Query 036201
Match_columns 112
No_of_seqs 174 out of 1521
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.2 2E-11 6.7E-16 79.7 5.7 41 4-44 58-98 (99)
2 2lxi_A RNA-binding protein 10; 99.1 8.2E-11 2.8E-15 75.4 5.4 43 4-46 41-84 (91)
3 3p5t_L Cleavage and polyadenyl 99.1 2.6E-11 9E-16 77.1 2.6 45 4-48 42-86 (90)
4 2wbr_A GW182, gawky, LD47780P; 99.1 1.4E-10 4.7E-15 75.9 5.4 39 5-43 41-79 (89)
5 3bs9_A Nucleolysin TIA-1 isofo 99.1 1.8E-10 6.1E-15 72.0 5.6 43 4-46 45-87 (87)
6 3lqv_A PRE-mRNA branch site pr 99.1 2.5E-10 8.6E-15 75.1 5.6 64 4-73 44-107 (115)
7 3md1_A Nuclear and cytoplasmic 99.0 2.9E-10 1E-14 70.4 5.6 42 4-45 40-81 (83)
8 2lkz_A RNA-binding protein 5; 99.0 2.1E-10 7.2E-15 74.8 4.8 40 4-43 50-93 (95)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.0 4E-10 1.4E-14 72.6 6.1 47 4-50 51-97 (102)
10 3ns6_A Eukaryotic translation 99.0 1.3E-10 4.4E-15 75.5 3.7 41 4-44 51-92 (100)
11 1x5t_A Splicing factor 3B subu 99.0 4.9E-10 1.7E-14 71.3 6.1 45 4-48 45-89 (96)
12 2x1f_A MRNA 3'-END-processing 99.0 5.6E-10 1.9E-14 71.4 6.3 44 4-47 41-84 (96)
13 2cpi_A CCR4-NOT transcription 99.0 5.5E-10 1.9E-14 73.6 6.3 43 5-47 61-103 (111)
14 2fc8_A NCL protein; structure 99.0 4.5E-10 1.5E-14 72.3 5.5 44 4-47 51-94 (102)
15 1oo0_B CG8781-PA, drosophila Y 99.0 7.1E-10 2.4E-14 72.4 6.4 44 4-47 65-108 (110)
16 3s8s_A Histone-lysine N-methyl 99.0 5.5E-10 1.9E-14 74.2 5.7 40 4-43 45-84 (110)
17 2a3j_A U1 small nuclear ribonu 99.0 3.9E-10 1.3E-14 77.2 5.0 43 4-46 69-111 (127)
18 2pe8_A Splicing factor 45; RRM 99.0 4.4E-10 1.5E-14 74.4 5.0 44 4-47 53-96 (105)
19 2do4_A Squamous cell carcinoma 99.0 5.8E-10 2E-14 71.7 5.3 44 4-47 55-98 (100)
20 2dgw_A Probable RNA-binding pr 99.0 6.4E-10 2.2E-14 70.4 5.3 42 4-46 47-88 (91)
21 2cpe_A RNA-binding protein EWS 99.0 8E-10 2.7E-14 72.5 5.9 44 4-47 62-105 (113)
22 2e5j_A Methenyltetrahydrofolat 99.0 4.7E-10 1.6E-14 72.0 4.6 44 4-47 53-96 (97)
23 2cq0_A Eukaryotic translation 99.0 1E-09 3.5E-14 70.9 6.2 45 4-48 54-98 (103)
24 2fc9_A NCL protein; structure 99.0 1.1E-09 3.7E-14 70.5 6.2 45 4-48 50-94 (101)
25 3n9u_C Cleavage and polyadenyl 99.0 3.8E-10 1.3E-14 79.3 4.3 42 4-45 96-137 (156)
26 1whw_A Hypothetical protein ri 99.0 9.2E-10 3.2E-14 70.5 5.7 45 4-48 47-91 (99)
27 4a8x_A RNA-binding protein wit 99.0 7.7E-10 2.6E-14 69.1 5.2 41 6-46 46-86 (88)
28 1fjc_A Nucleolin RBD2, protein 99.0 5.7E-10 2E-14 71.1 4.7 43 4-46 50-92 (96)
29 1p27_B RNA-binding protein 8A; 99.0 6.3E-10 2.2E-14 72.1 4.8 43 4-46 62-104 (106)
30 2cqp_A RNA-binding protein 12; 99.0 1.1E-09 3.7E-14 70.0 5.7 42 4-45 54-95 (98)
31 4f25_A Polyadenylate-binding p 99.0 7.3E-10 2.5E-14 73.5 5.1 42 4-45 42-83 (115)
32 2dnz_A Probable RNA-binding pr 99.0 1.1E-09 3.7E-14 69.5 5.6 45 4-48 44-88 (95)
33 1jmt_A Splicing factor U2AF 35 99.0 8.6E-10 2.9E-14 72.8 5.2 39 4-42 65-103 (104)
34 2cph_A RNA binding motif prote 99.0 1.2E-09 4.1E-14 70.7 5.8 44 4-47 55-99 (107)
35 2dgs_A DAZ-associated protein 98.9 1.5E-09 5E-14 69.7 6.1 45 4-49 49-93 (99)
36 2cpx_A Hypothetical protein FL 98.9 1.1E-09 3.8E-14 71.8 5.6 45 4-48 64-108 (115)
37 1fj7_A Nucleolin RBD1, protein 98.9 6.2E-10 2.1E-14 71.6 4.3 42 4-46 55-96 (101)
38 2dng_A Eukaryotic translation 98.9 1.3E-09 4.3E-14 70.5 5.8 44 4-48 53-96 (103)
39 2la6_A RNA-binding protein FUS 98.9 8.2E-10 2.8E-14 71.0 4.6 39 4-42 60-98 (99)
40 1x5s_A Cold-inducible RNA-bind 98.9 1.2E-09 4E-14 70.3 5.3 44 4-47 51-94 (102)
41 3mdf_A Peptidyl-prolyl CIS-tra 98.9 1.4E-09 4.7E-14 67.6 5.4 39 4-42 46-84 (85)
42 1nu4_A U1A RNA binding domain; 98.9 6.8E-10 2.3E-14 70.7 4.1 43 4-46 48-90 (97)
43 2e5h_A Zinc finger CCHC-type a 98.9 2E-09 6.7E-14 68.2 6.1 39 4-42 55-93 (94)
44 2nlw_A Eukaryotic translation 98.9 6.6E-10 2.2E-14 72.6 3.9 41 4-44 58-99 (105)
45 3v4m_A Splicing factor U2AF 65 98.9 1.3E-09 4.5E-14 72.1 5.4 43 5-47 57-99 (105)
46 2cq3_A RNA-binding protein 9; 98.9 2.7E-09 9.2E-14 68.8 6.7 48 4-51 52-99 (103)
47 2dgo_A Cytotoxic granule-assoc 98.9 1.4E-09 4.9E-14 71.4 5.4 45 4-48 54-98 (115)
48 2err_A Ataxin-2-binding protei 98.9 1.5E-09 5.1E-14 71.4 5.5 43 4-46 66-108 (109)
49 1x5u_A Splicing factor 3B subu 98.9 1.1E-09 3.7E-14 70.8 4.7 45 4-48 54-98 (105)
50 2dgx_A KIAA0430 protein; RRM d 98.9 1.8E-09 6.2E-14 69.3 5.7 41 7-47 52-92 (96)
51 2cpz_A CUG triplet repeat RNA- 98.9 1.6E-09 5.6E-14 71.3 5.5 45 4-48 64-108 (115)
52 2jrs_A RNA-binding protein 39; 98.9 9.2E-10 3.1E-14 72.5 4.3 42 4-45 65-106 (108)
53 2cpf_A RNA binding motif prote 98.9 1.5E-09 5E-14 69.4 5.0 44 5-48 48-91 (98)
54 2jvr_A Nucleolar protein 3; RN 98.9 1.9E-09 6.7E-14 72.2 5.8 42 4-45 64-105 (111)
55 2cqc_A Arginine/serine-rich sp 98.9 2E-09 6.7E-14 68.2 5.6 40 4-43 54-93 (95)
56 3egn_A RNA-binding protein 40; 98.9 1.7E-09 5.8E-14 73.8 5.6 42 4-45 89-130 (143)
57 1wi8_A EIF-4B, eukaryotic tran 98.9 1.9E-09 6.4E-14 69.8 5.5 44 4-48 54-97 (104)
58 1p1t_A Cleavage stimulation fa 98.9 8.8E-10 3E-14 71.0 3.9 42 4-45 47-88 (104)
59 1x5p_A Negative elongation fac 98.9 3.2E-09 1.1E-13 68.0 6.3 45 4-48 46-90 (97)
60 2ek1_A RNA-binding protein 12; 98.9 2.1E-09 7.2E-14 68.2 5.4 40 4-43 54-93 (95)
61 2d9p_A Polyadenylate-binding p 98.9 1.8E-09 6.3E-14 69.6 5.2 44 4-47 52-95 (103)
62 2dis_A Unnamed protein product 98.9 1.6E-09 5.6E-14 70.4 4.9 43 4-46 49-93 (109)
63 2dgv_A HnRNP M, heterogeneous 98.9 1E-09 3.6E-14 69.2 3.7 42 4-45 45-86 (92)
64 2kn4_A Immunoglobulin G-bindin 98.9 2.5E-09 8.5E-14 73.7 5.9 43 4-46 109-151 (158)
65 1x4h_A RNA-binding protein 28; 98.9 2.8E-09 9.6E-14 69.4 5.8 44 4-47 54-103 (111)
66 2fy1_A RNA-binding motif prote 98.9 1.9E-09 6.5E-14 71.8 5.1 44 4-47 45-88 (116)
67 2dnm_A SRP46 splicing factor; 98.9 1.3E-09 4.5E-14 70.3 4.2 44 4-47 52-95 (103)
68 2j76_E EIF-4B, EIF4B, eukaryot 98.9 1.3E-09 4.4E-14 70.5 4.0 41 4-45 58-98 (100)
69 2cqi_A Nucleolysin TIAR; RNA r 98.9 3.9E-09 1.3E-13 68.1 6.3 44 4-47 52-95 (103)
70 3ucg_A Polyadenylate-binding p 98.9 2.2E-09 7.6E-14 67.2 5.0 41 4-45 45-85 (89)
71 1x4a_A Splicing factor, argini 98.9 3.1E-09 1.1E-13 69.3 5.9 43 4-46 58-100 (109)
72 3ex7_B RNA-binding protein 8A; 98.9 2.3E-09 7.9E-14 71.5 5.3 45 4-48 61-105 (126)
73 1fje_B Nucleolin RBD12, protei 98.9 2.3E-09 7.8E-14 74.1 5.4 43 4-46 133-175 (175)
74 2ki2_A SS-DNA binding protein 98.9 1.1E-09 3.7E-14 69.0 3.4 44 4-48 40-83 (90)
75 2krb_A Eukaryotic translation 98.9 7.9E-10 2.7E-14 68.7 2.5 36 4-39 44-80 (81)
76 2kt5_A RNA and export factor-b 98.9 3.6E-09 1.2E-13 70.6 5.9 43 4-46 73-115 (124)
77 2div_A TRNA selenocysteine ass 98.9 1.6E-09 5.4E-14 69.3 4.0 42 4-45 49-94 (99)
78 2dnh_A Bruno-like 5, RNA bindi 98.9 2.2E-09 7.4E-14 69.4 4.7 44 4-47 53-99 (105)
79 2cqh_A IGF-II mRNA-binding pro 98.9 3E-09 1E-13 67.5 5.2 44 6-49 43-87 (93)
80 2dgp_A Bruno-like 4, RNA bindi 98.9 3.9E-09 1.3E-13 68.3 5.5 44 4-47 52-98 (106)
81 2dit_A HIV TAT specific factor 98.9 5.1E-09 1.7E-13 69.1 6.2 42 5-46 62-103 (112)
82 2kxn_B Transformer-2 protein h 98.8 2.6E-09 9E-14 72.6 4.8 43 4-46 85-127 (129)
83 2do0_A HnRNP M, heterogeneous 98.8 4.3E-09 1.5E-13 68.9 5.6 44 4-47 53-96 (114)
84 1u6f_A Tcubp1, RNA-binding pro 98.8 3E-09 1E-13 72.0 5.0 45 4-48 81-125 (139)
85 2ywk_A Putative RNA-binding pr 98.8 3E-09 1E-13 67.5 4.6 40 4-43 54-93 (95)
86 1rk8_A CG8781-PA, CG8781-PA pr 98.8 4E-09 1.4E-13 73.8 5.7 43 4-46 111-153 (165)
87 2la4_A Nuclear and cytoplasmic 98.8 2.2E-09 7.6E-14 69.0 4.0 40 5-44 61-100 (101)
88 1wg1_A KIAA1579 protein, homol 98.8 3.9E-09 1.3E-13 66.6 4.9 41 5-45 38-78 (88)
89 3ulh_A THO complex subunit 4; 98.8 4.7E-09 1.6E-13 68.0 5.4 40 4-43 67-106 (107)
90 2cpd_A Apobec-1 stimulating pr 98.8 7.3E-09 2.5E-13 66.4 6.2 43 5-47 49-91 (99)
91 2jwn_A Embryonic polyadenylate 98.8 6E-09 2E-13 69.3 5.7 42 4-46 75-116 (124)
92 2m2b_A RNA-binding protein 10; 98.8 1.7E-09 5.9E-14 73.1 3.1 44 4-48 64-111 (131)
93 2dhg_A TRNA selenocysteine ass 98.8 1.8E-09 6.2E-14 69.7 2.9 43 4-46 48-91 (104)
94 2khc_A Testis-specific RNP-typ 98.8 3.8E-09 1.3E-13 69.7 4.4 39 4-42 79-117 (118)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 6E-09 2.1E-13 70.1 5.5 39 4-42 102-140 (140)
96 3ue2_A Poly(U)-binding-splicin 98.8 3.7E-09 1.3E-13 71.6 4.4 43 4-46 68-110 (118)
97 1h2v_Z 20 kDa nuclear CAP bind 98.8 6.9E-09 2.4E-13 71.7 5.8 43 4-46 78-120 (156)
98 2mss_A Protein (musashi1); RNA 98.8 3.4E-09 1.2E-13 64.6 3.7 38 4-42 38-75 (75)
99 2cq4_A RNA binding motif prote 98.8 2.6E-09 8.9E-14 70.2 3.3 42 4-46 64-105 (114)
100 2db1_A Heterogeneous nuclear r 98.8 3.1E-09 1.1E-13 70.9 3.7 41 4-45 58-98 (118)
101 2dnn_A RNA-binding protein 12; 98.8 6.9E-09 2.3E-13 69.1 5.1 41 4-45 53-93 (109)
102 2xnq_A Nuclear polyadenylated 98.8 1.1E-08 3.7E-13 66.0 5.9 40 6-45 56-95 (97)
103 3md3_A Nuclear and cytoplasmic 98.8 8E-09 2.7E-13 70.1 5.4 41 4-44 126-166 (166)
104 2bz2_A Negative elongation fac 98.8 7.5E-09 2.6E-13 69.7 5.1 43 5-47 71-113 (121)
105 1wel_A RNA-binding protein 12; 98.8 4E-09 1.4E-13 70.5 3.6 40 4-44 64-103 (124)
106 2lmi_A GRSF-1, G-rich sequence 98.8 2.3E-09 7.9E-14 70.1 2.3 41 4-45 52-92 (107)
107 2cpy_A RNA-binding protein 12; 98.8 4.8E-09 1.6E-13 69.3 3.9 41 4-45 54-94 (114)
108 3r27_A HnRNP L, heterogeneous 98.8 8.2E-09 2.8E-13 68.4 4.8 42 5-46 55-98 (100)
109 1fxl_A Paraneoplastic encephal 98.8 1.6E-08 5.5E-13 68.6 6.3 67 4-73 41-112 (167)
110 1why_A Hypothetical protein ri 98.8 9.7E-09 3.3E-13 65.6 4.9 41 6-46 52-94 (97)
111 1x5o_A RNA binding motif, sing 98.8 7.9E-09 2.7E-13 67.7 4.6 42 4-45 63-112 (114)
112 2lea_A Serine/arginine-rich sp 98.8 5.3E-09 1.8E-13 71.5 3.8 43 4-46 86-128 (135)
113 1x4g_A Nucleolysin TIAR; struc 98.7 1.5E-08 5E-13 66.2 5.6 42 6-47 60-101 (109)
114 2cpj_A Non-POU domain-containi 98.7 8.1E-09 2.8E-13 66.2 4.3 42 5-46 49-90 (99)
115 1whx_A Hypothetical protein ri 98.7 1.5E-08 5E-13 67.0 5.7 43 5-47 44-86 (111)
116 2i2y_A Fusion protein consists 98.7 9.6E-09 3.3E-13 70.5 4.9 41 6-46 109-149 (150)
117 2hgl_A HNRPF protein, heteroge 98.7 3.8E-09 1.3E-13 73.1 2.8 41 4-45 85-125 (136)
118 2cqd_A RNA-binding region cont 98.7 1.2E-08 4.2E-13 67.1 5.2 41 4-45 56-96 (116)
119 2jvo_A Nucleolar protein 3; nu 98.7 1.3E-08 4.4E-13 67.0 5.2 40 7-46 65-104 (108)
120 2cq1_A PTB-like protein L; RRM 98.7 2.1E-08 7.1E-13 65.9 6.2 45 6-50 50-96 (101)
121 1x4b_A Heterogeneous nuclear r 98.7 1.2E-08 4.2E-13 67.1 5.1 43 4-47 66-108 (116)
122 2dnq_A RNA-binding protein 4B; 98.7 1.2E-08 4.1E-13 64.3 4.9 42 7-48 42-83 (90)
123 2rs2_A Musashi-1, RNA-binding 98.7 1.5E-08 5.3E-13 66.6 5.5 42 4-46 64-105 (109)
124 2lcw_A RNA-binding protein FUS 98.2 1.1E-09 3.9E-14 72.3 0.0 43 4-46 54-96 (116)
125 2dh8_A DAZ-associated protein 98.7 5.4E-09 1.8E-13 67.6 3.1 43 4-47 55-97 (105)
126 1s79_A Lupus LA protein; RRM, 98.7 5.6E-09 1.9E-13 68.6 3.3 38 4-42 49-86 (103)
127 2diu_A KIAA0430 protein; struc 98.7 9.6E-09 3.3E-13 68.0 4.2 40 7-46 46-85 (96)
128 1b7f_A Protein (SXL-lethal pro 98.7 2.3E-08 7.9E-13 68.1 6.3 66 4-72 42-112 (168)
129 1wg5_A Heterogeneous nuclear r 98.7 1.1E-08 3.8E-13 66.5 4.5 43 4-47 54-96 (104)
130 3pgw_S U1-70K; protein-RNA com 98.7 1.7E-08 5.8E-13 81.3 6.5 49 4-52 141-189 (437)
131 2dgt_A RNA-binding protein 30; 98.7 2.7E-08 9.1E-13 63.0 5.8 42 6-47 43-84 (92)
132 2dnp_A RNA-binding protein 14; 98.7 2.5E-08 8.5E-13 62.9 5.6 42 6-47 42-83 (90)
133 3q2s_C Cleavage and polyadenyl 98.7 5.6E-09 1.9E-13 77.4 3.0 42 4-45 109-150 (229)
134 2qfj_A FBP-interacting repress 98.7 1.3E-08 4.5E-13 72.1 4.8 45 4-48 164-208 (216)
135 1sjq_A Polypyrimidine tract-bi 98.7 1.1E-08 3.9E-13 68.2 4.2 44 6-49 51-96 (105)
136 2hvz_A Splicing factor, argini 98.7 7.9E-09 2.7E-13 66.4 3.3 41 6-46 36-76 (101)
137 2dgu_A Heterogeneous nuclear r 98.7 2.6E-08 8.8E-13 64.4 5.7 43 6-48 44-86 (103)
138 1fje_B Nucleolin RBD12, protei 98.7 3.1E-08 1.1E-12 68.4 6.4 68 4-72 51-122 (175)
139 2cjk_A Nuclear polyadenylated 98.7 1.3E-08 4.3E-13 69.6 4.3 41 4-45 126-166 (167)
140 3s6e_A RNA-binding protein 39; 98.7 1.5E-08 5.1E-13 68.2 4.6 42 6-47 54-95 (114)
141 2yh0_A Splicing factor U2AF 65 98.7 1.2E-08 4.1E-13 71.4 4.2 43 4-46 153-195 (198)
142 2kvi_A Nuclear polyadenylated 98.7 1.5E-08 5.1E-13 64.8 4.2 41 6-46 44-84 (96)
143 4f02_A Polyadenylate-binding p 98.7 1.3E-08 4.5E-13 73.4 4.4 41 4-44 140-180 (213)
144 1x4d_A Matrin 3; structural ge 98.7 1.6E-08 5.4E-13 66.9 4.4 41 5-45 50-92 (102)
145 1wez_A HnRNP H', FTP-3, hetero 98.7 1E-08 3.4E-13 67.0 3.3 42 4-46 52-93 (102)
146 1wf1_A RNA-binding protein RAL 98.7 1.4E-08 4.7E-13 66.4 3.9 41 6-46 61-101 (110)
147 3md3_A Nuclear and cytoplasmic 98.7 5.3E-08 1.8E-12 65.9 7.0 69 4-72 38-110 (166)
148 1x4e_A RNA binding motif, sing 98.7 3.4E-09 1.2E-13 66.0 0.8 38 4-41 44-81 (85)
149 2g4b_A Splicing factor U2AF 65 98.7 1.6E-08 5.4E-13 69.4 4.3 39 4-42 133-171 (172)
150 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.1E-08 3.6E-13 62.4 3.0 38 4-42 39-76 (77)
151 2ytc_A PRE-mRNA-splicing facto 98.7 2.5E-08 8.4E-13 61.9 4.8 37 6-42 47-84 (85)
152 1x4f_A Matrin 3; structural ge 98.7 1.6E-08 5.4E-13 68.1 3.9 43 5-47 60-104 (112)
153 2cq2_A Hypothetical protein LO 98.7 2.5E-08 8.5E-13 67.5 4.9 40 6-45 62-106 (114)
154 1x4c_A Splicing factor, argini 98.6 3.9E-08 1.3E-12 64.2 5.2 39 8-46 51-94 (108)
155 2f3j_A RNA and export factor b 98.6 4.4E-08 1.5E-12 69.9 5.6 43 4-46 126-168 (177)
156 2ad9_A Polypyrimidine tract-bi 98.6 2.7E-08 9.3E-13 67.6 4.3 44 6-49 66-111 (119)
157 2d9o_A DNAJ (HSP40) homolog, s 98.6 4.6E-08 1.6E-12 64.4 5.2 43 4-48 51-93 (100)
158 1wex_A Hypothetical protein (r 98.6 2.3E-08 8E-13 65.9 3.8 43 6-48 50-94 (104)
159 2hzc_A Splicing factor U2AF 65 98.6 5.2E-08 1.8E-12 60.6 5.1 36 5-41 51-86 (87)
160 3s7r_A Heterogeneous nuclear r 98.6 4.4E-08 1.5E-12 61.1 4.7 38 4-42 50-87 (87)
161 2ghp_A U4/U6 snRNA-associated 98.6 4.6E-08 1.6E-12 72.9 5.4 41 4-45 251-291 (292)
162 2g4b_A Splicing factor U2AF 65 98.6 7.7E-08 2.6E-12 65.9 6.0 66 4-73 48-118 (172)
163 1sjr_A Polypyrimidine tract-bi 98.6 5.4E-08 1.8E-12 69.7 5.3 42 5-46 82-125 (164)
164 2cqg_A TDP-43, TAR DNA-binding 98.6 7.5E-08 2.6E-12 61.9 5.5 41 4-46 54-94 (103)
165 1iqt_A AUF1, heterogeneous nuc 98.6 2.5E-08 8.7E-13 60.5 3.0 38 4-42 38-75 (75)
166 3zzy_A Polypyrimidine tract-bi 98.6 6.9E-08 2.4E-12 66.7 5.4 43 5-47 63-108 (130)
167 4f02_A Polyadenylate-binding p 98.6 1.1E-07 3.7E-12 68.6 6.1 67 4-73 54-127 (213)
168 3smz_A Protein raver-1, ribonu 98.6 7E-08 2.4E-12 71.7 5.2 42 4-45 223-264 (284)
169 2yh0_A Splicing factor U2AF 65 98.5 9.7E-08 3.3E-12 66.8 5.4 41 4-45 48-88 (198)
170 3pgw_A U1-A; protein-RNA compl 98.5 1.1E-07 3.8E-12 70.5 5.9 43 4-46 49-91 (282)
171 2hgm_A HNRPF protein, heteroge 98.5 2.2E-08 7.4E-13 68.6 1.9 41 4-45 81-121 (126)
172 1b7f_A Protein (SXL-lethal pro 98.5 7.1E-08 2.4E-12 65.7 4.4 39 4-42 128-168 (168)
173 2qfj_A FBP-interacting repress 98.5 1E-07 3.5E-12 67.5 5.3 43 4-46 67-109 (216)
174 3tyt_A Heterogeneous nuclear r 98.5 1.2E-07 4.1E-12 68.9 5.6 40 5-44 40-79 (205)
175 2dha_A FLJ20171 protein; RRM d 98.5 2.3E-08 7.8E-13 68.0 1.5 40 4-44 65-104 (123)
176 2hgn_A Heterogeneous nuclear r 98.5 2.2E-08 7.4E-13 69.5 1.3 42 4-46 83-124 (139)
177 1fxl_A Paraneoplastic encephal 98.5 8.6E-08 2.9E-12 64.9 4.3 39 4-42 127-167 (167)
178 2e5i_A Heterogeneous nuclear r 98.5 1.3E-07 4.5E-12 64.6 5.1 40 7-46 61-103 (124)
179 3nmr_A Cugbp ELAV-like family 98.5 1.2E-07 4.1E-12 64.8 4.4 39 4-42 133-174 (175)
180 1l3k_A Heterogeneous nuclear r 98.5 1.4E-07 4.9E-12 65.8 4.9 41 4-45 143-183 (196)
181 3dxb_A Thioredoxin N-terminall 98.5 1.1E-07 3.7E-12 69.0 3.9 43 4-46 172-214 (222)
182 2e44_A Insulin-like growth fac 98.5 2.9E-07 1E-11 58.3 5.4 40 6-45 53-92 (96)
183 1l3k_A Heterogeneous nuclear r 98.4 2.7E-07 9.3E-12 64.3 5.6 65 4-72 52-127 (196)
184 2xs2_A Deleted in azoospermia- 98.4 6.5E-08 2.2E-12 62.1 2.1 40 4-45 47-86 (102)
185 3smz_A Protein raver-1, ribonu 98.4 4.3E-07 1.5E-11 67.4 6.4 65 4-72 54-118 (284)
186 3sde_A Paraspeckle component 1 98.4 4E-07 1.4E-11 67.6 6.1 65 4-72 55-119 (261)
187 1qm9_A Polypyrimidine tract-bi 98.4 2.5E-07 8.5E-12 65.1 4.1 40 6-45 157-197 (198)
188 2adc_A Polypyrimidine tract-bi 98.4 3.6E-07 1.2E-11 66.4 5.0 41 5-45 187-228 (229)
189 2ghp_A U4/U6 snRNA-associated 98.4 4.5E-07 1.6E-11 67.5 5.5 69 4-72 156-234 (292)
190 3beg_B Splicing factor, argini 98.4 3.7E-07 1.3E-11 60.4 4.4 37 8-44 52-93 (115)
191 3u1l_A PRE-mRNA-splicing facto 98.3 3.6E-07 1.2E-11 68.8 4.5 40 5-44 177-228 (240)
192 3nmr_A Cugbp ELAV-like family 98.3 5.2E-07 1.8E-11 61.6 4.9 66 5-73 45-119 (175)
193 2dnl_A Cytoplasmic polyadenyla 98.3 4.5E-07 1.5E-11 59.7 4.1 39 4-44 49-87 (114)
194 2adc_A Polypyrimidine tract-bi 98.3 8.6E-07 2.9E-11 64.4 5.6 39 7-45 72-110 (229)
195 1qm9_A Polypyrimidine tract-bi 98.3 7.3E-07 2.5E-11 62.7 4.9 39 7-45 41-79 (198)
196 2e5g_A U6 snRNA-specific termi 98.3 5.3E-07 1.8E-11 57.2 3.6 39 9-48 47-85 (94)
197 2cjk_A Nuclear polyadenylated 98.3 6.9E-07 2.4E-11 60.8 4.1 65 4-73 42-111 (167)
198 3d2w_A TAR DNA-binding protein 98.3 1.4E-06 4.7E-11 55.3 5.0 39 5-47 46-86 (89)
199 2j8a_A Histone-lysine N-methyl 98.2 5.8E-07 2E-11 62.7 3.4 42 4-45 45-96 (136)
200 3pgw_A U1-A; protein-RNA compl 98.2 1.4E-06 4.8E-11 64.5 5.4 37 7-43 244-281 (282)
201 2voo_A Lupus LA protein; RNA-b 98.2 1.1E-06 3.9E-11 63.2 4.7 39 4-43 147-185 (193)
202 2dnr_A Synaptojanin-1; RRM dom 98.2 1.4E-06 4.8E-11 57.0 4.4 37 8-45 50-86 (91)
203 3sde_A Paraspeckle component 1 98.2 3.4E-06 1.1E-10 62.5 6.3 42 4-45 134-179 (261)
204 3tyt_A Heterogeneous nuclear r 98.0 9.5E-06 3.3E-10 58.7 5.2 32 4-35 162-193 (205)
205 3tht_A Alkylated DNA repair pr 97.9 1E-05 3.5E-10 63.7 5.5 40 6-45 55-99 (345)
206 1wf0_A TDP-43, TAR DNA-binding 97.9 3.7E-06 1.3E-10 52.5 2.2 39 5-47 40-80 (88)
207 1ufw_A Synaptojanin 2; RNP dom 97.6 4.5E-05 1.6E-09 50.1 3.9 34 9-43 60-93 (95)
208 2kn4_A Immunoglobulin G-bindin 97.3 0.00016 5.4E-09 49.3 3.8 67 4-73 10-94 (158)
209 2i2y_A Fusion protein consists 97.3 0.00012 4.3E-09 49.7 2.7 66 4-73 10-97 (150)
210 1owx_A Lupus LA protein, SS-B, 95.1 0.059 2E-06 36.3 6.1 33 8-40 56-91 (121)
211 2l9w_A U4/U6 snRNA-associated- 95.1 0.041 1.4E-06 37.2 5.0 34 8-41 63-96 (117)
212 1wey_A Calcipressin 1; structu 93.6 0.061 2.1E-06 35.6 3.3 37 10-46 49-85 (104)
213 2g0c_A ATP-dependent RNA helic 67.7 3.3 0.00011 24.5 2.2 35 7-42 40-74 (76)
214 3p3d_A Nucleoporin 53; structu 61.8 12 0.00041 25.4 4.4 32 7-39 62-93 (132)
215 2lea_A Serine/arginine-rich sp 60.9 1.9 6.5E-05 28.4 0.2 61 9-73 6-71 (135)
216 2dhx_A Poly (ADP-ribose) polym 44.6 30 0.001 22.5 4.0 37 8-45 48-84 (104)
217 3lpe_A Putative transcription 42.3 21 0.00072 22.2 2.9 25 6-30 49-73 (92)
218 1wwh_A Nucleoporin 35, nucleop 41.8 28 0.00097 23.1 3.6 28 8-36 60-87 (119)
219 2k5n_A Putative cold-shock pro 36.6 14 0.00048 22.3 1.3 12 5-16 12-23 (74)
220 2kcm_A Cold shock domain famil 35.0 15 0.00053 22.1 1.3 13 4-16 9-21 (74)
221 3cam_A Cold-shock domain famil 34.9 16 0.00054 21.5 1.3 13 4-16 10-22 (67)
222 1c9o_A CSPB, cold-shock protei 34.9 16 0.00054 21.3 1.3 12 5-16 11-22 (66)
223 1uw4_A UPF3X; nonsense mediate 33.8 38 0.0013 21.2 3.1 26 8-33 46-71 (91)
224 3a0j_A Cold shock protein; OB- 33.7 17 0.00057 21.7 1.3 13 4-16 10-22 (73)
225 1h95_A CSD, Y-box binding prot 33.1 18 0.00062 21.9 1.4 12 5-16 18-29 (79)
226 3ulj_A LIN28B, DNA-binding pro 32.7 13 0.00046 23.3 0.8 11 4-14 17-27 (90)
227 1g6p_A Cold shock protein TMCS 32.5 18 0.00062 21.1 1.3 13 4-16 9-21 (66)
228 3i2z_B RNA chaperone, negative 31.0 20 0.00068 21.2 1.3 12 5-16 15-26 (71)
229 3p8b_B Transcription antitermi 29.3 41 0.0014 22.4 2.9 25 6-30 42-66 (152)
230 2yty_A Cold shock domain-conta 27.3 25 0.00084 21.8 1.3 10 7-16 28-37 (88)
231 2ytx_A Cold shock domain-conta 26.9 25 0.00086 22.2 1.3 11 6-16 27-37 (97)
232 1wfq_A UNR protein; beta-barre 26.1 27 0.00091 21.7 1.3 10 7-16 28-37 (89)
233 2l08_A Regulator of nonsense t 25.8 57 0.002 20.8 2.9 27 8-34 54-80 (97)
234 3h7h_B Transcription elongatio 25.2 44 0.0015 21.5 2.3 27 5-31 49-75 (106)
235 1whv_A Poly(A)-specific ribonu 24.3 63 0.0021 20.9 2.9 20 9-28 51-70 (100)
236 3aqq_A Calcium-regulated heat 23.5 36 0.0012 23.3 1.7 12 5-16 72-83 (147)
237 2ytv_A Cold shock domain-conta 23.1 30 0.001 21.0 1.1 11 6-16 17-27 (79)
238 1x65_A UNR protein; cell-free 22.7 29 0.00099 21.6 1.0 10 7-16 18-27 (89)
239 2lss_A Cold shock-like protein 27.6 19 0.00065 21.3 0.0 13 4-16 13-25 (70)
240 2exu_A Transcription initiatio 21.3 66 0.0023 23.1 2.8 26 6-31 148-173 (200)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.21 E-value=2e-11 Score=79.73 Aligned_cols=41 Identities=32% Similarity=0.581 Sum_probs=39.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..|+..|||..|.|++|+|.+|.|
T Consensus 58 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 88999999999999999999999999999999999999887
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.12 E-value=8.2e-11 Score=75.44 Aligned_cols=43 Identities=30% Similarity=0.515 Sum_probs=39.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhC-CCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALS-NTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~ln-g~~l~gr~L~V~~a~~~~ 46 (112)
|.+||||||+|.+.++|..|++.++ +..|.|++|.|.+|.|++
T Consensus 41 ~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 41 GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred CCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 8899999999999999999999874 568999999999998864
No 3
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.11 E-value=2.6e-11 Score=77.09 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|.+..
T Consensus 42 g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 42 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred CccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 889999999999999999999999999999999999999886543
No 4
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.08 E-value=1.4e-10 Score=75.89 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=35.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
.|||||||+|.+.++|..|++.|||..|.||+|+|.+|.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 489999999999999999999999999999999766553
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.08 E-value=1.8e-10 Score=72.00 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=38.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+++
T Consensus 45 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 45 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 7789999999999999999999999999999999999887753
No 6
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.05 E-value=2.5e-10 Score=75.11 Aligned_cols=64 Identities=27% Similarity=0.318 Sum_probs=50.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCcccchhcccchhHHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
+.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.|..... .+.....++++++++.+.
T Consensus 44 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~------~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 44 PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAFQ------KMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHTT------TSCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhhh------hhhHhHhHHHHHHHHHHh
Confidence 5679999999999999999999999999999999999998865442 233334445566555544
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.05 E-value=2.9e-10 Score=70.42 Aligned_cols=42 Identities=33% Similarity=0.654 Sum_probs=39.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|+
T Consensus 40 ~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 40 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 778999999999999999999999999999999999988875
No 8
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=74.79 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=36.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCC----eeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNT----HLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~----~l~gr~L~V~~a~ 43 (112)
|++||||||+|.+.++|..|++.|||. .|.||+|.|++|.
T Consensus 50 g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 50 QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 889999999999999999999999997 4899999887765
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=4e-10 Score=72.56 Aligned_cols=47 Identities=32% Similarity=0.599 Sum_probs=43.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISII 50 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~ 50 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|...+.+
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 51 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKES 97 (102)
T ss_dssp CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCCC
Confidence 77899999999999999999999999999999999999998766543
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.04 E-value=1.3e-10 Score=75.49 Aligned_cols=41 Identities=24% Similarity=0.452 Sum_probs=38.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCC-eeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYG-RHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~g-r~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..|+..|||..|.| +.|.|.++.|
T Consensus 51 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 51 GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 7899999999999999999999999999999 9997777765
No 11
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=4.9e-10 Score=71.31 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=41.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...+
T Consensus 45 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 45 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred CCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 788999999999999999999999999999999999999886544
No 12
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.02 E-value=5.6e-10 Score=71.39 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=41.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 41 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 41 GRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 78899999999999999999999999999999999999988643
No 13
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=5.5e-10 Score=73.62 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=40.0
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+++.
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 5679999999999999999999999999999999999988753
No 14
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=4.5e-10 Score=72.34 Aligned_cols=44 Identities=25% Similarity=0.507 Sum_probs=40.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|+..
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 77899999999999999999999999999999999999988643
No 15
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.01 E-value=7.1e-10 Score=72.39 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=40.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+++.
T Consensus 65 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 65 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 78899999999999999999999999999999999999887643
No 16
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.00 E-value=5.5e-10 Score=74.21 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 45 g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 45 RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 7899999999999999999999999999999999665443
No 17
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=3.9e-10 Score=77.20 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=39.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.++.++.
T Consensus 69 ~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 69 DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 6889999999999999999999999999999999888777643
No 18
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.99 E-value=4.4e-10 Score=74.45 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
++++|||||+|.+.++|..|+..|||..+.||.|.|.++.+..+
T Consensus 53 ~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 53 DDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 96 (105)
T ss_dssp TTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHH
T ss_pred CCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHh
Confidence 57899999999999999999999999999999999999877543
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=5.8e-10 Score=71.69 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=40.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|++.
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 55 GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 67899999999999999999999999999999999999988653
No 20
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=6.4e-10 Score=70.35 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=39.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+. |||..|.|+.|.|.++.+++
T Consensus 47 g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 47 GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 7889999999999999999999 99999999999999998764
No 21
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=8e-10 Score=72.46 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=41.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 78899999999999999999999999999999999999887643
No 22
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.7e-10 Score=72.00 Aligned_cols=44 Identities=27% Similarity=0.261 Sum_probs=40.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
++++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|++.
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 56799999999999999999999999999999999999988643
No 23
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1e-09 Score=70.87 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=41.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++...
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 54 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 788999999999999999999999999999999999999886543
No 24
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=70.48 Aligned_cols=45 Identities=22% Similarity=0.500 Sum_probs=41.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++...
T Consensus 50 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 50 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp SCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 788999999999999999999999999999999999999886443
No 25
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.97 E-value=3.8e-10 Score=79.34 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=39.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.+.
T Consensus 96 g~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 96 GQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 889999999999999999999999999999999988777654
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=9.2e-10 Score=70.47 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++...
T Consensus 47 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 47 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp CCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred CCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 788999999999999999999999999999999999999886543
No 27
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.97 E-value=7.7e-10 Score=69.06 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=38.8
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|..
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 89999999999999999999999999999999999998754
No 28
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.97 E-value=5.7e-10 Score=71.10 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=40.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|+.
T Consensus 50 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 50 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 6789999999999999999999999999999999999988754
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=6.3e-10 Score=72.08 Aligned_cols=43 Identities=33% Similarity=0.488 Sum_probs=40.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+++
T Consensus 62 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 62 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 7889999999999999999999999999999999999988754
No 30
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=1.1e-09 Score=70.04 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=39.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++
T Consensus 54 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 54 GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 778999999999999999999999999999999999888754
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.96 E-value=7.3e-10 Score=73.55 Aligned_cols=42 Identities=21% Similarity=0.471 Sum_probs=38.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+.+||||||+|.+.++|..|+..|||..|.|+.|.|.++.++
T Consensus 42 ~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 42 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 457999999999999999999999999999999988777654
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-09 Score=69.53 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=41.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.++.++...
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 44 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 788999999999999999999999999999999999999886543
No 33
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.95 E-value=8.6e-10 Score=72.76 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=36.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+..|||..+.||.|.|.++
T Consensus 65 ~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 678999999999999999999999999999999988764
No 34
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=1.2e-09 Score=70.71 Aligned_cols=44 Identities=50% Similarity=0.961 Sum_probs=41.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhh-CCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEAL-SNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~l-ng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..| ||..|.|+.|.|.++.+...
T Consensus 55 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 55 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred CCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 788999999999999999999999 99999999999999988643
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=69.65 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=41.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISI 49 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~ 49 (112)
|+++|||||+|.+.++|..|+. |||..|.|+.|.|.++.|+....
T Consensus 49 ~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 49 QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence 7899999999999999999998 99999999999999998875543
No 36
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.1e-09 Score=71.85 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=41.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+....
T Consensus 64 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 64 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 778999999999999999999999999999999999999886544
No 37
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.95 E-value=6.2e-10 Score=71.65 Aligned_cols=42 Identities=21% Similarity=0.555 Sum_probs=39.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+. |||..|.|+.|.|.++.++.
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 7889999999999999999999 99999999999999988754
No 38
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=1.3e-09 Score=70.52 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=40.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.+....
T Consensus 53 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 53 DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred CccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 788999999999999999999 89999999999999999886544
No 39
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.94 E-value=8.2e-10 Score=70.97 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=37.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.+|
T Consensus 60 g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 60 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp CSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 788999999999999999999999999999999988776
No 40
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.2e-09 Score=70.32 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=41.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 51 QRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp CSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 77899999999999999999999999999999999999988643
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.94 E-value=1.4e-09 Score=67.60 Aligned_cols=39 Identities=36% Similarity=0.755 Sum_probs=36.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.+|
T Consensus 46 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 46 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 778999999999999999999999999999999988765
No 42
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.93 E-value=6.8e-10 Score=70.73 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=39.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 48 LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 4678999999999999999999999999999999888887753
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2e-09 Score=68.20 Aligned_cols=39 Identities=36% Similarity=0.634 Sum_probs=36.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.+|
T Consensus 55 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 55 RKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 778999999999999999999999999999999988766
No 44
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.93 E-value=6.6e-10 Score=72.58 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=38.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCe-eEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGR-HLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr-~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..|+..|||..|.|+ .|.|.++.+
T Consensus 58 g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 58 GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 78999999999999999999999999999999 998887765
No 45
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.93 E-value=1.3e-09 Score=72.07 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
+++||+||+|.+.++|..|+..|||..+.||+|.|.++.+..+
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHH
Confidence 5789999999999999999999999999999999999877544
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2.7e-09 Score=68.84 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=43.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIA 51 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~ 51 (112)
+.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+++...+.
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 99 (103)
T 2cq3_A 52 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNSG 99 (103)
T ss_dssp TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCCCS
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCCCC
Confidence 347999999999999999999999999999999999999987665443
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.92 E-value=1.4e-09 Score=71.45 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=41.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+....
T Consensus 54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 54 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 778999999999999999999999999999999999999876443
No 48
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.5e-09 Score=71.39 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=40.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
+.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++.
T Consensus 66 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 66 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 4579999999999999999999999999999999999988764
No 49
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.1e-09 Score=70.84 Aligned_cols=45 Identities=27% Similarity=0.611 Sum_probs=41.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+....
T Consensus 54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 54 GQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp CSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred CcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 789999999999999999999999999999999999998876443
No 50
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.8e-09 Score=69.28 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=38.5
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
+|||||+|.+.++|..|+..|||..|.|+.|+|.++.|.+.
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999988643
No 51
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.92 E-value=1.6e-09 Score=71.28 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=41.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.++.|+...
T Consensus 64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 788999999999999999999999999999999999999886543
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.92 E-value=9.2e-10 Score=72.52 Aligned_cols=42 Identities=26% Similarity=0.538 Sum_probs=39.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.++.|+
T Consensus 65 g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 65 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 778999999999999999999999999999999999888775
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=1.5e-09 Score=69.42 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=40.4
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+....
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 78899999999999999999999999999999999999876443
No 54
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.91 E-value=1.9e-09 Score=72.17 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=38.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+.++|||||+|.+.++|+.||..|||..|.|+.|.|.++...
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 357999999999999999999999999999999999887654
No 55
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2e-09 Score=68.19 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=37.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 54 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 7889999999999999999999999999999999877664
No 56
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.91 E-value=1.7e-09 Score=73.84 Aligned_cols=42 Identities=24% Similarity=0.470 Sum_probs=39.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 89 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 89 GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 789999999999999999999999999999999988888764
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.9e-09 Score=69.83 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.++...
T Consensus 54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 678999999999999999999 99999999999999999886543
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=8.8e-10 Score=71.03 Aligned_cols=42 Identities=29% Similarity=0.541 Sum_probs=38.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 47 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 47 GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 778999999999999999999999999999999977766654
No 59
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=3.2e-09 Score=68.01 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=40.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
++++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 367999999999999999999999999999999999999886543
No 60
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.90 E-value=2.1e-09 Score=68.16 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 54 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 54 GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 7789999999999999999999999999999999888764
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=69.64 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=40.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 52 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 57899999999999999999999999999999999999988643
No 62
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.6e-09 Score=70.40 Aligned_cols=43 Identities=35% Similarity=0.549 Sum_probs=39.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhC--CCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALS--NTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~ln--g~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|| +..|.|+.|.|.++.|+.
T Consensus 49 g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 49 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred CCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 6899999999999999999999996 589999999999988754
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.89 E-value=1e-09 Score=69.23 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=39.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 678999999999999999999999999999999988888775
No 64
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.89 E-value=2.5e-09 Score=73.75 Aligned_cols=43 Identities=35% Similarity=0.572 Sum_probs=40.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+
T Consensus 109 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 109 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 8899999999999999999999999999999999999998754
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.89 E-value=2.8e-09 Score=69.36 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=40.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhC------CCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALS------NTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~ln------g~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..|| |..|.|+.|.|.++.|+..
T Consensus 54 g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 54 EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 7889999999999999999999999 9999999999999988643
No 66
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.89 E-value=1.9e-09 Score=71.81 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=40.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 45 g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 45 SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 77899999999999999999999999999999999999887543
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=70.32 Aligned_cols=44 Identities=36% Similarity=0.498 Sum_probs=40.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+.
T Consensus 52 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 52 KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 77899999999999999999999999999999999999987543
No 68
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-09 Score=70.50 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=37.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.++
T Consensus 58 g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 58 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred CccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 789999999999999999999 89999999999988777664
No 69
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.9e-09 Score=68.08 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=40.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
+.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 52 TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 44789999999999999999999999999999999999988543
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.88 E-value=2.2e-09 Score=67.17 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.+.
T Consensus 45 ~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 45 GHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp SSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 788999999999999999999 99999999999999888764
No 71
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.1e-09 Score=69.31 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=40.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
+.++|||||+|.+.++|..|+..||+..|.|+.|.|.++.+.+
T Consensus 58 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 58 RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 5689999999999999999999999999999999999998754
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.88 E-value=2.3e-09 Score=71.46 Aligned_cols=45 Identities=31% Similarity=0.450 Sum_probs=41.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+....
T Consensus 61 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 61 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp SSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 788999999999999999999999999999999999998875433
No 73
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.88 E-value=2.3e-09 Score=74.13 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=40.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|++
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 7899999999999999999999999999999999999998763
No 74
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.88 E-value=1.1e-09 Score=69.02 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=36.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.+ |..|+..|||..+.|+.|.|.+|.+....
T Consensus 40 ~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 40 KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred CCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 788999999999999 99999999999999999999988876443
No 75
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.87 E-value=7.9e-10 Score=68.75 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=34.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCe-eEEE
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGR-HLIF 39 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr-~L~V 39 (112)
|+++|||||+|.+.++|..|+..|||..|.|+ +|+|
T Consensus 44 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 44 GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 78999999999999999999999999999999 8865
No 76
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.87 E-value=3.6e-09 Score=70.60 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=40.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.+|.+..
T Consensus 73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 6789999999999999999999999999999999999998753
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1.6e-09 Score=69.35 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=39.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCee----EEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRH----LIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~----L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..|||..|.|+. |+|.++.+.
T Consensus 49 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 49 GIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 788999999999999999999999999999999 988888764
No 78
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.87 E-value=2.2e-09 Score=69.39 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=40.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCC---eeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYG---RHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~g---r~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+..|||..+.| +.|.|.++.+.+.
T Consensus 53 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 53 GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 6789999999999999999999999999998 9999999987643
No 79
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3e-09 Score=67.47 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=40.2
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCC-CeeCCeeEEEEeeecccccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSN-THLYGRHLIFSVAHDQIISI 49 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng-~~l~gr~L~V~~a~~~~~k~ 49 (112)
++|||||+|.+.++|..|+..||| ..|.|+.|.|.++.++....
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLRS 87 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccccC
Confidence 589999999999999999999999 99999999999998865543
No 80
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.85 E-value=3.9e-09 Score=68.28 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=40.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCee---CCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHL---YGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l---~gr~L~V~~a~~~~~ 47 (112)
|+++|||||+|.+.++|..|+..|||..+ .|+.|.|.++.+...
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 52 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 78999999999999999999999999988 899999999987643
No 81
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=5.1e-09 Score=69.12 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=39.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
.++|||||+|.+.++|..|+..|||..|.||.|.|.++.|..
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 478999999999999999999999999999999999998853
No 82
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.85 E-value=2.6e-09 Score=72.63 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=39.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+++
T Consensus 85 g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 85 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 7899999999999999999999999999999999888887653
No 83
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=4.3e-09 Score=68.92 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=40.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 53 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 53 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALP 96 (114)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCC
Confidence 67899999999999999999999999999999999999876433
No 84
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.85 E-value=3e-09 Score=72.04 Aligned_cols=45 Identities=22% Similarity=0.419 Sum_probs=41.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.++.+....
T Consensus 81 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 81 RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 678999999999999999999999999999999999999875433
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.84 E-value=3e-09 Score=67.45 Aligned_cols=40 Identities=28% Similarity=0.484 Sum_probs=37.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 6789999999999999999999999999999999877664
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.84 E-value=4e-09 Score=73.84 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=40.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.+..
T Consensus 111 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 111 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred CcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 7789999999999999999999999999999999888887754
No 87
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.2e-09 Score=69.00 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=36.1
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
+++|||||+|.+.++|..|+..|||..|.|+.|+|.++.+
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 5789999999999999999999999999999996666554
No 88
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.84 E-value=3.9e-09 Score=66.62 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=37.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+++|||||+|.+.++|..|+..|||..+.|++|+|.++...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 57899999999999999999999999999999999887653
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.83 E-value=4.7e-09 Score=68.00 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=37.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 67 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 67 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 6789999999999999999999999999999999887764
No 90
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=7.3e-09 Score=66.42 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=39.6
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|...
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 3689999999999999999999999999999999999988654
No 91
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.82 E-value=6e-09 Score=69.26 Aligned_cols=42 Identities=21% Similarity=0.536 Sum_probs=39.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.+..
T Consensus 75 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 75 GHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp SSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred CCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence 788999999999999999999 899999999999999887643
No 92
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=73.13 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=40.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCC----eeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNT----HLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~----~l~gr~L~V~~a~~~~~k 48 (112)
|++||||||+|.+. +|..|+..|||. .|.||.|.|.++.|....
T Consensus 64 g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 64 QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 88999999999999 999999999999 999999999999886544
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=69.66 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=39.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCe-eCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTH-LYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~-l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||.. |.|+.|.|.++.+..
T Consensus 48 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 48 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 6789999999999999999999999999 999999888887754
No 94
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.81 E-value=3.8e-09 Score=69.67 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=36.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.++
T Consensus 79 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 79 SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp SCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 788999999999999999999999999999999977665
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.81 E-value=6e-09 Score=70.08 Aligned_cols=39 Identities=36% Similarity=0.755 Sum_probs=36.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|+|.+|
T Consensus 102 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 102 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 789999999999999999999999999999999988764
No 96
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.81 E-value=3.7e-09 Score=71.58 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=39.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
++++||+||+|.+.++|..|+..|||..+.||.|.|.++.+..
T Consensus 68 ~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 68 AEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 110 (118)
T ss_dssp CEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred CcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHh
Confidence 4567999999999999999999999999999999999887643
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.80 E-value=6.9e-09 Score=71.69 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=40.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
+.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+
T Consensus 78 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 78 KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 6789999999999999999999999999999999999988753
No 98
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.80 E-value=3.4e-09 Score=64.57 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=35.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|+.|+. |||..|.|+.|.|.+|
T Consensus 38 ~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 38 NRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp TTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 7889999999999999999998 9999999999977654
No 99
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=2.6e-09 Score=70.19 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.+..
T Consensus 64 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 64 RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred CccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence 788999999999999999999 999999999999888877643
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.80 E-value=3.1e-09 Score=70.95 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=37.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+. |||..|.||.|.|.++.+.
T Consensus 58 g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 58 GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 7889999999999999999999 9999999999977766543
No 101
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=6.9e-09 Score=69.12 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=37.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+ .+|+..|.||.|.|..+.+.
T Consensus 53 g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 889999999999999999999 69999999999988777653
No 102
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.79 E-value=1.1e-08 Score=66.00 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=37.3
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4899999999999999999999999999999999888764
No 103
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.78 E-value=8e-09 Score=70.06 Aligned_cols=41 Identities=34% Similarity=0.683 Sum_probs=38.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|.++|||||+|.+.++|..|+..|||..+.|+.|.|.+|.+
T Consensus 126 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 126 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 78899999999999999999999999999999998888753
No 104
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.78 E-value=7.5e-09 Score=69.72 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=39.5
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 5799999999999999999999999999999999988887643
No 105
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=4e-09 Score=70.55 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=36.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..||. |||..|.|+.|.|.++.+
T Consensus 64 g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 64 GKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 7889999999999999999999 999999999996665544
No 106
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.77 E-value=2.3e-09 Score=70.15 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=36.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+. +||..|.||.|.|.++.+.
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 52 GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 7899999999999999999999 9999999999966665543
No 107
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=4.8e-09 Score=69.34 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=36.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..||.. ||..|.|+.|.|.++.+.
T Consensus 54 g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 54 GQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp SSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred CCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 78999999999999999999987 999999999977666553
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.76 E-value=8.2e-09 Score=68.41 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=37.6
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCe--eCCeeEEEEeeeccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTH--LYGRHLIFSVAHDQI 46 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~--l~gr~L~V~~a~~~~ 46 (112)
++||||||+|.+.++|..|+..|||.. |.||+|.|.++.++.
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 468999999999999999999999976 779999999988753
No 109
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.76 E-value=1.6e-08 Score=68.58 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=53.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc-----cccCcccchhcccchhHHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS-----IIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k-----~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
|+++|||||+|.+.++|..|+..|||..+.|+.|.|.++.|.... .++. .+++..+.++|.++..+.
T Consensus 41 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~---nl~~~~t~~~l~~~f~~~ 112 (167)
T 1fxl_A 41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS---GLPKTMTQKELEQLFSQY 112 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEE---SCCTTCCHHHHHHHHGGG
T ss_pred CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEEC---CCCCcCCHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999876433 2222 455556666777666543
No 110
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=9.7e-09 Score=65.62 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=38.2
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeC--CeeEEEEeeeccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLY--GRHLIFSVAHDQI 46 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~--gr~L~V~~a~~~~ 46 (112)
.+|||||+|.+.++|..|+..|||..|. |+.|.|.++.|++
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 52 GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 3799999999999999999999999999 9999999998864
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=7.9e-09 Score=67.73 Aligned_cols=42 Identities=12% Similarity=0.307 Sum_probs=38.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCee--------CCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHL--------YGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l--------~gr~L~V~~a~~~ 45 (112)
|.++|||||+|.+.++|..|+..|||..| .++.|.|.++.|.
T Consensus 63 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 63 GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 67899999999999999999999999999 5788988888765
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.75 E-value=5.3e-09 Score=71.52 Aligned_cols=43 Identities=35% Similarity=0.572 Sum_probs=40.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 7899999999999999999999999999999999999988753
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.5e-08 Score=66.17 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=38.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
.+|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+.
T Consensus 60 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 60 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 379999999999999999999999999999999999888643
No 114
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=8.1e-09 Score=66.21 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=38.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+..
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 458999999999999999999999999999999999998754
No 115
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=1.5e-08 Score=66.97 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=39.0
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
.++|||||+|.+.++|..|+..|||..|.|+.|.|.++....+
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 4689999999999999999999999999999999998876533
No 116
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.74 E-value=9.6e-09 Score=70.53 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=38.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|++
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 68999999999999999999999999999999999988764
No 117
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.74 E-value=3.8e-09 Score=73.07 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=38.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+. |||..|.||.|.|.++.+.
T Consensus 85 g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 85 GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 7899999999999999999999 9999999999988877654
No 118
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.2e-08 Score=67.09 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=38.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..||+ .|.|+.|.|.++.+.
T Consensus 56 ~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 56 GKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp CCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred CccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 78999999999999999999999999 899999999998663
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.74 E-value=1.3e-08 Score=67.03 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=37.6
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
+|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 7999999999999999999999999999999999888754
No 120
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=2.1e-08 Score=65.94 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=39.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhh--CCCeeCCeeEEEEeeeccccccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEAL--SNTHLYGRHLIFSVAHDQIISII 50 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~l--ng~~l~gr~L~V~~a~~~~~k~~ 50 (112)
.||||||+|.+.++|..|+..| ++..|.|++|.|.++.++..+..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~~ 96 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTS 96 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcCC
Confidence 4899999999999999999977 56789999999999998776643
No 121
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.2e-08 Score=67.09 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+.. ||..|.|+.|.|.++.|+..
T Consensus 66 g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 66 KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp SSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred CCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 78899999999999999999998 99999999999999988643
No 122
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=64.32 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=38.7
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
+|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+..
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 799999999999999999999999999999999999876543
No 123
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.74 E-value=1.5e-08 Score=66.56 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=38.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..+ +..|.|+.|.|.++.++.
T Consensus 64 g~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 64 KRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp CCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCC
Confidence 789999999999999999999986 599999999999998764
No 124
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.21 E-value=1.1e-09 Score=72.27 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=39.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.++.
T Consensus 54 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 54 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 96 (116)
Confidence 7789999999999999999999999999999999888887754
No 125
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=5.4e-09 Score=67.63 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|.++|||||+|.+.++|..|+.. |+..|.|+.|.|.++.|+..
T Consensus 55 g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 55 NQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp CCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred CCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 78899999999999999999998 99999999998888877643
No 126
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=5.6e-09 Score=68.59 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|.++|||||+|.+.++|..|+. +||..|.|+.|.|.++
T Consensus 49 g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 49 KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 7899999999999999999999 8999999999955443
No 127
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=9.6e-09 Score=67.96 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=37.3
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
.|||||.|.+.++|.+|++.|||..|.||.|+|++|..++
T Consensus 46 gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 46 GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 3999999999999999999999999999999999988754
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.72 E-value=2.3e-08 Score=68.15 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=52.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc-----cccCcccchhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS-----IIAPTFQVMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k-----~~~~~~~~~~~a~~~~~~~~~~~~ 72 (112)
|.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.|.... .++. .+++..++++|.++..+
T Consensus 42 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~---nl~~~~t~~~l~~~f~~ 112 (168)
T 1b7f_A 42 GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVT---NLPRTITDDQLDTIFGK 112 (168)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEE---SCCTTCCHHHHHHHHTS
T ss_pred CccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEe---CCCCCCCHHHHHHhhhc
Confidence 778999999999999999999999999999999999999875433 2222 45566666667666644
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.1e-08 Score=66.54 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
|+++|||||+|.+.++|..|+.. |+..|.||.|.|.++.+..+
T Consensus 54 g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 54 GRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred CCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 88999999999999999999998 99999999999998877543
No 130
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.72 E-value=1.7e-08 Score=81.30 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=45.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccC
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAP 52 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~ 52 (112)
|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.+.....|.+
T Consensus 141 g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~~~ 189 (437)
T 3pgw_S 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189 (437)
T ss_pred CCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCCCC
Confidence 7889999999999999999999999999999999999999987766543
No 131
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=2.7e-08 Score=62.96 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=38.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
.+|||||+|.+.++|..|+..|||..|.|+.|.|.++.++..
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 368999999999999999999999999999999999988643
No 132
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=2.5e-08 Score=62.86 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=38.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
.+|||||+|.+.++|..|+..|||..|.|+.|.|.++.+...
T Consensus 42 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 42 VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 367999999999999999999999999999999999988643
No 133
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.71 E-value=5.6e-09 Score=77.38 Aligned_cols=42 Identities=21% Similarity=0.452 Sum_probs=39.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|++||||||+|.+.++|..||..|||..|.|+.|+|.++.+.
T Consensus 109 g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 109 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 889999999999999999999999999999999988777654
No 134
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.70 E-value=1.3e-08 Score=72.15 Aligned_cols=45 Identities=29% Similarity=0.502 Sum_probs=41.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+..
T Consensus 164 g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 164 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 778999999999999999999999999999999999999886543
No 135
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.1e-08 Score=68.20 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=38.3
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCC--CeeCCeeEEEEeeecccccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSN--THLYGRHLIFSVAHDQIISI 49 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng--~~l~gr~L~V~~a~~~~~k~ 49 (112)
.||||||+|.+.++|..|+..|++ ..|.|++|+|.++.++..+.
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 489999999999999999998864 78999999998888765553
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.70 E-value=7.9e-09 Score=66.37 Aligned_cols=41 Identities=24% Similarity=0.467 Sum_probs=38.4
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.+
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 68999999999999999999999999999999999888754
No 137
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.70 E-value=2.6e-08 Score=64.36 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=39.0
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
.+|||||+|.+.++|..|+..|||..|.|+.|.|.++.+....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 4789999999999999999999999999999999999875433
No 138
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.70 E-value=3.1e-08 Score=68.35 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=51.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCccc----chhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQ----VMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~----~~~~a~~~~~~~~~~~~ 72 (112)
|.++|||||+|.+.++|..|++ |||..|.|+.|.|.++.+.......+... .+++..++++|.++...
T Consensus 51 ~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 51 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED 122 (175)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTT
T ss_pred CccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 7899999999999999999994 99999999999999998754331111111 45666666666666554
No 139
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.70 E-value=1.3e-08 Score=69.56 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.++|||||+|.+.++|..|+. ++|..|.|+.|.|.+|.|+
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 7899999999999999999998 8999999999999998875
No 140
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.70 E-value=1.5e-08 Score=68.23 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=38.3
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII 47 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~ 47 (112)
++||+||+|.+.++|..|+..|||..+.||.|.|.++.+..+
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 95 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHH
Confidence 589999999999999999999999999999999988876443
No 141
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.69 E-value=1.2e-08 Score=71.43 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=40.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|+.
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 7789999999999999999999999999999999999998864
No 142
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.5e-08 Score=64.85 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=37.8
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 47999999999999999999999999999999998887753
No 143
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.69 E-value=1.3e-08 Score=73.42 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=36.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
+.++|||||+|.+.++|..|+..|||..|.|+.|.|.+|.|
T Consensus 140 ~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 140 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45799999999999999999999999999999996655544
No 144
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=1.6e-08 Score=66.88 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=36.0
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCC--eeCCeeEEEEeeecc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNT--HLYGRHLIFSVAHDQ 45 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~--~l~gr~L~V~~a~~~ 45 (112)
+.+|||||+|.+.++|..|+..||+. .|.||+|.|.+|.+.
T Consensus 50 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 50 NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 35799999999999999999999864 599999999988753
No 145
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1e-08 Score=67.02 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=38.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|| .+|+..|.||.|.|..+.+..
T Consensus 52 g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 52 GRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp SCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred CCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCC
Confidence 789999999999999999999 479999999999998887653
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.68 E-value=1.4e-08 Score=66.40 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=37.8
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.+
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 58999999999999999999999999999999999987543
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.68 E-value=5.3e-08 Score=65.92 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=52.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCccc----chhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQ----VMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~----~~~~a~~~~~~~~~~~~ 72 (112)
|+++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.......+... .+++..+.++|.++..+
T Consensus 38 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 110 (166)
T 3md3_A 38 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKD 110 (166)
T ss_dssp -CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhc
Confidence 6789999999999999999999999999999999999997754332221111 45666677777766644
No 148
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=3.4e-09 Score=66.04 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=35.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEe
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSV 41 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~ 41 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|+|++
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 44 NKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 78899999999999999999999999999999995543
No 149
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.67 E-value=1.6e-08 Score=69.39 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=37.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.+|
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 133 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 778999999999999999999999999999999988876
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=1.1e-08 Score=62.40 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=35.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+..++ ..+.|+.|.|.+|
T Consensus 39 ~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 39 KRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp SSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 7889999999999999999999999 9999999988765
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.5e-08 Score=61.93 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=34.0
Q ss_pred CcceEEEEeCCHHHHHHHHHhh-CCCeeCCeeEEEEee
Q 036201 6 HRGFAFVEYVTKQEAQNALEAL-SNTHLYGRHLIFSVA 42 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~l-ng~~l~gr~L~V~~a 42 (112)
++|||||+|.+.++|..|+..| ||..+.|+.|.|.++
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 5799999999999999999999 999999999977665
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.66 E-value=1.6e-08 Score=68.13 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=37.5
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCC--CeeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSN--THLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng--~~l~gr~L~V~~a~~~~~ 47 (112)
++||||||+|.+.++|..|+..||+ ..|.||+|+|.++.+...
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 5789999999999999999998864 569999999999987543
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.5e-08 Score=67.48 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=36.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCee-----CCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHL-----YGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l-----~gr~L~V~~a~~~ 45 (112)
.||||||+|.+.++|..|+..|||..| .|+.|.|+++.+.
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 489999999999999999999999998 6899999998843
No 154
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=3.9e-08 Score=64.19 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=36.9
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCC-----eeEEEEeeeccc
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYG-----RHLIFSVAHDQI 46 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~g-----r~L~V~~a~~~~ 46 (112)
|||||+|.+.++|..||..|||..|.| +.|.|.++.|+.
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence 999999999999999999999999999 999999988854
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.63 E-value=4.4e-08 Score=69.92 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=40.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+..
T Consensus 126 g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 126 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 7789999999999999999999999999999999999987754
No 156
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=2.7e-08 Score=67.61 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=39.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCC--CeeCCeeEEEEeeecccccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSN--THLYGRHLIFSVAHDQIISI 49 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng--~~l~gr~L~V~~a~~~~~k~ 49 (112)
.||||||+|.+.++|..|+..|++ ..|.|++|+|.++.++..+.
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 379999999999999999999884 68999999999999877664
No 157
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=4.6e-08 Score=64.41 Aligned_cols=43 Identities=26% Similarity=0.221 Sum_probs=37.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
++++|||||+|.+.++|..|+..+++ +.|+.|+|.++.+++..
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 57899999999999999999998554 68999999998876543
No 158
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=2.3e-08 Score=65.94 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=38.0
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCC--eeCCeeEEEEeeeccccc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNT--HLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~--~l~gr~L~V~~a~~~~~k 48 (112)
.||||||+|.+.++|..|+..|++. .|.|++|.|.++.++..+
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 4899999999999999999988764 589999999999887655
No 159
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.62 E-value=5.2e-08 Score=60.56 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=33.4
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEe
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSV 41 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~ 41 (112)
+++|||||+|.+.++|..|+ .|||..|.|+.|+|.+
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 45899999999999999999 9999999999998863
No 160
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.61 E-value=4.4e-08 Score=61.13 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=34.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+. +++..|.|+.|.|.+|
T Consensus 50 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 50 GRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 7889999999999999999996 4888999999988654
No 161
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.61 E-value=4.6e-08 Score=72.91 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.|+
T Consensus 251 g~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 251 SFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 678999999999999999999 99999999999999998875
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.60 E-value=7.7e-08 Score=65.89 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=51.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccc-----ccccCcccchhcccchhHHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQII-----SIIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~-----k~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
++++|||||+|.+.++|..|+ .|||..+.|+.|.|.++.+... ..++. .+++.-++++|.++..+.
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~---nlp~~~t~~~l~~~f~~~ 118 (172)
T 2g4b_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIG---GLPNYLNDDQVKELLTSF 118 (172)
T ss_dssp ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEE---CCCTTCCHHHHHHHHHTT
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEE---cCCCcCCHHHHHHHHHhc
Confidence 567999999999999999999 8999999999999998876432 23333 466666777777776643
No 163
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.59 E-value=5.4e-08 Score=69.73 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCC--eeEEEEeeeccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYG--RHLIFSVAHDQI 46 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~g--r~L~V~~a~~~~ 46 (112)
.++|||||+|.+.++|..|+..|||..|+| ++|+|.++.+..
T Consensus 82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 467999999999999999999999999976 999999999864
No 164
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=7.5e-08 Score=61.91 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=37.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+. ++..|.|+.|.|.++.++.
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 54 GHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTC
T ss_pred CCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCC
Confidence 7889999999999999999998 4789999999999888753
No 165
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.59 E-value=2.5e-08 Score=60.50 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=34.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
|+++|||||+|.+.++|..|+.. ++..+.|+.|.|.+|
T Consensus 38 ~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 38 NKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp SSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 78999999999999999999985 899999999977654
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.58 E-value=6.9e-08 Score=66.69 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=39.0
Q ss_pred CCcce-EEEEeCCHHHHHHHHHhhCCCeeCC--eeEEEEeeecccc
Q 036201 5 NHRGF-AFVEYVTKQEAQNALEALSNTHLYG--RHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGf-gFVef~s~eda~~Ai~~lng~~l~g--r~L~V~~a~~~~~ 47 (112)
+++|| |||+|.+.++|..|+..|||..|+| ++|+|.|+.+...
T Consensus 63 ~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 63 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 35788 9999999999999999999999998 9999999988643
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.56 E-value=1.1e-07 Score=68.57 Aligned_cols=67 Identities=13% Similarity=0.261 Sum_probs=53.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc-------cccCcccchhcccchhHHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS-------IIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k-------~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
|+++|||||+|.+.++|..|+..+|+..+.|+.|+|.++.+.... +++. .+++..++++|.++..+.
T Consensus 54 g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~---nl~~~~t~~~l~~~F~~~ 127 (213)
T 4f02_A 54 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIK---NLDKSIDNKALYDTFSAF 127 (213)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEE---SCCTTCCHHHHHHHHGGG
T ss_pred CCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceEC---CcccccHHHHHHHHHhhc
Confidence 789999999999999999999999999999999999988765432 3333 466666777777666543
No 168
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.56 E-value=7e-08 Score=71.65 Aligned_cols=42 Identities=33% Similarity=0.455 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|.
T Consensus 223 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 223 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 778999999999999999999999999999999977777664
No 169
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.54 E-value=9.7e-08 Score=66.76 Aligned_cols=41 Identities=27% Similarity=0.497 Sum_probs=38.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
++++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.+.
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 678999999999999999999 89999999999999998764
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.54 E-value=1.1e-07 Score=70.49 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=40.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+..
T Consensus 49 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 49 LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 7789999999999999999999999999999999999997654
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.54 E-value=2.2e-08 Score=68.56 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=36.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+.. ++..|.||.|.|.++.+.
T Consensus 81 GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 81 GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECHH
T ss_pred CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCHH
Confidence 88999999999999999999985 779999999988777654
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.53 E-value=7.1e-08 Score=65.68 Aligned_cols=39 Identities=44% Similarity=0.622 Sum_probs=36.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCC--eeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYG--RHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~g--r~L~V~~a 42 (112)
|.++|||||+|.+.++|..|+..|||..|.| ++|.|.+|
T Consensus 128 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 128 GRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 6789999999999999999999999999988 99988765
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.53 E-value=1e-07 Score=67.46 Aligned_cols=43 Identities=37% Similarity=0.511 Sum_probs=38.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+..
T Consensus 67 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 67 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp -CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred CccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 7789999999999999999999999999999999998876643
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.52 E-value=1.2e-07 Score=68.85 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=37.4
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 40 ~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 40 SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 3589999999999999999999999999999999999864
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=2.3e-08 Score=68.02 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=35.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..|+.. |+..|.||.|.|..+.+
T Consensus 65 gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 65 GRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp SCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred CCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence 88999999999999999999986 99999999996666554
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.51 E-value=2.2e-08 Score=69.51 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=38.6
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++|||||+|.+.++|..|| .+|+..|.||.|.|..+.+..
T Consensus 83 g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 789999999999999999999 789999999999888887754
No 177
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.51 E-value=8.6e-08 Score=64.93 Aligned_cols=39 Identities=26% Similarity=0.492 Sum_probs=35.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCee--EEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRH--LIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~--L~V~~a 42 (112)
|.++|||||+|.+.++|..|+..|||..|.|+. |.|+||
T Consensus 127 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 127 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 678999999999999999999999999999975 766654
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=1.3e-07 Score=64.58 Aligned_cols=40 Identities=30% Similarity=0.357 Sum_probs=36.8
Q ss_pred cce-EEEEeCCHHHHHHHHHhhCCCeeCC--eeEEEEeeeccc
Q 036201 7 RGF-AFVEYVTKQEAQNALEALSNTHLYG--RHLIFSVAHDQI 46 (112)
Q Consensus 7 rGf-gFVef~s~eda~~Ai~~lng~~l~g--r~L~V~~a~~~~ 46 (112)
.|| |||+|.+.++|..|+..|||..|+| +.|+|.+|.|..
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 386 9999999999999999999999998 699999998864
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.48 E-value=1.2e-07 Score=64.79 Aligned_cols=39 Identities=31% Similarity=0.517 Sum_probs=35.3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeC---CeeEEEEee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLY---GRHLIFSVA 42 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~---gr~L~V~~a 42 (112)
|.++|||||+|.+.++|..|+..|||..+. ++.|.|.+|
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 133 GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 778999999999999999999999998777 499988776
No 180
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.48 E-value=1.4e-07 Score=65.77 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=36.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|.++|||||+|.+.++|..|+.. +|..|.|+.|.|.++.|+
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred CCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 77899999999999999999986 899999999988777764
No 181
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.46 E-value=1.1e-07 Score=68.99 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=39.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
|+++||+||+|.+.++|..|+..|||..+.||.|.|.++....
T Consensus 172 ~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 172 AEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred cCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 6889999999999999999999999999999999999887543
No 182
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.9e-07 Score=58.26 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=36.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
..|.|||+|.+.++|..|+..|||..|.|+.|.|.++.|.
T Consensus 53 ~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 53 ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3456999999999999999999999999999999998875
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.45 E-value=2.7e-07 Score=64.34 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=49.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc-----------cccCcccchhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS-----------IIAPTFQVMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k-----------~~~~~~~~~~~a~~~~~~~~~~~~ 72 (112)
|.++|||||+|.+.++|..|+.. ++..|.|+.|.|.++.+.... +++. .+++.-++++|.++..+
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~---nLp~~~t~~~l~~~F~~ 127 (196)
T 1l3k_A 52 KRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVG---GIKEDTEEHHLRDYFEQ 127 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEE---CCTTTCCHHHHHHHHTT
T ss_pred CCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEe---CCCCCCCHHHHHHHHhc
Confidence 77899999999999999999986 999999999999998775322 1222 45666677777776654
No 184
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.44 E-value=6.5e-08 Score=62.13 Aligned_cols=40 Identities=25% Similarity=0.511 Sum_probs=36.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+. +|..|.|+.|.|.++.+.
T Consensus 47 g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 47 GVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp SCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 6789999999999999999998 999999999988888764
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.42 E-value=4.3e-07 Score=67.36 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=48.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCcccchhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~ 72 (112)
++++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+. ...++. .+++.-+.++|.++...
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~-~~l~v~---nlp~~~t~~~l~~~f~~ 118 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD-ALLCVA---NLPPSLTQQQFEELVRP 118 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS-CEEEEE---SCCTTCCHHHHHHHHGG
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC-CEEEEc---CCCCcCCHHHHHHHHHh
Confidence 578999999999999999999999999999999999986543 223332 34455555555555443
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.41 E-value=4e-07 Score=67.56 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=49.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccccccCcccchhcccchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIAPTFQVMERAKEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~ 72 (112)
++++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.. .+++. .+++..+.++|.++...
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~-~l~v~---nl~~~~t~~~l~~~F~~ 119 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA-ALTVK---NLSPVVSNELLEQAFSQ 119 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS-EEEEE---SCCTTCCHHHHHHHHGG
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC-ccccc---CCCCCCCHHHHHHHHHh
Confidence 4578999999999999999999999999999999999998732 22222 34445555555555543
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.38 E-value=2.5e-07 Score=65.15 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=37.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeC-CeeEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~-gr~L~V~~a~~~ 45 (112)
++|||||+|.+.++|..|+..|||..+. |+.|.|+++.|.
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 5899999999999999999999999999 999999988875
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.38 E-value=3.6e-07 Score=66.44 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=38.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeC-CeeEEEEeeecc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVAHDQ 45 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~-gr~L~V~~a~~~ 45 (112)
.++|||||+|.+.++|..|+..|||..+. |+.|.|+|+.|+
T Consensus 187 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 36899999999999999999999999999 999999998875
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.37 E-value=4.5e-07 Score=67.47 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=49.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecccccccc----Cccc-----chhcc-cchhHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIISIIA----PTFQ-----VMERA-KEGESLEELRAR 72 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k~~~----~~~~-----~~~~a-~~~~~~~~~~~~ 72 (112)
|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.|....... .... .+++. .+.++|.++...
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~ 234 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEG 234 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGG
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhc
Confidence 678999999999999999999999999999999999999886433111 1101 45666 666777766654
No 190
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.36 E-value=3.7e-07 Score=60.39 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=32.7
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCee-----EEEEeeec
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRH-----LIFSVAHD 44 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~-----L~V~~a~~ 44 (112)
|||||+|.+.++|..||..|||..|.|+. |+|..+.|
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 99999999999999999999999999998 66665554
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.35 E-value=3.6e-07 Score=68.83 Aligned_cols=40 Identities=30% Similarity=0.431 Sum_probs=35.3
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCee------------CCeeEEEEeeec
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHL------------YGRHLIFSVAHD 44 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l------------~gr~L~V~~a~~ 44 (112)
.++|||||+|.+.++|+.|+.+|+|..| .|+.|.|.+|.+
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 3689999999999999999999999999 899997766654
No 192
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.34 E-value=5.2e-07 Score=61.58 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCeeC---CeeEEEEeeeccccc------cccCcccchhcccchhHHHHHHHHH
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHLY---GRHLIFSVAHDQIIS------IIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l~---gr~L~V~~a~~~~~k------~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
+++|||||+|.+.++|..|+..|||..+. ++.|.|.++.+.... .++. .+++..++++|.++..+.
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~---nl~~~~t~~~l~~~F~~~ 119 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIG---MISKKCTENDIRVMFSSF 119 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEE---SCCTTCCHHHHHHHHGGG
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEc---CCCCcCCHHHHHHHHHhC
Confidence 78999999999999999999999998876 678888887765432 2222 466667777777776543
No 193
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=4.5e-07 Score=59.70 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeec
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHD 44 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~ 44 (112)
|+++|||||+|.+.++|..|+..|+ .++|+.|.|..+.+
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSSPT 87 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECCSS
T ss_pred CCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccCCC
Confidence 6889999999999999999999985 47888888876654
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.30 E-value=8.6e-07 Score=64.44 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=37.2
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 799999999999999999999999999999999999764
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.30 E-value=7.3e-07 Score=62.71 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=37.1
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 799999999999999999999999999999999998764
No 196
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=5.3e-07 Score=57.16 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=35.0
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc
Q 036201 9 FAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS 48 (112)
Q Consensus 9 fgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k 48 (112)
||||+|.+.++|..|+. |||..|.|+.|.|.++.++...
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 99999999999999999 9999999999988877765443
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.27 E-value=6.9e-07 Score=60.75 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc-----cccCcccchhcccchhHHHHHHHHH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS-----IIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k-----~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
|+++|||||+|.+.++|..|+.. +..+.|+.|.|.++.+.... .++. .+++..++++|.++..+.
T Consensus 42 g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~~~~~~l~V~---nlp~~~t~~~l~~~F~~~ 111 (167)
T 2cjk_A 42 GRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQDKTGKIFVG---GIGPDVRPKEFEEFFSQW 111 (167)
T ss_dssp SSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHHHHCEEEEEE---EECTTCCHHHHHHHHHTT
T ss_pred CCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhccCCCeEEEC---CCCCCCCHHHHHHHHHhC
Confidence 88999999999999999999984 67899999999988775422 3333 466667777777776643
No 198
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.25 E-value=1.4e-06 Score=55.30 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=29.1
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCee--CCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTHL--YGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~l--~gr~L~V~~a~~~~~ 47 (112)
.+||||||+|.+.++|.. |+|..+ .|+.|.|.++.|+..
T Consensus 46 ~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 479999999999998873 567654 599999998887643
No 199
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.8e-07 Score=62.72 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=34.6
Q ss_pred CCCcceEEEEeCC----HHH----HHHHHH--hhCCCeeCCeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVT----KQE----AQNALE--ALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s----~ed----a~~Ai~--~lng~~l~gr~L~V~~a~~~ 45 (112)
|.|+|||||+|.+ +.+ |..|+. .|||..|.||+|+|.+....
T Consensus 45 g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 45 ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp CCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 8999999999995 323 788888 78999999999999876653
No 200
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.23 E-value=1.4e-06 Score=64.48 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeC-CeeEEEEeee
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLY-GRHLIFSVAH 43 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~-gr~L~V~~a~ 43 (112)
+|||||+|.+.++|..|+..|||..|. |+.|+|+|+.
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 599999999999999999999999999 9999887764
No 201
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.22 E-value=1.1e-06 Score=63.22 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
|.++|||||+|.+.++|..|+..++ ..+.|+.|.|.++.
T Consensus 147 ~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 147 KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 6789999999999999999998765 58999999776544
No 202
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=56.97 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=34.6
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+.+||+|.+.++|.+|+. |||..++||+|+|..+.|.
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 569999999999999998 9999999999999999874
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.17 E-value=3.4e-06 Score=62.49 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=36.8
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCC-CeeC---CeeEEEEeeecc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSN-THLY---GRHLIFSVAHDQ 45 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng-~~l~---gr~L~V~~a~~~ 45 (112)
|+++|||||+|.+.++|..|+..||+ ..+. +++|.|.++.+.
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 77899999999999999999999954 4444 999999998774
No 204
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.96 E-value=9.5e-06 Score=58.69 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGR 35 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr 35 (112)
|.++|||||+|.+.++|..||..|||..|.|+
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 45679999999999999999999999999987
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.95 E-value=1e-05 Score=63.71 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCeeC---Ce--eEEEEeeecc
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTHLY---GR--HLIFSVAHDQ 45 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~l~---gr--~L~V~~a~~~ 45 (112)
+||||||+|.+.++|..|++.|||..+. |+ .|.|+|+...
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 99 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSE
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecc
Confidence 6899999999999999999999999883 55 6788888543
No 206
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=3.7e-06 Score=52.45 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=31.3
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCC--eeCCeeEEEEeeecccc
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNT--HLYGRHLIFSVAHDQII 47 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~--~l~gr~L~V~~a~~~~~ 47 (112)
.++|||||+|.+.++|+.| ++. .+.|+.|.|.++.|+..
T Consensus 40 ~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 40 PFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCCC
T ss_pred CCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCCC
Confidence 4689999999999998753 454 45899999999888643
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=4.5e-05 Score=50.14 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=31.0
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeee
Q 036201 9 FAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAH 43 (112)
Q Consensus 9 fgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~ 43 (112)
-+||+|.+.++|.+||. |||..++||.|+|.+-.
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 38999999999999998 99999999999997543
No 208
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.35 E-value=0.00016 Score=49.28 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc------------------ccccccCcccchhcccchhH
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ------------------IISIIAPTFQVMERAKEGES 65 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~------------------~~k~~~~~~~~~~~a~~~~~ 65 (112)
.+++|||||+|.+.++|+.|+..+++.......+.+....+. ...+++. .+++..++++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~---nl~~~~~~~~ 86 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVD---NLTYRTSPDT 86 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEE---SCCTTCCHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEe---CCCCCCCHHH
Confidence 468999999999999999999888764332222222211111 0112222 5677778888
Q ss_pred HHHHHHHH
Q 036201 66 LEELRART 73 (112)
Q Consensus 66 ~~~~~~~~ 73 (112)
|.++..+.
T Consensus 87 l~~~F~~~ 94 (158)
T 2kn4_A 87 LRRVFEKY 94 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88887654
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.28 E-value=0.00012 Score=49.66 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=52.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhh-CCCeeCCeeEEEEeeeccccc---------------------cccCcccchhccc
Q 036201 4 GNHRGFAFVEYVTKQEAQNALEAL-SNTHLYGRHLIFSVAHDQIIS---------------------IIAPTFQVMERAK 61 (112)
Q Consensus 4 g~srGfgFVef~s~eda~~Ai~~l-ng~~l~gr~L~V~~a~~~~~k---------------------~~~~~~~~~~~a~ 61 (112)
...+|+++|+|.+.++|+.|+..| ||..+.| .|.|+++.+.... +++. .++|..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~---nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVG---NLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEE---SCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEe---CCCCCC
Confidence 456899999999999999999999 9999999 9999988763210 1222 577778
Q ss_pred chhHHHHHHHHH
Q 036201 62 EGESLEELRART 73 (112)
Q Consensus 62 ~~~~~~~~~~~~ 73 (112)
++++|.++..+.
T Consensus 86 t~~~l~~~F~~~ 97 (150)
T 2i2y_A 86 NKTELERAFGYY 97 (150)
T ss_dssp SCHHHHHHHHHH
T ss_pred CHHHHHHHHHhh
Confidence 888888887664
No 210
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.11 E-value=0.059 Score=36.32 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=27.8
Q ss_pred ceEEEEeCC-HHHHHHHHHhhC--CCeeCCeeEEEE
Q 036201 8 GFAFVEYVT-KQEAQNALEALS--NTHLYGRHLIFS 40 (112)
Q Consensus 8 GfgFVef~s-~eda~~Ai~~ln--g~~l~gr~L~V~ 40 (112)
-+|||.|.+ ..+|..|+..|| +..|.|..+++.
T Consensus 56 ~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 56 KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 379999999 899999999995 688889887543
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.041 Score=37.15 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=30.7
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEe
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSV 41 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~ 41 (112)
|-|+|+|.+...|..|.=+|+|..|.||+|+|.-
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4499999999999999889999999999998753
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.58 E-value=0.061 Score=35.61 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=34.3
Q ss_pred EEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccc
Q 036201 10 AFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQI 46 (112)
Q Consensus 10 gFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~ 46 (112)
..|.|.+.++|..|-..|+++.++|+.|+|.+++|..
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 5799999999999999999999999999999998754
No 213
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=67.71 E-value=3.3 Score=24.52 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=25.9
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEee
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVA 42 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a 42 (112)
..|.||+.... .+..++..|++..+.|+.+.|..+
T Consensus 40 d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 40 DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 36899999875 577899999999999999977654
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=61.79 E-value=12 Score=25.43 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=27.1
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEE
Q 036201 7 RGFAFVEYVTKQEAQNALEALSNTHLYGRHLIF 39 (112)
Q Consensus 7 rGfgFVef~s~eda~~Ai~~lng~~l~gr~L~V 39 (112)
..+-.|.|.++.+|.+|+. .||..|.|..|-|
T Consensus 62 ~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV 93 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALL-ENGAVFNGVLLGV 93 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHT-TTTCEETTEECEE
T ss_pred CcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEE
Confidence 3567999999999999997 5999999986644
No 215
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=60.89 E-value=1.9 Score=28.35 Aligned_cols=61 Identities=7% Similarity=0.022 Sum_probs=18.3
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeeccccc-----cccCcccchhcccchhHHHHHHHHH
Q 036201 9 FAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQIIS-----IIAPTFQVMERAKEGESLEELRART 73 (112)
Q Consensus 9 fgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~~~k-----~~~~~~~~~~~a~~~~~~~~~~~~~ 73 (112)
+.|++|.+...+..|+..++|....|+. .+++..|.+.. +++. .|++..++++|.++..+.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~---nLp~~~te~~L~~~F~~~ 71 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVD---NLTYRTSPDTLRRVFEKY 71 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEE---CCCSSCHHHHHHHHHGGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEe---CCCCCCCHHHHHHHHHhc
Confidence 5688888888888899999988777765 34555553322 3333 567777777787776554
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.56 E-value=30 Score=22.52 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=29.0
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCeeEEEEeeecc
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRHLIFSVAHDQ 45 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~L~V~~a~~~ 45 (112)
+-|+|+|.+...|+..+.. .-+.|++..|.|....|.
T Consensus 48 ~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCC
T ss_pred CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCC
Confidence 5689999999999988763 246788899988765553
No 217
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=42.29 E-value=21 Score=22.16 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.2
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCC
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNT 30 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~ 30 (112)
-+||-||++....+...++..+.|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 4799999999998888888877764
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=41.80 E-value=28 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=23.9
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCCee
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYGRH 36 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~gr~ 36 (112)
.+-.|.|.+..+|+.|+.. ||..|.|..
T Consensus 60 NWihI~Y~s~~~A~rAL~k-NG~ii~g~~ 87 (119)
T 1wwh_A 60 NWMHIRYQSKLQARKALSK-DGRIFGESI 87 (119)
T ss_dssp SEEEEEESSHHHHHHHHTT-TTCEETTTE
T ss_pred CeEEEEeCCHHHHHHHHHh-CCeEecCCE
Confidence 5778999999999999984 999998644
No 219
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=36.59 E-value=14 Score=22.28 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=9.6
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..||||||+-.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999999764
No 220
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=34.97 E-value=15 Score=22.12 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=10.0
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...+|||||+-.+
T Consensus 9 n~~KGfGFI~~~d 21 (74)
T 2kcm_A 9 LAAKKYGFIQGDD 21 (74)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCEEEEecCC
Confidence 3468999998754
No 221
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=34.94 E-value=16 Score=21.49 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=9.8
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...+|||||.-.+
T Consensus 10 n~~kGfGFI~~~~ 22 (67)
T 3cam_A 10 NDAKGFGFITPDE 22 (67)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCeEEEecCC
Confidence 3468999999654
No 222
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=34.93 E-value=16 Score=21.31 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.5
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..+|||||.-.+
T Consensus 11 ~~kGfGFI~~~~ 22 (66)
T 1c9o_A 11 NEKGYGFIEVEG 22 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 468999998754
No 223
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=33.83 E-value=38 Score=21.17 Aligned_cols=26 Identities=4% Similarity=0.149 Sum_probs=23.4
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeC
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLY 33 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~ 33 (112)
.-|||.|.+.+++..-.+.++|..+.
T Consensus 46 SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 46 ARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 56899999999999999999998775
No 224
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=33.69 E-value=17 Score=21.70 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=9.8
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...+|||||.-.+
T Consensus 10 n~~kGfGFI~~~~ 22 (73)
T 3a0j_A 10 NAEKGYGFIEREG 22 (73)
T ss_dssp ETTTTEEEEECTT
T ss_pred ECCCCEEEEecCC
Confidence 3468999998654
No 225
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=33.13 E-value=18 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=9.3
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..+|||||+-.+
T Consensus 18 ~~kGfGFI~~~~ 29 (79)
T 1h95_A 18 VRNGYGFINRND 29 (79)
T ss_dssp TTTTEEEEEEGG
T ss_pred CCCCcEEEecCC
Confidence 468999999643
No 226
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=32.73 E-value=13 Score=23.34 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=8.4
Q ss_pred CCCcceEEEEe
Q 036201 4 GNHRGFAFVEY 14 (112)
Q Consensus 4 g~srGfgFVef 14 (112)
...||||||+-
T Consensus 17 n~~KGfGFI~~ 27 (90)
T 3ulj_A 17 NVRMGFGFISM 27 (90)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCeEEeEe
Confidence 35689999963
No 227
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=32.46 E-value=18 Score=21.06 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=10.0
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...+|||||.-.+
T Consensus 9 n~~kGfGFI~~~~ 21 (66)
T 1g6p_A 9 DSKKGYGFITKDE 21 (66)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCEEEEecCC
Confidence 3468999999764
No 228
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=30.98 E-value=20 Score=21.24 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.6
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..+|||||.-.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 468999999754
No 229
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=29.32 E-value=41 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCC
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNT 30 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~ 30 (112)
-+||-||++....+...++..+.|.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 4799999999998888888888774
No 230
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=27.30 E-value=25 Score=21.84 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=8.1
Q ss_pred cceEEEEeCC
Q 036201 7 RGFAFVEYVT 16 (112)
Q Consensus 7 rGfgFVef~s 16 (112)
+|||||+-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 7999999753
No 231
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=26.87 E-value=25 Score=22.17 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=8.6
Q ss_pred CcceEEEEeCC
Q 036201 6 HRGFAFVEYVT 16 (112)
Q Consensus 6 srGfgFVef~s 16 (112)
.+|||||.-.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 47999998653
No 232
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.07 E-value=27 Score=21.75 Aligned_cols=10 Identities=10% Similarity=0.534 Sum_probs=8.3
Q ss_pred cceEEEEeCC
Q 036201 7 RGFAFVEYVT 16 (112)
Q Consensus 7 rGfgFVef~s 16 (112)
+|||||.-.+
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 7999998754
No 233
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=25.80 E-value=57 Score=20.78 Aligned_cols=27 Identities=4% Similarity=0.106 Sum_probs=23.5
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCeeCC
Q 036201 8 GFAFVEYVTKQEAQNALEALSNTHLYG 34 (112)
Q Consensus 8 GfgFVef~s~eda~~Ai~~lng~~l~g 34 (112)
.-|||.|.+.++...-.+.++|..+.+
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 458999999999999999999987753
No 234
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.17 E-value=44 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=21.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCe
Q 036201 5 NHRGFAFVEYVTKQEAQNALEALSNTH 31 (112)
Q Consensus 5 ~srGfgFVef~s~eda~~Ai~~lng~~ 31 (112)
..+||-|||=.+..+...|+..+.+..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 358999999999999998887665543
No 235
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=24.32 E-value=63 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=17.8
Q ss_pred eEEEEeCCHHHHHHHHHhhC
Q 036201 9 FAFVEYVTKQEAQNALEALS 28 (112)
Q Consensus 9 fgFVef~s~eda~~Ai~~ln 28 (112)
-|||.|.+++.|..|+..++
T Consensus 51 sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 51 SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEecCHHHHHHHHHhcc
Confidence 59999999999999998764
No 236
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=23.55 E-value=36 Score=23.29 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=9.7
Q ss_pred CCcceEEEEeCC
Q 036201 5 NHRGFAFVEYVT 16 (112)
Q Consensus 5 ~srGfgFVef~s 16 (112)
..||||||.-.+
T Consensus 72 ~~KGfGFI~~dd 83 (147)
T 3aqq_A 72 RSKGHGFITPAD 83 (147)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEeccCC
Confidence 468999999864
No 237
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.08 E-value=30 Score=21.01 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.9
Q ss_pred CcceEEEEeCC
Q 036201 6 HRGFAFVEYVT 16 (112)
Q Consensus 6 srGfgFVef~s 16 (112)
.||||||.-.+
T Consensus 17 ~KGfGFI~~dd 27 (79)
T 2ytv_A 17 KDQFGFINYEV 27 (79)
T ss_dssp CSSEEEESCCC
T ss_pred cccceeEeCCC
Confidence 48999998764
No 238
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=22.70 E-value=29 Score=21.65 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=8.6
Q ss_pred cceEEEEeCC
Q 036201 7 RGFAFVEYVT 16 (112)
Q Consensus 7 rGfgFVef~s 16 (112)
+|||||.-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 8999999865
No 239
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=27.64 E-value=19 Score=21.28 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=9.7
Q ss_pred CCCcceEEEEeCC
Q 036201 4 GNHRGFAFVEYVT 16 (112)
Q Consensus 4 g~srGfgFVef~s 16 (112)
...+|||||.-.+
T Consensus 13 n~~kGfGFI~~~~ 25 (70)
T 2lss_A 13 NSTKNFGFIEQDN 25 (70)
Confidence 3468999998654
No 240
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=21.30 E-value=66 Score=23.06 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=22.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCe
Q 036201 6 HRGFAFVEYVTKQEAQNALEALSNTH 31 (112)
Q Consensus 6 srGfgFVef~s~eda~~Ai~~lng~~ 31 (112)
-+||-|||=.+..+...|+..+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 58999999999999999988777653
Done!