Your job contains 1 sequence.
>036201
MKFGNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERA
KEGESLEELRARTAAQFTDEVNGFQNSTKLSKKRKHMTILDEGTMKFERIAE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036201
(112 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
WB|WBGene00004315 - symbol:rbd-1 species:6239 "Caenorhabd... 102 3.0e-09 2
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 116 6.6e-09 2
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 144 8.5e-09 1
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 116 1.8e-08 2
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 138 3.3e-08 1
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 115 4.6e-08 2
UNIPROTKB|H0YIL2 - symbol:RBM19 "Probable RNA-binding pro... 120 1.4e-07 1
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 128 3.9e-07 1
POMBASE|SPBP22H7.02c - symbol:SPBP22H7.02c "RNA-binding p... 127 5.1e-07 1
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 124 1.3e-06 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 124 1.3e-06 1
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 121 2.5e-06 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 120 3.4e-06 1
FB|FBgn0036018 - symbol:CG3335 species:7227 "Drosophila m... 119 4.1e-06 1
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 119 4.3e-06 1
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 106 9.6e-05 1
ASPGD|ASPL0000007134 - symbol:AN6256 species:162425 "Emer... 85 0.00080 1
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 102 (41.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 6 HRGFAFVEYVTKQEAQNALEAL-SNTHLYGRHLIFSVAHD 44
HRGF FV++++ EA A ++L +THLYGR L+ A D
Sbjct: 789 HRGFGFVDFISADEAHRAFDSLVHSTHLYGRRLVLEWAKD 828
Score = 71 (30.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 56 VMERAKEGESLEELRARTAAQFTDEVNGFQNSTKLSKK-RKHMTILDE 102
V+E AK+ E++EELR +TA +F G + S +++ ++ + I D+
Sbjct: 822 VLEWAKDDETVEELREKTAEKFAGNKKGVKKSKAQTEEFQQQLQIADD 869
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 116 (45.9 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVA 42
G+HRGF FV+++TKQ+A+ A AL + THLYGR L+ A
Sbjct: 534 GSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLVLEWA 573
Score = 50 (22.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 56 VMERAKEGESLEELRARTAAQFTDEVNGFQNSTKLSK 92
V+E A E++E LR RTA F D + S L +
Sbjct: 569 VLEWADTEETVEALRRRTADHFHDSPKKKKRSEMLGE 605
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 144 (55.7 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
G HRGF FVE++T++EA+NA+EAL N+H YGRHL+ A
Sbjct: 832 GGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYA 870
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 116 (45.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVA 42
G+HRGF FV+++TKQ+A+ A AL + THLYGR L+ A
Sbjct: 858 GSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLVLEWA 897
Score = 50 (22.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 56 VMERAKEGESLEELRARTAAQFTDEVNGFQNSTKLSK 92
V+E A E++E LR RTA F D + S L +
Sbjct: 893 VLEWADTEETVEALRRRTADHFHDSPKKKKRSEMLGE 929
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 138 (53.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEG 63
G + G+AFVE+VTKQEA NA +AL++TH YGRHL+ A+D S+ A + AK
Sbjct: 739 GQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWANDDN-SMEA--IRKRSAAKFD 795
Query: 64 ESLEELRARTAAQFTDEVN 82
E + R R +++ + N
Sbjct: 796 EENDNARKRKSSKAVEGKN 814
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 115 (45.5 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVA 42
G+HRGF F++++TKQ+A+ A AL + THLYGR L+ A
Sbjct: 843 GSHRGFGFIDFLTKQDAKKAFSALCHSTHLYGRRLVLEWA 882
Score = 47 (21.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 56 VMERAKEGESLEELRARTAAQFTD 79
V+E A E++++LR +TA F D
Sbjct: 878 VLEWADAEETVDDLRRKTAQHFHD 901
>UNIPROTKB|H0YIL2 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC009731 EMBL:AC073863
EMBL:AC090669 HGNC:HGNC:29098 ChiTaRS:RBM19 Ensembl:ENST00000552384
Bgee:H0YIL2 Uniprot:H0YIL2
Length = 110
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQIISIIAPTFQVMERAKE 62
G HRGF FV+++TKQ+A+ A AL + THLYGR L+ A ++ T Q + R K
Sbjct: 21 GTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV------TLQALRR-KT 73
Query: 63 GESLEELRARTAAQFTDEV 81
E + + DE+
Sbjct: 74 AAHFHEPPKKKRSVVLDEI 92
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 128 (50.1 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESL 66
RGF F ++V+ +EA+NA++AL NTHL GR L+ A+++ I Q +E+ K GE L
Sbjct: 737 RGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANEEAIDA-EEEIQRIEK-KVGEQL 794
Query: 67 EELR 70
+ ++
Sbjct: 795 DRVK 798
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 127 (49.8 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGES 65
RGFAF E+VT +EA NA+ AL NTHL GRHL+ A + + + + M + E+
Sbjct: 761 RGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYASNATMDDMQHAIEKMAKEANAEA 819
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 124 (48.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQIISIIAPTFQVMERAKE 62
G HRGF FV++ TKQ+A+ A AL + THLYGR L+ A ++ T Q + R K
Sbjct: 876 GTHRGFGFVDFFTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV------TLQALRR-KT 928
Query: 63 GESLEELRARTAAQFTDEV 81
E E + + DE+
Sbjct: 929 AEHFHEPPKKKRSVVLDEI 947
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 124 (48.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQIISIIAPTFQVMERAKE 62
G HRGF FV+++TKQ+A+ A +AL + THLYGR L+ A ++ + Q + R K
Sbjct: 871 GTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVLEWADSEV------SLQALRR-KT 923
Query: 63 GESLEELRARTAAQFTDEV 81
E E + + DE+
Sbjct: 924 AEHFHEPPKKKRSVVLDEI 942
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 121 (47.7 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQIISIIAPTFQVMERAKE 62
G HRGF FV+++TKQ+A+ A AL + THLYGR L+ A D +S+ P R K
Sbjct: 831 GTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA-DSEVSL--PAL----RRKT 883
Query: 63 GESLEELRARTAAQFTDEV 81
E E + + DE+
Sbjct: 884 AEHFHEPPKKKRSVVLDEI 902
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 120 (47.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQIISIIAPTFQVMERAKE 62
G HRGF FV+++TKQ+A+ A AL + THLYGR L+ A ++ T Q + R K
Sbjct: 871 GTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV------TLQALRR-KT 923
Query: 63 GESLEELRARTAAQFTDEV 81
E + + DE+
Sbjct: 924 AAHFHEPPKKKRSVVLDEI 942
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 119 (46.9 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 6 HRGFAFVEYVTKQEAQNALEALS-NTHLYGRHLIFS-VAHDQIISIIAPTFQVMERAKEG 63
HRGF FV+Y++K EA+ A +ALS +THLYGR L+ A+D +
Sbjct: 827 HRGFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWSAND-----------------DN 869
Query: 64 ESLEELRARTAAQF 77
+ +EELR RTAA+F
Sbjct: 870 QDVEELRKRTAAKF 883
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 119 (46.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQI 46
G HRGF FV+++TKQ+A+ A AL + THLYGR L+ A ++
Sbjct: 863 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 906
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 106 (42.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESL 66
RGFAFVE++ +EA+NA++ L HL GR L+ A + + ++ ++ ++ +
Sbjct: 803 RGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAEEDAVDAEEEIARMTKKVRKQVAT 862
Query: 67 EELRA 71
E+ A
Sbjct: 863 NEMAA 867
>ASPGD|ASPL0000007134 [details] [associations]
symbol:AN6256 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
Length = 153
Score = 85 (35.0 bits), Expect = 0.00081, P = 0.00080
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45
NHRGF +VE+ + ++A+ A++ + + LYGR + + A Q
Sbjct: 51 NHRGFGYVEFDSPEDAKEAIDNMDGSELYGRTIKVAPAKPQ 91
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.131 0.357 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 112 112 0.00091 102 3 10 22 0.43 30
29 0.43 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 548 (58 KB)
Total size of DFA: 137 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.35u 0.15s 17.50t Elapsed: 00:00:01
Total cpu time: 17.35u 0.15s 17.50t Elapsed: 00:00:01
Start: Sat May 11 04:37:31 2013 End: Sat May 11 04:37:32 2013