2
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhc-CC-HHHHHHHHHHHHHHhcC
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEI-GS-EEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~-~s-~~~ke~A~~aL~~Lc~~ 618 (710)
....|+++.|+.+|.+ +.+++.|+++|.+|+.+ ++++..+.+ .|+++.|+.+|.. ++ +..++.|+.+|.+|+..
T Consensus 259 ~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 3345899999999954 56799999999999985 577888888 7999999999986 33 89999999999999986
Q ss_pred Ch---HHHHHHHhCCchHHHHHHhhcCC-HHHHHHHHHHHHHhhhc
Q 036199 619 RD---QYCKLVMNEGVIPSLVKISVYGN-DKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~---~~~~~v~~~G~v~~Lv~L~~~gt-~~~k~kA~~LL~~l~~~ 660 (710)
.+ ..+..+.+.|+++.|+.++.+.+ ...++.|.++|..|...
T Consensus 338 ~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp STTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred CchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 53 34566889999999999998875 68999999999887653
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.81 E-value=1.1e-20 Score=182.81 Aligned_cols=76 Identities=29% Similarity=0.408 Sum_probs=71.3
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSS 338 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~~ 338 (710)
..+|++|+||||+++|+|||+++|||||||.||++||..++.+||.|++++....|+||+.|+++|+.|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 4579999999999999999999999999999999999875558999999999999999999999999999999864
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.81 E-value=2.7e-19 Score=213.27 Aligned_cols=261 Identities=18% Similarity=0.170 Sum_probs=219.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc-
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN- 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~- 466 (710)
..|.+++.+.+..++..|+.. ++..+. .|+++.|+.+|.+ .+..+|+.|+.+|.+++.+..++..+..
T Consensus 122 ~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~----~d~~vr~~A~~~L~~L~~~~~~~~~i~~~ 190 (780)
T 2z6g_A 122 QRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRS 190 (780)
T ss_dssp ----CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred HHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCC----CCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence 667777778888888877743 333444 8999999999986 7899999999999999876555555554
Q ss_pred ccchHHHHHHhccC-cH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-cccc
Q 036199 467 EDLFSLLASFLHSA-AA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~-~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~ 542 (710)
.|+++.|+.+|.++ +. +.+|+.+|.+|+..++++..|++.|+|+.|+++|.++++.++..|+++|.||+.+. +++.
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 58999999999865 33 46999999999999999999999999999999999999999999999999999864 5566
Q ss_pred ccccccchhchHHhhcCc--hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCH-HHHHHHHHHHHHHhcC
Q 036199 543 HIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSE-EDQEHAVAILLCLCSQ 618 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~-~~ke~A~~aL~~Lc~~ 618 (710)
.+++.|+|+.|+.+|.++ .+...++.+|.+|+. +++++..+++ .|+++.|+.+|+.+++ ..++.|+.+|++||..
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 667899999999999654 567888899999996 6899999998 6999999999998654 4567899999999976
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
. .++..+++.|+++.|+.++.+++...++.|.+.|..|....
T Consensus 350 ~-~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 350 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp T-THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred h-HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 5 78899999999999999999999999999999999887554
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.80 E-value=9.7e-19 Score=208.44 Aligned_cols=265 Identities=15% Similarity=0.177 Sum_probs=226.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~ 466 (710)
..|.+.+.+.+..|++.|..++..... .....++++.|+.+|.+ .+..+++.|+.+|.+++.+. .++..+.+
T Consensus 367 ~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~----~d~~vr~~A~~aL~~L~~~~~~~~~~i~~ 439 (780)
T 2z6g_A 367 LHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQ 439 (780)
T ss_dssp GGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred HHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456667788899999999999876543 23346899999999987 78999999999999997643 45666778
Q ss_pred ccchHHHHHHhccC-c---HHHHHHHHHHHhccCc-h---hhHHHhhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhccC
Q 036199 467 EDLFSLLASFLHSA-A---ATEETLAILVALSSYA-Y---FISKIVASGALASILNMLDSPN-GKFQELAIKILHNLSSD 537 (710)
Q Consensus 467 ~gaI~~LV~lL~s~-~---~~~~Aa~~L~~Ls~~~-~---nk~~I~~~GaI~~LV~LL~~~~-~~~~~~A~~aL~nLs~~ 537 (710)
.|+++.|+.+|.+. . ....|+.+|.+|+... + .+..+...|+++.|+++|.+++ ..+++.|+++|.||+.+
T Consensus 440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 99999999999752 2 3479999999998643 2 3567888999999999998877 49999999999999999
Q ss_pred cccccccccccchhchHHhhcCc------------------------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA------------------------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSV 593 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~------------------------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~L 593 (710)
++++..+++.|+|+.|+.+|.++ ++.+.++.+|++|+..++++..+.+ .|+|+.|
T Consensus 520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~-~~~i~~L 598 (780)
T 2z6g_A 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG-LNTIPLF 598 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHH-CCcHHHH
Confidence 99998889999999999999432 3567899999999999999988888 7999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 594 AELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 594 v~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+.+|..+++.++..|+.+|.+|+.. +..+..+.+.|+++.|+.++.+.++.+|+.|.+.|..+....
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999855 578899999999999999999999999999999998777644
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-18 Score=202.23 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=205.0
Q ss_pred cchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCc-----HHHHHHHH
Q 036199 415 VSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAA-----ATEETLAI 489 (710)
Q Consensus 415 ~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~-----~~~~Aa~~ 489 (710)
++..+.+.|+|+.|+.++++ .++.+|+.|+.+|.+++.+..+|..+++.|++++|+.+|.++. .+++|+.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 66788999999999999988 7899999999999999999889999999999999999998875 24699999
Q ss_pred HHHhccCchhhHHHhh---hCcHHHHHHhhcC--CCH------------HHHHHHHHHHHHhccCccc-----ccccccc
Q 036199 490 LVALSSYAYFISKIVA---SGALASILNMLDS--PNG------------KFQELAIKILHNLSSDVDI-----QSHIAPS 547 (710)
Q Consensus 490 L~~Ls~~~~nk~~I~~---~GaI~~LV~LL~~--~~~------------~~~~~A~~aL~nLs~~~en-----~~~iv~a 547 (710)
|.+|....+....+.. .|+||+|++||.. +.. -.+..|+.||.||+..++| +..|++.
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 9999866665555532 4999999999973 211 2377999999999998744 7778885
Q ss_pred -cchhchHHhhcC--chHHHHHHHHHHHHhcCcchH-HHHHhh-----cCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 548 -EFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR-VCVVET-----SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 548 -G~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r-~~i~~~-----~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
|+++.|..+|.+ ..++..|+.++.||+.+++++ ..+... .+.++.||.++..++.+.|+.|+++|.++++.
T Consensus 605 ~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 605 KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999964 367999999999999999886 355431 12488999999999999999999999999887
Q ss_pred ChHHHHHHHhC-CchHHHHHHhhc--CCHHHHHHHHHHHHHhhhc
Q 036199 619 RDQYCKLVMNE-GVIPSLVKISVY--GNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~~~~~v~~~-G~v~~Lv~L~~~--gt~~~k~kA~~LL~~l~~~ 660 (710)
.+..++.+++. |+++.|+.++.+ .++..+.++..++..|-..
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 77777888877 899999999999 8999999999999988864
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.76 E-value=3.4e-19 Score=149.98 Aligned_cols=75 Identities=48% Similarity=0.943 Sum_probs=71.5
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
..+|++|.||||+++|.|||+++|||+||+.||++|+..|+.+||.|++++....++||+.|+++|+.|..+|++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999999998889999999999999999999999999999999986
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.75 E-value=1e-17 Score=176.83 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=160.7
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhc-C-
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILN-MLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLK-D- 559 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~-LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~-~- 559 (710)
..|+..|.+|+.+.+|...+...|++|+||. +|.++++.++..|+++|.|++.+ +.++..+++.|++|+|+.+|. +
T Consensus 58 ~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~ 137 (296)
T 1xqr_A 58 EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA 137 (296)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 5788999999998899999999999999999 99999999999999999999975 567788999999999999995 2
Q ss_pred -chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHH
Q 036199 560 -ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637 (710)
Q Consensus 560 -~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~ 637 (710)
..+.+.|+++|.||+. ++.+...+.. .|+++.|+.+|.++++..+..|+++|.+|+.++++.+..+++.|++++|+.
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 4679999999999997 4666778887 799999999999999999999999999999998889999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhhhc
Q 036199 638 ISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 638 L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
|+.+.+..+++.|...|..+...
T Consensus 217 LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999866544
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.6e-17 Score=190.62 Aligned_cols=267 Identities=14% Similarity=0.140 Sum_probs=212.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-------
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR------- 459 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~------- 459 (710)
..|...+.+.+.-|++.|..+..+ ++.|..+++ .|+++.|+.+|++. .+..+...++.+|.|+.....
T Consensus 341 ~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 341 NAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 445555667788999999998764 567777765 68899999999852 567788899999999964221
Q ss_pred --------------------------------CCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh
Q 036199 460 --------------------------------SGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA 505 (710)
Q Consensus 460 --------------------------------~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~ 505 (710)
++..+.+.|+||.|+.++++++. ++.|+++|.+|+.+.++|..+++
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq 496 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ 496 (778)
T ss_dssp ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23456789999999999998875 47999999999999999999999
Q ss_pred hCcHHHHHHhhcCCCHH---HHHHHHHHHHHhccCcccccccc--c-ccchhchHHhhcC-ch--------------H-H
Q 036199 506 SGALASILNMLDSPNGK---FQELAIKILHNLSSDVDIQSHIA--P-SEFLPKLVPFLKD-AT--------------L-A 563 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~---~~~~A~~aL~nLs~~~en~~~iv--~-aG~V~~Lv~lL~~-~~--------------~-~ 563 (710)
.|++++|+.+|.+++.. ++..|+.||.+|+...+....+- . .|+|++|+.+|.. +. + .
T Consensus 497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~ 576 (778)
T 3opb_A 497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN 576 (778)
T ss_dssp TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence 99999999999888654 89999999999997554333221 1 4999999999962 22 2 5
Q ss_pred HHHHHHHHHHhcCc-----chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC------ch
Q 036199 564 VSCLVILKNMCNTE-----HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG------VI 632 (710)
Q Consensus 564 ~~al~iL~nLa~~~-----e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G------~v 632 (710)
-.|+.+|.|||..+ +.|..|+.+.|+++.|+.+|.+++...|+.|++++.+|+.+.....+.+...+ .+
T Consensus 577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccH
Confidence 68999999999976 34777887448999999999999999999999999999986632112333222 37
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 633 PSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 633 ~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
++|+.|+..++.+.|+.|.++|.++.
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999999884
No 43
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.74 E-value=1e-18 Score=182.56 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=72.5
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCCC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSS 338 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~~ 338 (710)
...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|+++++...++||..|+++|+.|+..||+.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 35689999999999999999999999999999999999987778999999999999999999999999999999864
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-19 Score=152.83 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=64.9
Q ss_pred CCCcccccCCccccCCceecC-CCCccchhhHHHHhhhC-----CCCCCCCCCc---cCCCCCcccHHHHHHHHHHHHHc
Q 036199 265 IPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEEG-----NHTCPKTKMK---LVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~g-----~~~cP~t~~~---l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+|+.+ +....|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 478999999999999999996 99999999999999853 4689996655 88889999999999999999887
Q ss_pred C
Q 036199 336 C 336 (710)
Q Consensus 336 ~ 336 (710)
+
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 6
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.71 E-value=4.6e-17 Score=171.74 Aligned_cols=217 Identities=15% Similarity=0.152 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCccccccchHHHHH-HhccCcH--HHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHh
Q 036199 440 DSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLAS-FLHSAAA--TEETLAILVALSS-YAYFISKIVASGALASILNM 515 (710)
Q Consensus 440 d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~-lL~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~L 515 (710)
+.+.+..|+..|.+++.+..+...+...|+++.|+. +|.+++. ++.|+++|.+++. ++.++..+++.|++|+|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456677888888888776556666678999999999 9999876 3799999999985 56788899999999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCCh
Q 036199 516 LDS-PNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCL 590 (710)
Q Consensus 516 L~~-~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I 590 (710)
|.+ .++.+++.|++||.||+.+ +.+...++++|+++.|+.+|.+ ..++..|+++|.+|+. .++.+..+++ .|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCH
Confidence 985 4789999999999999975 5566778889999999999965 4679999999999987 5778889998 7999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC-chHHHH----HHhh--cCCHHHHHHHHHHHHHh
Q 036199 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG-VIPSLV----KISV--YGNDKAKVSALELRRLL 657 (710)
Q Consensus 591 ~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G-~v~~Lv----~L~~--~gt~~~k~kA~~LL~~l 657 (710)
+.|+.+|.++++..++.|+.+|.+|....+.........+ .+..++ +-++ .......++|..++..+
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998644333332211 122222 2122 22467788898888844
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.63 E-value=8.6e-17 Score=187.99 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=70.3
Q ss_pred cCCCCCcccccCCccccCCceecCCC-CccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESG-QTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G-~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
...+|++|+|||++++|+|||++++| +||||.+|++|+.. +.|||.|+++|++..++||++||+.|++||..++
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998 79999999999986 6799999999999999999999999999999986
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.60 E-value=1.8e-16 Score=126.49 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=50.3
Q ss_pred cccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHH
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~ 323 (710)
.|.||||+++|+|||++ +|||||||.+|++|+.. +.+||+|+++|...+|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 99999999999999986 457999999999999999853
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.55 E-value=7.6e-15 Score=127.29 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=67.8
Q ss_pred CCCCCcccccCCccccCCceecC-CCCccchhhHHHHhhh-CCCCCCCCCCcc-CCCCCcccHHHHHHHHHHHHHcCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEE-GNHTCPKTKMKL-VCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~-g~~~cP~t~~~l-~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.||+.++++|+.|...+++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 35788999999999999999999 9999999999999974 557999999997 566899999999999999998764
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.4e-14 Score=146.40 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=64.5
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCC--CCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPK--TKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~--t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
....+|.||||+++|+|||+. .|||+|||.||++||.. |..+||+ |++++....|+||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 356789999999999999985 99999999999999986 4568999 88999999999999999999999775
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.43 E-value=5.6e-14 Score=128.83 Aligned_cols=69 Identities=14% Similarity=0.371 Sum_probs=63.6
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC-CCCcccHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-QSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-~~l~pN~~l~~~i~~w~~ 333 (710)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.||+.|+++|+.|.-
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 467899999999999999999999999999999998777799999999987 789999999999998854
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.5e-13 Score=130.22 Aligned_cols=69 Identities=22% Similarity=0.424 Sum_probs=64.0
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC-CCcccHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ-SLTPNTAMKDLISKWCM 333 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~-~l~pN~~l~~~i~~w~~ 333 (710)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.+|..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997777999999999887 89999999999998863
No 52
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=114.61 Aligned_cols=70 Identities=14% Similarity=0.409 Sum_probs=64.3
Q ss_pred CCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 265 IPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
+++++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++....+.||+.++++|+.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 46789999999999999998 89999999999999984 578999999998888999999999999998764
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.28 E-value=9e-11 Score=133.01 Aligned_cols=263 Identities=14% Similarity=0.213 Sum_probs=200.9
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC----C-
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS----G- 461 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~----k- 461 (710)
.+|.+. -.+.++.|+..|+.++++ ++.. +..++++.|+..|+.+ ..|.++.+.++..|+++...+.. .
T Consensus 28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~~~~~~~ 101 (651)
T 3grl_A 28 DRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEEEEVEEN 101 (651)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCccccccc
Confidence 344433 467899999999999864 3333 3467899999999884 47899999999999998543211 0
Q ss_pred --------------CccccccchHHHHHHhccCcHH--HHHHHHHHHhccC--chhhHHHh-hhCcHHHHHHhhcCCCHH
Q 036199 462 --------------IPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY--AYFISKIV-ASGALASILNMLDSPNGK 522 (710)
Q Consensus 462 --------------~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~--~~nk~~I~-~~GaI~~LV~LL~~~~~~ 522 (710)
..+.+.+.|+.|+.+|++.+.. -+++..|..|+.. ..+...|. ..++|+.||++|.+....
T Consensus 102 ~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~ 181 (651)
T 3grl_A 102 STRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREV 181 (651)
T ss_dssp ------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHH
T ss_pred ccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHH
Confidence 1123578899999999988753 5899999988843 33788888 469999999999999999
Q ss_pred HHHHHHHHHHHhccCccccccccc-ccchhchHHhhcC------chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHH
Q 036199 523 FQELAIKILHNLSSDVDIQSHIAP-SEFLPKLVPFLKD------ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVA 594 (710)
Q Consensus 523 ~~~~A~~aL~nLs~~~en~~~iv~-aG~V~~Lv~lL~~------~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv 594 (710)
.+-.|+..|.+|+.+..+..+++. .|+++.|+.++.+ +.++..|+.+|.||.. ++.++..+.+ .|+++.|+
T Consensus 182 iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t~~i~~L~ 260 (651)
T 3grl_A 182 IRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-GSYIQRMK 260 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCGGGGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-cCCHHHHH
Confidence 999999999999998777777766 6999999999943 2358999999999998 5668888888 79999999
Q ss_pred HHhhcCC------HHHHHH---HHHHHHHHhcCC------hHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHh
Q 036199 595 ELLEIGS------EEDQEH---AVAILLCLCSQR------DQYCKLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLL 657 (710)
Q Consensus 595 ~lL~~~s------~~~ke~---A~~aL~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l 657 (710)
.+|..+. +..-.+ ++.++.-|+..+ ..++..+.+.|+++.|+.++... ....+..|...+..+
T Consensus 261 ~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 261 PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp GGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9997542 222334 556666666652 35788999999999999997654 456776676666543
No 54
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.26 E-value=2.2e-12 Score=115.25 Aligned_cols=68 Identities=18% Similarity=0.374 Sum_probs=61.2
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCC----CCcccHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ----SLTPNTAMKDLISKWC 332 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~----~l~pN~~l~~~i~~w~ 332 (710)
.+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.|++++... .+.+|..+.++|+.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 356789999999999999998 999999999999999864 7899999998865 6889999999998873
No 55
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-13 Score=113.67 Aligned_cols=64 Identities=22% Similarity=0.508 Sum_probs=57.0
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhC------CCCCCCCCCccCCCCCcccHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEG------NHTCPKTKMKLVCQSLTPNTAMKDL 327 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g------~~~cP~t~~~l~~~~l~pN~~l~~~ 327 (710)
.+.+++.||||++.|.|||+++|||+||+.||.+|+... ..+||.|++++....+.||+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 457789999999999999999999999999999999753 6789999999998889999776554
No 56
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.25 E-value=1.8e-12 Score=117.12 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=61.9
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC-------CCCcccHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-------QSLTPNTAMKDLISKWC 332 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-------~~l~pN~~l~~~i~~w~ 332 (710)
..++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|...|+.|.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 456799999999999999999999999999999998878899999998864 56788999999999985
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=3.6e-12 Score=115.57 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 265 IPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++....+.||+.|+++|+.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 46789999999999999999 9999999999999997 68999999998889999999999999987654
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=1.4e-12 Score=110.84 Aligned_cols=66 Identities=27% Similarity=0.596 Sum_probs=58.1
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhh-----CCCCCCCCCCccCCCCCcccHHHHHHH
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-----GNHTCPKTKMKLVCQSLTPNTAMKDLI 328 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-----g~~~cP~t~~~l~~~~l~pN~~l~~~i 328 (710)
..+.++|.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|++++....+.||+.++++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 346778999999999999999999999999999999986 377899999999988999997765543
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.24 E-value=3.8e-12 Score=115.54 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=63.6
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 356788999999999999999999999999999999987767999999999988899999999999874
No 60
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=112.93 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=64.4
Q ss_pred CCCCcccccCCccccCCcee-cCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 264 IIPEVFKCPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
.+.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+++|+.+..+++..-...
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 35678999999999999999 9999999999999999976679999999999889999999998888765543
No 61
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=3.4e-12 Score=122.91 Aligned_cols=70 Identities=29% Similarity=0.484 Sum_probs=62.6
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCC-CCCcccHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-QSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-~~l~pN~~l~~~i~~w~~ 333 (710)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++.. ..+.||..+.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 345779999999999999998 9999999999999999888899999999854 569999999999999844
No 62
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=102.54 Aligned_cols=60 Identities=28% Similarity=0.455 Sum_probs=50.8
Q ss_pred cCCCCCcccccCCccccCCceecC-CCCccchhhHHHHhhh-CCCCCCCCCCccC-CCCCccc
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEE-GNHTCPKTKMKLV-CQSLTPN 321 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~-~~~l~pN 321 (710)
...+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345788999999999999999999 9999999999999985 4478999999754 4456666
No 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-12 Score=109.54 Aligned_cols=65 Identities=20% Similarity=0.566 Sum_probs=57.6
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhh-----CCCCCCCCCCccCCCCCcccHHHHHH
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-----GNHTCPKTKMKLVCQSLTPNTAMKDL 327 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-----g~~~cP~t~~~l~~~~l~pN~~l~~~ 327 (710)
..+.+++.||||++.+.||++++|||+||+.||.+|+.. +..+||.|++++....+.||+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 356778999999999999999999999999999999975 47789999999998889999776544
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6.7e-12 Score=105.94 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=55.2
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLIS 329 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~ 329 (710)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 44667999999999999999999999999999999975 678999999987 67889976655543
No 65
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.8e-11 Score=99.10 Aligned_cols=55 Identities=15% Similarity=0.355 Sum_probs=49.6
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l 318 (710)
.+++++.||||++.|.|||+++|||+||+.||.+|+..+..+||.|++++....+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4577899999999999999999999999999999998778899999998876543
No 66
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.2e-11 Score=98.65 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=51.9
Q ss_pred CCCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
..+.+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3467789999999999999998 99999999999999975 6789999999988877766
No 67
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.2e-11 Score=110.82 Aligned_cols=70 Identities=23% Similarity=0.516 Sum_probs=61.0
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++....+.+|..+.++++.+...
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999984 346899999999999999998877777776543
No 68
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=2.4e-11 Score=113.35 Aligned_cols=64 Identities=16% Similarity=0.428 Sum_probs=52.8
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHH
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC 332 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~ 332 (710)
.++|.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 356889999999999999999999999999999985 57899999988653 34666666666554
No 69
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.09 E-value=3.3e-11 Score=116.46 Aligned_cols=68 Identities=24% Similarity=0.425 Sum_probs=63.0
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+.+.|.++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 57889999999999999999999999999999999987777999999999988899999999988863
No 70
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=1.6e-11 Score=114.91 Aligned_cols=67 Identities=12% Similarity=0.314 Sum_probs=57.9
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccC---------CCCCcccHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV---------CQSLTPNTAMKDLISK 330 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~---------~~~l~pN~~l~~~i~~ 330 (710)
.+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++. ...+.||..+++.|.+
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 467889999999999999999999999999999999987789999988643 2346689888888864
No 71
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=95.73 Aligned_cols=56 Identities=27% Similarity=0.470 Sum_probs=49.2
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhh--hCCCCCCCCCCccCCCCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE--EGNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~--~g~~~cP~t~~~l~~~~l 318 (710)
..+.+++.||||++.|.|||+++|||+||+.||.+|+. .+..+||.|++++....+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 35678899999999999999999999999999999997 356789999998876543
No 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=6.4e-11 Score=107.03 Aligned_cols=66 Identities=17% Similarity=0.375 Sum_probs=57.7
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc-ccHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT-PNTAMKDLISK 330 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~-pN~~l~~~i~~ 330 (710)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+. ++..+.++|.+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567999999999999999999999999999999998778999999999877765 56777777765
No 73
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=8.6e-11 Score=94.71 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=50.3
Q ss_pred CcccccCCcc-ccCCc----eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 267 EVFKCPLSLR-LMYDP----VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 267 ~~f~CPI~~~-~m~DP----V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+..+||.|+.++....+.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998788899999999988888876
No 74
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.05 E-value=6.3e-09 Score=118.04 Aligned_cols=259 Identities=14% Similarity=0.179 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHHHHHccCccc-----------------c-hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh
Q 036199 394 NWDCQCKVIEDYETRLEHDNQV-----------------S-HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV 455 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~-----------------r-~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~ 455 (710)
+.+....+++.|..+...+++. . ..+.+.+.|+.|+.+|.+ .|-.++.+++.+|..++
T Consensus 75 D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~df~vR~~alqlL~~L~ 150 (651)
T 3grl_A 75 DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FDFHVRWPGVKLLTSLL 150 (651)
T ss_dssp CHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----ccHHHHHHHHHHHHHHH
Confidence 6777788888887666543321 1 233567899999999987 78999999999999996
Q ss_pred ccC--CCCCccc-cccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCC----HHHHH
Q 036199 456 SKN--RSGIPYL-NEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA-SGALASILNMLDSPN----GKFQE 525 (710)
Q Consensus 456 ~~~--~~k~~i~-~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~----~~~~~ 525 (710)
.+. +++..|. ..++|+.||.+|++... +-.|+..|.+|+....+..+++. .|+++.|++++..+. ..+..
T Consensus 151 ~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~ 230 (651)
T 3grl_A 151 KQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVE 230 (651)
T ss_dssp HHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHH
T ss_pred hcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHH
Confidence 543 2455566 56999999999997654 34788889999988777777776 699999999996543 37889
Q ss_pred HHHHHHHHhcc-CcccccccccccchhchHHhhcCc--h------H---HHHHHHHHHHHhcC-------cchHHHHHhh
Q 036199 526 LAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDA--T------L---AVSCLVILKNMCNT-------EHARVCVVET 586 (710)
Q Consensus 526 ~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~--~------~---~~~al~iL~nLa~~-------~e~r~~i~~~ 586 (710)
+++.+|.||.. +..|+..+.+.|+|+.|..+|..+ . - ...++.+++.|... ..++.++.+
T Consensus 231 DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~- 309 (651)
T 3grl_A 231 DCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ- 309 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-
Confidence 99999999997 556999999999999999999422 1 1 23367778888763 235678888
Q ss_pred cCChHHHHHHhhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHhCC-----chHHH----HHHhhc-CCHHHHHHHHHHH
Q 036199 587 SGCLPSVAELLEIG--SEEDQEHAVAILLCLCSQRDQYCKLVMNEG-----VIPSL----VKISVY-GNDKAKVSALELR 654 (710)
Q Consensus 587 ~g~I~~Lv~lL~~~--s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G-----~v~~L----v~L~~~-gt~~~k~kA~~LL 654 (710)
.|+++.|++++... ....+..|+.++..+.++++.++..+.+.- ..|.+ +.+..+ .....|-.|...+
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 79999999998864 778899999999999999988888777643 22333 333433 3466777777777
Q ss_pred HHh
Q 036199 655 RLL 657 (710)
Q Consensus 655 ~~l 657 (710)
+.+
T Consensus 390 ~ay 392 (651)
T 3grl_A 390 QCF 392 (651)
T ss_dssp HHH
T ss_pred HHH
Confidence 733
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=91.32 Aligned_cols=46 Identities=30% Similarity=0.564 Sum_probs=41.9
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKT 309 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t 309 (710)
.+.+++.||||++.|.|||+++|||+||+.||++|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46778999999999999999999999999999999985 56789986
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.96 E-value=3.5e-08 Score=97.50 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=150.9
Q ss_pred cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCch
Q 036199 421 STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAY 498 (710)
Q Consensus 421 ~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~ 498 (710)
..+.++.|+.+|.+ .+..++..|+..|..+. ..++++.|+.+|.+++.. ..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG---- 78 (211)
T ss_dssp CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----
T ss_pred CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----
Confidence 46789999999987 78999999999998762 257899999999988753 57777776653
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcC
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNT 576 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~ 576 (710)
..++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.+|.++ .++..|+.+|..+..
T Consensus 79 ------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 79 ------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 35689999999999999999999999998852 46889999999664 578888999988742
Q ss_pred cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
...++.|+.++...++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|..
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999999998843 2457889999999999999999999987
Q ss_pred hhhcc
Q 036199 657 LRDVA 661 (710)
Q Consensus 657 l~~~~ 661 (710)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 76553
No 77
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=6.9e-10 Score=86.98 Aligned_cols=46 Identities=28% Similarity=0.720 Sum_probs=41.5
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKT 309 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t 309 (710)
.+.+++.||||++.+.|||+++|||+|++.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999999999999999999999999864 67889986
No 78
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.94 E-value=2.8e-10 Score=93.17 Aligned_cols=57 Identities=19% Similarity=0.386 Sum_probs=51.2
Q ss_pred CCCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccH
Q 036199 265 IPEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNT 322 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~ 322 (710)
..+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.|++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 45679999999999999 89999999999999999986 46899999999988888764
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.2e-10 Score=91.29 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
..+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 4567999999999999999999999999999999985 47899999887643
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.90 E-value=5.4e-08 Score=95.35 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=151.2
Q ss_pred ccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCc
Q 036199 420 SSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYA 497 (710)
Q Consensus 420 ~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~ 497 (710)
...+..+.++.+|.+ .|..++..|+.+|..+. ..++++.|+.+|.+++.. ..|+.+|..+.
T Consensus 11 ~~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--- 73 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG--- 73 (201)
T ss_dssp CCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred cCCcchHHHHHHhcC----CCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence 345778899999988 78999999999999762 247899999999887753 57777776553
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhc
Q 036199 498 YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN 575 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~ 575 (710)
..++++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+|.++ .++..|+.+|..+..
T Consensus 74 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 74 -------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 34689999999999999999999999998752 45889999999664 578888888888742
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
...++.|+.++...++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|...|.
T Consensus 137 -----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 -----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999998832 135788999999999999999999998
Q ss_pred Hhhh
Q 036199 656 LLRD 659 (710)
Q Consensus 656 ~l~~ 659 (710)
.+..
T Consensus 195 ~l~~ 198 (201)
T 3ltj_A 195 THKS 198 (201)
T ss_dssp HCC-
T ss_pred HHHh
Confidence 7653
No 81
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2e-09 Score=91.86 Aligned_cols=53 Identities=21% Similarity=0.467 Sum_probs=47.2
Q ss_pred CCCCcccccCCccccCC----ceecCCCCccchhhHHHHhhhC--CCCCCCCCCccCCC
Q 036199 264 IIPEVFKCPLSLRLMYD----PVVIESGQTFERMWIQKWFEEG--NHTCPKTKMKLVCQ 316 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~D----PV~~~~G~ty~r~~I~~w~~~g--~~~cP~t~~~l~~~ 316 (710)
.+.+++.||||++.|.| |++++|||+||+.||.+|+... ..+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45678999999999999 9999999999999999999864 57899999987654
No 82
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.85 E-value=6e-10 Score=89.06 Aligned_cols=55 Identities=20% Similarity=0.428 Sum_probs=49.2
Q ss_pred CcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccH
Q 036199 267 EVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNT 322 (710)
Q Consensus 267 ~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~ 322 (710)
+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++...++.|++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 468899999999998 88999999999999999986 67999999999888877753
No 83
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=87.81 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=46.3
Q ss_pred CCCCCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 263 AIIPEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
...++++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3457789999999999999 89999999999999999986 6789999998764
No 84
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.79 E-value=5.7e-09 Score=87.04 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=48.3
Q ss_pred CCCCcccccCCccccCCc---eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 264 IIPEVFKCPLSLRLMYDP---VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DP---V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
...+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 345678999999999987 44699999999999999975 5799999999988776665
No 85
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.75 E-value=7.8e-09 Score=86.35 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=46.5
Q ss_pred CCCcccccCCcccc--CCceecC--CCCccchhhHHHHhhhCCCCCCCCCCccCCCCC
Q 036199 265 IPEVFKCPLSLRLM--YDPVVIE--SGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 265 ~p~~f~CPI~~~~m--~DPV~~~--~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l 318 (710)
..+++.||||++.+ .||++.+ |||+||+.||.+|+..+...||.|++++....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 46789999999998 5677776 999999999999998778899999999876543
No 86
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.74 E-value=4.2e-07 Score=89.62 Aligned_cols=177 Identities=18% Similarity=0.148 Sum_probs=141.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++.++..|+..|..+. ..+.++.|+.+|.+ .+..++..|+.+|..+. ..
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~----------~~ 80 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKD----EDAWVRRAAADALGQIG----------DE 80 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHC----------CG
T ss_pred HHHcCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcC----CCHHHHHHHHHHHHhhC----------CH
Confidence 6677889999999998887653 24689999999987 68999999999998872 35
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
++++.|+.+|.+++.. ..|+.+|..+. ..++++.|+.+|.++++.++..|+.+|.++.
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------- 140 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIG---------- 140 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------
Confidence 7899999999988753 57888887654 3468999999999999999999999999985
Q ss_pred cccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh
Q 036199 546 PSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
...+++.|+.++.++ .++..|+.+|..+.. ..+++.|..++...++.++..|+.+|..+.....
T Consensus 141 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 141 DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 246889999999664 578888888888842 3467889999999999999999999998877653
No 87
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.72 E-value=7.2e-08 Score=113.00 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=147.6
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhccC--ccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASIL-NMLDSPNGKFQELAIKILHNLSSD--VDIQS 542 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV-~LL~~~~~~~~~~A~~aL~nLs~~--~en~~ 542 (710)
..|.++++.|++++. +..|+++|.+|+.+..++..+...|+|.+++ .+|.+.+.+++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456678888998775 4699999999999999999999999988765 578888999999999999999964 57888
Q ss_pred ccccccchhchHHhhcC-----------------------chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhh
Q 036199 543 HIAPSEFLPKLVPFLKD-----------------------ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~-----------------------~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
.+++.|++++|..+|.. .++.+.++.+|++||. +.+....+.. .++++.|+..|.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFRLI 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHHHH
Confidence 99999999999998831 0235678899999997 5566677777 788999999885
Q ss_pred c---CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchH---HHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 599 I---GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIP---SLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 599 ~---~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~---~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
. .....+..|+.+|+.++..+....+.+...|... .|..+..+.... +.-+..+|..+
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni 256 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNV 256 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhH
Confidence 4 3568899999999999999988888888887643 444444444443 44555555543
No 88
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.72 E-value=5.3e-07 Score=88.15 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=143.1
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
++..|.+.++.++..|+..|..+. ..+.++.|+.+|.+ .+..++..|+.+|..+.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKD----EDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC----------
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhC----------
Confidence 337788899999999999887653 24679999999976 78999999999998872
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
..++++.|+.+|.+++.. ..|+.+|..+. ...+++.|+.+|.++++.++..|+.+|.++.
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 346899999999988753 57888887653 3458999999999999999999999999885
Q ss_pred cccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 544 IAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
..++++.|+.++.++ .++..|+.+|..+.. ..+++.|..++...++.++..|+.+|..+-
T Consensus 136 --~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 --DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 256889999999664 578888888888832 346788899999999999999999997753
No 89
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.67 E-value=6.7e-07 Score=92.21 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=64.2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVV 584 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~ 584 (710)
.+++.|+.+|.++++.++..|+.+|.++.. .++++.|+.+|.++ .++..|+.+|..+....
T Consensus 128 ~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------- 190 (280)
T 1oyz_A 128 KIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------- 190 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-------
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-------
Confidence 345666666666666666666666655532 23566666666442 34555566665553211
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
...++.|+.++...++.++..|+.+|..+. ...+++.|+.++.+.+ ++..|...|..+
T Consensus 191 --~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 191 --SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 223556666666666666666666665553 1235566666665543 445555555444
No 90
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.66 E-value=4.5e-07 Score=93.51 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=85.6
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHH
Q 036199 506 SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCV 583 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i 583 (710)
.++++.|+.+|.++++.++..|+.+|.++... ...+++.|+.+|.+ +.++..|+.+|..+.
T Consensus 158 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------- 220 (280)
T 1oyz_A 158 KATIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------- 220 (280)
T ss_dssp -CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---------
Confidence 45889999999999999999999999887422 23678889998865 456788888888775
Q ss_pred HhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHH
Q 036199 584 VETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRR 655 (710)
Q Consensus 584 ~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~ 655 (710)
. ...++.|+..+...+ ++..|+.+|..+.. ..++|.|..++.+ .++.....+...|+
T Consensus 221 -~-~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 221 -D-KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp -C-GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -C-HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2 457888888887644 77888888877643 2568888887754 45555555555543
No 91
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.60 E-value=1.2e-08 Score=93.61 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=49.2
Q ss_pred CCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 266 PEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
++++.||||++.|.|| |+++|||+|++.||.+|+.. ..+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5689999999999999 99999999999999999985 4589999999987776665
No 92
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=82.98 Aligned_cols=52 Identities=15% Similarity=0.459 Sum_probs=46.1
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
...+++.||||++.+.+ ++++|||+|++.||.+|+. .+.+||.|++++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 9999999999999999998 5789999998887543
No 93
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.59 E-value=3.2e-08 Score=76.46 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=41.9
Q ss_pred CcccccCCccccCC----ceecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 267 EVFKCPLSLRLMYD----PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 267 ~~f~CPI~~~~m~D----PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45789999999977 8889999999999999999875 78999998764
No 94
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.59 E-value=3.2e-08 Score=80.09 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=42.2
Q ss_pred CcccccCCccccCCc-eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 267 EVFKCPLSLRLMYDP-VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 267 ~~f~CPI~~~~m~DP-V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.+..||||++.+.|| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 457899999999998 77899999999999999975 4689999988764
No 95
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=6.9e-08 Score=79.52 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=44.8
Q ss_pred CCCCcccccCCccccCCceec---CCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI---ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~---~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
....++.||||++.|.+|+.+ +|||+|++.||.+|+... .+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 456678999999999988766 999999999999999864 5899999987653
No 96
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=2.1e-08 Score=78.18 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=40.6
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.+++.||||++.+.|||+++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 356889999999999999999999999999885 5689999987653
No 97
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.50 E-value=9.2e-08 Score=73.89 Aligned_cols=48 Identities=21% Similarity=0.552 Sum_probs=41.9
Q ss_pred CCcccccCCccccCC---ceecC-CCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYD---PVVIE-SGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~D---PV~~~-~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
.++..||||++.|.+ |++++ |||.|++.||.+|+.. +.+||.|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 456789999999999 88887 9999999999999975 678999988653
No 98
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-07 Score=76.29 Aligned_cols=50 Identities=18% Similarity=0.457 Sum_probs=42.4
Q ss_pred CCCcccccCCccccC---CceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLMY---DPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~---DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
...+..||||++.|. +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 355788999999884 5678999999999999999986 4579999988765
No 99
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.46 E-value=1e-07 Score=82.03 Aligned_cols=50 Identities=14% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCCcccccCCccccCC---ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLMYD---PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
..++..||||++.|.+ +++++|||.|++.||.+|+.. +.+||.|+.++.+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567899999999988 888999999999999999974 6699999988764
No 100
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.44 E-value=1.2e-07 Score=84.95 Aligned_cols=50 Identities=12% Similarity=0.263 Sum_probs=43.0
Q ss_pred CCcccccCCccccCCce------------------ecCCCCccchhhHHHHhh----hCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPV------------------VIESGQTFERMWIQKWFE----EGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV------------------~~~~G~ty~r~~I~~w~~----~g~~~cP~t~~~l~~ 315 (710)
+.+..||||++.|.+|+ +++|||.|++.||.+|+. ..+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 44678999999999987 789999999999999996 346799999987754
No 101
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2.4e-07 Score=76.50 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=43.5
Q ss_pred CCcccccCCccccCCc---eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDP---VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP---V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.++..||||++.|.+| ++++|||.|++.||.+|+.. +.+||.|++++.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4568899999999998 77899999999999999986 5689999988765
No 102
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.38 E-value=3.4e-06 Score=100.95 Aligned_cols=264 Identities=12% Similarity=0.068 Sum_probs=178.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccch--hcc--cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSH--SLS--STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIP 463 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~--~I~--~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~ 463 (710)
..+.+.++..+..++..|..+++..+.... .+. -...++.++++|.+ .+..++..|+.+|.++.........
T Consensus 135 ~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 135 SLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH----SSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC----SSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcccHHHH
Confidence 456667788888899999888876443311 110 12345556666654 7899999999999877543221111
Q ss_pred cccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 464 YLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
..-.+.++.|+.++.+++. +..|+.+|..|+........-.-.+.++.++.++.+.++.++..|+..+..++.....+
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~ 290 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK 290 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH
Confidence 1123678888888887765 36888888888743221110011357888999999999999999999999998654322
Q ss_pred cccc--cccchhchHHhh-----------cC-------------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHH
Q 036199 542 SHIA--PSEFLPKLVPFL-----------KD-------------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAE 595 (710)
Q Consensus 542 ~~iv--~aG~V~~Lv~lL-----------~~-------------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~ 595 (710)
..+. -...+|.|+..| .+ -.++..|..+|..|+.... ..+.. ..++.+..
T Consensus 291 ~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~--~l~~~l~~ 366 (852)
T 4fdd_A 291 DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP--HILPLLKE 366 (852)
T ss_dssp HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH--HHHHHHHH
Confidence 2111 125567777766 22 1235667788888876322 12222 35777888
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 596 LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 596 lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+.+.+...|+.|+.+|.+++........ -.-.++++.|+.++.+.++++|..|.+.|..+..+
T Consensus 367 ~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 367 LLFHHEWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999988754222 22356789999999999999999999999987765
No 103
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.37 E-value=9.1e-08 Score=79.04 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=41.1
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.+++.||||++.+.|||+++|||+ ||+.||.+| .+||.|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 457899999999999999999999 999999999 689999988764
No 104
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.36 E-value=1.8e-07 Score=100.46 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=44.9
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
...||||++.+.|||+++|||+||+.||..|+..+..+||.|++++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999987788999999987654
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.32 E-value=9.1e-07 Score=103.66 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=122.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchH-HhhcC--chHHHHHHHHHHHHhc--CcchHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLV-PFLKD--ATLAVSCLVILKNMCN--TEHARV 581 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv-~lL~~--~~~~~~al~iL~nLa~--~~e~r~ 581 (710)
..|.||++.|.++++..+..|+.||.||+.++.++..+...|+|.+++ .+|.| .++++.|+++|+||+. ..+...
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 457778899999999999999999999999989999999999998765 56765 4679999999999997 456677
Q ss_pred HHHhhcCChHHHHHHhhcCC---------------------HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh
Q 036199 582 CVVETSGCLPSVAELLEIGS---------------------EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s---------------------~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~ 640 (710)
.+.+ .|++++|..++.... ....++++.+|++||..+.+....+...|+++.|+.++.
T Consensus 114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 8888 789999999886311 123467889999999988777888889999999988864
Q ss_pred cC---CHHHHHHHHHHHHHhhh
Q 036199 641 YG---NDKAKVSALELRRLLRD 659 (710)
Q Consensus 641 ~g---t~~~k~kA~~LL~~l~~ 659 (710)
+. ....+..|..+|..|.+
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHhc
Confidence 43 35677777777776654
No 106
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.31 E-value=1.4e-06 Score=104.30 Aligned_cols=264 Identities=11% Similarity=0.088 Sum_probs=174.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..+.+.+.+++..|+..+..+....++... -.-.++++.++.++.+ .+..++..|+.+|..++........-.-.
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGD----EEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 345566788899999988776654332110 0113567777777765 78999999999999986543211111113
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhc-----------C-----------CCH
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA--SGALASILNMLD-----------S-----------PNG 521 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~-----------~-----------~~~ 521 (710)
+.++.++.++.+.+. +..|+..+..++.....+..+.. ...+|.|+..+. + .+-
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 578888888877654 35788888888865544433321 356777777772 2 111
Q ss_pred HHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc
Q 036199 522 KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 522 ~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
.+++.|+.+|..|+..... .+ -...++.+..++.++ ..++.|+.+|.+++........-.- .+.++.|+..+..
T Consensus 336 ~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d 411 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSD 411 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCC
Confidence 3477888899888853321 12 224566677777554 5688899999999985432211111 4578999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.++.++..|+++|..++...........-.++++.|+..+.+.++++|+.|.+.|..+.+.
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864321111111235678888888889999999999998877654
No 107
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.24 E-value=1.7e-07 Score=85.87 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=50.0
Q ss_pred CCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccH
Q 036199 266 PEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNT 322 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~ 322 (710)
++.+.||||++.+.+| |+++|||+|+..||.+|+.. +.+||.|+.++....++|++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 5678999999999998 89999999999999999986 56999999999888877764
No 108
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.19 E-value=2.6e-07 Score=79.96 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=49.7
Q ss_pred CcccccCCccccCCceec---CCCCccchhhHHHHhh----hC---CCCCCC--CCCc--cCCCCCcccHHHHHHHHHHH
Q 036199 267 EVFKCPLSLRLMYDPVVI---ESGQTFERMWIQKWFE----EG---NHTCPK--TKMK--LVCQSLTPNTAMKDLISKWC 332 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~---~~G~ty~r~~I~~w~~----~g---~~~cP~--t~~~--l~~~~l~pN~~l~~~i~~w~ 332 (710)
+.|.||||++.+.+|+++ +|||+||+.||++||. .| ...||. |+.. +.+.. +.+.....+++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHHH
Confidence 578999999999999886 6999999999999986 34 247999 9887 55433 22333356677776
Q ss_pred H
Q 036199 333 M 333 (710)
Q Consensus 333 ~ 333 (710)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 5
No 109
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=6.3e-07 Score=74.10 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=40.6
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
.+++.||||++.+.|||+++|||+ ||+.|++++ ..||.|++++...
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 557899999999999999999999 999999754 6799999988653
No 110
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.17 E-value=9.1e-06 Score=89.00 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=171.4
Q ss_pred hhhcCC--CHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-C-CC
Q 036199 388 SRLTEL--NWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-S-GI 462 (710)
Q Consensus 388 ~~L~s~--~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-~-k~ 462 (710)
..+.+. ++..+..|+..+..++++. ++.... .....++.++..|.+. ..+..++..|+.++.++...-. + ..
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (462)
T 1ibr_B 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDK 211 (462)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTTTHHHHTS
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566 7888888999999988753 221111 1124677777777651 1168899999999998642110 0 00
Q ss_pred ccccccchHHHHHHhccCcH--HHHHHHHHHHhccCch--hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 036199 463 PYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAY--FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV 538 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~--nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~ 538 (710)
.....-.++.|...+.+++. +..++.+|..+..... ....+ ..+.++.++..+.+.++.++..|+..+.+++...
T Consensus 212 ~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 00011135556666665554 2577777777763221 11111 1167888888888889999999999988887532
Q ss_pred ------------c------ccccccc---ccchhchHHhhcC---------chHHHHHHHHHHHHhcCcchHHHHHhhcC
Q 036199 539 ------------D------IQSHIAP---SEFLPKLVPFLKD---------ATLAVSCLVILKNMCNTEHARVCVVETSG 588 (710)
Q Consensus 539 ------------e------n~~~iv~---aG~V~~Lv~lL~~---------~~~~~~al~iL~nLa~~~e~r~~i~~~~g 588 (710)
+ ....+++ ...+|.|+..|.+ ...+..|..+|..|+..-. ..+.. .
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~~--~ 366 (462)
T 1ibr_B 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP--H 366 (462)
T ss_dssp HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHH--H
T ss_pred HHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHHH--H
Confidence 0 0111111 3356666666632 2467788888888887322 12332 3
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
.++.+...+...+...|+.|+.+|..++.+.. ..... .-..++|.|+.++.+.++++|..|.+.|..+..+-.
T Consensus 367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 56777888888899999999999999997653 11111 115689999999999999999999999998887643
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.16 E-value=8.7e-05 Score=85.25 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=165.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCC-Ccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSG-IPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k-~~i~~ 466 (710)
..|.+.++.++..|+..+..+.+.+++. +...++++.|..+|.+ .|+.++.+|+.+|..+..++... .....
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 4566778999999999999998866552 2335788999999976 78999999999999997654322 22234
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD----VDI 540 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~----~en 540 (710)
.+.+..|+..|...+.. ...+.+|..+...+..- ....++.+..+|++.++.++..|+.++.++... ++.
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 56788888888766543 35556666665332211 134678888888888889999999999998742 222
Q ss_pred ccccccccchhchHHhhc-CchHHHHHHHHHHHHhc-Ccch-------------------HHHH------HhhcC----C
Q 036199 541 QSHIAPSEFLPKLVPFLK-DATLAVSCLVILKNMCN-TEHA-------------------RVCV------VETSG----C 589 (710)
Q Consensus 541 ~~~iv~aG~V~~Lv~lL~-~~~~~~~al~iL~nLa~-~~e~-------------------r~~i------~~~~g----~ 589 (710)
... +-..++++|+.++. +++++..|+..|..++. +++. +.++ +. .. .
T Consensus 277 ~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~-~~nv~~i 354 (591)
T 2vgl_B 277 YNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS-QANIAQV 354 (591)
T ss_dssp HHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC-SSTHHHH
T ss_pred HHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC-hhhHHHH
Confidence 111 12344566665553 34556666666666653 1110 1111 11 12 2
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-Hhhh
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRD 659 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~ 659 (710)
++.|...+...+...+..++.++..+|...+... ...++.|+.++.+..+.++..+...++ +++.
T Consensus 355 v~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 3445556667899999999999999998775332 235688888888887777766655555 3443
No 112
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.04 E-value=2.6e-05 Score=89.63 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=165.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
.+.+.+.+.+.-+...+..+++.+++.. ..++..|..+..+.|+.++..|+.+|.++.. .-+...
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~---------~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~ 121 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMA---------IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV------DKITEY 121 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHH---------HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS------GGGHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHH---------HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh------HHHHHH
Confidence 3455667777666667777776555432 1223333333344789999888888877631 113456
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-cccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIA 545 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv 545 (710)
.++.+..+|.+.+. +..|+.+|..+.... ...+...+.++.|..+|.+.++.++..|+.+|..++...... ..-.
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 77889999988775 468888888887422 123334578999999999999999999999999999754322 1222
Q ss_pred cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC---Ch
Q 036199 546 PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ---RD 620 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~---~~ 620 (710)
..+.+..|+..+.+ +-.+-..+.+|..++..++ ... ...++.+..++++.++.++-.|+.++..+... ++
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--REA---QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HHH---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HHH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 34567777777743 3345666777777664322 111 23567777788888999999999999998742 22
Q ss_pred HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 621 QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 621 ~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+..+.+ -..+.++|+.++. +++..|.-|...|..+...
T Consensus 275 ~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 275 DYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp BSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 322222 2345678887764 7888999998888877654
No 113
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=3.4e-06 Score=70.80 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=39.6
Q ss_pred CcccccCCccccCC--------------ceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 267 EVFKCPLSLRLMYD--------------PVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 267 ~~f~CPI~~~~m~D--------------PV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
++-.|+||++-|.+ ++++ .|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45669999999988 4455 59999999999999986 4699999988753
No 114
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.00 E-value=3.3e-05 Score=87.35 Aligned_cols=254 Identities=9% Similarity=0.092 Sum_probs=163.9
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
.+.+.+++++..|+..|..+++.-... ......++.+..++.+ .+..++..|+.+|..++..... ......
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ 242 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ--EDLEAL 242 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH--HHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCH--HHHHHH
Confidence 345668899999999998887653321 1224577888888866 6788999999999888543211 012345
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc--ccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ--SHI 544 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~--~~i 544 (710)
.+|.+..++.+++. +..|+.+|..++..-.. .......++.++.++.+.++.++..|+.+|..++..-... ...
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 320 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence 78888888877664 35788888777642111 1123467999999999999999999999999988532211 111
Q ss_pred ccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH
Q 036199 545 APSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY 622 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~ 622 (710)
.-...+|.+..++.++ .++..++.+|..++..-. ..... ...+|.+..++...++.++..|+.+|..++..-...
T Consensus 321 ~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 397 (588)
T 1b3u_A 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR 397 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH
Confidence 2245667777777664 456777777777765211 11122 246788888888778888888888877776533111
Q ss_pred HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 623 CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 623 ~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
.....++|.|..+..+.+.+.|..+...|..+..
T Consensus 398 ---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 398 ---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp ---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 0122345666666666666666666666655543
No 115
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.99 E-value=1.9e-05 Score=89.25 Aligned_cols=253 Identities=12% Similarity=0.046 Sum_probs=173.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..+.+.++.++..++..|..++..-... ......++.+..+|.+ .+..++..++.+|..+...-.. .....
T Consensus 331 ~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~--~~~~~ 401 (588)
T 1b3u_A 331 ELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKD----ECPEVRLNIISNLDCVNEVIGI--RQLSQ 401 (588)
T ss_dssp HHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTC----SCHHHHHHHHTTCHHHHHHSCH--HHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHhcCH--HHHHH
Confidence 3455667888888777776665421110 1123467888888875 6789999999888877542110 01234
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
..+|.|+.++.+.+.. ..++.+|..++..-.. .+.....+|.++.+|.+.+..+++.|+.+|..+...-+.. ..
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~ 477 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WA 477 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hH
Confidence 6788888888776543 5677777766531110 1122346899999999999999999999999998532221 12
Q ss_pred cccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHH
Q 036199 546 PSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
....+|.|+.++.++ .++..++.++..++..- +...+. ...++.|+..+...++.+|..++.+|..++..-..
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-- 552 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-GQDITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-- 552 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-HHHHHH--HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-CHHHHH--HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--
Confidence 345677777777654 45777888888887632 122232 35889999999999999999999999999865422
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 624 KLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
......++|.|..+..+.+.++|..|...|..+.+
T Consensus 553 -~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 553 -STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp -HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred -hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 12234567888888899999999999999987753
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.89 E-value=5.4e-06 Score=66.24 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCcccccCCccccCCceec--CCCCc-cchhhHHHHhhhCCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYDPVVI--ESGQT-FERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~--~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+++..|+||++-.+|+|++ +|||. ||..|+.+|+.. +..||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3567899999999999988 99999 899999999974 568999999875
No 117
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.88 E-value=3.5e-06 Score=89.95 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.6
Q ss_pred CCCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+.+++.||||++.+.|||+++|||+ ||+.||.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3567999999999999999999999 999999999 579999988764
No 118
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.87 E-value=5.3e-06 Score=66.08 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=41.7
Q ss_pred cccccCCccccCCceec--CCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 268 VFKCPLSLRLMYDPVVI--ESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~--~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+..|+||++-.+|||++ +|||. ||..|+.+|+..+ ..||.|++++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 46799999999999998 99998 9999999998754 689999998753
No 119
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.82 E-value=1.2e-05 Score=71.11 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=39.5
Q ss_pred cccccCCccccCCc------------------eecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 268 VFKCPLSLRLMYDP------------------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 268 ~f~CPI~~~~m~DP------------------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||.|++.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45699999999987 34699999999999999985 789999998753
No 120
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.82 E-value=4.7e-06 Score=69.57 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=40.8
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
.++..|+||++.+.|||.++|||. ||+.|+.+|. .||.|++++...
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 456789999999999999999999 9999999884 799999987653
No 121
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=5.6e-05 Score=61.07 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=39.9
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.++..|+||++-..|||.++|||. ||..|+.+ ...||.|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 456889999999999999999999 99999984 3689999998765
No 122
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=6.4e-05 Score=62.77 Aligned_cols=51 Identities=12% Similarity=0.299 Sum_probs=42.5
Q ss_pred CCcccccCCcccc--CCceecCCC-----CccchhhHHHHhhh-CCCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLM--YDPVVIESG-----QTFERMWIQKWFEE-GNHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m--~DPV~~~~G-----~ty~r~~I~~w~~~-g~~~cP~t~~~l~~~ 316 (710)
.++-.|+||++-+ .+|++++|+ |.|-+.||++|+.. +..+||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4557899999776 579999996 99999999999985 457999999988643
No 123
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.62 E-value=0.00037 Score=76.08 Aligned_cols=260 Identities=10% Similarity=0.068 Sum_probs=165.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC--------
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-------- 459 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-------- 459 (710)
..+.+.+.+.+.+|-..|..+.+.+ ..+++..|+.+|.+. +.+..++..|+.+|.++.....
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~--~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4455667788888888887755421 246788899998762 2468889999999999864321
Q ss_pred ---CCCcc-ccccchHHHHHHhccCcHH-HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHH
Q 036199 460 ---SGIPY-LNEDLFSLLASFLHSAAAT-EETLAILVALSSYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILH 532 (710)
Q Consensus 460 ---~k~~i-~~~gaI~~LV~lL~s~~~~-~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~ 532 (710)
....- .....-..|+..|.++... ..++.++..++..+.... .-.+.+|.|+..+.++ ++..+..|+.+|.
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 01100 1123344566666654321 445556666653321100 1157899999999888 8999999999999
Q ss_pred HhccCc-ccccccccccchhchHHhhcC----chHHHHHHHHHHHHhcCcc-hH-HHHHhhcCChHHHHHHhhcCCHHHH
Q 036199 533 NLSSDV-DIQSHIAPSEFLPKLVPFLKD----ATLAVSCLVILKNMCNTEH-AR-VCVVETSGCLPSVAELLEIGSEEDQ 605 (710)
Q Consensus 533 nLs~~~-en~~~iv~aG~V~~Lv~lL~~----~~~~~~al~iL~nLa~~~e-~r-~~i~~~~g~I~~Lv~lL~~~s~~~k 605 (710)
.++..- .....-.-...++.++..|.+ +.++..|+.++.++...-+ .- ..... ...++.|...+...++..+
T Consensus 156 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr 234 (462)
T 1ibr_B 156 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVR 234 (462)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHH
Confidence 998532 111111113467777777854 3567889999988765211 10 00111 1235666667777899999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 606 EHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 606 e~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..++.+|..++...+..-...+..++++.++....+.++.++..|...+..+.+.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999876643211122226778788888888999999999988877654
No 124
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.55 E-value=0.00039 Score=72.98 Aligned_cols=149 Identities=21% Similarity=0.159 Sum_probs=122.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hccCcccccccccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcC
Q 036199 512 ILNMLDSPNGKFQELAIKILHN-LSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSG 588 (710)
Q Consensus 512 LV~LL~~~~~~~~~~A~~aL~n-Ls~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g 588 (710)
+++-|.+++.+.++.++--|.. ++.+.+-...+++.||+..|+.++. +++.+.+++.+|.+|-.+..|-..++.+..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3455556777778888888887 6667888899999999999999995 467899999999999999999999988788
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhC--------C--chHHHHHHhh---cCCHHHHHHHHHHHH
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNE--------G--VIPSLVKISV---YGNDKAKVSALELRR 655 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~--------G--~v~~Lv~L~~---~gt~~~k~kA~~LL~ 655 (710)
.|..|+.++.+....+...|+.+|..+|..++.+...+.++ | ....|+.++. +++...+-+|..|+.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999998899999999999999998886555544432 2 2678888887 788999999999998
Q ss_pred -Hhhhc
Q 036199 656 -LLRDV 660 (710)
Q Consensus 656 -~l~~~ 660 (710)
+|...
T Consensus 283 ~lL~~a 288 (339)
T 3dad_A 283 KTLAAL 288 (339)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 44443
No 125
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.53 E-value=0.00019 Score=85.11 Aligned_cols=263 Identities=10% Similarity=0.076 Sum_probs=163.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCc-cc-chhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC--c
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDN-QV-SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI--P 463 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~-~~-r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~--~ 463 (710)
..+.+.+|..+..|+..+..++.... +. ...+ ...++.|+..+.+ .++.++..++.+|..++..-.... .
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMND----QSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 44567789999999999988885432 11 1111 2356666666655 678899999999888854211000 1
Q ss_pred cccccchHHHHHHhccCcH-HHHHHHHHHHhccCch--hhHHHhh--hCcHHHHHHhhcCCC--HHHHHHHHHHHHHhcc
Q 036199 464 YLNEDLFSLLASFLHSAAA-TEETLAILVALSSYAY--FISKIVA--SGALASILNMLDSPN--GKFQELAIKILHNLSS 536 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~~-~~~Aa~~L~~Ls~~~~--nk~~I~~--~GaI~~LV~LL~~~~--~~~~~~A~~aL~nLs~ 536 (710)
-.-...++.|+..|++... +..|+++|.+++..-. ....+.. ...++.|+.++.+.+ +.++..++.+|..+..
T Consensus 450 ~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp TTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 1235678888888876521 3578888887764211 0111111 356788888887543 6788899999999886
Q ss_pred CcccccccccccchhchHHhhcC-----------------chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhh
Q 036199 537 DVDIQSHIAPSEFLPKLVPFLKD-----------------ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 537 ~~en~~~iv~aG~V~~Lv~lL~~-----------------~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
.......-.-...+|.++..|.+ ..++..++.+|.+++.. +..-.... ...++.++.++.
T Consensus 530 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~ 607 (861)
T 2bpt_A 530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLE 607 (861)
T ss_dssp HCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHH
T ss_pred HcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHc
Confidence 43322111112456666666531 13456788888888762 22111111 235677788888
Q ss_pred cCCH-HHHHHHHHHHHHHhcCChH-HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 599 IGSE-EDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 599 ~~s~-~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..+. ..++.++.++..++..... ....+ ..++|.|+..+.+.+...+..|..++..+.+.
T Consensus 608 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 608 KKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp STTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7766 7899999888887754322 12111 12678888888777888898898888866543
No 126
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.48 E-value=0.002 Score=74.31 Aligned_cols=206 Identities=13% Similarity=0.170 Sum_probs=139.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+...+++++..|..+.-.+.+. ..+....++++.+ .+...++.+-..+..++..+.. +--
T Consensus 41 ~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s----~~~~~Krl~Yl~~~~~~~~~~e----~~~ 106 (618)
T 1w63_A 41 SSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIAS----QKFTDKRIGYLGAMLLLDERQD----VHL 106 (618)
T ss_dssp HHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHS----SSHHHHHHHHHHHHHHCCCCHH----HHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcC----CchHHHHHHHHHHHHHhCCCcH----HHH
Confidence 3455555556677776665544333221 2245556677776 6888888888888777554311 011
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~i 544 (710)
-++..|.+-|.+++. +..|+.+|.++.. ++ + ....++.+..+|.+.++.+++.|+.+|.++.. +++.
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~---- 176 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL---- 176 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----
Confidence 356667777777665 3578888888873 21 2 13568899999999999999999999999986 3432
Q ss_pred ccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc---------------CCHHHHHH
Q 036199 545 APSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI---------------GSEEDQEH 607 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~---------------~s~~~ke~ 607 (710)
++ +.++.|..+|.|. .++..|+.+|..++.......... ...++.|+.+|.. .++..+-.
T Consensus 177 v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 177 ME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp GG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred HH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 22 7888888899664 678889999999987543221122 2578888887763 48899988
Q ss_pred HHHHHHHHhcCCh
Q 036199 608 AVAILLCLCSQRD 620 (710)
Q Consensus 608 A~~aL~~Lc~~~~ 620 (710)
.+.+|..++..++
T Consensus 254 il~~L~~l~~~~~ 266 (618)
T 1w63_A 254 ILRLLRILGRNDD 266 (618)
T ss_dssp HHHHHHHHTTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 9999888887654
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.46 E-value=0.00092 Score=67.16 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=122.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhh-ccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLR-DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~-s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..+.+.+|..+..|+..|..+++..+..... .-..+++.|...|. . .+..++..|+.+|..++..-.....-.-
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKD----SNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6777889999999999999998874321110 01245666666773 4 7899999999999998643211111123
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc-
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH- 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~- 543 (710)
...+|.|+..+++... ++.|..+|..+...... ...+|.|...|.+.++.++..++..|..+.........
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 4578899999887765 36788888877653321 23578899999999999999999999996543221111
Q ss_pred -cccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 544 -IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 544 -iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
-.-...+|.|+.+|.| +.++..|..+|..++.
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1113678888888965 4678888888888875
No 128
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.43 E-value=0.0012 Score=66.21 Aligned_cols=177 Identities=10% Similarity=0.072 Sum_probs=125.1
Q ss_pred HHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccccccchHHHHHHhc-cCcHH--HHHHHHHHHhccCchhhHH
Q 036199 427 PLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLNEDLFSLLASFLH-SAAAT--EETLAILVALSSYAYFISK 502 (710)
Q Consensus 427 ~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~~gaI~~LV~lL~-s~~~~--~~Aa~~L~~Ls~~~~nk~~ 502 (710)
.+.+.+.+ .+...+..|+..|..+... ...... .-...++.|...|. +.+.. ..|+.+|..|+..-. ..
T Consensus 19 ~l~~~l~s----~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--~~ 91 (242)
T 2qk2_A 19 DFYDKLEE----KKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--KR 91 (242)
T ss_dssp THHHHHTC----SSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHhhhcc----CCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh--hh
Confidence 46666765 7889999999999998654 221111 12356788888884 66653 578888888773211 11
Q ss_pred Hh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc-C-
Q 036199 503 IV--ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-T- 576 (710)
Q Consensus 503 I~--~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~- 576 (710)
+. -...+|+|++.+.+.++.++..|..+|.++...... ...++.|...|.+ +.+...++..|..+.. .
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 21 134799999999999999999999999999864321 2356777777754 5678999999999654 3
Q ss_pred cc--hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 577 EH--ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 577 ~e--~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
++ ....+- ..+|.|+..|...++++|..|..+|..++..-
T Consensus 166 ~~~~~~~~l~---~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 166 PTALNKKLLK---LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GGGCCHHHHH---HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 22 233332 36899999999999999999999998887543
No 129
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.42 E-value=0.00033 Score=83.28 Aligned_cols=266 Identities=12% Similarity=0.072 Sum_probs=160.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCc-ccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC--cc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDN-QVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI--PY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~-~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~--~i 464 (710)
..+.+.+|..+..|+..+..++.... +.... .-...++.++..|.+ .+..++..|+.+|.+++....... .-
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKD----PSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred HHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 45567789999999999988886543 21111 113467888888865 678999999999999965422110 11
Q ss_pred ccccchHHHHHHhccCcH-HHHHHHHHHHhccCch------------hhHHHh--hhCcHHHHHHhhcCC---CHHHHHH
Q 036199 465 LNEDLFSLLASFLHSAAA-TEETLAILVALSSYAY------------FISKIV--ASGALASILNMLDSP---NGKFQEL 526 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~-~~~Aa~~L~~Ls~~~~------------nk~~I~--~~GaI~~LV~LL~~~---~~~~~~~ 526 (710)
.-...++.|+..|.+... +..|+++|.+++..-. ....+. -...+|.|+.++... +...+..
T Consensus 448 ~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 235678888888877522 3688888888774311 001111 135688888888654 3456677
Q ss_pred HHHHHHHhccCcccccccccccchhchHHhhcC-----------------chHHHHHHHHHHHHhcCcchHHHHHh-hcC
Q 036199 527 AIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD-----------------ATLAVSCLVILKNMCNTEHARVCVVE-TSG 588 (710)
Q Consensus 527 A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~-----------------~~~~~~al~iL~nLa~~~e~r~~i~~-~~g 588 (710)
+..+|..+...-.....-.-...++.++..+.. +++...++.+|..++..-.. ..+.. ...
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~ 606 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDV 606 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHH
Confidence 788887776533221111113445555554421 22456678888888774321 11111 024
Q ss_pred ChHHHHHHhhcCC--HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHhhhc
Q 036199 589 CLPSVAELLEIGS--EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLLRDV 660 (710)
Q Consensus 589 ~I~~Lv~lL~~~s--~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~LL~~l~~~ 660 (710)
.++.|+.++...+ ...++.|+.++..++..........+. .+++.|+..+.+. ++.++..|..++..+...
T Consensus 607 l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 5677777777653 367899999998887643211111111 2568888888776 788898898888766543
No 130
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.42 E-value=0.0016 Score=77.22 Aligned_cols=266 Identities=12% Similarity=0.086 Sum_probs=168.0
Q ss_pred hhhcCC--CHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-C-CC
Q 036199 388 SRLTEL--NWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-S-GI 462 (710)
Q Consensus 388 ~~L~s~--~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-~-k~ 462 (710)
..+.+. ++..+..++..+..+++.- ++.- .-.....++.++..|.+. ..+..++..|+.+|.++...-. + ..
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (876)
T 1qgr_A 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDK 211 (876)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566 7788888999998888652 1110 001134556666666541 1267889999999998753210 0 00
Q ss_pred ccccccchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc
Q 036199 463 PYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e 539 (710)
.......++.+...+.+.+.. ..++.+|..+... ...-........++.++..+.+.++.++..|+..+.+++....
T Consensus 212 ~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 000123566777777665542 4677777776632 2211111223678888888888889999999999888875320
Q ss_pred ------------c----c--ccccc---ccchhchHHhhcC---------chHHHHHHHHHHHHhcCcchHHHHHhhcCC
Q 036199 540 ------------I----Q--SHIAP---SEFLPKLVPFLKD---------ATLAVSCLVILKNMCNTEHARVCVVETSGC 589 (710)
Q Consensus 540 ------------n----~--~~iv~---aG~V~~Lv~lL~~---------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~ 589 (710)
. + ..... ...++.++..|.. ...+..|..+|..|+..-.. .+.. ..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~--~~ 367 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP--HV 367 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH--HH
T ss_pred hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH--HH
Confidence 0 1 01111 3456677777731 24577778888888763221 1222 35
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
++.+...+...+...|+.|+.+|..++.... +..... -..++|.|+..+.+.++.+|..|.+.|..+...-
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence 6667777778899999999999999987653 322222 2457899999999999999999999999877663
No 131
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.42 E-value=0.00096 Score=76.97 Aligned_cols=243 Identities=11% Similarity=0.109 Sum_probs=147.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++..+..|+..|..+.. ++ +. ...++.+.++|.+ .++-+++.|+.++.++..... . .+ .
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~----~~~~VRk~A~~al~~l~~~~p--~-~v-~ 178 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKT----SNSYLRKKAALCAVHVIRKVP--E-LM-E 178 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHS----CCHHHHHHHHHHHHHHHHHCG--G-GG-G
T ss_pred HhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCh--H-HH-H
Confidence 45667778888888888877752 11 11 3457778888876 789999999999999965332 1 12 3
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchh-hHHHhhhCcHHHHHHhhcC---------------CCHHHHHHHHH
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYF-ISKIVASGALASILNMLDS---------------PNGKFQELAIK 529 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~n-k~~I~~~GaI~~LV~LL~~---------------~~~~~~~~A~~ 529 (710)
+.++.+..+|.+.+.. ..|+.+|..++..... ...+ ...+|.|+.+|.+ .++-.+...+.
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 7888888999877653 5788888888865321 1111 3567878877642 36777777777
Q ss_pred HHHHhccCccc-ccccc-------------------------------------cccchhchHHhhc--CchHHHHHHHH
Q 036199 530 ILHNLSSDVDI-QSHIA-------------------------------------PSEFLPKLVPFLK--DATLAVSCLVI 569 (710)
Q Consensus 530 aL~nLs~~~en-~~~iv-------------------------------------~aG~V~~Lv~lL~--~~~~~~~al~i 569 (710)
+|..++..+.. ...+. ...++..|..+|. +++++..|+..
T Consensus 257 ~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~ 336 (618)
T 1w63_A 257 LLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTS 336 (618)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 77777653211 11000 0023444455553 23445555555
Q ss_pred HHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHH
Q 036199 570 LKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVS 649 (710)
Q Consensus 570 L~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~k 649 (710)
|..++... ..++. .....++..+...+..+|..|+.+|..++.... ... ++..|+..+.+.+...|+.
T Consensus 337 L~~i~~~~---p~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 337 LLKTVQTD---HNAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp HHHHHHHH---HHHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHhhC---HHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHH
Confidence 55554321 11222 234566666666677777777777777776542 111 2356666666667777777
Q ss_pred HHHHHHHhhh
Q 036199 650 ALELRRLLRD 659 (710)
Q Consensus 650 A~~LL~~l~~ 659 (710)
+...|..+..
T Consensus 405 ~v~~I~~la~ 414 (618)
T 1w63_A 405 CASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666654
No 132
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.40 E-value=0.00037 Score=86.73 Aligned_cols=263 Identities=15% Similarity=0.129 Sum_probs=167.8
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
.|.++.+.+.+.+..|...|....+.+...-..-.....++.|++.|.+ .+..++..|+.+|..++..-.. . .
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~~--~-~ 83 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKE--Y-Q 83 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCH--H-H
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCCH--H-H
Confidence 3477888899999999999988765532111001122467778888865 7899999999999998653211 0 1
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccCchhh------HHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFI------SKIVASGALASILNMLD-SPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk------~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~ 536 (710)
-...++.|+..|.++.. +..|+.+|..++..-... ..-.-...+|.|+..+. +++...+..|+.+|..++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 23466777777766554 345666666555211110 01112457899999998 5889999999999999984
Q ss_pred CcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHH
Q 036199 537 DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILL 613 (710)
Q Consensus 537 ~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~ 613 (710)
.-...-.-.-...++.|+..|.+ +.++..|+.+|..++..... .+. ...++.|+..|... ++..+..|+.+|.
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 21111000124466667777755 46789999999999875332 222 34678888888654 2345667788887
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.++...+..-.. .-..+++.++..+.+.++..|+.|...+..+.+.
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777644221000 1245788888888888888888888877755543
No 133
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.32 E-value=3.2e-05 Score=69.36 Aligned_cols=45 Identities=16% Similarity=0.373 Sum_probs=0.0
Q ss_pred ccccCCccccCCce-----------------e-cCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLMYDPV-----------------V-IESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m~DPV-----------------~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
-.|+||++-|.+|. + ++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 47999999998853 2 489999999999999986 779999988753
No 134
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.27 E-value=0.0012 Score=78.14 Aligned_cols=265 Identities=9% Similarity=0.059 Sum_probs=158.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccc-hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC--CCCcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVS-HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR--SGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r-~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~--~k~~i 464 (710)
..+.+.++.++..+++.+..++..-.... ..-.-...++.|+..|.+ ++.++..|+.+|.++..... ....+
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-----~~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-----HPKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHHHhcccccchhh
Confidence 45566778888888888877775422110 000112456667777754 38899999999998854321 11111
Q ss_pred --ccccchHHHHHHhccCc----HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC---------------CHHH
Q 036199 465 --LNEDLFSLLASFLHSAA----ATEETLAILVALSSYAYFISKIVASGALASILNMLDSP---------------NGKF 523 (710)
Q Consensus 465 --~~~gaI~~LV~lL~s~~----~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~---------------~~~~ 523 (710)
.-...++.|+.++.+.+ .+..++.+|..+.........-.-...+|.+++.|... ....
T Consensus 493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 572 (861)
T 2bpt_A 493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL 572 (861)
T ss_dssp GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHH
Confidence 12466788888887433 23567777777663222111111124677777776421 2456
Q ss_pred HHHHHHHHHHhccCcccccccccccchhchHHhhcC--c-hHHHHHHHHHHHHhcCcc-hHHHHHhhcCChHHHHHHhhc
Q 036199 524 QELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--A-TLAVSCLVILKNMCNTEH-ARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 524 ~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~-~~~~~al~iL~nLa~~~e-~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+..++.+|.+++..-+....-.-...++.++.++.+ . .+.+.++.++..++..-. .-.... ...++.|+..+..
T Consensus 573 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~ 650 (861)
T 2bpt_A 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQ 650 (861)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhcc
Confidence 678888888887532221111113456666777744 3 678888889998886321 111222 2368888888887
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC--HHHHHHHHHHHHHhhhc
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN--DKAKVSALELRRLLRDV 660 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt--~~~k~kA~~LL~~l~~~ 660 (710)
.++..+..|+.++..++......... .-..+++.|+..+.+.+ ...|..|...+..+...
T Consensus 651 ~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 651 VDSPVSITAVGFIADISNSLEEDFRR-YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp TTSHHHHHHHHHHHHHHHHTGGGGHH-HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhchhccc-hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 78889999999998887654321111 12345677777776654 67888888777655443
No 135
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0026 Score=64.61 Aligned_cols=187 Identities=12% Similarity=0.180 Sum_probs=122.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHH-HHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-CCC
Q 036199 386 DLSRLTELNWDCQCKVIEDYET-RLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-SGI 462 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~-Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-~k~ 462 (710)
|...+.+.+|..+..|+..|.. ++.+.+.....-.. ...+..|...|.. ..+..++..|+.+|..++..-. ...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---DANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHhcccccc
Confidence 3367888899999999999999 87654322110111 2446666667732 2688899999999999975433 222
Q ss_pred c-cccccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 036199 463 P-YLNEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV 538 (710)
Q Consensus 463 ~-i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~ 538 (710)
. -...-.+|.|+..+++... .+.+..+|..++.. +.....-.-...++.|+..|.+.++.++..++.+|..+....
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 2 2234578899999887654 24555666555531 111100001136888999999999999999999999888533
Q ss_pred ccc-ccc---ccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 539 DIQ-SHI---APSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 539 en~-~~i---v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
... ..+ +....+|.|.++|.| +++++.|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 221 111 125778888888866 4688888888888864
No 136
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.10 E-value=0.011 Score=58.64 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=144.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
+-|+..+..++..|+..|..+.+.-+.......-...++.+++++++ .|.++-..|+.+|.-+..+.. ...
T Consensus 40 ~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~----~dEkval~A~r~L~~LLe~vp-----L~~ 110 (265)
T 3b2a_A 40 ELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ----ENEKVTIKALRALGYLVKDVP-----MGS 110 (265)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS----TTHHHHHHHHHHHHHHHTTCC-----BCH
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHcCCC-----CCH
Confidence 66778889999999999999998854443333345678999999987 789999999999998876543 233
Q ss_pred c----chHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 468 D----LFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 468 g----aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
+ .+..|..++.+++. .++|+-.|..|...... .+.+..|.+++.+.+.+++..|.++|.|++...+++
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 3 45666667777765 37899999888433222 345678889999999999999999999999866554
Q ss_pred cccccccchhchHHhhc--CchHHHHHHHHHHHHhcCc---chHHHHHhhcCChHHHHHHhh--cCCHHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTE---HARVCVVETSGCLPSVAELLE--IGSEEDQEHAVAI 611 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~---e~r~~i~~~~g~I~~Lv~lL~--~~s~~~ke~A~~a 611 (710)
..+ .+++.-+-.+|+ |+.+.+.|+.+|..+.+.+ +....+.. |-..|+-|- .|.|..+..|-.+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~----~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK----ISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH----HHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH----HHHHHHHHHHhcCChhHHHHHHHH
Confidence 433 244455556663 4678999999999998843 33333332 444555333 5888887776544
No 137
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.94 E-value=0.00021 Score=64.95 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=79.9
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
....++.|+.+|++++.. ..|+.+|..+. . ..++.|+.+|.+.++.++..|+.+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----------~-~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----------D-EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS----------S-TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 456677888888776542 35555554332 1 137999999999999999999999988762
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
.++++.|+.+|.+ +.++..|+.+|..+.. ..+++.|+.++...++.++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3578999999954 5678889998888752 3457889999988899999999988753
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.90 E-value=9.4e-05 Score=67.29 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=84.2
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHH
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVC 582 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~ 582 (710)
....++.|+.+|.++++.++..|+.+|.++.. ..++.|+.+|.++ .++..|+.+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 35678889999988888888877777765531 1368999999664 568888888887753
Q ss_pred HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
...++.|+..|...++.++..|+.+|..+.. ..+++.|+.++.+.++.++..|...|.
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2358899999999999999999999988752 235789999999999999999887764
No 139
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.90 E-value=0.0074 Score=59.99 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=150.1
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-CCccccccchHHHHHHhccCcHH--HHHHHHHHHhc-cCc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-GIPYLNEDLFSLLASFLHSAAAT--EETLAILVALS-SYA 497 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~-k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~~ 497 (710)
.+.+..|+.+|.. .|..++.+|+.+|-++...... .....-...++.++.++++.+.+ -.|..+|..|- ..+
T Consensus 32 e~~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 32 KRALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence 3467888999966 7999999999999998654211 11112357899999999888764 47788876554 222
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 498 YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
-....+. -++.+|.+++.++++-....|+..|..|.. .-..-+++..|..++.+ ..+...++.+|.+++.
T Consensus 108 L~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 108 MGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp BCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 2222222 146788999999999999999999998831 12234667788888855 4567888889999987
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHH-------HHh-hcCCHHHH
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV-------KIS-VYGNDKAK 647 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv-------~L~-~~gt~~~k 647 (710)
..+....+ ...+.-+-.+|.+.++..++.|+.+|..+.+.+-. +.+++.+. .|. ..|.|..+
T Consensus 180 ~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~ 249 (265)
T 3b2a_A 180 SSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL-------ENVKIELLKISRIVDGLVYREGAPIIR 249 (265)
T ss_dssp GCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC-------SCCHHHHHHHHHHHHHGGGCSSCHHHH
T ss_pred ccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc-------HhHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 43322111 13455566788899999999999999999888621 23333332 234 57899999
Q ss_pred HHHHHHHHHhhh
Q 036199 648 VSALELRRLLRD 659 (710)
Q Consensus 648 ~kA~~LL~~l~~ 659 (710)
.+|...-..+-.
T Consensus 250 ~ka~~v~~~le~ 261 (265)
T 3b2a_A 250 LKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887766543
No 140
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.82 E-value=0.041 Score=63.40 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=147.9
Q ss_pred hhh--cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 388 SRL--TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 388 ~~L--~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
..| .+.++.++.+|+..+..+.+.+++.. ...++++.+.++|.+ .|+.++.+|+.+|..+..++.. .
T Consensus 153 ~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~~~--~-- 221 (621)
T 2vgl_A 153 KILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKNPE--E-- 221 (621)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCHH--H--
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhChH--H--
Confidence 445 56789999999999999988766532 235899999999965 7899999999999998654321 0
Q ss_pred cccchHHHHHHhc----cC-------------cH--HHHHHHHHHHhccC--chhhHHHhhhCcHHHHHHhhc-CC----
Q 036199 466 NEDLFSLLASFLH----SA-------------AA--TEETLAILVALSSY--AYFISKIVASGALASILNMLD-SP---- 519 (710)
Q Consensus 466 ~~gaI~~LV~lL~----s~-------------~~--~~~Aa~~L~~Ls~~--~~nk~~I~~~GaI~~LV~LL~-~~---- 519 (710)
-...++.++..|. .+ +. +......|..++.. ++.+..+.+ .+..++..+. ..
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK 299 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence 1234555555443 22 11 12445555555542 233332221 3333443321 11
Q ss_pred ----C--HHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcCChH
Q 036199 520 ----N--GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLP 591 (710)
Q Consensus 520 ----~--~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~ 591 (710)
+ ..+.-.|+.++..+...++- ...++..|..+|. +++++-.++..|..++........+. ....
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~~~~~-----~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~---~~~~ 371 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDSEPNL-----LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK---THIE 371 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH---TTHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH---HHHH
Confidence 2 26667788888888632221 1246777888884 45778888999998887543223333 3577
Q ss_pred HHHHHhh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 592 SVAELLE-IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 592 ~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.++..|. ..+..++..|+.+|..++..+ +...+ +.-|...+.+.+...++.+..-+.
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMCDRS--NAQQI-----VAEMLSYLETADYSIREEIVLKVA 429 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HHHHH-----HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHcChh--hHHHH-----HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888 888999999999999998653 33333 234444444455555544444333
No 141
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.016 Score=58.79 Aligned_cols=176 Identities=10% Similarity=0.110 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHH-HhccCCCCCc--ccc-ccchHHHHHHh-ccCcH--HHHHHHHHHHhccCchhh-HHHh-h--hC
Q 036199 439 HDSRAQRIGCRLLLA-FVSKNRSGIP--YLN-EDLFSLLASFL-HSAAA--TEETLAILVALSSYAYFI-SKIV-A--SG 507 (710)
Q Consensus 439 ~d~~~q~~A~~~L~n-L~~~~~~k~~--i~~-~gaI~~LV~lL-~s~~~--~~~Aa~~L~~Ls~~~~nk-~~I~-~--~G 507 (710)
.+...+..|+..|.. ++... .+.. ..+ ...+..|...| +..+. ...|+.+|..|+..- + ..+. . .-
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--~~~~f~~~y~~~ 104 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL--KTPGFSKDYVSL 104 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--CTTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--ccccccHHHHHH
Confidence 678888999999999 86432 1222 122 35677788888 55554 357888888777311 1 1121 1 23
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcch-HHHH
Q 036199 508 ALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA-RVCV 583 (710)
Q Consensus 508 aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~-r~~i 583 (710)
.+|++++.+.+..+.++..+..+|.+++.+- .+...-.-...++.|+..|.+ +.+.+.++..|..++..... ...+
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 6899999999988999999999998888532 111100012366677777754 56788899999888863221 0122
Q ss_pred H-hh-cCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 584 V-ET-SGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 584 ~-~~-~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
. .- ...+|.|.+.+...++.+|+.|..+|..++.
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 11 3678999999999999999999999988763
No 142
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.51 E-value=0.019 Score=71.25 Aligned_cols=261 Identities=13% Similarity=0.087 Sum_probs=156.5
Q ss_pred hhhc-CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLT-ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~-s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..+. +.++..+..|+..+..++......-.. .-...++.|+..|.+ .+..++..|+.+|..++....... -
T Consensus 140 ~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~~~~~~---~ 211 (1230)
T 1u6g_C 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGNIV---F 211 (1230)
T ss_dssp HHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC-------C
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhcCHHH---H
Confidence 3344 356788899999998888643321110 012344444444443 678999999999999865432221 2
Q ss_pred ccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 467 EDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIV--ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~--~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
...++.|+..|.+.. .+..++.++..++..... .+. -...+|.++..+.+.+++++..|+.++..++..-...
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 356888888886542 224566666666532111 222 2568999999998888889999999988887532111
Q ss_pred cccccccchhchHHhhcC---------------------------------------chHHHHHHHHHHHHhcC-cchHH
Q 036199 542 SHIAPSEFLPKLVPFLKD---------------------------------------ATLAVSCLVILKNMCNT-EHARV 581 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~---------------------------------------~~~~~~al~iL~nLa~~-~e~r~ 581 (710)
..-.-...+|.++..+.. ..++..|+.+|..++.. ++.-.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 000012234444443320 12355677888888763 22223
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh----------------HHHH--HHHhCCchHHHHHHhhcCC
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD----------------QYCK--LVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~----------------~~~~--~v~~~G~v~~Lv~L~~~gt 643 (710)
.+.. ..++.|+..+...++.++..|+.+|..++.... .... .-.-..+++.+...+.+.+
T Consensus 370 ~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~ 447 (1230)
T 1u6g_C 370 EFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS 447 (1230)
T ss_dssp HHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC
T ss_pred HHHH--HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC
Confidence 3333 467888887777788899999998877764210 0001 1111234566666788899
Q ss_pred HHHHHHHHHHHHHhhhc
Q 036199 644 DKAKVSALELRRLLRDV 660 (710)
Q Consensus 644 ~~~k~kA~~LL~~l~~~ 660 (710)
++.|..+..+|..+-..
T Consensus 448 ~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888888765544
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.43 E-value=0.043 Score=57.57 Aligned_cols=169 Identities=13% Similarity=0.118 Sum_probs=119.2
Q ss_pred HHHHhccCcHH--HHHHHHHHH-hccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc-ccc
Q 036199 473 LASFLHSAAAT--EETLAILVA-LSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA-PSE 548 (710)
Q Consensus 473 LV~lL~s~~~~--~~Aa~~L~~-Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv-~aG 548 (710)
+++-|.+++.. ..+.--|.. ++.+......++..+++..|+++..+++...+..+++||.+|-.+.+.-..++ ...
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 33444444332 355555554 55678899999999999999999999999999999999999998766665555 456
Q ss_pred chhchHHhhcC--chHHHHHHHHHHHHhcCcc-hHHHHHhh------c-C--ChHHHHHHhh---cCCHHHHHHHHHHHH
Q 036199 549 FLPKLVPFLKD--ATLAVSCLVILKNMCNTEH-ARVCVVET------S-G--CLPSVAELLE---IGSEEDQEHAVAILL 613 (710)
Q Consensus 549 ~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e-~r~~i~~~------~-g--~I~~Lv~lL~---~~s~~~ke~A~~aL~ 613 (710)
.|..|..++.+ ..+...|+++|..++...+ +...+.+. . | -.+.|+.+|. .++.+.+.+|...+-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 77888888854 4678999999999988544 43333221 1 1 2779999997 689999999998875
Q ss_pred HHhcCCh--H----HHHHHHhCCchHHHHHHhhc
Q 036199 614 CLCSQRD--Q----YCKLVMNEGVIPSLVKISVY 641 (710)
Q Consensus 614 ~Lc~~~~--~----~~~~v~~~G~v~~Lv~L~~~ 641 (710)
.+...-+ + ....+.+.|+-..+...+..
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 5544322 2 23344566766666664443
No 144
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.41 E-value=0.0033 Score=51.43 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=37.6
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCCCCCccCC
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPKTKMKLVC 315 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~ 315 (710)
-.|+||.+++..=+.- .|||.|=..||.+||.. +..+||.|++....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5699999988743332 79999999999999975 34899999987653
No 145
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.32 E-value=0.096 Score=60.26 Aligned_cols=244 Identities=10% Similarity=0.105 Sum_probs=152.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHh--hccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFL--RDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL--~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
..|.+.++-.+.-|+..|..+.. ++ ++ ...++.+.+.| .+ .++-+++.|+.++.++..... ..+.
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d----~~~~VRK~A~~al~kl~~~~p--~~~~ 184 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGD----TMDSVKQSAALCLLRLYRTSP--DLVP 184 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSS----SCHHHHHHHHHHHHHHHHHCG--GGCC
T ss_pred HhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhCh--hhcC
Confidence 45667788888888888877632 22 11 24566677777 44 789999999999999965332 1222
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc----CC-------------CHHHHHH
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLD----SP-------------NGKFQEL 526 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~----~~-------------~~~~~~~ 526 (710)
..+.++.|..+|.+.+.. .+|+.+|..++.... ..+ ...+|.+++.|. .+ ++-.+..
T Consensus 185 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 185 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 258999999999877653 577888888774321 111 134555555442 22 5677877
Q ss_pred HHHHHHHhccCc--ccccccccccchhchHHhhcC-------------chHHHHHHHHHHHHhcCcchHHHHHhhcCChH
Q 036199 527 AIKILHNLSSDV--DIQSHIAPSEFLPKLVPFLKD-------------ATLAVSCLVILKNMCNTEHARVCVVETSGCLP 591 (710)
Q Consensus 527 A~~aL~nLs~~~--en~~~iv~aG~V~~Lv~lL~~-------------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~ 591 (710)
.+..|..++..+ +....+. +.++.++..+.+ ..+.-.|+.++..+...++ +.. .++.
T Consensus 261 il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~~--~~~~ 332 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN----LLV--RACN 332 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HHH--HHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH----HHH--HHHH
Confidence 888887777532 2222221 122223322211 1456667777777754332 222 3567
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhh
Q 036199 592 SVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 592 ~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~~l~~ 659 (710)
.|..+|.+.++..|-.|+..|..++...+. ...+ ......++..+. +.+...|.+|..+|..+.+
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 888889888999999999999999987642 1122 123456666666 7778888888888766543
No 146
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.23 E-value=0.17 Score=48.48 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=139.3
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCc-HH--HHHHHHHHHhccCch
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAA-AT--EETLAILVALSSYAY 498 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~-~~--~~Aa~~L~~Ls~~~~ 498 (710)
..++..++.+|.. .--.+|.||+.++.+++..-. -..+..+..|+.+|+... .. ..-+.++.-++..
T Consensus 31 ~~~l~~lI~~LDD----DlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-- 100 (253)
T 2db0_A 31 ESVLKKLIELLDD----DLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-- 100 (253)
T ss_dssp HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcc----HHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--
Confidence 3578889999965 346799999999999866432 123445666666665433 21 4555666555521
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCc
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTE 577 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~ 577 (710)
+..++ .+.+|.|..=.+-|++..+-+-..+|..+.. +|+- -.+++.-+..++++++-.++ +.+|.-++.-.
T Consensus 101 -~Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltskd~~Dk-l~aLnFi~alG 172 (253)
T 2db0_A 101 -KPELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSKNREDK-LTALNFIEAMG 172 (253)
T ss_dssp -CHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCSSHHHH-HHHHHHHHTCC
T ss_pred -CHHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCChHHH-HHHHHHHHHHh
Confidence 11121 2456777777788999999999999988874 3332 23456667788887775555 55666666644
Q ss_pred chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 578 e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
++...-+. -.+|.|..+|..++.-++..|+.+|.+++..++..+..+. .-++=..+.++-++.+...-|..
T Consensus 173 en~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 173 ENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 44434433 3689999999999999999999999999999987666543 22333456666666665555443
No 147
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.14 E-value=0.035 Score=61.05 Aligned_cols=217 Identities=12% Similarity=0.078 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccccc--chHHHHHHhcc----------------CcH---HHHHHHHHHHhccCchh
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPYLNED--LFSLLASFLHS----------------AAA---TEETLAILVALSSYAYF 499 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i~~~g--aI~~LV~lL~s----------------~~~---~~~Aa~~L~~Ls~~~~n 499 (710)
...|--++.+|..+...+..|..+.+.+ .++.++.+++. +.. .-+++-+++-|+-.++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 3445566666766665555555554332 35666554431 111 13788889999988887
Q ss_pred hHHHhhhCcH--HHHHHhhcC-CCHHHHHHHHHHHHHhccCc-cc----ccccccccchhchHHhh-----cCchHHHHH
Q 036199 500 ISKIVASGAL--ASILNMLDS-PNGKFQELAIKILHNLSSDV-DI----QSHIAPSEFLPKLVPFL-----KDATLAVSC 566 (710)
Q Consensus 500 k~~I~~~GaI--~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~-en----~~~iv~aG~V~~Lv~lL-----~~~~~~~~a 566 (710)
...+...+.+ +.|+++++. ....+.+-++.+|.||.... ++ ...++-.|.+++++..| +|+++.+.-
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl 341 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI 341 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHH
Confidence 7777766644 778888854 45788899999999999754 12 12233223335566666 345543331
Q ss_pred HH-------HHHHHhcCcchHHHHHh------------------------h-cCChHHHHHHhhc----------CCHHH
Q 036199 567 LV-------ILKNMCNTEHARVCVVE------------------------T-SGCLPSVAELLEI----------GSEED 604 (710)
Q Consensus 567 l~-------iL~nLa~~~e~r~~i~~------------------------~-~g~I~~Lv~lL~~----------~s~~~ 604 (710)
-. ....|++-++...++.. . -..+..|+++|.+ .++..
T Consensus 342 ~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~ 421 (480)
T 1ho8_A 342 SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKII 421 (480)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcce
Confidence 11 12222322333333321 0 1246788888973 25666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 605 QEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 605 ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
...|+.=+..++.+.|.-+..+-+.|+=..++.|+.+.++.+|..|...++-+
T Consensus 422 laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 422 IQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred EEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 77777778888988888888999999999999999999999999999888744
No 148
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.83 E-value=0.0082 Score=46.95 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=38.9
Q ss_pred cccccCCccccCCceecCCCC-----ccchhhHHHHhh-hCCCCCCCCCCccC
Q 036199 268 VFKCPLSLRLMYDPVVIESGQ-----TFERMWIQKWFE-EGNHTCPKTKMKLV 314 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~-----ty~r~~I~~w~~-~g~~~cP~t~~~l~ 314 (710)
.-.|.||++-..+|.+.+|.. -|=+.|+++|+. +++.+||.|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 346999998888898888653 677999999998 47889999998765
No 149
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.76 E-value=0.28 Score=59.00 Aligned_cols=247 Identities=13% Similarity=0.161 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHccCcccc---hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHH
Q 036199 399 CKVIEDYETRLEHDNQVS---HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLAS 475 (710)
Q Consensus 399 ~~Al~~L~~Lak~~~~~r---~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~ 475 (710)
..|+..+..++....... .++. +.++.++..+.. .+..++..|..++..+...-. .. .-...+|.|+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~d----k~~~v~~aa~~~~~~~~~~~~-~~--a~~~~~~~~~~ 140 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGN----KDKEIQSVASETLISIVNAVN-PV--AIKALLPHLTN 140 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSC-GG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcC----CchHHHHHHHHHHHHHHHhCC-HH--HHHHHHHHHHH
Confidence 567777777775443211 1111 355666666544 567788888778777744221 11 12678999999
Q ss_pred HhccCcHH---HHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccch
Q 036199 476 FLHSAAAT---EETLAILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFL 550 (710)
Q Consensus 476 lL~s~~~~---~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V 550 (710)
.|.++... ..|+.++..|+... ...++. ...||.+-+.+.+-.+++++.|..++-.+|..-+|+.- ...|
T Consensus 141 ~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~ 215 (986)
T 2iw3_A 141 AIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFI 215 (986)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGH
T ss_pred HhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhH
Confidence 99877654 46777777776432 455553 67899999999888899999999999999976556543 3568
Q ss_pred hchHHhhcCchHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC--hHHHHHHH
Q 036199 551 PKLVPFLKDATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR--DQYCKLVM 627 (710)
Q Consensus 551 ~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~--~~~~~~v~ 627 (710)
|.|++.|.+|+-+.+|+..|..-.-..+-- ..+.- .+|.|.+-|...+...+..++-+.-|||.-- +.....+
T Consensus 216 ~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~---~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f- 291 (986)
T 2iw3_A 216 PSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSI---MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF- 291 (986)
T ss_dssp HHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHH---HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-
T ss_pred HHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHH---HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-
Confidence 999999988866666655554433322221 11111 3567777777778888999999999999854 2222222
Q ss_pred hCCchHHHHHHh-hcCCHHHHHHHHHHHHHhhhccCC
Q 036199 628 NEGVIPSLVKIS-VYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 628 ~~G~v~~Lv~L~-~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
=.-.+|-|-... .-..|++|+.|...+..|.+....
T Consensus 292 ~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 292 LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 234566665543 446899999999999988877543
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.19 E-value=0.15 Score=55.95 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHccCcccchhcccC--CcHHHHHHHhhcccc-------------CCCHHHHHHHHHHHHHHhccCC
Q 036199 395 WDCQCKVIEDYETRLEHDNQVSHSLSST--NFVEPLIRFLRDARD-------------LHDSRAQRIGCRLLLAFVSKNR 459 (710)
Q Consensus 395 ~e~q~~Al~~L~~Lak~~~~~r~~I~~~--G~I~~LV~lL~s~~~-------------~~d~~~q~~A~~~L~nL~~~~~ 459 (710)
.+.+.-++..+..++. .++.|..+.+. +.++.++.++....+ ....+.|-+++.++.-++-+..
T Consensus 182 ~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 3445556777776665 35677766543 357888776654311 1135667888888888754432
Q ss_pred CCCccccccc--hHHHHHHhccCcHH---HHHHHHHHHhccCc--h---hhH-HHhhhCcHHHHHHhhcC---CCHHHHH
Q 036199 460 SGIPYLNEDL--FSLLASFLHSAAAT---EETLAILVALSSYA--Y---FIS-KIVASGALASILNMLDS---PNGKFQE 525 (710)
Q Consensus 460 ~k~~i~~~ga--I~~LV~lL~s~~~~---~~Aa~~L~~Ls~~~--~---nk~-~I~~~GaI~~LV~LL~~---~~~~~~~ 525 (710)
.-..+...+. ++.|+.+++....+ +-++++|.||.... . ... .++..++ +++++.|.. .|++..+
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 1122223343 36777778766543 57999999998643 1 112 2333444 567777743 3566554
Q ss_pred HHHHHHH-------HhccC------------------------cccccccccc--cchhchHHhhcC------------c
Q 036199 526 LAIKILH-------NLSSD------------------------VDIQSHIAPS--EFLPKLVPFLKD------------A 560 (710)
Q Consensus 526 ~A~~aL~-------nLs~~------------------------~en~~~iv~a--G~V~~Lv~lL~~------------~ 560 (710)
+--...- .|++. .+|..++-+. ..+..|+++|.+ +
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 4332222 22211 1244455542 367889999952 3
Q ss_pred hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036199 561 TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 561 ~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
.+..-|+.=++.++. .|+||..+-+ -|+=..++++|.+.+++++.+|+.++..+
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345556666777877 7999987766 68878888899999999999999887654
No 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.04 E-value=0.52 Score=56.23 Aligned_cols=197 Identities=9% Similarity=0.039 Sum_probs=127.1
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH---HHHHHHHHHHhccCchhh
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA---TEETLAILVALSSYAYFI 500 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk 500 (710)
+++.|...|.. .+....+.|+.+|..+.-... +..++..|+..+.+... .+.++..|..+.
T Consensus 473 v~e~L~~~L~d----d~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~------ 536 (963)
T 4ady_A 473 VYEALKEVLYN----DSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVGLALIN------ 536 (963)
T ss_dssp HHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh------
Confidence 46777887765 345555666667666533322 33466777776643322 234555554433
Q ss_pred HHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc---CchHHHHHHHHHHHHhcC
Q 036199 501 SKIVASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNT 576 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~ 576 (710)
++....++.+++.|. +.++-++..|+.++.--.....|. .+|..|+..+. +..++..|+..|+.++..
T Consensus 537 --~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 537 --YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp --TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred --CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC
Confidence 244567888888885 467777777777765444344442 35666676662 346777888888877654
Q ss_pred cchHHHHHhhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 577 EHARVCVVETSGCLPSVAELL-EIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL-~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.+ ..++.++.+| +.+++.+|..|+.+|-.+|.+++. ..++..|..++.+.++.++..|.-.|.
T Consensus 609 ~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 609 DY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 32 2467777744 468999999999999999987742 124567777888888888888887777
Q ss_pred Hhhhc
Q 036199 656 LLRDV 660 (710)
Q Consensus 656 ~l~~~ 660 (710)
.+--.
T Consensus 673 ~Ig~g 677 (963)
T 4ady_A 673 MILIQ 677 (963)
T ss_dssp HHSTT
T ss_pred HHhcC
Confidence 65533
No 152
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.71 E-value=0.28 Score=52.22 Aligned_cols=247 Identities=9% Similarity=0.032 Sum_probs=134.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
-+.+.+.+.++-.--.+..+++..++.- + ++..|.+=+.+ +++-.+-.|+.+|.++...+ +-..
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~~e~i--L----v~Nsl~kDl~~----~N~~iR~lALRtL~~I~~~~------m~~~ 139 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIAEDVI--I----VTSSLTKDMTG----KEDSYRGPAVRALCQITDST------MLQA 139 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTSSCGG--G----GHHHHHHHHHS----SCHHHHHHHHHHHHHHCCTT------THHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCHHHHH--H----HHHHHHhhcCC----CcHhHHHHHHHHHhcCCCHH------HHHH
Confidence 3456666666555556666666533211 1 23344444444 78899999999999984332 2345
Q ss_pred chHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc
Q 036199 469 LFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 469 aI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
..+.+.+.|.+.+.. ..|+-+...|.... ...+ .+.+..+-+++.+.++-++-+|+.+|+.+...+
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-------- 207 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-------- 207 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--------
Confidence 667777777777763 56666666665332 2222 368999999999999999999999999998643
Q ss_pred ccchhchHHhhcCchH--HHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHH
Q 036199 547 SEFLPKLVPFLKDATL--AVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 547 aG~V~~Lv~lL~~~~~--~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
..++..|+..+....+ .-.-+.+|..++.. ++.-.. .....++.|...|++.++.+.-.|+.++..+...+..
T Consensus 208 ~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~--~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~-- 283 (355)
T 3tjz_B 208 RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS--RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK-- 283 (355)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh--hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--
Confidence 1245566666644321 11123344444331 111001 1134556667778888999999999998887553321
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCCccccCCC
Q 036199 624 KLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFG 670 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~~~~~~~~ 670 (710)
.. ..++..|..++.+.++..|--|...|..+......-.+.|..
T Consensus 284 --~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~ 327 (355)
T 3tjz_B 284 --EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNL 327 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC----------------
T ss_pred --HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 11 334567777777888888888888777666554444443433
No 153
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.67 E-value=0.0082 Score=62.82 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=38.3
Q ss_pred cccccCCccccCC----cee----cCCCCccchhhHHHHhhhCC----------CCCCCCCCccCC
Q 036199 268 VFKCPLSLRLMYD----PVV----IESGQTFERMWIQKWFEEGN----------HTCPKTKMKLVC 315 (710)
Q Consensus 268 ~f~CPI~~~~m~D----PV~----~~~G~ty~r~~I~~w~~~g~----------~~cP~t~~~l~~ 315 (710)
...|+||...+.+ |-. ..|||.|-..||.+||.+.. .+||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3569999999988 533 36899999999999997521 469999998753
No 154
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.24 E-value=0.49 Score=52.75 Aligned_cols=231 Identities=13% Similarity=0.154 Sum_probs=147.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcc--cchhcccCCcHHHHHHHhhcc------ccCCCHHHHHHHHHHHHHHhccCC
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQ--VSHSLSSTNFVEPLIRFLRDA------RDLHDSRAQRIGCRLLLAFVSKNR 459 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~--~r~~I~~~G~I~~LV~lL~s~------~~~~d~~~q~~A~~~L~nL~~~~~ 459 (710)
..|-+..|+.+-.|+-.||.+.+.... .|..-......-.|+.+|.-+ .+..-.-+++.++.+|..+ .+-.
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp 259 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLI 259 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTS
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCC
Confidence 566778999999999999998876432 122111224455555555332 1122346788899888887 4322
Q ss_pred CCCccccccchHHHHHHhccCcHHH---HHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 460 SGIPYLNEDLFSLLASFLHSAAATE---ETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 460 ~k~~i~~~gaI~~LV~lL~s~~~~~---~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
.. ..++..|+..+..+. .+ .+.-.|..+ +..+. =.++++.++..|.+.+.+++..|+.+|..++
T Consensus 260 ~e-----~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 260 GP-----NDIIEQLVGFLDSGD-WQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp CS-----CCHHHHHTTGGGCSC-HHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred hh-----HHHHHHHHhhcCCCC-eeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 21 344555554333332 33 445555566 22222 2567889999999999999999999999888
Q ss_pred cCcccccccccccchhchHHhh----cC-c---hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHH
Q 036199 536 SDVDIQSHIAPSEFLPKLVPFL----KD-A---TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEH 607 (710)
Q Consensus 536 ~~~en~~~iv~aG~V~~Lv~lL----~~-~---~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~ 607 (710)
..+.++.|+..+ .+ . ..+...+..|+.|++.+.. ....+..||.|.-.+++.-..+|..
T Consensus 328 ----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 328 ----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp ----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred ----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHHH
Confidence 223455555444 32 2 2366678888888886631 1112467899999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhCCchHHH-HHHhhcCCHHHHHHHHHHHH
Q 036199 608 AVAILLCLCSQRDQYCKLVMNEGVIPSL-VKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 608 A~~aL~~Lc~~~~~~~~~v~~~G~v~~L-v~L~~~gt~~~k~kA~~LL~ 655 (710)
++.+|..+. .. .++..+ ..++...++.+++.+..+.+
T Consensus 395 VL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998777 11 123333 34577788888888887775
No 155
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.43 Score=48.57 Aligned_cols=179 Identities=12% Similarity=0.153 Sum_probs=107.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccc--h-hcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC-
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVS--H-SLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI- 462 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r--~-~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~- 462 (710)
.+|.+.+|..+.+|+++|..+........ . .+. -...++.+-..+.. .+..++..++.+|..++.......
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhhhhc
Confidence 67888999999999999988775433211 0 111 12334555556654 789999999999988865321110
Q ss_pred -----ccccccchHHHHH-HhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 036199 463 -----PYLNEDLFSLLAS-FLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNL 534 (710)
Q Consensus 463 -----~i~~~gaI~~LV~-lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nL 534 (710)
...-...++.|+. .|.++.. ...|..++..+........ ..++.++..+.+.++.++..++..|..+
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 0112345666665 3555543 2456666655542221111 1356677788899999999999999887
Q ss_pred ccCccccc---ccccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 535 SSDVDIQS---HIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 535 s~~~en~~---~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
...-..+. ...-..+++.+..+|.+ +++++.|..++..+-.
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 64211110 00112355667777754 5788888888877765
No 156
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.54 E-value=0.28 Score=52.24 Aligned_cols=201 Identities=13% Similarity=0.031 Sum_probs=96.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
.-|.+.++.++..|+-....+...+++.. .++++.+-+++.+ .++.++-+|+.+|..+..++ .
T Consensus 146 ~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~~d--------~ 208 (355)
T 3tjz_B 146 QAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASS----DNIMVQYHALGLLYHVRKND--------R 208 (355)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTC--------H
T ss_pred HHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcC----CCccHHHHHHHHHHHHHhhc--------h
Confidence 45667789999999998888887777632 2688888888876 78999999999999886543 2
Q ss_pred cchHHHHHHhccCcH-HHHH-HHHHHHhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAA-TEET-LAILVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~-~~~A-a~~L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.++..|+.-|..+.. .+-+ +..|..++..- ++ ..-.....++.|..+|++.++.+.-.|+.+|..|...+..
T Consensus 209 ~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---- 283 (355)
T 3tjz_B 209 LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---- 283 (355)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----
Confidence 266777777765421 1222 23333333211 10 0001234567777888899999999999999998753322
Q ss_pred ccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036199 545 APSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 545 v~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
.-.-++..|..+|. +++++--|+..|..++.... .+++ .+-..+..++..++......|+..|+.-
T Consensus 284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P---~~v~--~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP---SAVT--ACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc---HHHH--HHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 12455777888884 46777777777777766322 2222 2345667778888888888888777654
No 157
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.35 E-value=0.059 Score=46.08 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=37.4
Q ss_pred cccCCccccCCc-eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 270 KCPLSLRLMYDP-VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 270 ~CPI~~~~m~DP-V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.||+|.-....= -+++|+|.||-.|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 477777655443 3579999999999999998889999999987665
No 158
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.22 E-value=4.6 Score=48.57 Aligned_cols=216 Identities=12% Similarity=0.127 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHH--hhhCcHHHHHHhhcCC
Q 036199 442 RAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKI--VASGALASILNMLDSP 519 (710)
Q Consensus 442 ~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I--~~~GaI~~LV~LL~~~ 519 (710)
.....|+..|.++..+... ...+..+.+..|.+.+.+....+.|+.++..|+........+ .-.+.+|.+++.+.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNII-EHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCS-SSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHhcccc-ccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 3345666667776543311 222345788888888876543378888888888443221111 1136788888888877
Q ss_pred CHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCc-hH--HHHHHHHHHHHhcCcchHHHHHh-hcCChHHHH
Q 036199 520 NGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDA-TL--AVSCLVILKNMCNTEHARVCVVE-TSGCLPSVA 594 (710)
Q Consensus 520 ~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~-~~--~~~al~iL~nLa~~~e~r~~i~~-~~g~I~~Lv 594 (710)
...++..|..|+..+.. .+.+. + ..++|.|+..|.+. .+ ...|+.++..|+... ...+.. -...||.+-
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~ 181 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLS 181 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchH
Confidence 78888877777766653 11111 1 56678888888443 45 556788888888633 233322 145788888
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCC--h-------HHHHHHHh----------CCc---------------hHHHHHHhh
Q 036199 595 ELLEIGSEEDQEHAVAILLCLCSQR--D-------QYCKLVMN----------EGV---------------IPSLVKISV 640 (710)
Q Consensus 595 ~lL~~~s~~~ke~A~~aL~~Lc~~~--~-------~~~~~v~~----------~G~---------------v~~Lv~L~~ 640 (710)
+.+-...++++..|..++..+|.-- . .-...+.+ .+. +|.|..=+.
T Consensus 182 ~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~ 261 (986)
T 2iw3_A 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLN 261 (986)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred hhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence 8888889999999999999998521 0 11111221 111 333333355
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCc
Q 036199 641 YGNDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 641 ~gt~~~k~kA~~LL~~l~~~~~~~ 664 (710)
..+...|+++.-++.+|.+--+..
T Consensus 262 ~~~~~~~r~~~~~~~n~~~lv~~~ 285 (986)
T 2iw3_A 262 ERETGIKRKSAVIIDNMCKLVEDP 285 (986)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCH
T ss_pred cCcchhheeeEEEEcchhhhcCCH
Confidence 668888999999999998876654
No 159
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.00 E-value=0.057 Score=57.29 Aligned_cols=63 Identities=17% Similarity=0.417 Sum_probs=52.4
Q ss_pred cccccCCccccCCceec-CCCCc--cchhhHHHHhh-hCCCCCCCCCCccCCCCCcccHHHHHHHHH
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQT--FERMWIQKWFE-EGNHTCPKTKMKLVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~t--y~r~~I~~w~~-~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~ 330 (710)
.+.|||+...|..||-- .|.|. ||...+..... .+.-.||+|++.+...+|+.+..+...+.+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 48899999999999974 89886 88888777654 456779999999999999999888777653
No 160
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.86 E-value=4.1 Score=39.07 Aligned_cols=171 Identities=15% Similarity=0.283 Sum_probs=115.8
Q ss_pred cccchHHHHHHhccCc--HHHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccc
Q 036199 466 NEDLFSLLASFLHSAA--ATEETLAILVALSSY-AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~--~~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
+...+..++.+|+..- .+.||..++..++.. ++.-. -.+..|+-|+ .+.........+.++..++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~----- 99 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK----- 99 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHH-----
Confidence 4567888999998876 457999999888742 22111 1234444554 46667776667778877773
Q ss_pred cccccccchhchHHhh------cCchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFL------KDATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL------~~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
++...|.++|.+| .++.+.-....+|..++. +|+--..++ .-+..++.+.+...|-.|+..+..
T Consensus 100 ---i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~------rdi~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 100 ---EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV------RDFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp ---HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred ---hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHH------HHHHHHhcCCChHHHHHHHHHHHH
Confidence 2233444555554 456666667777887776 565544444 456667777788888888888877
Q ss_pred HhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 615 Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+.-+..++.. -.+|.|..|+.+++.-+|..|...|-++...
T Consensus 171 lGen~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 171 MGENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp CCTTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred HhccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 7766654332 3468999999999999999999998887654
No 161
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.61 E-value=0.056 Score=46.56 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=29.0
Q ss_pred CcccccCCcc-ccCCcee--cCCCCccchhhHHHHh
Q 036199 267 EVFKCPLSLR-LMYDPVV--IESGQTFERMWIQKWF 299 (710)
Q Consensus 267 ~~f~CPI~~~-~m~DPV~--~~~G~ty~r~~I~~w~ 299 (710)
+++.|+||.+ ...+||. +.||++||+.|++.|.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4678999996 4899999 9999999999999943
No 162
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.43 E-value=2.9 Score=50.24 Aligned_cols=216 Identities=6% Similarity=0.060 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCccccc-----cchHHHHH----HhccC---cH--HHHHHHHHHHhccCchhhHHHh
Q 036199 439 HDSRAQRIGCRLLLAFVSKNRSGIPYLNE-----DLFSLLAS----FLHSA---AA--TEETLAILVALSSYAYFISKIV 504 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~~~k~~i~~~-----gaI~~LV~----lL~s~---~~--~~~Aa~~L~~Ls~~~~nk~~I~ 504 (710)
.+...++.|+.++..++............ ...+.++. .|.++ .. +..|+++|..++..- ....
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-- 493 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-- 493 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--
Confidence 45678888888888887542211111111 33343333 34544 33 357888888877532 1111
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc---------ccccccc--ccchhchHHhhcCc-----h--HHHHH
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSSDVD---------IQSHIAP--SEFLPKLVPFLKDA-----T--LAVSC 566 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e---------n~~~iv~--aG~V~~Lv~lL~~~-----~--~~~~a 566 (710)
-...++.++..|.+.++.++..|+.||.+++...+ .+..+.. ...++.|+.++... . ..+.+
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 23468889998888889999999999999987422 1222221 23444444555442 1 23455
Q ss_pred HHHHHHHhcC--cchHHHHHhhcCChHHHHHHhh----c-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHh
Q 036199 567 LVILKNMCNT--EHARVCVVETSGCLPSVAELLE----I-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS 639 (710)
Q Consensus 567 l~iL~nLa~~--~e~r~~i~~~~g~I~~Lv~lL~----~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~ 639 (710)
+.+|..++.. ++-.. ... ..++.|+..+. + .++.....++.+|..++.........-...-++|.+..++
T Consensus 574 ~~al~~vv~~~~~~~~p-~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 574 MRSIFRVLQTSEDSIQP-LFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHTTTTGG-GHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh-HHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 6666655441 11111 111 13344444443 2 3566666778888777765221122334445678888887
Q ss_pred hcCCHHHHHHHHHHHHHhhhc
Q 036199 640 VYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 640 ~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+......+.+..++..+-+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHHHh
Confidence 776555666677776655544
No 163
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=90.95 E-value=0.17 Score=53.53 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=53.1
Q ss_pred CcccccCCccccCCcee-cCCCCc--cchhhHHHHhh-hCCCCCCCCCCccCCCCCcccHHHHHHHHH
Q 036199 267 EVFKCPLSLRLMYDPVV-IESGQT--FERMWIQKWFE-EGNHTCPKTKMKLVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~-~~~G~t--y~r~~I~~w~~-~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~ 330 (710)
-.+.|||+...|..|+- ..|.|. ||...+..... .+.-.||+|++.+...+|+.+..+...+.+
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 35889999999999997 488876 99888777655 456679999999999999998888777653
No 164
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.43 E-value=28 Score=41.55 Aligned_cols=224 Identities=9% Similarity=-0.000 Sum_probs=130.0
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-cCC---CHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-DLH---DSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-~~~---d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
+++..++..|+..|......... .++..|...|.+.. ..+ ...++..|+..|....-.. .+.
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS------~~e 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS------ANI 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC------CCH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC------CCH
Confidence 45667778888887766543221 15677788886521 001 1456666766666652222 134
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.+++.|..+|.+.+.. +.|+-+|..+-.... ...++..|+..+ .+.+..+++.++.+|..+...
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------- 538 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVGLALINYG------- 538 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence 6788999999866542 334444433211111 123466677665 455678888888888877632
Q ss_pred ccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH
Q 036199 545 APSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 545 v~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
+...++.+++.|. ...+...+....-.++-...|- ...|..|+..+. ..+..+|..|+.+|..+..+++
T Consensus 539 -~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 539 -RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp -CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred -ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 3356778888873 2334444333333333322111 123455555544 4678889999999988776663
Q ss_pred HHHHHHhCCchHHHHH-HhhcCCHHHHHHHHHHHHHhh
Q 036199 622 YCKLVMNEGVIPSLVK-ISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~-L~~~gt~~~k~kA~~LL~~l~ 658 (710)
..++.++. |+.++++.+|..|...|-++.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 23555655 456677888877777776664
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=88.57 E-value=1.3 Score=44.54 Aligned_cols=168 Identities=21% Similarity=0.247 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH---H----HHHHHHHHhccCc--hhhHHHhhhCcHHHHHH
Q 036199 444 QRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT---E----ETLAILVALSSYA--YFISKIVASGALASILN 514 (710)
Q Consensus 444 q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~---~----~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~ 514 (710)
..+|..+|..+++|.+.|..++++...--|.-+|+..+.. | .+.+++..|.+.+ +.-..+...+.||..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 3567777777889999999988998888888888766531 2 6888888888543 33334447899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCccccccccc-cc-------chhchHHhh-c--CchHHHHHHHHHHHHhcCcchHHHH
Q 036199 515 MLDSPNGKFQELAIKILHNLSSDVDIQSHIAP-SE-------FLPKLVPFL-K--DATLAVSCLVILKNMCNTEHARVCV 583 (710)
Q Consensus 515 LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~-aG-------~V~~Lv~lL-~--~~~~~~~al~iL~nLa~~~e~r~~i 583 (710)
.+..|+.-.|.-|.-++..+-.++.+-..+.. +. ++..+|.-+ . ++.+....+.+--.|+.++.+|.++
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999887776665543 22 222223222 2 3467888899999999999999988
Q ss_pred HhhcCChHH------HHHHhhcCCHHHHHHHHHHHHHH
Q 036199 584 VETSGCLPS------VAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 584 ~~~~g~I~~------Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
... +|. +...+ .+++..+..-...|.++
T Consensus 233 ~~~---LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQC---LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHH---SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HHh---CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 752 222 11222 35777777666666554
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.54 E-value=17 Score=36.37 Aligned_cols=180 Identities=11% Similarity=0.065 Sum_probs=107.1
Q ss_pred HHHhhccccCCCHHHHHHHHHHHHHHhccCCC---CCc-cc-cccchHHHHHHhccCcHH--HHHHHHHHHhccC---c-
Q 036199 429 IRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS---GIP-YL-NEDLFSLLASFLHSAAAT--EETLAILVALSSY---A- 497 (710)
Q Consensus 429 V~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~---k~~-i~-~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~---~- 497 (710)
-.-|.+ .+-..+..|+..|..+...... ... +. -....+.+-..+.+.+.. ..++.+|..+... .
T Consensus 15 ~e~l~s----k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 15 EERLTY----KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHTTC----SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHhccc----CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555 6788888999988887543211 111 01 123345566677766653 5677777655431 1
Q ss_pred --hhhHHHhhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHHH
Q 036199 498 --YFISKIVASGALASILN-MLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKN 572 (710)
Q Consensus 498 --~nk~~I~~~GaI~~LV~-LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~n 572 (710)
...........+|.|++ .|.+..+.++..|..+|..+........ -+++.++..+. ++.+...++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11122223567888886 4788889999999888887763222111 12344555553 46677777777777
Q ss_pred HhcC--cc--hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 573 MCNT--EH--ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 573 La~~--~e--~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
+-.. .. .-..... ..++.+..++.+.++.+|+.|..++..+...-
T Consensus 166 ~l~~fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHTTTTCCHHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCcCCchhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 6431 11 1111111 24567788888999999999999998887654
No 167
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=87.34 E-value=2.7 Score=43.58 Aligned_cols=136 Identities=17% Similarity=0.141 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccc--cchhchHHhhc--CchHHHHHHHHHHHHhcCc---chHHHHHhhcCChH
Q 036199 519 PNGKFQELAIKILHNLSSDVDIQSHIAPS--EFLPKLVPFLK--DATLAVSCLVILKNMCNTE---HARVCVVETSGCLP 591 (710)
Q Consensus 519 ~~~~~~~~A~~aL~nLs~~~en~~~iv~a--G~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~---e~r~~i~~~~g~I~ 591 (710)
+.+..+-.++++++|+-.++..+..+... -+++.+...+. +..++..+..++.|+|..- ...... ..++.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~---~~ll~ 236 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK---AQCLS 236 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH---HHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH---HHHHH
Confidence 45667889999999999988887766542 34444444443 3467778888888998721 111111 11334
Q ss_pred HHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 036199 592 SVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLL 657 (710)
Q Consensus 592 ~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l 657 (710)
.+..++.. .+.+..-.++.+|.+|...+.+..+.+..-|+-..+-.+... ...++.+.|+.+|.+|
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 44445543 588888889999999998876666777677776665555443 5788889999888754
No 168
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.24 E-value=0.51 Score=47.32 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=36.5
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCCCCCccCCC
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPKTKMKLVCQ 316 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~~ 316 (710)
..|.||.++..-=+.- .||+.|-+.|+.+|+.. ++..||.|+.+.+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4588888777644333 38999999999999975 467899999876553
No 169
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.59 E-value=16 Score=38.19 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=118.9
Q ss_pred HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-cccccc----c-cccchhchHHhhcCchHHHHHHHHHHHHhc
Q 036199 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHI----A-PSEFLPKLVPFLKDATLAVSCLVILKNMCN 575 (710)
Q Consensus 502 ~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~i----v-~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~ 575 (710)
.|...+.+..|+..|..=+-+.+++++.+..+|.... +++... . .-.++..|+.--.++++.-.|-.+|+....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 4456789999999999999999999999999887643 333222 1 233444444444667888889999999999
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC---chHHHHHHhhcCCHHHHHHHHH
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG---VIPSLVKISVYGNDKAKVSALE 652 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G---~v~~Lv~L~~~gt~~~k~kA~~ 652 (710)
++.-...|.. .+.+-.+.+.+..++=++...|...+..|-..........+... .+...-.|+.+++--+|+.+.+
T Consensus 153 ~e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 9888888887 57788999999999999999999999888777655444555433 3566677899999999999999
Q ss_pred HHHH
Q 036199 653 LRRL 656 (710)
Q Consensus 653 LL~~ 656 (710)
||.-
T Consensus 232 LLge 235 (341)
T 1upk_A 232 LLGE 235 (341)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9983
No 170
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=86.35 E-value=2.7 Score=42.23 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=114.8
Q ss_pred HHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhcc--CcccccccccccchhchHHhh
Q 036199 485 ETLAILVALSSYAYFISKIVASGALASILNMLDSPN-----GKFQELAIKILHNLSS--DVDIQSHIAPSEFLPKLVPFL 557 (710)
Q Consensus 485 ~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~--~~en~~~iv~aG~V~~Lv~lL 557 (710)
+|.+.|..++.+++.|..+.++...--|--.|+..+ +-.+-.+++++..|.. +++....+.+.++||..++.|
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 788888899999999999999887655666664433 3566778888888885 344556677899999999999
Q ss_pred cCc--hHHHHHHHHHHHHhcCcchHHHHHhhcC-------ChHHHHH-HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 036199 558 KDA--TLAVSCLVILKNMCNTEHARVCVVETSG-------CLPSVAE-LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVM 627 (710)
Q Consensus 558 ~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g-------~I~~Lv~-lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~ 627 (710)
..+ -...-|.-++..+-.++.|...+.++.. .+..+|. +.+..+++.-++.+.+-..|+.+. ..+..+.
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL~ 233 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREALR 233 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 543 3366677888888888888877765432 2223333 224579999999999999999887 4444433
Q ss_pred h-------CCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 628 N-------EGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 628 ~-------~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
+ .|-+..++ .+++.+|+.=..|+..+
T Consensus 234 ~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 234 QCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred HhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 2 22222222 34566666555555443
No 171
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=82.62 E-value=9.4 Score=45.76 Aligned_cols=218 Identities=12% Similarity=0.141 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcc----cCCcHHHHHH----HhhccccCCCHHHHHHHHHHHHHHhccCCCCCc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLS----STNFVEPLIR----FLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIP 463 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~----~~G~I~~LV~----lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~ 463 (710)
+.+|..+..|+..+..++........-+. .....+.++. .|.+.. ...+.++..|+.+|..++..- .+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~-~~-- 491 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL-TK-- 491 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS-CH--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC-CH--
Confidence 45788888888888888764321111010 0033343333 344311 127889999999999986642 11
Q ss_pred cccccchHHHHHHhccCcH--HHHHHHHHHHhccCch---------hhHHHhh--hCcHHHHHHhhcCCC--H-H--HHH
Q 036199 464 YLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAY---------FISKIVA--SGALASILNMLDSPN--G-K--FQE 525 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~---------nk~~I~~--~GaI~~LV~LL~~~~--~-~--~~~ 525 (710)
-.-...++.++..|.+++. +..|+.+|.+++...+ .+..+.. ...+..|+.++.... + . ..+
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 1234577888888877654 3689999999886321 2344432 456777777776641 1 1 234
Q ss_pred HHHHHHHHhccC-cccccccccccchhchHHhh----c---CchHHHHHHHHHHHHhcC--cchHHHHHhhcCChHHHHH
Q 036199 526 LAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFL----K---DATLAVSCLVILKNMCNT--EHARVCVVETSGCLPSVAE 595 (710)
Q Consensus 526 ~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL----~---~~~~~~~al~iL~nLa~~--~e~r~~i~~~~g~I~~Lv~ 595 (710)
.+..+|..+... .+..... -...++.|+..+ . ++.+...++.+|..++.. ++....+.+ ..+|.+..
T Consensus 572 ~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~ 648 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHH
Confidence 556666555431 1211111 113444555544 1 224556677777777763 344444443 46788888
Q ss_pred HhhcCCHHHHHHHHHHHHHHh
Q 036199 596 LLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 596 lL~~~s~~~ke~A~~aL~~Lc 616 (710)
+|........+.+..++..+.
T Consensus 649 iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHhhhHhhHHHHHHHHHHHH
Confidence 887655555666666655443
No 172
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=81.72 E-value=5.1 Score=39.68 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 561 TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
+....++.+|..|..+..|...+..++.+|..|+..|.+.++..+..|+.+|..+|..+
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 45778999999999999999999998899999999999999999999999999999765
No 173
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=81.44 E-value=3.5 Score=42.72 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=80.2
Q ss_pred HHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc-cccchhchHHhh---
Q 036199 484 EETLAILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA-PSEFLPKLVPFL--- 557 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv-~aG~V~~Lv~lL--- 557 (710)
--+++++.|+-.++..+..+.. ...+..+...+.+.+..++..+++.++|++..--+....- ..-++..+..++
T Consensus 166 ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~ 245 (304)
T 3ebb_A 166 LLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV 245 (304)
T ss_dssp HHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc
Confidence 3688888899888888887764 3456666667667788999999999999996321111110 011223333333
Q ss_pred cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHH
Q 036199 558 KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAIL 612 (710)
Q Consensus 558 ~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL 612 (710)
.+.+..-.++.+|++|...+.....+.+. -++...++-+.. ..+++.++|-.+|
T Consensus 246 ~d~EalyR~LvALGtL~~~~~~~~~lak~-l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 246 QDLEATFRLLVALGTLISDDSNAVQLAKS-LGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCChhHHHHHHH-cCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 35677888999999999865555555552 334444444433 3566666655443
No 174
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=81.41 E-value=5.8 Score=42.50 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HH-HHHH----------Hh
Q 036199 561 TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QY-CKLV----------MN 628 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~-~~~v----------~~ 628 (710)
.....++.+|..|..+..|...+..+..+|..|+..|.+.++.++..|+.+|..+|..+. .. ...+ .+
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e 214 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 214 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC
Confidence 457788999999999999999999989999999999999999999999999999997653 21 1111 22
Q ss_pred CCchHHHHHHhhc-CCHHHHHHHHHHHHHhhh
Q 036199 629 EGVIPSLVKISVY-GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 629 ~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~ 659 (710)
..-...++..+.+ .+..-+..+..++..+-.
T Consensus 215 ~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 215 VERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence 3346667776665 355555556666664443
No 175
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=74.58 E-value=12 Score=39.94 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 561 TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.....++.+|..|..+..|...+..+.++|..|+..|.+.++..+..++.+|..+|..+
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 45778999999999999999999998899999999999899999999999999999865
No 176
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=73.92 E-value=89 Score=32.55 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=137.5
Q ss_pred cccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc-----cccchHHHHHHhccCcHHHHHHHHHHH
Q 036199 419 LSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL-----NEDLFSLLASFLHSAAATEETLAILVA 492 (710)
Q Consensus 419 I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~-----~~gaI~~LV~lL~s~~~~~~Aa~~L~~ 492 (710)
+...+.+..|+..|.. -+-+.++.++.+..++.... .++...+ ....+..|+.--.+++..-.+-..|+.
T Consensus 74 i~~~dll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 74 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 3456888888888876 68899999999988886532 2222211 223333333333333333466667788
Q ss_pred hccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccccc---cchhchHHhhcCch--HHHHH
Q 036199 493 LSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIAPS---EFLPKLVPFLKDAT--LAVSC 566 (710)
Q Consensus 493 Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv~a---G~V~~Lv~lL~~~~--~~~~a 566 (710)
+..++.....|..++.+-.+.+.+..++-++..+|..++..|-..+ .-....... -.+...-.+|.+++ ....+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 8888888888888888999999999999999999999999886543 222333332 23555666776654 47889
Q ss_pred HHHHHHHhcCcchHHHHH---hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 567 LVILKNMCNTEHARVCVV---ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 567 l~iL~nLa~~~e~r~~i~---~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
+..|+.|-....+...+. ....-+..++.+|+..+..+|-.|..+.--.-.++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999988877766654 32445778888999999999999999875554444
No 177
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=73.63 E-value=41 Score=32.96 Aligned_cols=143 Identities=18% Similarity=0.220 Sum_probs=92.3
Q ss_pred hCcHHHHHHhhc----CC-------CHHHHHHHHHHHHHhccCccccccccc-ccchhchHHhhcCc--hHHHHHHHHHH
Q 036199 506 SGALASILNMLD----SP-------NGKFQELAIKILHNLSSDVDIQSHIAP-SEFLPKLVPFLKDA--TLAVSCLVILK 571 (710)
Q Consensus 506 ~GaI~~LV~LL~----~~-------~~~~~~~A~~aL~nLs~~~en~~~iv~-aG~V~~Lv~lL~~~--~~~~~al~iL~ 571 (710)
.||+..|+++|. .+ +......++.+|..|..+......++. .++|..|+..|..+ .+...++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 567777887773 11 345567888999998877766666654 67888888888554 55777889999
Q ss_pred HHhcCcc--h-HHHHHhh---------cCChHHHHHHhhcC-CHHHHHHHHHHHHHHhcCCh------HHHHHHHhCCch
Q 036199 572 NMCNTEH--A-RVCVVET---------SGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRD------QYCKLVMNEGVI 632 (710)
Q Consensus 572 nLa~~~e--~-r~~i~~~---------~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~~~~------~~~~~v~~~G~v 632 (710)
.+|..++ | ...+.+. ..-...+|+.+..+ +.+.+-.+...+-.+....+ .-+..+...|..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9998554 7 5544331 22456678877753 44444444433333443332 236777789998
Q ss_pred HHHHHHhhcCCHHHHH
Q 036199 633 PSLVKISVYGNDKAKV 648 (710)
Q Consensus 633 ~~Lv~L~~~gt~~~k~ 648 (710)
+.|-.+-...++....
T Consensus 202 ~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 202 QVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHCCCHHHHH
T ss_pred HHHHHHhccCCHHHHH
Confidence 8887776666665443
No 178
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=73.39 E-value=49 Score=33.32 Aligned_cols=172 Identities=14% Similarity=0.137 Sum_probs=104.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh---ccCCCCCcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV---SKNRSGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~---~~~~~k~~i 464 (710)
..|-+.++..+.+|++.|......+++ ..+. .+..+++.+.-...+.+..+...++.+|..+. .+...+..-
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 455566888888999998877655432 2222 22223332220011257888888888877763 233333322
Q ss_pred cc-ccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 465 LN-EDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 465 ~~-~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
.+ .-.+|.|+.=|.++.. ++.+-.+|..+.. ........+.+++-+.+.+.+.+..++..|..+-...+-.
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 22 3567888888866543 2344444444331 0112345777888888999999999988888775432221
Q ss_pred cccccccch---hchHHhhcCc--hHHHHHHHHHHHHh
Q 036199 542 SHIAPSEFL---PKLVPFLKDA--TLAVSCLVILKNMC 574 (710)
Q Consensus 542 ~~iv~aG~V---~~Lv~lL~~~--~~~~~al~iL~nLa 574 (710)
...++ |.+..++.|+ .+++.|+.++..+-
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 24578 9999999765 57777777776543
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=72.90 E-value=70 Score=33.95 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=94.8
Q ss_pred HHHhhhCcHHHHHHhhc-----------CCCHHHHHHHHHHHHHhccCccccccccc-ccchhchHHhhcC--chHHHHH
Q 036199 501 SKIVASGALASILNMLD-----------SPNGKFQELAIKILHNLSSDVDIQSHIAP-SEFLPKLVPFLKD--ATLAVSC 566 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~-----------~~~~~~~~~A~~aL~nLs~~~en~~~iv~-aG~V~~Lv~lL~~--~~~~~~a 566 (710)
..++ .+|+..|+++|. +.+......++.+|..|..+......++. ..+|..|+..|.. +.+...+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3444 667888888883 12346677888999999877766665554 6788999998855 4567788
Q ss_pred HHHHHHHhcCcc--h-HHHHHhh---------cCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCCh------HHHHHHH
Q 036199 567 LVILKNMCNTEH--A-RVCVVET---------SGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRD------QYCKLVM 627 (710)
Q Consensus 567 l~iL~nLa~~~e--~-r~~i~~~---------~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~------~~~~~v~ 627 (710)
+.+|..+|..++ | ...+.++ ..-...+|..|.. .+.+.+-.+...+-.+....+ ..+..+.
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999998553 3 5544331 2346778888876 355555444444444444432 2366777
Q ss_pred hCCchHHHHHHhhcCCHHH
Q 036199 628 NEGVIPSLVKISVYGNDKA 646 (710)
Q Consensus 628 ~~G~v~~Lv~L~~~gt~~~ 646 (710)
..|..+.+-.+-...++..
T Consensus 263 ~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 263 RLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HTTHHHHHHHHTTSCCHHH
T ss_pred HCChHHHHHHHhcCCChhH
Confidence 8999888877655545443
No 180
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=71.57 E-value=27 Score=41.66 Aligned_cols=212 Identities=11% Similarity=0.081 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-cCCCHHHHHHHHHHHHHHhcc-CCCCCccccccch
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-DLHDSRAQRIGCRLLLAFVSK-NRSGIPYLNEDLF 470 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~~gaI 470 (710)
.+|..+..|+..+..++..-.... ...++.++.+|..-. ...++.++..++.+|..++.. ..+.. .-..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA--YIPPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 467777788888888776533221 245666666553211 113688999999999988542 11111 224577
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCc--cccccc
Q 036199 471 SLLASFLHSAAATEETLAILVALSSYAYFISKIVA--SGALASILNMLDSP--NGKFQELAIKILHNLSSDV--DIQSHI 544 (710)
Q Consensus 471 ~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~~--en~~~i 544 (710)
+.|+..|+ ......|+.++.+++. ..+..+.. .+.+..|..++.++ +...+..+..++..+...- +.+...
T Consensus 549 ~~l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 549 NLLVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77887774 4445789999999983 33344442 45566677777763 5678888888888776431 222221
Q ss_pred ccccchhchHHhh----cC----chHHHHHHHHHHHHh---cCc-----c---------hHHHHHhhcCChHHHHHHhhc
Q 036199 545 APSEFLPKLVPFL----KD----ATLAVSCLVILKNMC---NTE-----H---------ARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 545 v~aG~V~~Lv~lL----~~----~~~~~~al~iL~nLa---~~~-----e---------~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+ ...+++++..+ .. ++........|..|+ ..- + .-..+. ...++.+..++..
T Consensus 626 ~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 626 L-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEM 702 (971)
T ss_dssp H-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHh
Confidence 1 23344454443 21 112233333333333 210 0 001112 2467777777754
Q ss_pred --CCHHHHHHHHHHHHHHhc
Q 036199 600 --GSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 600 --~s~~~ke~A~~aL~~Lc~ 617 (710)
.+....+.++.++..++.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 477899999999888654
No 181
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.62 E-value=5.9 Score=32.92 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=36.2
Q ss_pred ccccCCcccc-----CCceec--CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLM-----YDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m-----~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
-.|.||++=. -+|.+. .|+...||.|.+-=..+|+..||.|+.++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4699998631 234343 678999999999888899999999998875
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=67.04 E-value=26 Score=38.37 Aligned_cols=118 Identities=12% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHH
Q 036199 518 SPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVA 594 (710)
Q Consensus 518 ~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv 594 (710)
.|+...++.|+..|...-. .++- +..+|.+++++..|. .++..|+.-|-.+|.. +.... .+..|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l-----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k------iaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPEL-----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR------VADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGG-----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH------HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh------HHHHHH
Confidence 3455666666666555442 2222 223455666666443 4567777777777776 33222 345788
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 595 ELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 595 ~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
++|.+.++......-.+|..|-..++. |.+..|..-..+|.+.+|+++...|+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 888888888888887888777777654 44556655555677788888777663
No 183
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=61.91 E-value=61 Score=38.36 Aligned_cols=165 Identities=15% Similarity=0.160 Sum_probs=94.3
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh---cCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILNML---DSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD 559 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL---~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~ 559 (710)
+.|+.++..++..-.. .....++.++..+ .++++.++..++.+|..++.. .++. .. =..+++.|+..|.+
T Consensus 467 eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl~~l~~~l~~ 540 (963)
T 2x19_B 467 EALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVLPLVLHALGN 540 (963)
T ss_dssp HHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHHHHHHHHhCC
Confidence 5777777777732111 0112344444433 345788999999999988853 2221 11 13567777777878
Q ss_pred chHHHHHHHHHHHHhcCcchHHHHHhh-cCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHH
Q 036199 560 ATLAVSCLVILKNMCNTEHARVCVVET-SGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSL 635 (710)
Q Consensus 560 ~~~~~~al~iL~nLa~~~e~r~~i~~~-~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~L 635 (710)
+.++..|+.+|.+++.. .+..+... ...+..|..++.. .+...++.+..++..+...-+ +...... ..+++++
T Consensus 541 ~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~l~~~l 617 (963)
T 2x19_B 541 PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HSLISPY 617 (963)
T ss_dssp GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHH
Confidence 88999999999999952 22222211 1233444455554 367889998999888875442 3222222 2344444
Q ss_pred HHHh----hc-CCHHHHHHHHHHHHHh
Q 036199 636 VKIS----VY-GNDKAKVSALELRRLL 657 (710)
Q Consensus 636 v~L~----~~-gt~~~k~kA~~LL~~l 657 (710)
.... .+ .++..+.....++..+
T Consensus 618 ~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 618 IQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4432 22 2566666554444433
No 184
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=60.86 E-value=2.1 Score=29.16 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=12.4
Q ss_pred cccccCCccccCCce
Q 036199 268 VFKCPLSLRLMYDPV 282 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV 282 (710)
-|+||||+.-+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 499999998887773
No 185
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=60.82 E-value=18 Score=36.07 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=31.1
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALEL 653 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~L 653 (710)
.+.|+.++...+..++..++..| | .+.|..| .+....+++.|..-
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l-----------------~-~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHA-----------------S-LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHS-----------------C-HHHHHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcC-----------------C-HHHHHHc-cCCCHHHHHHHHHH
Confidence 45666677777777777777653 1 3566667 88888888877643
No 186
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=60.60 E-value=2.6 Score=27.41 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.7
Q ss_pred CCcccccCCccccCCc
Q 036199 266 PEVFKCPLSLRLMYDP 281 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP 281 (710)
|..|.||+|+.-|-||
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4578999999999887
No 187
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=56.63 E-value=65 Score=36.26 Aligned_cols=211 Identities=13% Similarity=0.110 Sum_probs=124.9
Q ss_pred hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cC--CCCCccccccchHHHHHHhc--------c-Cc---
Q 036199 417 HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KN--RSGIPYLNEDLFSLLASFLH--------S-AA--- 481 (710)
Q Consensus 417 ~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~--~~k~~i~~~gaI~~LV~lL~--------s-~~--- 481 (710)
.|..+ +.+.|+.-|-+ ..-+++.-|+.+|..+.. +. ..|....+.+..-.|+-+|. + ..
T Consensus 170 eWPfq--fcE~L~~DLFd----p~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAP 243 (800)
T 3oc3_A 170 ENVLD--FFEQISDNLLS----YEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAP 243 (800)
T ss_dssp CSGGG--TTHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCH
T ss_pred CCHHH--HHHHHHHHhcC----cchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeee
Confidence 44444 55555555544 678999999999999843 22 22222222233333333332 1 11
Q ss_pred HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc-cccchhchHHhhcC-
Q 036199 482 ATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA-PSEFLPKLVPFLKD- 559 (710)
Q Consensus 482 ~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv-~aG~V~~Lv~lL~~- 559 (710)
.+|.|+.+|..+ ..-... ..++..|+..+....=+++..++-.|..+ +..+. =.++++.++.-|.|
T Consensus 244 VRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc
Confidence 147888888777 322211 34566666666777778888888888888 22222 25667777777754
Q ss_pred -chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCH--HHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHH
Q 036199 560 -ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSE--EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV 636 (710)
Q Consensus 560 -~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~--~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv 636 (710)
.+++..|+.+|.-++ .++.... .+..+.+.|...++ .........|..||+.+.. .......+|.|.
T Consensus 312 DDDVRAVAAetLiPIA-~p~~l~~------LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~ 381 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFP-ITDSLDL------VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIF 381 (800)
T ss_dssp SHHHHHHHHHHHTTSC-CSSTHHH------HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTG
T ss_pred ccHHHHHHHHHhhhhc-chhhHHH------HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHH
Confidence 567888888888887 3322222 34455555553211 1133456677888877731 112236788888
Q ss_pred HHhhcCCHHHHHHHHHHHH
Q 036199 637 KISVYGNDKAKVSALELRR 655 (710)
Q Consensus 637 ~L~~~gt~~~k~kA~~LL~ 655 (710)
-.+......+|..+...|.
T Consensus 382 PFLRHtITSVR~AVL~TL~ 400 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVK 400 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTT
T ss_pred hhhcCCcHHHHHHHHHHHH
Confidence 8899998888887766554
No 188
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=55.19 E-value=32 Score=34.70 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=79.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHccCcccchhcc--c-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 390 LTELNWDCQCKVIEDYETRLEHDNQVSHSLS--S-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~--~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
+.+.+..+..++++.|..+...-.+.-..+. + .-++|.|+.-|.. ....++..+-.+|..+..- .--
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd----~k~~vR~~~r~il~~l~~v------~~~ 165 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGE----AKDNMRTSVRDIVNVLSDV------VGP 165 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHH------HCH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHH------CCH
Confidence 3456777777777777665432111111122 1 3478888888855 4455665555555544221 112
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcH---HHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGAL---ASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI---~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
...++.++.-+++.+.+ +.++..+..+-...... ...++ |.+..++.+.|..++..|+.++..+-
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34677788888777753 45655555543211111 23468 99999999999999999998887554
No 189
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=53.53 E-value=93 Score=36.74 Aligned_cols=157 Identities=10% Similarity=0.096 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhc---cCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHH
Q 036199 439 HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH---SAAA--TEETLAILVALSSY-AYFISKIVASGALASI 512 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~---s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~L 512 (710)
.+....+.++.++..++..-... ....++.++..|- ++.. +..+++++..++.. ..+... -..+++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHH
Confidence 56778888888888886532211 1234555665542 2222 35677777766642 112111 24678889
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCccccccccc--ccchhchHHhhcC----chHHHHHHHHHHHHhcC-c-chHHHHH
Q 036199 513 LNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP--SEFLPKLVPFLKD----ATLAVSCLVILKNMCNT-E-HARVCVV 584 (710)
Q Consensus 513 V~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~--aG~V~~Lv~lL~~----~~~~~~al~iL~nLa~~-~-e~r~~i~ 584 (710)
+..|.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++.. ......++.++..++.. + +......
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 988855 78899999999999942 2222321 2233334444442 24566677777777653 2 3444333
Q ss_pred hhcCChHHHHHHhh----c-CCHHHHHH
Q 036199 585 ETSGCLPSVAELLE----I-GSEEDQEH 607 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~----~-~s~~~ke~ 607 (710)
+ ..++.+...+. . .+++.+..
T Consensus 611 ~--~l~~~l~~~l~~~~~~~~~~~~~~~ 636 (963)
T 2x19_B 611 H--SLISPYIQQLEKLAEEIPNPSNKLA 636 (963)
T ss_dssp H--HHHHHHHHHHHHHHSSCSCHHHHHH
T ss_pred H--HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3 34555555443 2 25655553
No 190
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=53.09 E-value=2.1e+02 Score=30.25 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchH
Q 036199 484 EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL 562 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~ 562 (710)
..++.+|..+..+......+.. .++|..|+..|.+..+.++..++..|..+|..++.. | .
T Consensus 76 ~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~------G-------------~ 136 (386)
T 2bnx_A 76 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE------D-------------M 136 (386)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSST------T-------------H
T ss_pred HHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCC------C-------------h
Confidence 3677888888777666666654 688999999999999999999999999999654310 1 1
Q ss_pred HHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHhcCCh------HHHHHHHhCCchHHH
Q 036199 563 AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRD------QYCKLVMNEGVIPSL 635 (710)
Q Consensus 563 ~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~~~~------~~~~~v~~~G~v~~L 635 (710)
....+.++.+... ..+ ..-...||+.+..+ +.+.+-.+...+-.+....+ ..+..+...|..+.|
T Consensus 137 ~~~VL~Al~~~~~-------~~e-~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il 208 (386)
T 2bnx_A 137 NERVLEAMTERAE-------MDE-VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL 208 (386)
T ss_dssp HHHHHHHHHHHHH-------HHT-SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH-------hCc-hhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH
Confidence 1222333333211 112 34466778877743 44444444433333444332 247778889998888
Q ss_pred HHHhhcCCHHH
Q 036199 636 VKISVYGNDKA 646 (710)
Q Consensus 636 v~L~~~gt~~~ 646 (710)
-.+-..+++..
T Consensus 209 ~~Lr~~~~~~L 219 (386)
T 2bnx_A 209 QELREIENEDM 219 (386)
T ss_dssp HHHTTCCCHHH
T ss_pred HHHhccCChhH
Confidence 77765555543
No 191
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=52.10 E-value=65 Score=38.25 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=93.5
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh---c--CCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhh
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILNML---D--SPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFL 557 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL---~--~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL 557 (710)
+.|+.+|..++..-.... ...++.++.++ . +.++.++..|+.+|..++.. ..+... -..+++.|+..|
T Consensus 482 eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~~l~~~l 555 (971)
T 2x1g_F 482 EACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAINLLVRGL 555 (971)
T ss_dssp HHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHh
Confidence 577777777764211110 13344444433 3 34789999999999998852 122211 124556666666
Q ss_pred cCchHHHHHHHHHHHHhcCcchHHHHHhh-cCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchH
Q 036199 558 KDATLAVSCLVILKNMCNTEHARVCVVET-SGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIP 633 (710)
Q Consensus 558 ~~~~~~~~al~iL~nLa~~~e~r~~i~~~-~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~ 633 (710)
. +.+...|+.++.+++. +.+..+... ...+..|..++.. .+...++.+..++..+...-+ +...... ...++
T Consensus 556 ~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~ 631 (971)
T 2x1g_F 556 N-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVS 631 (971)
T ss_dssp H-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHH
T ss_pred C-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHH
Confidence 4 7889999999999995 334444332 2345566667776 367889999999888876421 2222211 12334
Q ss_pred HHHH----HhhcC--CHHHHHHHHHHHHHhhh
Q 036199 634 SLVK----ISVYG--NDKAKVSALELRRLLRD 659 (710)
Q Consensus 634 ~Lv~----L~~~g--t~~~k~kA~~LL~~l~~ 659 (710)
+++. +..+. ++..+..+...|..|..
T Consensus 632 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 632 PCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 4433 33333 44455566666655543
No 192
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=51.17 E-value=24 Score=31.89 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=55.0
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
++..|.+-|.++++.++-.|+.+|-.+..+. ......+.....+.-|+.+....++.+|+++..+++-...
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4667788888999999999998887766665 3456666666677778888777888999999998885554
No 193
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=47.94 E-value=31 Score=32.02 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=55.2
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~ 659 (710)
++..|.+-|.++++.++-.|+.+|-.+..+. ......+.....+.-|+.+... .++.+|+++..+++--..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999887777665 4567777777788888887765 567899999888875554
No 194
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=47.78 E-value=69 Score=32.93 Aligned_cols=132 Identities=13% Similarity=0.042 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhccCcccccccccccchhchHHhh---c-CchHHHHHHHHHHHHhc-CcchHHHHHhh-cCChHHHH
Q 036199 521 GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL---K-DATLAVSCLVILKNMCN-TEHARVCVVET-SGCLPSVA 594 (710)
Q Consensus 521 ~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL---~-~~~~~~~al~iL~nLa~-~~e~r~~i~~~-~g~I~~Lv 594 (710)
......|+..|.-+|.+-+.-.+|++.. .+.|-.++ . .+.+.+.|..++...-+ +|.....|... +..+..+.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3445566666666665544444555422 22232222 1 23578888888887766 67766666542 34444444
Q ss_pred HHhhc-------CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHhh
Q 036199 595 ELLEI-------GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLLR 658 (710)
Q Consensus 595 ~lL~~-------~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l~ 658 (710)
.-|.. .+...+..-+++|-.|...+... ....+..|..+.... .+.+|.|+..|+..+-
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 44433 35566778889999998886322 144567777776666 8999999999888544
No 195
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=47.48 E-value=26 Score=38.37 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=66.4
Q ss_pred HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchH
Q 036199 484 EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL 562 (710)
Q Consensus 484 ~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~ 562 (710)
+-|+..+-... ..++.. ..+|..+++|..+.+..++..|++.|..+|.+ ++.. .+++.|+++|...+-
T Consensus 46 ~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 46 RLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQLLQTDDS 114 (507)
T ss_dssp HHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHHHHhccch
Confidence 45666654333 233322 34688899999999999999999999999977 5533 345778888854322
Q ss_pred -----HHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHH
Q 036199 563 -----AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612 (710)
Q Consensus 563 -----~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL 612 (710)
+..++..|..+ ++ .+.+..|...+.++++.++|.++..|
T Consensus 115 ~E~~~V~~sL~sllk~--Dp---------k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKM--DA---------KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHHHHHHHHHHHHHHH--CH---------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--Ch---------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 33332222111 11 23455555556667777888877776
No 196
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=46.13 E-value=2.2e+02 Score=30.00 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=77.1
Q ss_pred HHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhc-cCcH
Q 036199 404 DYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH-SAAA 482 (710)
Q Consensus 404 ~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~-s~~~ 482 (710)
.|..+.-.++....-++..+++..+...... .+.+..+.+..+|+..+.... -...--...+|.++..+. ++..
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinY----pN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eD 339 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQY----PNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDD 339 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeec----CCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCc
Confidence 4556666667677777888899998888877 788999999999998754321 111113467888888886 3433
Q ss_pred H--HHHHHHHHHhccCch-hhHHHhhhCcHHHHHHhhc
Q 036199 483 T--EETLAILVALSSYAY-FISKIVASGALASILNMLD 517 (710)
Q Consensus 483 ~--~~Aa~~L~~Ls~~~~-nk~~I~~~GaI~~LV~LL~ 517 (710)
. -...+.|.|...+.. .|......|+|+.|-+.+.
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 2 377888888875554 4555557999999988773
No 197
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=44.00 E-value=34 Score=31.24 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=56.6
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhc------CCHHHHHHHHHHHHHhhhc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVY------GNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~------gt~~~k~kA~~LL~~l~~~ 660 (710)
++..|.+-|.++++.++-.|+.+|-.+..+. ......+.....+.-|+.+... .+..+|+++..+++--...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999988777765 4567788888888889888763 3678899888887755543
No 198
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=43.91 E-value=20 Score=30.36 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=39.5
Q ss_pred CCcccccCCccccCCceec--CCC----CccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 266 PEVFKCPLSLRLMYDPVVI--ESG----QTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~--~~G----~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
++.+.|||++++=..=|-+ +-| .-||..++.+-...|. .=|.++.+++...
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sM 81 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASI 81 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTT
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhh
Confidence 4569999999998888877 333 2588999999888765 4588888887654
No 199
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=43.51 E-value=37 Score=31.78 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=56.8
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhc------CCHHHHHHHHHHHHHhhhc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVY------GNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~------gt~~~k~kA~~LL~~l~~~ 660 (710)
++..|.+-|.++++.++-.|+.+|-.+..+. ......+.....+.-|+.+... .+..+|+++..+++--...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999988877776 3567778888888889888752 3578999999888855543
No 200
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=40.27 E-value=49 Score=30.23 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=55.3
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhc------CCHHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVY------GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~------gt~~~k~kA~~LL~~l~~ 659 (710)
++..|.+-|.++++.++-.|+.+|-.+..+.. .....+.....+.-|+.+... .+..+|++...+++-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 46678888889999999999998877776663 456777777788888888753 467889988888876554
No 201
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.53 E-value=65 Score=29.17 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=51.1
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCC-chHHHHHHhh-----cC---CHHHHHHHHHHHHHhhh
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEG-VIPSLVKISV-----YG---NDKAKVSALELRRLLRD 659 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G-~v~~Lv~L~~-----~g---t~~~k~kA~~LL~~l~~ 659 (710)
+..|.+-|...++..+-.|+.+|-.||.++. .....+.+.- .|..|.+..- .| ...+|.+|..|+.+|.+
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 4567777888899999999999999997774 4455554442 3344433311 22 24689999999999987
Q ss_pred ccCC
Q 036199 660 VAYS 663 (710)
Q Consensus 660 ~~~~ 663 (710)
....
T Consensus 131 ~~~~ 134 (140)
T 1vdy_A 131 EENG 134 (140)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6443
No 202
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=37.09 E-value=10 Score=27.61 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=11.5
Q ss_pred CCCCcccccCCcc
Q 036199 264 IIPEVFKCPLSLR 276 (710)
Q Consensus 264 ~~p~~f~CPI~~~ 276 (710)
.+|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5799999999985
No 203
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=36.98 E-value=1.2e+02 Score=36.73 Aligned_cols=134 Identities=18% Similarity=0.178 Sum_probs=68.6
Q ss_pred ccchHHHHHHhccCcH-HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC----CHHHHHHHHHHHHHh----ccC
Q 036199 467 EDLFSLLASFLHSAAA-TEETLAILVALSSYAYFISKIVASGALASILNMLDSP----NGKFQELAIKILHNL----SSD 537 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~-~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~----~~~~~~~A~~aL~nL----s~~ 537 (710)
..++..+.+++.++.. ...|+.+|..+..... -....+..+..++.++ ++..++.|.-++.+| |.+
T Consensus 355 ~~a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~~-----Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~ 429 (1056)
T 1lsh_A 355 SEALLFLKRTLASEQLTSAEATQIVASTLSNQQ-----ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 429 (1056)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666666665542 2345554443221110 1122455666666543 344555455444444 444
Q ss_pred cccccccccccchhchHHhh----cC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh-------cCCHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFL----KD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE-------IGSEED 604 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL----~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~-------~~s~~~ 604 (710)
...+ ....|+.+.+.| .. ..-...++.+|+|+.. + ..++.|..++. ....++
T Consensus 430 ~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-p----------~~l~~l~~~l~~~~~~~~~~~~rv 494 (1056)
T 1lsh_A 430 TVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-P----------NSIKKIQRFLPGQGKSLDEYSTRV 494 (1056)
T ss_dssp CSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-G----------GGHHHHHTTSTTSSSCCCCSCHHH
T ss_pred CCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-h----------hHHHHHHHhhcCccccccccchHH
Confidence 3333 234467776665 22 2335566778888754 2 23455555543 124566
Q ss_pred HHHHHHHHHHHhcCCh
Q 036199 605 QEHAVAILLCLCSQRD 620 (710)
Q Consensus 605 ke~A~~aL~~Lc~~~~ 620 (710)
+..|+.+|..+....+
T Consensus 495 r~aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 495 QAEAIMALRNIAKRDP 510 (1056)
T ss_dssp HHHHHHTTTTGGGTCH
T ss_pred HHHHHHHHHHhhhhch
Confidence 7778888877776553
No 204
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=36.46 E-value=12 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCCCCCCCCccCCCCCc-cc--HHHHHHHHHHHHHcCCCCCCCCCCC
Q 036199 303 NHTCPKTKMKLVCQSLT-PN--TAMKDLISKWCMNLCSSMNDLHVPL 346 (710)
Q Consensus 303 ~~~cP~t~~~l~~~~l~-pN--~~l~~~i~~w~~~~~~~~p~~~~p~ 346 (710)
+..||.|++.+.+..+. ++ ..-|..|++|...++. -|-...|+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L 48 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPL 48 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCC
Confidence 35799999998876555 32 3459999999999874 34333333
No 205
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=35.26 E-value=4.2e+02 Score=27.88 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=87.2
Q ss_pred HHHhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh---cCchHHHH
Q 036199 490 LVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL---KDATLAVS 565 (710)
Q Consensus 490 L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL---~~~~~~~~ 565 (710)
|.+|-.++ ....-++.+.+|..+-.++.-.+.+........|...|....-+.. --...+|.++..+ .+.++.-.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCCCcceEEe
Confidence 34555444 4455677899999999999999999999999988888743322211 1246778888887 45678888
Q ss_pred HHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-------CCHHHHHHHHHHHHH
Q 036199 566 CLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-------GSEEDQEHAVAILLC 614 (710)
Q Consensus 566 al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-------~s~~~ke~A~~aL~~ 614 (710)
-.+.|.|...+...-..+.-..|+|+.|-..+.. .+.--+..|+++..+
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 8999999998876655554447899998887653 244446667766544
No 206
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=34.98 E-value=44 Score=27.15 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=30.3
Q ss_pred CcccccCCccccCCceecCC----CCccchhhHHHHhh----hCCCCCCCC
Q 036199 267 EVFKCPLSLRLMYDPVVIES----GQTFERMWIQKWFE----EGNHTCPKT 309 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~----G~ty~r~~I~~w~~----~g~~~cP~t 309 (710)
..++|-+|.+-+.|-.-+.| +|.||--|-+..++ .+.-+||.-
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 45899999999999876644 79999555554443 344567765
No 207
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=32.07 E-value=14 Score=27.92 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=11.6
Q ss_pred CCCCcccccCCcc
Q 036199 264 IIPEVFKCPLSLR 276 (710)
Q Consensus 264 ~~p~~f~CPI~~~ 276 (710)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999985
No 208
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.51 E-value=16 Score=27.31 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.9
Q ss_pred CCCCCcccccCCcc
Q 036199 263 AIIPEVFKCPLSLR 276 (710)
Q Consensus 263 ~~~p~~f~CPI~~~ 276 (710)
..+|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 35799999999985
No 209
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.17 E-value=23 Score=35.40 Aligned_cols=130 Identities=6% Similarity=-0.013 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-CCCccccccchHHHHHH
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-SGIPYLNEDLFSLLASF 476 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-~k~~i~~~gaI~~LV~l 476 (710)
+.-++.-+|.++.+..- .+.+..++.... .+.++..+-.++.++.|+..+.. .+..+........++..
T Consensus 71 ~fP~lDllRl~~~~~~~-------~~~l~~~l~~~~---~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~ 140 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGL---GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFET 140 (253)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHT---TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHH
T ss_pred cchHHHHHHHHHcCCch-------HHHHHHHHHHhc---CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHH
Confidence 34455555555544332 233333333322 22467788889999999977765 44444444445555554
Q ss_pred hccC--------c--HHHHHHHHHHHhccCch-hhHHHhhhCcHHHHHHhhcC---------CCHHHHHHHHHHHHHhcc
Q 036199 477 LHSA--------A--ATEETLAILVALSSYAY-FISKIVASGALASILNMLDS---------PNGKFQELAIKILHNLSS 536 (710)
Q Consensus 477 L~s~--------~--~~~~Aa~~L~~Ls~~~~-nk~~I~~~GaI~~LV~LL~~---------~~~~~~~~A~~aL~nLs~ 536 (710)
+.+. + .+..++..++|++..-. .+. +......+++++.. .+.++.-.++.||.+|..
T Consensus 141 i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 141 IDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp SCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 4221 1 11356666789985311 111 12344556666542 367888888889988886
Q ss_pred Cccc
Q 036199 537 DVDI 540 (710)
Q Consensus 537 ~~en 540 (710)
.+..
T Consensus 218 ~~~~ 221 (253)
T 3gae_A 218 VEPT 221 (253)
T ss_dssp HSGG
T ss_pred CcHH
Confidence 4433
No 210
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=31.07 E-value=55 Score=32.47 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=22.2
Q ss_pred HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 036199 622 YCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL 654 (710)
.+..+...-..+.|..++.+....+|..+..-+
T Consensus 186 VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 186 VRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp HHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC
Confidence 333444334557788888999999988877643
No 211
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=30.09 E-value=3.5e+02 Score=32.58 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=47.8
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhc----cCcHH--HHHHHHHHHhccCc
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH----SAAAT--EETLAILVALSSYA 497 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~----s~~~~--~~Aa~~L~~Ls~~~ 497 (710)
.+..+..++.+.....++.+...++.++..++..-+..........++.+.+.|. +++.. ..++.+|.|+-.
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 4444555554421123344555555555555331111001112234555555543 33321 245555555542
Q ss_pred hhhHHHhhhCcHHHHHHhhcC-------CCHHHHHHHHHHHHHhc
Q 036199 498 YFISKIVASGALASILNMLDS-------PNGKFQELAIKILHNLS 535 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~-------~~~~~~~~A~~aL~nLs 535 (710)
...++.|..++.. ...+++..|+.||.++.
T Consensus 470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~ 506 (1056)
T 1lsh_A 470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA 506 (1056)
T ss_dssp --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG
T ss_pred --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh
Confidence 2346666666631 13466677777777766
No 212
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.72 E-value=7.5 Score=32.84 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=25.2
Q ss_pred ccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
..||.|.+.|. + ..|+.+|..|=+.+.. ...||.|+++|.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc--cccCcchhhHHH
Confidence 68999998764 2 2344446666322211 346999999875
No 213
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.56 E-value=1.3e+02 Score=27.80 Aligned_cols=86 Identities=7% Similarity=0.044 Sum_probs=63.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
.+|..+++.+|..|+.-|-.+.+.. ...+..|+...++..|++++.. ..++.++..++.+|......-.+.. +
T Consensus 59 krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~---~~~~~Vk~kil~li~~W~~~f~~~~---~ 132 (163)
T 1x5b_A 59 KRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKN---KAHPKVCEKLKSLMVEWSEEFQKDP---Q 132 (163)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHTTTCS---T
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHhcCCc---c
Confidence 6788889999999999998888874 4455678888999999999964 2578999999998888754322211 2
Q ss_pred ccchHHHHHHhcc
Q 036199 467 EDLFSLLASFLHS 479 (710)
Q Consensus 467 ~gaI~~LV~lL~s 479 (710)
-+.|..+...|+.
T Consensus 133 l~~i~~~Y~~Lk~ 145 (163)
T 1x5b_A 133 FSLISATIKSMKE 145 (163)
T ss_dssp THHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH
Confidence 3455555666653
No 214
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=28.42 E-value=1.6e+02 Score=30.18 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=95.4
Q ss_pred cchHHHHHHhccC------cH-H-HHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-
Q 036199 468 DLFSLLASFLHSA------AA-T-EETLAILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSS- 536 (710)
Q Consensus 468 gaI~~LV~lL~s~------~~-~-~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~- 536 (710)
..+..+..++++| +. . +.|+-.|..+|.+-++=.+|.. ...+..|+ +....++..++.|+++|.....
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 4566777778777 11 1 5889999999988877777775 34455555 3344567889999999887665
Q ss_pred Cccccccccc--ccchhchHHhhc----C-----chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC--CHH
Q 036199 537 DVDIQSHIAP--SEFLPKLVPFLK----D-----ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG--SEE 603 (710)
Q Consensus 537 ~~en~~~iv~--aG~V~~Lv~lL~----~-----~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~--s~~ 603 (710)
||.....+.+ ...|..+..-|. . ..+...-+++|..|..++. .+ . ..++..|.+++..+ ++.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~-~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-P-IYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC----CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-h-hccHHHHHHHHccCCCCHH
Confidence 4555554443 333333333331 1 1346667899999988762 12 1 45789999999888 999
Q ss_pred HHHHHHHHHHHHh
Q 036199 604 DQEHAVAILLCLC 616 (710)
Q Consensus 604 ~ke~A~~aL~~Lc 616 (710)
+|..++.++..+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999988886665
No 215
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.68 E-value=18 Score=26.99 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.6
Q ss_pred CCCCcccccCCcc
Q 036199 264 IIPEVFKCPLSLR 276 (710)
Q Consensus 264 ~~p~~f~CPI~~~ 276 (710)
.+|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5799999999975
No 216
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=27.06 E-value=20 Score=29.38 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=12.1
Q ss_pred CCCCcccccCCccc
Q 036199 264 IIPEVFKCPLSLRL 277 (710)
Q Consensus 264 ~~p~~f~CPI~~~~ 277 (710)
.+|+++.||+|+--
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999863
No 217
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.52 E-value=19 Score=27.24 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.5
Q ss_pred CCCCcccccCCcc
Q 036199 264 IIPEVFKCPLSLR 276 (710)
Q Consensus 264 ~~p~~f~CPI~~~ 276 (710)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5799999999985
No 218
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.46 E-value=90 Score=30.19 Aligned_cols=71 Identities=7% Similarity=0.059 Sum_probs=54.1
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~ 659 (710)
++..|.+-|.++++.++-.|+.+|-.+..+.. .....+.....+..|+.+..+ .+..+|+++..+++-...
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 35567778888999999999999988877763 456677777778888877654 457889988888875553
No 219
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.18 E-value=42 Score=29.19 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=38.3
Q ss_pred CCcccccCCccccCC-ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYD-PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~D-PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
|+-|.|..|...+.+ +.....|.-||+.+..+-+ .+.|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 567999999998876 6667889999999876654 4679999998775
No 220
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.02 E-value=27 Score=27.05 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=27.8
Q ss_pred hhccchhhhcC-CCc---hhhHHHHHHHHHHHHHHHHHHhcc
Q 036199 37 KVFPEIEAARP-RCS---SGVQALCLLNNAIGKAKSLLQYCS 74 (710)
Q Consensus 37 ll~pllEelr~-~~~---~~~~~l~~L~~~l~~ak~Ll~~c~ 74 (710)
-|+..+||+.. ..+ ....+.+.|.+.+..|+.|++.|.
T Consensus 15 ~LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 45566788863 222 235577789999999999999995
No 221
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.84 E-value=21 Score=28.35 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=12.0
Q ss_pred CCCCcccccCCccc
Q 036199 264 IIPEVFKCPLSLRL 277 (710)
Q Consensus 264 ~~p~~f~CPI~~~~ 277 (710)
.+|+++.||+|.--
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 58999999999863
No 222
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.28 E-value=98 Score=30.17 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=53.3
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~ 659 (710)
++..|.+-|.++++.++-.|+.+|-.+..+.. .....+.....+..|+.++.. ....+|+++..+++-...
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45677888889999999999998877766653 456667777777777777654 456899999998886554
No 223
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.13 E-value=37 Score=31.80 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
.+..+.||+|+.+..+ .-...||+|+.+-
T Consensus 135 ~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 135 IKKVYICPICGYTAVD--------------------EAPEYCPVCGAPK 163 (170)
T ss_dssp CSCEEECTTTCCEEES--------------------CCCSBCTTTCCBG
T ss_pred CCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCH
Confidence 3567889998877642 1234799998753
No 224
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=23.90 E-value=1.1e+02 Score=37.00 Aligned_cols=99 Identities=8% Similarity=0.016 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHhccCcccc-cccccccchhchHHhhcC-----ch--HHHHHHHHHHHHhcCcchHHHHHhhcCCh
Q 036199 519 PNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLPKLVPFLKD-----AT--LAVSCLVILKNMCNTEHARVCVVETSGCL 590 (710)
Q Consensus 519 ~~~~~~~~A~~aL~nLs~~~en~-~~iv~aG~V~~Lv~lL~~-----~~--~~~~al~iL~nLa~~~e~r~~i~~~~g~I 590 (710)
.+=...+.++.|+..++...... ..-.=..+++.|+.++.. +. +...++.+++..+.--........ ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence 46788999999999998643221 111123556677776642 22 233455666655541111111222 234
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 591 PSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 591 ~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
..|++.|....+.+++.|+++|..||...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 45555555567899999999999999753
No 225
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.16 E-value=26 Score=29.10 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=11.7
Q ss_pred CCCCcccccCCcc
Q 036199 264 IIPEVFKCPLSLR 276 (710)
Q Consensus 264 ~~p~~f~CPI~~~ 276 (710)
.+|+++.||+|+-
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999985
No 226
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=21.56 E-value=2.1e+02 Score=34.54 Aligned_cols=150 Identities=6% Similarity=0.039 Sum_probs=77.9
Q ss_pred CcHHHHHHHhhcccc--CCCHHHHHHHHHHHHHHhccCCCC-CccccccchHHHHHHhccCc---HH----HHHHHHHHH
Q 036199 423 NFVEPLIRFLRDARD--LHDSRAQRIGCRLLLAFVSKNRSG-IPYLNEDLFSLLASFLHSAA---AT----EETLAILVA 492 (710)
Q Consensus 423 G~I~~LV~lL~s~~~--~~d~~~q~~A~~~L~nL~~~~~~k-~~i~~~gaI~~LV~lL~s~~---~~----~~Aa~~L~~ 492 (710)
..++.++..|..... ..+-...+.++.++..++...... ..-.-..+++.|+.++.+.. .. ..++++|..
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 345555565543211 246788888999999886432110 11112356777888775311 11 134455544
Q ss_pred hccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc--ccc----chhchHHhh----c--Cc
Q 036199 493 LSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA--PSE----FLPKLVPFL----K--DA 560 (710)
Q Consensus 493 Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv--~aG----~V~~Lv~lL----~--~~ 560 (710)
.+..-...... =..++..|++.+.+..++++..|+.|+.+||.. .+..++ +.| .++.++..+ . ++
T Consensus 527 y~~wl~~~~~~-L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~ 603 (1023)
T 4hat_C 527 YPRFLKAHWNF-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP 603 (1023)
T ss_dssp CHHHHHHCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH
T ss_pred HHHHHhccHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCH
Confidence 33211111111 023345555555667789999999999999952 222232 122 334343333 2 22
Q ss_pred hHHHHHHHHHHHHhc
Q 036199 561 TLAVSCLVILKNMCN 575 (710)
Q Consensus 561 ~~~~~al~iL~nLa~ 575 (710)
.....+..+++.+..
T Consensus 604 ~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 604 QQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566666776666
No 227
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.19 E-value=1.4e+02 Score=27.19 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=52.0
Q ss_pred ChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHH-HHHHhhc---CCHHHHHHHHHHHHHhhh
Q 036199 589 CLPSVAELLE-IGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPS-LVKISVY---GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 589 ~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~-Lv~L~~~---gt~~~k~kA~~LL~~l~~ 659 (710)
++..|.+-|. ++++.++-.|+.+|-.+..+. ......+.....+.- |+.+... ....+|+++..+++--..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4567788887 489999999999987777765 456777777778887 7777632 235788888877775544
Done!