BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036201
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
G HRGF FVE++T++EA+NA+EAL N+H YGRHL+ A
Sbjct: 832 GGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYA 870
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 30/100 (30%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALS-NTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKE 62
G HRGF FV+++TKQ+A+ A AL +THLYGR L+ A ++
Sbjct: 871 GTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV---------------- 914
Query: 63 GESLEELRARTAAQFTDEVNGFQNSTKLSKKRKHMTILDE 102
+L+ LR +TAA F + K+K +LDE
Sbjct: 915 --TLQALRRKTAAHFHE-----------PPKKKRSVVLDE 941
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 2 KFGNH-RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43
KF N RGF FVEY T +EAQ+A+EAL +THL GRHL+ +H
Sbjct: 753 KFDNTTRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQWSH 795
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
RGFAF E+VT +EA NA+ AL NTHL GRHL+ A
Sbjct: 761 RGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALS-NTHLYGRHLIFSVAHDQIISIIAPTFQVMER 59
G HRGF FV+++TKQ+A+ A AL +THLYGR L+ A ++ T Q + R
Sbjct: 863 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV------TVQTLRR 913
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESL 66
RGF F ++V+ +EA+NA++AL NTHL GR L+ A+++ + Q+ ++ GE L
Sbjct: 742 RGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANEEAVDPEQEIEQIEKKV--GEQL 799
Query: 67 EELR 70
+ ++
Sbjct: 800 DRVK 803
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43
RGF F ++V+ +EA+NA++AL NTHL GR L+ A+
Sbjct: 737 RGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFAN 773
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44
RGFAF+E+ T EA A+EAL +THL GRHL+ A++
Sbjct: 686 RGFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWANE 723
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44
RGFAF+E+ T EA A+EAL +THL GRHL+ A++
Sbjct: 686 RGFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWANE 723
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43
RGFAF EYV+ +EA++A+ AL THL GR L+ A
Sbjct: 743 RGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQ 779
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39
RGFAFVE+V +EA+NA++ L HL GR L+
Sbjct: 778 RGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVM 810
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45
GF FVE+ TK++A + A+ T + G + ++H Q
Sbjct: 687 GFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQ 724
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
RGFAFVE++ EA+NA++ L HL GR L+ A
Sbjct: 752 RGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYA 787
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 2 KFGNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAK 61
K GN R FAF+ Y ++Q+A +A+E + + + + ++A S P R K
Sbjct: 46 KSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMAK----SFADPRVPTPMREK 101
Query: 62 EGESLEELRAR 72
E+L+ LR R
Sbjct: 102 RREALKRLRER 112
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39
RGFAFVE++ +EA+NA++ L HL GR L+
Sbjct: 792 RGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVM 824
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48
GF F E+ TK++A + A+ T L G L ++H Q S
Sbjct: 698 GFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTS 738
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47
+ RGFAF E+ T +EA NA +L +TH+ GR L+ A + I
Sbjct: 742 SSRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVIDFAQAEDI 784
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39
RGFAFVE++ +EA+NA++ L HL GR L+
Sbjct: 803 RGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVM 835
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45
GF FVE+ TK++A + A+ T + G + ++H Q
Sbjct: 710 GFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQ 747
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43
RGFAFVE+ +EA+ A+ L HL GR L+ A
Sbjct: 757 RGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAE 793
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45
GF FVE+ TK++A A+ L L G L ++H Q
Sbjct: 664 GFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQ 701
>sp|Q5R6W3|RBM18_PONAB Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1
Length = 190
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46
G RG+ FV + TKQEA+ A++ L+ + L+ AH Q+
Sbjct: 66 GQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
>sp|Q9CR83|RBM18_MOUSE Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1
Length = 190
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46
G RG+ FV + TKQEA+ A++ L+ + L+ AH Q+
Sbjct: 66 GQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
>sp|Q96H35|RBM18_HUMAN Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1
Length = 190
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46
G RG+ FV + TKQEA+ A++ L+ + L+ AH Q+
Sbjct: 66 GQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
G +GFAF+E+ + ++A++A+++ +NT + GR +
Sbjct: 448 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSI 481
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 2 KFGNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
K G+++G A+VE+ + EA ALE + GR +
Sbjct: 357 KDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSI 392
>sp|Q3ZCC5|RBM18_BOVIN Probable RNA-binding protein 18 OS=Bos taurus GN=RBM18 PE=2 SV=1
Length = 190
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46
G RG+ FV + TKQEA+ A++ L+ + L+ AH Q+
Sbjct: 66 GQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLI 38
GN+RG+AFV + KQEA+NA++ L+N + L+
Sbjct: 93 GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLL 127
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSN 29
GN+RG+AFV + KQEA+NA++ L+N
Sbjct: 93 GNNRGYAFVTFSNKQEAKNAIKQLNN 118
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43
G RGF FV Y + +E NA+E+L L GR + S A
Sbjct: 226 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43
G +GF FV Y + QE QNA+++L L GR + S A
Sbjct: 242 GRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
G +G+AFVE+ T ++A+ AL + +NT + GR +
Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAI 528
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44
+G +FV ++ K+ AQN + L+N L+GR + S+A D
Sbjct: 51 KGVSFVLFLDKESAQNCVRGLNNKQLFGRAIKASIAKD 88
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43
G RGF FV Y + +E NA+E+L L GR + S A
Sbjct: 232 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
H+GFAFVEY + AQ ALE +++ L GR++
Sbjct: 126 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 157
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY---GRHLIFSVAHDQIISIIAPT 53
G H+GF F+EY ++ Q++L+A+S+ +L+ G++L A + ++ PT
Sbjct: 221 GKHKGFGFIEY---EKPQSSLDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPT 270
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 1 MKF-GNHRGFAFVEYVTKQEAQNALEALSNTHL-YGRHLIFSVAHDQIISIIAPTFQVME 58
M+F G +RG+AFV Y TK+EAQ A+ L+N + G+ + V+ D I + +
Sbjct: 94 MEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIG---AIPK 150
Query: 59 RAKEGESLEELRART 73
K+ E L+E++ T
Sbjct: 151 EKKKEEILDEMKKVT 165
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1 MKFGNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
M+ G+ RG+ FV + ++ +AQNA++++ L GR L
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 233
>sp|Q26548|PPIE_SCHMA Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1
SV=2
Length = 273
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
HRGFAFVE+ ++A +A++ ++ + ++GR + +VA
Sbjct: 10 HRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44
+G AF+ ++ K AQN A++N L+GR + S+A D
Sbjct: 51 KGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAID 88
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
H+GFAFVEY + AQ ALE +++ L GR++
Sbjct: 168 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 199
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
G H+G+ F+EY Q +Q+A+ +++ L G++L
Sbjct: 263 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
H+GFAFVEY + AQ ALE +++ L GR++
Sbjct: 169 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 200
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
G H+G+ F+EY Q +Q+A+ +++ L G++L
Sbjct: 264 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44
+G AF+ ++ K AQN A++N L+GR + S+A D
Sbjct: 51 KGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAID 88
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
H+GFAFVEY + AQ ALE +++ L GR++
Sbjct: 174 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 205
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAP 52
G H+G+ F+EY Q +Q+A+ +++ L G++L A + ++ P
Sbjct: 269 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTP 317
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
H+GFAFVEY + AQ ALE +++ L GR++
Sbjct: 174 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 205
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAP 52
G H+G+ F+EY Q +Q+A+ +++ L G++L A + ++ P
Sbjct: 269 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTP 317
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
HRGFAF+EY ++A A++ ++++ L GR + ++A
Sbjct: 46 HRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLA 82
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
H+GFAFVEY + AQ ALE +++ L GR++
Sbjct: 140 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 171
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
G H+G+ F+EY Q +Q+A+ +++ L G++L
Sbjct: 235 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 1 MKF-GNHRGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVAHDQIISIIAPTFQVME 58
M+F G +RG+AFV Y TK+EAQ A+ L+N + G+ + V+ D I + +
Sbjct: 94 MEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIG---AIPK 150
Query: 59 RAKEGESLEELRART 73
K+ E L+E++ T
Sbjct: 151 EKKKEEILDEMKKVT 165
>sp|Q66J99|RBM18_XENLA Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2
SV=1
Length = 190
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46
G RG+ FV + TK EA+ A+ L+ + L+ AH QI
Sbjct: 66 GQPRGYCFVNFETKAEAERAIHCLNGKMALSKKLVVRWAHAQI 108
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 1 MKF-GNHRGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVAHDQIISIIAPTFQVME 58
M+F G +RG+AFV Y TK+EAQ A+ L+N + G+ + V+ D I + +
Sbjct: 94 MEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIG---AIPK 150
Query: 59 RAKEGESLEELRART 73
K+ E L+E++ T
Sbjct: 151 EKKKEEILDEMKKVT 165
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLI 38
GN+RG+AFV + K EA+NA++ L+N + L+
Sbjct: 93 GNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLL 127
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLI 38
GN+RG+AFV + K EA+NA++ L+N + L+
Sbjct: 93 GNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLL 127
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37
H+GFAFVEY + AQ ALE ++ + GR++
Sbjct: 170 HKGFAFVEYEIPEGAQLALEQMNGALMGGRNI 201
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
HRGFAFVE+ ++A A++ ++ + L+GR + ++A
Sbjct: 46 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE
PE=2 SV=1
Length = 301
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
HRGFAFVE+ ++A A++ ++ + L+GR + ++A
Sbjct: 46 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF--SVAHDQIISIIAPTF 54
NH+GF FVE++ +++A A++ L+ LYG+ + + AH++ + + A F
Sbjct: 51 ANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIF 103
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
G +GFAF+ + + + + ALEA++ L R + S A
Sbjct: 139 GTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE
PE=1 SV=1
Length = 301
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42
HRGFAFVE+ ++A A++ ++ + L+GR + ++A
Sbjct: 46 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,307,608
Number of Sequences: 539616
Number of extensions: 1173788
Number of successful extensions: 4366
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4023
Number of HSP's gapped (non-prelim): 371
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)