Query 036201
Match_columns 112
No_of_seqs 174 out of 1521
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0111 Cyclophilin-type pepti 99.3 2E-12 4.4E-17 98.4 2.6 57 4-60 49-111 (298)
2 KOG0110 RNA-binding protein (R 99.0 5.6E-10 1.2E-14 95.1 4.1 63 4-84 652-714 (725)
3 PLN03134 glycine-rich RNA-bind 98.8 1.3E-08 2.7E-13 72.3 6.3 42 4-45 73-114 (144)
4 smart00361 RRM_1 RNA recogniti 98.8 1.2E-08 2.6E-13 63.7 5.3 36 4-39 34-69 (70)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.8 1.5E-08 3.3E-13 79.0 6.0 42 4-45 308-349 (352)
6 PF13893 RRM_5: RNA recognitio 98.7 5.7E-08 1.2E-12 57.7 6.0 36 7-42 21-56 (56)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.7 4.4E-08 9.5E-13 76.4 7.0 66 4-72 42-112 (352)
8 KOG0145 RNA-binding protein EL 98.7 4E-08 8.7E-13 76.7 6.1 74 4-77 80-155 (360)
9 TIGR01659 sex-lethal sex-letha 98.7 5E-08 1.1E-12 78.1 6.3 67 4-73 146-217 (346)
10 KOG0122 Translation initiation 98.6 4.7E-08 1E-12 75.2 5.1 44 2-45 225-269 (270)
11 KOG0113 U1 small nuclear ribon 98.6 8.6E-08 1.9E-12 75.5 5.8 50 4-53 140-189 (335)
12 KOG0125 Ataxin 2-binding prote 98.5 7.2E-08 1.6E-12 76.8 4.2 44 5-48 134-177 (376)
13 TIGR01628 PABP-1234 polyadenyl 98.5 4.4E-07 9.6E-12 75.6 6.7 81 4-102 216-300 (562)
14 KOG0131 Splicing factor 3b, su 98.4 1.4E-07 3.1E-12 69.9 3.0 40 4-43 48-87 (203)
15 TIGR01645 half-pint poly-U bin 98.4 4.6E-07 9.9E-12 77.4 6.5 48 4-51 243-290 (612)
16 KOG0148 Apoptosis-promoting RN 98.4 2.4E-07 5.2E-12 72.4 4.2 43 4-46 101-143 (321)
17 PF00076 RRM_1: RNA recognitio 98.4 5.3E-07 1.2E-11 54.2 4.7 35 4-38 36-70 (70)
18 KOG0117 Heterogeneous nuclear 98.4 9E-07 2E-11 72.9 6.6 76 4-83 122-198 (506)
19 KOG4208 Nucleolar RNA-binding 98.4 4.3E-07 9.4E-12 68.2 4.3 44 2-45 87-130 (214)
20 TIGR01645 half-pint poly-U bin 98.4 8.4E-07 1.8E-11 75.8 6.4 40 4-43 146-185 (612)
21 KOG0107 Alternative splicing f 98.3 4.9E-07 1.1E-11 66.8 3.8 43 5-47 45-87 (195)
22 KOG0127 Nucleolar protein fibr 98.3 1E-06 2.2E-11 74.3 5.1 42 4-45 155-196 (678)
23 smart00360 RRM RNA recognition 98.3 1.9E-06 4.1E-11 50.5 5.0 36 4-39 35-70 (71)
24 KOG4207 Predicted splicing fac 98.3 6.1E-07 1.3E-11 68.0 3.3 41 4-44 52-92 (256)
25 KOG0126 Predicted RNA-binding 98.3 3.9E-07 8.6E-12 67.8 1.9 40 4-43 74-113 (219)
26 PLN03213 repressor of silencin 98.2 2.6E-06 5.6E-11 71.5 6.5 38 7-44 48-87 (759)
27 TIGR01642 U2AF_lg U2 snRNP aux 98.2 2.8E-06 6.1E-11 69.5 5.9 41 4-44 334-374 (509)
28 TIGR01628 PABP-1234 polyadenyl 98.2 3.5E-06 7.6E-11 70.2 6.5 40 4-43 323-362 (562)
29 smart00362 RRM_2 RNA recogniti 98.2 4.7E-06 1E-10 49.0 5.2 36 4-39 36-71 (72)
30 TIGR01622 SF-CC1 splicing fact 98.2 3.1E-06 6.7E-11 68.5 5.6 41 4-44 225-265 (457)
31 KOG0108 mRNA cleavage and poly 98.2 2.4E-06 5.2E-11 70.5 4.8 43 2-44 54-97 (435)
32 COG0724 RNA-binding proteins ( 98.1 4.8E-06 1E-10 59.7 5.3 41 4-44 154-194 (306)
33 PF14259 RRM_6: RNA recognitio 98.1 5.6E-06 1.2E-10 50.5 4.7 34 4-37 36-69 (70)
34 KOG0130 RNA-binding protein RB 98.1 2.6E-06 5.7E-11 61.0 3.1 41 4-44 111-151 (170)
35 TIGR01648 hnRNP-R-Q heterogene 98.1 6.8E-06 1.5E-10 69.9 5.4 65 4-72 96-161 (578)
36 TIGR01622 SF-CC1 splicing fact 98.0 1.6E-05 3.5E-10 64.3 7.3 40 4-44 128-167 (457)
37 TIGR01642 U2AF_lg U2 snRNP aux 98.0 7.9E-06 1.7E-10 66.8 5.4 42 4-45 461-502 (509)
38 KOG0114 Predicted RNA-binding 98.0 9.9E-06 2.1E-10 55.7 4.9 40 6-45 56-95 (124)
39 TIGR01648 hnRNP-R-Q heterogene 98.0 1.1E-05 2.4E-10 68.6 5.8 42 5-46 267-308 (578)
40 TIGR01659 sex-lethal sex-letha 98.0 1.4E-05 2.9E-10 64.2 5.8 41 4-44 232-274 (346)
41 KOG0121 Nuclear cap-binding pr 98.0 9.9E-06 2.1E-10 57.5 4.1 40 4-43 75-114 (153)
42 KOG0124 Polypyrimidine tract-b 98.0 6.3E-06 1.4E-10 67.1 3.3 39 4-42 152-190 (544)
43 KOG0110 RNA-binding protein (R 98.0 1.7E-05 3.7E-10 68.3 6.0 38 6-43 559-596 (725)
44 KOG0123 Polyadenylate-binding 98.0 1.3E-05 2.9E-10 64.7 5.2 81 4-102 205-285 (369)
45 cd00590 RRM RRM (RNA recogniti 97.9 3.1E-05 6.7E-10 45.6 5.5 36 5-40 38-73 (74)
46 KOG0145 RNA-binding protein EL 97.9 2.1E-05 4.6E-10 61.6 5.0 40 4-43 317-356 (360)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 3.1E-05 6.7E-10 64.0 5.8 40 6-45 312-351 (481)
48 PLN03120 nucleic acid binding 97.8 4.8E-05 1E-09 59.1 5.5 39 5-44 41-79 (260)
49 KOG0147 Transcriptional coacti 97.7 4.3E-05 9.4E-10 64.2 4.7 42 4-45 317-358 (549)
50 KOG0149 Predicted RNA-binding 97.7 2.6E-05 5.7E-10 59.8 2.9 42 2-44 48-90 (247)
51 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.6 9E-05 1.9E-09 61.3 5.0 40 6-45 435-480 (481)
52 KOG0226 RNA-binding proteins [ 97.6 8.8E-05 1.9E-09 57.7 4.0 36 4-39 229-264 (290)
53 KOG0144 RNA-binding protein CU 97.6 8E-05 1.7E-09 61.5 3.9 34 4-37 162-198 (510)
54 KOG0131 Splicing factor 3b, su 97.5 0.00015 3.3E-09 54.0 4.6 46 4-49 136-181 (203)
55 KOG0146 RNA-binding protein ET 97.5 0.00018 3.9E-09 56.7 4.5 50 4-71 57-111 (371)
56 KOG0127 Nucleolar protein fibr 97.4 0.0001 2.3E-09 62.4 3.0 43 4-46 44-86 (678)
57 KOG0123 Polyadenylate-binding 97.3 0.00024 5.2E-09 57.6 3.8 42 6-47 36-77 (369)
58 KOG0148 Apoptosis-promoting RN 97.3 0.00044 9.4E-09 54.4 4.7 40 5-44 198-237 (321)
59 KOG4206 Spliceosomal protein s 97.2 0.00034 7.4E-09 53.2 3.5 42 4-45 49-90 (221)
60 KOG0146 RNA-binding protein ET 97.1 0.00019 4.2E-09 56.5 1.4 42 4-45 324-365 (371)
61 PLN03121 nucleic acid binding 97.1 0.0013 2.7E-08 50.8 5.3 39 4-43 41-79 (243)
62 KOG4212 RNA-binding protein hn 97.0 0.00098 2.1E-08 55.5 4.1 40 4-43 83-122 (608)
63 KOG0117 Heterogeneous nuclear 96.9 0.0015 3.3E-08 54.3 4.8 41 5-45 291-331 (506)
64 KOG0105 Alternative splicing f 96.9 0.00096 2.1E-08 50.2 3.3 40 6-45 44-83 (241)
65 KOG4209 Splicing factor RNPS1, 96.9 0.0014 3.1E-08 50.0 4.2 41 4-45 140-180 (231)
66 KOG0415 Predicted peptidyl pro 96.8 0.0014 3E-08 53.5 3.5 42 4-45 278-319 (479)
67 KOG0124 Polypyrimidine tract-b 96.8 0.0012 2.5E-08 54.1 3.0 45 4-48 249-293 (544)
68 KOG4212 RNA-binding protein hn 96.3 0.0053 1.2E-07 51.3 4.4 37 4-42 572-608 (608)
69 KOG4661 Hsp27-ERE-TATA-binding 96.3 0.0048 1E-07 53.1 3.7 39 7-45 447-485 (940)
70 PF11608 Limkain-b1: Limkain b 96.2 0.0091 2E-07 39.5 4.2 38 6-43 38-75 (90)
71 KOG0106 Alternative splicing f 96.1 0.0021 4.6E-08 48.8 1.0 38 7-44 35-72 (216)
72 KOG0132 RNA polymerase II C-te 96.1 0.011 2.5E-07 52.0 5.5 64 5-68 455-525 (894)
73 KOG0144 RNA-binding protein CU 96.1 0.0029 6.3E-08 52.5 1.7 39 4-42 463-501 (510)
74 PF04059 RRM_2: RNA recognitio 96.0 0.016 3.4E-07 38.9 4.5 30 4-33 42-71 (97)
75 KOG1457 RNA binding protein (c 95.8 0.016 3.4E-07 44.8 4.6 39 7-45 77-118 (284)
76 KOG0109 RNA-binding protein LA 95.5 0.017 3.7E-07 46.0 3.8 40 6-45 35-74 (346)
77 KOG0120 Splicing factor U2AF, 95.2 0.011 2.3E-07 49.9 2.0 45 4-48 328-372 (500)
78 KOG0109 RNA-binding protein LA 95.2 0.019 4.2E-07 45.7 3.1 40 6-45 111-150 (346)
79 KOG2314 Translation initiation 94.9 0.043 9.4E-07 47.1 4.5 38 4-41 102-140 (698)
80 KOG0120 Splicing factor U2AF, 94.6 0.051 1.1E-06 45.9 4.5 40 8-47 455-494 (500)
81 KOG1548 Transcription elongati 94.6 0.2 4.4E-06 40.7 7.4 40 5-44 312-351 (382)
82 KOG0106 Alternative splicing f 93.8 0.035 7.6E-07 42.2 1.7 33 7-39 133-165 (216)
83 KOG4205 RNA-binding protein mu 93.7 0.021 4.6E-07 45.5 0.3 44 4-48 45-88 (311)
84 KOG1548 Transcription elongati 93.5 0.18 4E-06 40.9 5.4 42 4-45 180-221 (382)
85 KOG0533 RRM motif-containing p 93.5 0.15 3.2E-06 39.4 4.6 45 4-48 121-165 (243)
86 KOG0153 Predicted RNA-binding 92.8 0.15 3.2E-06 41.4 3.8 39 6-44 263-302 (377)
87 KOG1456 Heterogeneous nuclear 92.6 0.16 3.5E-06 41.9 3.9 40 9-48 161-202 (494)
88 KOG4211 Splicing factor hnRNP- 92.4 0.28 6.1E-06 41.4 5.1 67 4-71 46-125 (510)
89 KOG4205 RNA-binding protein mu 92.4 0.074 1.6E-06 42.4 1.7 44 4-48 136-179 (311)
90 COG5175 MOT2 Transcriptional r 92.3 0.18 3.8E-06 41.3 3.7 33 11-43 169-201 (480)
91 KOG0147 Transcriptional coacti 91.6 0.24 5.2E-06 42.2 3.9 38 6-43 489-526 (549)
92 KOG4454 RNA binding protein (R 91.4 0.12 2.5E-06 40.0 1.6 39 4-43 47-85 (267)
93 PF03880 DbpA: DbpA RNA bindin 91.0 0.32 6.9E-06 30.4 3.2 35 7-42 40-74 (74)
94 PF08952 DUF1866: Domain of un 88.7 0.98 2.1E-05 32.5 4.5 37 8-45 71-107 (146)
95 PF11767 SET_assoc: Histone ly 88.5 0.98 2.1E-05 28.2 3.9 29 10-38 36-64 (66)
96 KOG1995 Conserved Zn-finger pr 87.9 0.36 7.8E-06 39.2 2.1 42 4-45 113-154 (351)
97 KOG1996 mRNA splicing factor [ 87.4 0.7 1.5E-05 37.1 3.4 35 10-44 332-366 (378)
98 KOG1456 Heterogeneous nuclear 87.1 1 2.3E-05 37.3 4.3 40 5-44 323-362 (494)
99 KOG4660 Protein Mei2, essentia 87.1 0.31 6.7E-06 41.6 1.3 34 5-38 110-143 (549)
100 KOG0151 Predicted splicing reg 87.1 0.67 1.4E-05 41.0 3.3 42 5-46 217-258 (877)
101 KOG1190 Polypyrimidine tract-b 86.3 1.2 2.5E-05 37.3 4.2 38 7-44 335-372 (492)
102 KOG0116 RasGAP SH3 binding pro 84.8 0.97 2.1E-05 37.6 3.1 37 4-41 327-363 (419)
103 KOG2202 U2 snRNP splicing fact 81.4 1.2 2.5E-05 34.9 2.2 38 7-44 110-147 (260)
104 KOG4210 Nuclear localization s 78.0 0.74 1.6E-05 36.2 0.1 44 4-48 224-267 (285)
105 PF04847 Calcipressin: Calcipr 77.8 4.7 0.0001 29.8 4.4 40 8-47 32-73 (184)
106 KOG4849 mRNA cleavage factor I 77.6 11 0.00023 31.3 6.6 34 4-37 121-154 (498)
107 KOG4660 Protein Mei2, essentia 75.8 3.6 7.8E-05 35.3 3.6 29 5-33 429-457 (549)
108 KOG4206 Spliceosomal protein s 75.6 4.4 9.5E-05 31.0 3.7 36 7-42 183-219 (221)
109 KOG4307 RNA binding protein RB 71.1 7.1 0.00015 34.9 4.4 37 4-40 906-942 (944)
110 KOG2416 Acinus (induces apopto 68.0 7.5 0.00016 34.0 3.8 43 6-48 480-525 (718)
111 KOG2193 IGF-II mRNA-binding pr 66.3 3.7 8.1E-05 34.6 1.7 40 7-46 37-77 (584)
112 PF08777 RRM_3: RNA binding mo 64.6 14 0.0003 24.6 4.0 23 8-30 38-60 (105)
113 KOG4211 Splicing factor hnRNP- 61.8 9 0.0002 32.6 3.1 40 4-44 142-181 (510)
114 KOG0128 RNA-binding protein SA 57.5 4.8 0.0001 36.3 0.9 32 4-36 706-737 (881)
115 KOG1190 Polypyrimidine tract-b 56.0 12 0.00026 31.4 2.9 42 2-43 446-489 (492)
116 PF05172 Nup35_RRM: Nup53/35/4 53.0 26 0.00057 23.4 3.7 29 8-37 55-83 (100)
117 KOG2068 MOT2 transcription fac 51.6 3.8 8.2E-05 33.1 -0.6 36 10-45 128-163 (327)
118 KOG0105 Alternative splicing f 49.0 17 0.00037 27.7 2.5 28 7-34 150-177 (241)
119 KOG1365 RNA-binding protein Fu 49.0 9.2 0.0002 32.0 1.2 40 4-43 321-360 (508)
120 PF03439 Spt5-NGN: Early trans 44.5 47 0.001 21.0 3.8 30 4-33 41-70 (84)
121 KOG3152 TBP-binding protein, a 43.4 5 0.00011 31.6 -1.1 27 10-36 131-157 (278)
122 PF08206 OB_RNB: Ribonuclease 40.5 23 0.00049 20.9 1.7 13 4-16 5-17 (58)
123 PF14605 Nup35_RRM_2: Nup53/35 38.5 31 0.00067 20.1 2.1 19 6-24 35-53 (53)
124 PRK15464 cold shock-like prote 37.1 18 0.00039 22.5 1.0 13 4-16 13-25 (70)
125 PRK15463 cold shock-like prote 36.6 19 0.00042 22.3 1.0 13 4-16 13-25 (70)
126 PRK09937 stationary phase/star 36.0 19 0.0004 22.7 0.9 13 4-16 10-22 (74)
127 PF11823 DUF3343: Protein of u 35.7 58 0.0013 19.8 3.1 30 8-37 2-31 (73)
128 PRK14998 cold shock-like prote 35.1 23 0.0005 22.2 1.2 13 4-16 10-22 (73)
129 PRK10943 cold shock-like prote 35.0 21 0.00045 22.0 1.0 13 4-16 12-24 (69)
130 PRK09507 cspE cold shock prote 34.6 21 0.00047 21.9 1.0 13 4-16 12-24 (69)
131 KOG4019 Calcineurin-mediated s 33.7 67 0.0014 24.1 3.6 40 6-45 50-90 (193)
132 PRK10354 RNA chaperone/anti-te 33.3 23 0.0005 21.8 1.0 12 5-16 14-25 (70)
133 PRK09890 cold shock protein Cs 33.2 23 0.00051 21.8 1.0 12 5-16 14-25 (70)
134 TIGR02381 cspD cold shock doma 33.0 22 0.00048 21.7 0.8 13 4-16 10-22 (68)
135 PF02714 DUF221: Domain of unk 31.9 65 0.0014 24.8 3.5 31 10-42 1-31 (325)
136 PRK08559 nusG transcription an 31.8 52 0.0011 23.2 2.7 25 6-30 45-69 (153)
137 KOG2318 Uncharacterized conser 31.2 70 0.0015 28.1 3.8 32 9-40 270-301 (650)
138 PF00313 CSD: 'Cold-shock' DNA 29.9 45 0.00098 19.7 1.9 13 5-17 10-22 (66)
139 cd04458 CSP_CDS Cold-Shock Pro 28.5 35 0.00076 20.1 1.2 12 5-16 10-21 (65)
140 KOG1457 RNA binding protein (c 28.4 35 0.00076 26.7 1.4 25 9-33 250-274 (284)
141 PF10309 DUF2414: Protein of u 28.0 65 0.0014 19.7 2.3 18 10-27 45-62 (62)
142 KOG0112 Large RNA-binding prot 26.9 30 0.00066 31.7 1.0 40 6-45 490-531 (975)
143 PF07576 BRAP2: BRCA1-associat 26.2 1.1E+02 0.0023 20.7 3.4 28 7-34 54-81 (110)
144 PF15023 DUF4523: Protein of u 25.4 1.3E+02 0.0028 22.0 3.8 36 7-43 125-160 (166)
145 COG1278 CspC Cold shock protei 25.2 27 0.00059 21.8 0.3 14 4-17 10-23 (67)
146 KOG0128 RNA-binding protein SA 24.6 25 0.00055 31.9 0.1 45 4-48 774-818 (881)
147 TIGR00405 L26e_arch ribosomal 24.0 84 0.0018 21.6 2.6 25 6-30 37-61 (145)
148 KOG4307 RNA binding protein RB 22.6 1.3E+02 0.0029 27.3 4.0 33 7-40 40-72 (944)
149 KOG2591 c-Mpl binding protein, 20.8 46 0.00099 29.2 0.8 27 11-37 216-244 (684)
No 1
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2e-12 Score=98.38 Aligned_cols=57 Identities=26% Similarity=0.525 Sum_probs=50.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc------cccCcccchhcc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS------IIAPTFQVMERA 60 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k------~~~~~~~~~~~a 60 (112)
++|||||||+|.-.++|..||.+||+..|+||+|+|++|.|.+++ .|++++|.-..+
T Consensus 49 qkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kikegsqkPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 49 QKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKEGSQKPVWADDDWLKKQQ 111 (298)
T ss_pred ccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccCCCCCCcccCcHHHHHhc
Confidence 789999999999999999999999999999999999999999888 577765544443
No 2
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=5.6e-10 Score=95.14 Aligned_cols=63 Identities=54% Similarity=0.900 Sum_probs=59.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCcccchhcccchhHHHHHHHHHHHhhchhccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRARTAAQFTDEVNG 83 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 83 (112)
+.|||||||+|.++.+|.+|+.+|.++||+||+| |++||..+..++.++.+.++.+.+....
T Consensus 652 ~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrL------------------VLEwA~~d~~~e~~r~r~Aak~~~~~~~ 713 (725)
T KOG0110|consen 652 GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRL------------------VLEWAKSDNTMEALRERTAAKFHDQEAA 713 (725)
T ss_pred hhhccceeeeccCcHHHHHHHHhhcccceechhh------------------heehhccchHHHHHHHHHHHHhhccccc
Confidence 6789999999999999999999999999999999 9999999999999999999998877665
Q ss_pred c
Q 036201 84 F 84 (112)
Q Consensus 84 ~ 84 (112)
.
T Consensus 714 ~ 714 (725)
T KOG0110|consen 714 N 714 (725)
T ss_pred c
Confidence 4
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.81 E-value=1.3e-08 Score=72.28 Aligned_cols=42 Identities=33% Similarity=0.642 Sum_probs=39.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|+.|+..||+..|.|+.|+|.++.++
T Consensus 73 g~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 789999999999999999999999999999999988877654
No 4
>smart00361 RRM_1 RNA recognition motif.
Probab=98.80 E-value=1.2e-08 Score=63.65 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V 39 (112)
|.++|||||+|.+.++|..|+..|||..+.||.|++
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999999999999999999999999999965
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.76 E-value=1.5e-08 Score=78.99 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=39.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.+||||||+|.+.++|..|+..|||..|.||.|+|+|..++
T Consensus 308 ~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 308 NQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred CCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 789999999999999999999999999999999999887654
No 6
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.71 E-value=5.7e-08 Score=57.68 Aligned_cols=36 Identities=47% Similarity=0.752 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
+|++||+|.+.++|..|+..|||..+.|++|+|++|
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 599999999999999999999999999999988775
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.70 E-value=4.4e-08 Score=76.41 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=51.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc-----ccccCcccchhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII-----SIIAPTFQVMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~-----k~~~~~~~~~~~a~~~~~~~~~~~~ 72 (112)
|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.|... .+++. .+++..+.+++..+...
T Consensus 42 g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~---~l~~~~~~~~l~~~f~~ 112 (352)
T TIGR01661 42 GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVS---GLPKTMTQHELESIFSP 112 (352)
T ss_pred CccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEEC---CccccCCHHHHHHHHhc
Confidence 88999999999999999999999999999999999999987532 13333 44555555566665554
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=4e-08 Score=76.66 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=59.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCccc--chhcccchhHHHHHHHHHHHhh
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQ--VMERAKEGESLEELRARTAAQF 77 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~ 77 (112)
|.|-|||||.|..+++|+.||..|||..|..++|+|+||+|..-.+...-.. =++-..+..++|.+......-.
T Consensus 80 GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrII 155 (360)
T KOG0145|consen 80 GQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRII 155 (360)
T ss_pred ccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhh
Confidence 8999999999999999999999999999999999999999965443322222 2555677888999888765444
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.67 E-value=5e-08 Score=78.09 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=55.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc-----ccccCcccchhcccchhHHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII-----SIIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~-----k~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
|+++|||||+|.+.++|..|+..|||..|.++.|+|.++.|... ++++. .|++..++++|.++..+.
T Consensus 146 g~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~---nLp~~vtee~L~~~F~~f 217 (346)
T TIGR01659 146 GYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVT---NLPRTITDDQLDTIFGKY 217 (346)
T ss_pred CccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEe---CCCCcccHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999987432 23443 567777777787777654
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.7e-08 Score=75.19 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=40.9
Q ss_pred CC-CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 2 KF-GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 2 K~-g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|. |.+||||||.|.+.++|..||..|||+-.+.-.|+|.|+.|+
T Consensus 225 K~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 225 KETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred cccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 44 999999999999999999999999999999999988888875
No 11
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=8.6e-08 Score=75.52 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=47.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPT 53 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~ 53 (112)
|+++|||||+|....+...|.+..+|..|+|+.|.|++...+.+|.|.|-
T Consensus 140 gkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~PR 189 (335)
T KOG0113|consen 140 GKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLPR 189 (335)
T ss_pred CCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999999999988763
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=7.2e-08 Score=76.80 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=40.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
-|||||||+|++.++|++|-..|+|+++.||+|.|+.|.++.+-
T Consensus 134 GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n 177 (376)
T KOG0125|consen 134 GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHN 177 (376)
T ss_pred CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhcc
Confidence 37999999999999999999999999999999999999887543
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.45 E-value=4.4e-07 Score=75.57 Aligned_cols=81 Identities=27% Similarity=0.392 Sum_probs=57.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC----CeeEEEEeeeccccccccCcccchhcccchhHHHHHHHHHHHhhch
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY----GRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRARTAAQFTD 79 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~----gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 79 (112)
|+++|||||.|.+.++|..|+..|||..+. |+.|.| .|+....+.+........+...
T Consensus 216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v------------------~~a~~k~er~~~~~~~~~~~~~ 277 (562)
T TIGR01628 216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV------------------GRAQKRAEREAELRRKFEELQQ 277 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe------------------ecccChhhhHHHHHhhHHhhhh
Confidence 788999999999999999999999999999 999955 4444444333333333333333
Q ss_pred hcccccccccccccccccccccc
Q 036201 80 EVNGFQNSTKLSKKRKHMTILDE 102 (112)
Q Consensus 80 ~~~~~~~~~~~~~k~~~~~~~~~ 102 (112)
......++.+++.++...+++++
T Consensus 278 ~~~~~~~~~~l~V~nl~~~~~~~ 300 (562)
T TIGR01628 278 ERKMKAQGVNLYVKNLDDTVTDE 300 (562)
T ss_pred hhhcccCCCEEEEeCCCCccCHH
Confidence 33344556778888887777654
No 14
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.44 E-value=1.4e-07 Score=69.90 Aligned_cols=40 Identities=33% Similarity=0.635 Sum_probs=38.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
..++|||||+|.+.++|+.|++.||...|+||+|+|+.+.
T Consensus 48 ~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 48 QKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred ccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 6789999999999999999999999999999999999887
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.44 E-value=4.6e-07 Score=77.37 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=43.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIA 51 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~ 51 (112)
|++||||||+|.+.++|..||..|||..|.|+.|+|.++.+.+...|.
T Consensus 243 gksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~ 290 (612)
T TIGR01645 243 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQ 290 (612)
T ss_pred CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCC
Confidence 679999999999999999999999999999999999999886655544
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.4e-07 Score=72.41 Aligned_cols=43 Identities=26% Similarity=0.486 Sum_probs=39.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
++|||||||.|.+.++|++||..|||.-|.+|+|+-+||..++
T Consensus 101 ~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 101 GKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 8999999999999999999999999999999999888776544
No 17
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.41 E-value=5.3e-07 Score=54.25 Aligned_cols=35 Identities=37% Similarity=0.789 Sum_probs=33.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLI 38 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~ 38 (112)
+.++|||||+|.+.++|..|+..|||..+.|+.|+
T Consensus 36 ~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 36 GKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 67899999999999999999999999999999984
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=9e-07 Score=72.89 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=56.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC-CeeEEEEeeeccccccccCcccchhcccchhHHHHHHHHHHHhhchhcc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRARTAAQFTDEVN 82 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~-gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 82 (112)
|.+||||||.|.++++|+.||+.||++.|. |+.|.||.+..+- ..|+. .++-.+.++++.+.-++..+-+.++..
T Consensus 122 G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~-RLFiG---~IPK~k~keeIlee~~kVteGVvdViv 197 (506)
T KOG0117|consen 122 GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANC-RLFIG---NIPKTKKKEEILEEMKKVTEGVVDVIV 197 (506)
T ss_pred CCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecc-eeEec---cCCccccHHHHHHHHHhhCCCeeEEEE
Confidence 999999999999999999999999999885 9999998776531 12222 455556667766666666666665544
Q ss_pred c
Q 036201 83 G 83 (112)
Q Consensus 83 ~ 83 (112)
-
T Consensus 198 y 198 (506)
T KOG0117|consen 198 Y 198 (506)
T ss_pred e
Confidence 3
No 19
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.38 E-value=4.3e-07 Score=68.25 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=39.7
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 2 KFGNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 2 K~g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.|.|+|||||+|++.+.|.-|.+.||++.|+++.|.|-+--|.
T Consensus 87 rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 87 RTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 33999999999999999999999999999999999988766554
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.36 E-value=8.4e-07 Score=75.78 Aligned_cols=40 Identities=43% Similarity=0.664 Sum_probs=37.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+++|||||+|.+.++|..|+..|||..|.||.|+|.+..
T Consensus 146 gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 146 GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 8899999999999999999999999999999999998654
No 21
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=4.9e-07 Score=66.77 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=38.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
.+.|||||+|+++.+|+.|+..|||..|+|..|+|..+.-.+.
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 4689999999999999999999999999999999988876543
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=1e-06 Score=74.27 Aligned_cols=42 Identities=36% Similarity=0.595 Sum_probs=38.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+.+|||||.|....+|..|++.+||..|.||+|.|+||.+.
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 777899999999999999999999999999999988777663
No 23
>smart00360 RRM RNA recognition motif.
Probab=98.29 E-value=1.9e-06 Score=50.46 Aligned_cols=36 Identities=47% Similarity=0.803 Sum_probs=33.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V 39 (112)
+.++|||||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 35 ~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 35 GKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 567899999999999999999999999999999866
No 24
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.28 E-value=6.1e-07 Score=68.02 Aligned_cols=41 Identities=39% Similarity=0.636 Sum_probs=37.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
+.++|||||-|....+|+.|+++|+|..|+|+.|.|.+|.-
T Consensus 52 r~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 52 RQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 77999999999999999999999999999999998876643
No 25
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=3.9e-07 Score=67.82 Aligned_cols=40 Identities=25% Similarity=0.510 Sum_probs=37.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+|+||||+.|++..+.--|+.+|||..|.||+|+|+...
T Consensus 74 GKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 74 GKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred CcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 9999999999999999999999999999999999997554
No 26
>PLN03213 repressor of silencing 3; Provisional
Probab=98.24 E-value=2.6e-06 Score=71.48 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=35.4
Q ss_pred cceEEEEeCCH--HHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 7 RGFAFVEYVTK--QEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 7 rGfgFVef~s~--eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
||||||+|.+. .++..||..|||..+.||.|+|..|.|
T Consensus 48 RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 48 RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 89999999987 689999999999999999998888876
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.20 E-value=2.8e-06 Score=69.46 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=39.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 334 g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 334 GLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 78999999999999999999999999999999999999865
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.20 E-value=3.5e-06 Score=70.23 Aligned_cols=40 Identities=33% Similarity=0.557 Sum_probs=36.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.+|.
T Consensus 323 g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 323 GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 7899999999999999999999999999999999554443
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=98.19 E-value=4.7e-06 Score=49.00 Aligned_cols=36 Identities=47% Similarity=0.802 Sum_probs=33.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V 39 (112)
+.++|+|||+|.+.++|..|+..++|..+.|+.|.|
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 456899999999999999999999999999999865
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.18 E-value=3.1e-06 Score=68.46 Aligned_cols=41 Identities=34% Similarity=0.658 Sum_probs=38.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 225 g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 225 GRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68899999999999999999999999999999999999764
No 31
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.17 E-value=2.4e-06 Score=70.47 Aligned_cols=43 Identities=28% Similarity=0.580 Sum_probs=38.2
Q ss_pred CC-CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 2 KF-GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 2 K~-g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
++ |+.+||||++|.+.++|..|++.|||..+.||+|+|+|+..
T Consensus 54 ~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 54 RETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred ccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 35 99999999999999999999999999999999996655443
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.13 E-value=4.8e-06 Score=59.72 Aligned_cols=41 Identities=41% Similarity=0.682 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|.++|||||+|.+.+++..|+..++|..|.|+.|.|.++.+
T Consensus 154 ~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 154 GKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 88999999999999999999999999999999999988653
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.13 E-value=5.6e-06 Score=50.48 Aligned_cols=34 Identities=47% Similarity=0.859 Sum_probs=32.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L 37 (112)
|.++|+|||+|.+.++|..|+..++|..+.|+.|
T Consensus 36 ~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 36 GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 5678999999999999999999999999999998
No 34
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=2.6e-06 Score=60.97 Aligned_cols=41 Identities=37% Similarity=0.575 Sum_probs=38.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|-.+||++|+|.+.++|+.|+..|||..|.|..|.|+|+-.
T Consensus 111 Gy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 111 GYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred ccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 78899999999999999999999999999999998887754
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.05 E-value=6.8e-06 Score=69.92 Aligned_cols=65 Identities=29% Similarity=0.487 Sum_probs=48.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC-CeeEEEEeeeccccccccCcccchhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~-gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~ 72 (112)
|++||||||+|.+.++|+.||..||+..|. |+.|.|+.+.+. ...++. .+++..++++|.++..+
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~-~rLFVg---NLP~~~TeeeL~eeFsk 161 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDN-CRLFVG---GIPKNKKREEILEEFSK 161 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccC-ceeEee---cCCcchhhHHHHHHhhc
Confidence 889999999999999999999999999885 888888766542 223333 45555555555554444
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.05 E-value=1.6e-05 Score=64.28 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=36.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..||. |+|..|.|+.|.|.++..
T Consensus 128 ~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 128 RRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence 7899999999999999999996 899999999999987654
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.04 E-value=7.9e-06 Score=66.84 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=37.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+...||+||+|.+.++|..|+..|||..|.|+.|.|.|..+.
T Consensus 461 ~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 461 TPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred CCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 345799999999999999999999999999999988887654
No 38
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.04 E-value=9.9e-06 Score=55.66 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=37.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
.+|.|||.|++..+|..|+..|+|..++++.|.|-+.+|.
T Consensus 56 TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 56 TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 5899999999999999999999999999999999888774
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.01 E-value=1.1e-05 Score=68.65 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
..+|||||+|.+.++|..|+..|||..|.|+.|.|+++.|..
T Consensus 267 ~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 267 KIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred eecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 457999999999999999999999999999999999998854
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.99 E-value=1.4e-05 Score=64.16 Aligned_cols=41 Identities=39% Similarity=0.606 Sum_probs=36.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCC--eeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYG--RHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~g--r~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..||..||+..|.+ +.|.|.++..
T Consensus 232 g~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 232 GTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 7889999999999999999999999998876 6887776655
No 41
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=9.9e-06 Score=57.50 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=36.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
-.+-||+||+|.+.++|..|+..+||+.|..++|+|++..
T Consensus 75 ktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 75 KTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 3467999999999999999999999999999999887654
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=6.3e-06 Score=67.09 Aligned_cols=39 Identities=44% Similarity=0.682 Sum_probs=36.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+|+||+||+|+-++.|.-|++.|||..|.||.|+|..-
T Consensus 152 ~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 152 GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred ccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 899999999999999999999999999999999999743
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.96 E-value=1.7e-05 Score=68.27 Aligned_cols=38 Identities=39% Similarity=0.612 Sum_probs=36.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|.|||||+|.+.++|+.|+..|+|+.|.|+.|.|.++.
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 56999999999999999999999999999999999998
No 44
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=1.3e-05 Score=64.75 Aligned_cols=81 Identities=25% Similarity=0.308 Sum_probs=65.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCcccchhcccchhHHHHHHHHHHHhhchhccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRARTAAQFTDEVNG 83 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 83 (112)
|+++|||||.|.+.++|..|+..|||..+.+..+ +|..++.+.+.+.+..+...+.......
T Consensus 205 g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~------------------~V~~aqkk~e~~~~l~~~~~~~~~~~~~ 266 (369)
T KOG0123|consen 205 GKSKGFGFVNFENPEDAKKAVETLNGKIFGDKEL------------------YVGRAQKKSEREAELKRKFEQEFAKRSV 266 (369)
T ss_pred CCCCCccceeecChhHHHHHHHhccCCcCCccce------------------eecccccchhhHHHHhhhhHhhhhhccc
Confidence 7899999999999999999999999999999999 6666666666666666666666666666
Q ss_pred ccccccccccccccccccc
Q 036201 84 FQNSTKLSKKRKHMTILDE 102 (112)
Q Consensus 84 ~~~~~~~~~k~~~~~~~~~ 102 (112)
.++..+++.+++...+.++
T Consensus 267 ~~~~~nl~vknld~~~~~e 285 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDE 285 (369)
T ss_pred cccccccccccCccccchh
Confidence 6778999999977666554
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.95 E-value=3.1e-05 Score=45.65 Aligned_cols=36 Identities=44% Similarity=0.716 Sum_probs=33.3
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEE
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFS 40 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~ 40 (112)
.++|+|||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 458999999999999999999999999999999775
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=2.1e-05 Score=61.62 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=37.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
.+++|||||.+.+..+|..||..|||+.|.+|.|.|++-.
T Consensus 317 nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 317 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred ccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 6789999999999999999999999999999999988654
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.86 E-value=3.1e-05 Score=63.99 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=37.3
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
++|||||+|.+.++|..|+..|||..|.|+.|+|.++...
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4799999999999999999999999999999999988654
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.79 E-value=4.8e-05 Score=59.14 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=35.6
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
.++|||||+|.+.++|..|+. |||..|.|+.|.|..+..
T Consensus 41 ~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 41 ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 368999999999999999995 999999999999988763
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.73 E-value=4.3e-05 Score=64.20 Aligned_cols=42 Identities=38% Similarity=0.712 Sum_probs=39.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.++|||||+|.+.++|..|+..|||..|-||.|+|+....+
T Consensus 317 G~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 317 GRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred ccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 899999999999999999999999999999999999876553
No 50
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.70 E-value=2.6e-05 Score=59.78 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=35.6
Q ss_pred CC-CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 2 KF-GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 2 K~-g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|. |+|||||||+|.+.+.|.+|+...|.. |+||+..|+.|.-
T Consensus 48 ~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-IdGR~aNcnlA~l 90 (247)
T KOG0149|consen 48 KNTGRSKGYGFVTFRDAEAATRACKDPNPI-IDGRKANCNLASL 90 (247)
T ss_pred cCCccccceeeEEeecHHHHHHHhcCCCCc-ccccccccchhhh
Confidence 45 999999999999999999999876654 7999988876643
No 51
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.62 E-value=9e-05 Score=61.27 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=36.9
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCee------EEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRH------LIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~------L~V~~a~~~ 45 (112)
++|||||+|.+.++|..|+..|||..|.++. |+|+|+.++
T Consensus 435 ~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 4799999999999999999999999999984 999999875
No 52
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.57 E-value=8.8e-05 Score=57.70 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=34.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V 39 (112)
|+++|||||.|.+..++..|+..|||..+..|.|+.
T Consensus 229 gKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 229 GKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 999999999999999999999999999999999944
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.56 E-value=8e-05 Score=61.50 Aligned_cols=34 Identities=41% Similarity=0.556 Sum_probs=30.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCee-C--CeeE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHL-Y--GRHL 37 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l-~--gr~L 37 (112)
|.|||+|||.|.+.+-|..||+.|||+.- . ...|
T Consensus 162 ~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 162 GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred ccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 88999999999999999999999999653 3 4578
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.52 E-value=0.00015 Score=53.98 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=41.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISI 49 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~ 49 (112)
|.++|||||.|.+.+.+..|+..|||..++.|+|+|+++.....|+
T Consensus 136 g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 136 GNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 7899999999999999999999999999999999999998765443
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=0.00018 Score=56.69 Aligned_cols=50 Identities=34% Similarity=0.583 Sum_probs=40.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC-C--eeEEEEeeeccccccccCcccchhcccchhH--HHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY-G--RHLIFSVAHDQIISIIAPTFQVMERAKEGES--LEELRA 71 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~-g--r~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~--~~~~~~ 71 (112)
|.+||++||.|.+.-+|+.||.+|+|+.-. | ..| ||.+|.+++| +.+|++
T Consensus 57 g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL------------------VVK~ADTdkER~lRRMQQ 111 (371)
T KOG0146|consen 57 GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL------------------VVKFADTDKERTLRRMQQ 111 (371)
T ss_pred CCCCCceEEEeccchHHHHHHHHhcccccCCCCccce------------------EEEeccchHHHHHHHHHH
Confidence 789999999999999999999999997544 3 456 8888887765 444443
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.42 E-value=0.0001 Score=62.37 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=40.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
+.+||||||+|.-.++++.|+..++++.|.||.|.|.+|.++.
T Consensus 44 ~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~ 86 (678)
T KOG0127|consen 44 SEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRA 86 (678)
T ss_pred ccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccc
Confidence 5689999999999999999999999999999999999998754
No 57
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00024 Score=57.56 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=37.2
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|-|||||.|.++.+|..|+..||...+.|+.|++-|++..+.
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 779999999999999999999999999999997766665443
No 58
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00044 Score=54.40 Aligned_cols=40 Identities=30% Similarity=0.518 Sum_probs=35.5
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
+-+||+||-|.+++.|..||-.+|++.+.|..++++|-..
T Consensus 198 k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 198 KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred cccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 3579999999999999999999999999999997765543
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.22 E-value=0.00034 Score=53.19 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=38.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
.+.||-|||.|.+.+.|-.|+.+|+|..++|+.+++.||+..
T Consensus 49 ~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 49 PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 578999999999999999999999999999999988888764
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.00019 Score=56.52 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=38.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
..||.||||.|.+.-+++.||.+|||+.|..++|+|..-+|+
T Consensus 324 NQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 324 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred ccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 678999999999999999999999999999999988766654
No 61
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.06 E-value=0.0013 Score=50.82 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=34.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
+.++|||||+|.+++++..|+ .|||..|.+++|.|..+.
T Consensus 41 ~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 41 GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 556799999999999999998 699999999999987654
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.96 E-value=0.00098 Score=55.53 Aligned_cols=40 Identities=38% Similarity=0.606 Sum_probs=37.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|++||+|.|+|.+++.++.|++.||-+.+.||.|.|.-.+
T Consensus 83 GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 83 GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 8999999999999999999999999999999999875443
No 63
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=96.91 E-value=0.0015 Score=54.25 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=38.6
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+.|-||||-|.+.++|-.|++.+||..|.|..|.|..|.|.
T Consensus 291 k~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 291 KPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred cccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 45789999999999999999999999999999999999985
No 64
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.90 E-value=0.00096 Score=50.19 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=36.9
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
...||||+|+++.+|+.||..-||..+.|.+|+|.+++--
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3579999999999999999999999999999999998763
No 65
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.87 E-value=0.0014 Score=50.03 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=37.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.++||+||+|.+......|+. |||..|.|+.|.|.+..-+
T Consensus 140 ~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 140 GHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred CCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 7899999999999999999999 9999999999998766543
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0014 Score=53.46 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=39.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.+--||||+|.+.++|+.|...|++..|..|+|.|+|++..
T Consensus 278 gdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSV 319 (479)
T KOG0415|consen 278 GDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSV 319 (479)
T ss_pred cchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhh
Confidence 777889999999999999999999999999999999998763
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=0.0012 Score=54.15 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
+.|||||||+|.+..+...||..||-+.|.|..|+|..+.-.+.-
T Consensus 249 ~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 249 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred CCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCch
Confidence 679999999999999999999999999999999999766544433
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.35 E-value=0.0053 Score=51.28 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=34.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++| .|-|.++++|+.|+..|||..|.||.|.|.|+
T Consensus 572 GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 572 GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 77777 99999999999999999999999999999763
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.25 E-value=0.0048 Score=53.10 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=36.0
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.||||+|.+..+|..||..|+-+.|.||.|.|..+...
T Consensus 447 RCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 447 RCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred ceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 569999999999999999999999999999999887654
No 70
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.23 E-value=0.0091 Score=39.50 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=29.4
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
+.|.|+|-|.+.+.|..|.+.|+|-.+.|+.|.|++..
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 56889999999999999999999999999999998763
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.14 E-value=0.0021 Score=48.81 Aligned_cols=38 Identities=32% Similarity=0.614 Sum_probs=35.4
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
.||+||+|.+..+|..||..|||..|+|..+.|.++.+
T Consensus 35 ~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 35 NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 59999999999999999999999999999988888874
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.13 E-value=0.011 Score=51.96 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=50.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccccc-----ccC--cccchhcccchhHHHH
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISI-----IAP--TFQVMERAKEGESLEE 68 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~-----~~~--~~~~~~~a~~~~~~~~ 68 (112)
.+||+|||.+....+|++|+.+|+.+.+.+++|+|.|+...-++- |.- ..+++.|-+-..+++.
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~ 525 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEA 525 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHH
Confidence 368999999999999999999999999999999999998765553 221 2447888776655443
No 73
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.11 E-value=0.0029 Score=52.51 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=35.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|-++-||||.|++..+|.+||..|||..+.+++|+|-..
T Consensus 463 nlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk 501 (510)
T KOG0144|consen 463 NLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLK 501 (510)
T ss_pred CHhhhcCcccccchhhhHHHHHHhcchhhccccceEEee
Confidence 668899999999999999999999999999999987543
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.97 E-value=0.016 Score=38.86 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=27.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY 33 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~ 33 (112)
+.+.|||||.|.+++.+..-...++|..+.
T Consensus 42 ~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 42 KCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 457899999999999999999999998876
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.84 E-value=0.016 Score=44.81 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeC---CeeEEEEeeecc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLY---GRHLIFSVAHDQ 45 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~---gr~L~V~~a~~~ 45 (112)
+-+||++|.+.++|..|+.+|||..|+ +.+|.+.+|...
T Consensus 77 ~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSN 118 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSN 118 (284)
T ss_pred cceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcC
Confidence 358999999999999999999999997 788988887653
No 76
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=95.52 E-value=0.017 Score=46.01 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=36.4
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
-|-||||-.++...+..||.+|+|..|.|..|.|.-+..+
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred ecccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4689999999999999999999999999999999877654
No 77
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.25 E-value=0.011 Score=49.92 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=41.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.++||+|.+|.+......|+..|||..+.++.|.|-.|.+....
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 679999999999999999999999999999999999999886554
No 78
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=95.17 E-value=0.019 Score=45.72 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=36.1
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
-++|+||-|.-.++|..|+..||++.|.|+++.|..+.-+
T Consensus 111 vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 111 VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 4799999999999999999999999999999998766543
No 79
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.043 Score=47.09 Aligned_cols=38 Identities=26% Similarity=0.614 Sum_probs=33.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC-CeeEEEEe
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSV 41 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~-gr~L~V~~ 41 (112)
|.++||.|++|.+..+|..|++.|||..|+ .+++.|..
T Consensus 102 ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 102 GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred CCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 679999999999999999999999999988 45655543
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.65 E-value=0.051 Score=45.88 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=34.9
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|--||+|.+.++++.|+.+|+|..+.+|++...|.-+.++
T Consensus 455 GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 455 GKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred ccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 4569999999999999999999999999998877765543
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.56 E-value=0.2 Score=40.70 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=35.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
.+.|.+-|.|.+.++|..||..|+|..|.||.|..+..-.
T Consensus 312 hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 312 HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 4569999999999999999999999999999997665443
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.84 E-value=0.035 Score=42.22 Aligned_cols=33 Identities=42% Similarity=0.741 Sum_probs=31.9
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEE
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V 39 (112)
++++||+|...+++..|+..|+|..+.++.|.|
T Consensus 133 ~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 133 RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 799999999999999999999999999999977
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=93.67 E-value=0.021 Score=45.52 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=35.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
+++|||+||+|.+.+....++.. .-++|.|+.|-+-.|.|+...
T Consensus 45 ~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 45 GRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSREDQ 88 (311)
T ss_pred CCcccccceecCCCcchheeecc-cccccCCccccceeccCcccc
Confidence 88999999999998888777653 346689999988888876533
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.54 E-value=0.18 Score=40.95 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=39.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+.+|=|.|.|.-.++..-|+..|++..|.|+.|+|..|+-+
T Consensus 180 G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 180 GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQ 221 (382)
T ss_pred CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhh
Confidence 888999999999999999999999999999999999988764
No 85
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=93.47 E-value=0.15 Score=39.44 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.+.|.|=|.|...++|..|++.+||+.|+|+.|++....+..+.
T Consensus 121 G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 121 GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQS 165 (243)
T ss_pred CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcccc
Confidence 889999999999999999999999999999999998776665444
No 86
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.79 E-value=0.15 Score=41.45 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=33.0
Q ss_pred CcceEEEEeCCHHHHHHHHH-hhCCCeeCCeeEEEEeeec
Q 036201 6 HRGFAFVEYVTKQEAQNALE-ALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~-~lng~~l~gr~L~V~~a~~ 44 (112)
.+|.|||+|.+...|+.|.. .+|-..+.|++|+|-|..|
T Consensus 263 ~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 46899999999999998665 5565778999999998888
No 87
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.64 E-value=0.16 Score=41.87 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=35.6
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeeCCe--eEEEEeeeccccc
Q 036201 9 FAFVEYVTKQEAQNALEALSNTHLYGR--HLIFSVAHDQIIS 48 (112)
Q Consensus 9 fgFVef~s~eda~~Ai~~lng~~l~gr--~L~V~~a~~~~~k 48 (112)
-|.|+|.+.+.|++|-.+|||..|+.- +|+|.||.|.+.-
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceee
Confidence 589999999999999999999999854 8999999996544
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=92.42 E-value=0.28 Score=41.39 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=51.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc----cccC----ccc-----chhcccchhHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS----IIAP----TFQ-----VMERAKEGESLEELR 70 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k----~~~~----~~~-----~~~~a~~~~~~~~~~ 70 (112)
|+..|=|||+|.+.++++.|++. +-.++..|-|.|-.+.+..++ ...+ .+. =|+|+-++++|.+..
T Consensus 46 Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FF 124 (510)
T KOG4211|consen 46 GRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFF 124 (510)
T ss_pred CCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHh
Confidence 88999999999999999999984 777788999999888775544 1111 122 278888888877654
Q ss_pred H
Q 036201 71 A 71 (112)
Q Consensus 71 ~ 71 (112)
+
T Consensus 125 a 125 (510)
T KOG4211|consen 125 A 125 (510)
T ss_pred c
Confidence 3
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=92.41 E-value=0.074 Score=42.44 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=37.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
.+++|||||+|.+.+....++. ...+.|+|+.+.|..|.|+-+.
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 6789999999999988887765 4678899999999999996544
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.33 E-value=0.18 Score=41.26 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=30.8
Q ss_pred EEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 11 FVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 11 FVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
||+|.+.++|..||...+|+.++||.|+..|-.
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 999999999999999999999999999887653
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=91.65 E-value=0.24 Score=42.21 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=34.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|-|+-||-|.+.+.|..|+.+|||..|.||.|+..|-.
T Consensus 489 s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 489 SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 34999999999999999999999999999999877654
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=91.36 E-value=0.12 Score=39.95 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=33.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
++.+ ||||.|.+.-...-|+..+||..|.++.|.|.+-+
T Consensus 47 ~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 47 QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 5566 99999999999999999999999999988665443
No 93
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.01 E-value=0.32 Score=30.42 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=21.4
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
.-|+||+.... .+..++..|++..+.|++|+|..|
T Consensus 40 ~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 40 DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46899999875 688899999999999999987654
No 94
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=88.75 E-value=0.98 Score=32.47 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=29.5
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+--+|+|.+-+.|-+|+. ++|..++|+.|+|..-.|.
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 346899999999999986 8999999999999877763
No 95
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.51 E-value=0.98 Score=28.18 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=26.5
Q ss_pred EEEEeCCHHHHHHHHHhhCCCeeCCeeEE
Q 036201 10 AFVEYVTKQEAQNALEALSNTHLYGRHLI 38 (112)
Q Consensus 10 gFVef~s~eda~~Ai~~lng~~l~gr~L~ 38 (112)
=||.|.+..+|+.+..+.+|..+.+.+|.
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 38999999999999999999999988873
No 96
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=87.91 E-value=0.36 Score=39.15 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+.+||=|.|.|.+...|+.||..+++..+++.+|+|..|.-+
T Consensus 113 ~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 113 GAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred cCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence 788999999999999999999999999999999988777654
No 97
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.44 E-value=0.7 Score=37.14 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=31.8
Q ss_pred EEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 10 AFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 10 gFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
-||+|...++|-.|+-.|||..|.||.+..+|.+-
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 59999999999999999999999999998777654
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=87.09 E-value=1 Score=37.27 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=36.3
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
...|.|.|++.+..+.++|+..||+..|.|.+|.|++++.
T Consensus 323 Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 323 TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4469999999999999999999999999999999988754
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.08 E-value=0.31 Score=41.58 Aligned_cols=34 Identities=35% Similarity=0.670 Sum_probs=31.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEE
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLI 38 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~ 38 (112)
.++|-.||+|.+..+|+.|+++||+.++.|+.|+
T Consensus 110 ~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 110 NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3679999999999999999999999999999987
No 100
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=87.06 E-value=0.67 Score=41.03 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
+.+-+|||-|-+..+++.|++.|+|..++++.+++.|..+.+
T Consensus 217 r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 217 RERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVP 258 (877)
T ss_pred cccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence 345789999999999999999999999999999998886543
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=86.27 E-value=1.2 Score=37.27 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
+--|.|.|.+...|.-|+..|+|..|+|+.|+|.++.-
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 35699999999999999999999999999999988753
No 102
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=84.81 E-value=0.97 Score=37.56 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=30.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEe
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSV 41 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~ 41 (112)
++...||||+|.+..++..||.+ +-..|.+++|.|.-
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 44458999999999999999987 47788899997753
No 103
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=81.41 E-value=1.2 Score=34.89 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=33.5
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
+|=.||.|...++|+.|+..||+-.+.|++|...+...
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 57789999999999999999999999999997665544
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=78.01 E-value=0.74 Score=36.20 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=38.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.++|||||.|.....+..++.. ....+.++++.+.+..|++..
T Consensus 224 ~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 224 GDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred cchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 77899999999999999998877 788899999988888876533
No 105
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.78 E-value=4.7 Score=29.80 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=29.7
Q ss_pred ceEEEEeCCHHHHHHHHHhhC--CCeeCCeeEEEEeeecccc
Q 036201 8 GFAFVEYVTKQEAQNALEALS--NTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~ln--g~~l~gr~L~V~~a~~~~~ 47 (112)
+-..|.|.+.++|..|...|+ +..+.|..|+|.|+.+...
T Consensus 32 rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 32 RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 446899999999999999999 9999999999999977554
No 106
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=77.58 E-value=11 Score=31.30 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=30.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHL 37 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L 37 (112)
|.|+|||+|...+.......++.|.-..|.|..-
T Consensus 121 GQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 121 GQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred CcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 8999999999999988888999888888888864
No 107
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=75.77 E-value=3.6 Score=35.29 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeC
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLY 33 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~ 33 (112)
..-|||||.|.+.+++-...+++||....
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 35699999999999999999999997543
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=75.59 E-value=4.4 Score=31.03 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=30.8
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeC-CeeEEEEee
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVA 42 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~-gr~L~V~~a 42 (112)
+|.|||+|.+...+..|...|.|..+. ...+.|.++
T Consensus 183 ~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 183 SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 588999999999999999999998876 777766655
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=71.13 E-value=7.1 Score=34.91 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFS 40 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~ 40 (112)
|..-|=+-|-|++.++|..|...|++..|..|++++.
T Consensus 906 G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 906 GVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 7788999999999999999999999999999998764
No 110
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=68.01 E-value=7.5 Score=34.03 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=35.7
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCee---CCeeEEEEeeeccccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHL---YGRHLIFSVAHDQIIS 48 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l---~gr~L~V~~a~~~~~k 48 (112)
-+..|||.|.+.++|.+.+.+|+|..+ +.+.|.+.|....-++
T Consensus 480 IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 480 IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELD 525 (718)
T ss_pred hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHH
Confidence 456799999999999999999999876 4788998888764433
No 111
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=66.29 E-value=3.7 Score=34.64 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=36.2
Q ss_pred cceEEEEeCCHHHHHHHHHhhCC-CeeCCeeEEEEeeeccc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQI 46 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng-~~l~gr~L~V~~a~~~~ 46 (112)
-||+||.+.+..-+..|++.++| ..+.|+++.|.+..|.+
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 48999999999999999999999 57899999999988854
No 112
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=64.65 E-value=14 Score=24.65 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=16.4
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCC
Q 036201 8 GFAFVEYVTKQEAQNALEALSNT 30 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~ 30 (112)
.-|||-|.+++.|+.|+..+.-.
T Consensus 38 ~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 38 TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp SEEEEEESS---HHHHHHHHHHT
T ss_pred CEEEEEECCcchHHHHHHHHHhc
Confidence 36899999999999998877654
No 113
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=61.82 E-value=9 Score=32.60 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|++-|=|||.|.+.+.++.|+.. |-.++..|-|-|..+.-
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHH
Confidence 67778999999999999999875 55667778887765543
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=57.48 E-value=4.8 Score=36.27 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=25.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRH 36 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~ 36 (112)
++-||+||++|..++++.+||...+++ +.|+.
T Consensus 706 ~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~gK~ 737 (881)
T KOG0128|consen 706 KRFRGKAYVEFLKPEHAGAAVAFRDSC-FFGKI 737 (881)
T ss_pred cccccceeeEeecCCchhhhhhhhhhh-hhhhh
Confidence 678999999999999999999865555 44443
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=56.03 E-value=12 Score=31.42 Aligned_cols=42 Identities=33% Similarity=0.351 Sum_probs=35.6
Q ss_pred CC-CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCe-eEEEEeee
Q 036201 2 KF-GNHRGFAFVEYVTKQEAQNALEALSNTHLYGR-HLIFSVAH 43 (112)
Q Consensus 2 K~-g~srGfgFVef~s~eda~~Ai~~lng~~l~gr-~L~V~~a~ 43 (112)
|+ ++.+-++++.+.+.++|-.|+-.++.+.+.+. .|+|+|+.
T Consensus 446 kff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 446 KFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred eecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 34 66777999999999999999999988888754 89999875
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=53.04 E-value=26 Score=23.38 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.4
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCeeE
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHL 37 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~L 37 (112)
.+--|.|.++.+|.+|+.. ||..|.|..+
T Consensus 55 NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 55 NWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp TEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 5778999999999999984 9999998765
No 117
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.62 E-value=3.8 Score=33.11 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.1
Q ss_pred EEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 10 AFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 10 gFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
++|+|...++|..||...+|+.+.|+.|+.++..+.
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 799999999999999999999999999877766553
No 118
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=49.00 E-value=17 Score=27.66 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=24.9
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCC
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYG 34 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~g 34 (112)
-|+|.|+|...++++.|+..|+.+.+..
T Consensus 150 Dg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 150 DGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ccceeeeeeehhhHHHHHHhhccccccC
Confidence 3799999999999999999999987653
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=48.97 E-value=9.2 Score=31.98 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+.-|=|||.|.+.+.|..|....+.+...+|.|.|-.+.
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 6777999999999999999988877776668888765443
No 120
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=44.50 E-value=47 Score=21.03 Aligned_cols=30 Identities=13% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY 33 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~ 33 (112)
...+||-|||=.+..+...|+..+.+....
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 346899999999999999998877765433
No 121
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=43.42 E-value=5 Score=31.59 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHhhCCCeeCCee
Q 036201 10 AFVEYVTKQEAQNALEALSNTHLYGRH 36 (112)
Q Consensus 10 gFVef~s~eda~~Ai~~lng~~l~gr~ 36 (112)
|+|+|.+...|..+...||+..|.|+.
T Consensus 131 GWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 131 GWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 789999999999999999999999986
No 122
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=40.47 E-value=23 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=9.3
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
..++|||||...+
T Consensus 5 ~~~~GfGFv~~~~ 17 (58)
T PF08206_consen 5 IHPKGFGFVIPDD 17 (58)
T ss_dssp E-SSS-EEEEECT
T ss_pred EEcCCCEEEEECC
Confidence 3578999999987
No 123
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=38.52 E-value=31 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=16.0
Q ss_pred CcceEEEEeCCHHHHHHHH
Q 036201 6 HRGFAFVEYVTKQEAQNAL 24 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai 24 (112)
..-+.||.|.+..+|+.|+
T Consensus 35 ~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 35 STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCcEEEEEECCHHHHHhhC
Confidence 3568999999999999874
No 124
>PRK15464 cold shock-like protein CspH; Provisional
Probab=37.14 E-value=18 Score=22.53 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=9.8
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...||||||.=.+
T Consensus 13 n~~KGfGFI~~~~ 25 (70)
T PRK15464 13 DRKSGKGFIIPSD 25 (70)
T ss_pred ECCCCeEEEccCC
Confidence 3468999997655
No 125
>PRK15463 cold shock-like protein CspF; Provisional
Probab=36.64 E-value=19 Score=22.30 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=9.9
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...||||||+=.+
T Consensus 13 n~~kGfGFI~~~~ 25 (70)
T PRK15463 13 DGKSGKGLITPSD 25 (70)
T ss_pred eCCCceEEEecCC
Confidence 3458999998755
No 126
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=35.98 E-value=19 Score=22.68 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=9.7
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...||||||.=.+
T Consensus 10 n~~KGfGFI~~~~ 22 (74)
T PRK09937 10 NNAKGFGFICPEG 22 (74)
T ss_pred eCCCCeEEEeeCC
Confidence 4568999996643
No 127
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.69 E-value=58 Score=19.84 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.8
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCeeE
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHL 37 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~L 37 (112)
.+.+|.|.|..+|-.|-+.|....+..+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 478999999999999999888877777766
No 128
>PRK14998 cold shock-like protein CspD; Provisional
Probab=35.06 E-value=23 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=9.9
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...||||||.=.+
T Consensus 10 n~~kGfGFI~~~~ 22 (73)
T PRK14998 10 NNAKGFGFICPEG 22 (73)
T ss_pred eCCCceEEEecCC
Confidence 4568999997654
No 129
>PRK10943 cold shock-like protein CspC; Provisional
Probab=34.98 E-value=21 Score=22.01 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=9.8
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...||||||.=.+
T Consensus 12 ~~~kGfGFI~~~~ 24 (69)
T PRK10943 12 NESKGFGFITPAD 24 (69)
T ss_pred eCCCCcEEEecCC
Confidence 3468999998654
No 130
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=34.61 E-value=21 Score=21.93 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=9.9
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...||||||.=.+
T Consensus 12 ~~~kGyGFI~~~~ 24 (69)
T PRK09507 12 NESKGFGFITPED 24 (69)
T ss_pred eCCCCcEEEecCC
Confidence 3468999998655
No 131
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=33.75 E-value=67 Score=24.14 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=33.0
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCe-eEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGR-HLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr-~L~V~~a~~~ 45 (112)
+.++--|.|.++..|..|.-.+.++.|.|. .++.-++++.
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 345567899999999999999999999998 7777777663
No 132
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=33.25 E-value=23 Score=21.77 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.1
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..+|||||.=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK10354 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 458999998654
No 133
>PRK09890 cold shock protein CspG; Provisional
Probab=33.17 E-value=23 Score=21.83 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.4
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..+|||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK09890 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 458999998764
No 134
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=32.98 E-value=22 Score=21.75 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.2
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...+|||||.=.+
T Consensus 10 ~~~kGfGFI~~~~ 22 (68)
T TIGR02381 10 NNAKGFGFICPEG 22 (68)
T ss_pred eCCCCeEEEecCC
Confidence 4568999998765
No 135
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.90 E-value=65 Score=24.84 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=22.5
Q ss_pred EEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 10 AFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 10 gFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|||+|.+..+|+.|.+.+.... .+.+.|..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999998655443 344445444
No 136
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.76 E-value=52 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=20.9
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCC
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNT 30 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~ 30 (112)
-+||-||+.....++..++..+.|.
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 4799999999888888888877664
No 137
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=70 Score=28.11 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=27.6
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEE
Q 036201 9 FAFVEYVTKQEAQNALEALSNTHLYGRHLIFS 40 (112)
Q Consensus 9 fgFVef~s~eda~~Ai~~lng~~l~gr~L~V~ 40 (112)
||.|+|.+...|.+....++|..+..--..++
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 79999999999999999999999876555543
No 138
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=29.91 E-value=45 Score=19.67 Aligned_cols=13 Identities=15% Similarity=0.554 Sum_probs=10.2
Q ss_pred CCcceEEEEeCCH
Q 036201 5 NHRGFAFVEYVTK 17 (112)
Q Consensus 5 ~srGfgFVef~s~ 17 (112)
..+|||||.-.+.
T Consensus 10 ~~kgyGFI~~~~~ 22 (66)
T PF00313_consen 10 DEKGYGFITSDDG 22 (66)
T ss_dssp TTTTEEEEEETTS
T ss_pred CCCCceEEEEccc
Confidence 4689999998763
No 139
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=28.48 E-value=35 Score=20.11 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=9.7
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..+|||||.-.+
T Consensus 10 ~~kGfGFI~~~~ 21 (65)
T cd04458 10 DEKGFGFITPDD 21 (65)
T ss_pred CCCCeEEEecCC
Confidence 358999998876
No 140
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=28.42 E-value=35 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeeC
Q 036201 9 FAFVEYVTKQEAQNALEALSNTHLY 33 (112)
Q Consensus 9 fgFVef~s~eda~~Ai~~lng~~l~ 33 (112)
.+|++|...+.|..|+..|.|..|.
T Consensus 250 vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 250 VAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred eEeecHHHHHHHHHHHHHhhcceec
Confidence 6899999999899898888887654
No 141
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=27.99 E-value=65 Score=19.73 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.3
Q ss_pred EEEEeCCHHHHHHHHHhh
Q 036201 10 AFVEYVTKQEAQNALEAL 27 (112)
Q Consensus 10 gFVef~s~eda~~Ai~~l 27 (112)
+=|.|.+...|..|+.+|
T Consensus 45 cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 45 CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEECCHHHHHHHHHcC
Confidence 568899999999998764
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=26.87 E-value=30 Score=31.67 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=35.0
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCC--eeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYG--RHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~g--r~L~V~~a~~~ 45 (112)
..-|+||.|++...++.|+..|.|..|.| +.|.|+++.+.
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 34699999999999999999999999984 67999998763
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=26.19 E-value=1.1e+02 Score=20.70 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=23.9
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCC
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYG 34 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~g 34 (112)
+=-..+.|.+...|..-...+||..+..
T Consensus 54 rymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 54 RYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3347889999999999999999988764
No 144
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=25.36 E-value=1.3e+02 Score=21.95 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=28.3
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|--|.|.|.+..+|=.|+.++.. ..-|..+.+++-+
T Consensus 125 rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 125 RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 34689999999999999998876 5577887666544
No 145
>COG1278 CspC Cold shock proteins [Transcription]
Probab=25.20 E-value=27 Score=21.85 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=10.5
Q ss_pred CCCcceEEEEeCCH
Q 036201 4 GNHRGFAFVEYVTK 17 (112)
Q Consensus 4 g~srGfgFVef~s~ 17 (112)
...+|||||+=.+-
T Consensus 10 n~~KGfGFI~p~~G 23 (67)
T COG1278 10 NATKGFGFITPEDG 23 (67)
T ss_pred eCCCcceEcCCCCC
Confidence 45789999887654
No 146
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=24.59 E-value=25 Score=31.89 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|-+||.|.+..++..++..++...+.-+.+.|..++|.+-|
T Consensus 774 gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 774 GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcccc
Confidence 889999999999999999998888888888888888888885433
No 147
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=24.00 E-value=84 Score=21.60 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=19.8
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCC
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNT 30 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~ 30 (112)
-+||-||++....+...++..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 4799999999877777888776663
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=22.57 E-value=1.3e+02 Score=27.27 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=26.1
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEE
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFS 40 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~ 40 (112)
-|=+||.|.+-+||.-|+-. ++.+|.|-.+++-
T Consensus 40 ~GeaFI~FsTDeDARlaM~k-dr~~i~g~~VrLl 72 (944)
T KOG4307|consen 40 EGEAFIGFSTDEDARLAMTK-DRLMIHGAEVRLL 72 (944)
T ss_pred ccceEEEecccchhhhhhhh-cccceecceEEEE
Confidence 57899999999999998754 5667787766543
No 149
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=20.78 E-value=46 Score=29.18 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEeCCHHHHHHHHHhhCC--CeeCCeeE
Q 036201 11 FVEYVTKQEAQNALEALSN--THLYGRHL 37 (112)
Q Consensus 11 FVef~s~eda~~Ai~~lng--~~l~gr~L 37 (112)
||+|++..||+.|...|.. ..|.|+.|
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 8999999999999887765 35566655
Done!