Query 036202
Match_columns 113
No_of_seqs 116 out of 1036
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 2.9E-33 6.4E-38 213.8 7.1 106 6-113 216-321 (321)
2 KOG0819 Annexin [Intracellular 100.0 3.9E-32 8.5E-37 207.7 8.0 101 7-112 61-161 (321)
3 PF00191 Annexin: Annexin; In 99.9 1.6E-22 3.4E-27 123.0 8.8 66 43-108 1-66 (66)
4 smart00335 ANX Annexin repeats 99.7 2.3E-17 4.9E-22 96.3 6.4 53 56-108 1-53 (53)
5 smart00335 ANX Annexin repeats 96.6 0.0014 2.9E-08 37.5 1.9 25 6-32 28-52 (53)
6 PF00191 Annexin: Annexin; In 96.6 0.0019 4.1E-08 38.4 2.5 25 7-33 42-66 (66)
7 PF14003 YlbE: YlbE-like prote 68.2 7.6 0.00016 23.6 2.9 34 65-98 16-49 (65)
8 cd00171 Sec7 Sec7 domain; Doma 46.8 1E+02 0.0023 21.9 8.8 74 17-96 9-88 (185)
9 PF08748 DUF1789: Domain of un 33.2 1.5E+02 0.0033 20.1 5.1 46 40-85 73-121 (128)
10 PF13720 Acetyltransf_11: Udp 33.1 37 0.0008 21.2 1.9 25 70-94 29-55 (83)
11 PF13043 DUF3903: Domain of un 32.7 43 0.00093 18.1 1.8 18 73-90 9-26 (40)
12 PF12098 DUF3574: Protein of u 32.3 41 0.00088 22.2 2.1 19 70-88 73-91 (104)
13 KOG0859 Synaptobrevin/VAMP-lik 31.1 72 0.0016 23.7 3.3 37 70-106 76-112 (217)
14 PF05291 Bystin: Bystin; Inte 28.6 1.7E+02 0.0037 23.0 5.2 73 36-113 84-165 (301)
15 PF08397 IMD: IRSp53/MIM homol 27.3 1.5E+02 0.0033 21.5 4.6 75 24-98 20-98 (219)
16 PF06854 Phage_Gp15: Bacteriop 27.1 1E+02 0.0022 22.2 3.5 37 71-107 108-144 (183)
17 PF13062 DUF3924: Protein of u 26.8 69 0.0015 18.7 2.1 21 72-92 14-34 (62)
18 COG0817 RuvC Holliday junction 25.7 1E+02 0.0023 21.9 3.3 39 30-68 86-124 (160)
19 PRK06041 flagellar assembly pr 25.0 4.2E+02 0.0092 22.3 7.9 61 47-109 81-151 (553)
20 KOG1014 17 beta-hydroxysteroid 24.9 17 0.00036 28.6 -0.9 45 65-109 77-123 (312)
21 PF05527 DUF758: Domain of unk 23.8 2.9E+02 0.0063 20.1 6.8 84 23-110 91-175 (186)
22 PF10788 DUF2603: Protein of u 23.7 77 0.0017 22.0 2.3 33 74-106 65-97 (137)
23 PF08020 DUF1706: Protein of u 22.5 72 0.0016 22.6 2.1 44 58-107 111-159 (166)
24 KOG2027 Spindle pole body prot 22.4 1.1E+02 0.0024 24.8 3.3 26 72-97 98-123 (388)
25 PRK10969 DNA polymerase III su 22.1 2.1E+02 0.0046 17.8 4.3 35 71-105 17-52 (75)
26 PRK12461 UDP-N-acetylglucosami 21.6 1.3E+02 0.0027 22.6 3.3 25 70-94 201-227 (255)
27 COG5118 BDP1 Transcription ini 21.4 94 0.002 25.5 2.7 37 44-83 372-408 (507)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.9e-33 Score=213.82 Aligned_cols=106 Identities=37% Similarity=0.574 Sum_probs=104.1
Q ss_pred CCCCCcHHHHHhhcCCCCchHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCcHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 036202 6 PSPRSRKIGSLLREGDQVNEFAAALRTAIRCINNSNKYYEKIIRNAIKGAGTDEDALTRVIVTRAEKDLKVIKEVYYKRN 85 (113)
Q Consensus 6 ~~~~~~L~~~lk~e~~~sG~~~~~l~~lv~~~~~~~~~dA~~L~~A~kg~gtde~~Li~Il~~rs~~~l~~Ik~~Y~~~y 85 (113)
+..|+++.++|++|+ ||+|+.+|++++.|+++||.|||+.||.||+|.|||+++||||+||||+.||..|+..|+++|
T Consensus 216 ~~~g~diek~I~~e~--~gd~~~~llaiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y 293 (321)
T KOG0819|consen 216 RISGKDIEKSIKEEF--SGDFEKLLLAIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKY 293 (321)
T ss_pred HhcchhHHHHHhhcc--CchHHHHHHHHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHh
Confidence 467999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhhcccHHHHHHHHHhhccCC
Q 036202 86 SVTLEQAVAKDTSGDYNAFLLTLLGKAD 113 (113)
Q Consensus 86 gksL~~~I~~~~sG~~~~~Ll~l~~~~~ 113 (113)
|+||.++|+++|||||+++|++||+++|
T Consensus 294 ~ksL~~~I~~dtsGdY~~~LlaL~g~~~ 321 (321)
T KOG0819|consen 294 GKSLYSAIKGDTSGDYKKALLALLGGDD 321 (321)
T ss_pred CccHHHHHhhhccchHHHHHHHHhCCCC
Confidence 9999999999999999999999999987
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-32 Score=207.66 Aligned_cols=101 Identities=30% Similarity=0.491 Sum_probs=97.9
Q ss_pred CCCCcHHHHHhhcCCCCchHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCcHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 036202 7 SPRSRKIGSLLREGDQVNEFAAALRTAIRCINNSNKYYEKIIRNAIKGAGTDEDALTRVIVTRAEKDLKVIKEVYYKRNS 86 (113)
Q Consensus 7 ~~~~~L~~~lk~e~~~sG~~~~~l~~lv~~~~~~~~~dA~~L~~A~kg~gtde~~Li~Il~~rs~~~l~~Ik~~Y~~~yg 86 (113)
.+|+||.++|++|+ ||+||+++++ |+.+|++|||..|++||||.|||+++||+|+|||+|.||.+|+++|+..|+
T Consensus 61 ~ygkDLi~~Lk~EL--sG~Fe~~i~a---l~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~ 135 (321)
T KOG0819|consen 61 MYGKDLIKDLKSEL--SGDFERAIVA---LMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYK 135 (321)
T ss_pred HHhHHHHHHHHHHh--CccHHHHHHH---HcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHc
Confidence 58999999999999 9999999877 789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhhcccHHHHHHHHHhhccC
Q 036202 87 VTLEQAVAKDTSGDYNAFLLTLLGKA 112 (113)
Q Consensus 87 ksL~~~I~~~~sG~~~~~Ll~l~~~~ 112 (113)
++|+++|.++|||+|+++|+.|+.++
T Consensus 136 ~sLEeDI~s~TSG~frklLv~L~~~~ 161 (321)
T KOG0819|consen 136 KSLEEDIASDTSGDFRKLLVSLVQGN 161 (321)
T ss_pred ccHHHHhhhccCchHHHHHHHHHhcC
Confidence 99999999999999999999999874
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.88 E-value=1.6e-22 Score=122.96 Aligned_cols=66 Identities=41% Similarity=0.718 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHhcCHHHHHHHHHHHHhhcCCcHHHHHhhcccHHHHHHHHHh
Q 036202 43 YYEKIIRNAIKGAGTDEDALTRVIVTRAEKDLKVIKEVYYKRNSVTLEQAVAKDTSGDYNAFLLTL 108 (113)
Q Consensus 43 ~dA~~L~~A~kg~gtde~~Li~Il~~rs~~~l~~Ik~~Y~~~ygksL~~~I~~~~sG~~~~~Ll~l 108 (113)
+||+.|++|++|+|+|+..+++|+++||+.|+..|+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999999999999999986
No 4
>smart00335 ANX Annexin repeats.
Probab=99.72 E-value=2.3e-17 Score=96.35 Aligned_cols=53 Identities=40% Similarity=0.707 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHhcCHHHHHHHHHHHHhhcCCcHHHHHhhcccHHHHHHHHHh
Q 036202 56 GTDEDALTRVIVTRAEKDLKVIKEVYYKRNSVTLEQAVAKDTSGDYNAFLLTL 108 (113)
Q Consensus 56 gtde~~Li~Il~~rs~~~l~~Ik~~Y~~~ygksL~~~I~~~~sG~~~~~Ll~l 108 (113)
|||+..|++|+++|++.|+..|+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=96.62 E-value=0.0014 Score=37.54 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=22.4
Q ss_pred CCCCCcHHHHHhhcCCCCchHHHHHHH
Q 036202 6 PSPRSRKIGSLLREGDQVNEFAAALRT 32 (113)
Q Consensus 6 ~~~~~~L~~~lk~e~~~sG~~~~~l~~ 32 (113)
..+|++|.++|++++ ||+|++++++
T Consensus 28 ~~~~~~L~~~i~~e~--sG~~~~~l~~ 52 (53)
T smart00335 28 KRYGKDLEDDIKSET--SGDFEKLLLA 52 (53)
T ss_pred HHhCccHHHHHHHhc--ChHHHHHHHh
Confidence 357999999999999 9999999865
No 6
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=96.62 E-value=0.0019 Score=38.43 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=21.5
Q ss_pred CCCCcHHHHHhhcCCCCchHHHHHHHH
Q 036202 7 SPRSRKIGSLLREGDQVNEFAAALRTA 33 (113)
Q Consensus 7 ~~~~~L~~~lk~e~~~sG~~~~~l~~l 33 (113)
.+|++|.++|++++ ||+|+++++++
T Consensus 42 ~~g~~L~~~i~~e~--sGd~~~~Ll~l 66 (66)
T PF00191_consen 42 KYGKDLEEDIKKET--SGDFEKLLLAL 66 (66)
T ss_dssp HHSS-HHHHHHHHS--THHHHHHHHHH
T ss_pred hhHHHHHHHHHHhC--CHHHHHHHHhC
Confidence 46899999999999 99999999763
No 7
>PF14003 YlbE: YlbE-like protein
Probab=68.22 E-value=7.6 Score=23.60 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHhcCHHHHHHHHHHHHhhcCCcHHHHHhhccc
Q 036202 65 VIVTRAEKDLKVIKEVYYKRNSVTLEQAVAKDTS 98 (113)
Q Consensus 65 Il~~rs~~~l~~Ik~~Y~~~ygksL~~~I~~~~s 98 (113)
...+|.|.++...-.++..-|++++.+.|++-..
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n 49 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSN 49 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHh
Confidence 4567999999999999999999999999986433
No 8
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=46.83 E-value=1e+02 Score=21.91 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=53.1
Q ss_pred hhcCCCCchHHHHHHHHHHHh---cCchHHHHHHHHHHhhcCCCcHHHHHHHHHhcCHHHHHHHHHHHHhhc---CCcHH
Q 036202 17 LREGDQVNEFAAALRTAIRCI---NNSNKYYEKIIRNAIKGAGTDEDALTRVIVTRAEKDLKVIKEVYYKRN---SVTLE 90 (113)
Q Consensus 17 k~e~~~sG~~~~~l~~lv~~~---~~~~~~dA~~L~~A~kg~gtde~~Li~Il~~rs~~~l~~Ik~~Y~~~y---gksL~ 90 (113)
...+ ..+.++++..++..- .+-+.-.|..|++. .|.+...+.++|+...+ .-..+..+|...+ |.++.
T Consensus 9 ~~~F--n~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~~-~~~~vL~~y~~~f~f~~~~i~ 82 (185)
T cd00171 9 RQLF--NRKPKKGISFLIEKGFLEDDSPKEIAKFLYET---EGLNKKAIGEYLGENNE-FNSLVLHEFVDLFDFSGLRLD 82 (185)
T ss_pred HHHH--ccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhC---CCCCHHHHHHHHcCCch-HHHHHHHHHHHhcCCCCCCHH
Confidence 3445 567777776655422 24456667777765 57899999999998764 5578888899887 78999
Q ss_pred HHHhhc
Q 036202 91 QAVAKD 96 (113)
Q Consensus 91 ~~I~~~ 96 (113)
++++.-
T Consensus 83 ~ALR~~ 88 (185)
T cd00171 83 EALRKF 88 (185)
T ss_pred HHHHHH
Confidence 888853
No 9
>PF08748 DUF1789: Domain of unknown function (DUF1789); InterPro: IPR014859 This entry represents a putative uncharacterised protein found in phage-related conserved hypothetical protein from Bordetella.
Probab=33.18 E-value=1.5e+02 Score=20.14 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHhhcCCCcH---HHHHHHHHhcCHHHHHHHHHHHHhhc
Q 036202 40 SNKYYEKIIRNAIKGAGTDE---DALTRVIVTRAEKDLKVIKEVYYKRN 85 (113)
Q Consensus 40 ~~~~dA~~L~~A~kg~gtde---~~Li~Il~~rs~~~l~~Ik~~Y~~~y 85 (113)
-...+++.+.+-+.||+.|+ ..-+..|+...+.--.+|-.+|.+.+
T Consensus 73 ~~~~~ad~i~~iv~gW~ld~~fn~Enl~~L~~~yp~a~~AI~~aY~~~l 121 (128)
T PF08748_consen 73 GVDLNADFILEIVAGWDLDEEFNDENLELLVDNYPGAAEAIVDAYYQAL 121 (128)
T ss_pred hhhhhHHHHHHHHhccCCCCccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34568999999999999774 35566788888888889999988654
No 10
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=33.14 E-value=37 Score=21.17 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhhcCC--cHHHHHh
Q 036202 70 AEKDLKVIKEVYYKRNSV--TLEQAVA 94 (113)
Q Consensus 70 s~~~l~~Ik~~Y~~~ygk--sL~~~I~ 94 (113)
+..++..|+++|+..|.. ++.++++
T Consensus 29 s~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 29 SKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp -HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 678999999999999854 4555554
No 11
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=32.75 E-value=43 Score=18.08 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhcCCcHH
Q 036202 73 DLKVIKEVYYKRNSVTLE 90 (113)
Q Consensus 73 ~l~~Ik~~Y~~~ygksL~ 90 (113)
-++.++..-++.||++|-
T Consensus 9 ai~kvr~eckrrfgktll 26 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHHhchhhh
Confidence 356778888999999874
No 12
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=32.26 E-value=41 Score=22.19 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhhcCCc
Q 036202 70 AEKDLKVIKEVYYKRNSVT 88 (113)
Q Consensus 70 s~~~l~~Ik~~Y~~~ygks 88 (113)
++..+.+|+++|++.|+..
T Consensus 73 ~~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4678999999999999764
No 13
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.09 E-value=72 Score=23.72 Aligned_cols=37 Identities=27% Similarity=0.226 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhhcCCcHHHHHhhcccHHHHHHHH
Q 036202 70 AEKDLKVIKEVYYKRNSVTLEQAVAKDTSGDYNAFLL 106 (113)
Q Consensus 70 s~~~l~~Ik~~Y~~~ygksL~~~I~~~~sG~~~~~Ll 106 (113)
.-.-|..|++.|.+.||.....++.....-.|.+.|-
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~ 112 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLK 112 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHH
Confidence 3478999999999999999888887766666666554
No 14
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=28.56 E-value=1.7e+02 Score=22.97 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=44.6
Q ss_pred HhcCchHHHHHHHHHHhhcCCC--cHHH----HHHHHHhcCHHHHHHHHHHHHhhcCCcHHHHHhh---cccHHHHHHHH
Q 036202 36 CINNSNKYYEKIIRNAIKGAGT--DEDA----LTRVIVTRAEKDLKVIKEVYYKRNSVTLEQAVAK---DTSGDYNAFLL 106 (113)
Q Consensus 36 ~~~~~~~~dA~~L~~A~kg~gt--de~~----Li~Il~~rs~~~l~~Ik~~Y~~~ygksL~~~I~~---~~sG~~~~~Ll 106 (113)
++++|..|-+..+++|.+=+.. ++.. +..||.-|-..++.+ .++-.-.|..++.+ ....-|+.+|+
T Consensus 84 ~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~-----~KKLn~hly~ALkKalyKP~AffkGil~ 158 (301)
T PF05291_consen 84 YLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAE-----NKKLNYHLYMALKKALYKPAAFFKGILL 158 (301)
T ss_pred HhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH-----cCCcCHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6788999999999998875432 3332 233444443333331 12233445555554 46677999999
Q ss_pred HhhccCC
Q 036202 107 TLLGKAD 113 (113)
Q Consensus 107 ~l~~~~~ 113 (113)
-||..++
T Consensus 159 PL~~sg~ 165 (301)
T PF05291_consen 159 PLCESGT 165 (301)
T ss_pred HhhcCCC
Confidence 9987653
No 15
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=27.25 E-value=1.5e+02 Score=21.51 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCcH--HHHHHHHHh--cCHHHHHHHHHHHHhhcCCcHHHHHhhccc
Q 036202 24 NEFAAALRTAIRCINNSNKYYEKIIRNAIKGAGTDE--DALTRVIVT--RAEKDLKVIKEVYYKRNSVTLEQAVAKDTS 98 (113)
Q Consensus 24 G~~~~~l~~lv~~~~~~~~~dA~~L~~A~kg~gtde--~~Li~Il~~--rs~~~l~~Ik~~Y~~~ygksL~~~I~~~~s 98 (113)
..+.+++.++..+.....+-.+.....|....|+.+ ..|++|... +-+.++..+.+++...+-.+|++.++.+.+
T Consensus 20 ~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k 98 (219)
T PF08397_consen 20 KKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKK 98 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777766555444444444444455666556433 466666554 356778888888888888888888876554
No 16
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=27.14 E-value=1e+02 Score=22.22 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHhhcccHHHHHHHHH
Q 036202 71 EKDLKVIKEVYYKRNSVTLEQAVAKDTSGDYNAFLLT 107 (113)
Q Consensus 71 ~~~l~~Ik~~Y~~~ygksL~~~I~~~~sG~~~~~Ll~ 107 (113)
+.|-..|-.+|.+.||.+|.+.+..--=-.|+.++-.
T Consensus 108 ~~Da~~IyasF~~~YgIdL~~~~~~lhW~~F~aL~~~ 144 (183)
T PF06854_consen 108 EQDADYIYASFLQQYGIDLIEEQGYLHWWKFKALFNG 144 (183)
T ss_pred HHhHHHHHHHHHHHhCccHHHhcccCcHHHHHHHHhc
Confidence 5788899999999999999766543222334444433
No 17
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=26.75 E-value=69 Score=18.68 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhcCCcHHHH
Q 036202 72 KDLKVIKEVYYKRNSVTLEQA 92 (113)
Q Consensus 72 ~~l~~Ik~~Y~~~ygksL~~~ 92 (113)
..+..++++|+++.|.++.+.
T Consensus 14 ekl~llkqayqkktgatises 34 (62)
T PF13062_consen 14 EKLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHHhhcCCccchh
Confidence 457789999999999987653
No 18
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=25.68 E-value=1e+02 Score=21.91 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhcCCCcHHHHHHHHHh
Q 036202 30 LRTAIRCINNSNKYYEKIIRNAIKGAGTDEDALTRVIVT 68 (113)
Q Consensus 30 l~~lv~~~~~~~~~dA~~L~~A~kg~gtde~~Li~Il~~ 68 (113)
++++++.-.+-.+|-+..+++|..|.|..++.=+..++.
T Consensus 86 ~la~~~~~l~v~eY~p~~VKkavvG~G~A~K~QVq~MV~ 124 (160)
T COG0817 86 LLAAARRGLPVFEYTPNQVKKAVVGNGKADKEQVQHMVK 124 (160)
T ss_pred HHHHHHcCCChhhccHHHHHHHhhcCCcccHHHHHHHHH
Confidence 456555566778999999999999998766654444444
No 19
>PRK06041 flagellar assembly protein J; Reviewed
Probab=24.99 E-value=4.2e+02 Score=22.34 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=39.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhcCHHHHHHHHHHHHh------hcCCcHHHHHh----hcccHHHHHHHHHhh
Q 036202 47 IIRNAIKGAGTDEDALTRVIVTRAEKDLKVIKEVYYK------RNSVTLEQAVA----KDTSGDYNAFLLTLL 109 (113)
Q Consensus 47 ~L~~A~kg~gtde~~Li~Il~~rs~~~l~~Ik~~Y~~------~ygksL~~~I~----~~~sG~~~~~Ll~l~ 109 (113)
..-.+|...|.+-..+++.+..+ .+..++..++++ .+|.++.++++ .-.|-.|+++|..++
T Consensus 81 tym~aLs~sg~~~~eifr~la~~--~~yG~~s~E~~~Iv~~v~~~g~d~~~Al~~~a~~tPS~~l~~fl~~l~ 151 (553)
T PRK06041 81 TYMAVLSTTDIDRDEIFRILSEK--EEYGALAKEFRKIYVLVDKWNYSLAEACRFVAKRTPSELFADFLDRLA 151 (553)
T ss_pred HHHHHHHcCCCCHHHHHHHHhCc--hhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 33455666677777777777732 347776666665 57888877776 355666777776654
No 20
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.87 E-value=17 Score=28.63 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=34.2
Q ss_pred HHHhcCHHHHHHHHHHHHhhcCCcHHHHHhhcccHH--HHHHHHHhh
Q 036202 65 VIVTRAEKDLKVIKEVYYKRNSVTLEQAVAKDTSGD--YNAFLLTLL 109 (113)
Q Consensus 65 Il~~rs~~~l~~Ik~~Y~~~ygksL~~~I~~~~sG~--~~~~Ll~l~ 109 (113)
+|++|++.-|..++.+-.+.|+....-.+-+-++|+ |++++-.|.
T Consensus 77 vLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 77 VLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLA 123 (312)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhc
Confidence 688999999999999999999955544444556666 777765544
No 21
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=23.80 E-value=2.9e+02 Score=20.09 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred CchHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCcHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCcHHHHHhhcccHHH
Q 036202 23 VNEFAAALRTAIRCINNSNKYYEKIIRNAIKGAGTDEDALTRVIVTR-AEKDLKVIKEVYYKRNSVTLEQAVAKDTSGDY 101 (113)
Q Consensus 23 sG~~~~~l~~lv~~~~~~~~~dA~~L~~A~kg~gtde~~Li~Il~~r-s~~~l~~Ik~~Y~~~ygksL~~~I~~~~sG~~ 101 (113)
...|..+.++++....-..-||-.-|..++... ...|..++-.+ ++.-...|+..|--....++-+.+-+ ..|+|
T Consensus 91 r~k~~~~amt~iSF~eV~fTfD~~~L~~~L~ec---~~~L~~lv~~HLT~KS~~Ri~~vF~~f~~~efL~~lf~-~~~~~ 166 (186)
T PF05527_consen 91 RKKFHQLAMTAISFYEVDFTFDRNYLSKLLKEC---RDLLHQLVEPHLTPKSHGRIDHVFNFFSDPEFLDALFS-PDEEY 166 (186)
T ss_dssp HHHHHHHHHHHHHHTSTTS---HHHHHHHHHHH---HHHHHHHHTTTS-HHHHHHHHHHHHHHT-HHHHHHHTS-G--GG
T ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH---HHHHHHHHHHhCChhhHHHHHHHHHhhCChHHHHHHhC-cccch
Confidence 455666666777777777778877777777642 44555554432 66777778887777777777777775 45778
Q ss_pred HHHHHHhhc
Q 036202 102 NAFLLTLLG 110 (113)
Q Consensus 102 ~~~Ll~l~~ 110 (113)
+..|-.+|.
T Consensus 167 ~~~L~~i~~ 175 (186)
T PF05527_consen 167 RDHLGKICD 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777664
No 22
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=23.66 E-value=77 Score=22.00 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCCcHHHHHhhcccHHHHHHHH
Q 036202 74 LKVIKEVYYKRNSVTLEQAVAKDTSGDYNAFLL 106 (113)
Q Consensus 74 l~~Ik~~Y~~~ygksL~~~I~~~~sG~~~~~Ll 106 (113)
+..++++++..|.-.|+.+|.+.+==||.+++.
T Consensus 65 i~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~ 97 (137)
T PF10788_consen 65 IESLKNAQKENFELKLEKDILQQMPIDFEDVWA 97 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 457899999999999999999999999988765
No 23
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=22.51 E-value=72 Score=22.60 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=34.1
Q ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHhh-----cCCcHHHHHhhcccHHHHHHHHH
Q 036202 58 DEDALTRVIVTRAEKDLKVIKEVYYKR-----NSVTLEQAVAKDTSGDYNAFLLT 107 (113)
Q Consensus 58 de~~Li~Il~~rs~~~l~~Ik~~Y~~~-----ygksL~~~I~~~~sG~~~~~Ll~ 107 (113)
....++..+-+.|+.+| |... =+.+|...|...||.+|..+.--
T Consensus 111 s~~~v~~lI~~~sdeeL------f~~~~~~W~~~~tlg~~i~~nTsS~y~~a~~k 159 (166)
T PF08020_consen 111 SHQKVIALIESFSDEEL------FEKGQFKWTGKWTLGRYIQSNTSSHYDWARKK 159 (166)
T ss_pred HHHHHHHHHHhCcchhh------ccccccCCcCCCchhheeeecchhHHHHHHHH
Confidence 45677778888888888 4443 37789999999999999887643
No 24
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=22.44 E-value=1.1e+02 Score=24.81 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHhhcc
Q 036202 72 KDLKVIKEVYYKRNSVTLEQAVAKDT 97 (113)
Q Consensus 72 ~~l~~Ik~~Y~~~ygksL~~~I~~~~ 97 (113)
.+|..|+..|..+||+++........
T Consensus 98 pEL~~i~~~f~~kYGk~f~~~a~~l~ 123 (388)
T KOG2027|consen 98 PELREIRDLFVKKYGKEFVKAAIELR 123 (388)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 89999999999999999998877664
No 25
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=22.07 E-value=2.1e+02 Score=17.80 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhcCCc-HHHHHhhcccHHHHHHH
Q 036202 71 EKDLKVIKEVYYKRNSVT-LEQAVAKDTSGDYNAFL 105 (113)
Q Consensus 71 ~~~l~~Ik~~Y~~~ygks-L~~~I~~~~sG~~~~~L 105 (113)
+.||.+---+|++.|+++ ..+.|..+..-+++..+
T Consensus 17 nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yF 52 (75)
T PRK10969 17 NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYF 52 (75)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHH
Confidence 467777777899999998 55667777777766654
No 26
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=21.63 E-value=1.3e+02 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhhcCC--cHHHHHh
Q 036202 70 AEKDLKVIKEVYYKRNSV--TLEQAVA 94 (113)
Q Consensus 70 s~~~l~~Ik~~Y~~~ygk--sL~~~I~ 94 (113)
++.++..++++|+..|.. +++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
T PRK12461 201 SSRAIRALKRAYKIIYRSGLSVQQAVA 227 (255)
T ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 678999999999999877 4566554
No 27
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=21.43 E-value=94 Score=25.49 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHhcCHHHHHHHHHHHHh
Q 036202 44 YEKIIRNAIKGAGTDEDALTRVIVTRAEKDLKVIKEVYYK 83 (113)
Q Consensus 44 dA~~L~~A~kg~gtde~~Li~Il~~rs~~~l~~Ik~~Y~~ 83 (113)
+-+..|+|+.-||||...+-...-+|+..|+ |..|.+
T Consensus 372 e~ekFYKALs~wGtdF~LIs~lfP~R~RkqI---KaKfi~ 408 (507)
T COG5118 372 EIEKFYKALSIWGTDFSLISSLFPNRERKQI---KAKFIK 408 (507)
T ss_pred HHHHHHHHHHHhcchHHHHHHhcCchhHHHH---HHHHHH
Confidence 5677899999999999998888887766554 444443
Done!